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Homologs of copS gene of AF060858

116

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) CFSAN001992_06170
( YP_007470990.1 )

heavy metal sensor kinase family protein

NC_020307
(Salmonella enterica CFSAN001992)

0.0

2) SeD_A1170
( YP_002215026.1 )

heavy metal sensor kinase family protein

NC_011205
(Salmonella enterica CT_02021853)

0.0

3) copS
( YP_002226049.1 )

histidine kinase

NC_011274
(Salmonella enterica 287/91)

0.0

4) CFSAN002050_11870
( YP_008260289.1 )

sensor histidine kinase

NC_021818
(Salmonella enterica CFSAN002050)

0.0

5) copS
( YP_002243089.1 )

histidine kinase

NC_011294
(Salmonella enterica P125109)

0.0

6) I137_08920
( YP_008381253.1 )

sensor histidine kinase

NC_021984
(Salmonella enterica S06004)

0.0

7) copS
( YP_216032.1 )

copper resistance; histidine kinase

NC_006905
(Salmonella enterica SC-B67)

0.0

8) SPAB_02460
( YP_001588674.1 )

hypothetical protein

NC_010102
(Salmonella enterica SGSC4150; SPB7)

0.0

9) SeAg_B1054
( YP_002145964.1 )

heavy metal sensor kinase subfamily

NC_011149
(Salmonella enterica SL483)

0.0

10) SEEH1578_14700
( YP_008246999.1 )

Putative two component system histidine kinase YedV

NC_021810
(Salmonella enterica 41578)

0.0

11) SU5_01726
( YP_006087362.1 )

Putative two component system histidine kinase YedV

NC_017623
(Salmonella enterica B182)

0.0

12) CFSAN002069_03545
( YP_008249565.1 )

sensor histidine kinase

NC_021812
(Salmonella enterica CFSAN002069)

0.0

13) SeHA_C1205
( YP_002045096.1 )

heavy metal sensor kinase subfamily

NC_011083
(Salmonella enterica SL476)

0.0

14) SE451236_11325
( YP_008265294.1 )

sensor histidine kinase

NC_021820
(Salmonella enterica 08-1736)

0.0

15) copS
( YP_005236829.1 )

copper resistance protein

NC_016856
(Salmonella enterica 14028S)

0.0

16) CFSAN001921_11700
( YP_008255710.1 )

sensor histidine kinase

NC_021814
(Salmonella enterica CFSAN001921)

0.0

17) SeSA_A1159
( YP_002114093.1 )

heavy metal sensor kinase subfamily protein

NC_011094
(Salmonella enterica CVM19633)

0.0

18) STMMW_11051
( YP_005232161.1 )

histidine kinase

NC_016854
(Salmonella enterica D23580)

0.0

19) copS
( NP_460068.1 )

copper resistance protein

NC_003197
(Salmonella enterica LT2)

0.0

20) copS
( YP_005180947.1 )

histidine kinase

NC_016810
(Salmonella enterica SL1344)

0.0

21) copS
( YP_005241991.1 )

copper resistance protein

NC_016857
(Salmonella enterica ST4/74)

0.0

22) STMDT12_C11140
( YP_005246810.1 )

copper resistance protein

NC_016860
(Salmonella enterica T000240)

0.0

23) STU288_01805
( YP_007901466.1 )

copper resistance protein

NC_021151
(Salmonella enterica U288)

0.0

24) copS
( YP_005251605.1 )

copper resistance protein

NC_016863
(Salmonella enterica UK-1)

0.0

25) SSPA1631
( YP_002142471.1 )

histidine kinase

NC_011147
(Salmonella enterica AKU12601)

0.0

26) copS
( YP_150986.1 )

histidine kinase

NC_006511
(Salmonella enterica ATCC 9150)

0.0

27) SEEB0189_14095
( YP_008309131.1 )

sensor histidine kinase

NC_021844
(Salmonella enterica CFSAN000189)

0.0

28) copS
( NP_455592.1 )

histidine kinase

NC_003198
(Salmonella enterica CT18)

0.0

29) SNSL254_A1190
( YP_002040350.1 )

heavy metal sensor kinase subfamily

NC_011080
(Salmonella enterica SL254)

0.0

30) SBOV10081
( YP_008504881.1 )

heavy metal sensor kinase subfamily

NC_022241
(Salmonella enterica 3114)

0.0

31) copS
( YP_008481577.1 )

histidine kinase

NC_022221
(Salmonella enterica CDC1983-67)

0.0

32) copS
( YP_002638197.1 )

histidine kinase

NC_012125
(Salmonella enterica RKS4594)

0.0

33) copS
( YP_005396510.1 )

histidine kinase

NC_017046
(Salmonella enterica 798)

0.0

34) STBHUCCB_19410
( YP_005217481.1 )

sensor-like histidine kinase yedV

NC_016832
(Salmonella enterica P-stx-12)

0.0

35) copS
( NP_805596.1 )

histidine kinase

NC_004631
(Salmonella enterica Ty2)

0.0

36) TY21A_09285
( YP_007926143.1 )

histidine kinase

NC_021176
(Salmonella enterica Ty21a)

0.0

37) copS
( YP_005213120.1 )

histidine kinase

NC_016831
(Salmonella enterica RKS5078)

0.0

38) SN31241_21620
( YP_008360079.1 )

sensor-like histidine kinase YedV

NC_021902
(Salmonella enterica USMARC-S3124.1)

0.0

39) SARI_01908
( YP_001570933.1 )

hypothetical protein

NC_010067
(Salmonella enterica RSK2980)

0.0

40) copS
( YP_004729824.1 )

histidine kinase

NC_015761
(Salmonella bongori NCTC 12419)

1e-176

41) A464_1034
( YP_008321630.1 )

Putative two component system histidine kinase YedV

NC_021870
(Salmonella bongori N268-08)

5e-174

42) ROD_50431
( YP_003368400.1 )

two-component sensor kinase

NC_013716
(Citrobacter rodentium ICC168)

1e-112

43) yedV
( YP_005727687.1 )

putative Sensor protein

NC_017328
(Shigella flexneri 2002017)

1e-109

44) yedV
( NP_707853.1 )

2-component sensor protein

NC_004337
(Shigella flexneri 301)

1e-109

45) yedV
( YP_002412978.1 )

sensory kinase in two-component regulatory system with YedW

NC_011751
(Escherichia coli UMN026)

9e-110

46) yedV
( NP_837577.1 )

2-component sensor protein

NC_004741
(Shigella flexneri 2457T)

2e-109

47) yedV
( YP_002556838.1 )

sensor-like histidine kinase yedV

NC_011993
(Escherichia coli LF82)

7e-109

48) NRG857_09825
( YP_006120320.1 )

putative sensor-like histidine kinase YedV

NC_017634
(Escherichia coli NRG 857C)

7e-109

49) ECP_1901
( YP_669803.1 )

sensor-like histidine kinase YedV

NC_008253
(Escherichia coli 536)

8e-109

50) yedV
( YP_689458.1 )

2-component sensor protein

NC_008258
(Shigella flexneri 8401)

1e-108

51) yedV
( YP_002999663.1 )

sensory kinase in two-component regulatory system with YedW

NC_012892
(Escherichia coli BL21(DE3))

3e-107

52) yedV
( YP_003054508.1 )

sensory kinase in two-component regulatory system with YedW

NC_012971
(Escherichia coli BL21(DE3))

3e-107

53) yedV
( YP_003045080.1 )

putative sensory kinase in two-component regulatory system with YedW

NC_012967
(Escherichia coli REL606)

3e-107

54) yedV
( YP_003222142.1 )

sensory kinase in two-component regulatory system with YedW

NC_013353
(Escherichia coli 12009)

3e-107

55) APECO78_13620
( YP_007381897.1 )

two-component sensor kinase

NC_020163
(Escherichia coli APEC O78)

3e-107

56) EcE24377A_2199
( YP_001463268.1 )

heavy metal sensor histidine kinase

NC_009801
(Escherichia coli E24377A)

3e-107

57) ECSE_2197
( YP_002293472.1 )

two-component sensor kinase

NC_011415
(Escherichia coli SE11)

3e-107

58) EKO11_1808
( YP_005277490.1 )

heavy metal sensor signal transduction histidine kinase

NC_016902
(Escherichia coli KO11FL)

4e-107

59) yedV
( YP_006164902.1 )

two-component sensor kinase

NC_017660
(Escherichia coli KO11FL)

4e-107

60) LY180_10190
( YP_008565137.1 )

sensor histidine kinase

NC_022364
(Escherichia coli LY180)

4e-107

61) EcSMS35_1217
( YP_001743278.1 )

heavy metal sensor histidine kinase

NC_010498
(Escherichia coli SMS-3-5)

4e-107

62) yedV
( YP_006124832.1 )

sensory kinase in two-component regulatory system with YedW

NC_017635
(Escherichia coli W)

4e-107

63) yedV
( YP_006173545.1 )

two-component sensor kinase

NC_017664
(Escherichia coli W)

4e-107

64) O3M_09735
( YP_006769598.1 )

sensory kinase in two-component regulatory system with YedW

NC_018650
(Escherichia coli 2009EL-2050)

4e-107

65) O3O_15855
( YP_006783723.1 )

sensory kinase in two-component regulatory system with YedW

NC_018661
(Escherichia coli 2009EL-2071)

4e-107

66) O3K_09770
( YP_006778651.1 )

sensory kinase in two-component regulatory system with YedW

NC_018658
(Escherichia coli 2011C-3493)

4e-107

67) yedV
( YP_002403240.1 )

sensory kinase in two-component regulatory system with YedW

NC_011748
(Escherichia coli 55989)

4e-107

68) EcDH1_1683
( YP_006091634.1 )

heavy metal sensor signal transduction histidine kinase

NC_017625
(Escherichia coli DH1)

4e-107

69) yedV
( YP_006129309.1 )

putative sensory kinase in two-component regulatory system with YedW

NC_017638
(Escherichia coli DH1)

4e-107

70) ECBD_1679
( YP_003035917.1 )

heavy metal sensor signal transduction histidine kinase

NC_012947
(Escherichia coli Escherichia coli BL21-Gold(DE3)pLysS AG)

4e-107

71) yedV
( YP_001730928.1 )

sensory kinase in two-component regulatory system with YedW

NC_010473
(Escherichia coli K-12)

4e-107

72) yedV
( YP_002926965.1 )

putative sensory kinase in two-component regulatory system with YedW

NC_012759
(Escherichia coli K-12)

4e-107

73) yedV
( YP_007557227.1 )

predicted sensory kinase in two-component regulatory system with YedW

NC_020518
(Escherichia coli K-12)

4e-107

74) yedV
( YP_490218.1 )

sensory kinase in two-component regulatory system with YedW

NC_007779
(Escherichia coli K-12)

4e-107

75) yedV
( NP_416477.1 )

predicted sensory kinase in two-component regulatory system with YedW

NC_000913
(Escherichia coli K12)

4e-107

76) yedV
( YP_006168093.1 )

Putative sensor-like histidine kinase yedV

NC_017663
(Escherichia coli P12b)

4e-107

77) UMNK88_2445
( YP_006134189.1 )

sensor-like histidine kinase YedV

NC_017641
(Escherichia coli UMNK88)

4e-107

78) EcHS_A2069
( YP_001458754.1 )

heavy metal sensor histidine kinase

NC_009800
(Escherichia coli HS)

5e-107

79) yedV
( YP_002387459.1 )

sensory kinase in two-component regulatory system with YedW

NC_011741
(Escherichia coli IAI1)

5e-107

80) EcolC_1677
( YP_001724656.1 )

heavy metal sensor signal transduction histidine kinase

NC_010468
(Escherichia coli ATCC 8739)

5e-107

81) yedV
( YP_003499961.1 )

Heavy metal sensor histidine kinase

NC_013941
(Escherichia coli CB9615)

5e-107

82) yedV
( YP_002329595.1 )

sensory kinase in two-component regulatory system with YedW

NC_011601
(Escherichia coli E2348/69)

5e-107

83) ECH74115_2747
( YP_002271081.1 )

heavy metal sensor histidine kinase

NC_011353
(Escherichia coli EC4115)

5e-107

84) ECO55CA74_11630
( YP_006159463.1 )

Heavy metal sensor histidine kinase

NC_017656
(Escherichia coli RM12579)

5e-107

85) ECs2706
( NP_310733.1 )

2-component sensor protein

NC_002695
(Escherichia coli Sakai)

5e-107

86) ECSF_1817
( YP_003349807.1 )

two-component sensor kinase

NC_013654
(Escherichia coli SE15)

5e-107

87) yedV
( YP_003078457.1 )

sensory kinase in two-component regulatory system with YedW

NC_013008
(Escherichia coli TW14359)

5e-107

88) CDCO157_2500
( YP_006313370.1 )

putative 2-component sensor protein

NC_017906
(Escherichia coli Xuzhou21)

5e-107

89) SSON53_11990
( YP_005456932.1 )

2-component sensor protein

NC_016822
(Shigella sonnei 53G)

8e-107

90) yedV
( YP_310925.1 )

2-component sensor protein

NC_007384
(Shigella sonnei Ss046)

8e-107

91) yedV
( YP_003234960.1 )

putative sensory kinase in two-component regulatory system with YedW

NC_013364
(Escherichia coli 11128)

2e-106

92) yedV
( YP_002398173.1 )

sensory kinase in two-component regulatory system with YedW

NC_011745
(Escherichia coli ED1a)

2e-106

93) SbBS512_E0915
( YP_001879603.1 )

heavy metal sensor histidine kinase

NC_010658
(Shigella boydii CDC 3083-94)

2e-106

94) yedV
( YP_003229828.1 )

sensory kinase in two-component regulatory system with YedW

NC_013361
(Escherichia coli 11368)

2e-106

95) yedV
( YP_407519.1 )

2-component sensor protein

NC_007613
(Shigella boydii Sb227)

7e-106

96) yedV
( YP_006106284.1 )

heavy metal sensor histidine kinase

NC_017631
(Escherichia coli ABU 83972)

8e-106

97) yedV
( NP_754278.1 )

sensor-like histidine kinase yedV

NC_004431
(Escherichia coli CFT073)

8e-106

98) yedV
( YP_006154308.1 )

putative sensor-like histidine kinase yedV

NC_017652
(Escherichia coli clone D i14)

8e-106

99) yedV
( YP_006149389.1 )

putative sensor-like histidine kinase yedV

NC_017651
(Escherichia coli clone D i2)

8e-106

100) yedV
( NP_288427.1 )

2-component sensor protein

NC_002655
(Escherichia coli EDL933)

9e-106

101) yedV
( YP_006144312.1 )

putative sensory kinase in two-component regulatory system with YedW

NC_017646
(Escherichia coli CE10)

9e-106

102) yedV
( YP_002407101.1 )

sensory kinase in two-component regulatory system with YedW

NC_011750
(Escherichia coli IAI39)

9e-106

103) EC042_2124
( YP_006096430.1 )

two-component sensor kinase

NC_017626
(Escherichia coli 042)

2e-100

104) yedV
( YP_853017.1 )

2-component sensor protein

NC_008563
(Escherichia coli APEC O1)

3e-100

105) ETEC_2068
( YP_006115634.1 )

two-component sensor kinase

NC_017633
(Escherichia coli ETEC H10407)

3e-100

106) ECOK1_2081
( YP_006101261.1 )

heavy metal sensor histidine kinase

NC_017628
(Escherichia coli IHE3034)

3e-100

107) yedV
( YP_008571896.1 )

putative sensor-like histidine kinase YedV

NC_022370
(Escherichia coli PMV-1)

3e-100

108) yedV
( YP_002391735.1 )

sensory kinase in two-component regulatory system with YedW

NC_011742
(Escherichia coli S88)

3e-100

109) UM146_07360
( YP_006110375.1 )

sensory kinase in two-component regulatory system with YedW

NC_017632
(Escherichia coli UM146)

3e-100

110) yedV
( YP_541171.1 )

2-component sensor protein

NC_007946
(Escherichia coli UTI89)

3e-100

111) yedV
( YP_006139016.1 )

Putative sensor like histidine kinase

NC_017644
(Escherichia coli NA114)

7e-98

112) yedV
( YP_006318930.1 )

heavy metal sensor histidine kinase YedV

NC_017910
(Escherichia blattae DSM 4481)

4e-85

113) yedV
( YP_006341191.1 )

sensor-like histidine kinase YedV

NC_017933
(Cronobacter sakazakii ES15)

6e-85

114) yedV
( YP_003212465.1 )

sensor-like histidine kinase yedV

NC_013282
(Cronobacter turicensis z3032)

1e-84

115) CSSP291_19160
( YP_007442684.1 )

sensor-like histidine kinase YedV

NC_020260
(Cronobacter sakazakii Sp291)

2e-84

116) ESA_04135
( YP_001440152.1 )

hypothetical protein

NC_009778
(Cronobacter sakazakii ATCC BAA-894)

1e-83

• Sequence Alignments

1) SeD_A1170 in NC_011205


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  709 bits (2680),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 446/454 (99%), Positives = 449/454 (99%), Gaps = 0/454 (0%)

Query  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60
            MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   RPENLPLYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120
            RPENL+LYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  121  VQGTELTAVRVNARSGDDPLTLTIARLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180
            VQGTELTAVRVNARSGDDPLTLTIA LATERRQMLTQYRRNSLLISLIAILVCSALSPLV
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  181  IRNGLRAITSLSRLTAATDSGTLRQPLAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240
            IRN+LRAITSLSRLTAA+DSGTLR P AEQALPVELRPLGQALNTMRQKLSDDFERLNQF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300
            ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360
            HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNARHTAGFGLGLS  420
            AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNA HTAGF LGLS
Sbjct  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLS  420

Query  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454
            LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS
Sbjct  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454

2) CFSAN001992_06170 in NC_020307


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  709 bits (2680),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 445/454 (99%), Positives = 449/454 (99%), Gaps = 0/454 (0%)

Query  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60
            MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   RPENLPLYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120
            RPENL+LYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  121  VQGTELTAVRVNARSGDDPLTLTIARLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180
            VQGTELTAVRVNARSGDDPLTLTIA LATERRQMLTQYRRNSLLISLIAILVCSALSPLV
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  181  IRNGLRAITSLSRLTAATDSGTLRQPLAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240
            IRN+LRAITSLSRLTAA+DSGTLR P AEQALPVELRPLGQALNTMRQKLSDDFERLNQF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  241  ADDLAHELRTPINILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300
            ADDLAHELRTP+NILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360
            HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNARHTAGFGLGLS  420
            AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNA HTAGF LGLS
Sbjct  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLS  420

Query  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454
            LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS
Sbjct  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454

3) SeAg_B1054 in NC_011149


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  708 bits (2678),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 445/454 (99%), Positives = 449/454 (99%), Gaps = 0/454 (0%)

Query  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60
            MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   RPENLPLYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120
            RPENL+LYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  121  VQGTELTAVRVNARSGDDPLTLTIARLATERRQMLAQYRRNSLLISLIAILVCSALSPLV  180
            VQGTELTAVRVNARSGDDPLTLTIA LATERRQML+QYRRNSLLISLIAILVCSALSPLV
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  181  IRNGLRAITSLSRLTAATDSGTLRQPLAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240
            IRN+LRAITSLSRLTAA+DSGTLR P AEQALPVELRPLGQALNTMRQKLSDDFERLNQF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300
            ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360
            HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNARHTAGFGLGLS  420
            AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNA HTAGF LGLS
Sbjct  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLS  420

Query  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454
            LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS
Sbjct  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454

4) copS in NC_006905


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  708 bits (2678),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 445/454 (99%), Positives = 449/454 (99%), Gaps = 0/454 (0%)

Query  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60
            MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   RPENLPLYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120
            RPENL+LYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  121  VQGTELTAVRVNARSGDDPLTLTIARLATERRQMLAQYRRNSLLISLIAILVCSALSPLV  180
            VQGTELTAVRVNARSGDDPLTLTIA LATERRQML+QYRRNSLLISLIAILVCSALSPLV
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  181  IRNGLRAITSLSRLTAATDSGTLRQPLAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240
            IRN+LRAITSLSRLTAA+DSGTLR P AEQALPVELRPLGQALNTMRQKLSDDFERLNQF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300
            ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360
            HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNARHTAGFGLGLS  420
            AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNA HTAGF LGLS
Sbjct  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLS  420

Query  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454
            LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS
Sbjct  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454

5) CFSAN002050_11870 in NC_021818


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  708 bits (2677),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 445/454 (99%), Positives = 449/454 (99%), Gaps = 0/454 (0%)

Query  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60
            MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   RPENLPLYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120
            RPENL+LYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  121  VQGTELTAVRVNARSGDDPLTLTIARLATERRQMLTQYRRNSLLMSLIAILVCSALSPLV  180
            VQGTELTAVRVNARSGDDPLTLTIA LATERRQMLTQYRRNSLL+SLIAILVCSALSPLV
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  181  IRNGLRAITSLSRLTAATDSGTLRQPLAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240
            IRN+LRAITSLSRLTAA+DSGTLR P AEQALPVELRPLGQALNTMRQKLSDDFERLNQF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300
            ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360
            HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNARHTAGFGLGLS  420
            AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNA HTAGF LGLS
Sbjct  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLS  420

Query  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454
            LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS
Sbjct  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454

6) copS in NC_011294


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  708 bits (2677),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 445/454 (99%), Positives = 449/454 (99%), Gaps = 0/454 (0%)

Query  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60
            MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   RPENLPLYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120
            RPENL+LYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  121  VQGTELTAVRVNARSGDDPLTLTIARLATERRQMLTQYRRNSLLMSLIAILVCSALSPLV  180
            VQGTELTAVRVNARSGDDPLTLTIA LATERRQMLTQYRRNSLL+SLIAILVCSALSPLV
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  181  IRNGLRAITSLSRLTAATDSGTLRQPLAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240
            IRN+LRAITSLSRLTAA+DSGTLR P AEQALPVELRPLGQALNTMRQKLSDDFERLNQF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300
            ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360
            HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNARHTAGFGLGLS  420
            AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNA HTAGF LGLS
Sbjct  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLS  420

Query  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454
            LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS
Sbjct  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454

7) copS in NC_011274


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  708 bits (2677),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 445/454 (99%), Positives = 449/454 (99%), Gaps = 0/454 (0%)

Query  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60
            MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   RPENLPLYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120
            RPENL+LYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  121  VQGTELTAVRVNARSGDDPLTLTIARLATERRQMLTQYRRNSLLMSLIAILVCSALSPLV  180
            VQGTELTAVRVNARSGDDPLTLTIA LATERRQMLTQYRRNSLL+SLIAILVCSALSPLV
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  181  IRNGLRAITSLSRLTAATDSGTLRQPLAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240
            IRN+LRAITSLSRLTAA+DSGTLR P AEQALPVELRPLGQALNTMRQKLSDDFERLNQF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300
            ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360
            HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNARHTAGFGLGLS  420
            AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNA HTAGF LGLS
Sbjct  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLS  420

Query  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454
            LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS
Sbjct  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454

8) SPAB_02460 in NC_010102


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  708 bits (2677),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 445/454 (99%), Positives = 449/454 (99%), Gaps = 0/454 (0%)

Query  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60
            MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   RPENLPLYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120
            RPENL+LYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  121  VQGTELTAVRVNARSGDDPLTLTIARLATERRQMLTQYRRNSLLMSLIAILVCSALSPLV  180
            VQGTELTAVRVNARSGDDPLTLTIA LATERRQMLTQYRRNSLL+SLIAILVCSALSPLV
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  181  IRNGLRAITSLSRLTAATDSGTLRQPLAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240
            IRN+LRAITSLSRLTAA+DSGTLR P AEQALPVELRPLGQALNTMRQKLSDDFERLNQF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300
            ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360
            HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNARHTAGFGLGLS  420
            AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNA HTAGF LGLS
Sbjct  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLS  420

Query  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454
            LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS
Sbjct  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454

9) I137_08920 in NC_021984


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  708 bits (2677),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 445/454 (99%), Positives = 449/454 (99%), Gaps = 0/454 (0%)

Query  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60
            MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   RPENLPLYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120
            RPENL+LYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  121  VQGTELTAVRVNARSGDDPLTLTIARLATERRQMLTQYRRNSLLMSLIAILVCSALSPLV  180
            VQGTELTAVRVNARSGDDPLTLTIA LATERRQMLTQYRRNSLL+SLIAILVCSALSPLV
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  181  IRNGLRAITSLSRLTAATDSGTLRQPLAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240
            IRN+LRAITSLSRLTAA+DSGTLR P AEQALPVELRPLGQALNTMRQKLSDDFERLNQF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300
            ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360
            HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNARHTAGFGLGLS  420
            AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNA HTAGF LGLS
Sbjct  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLS  420

Query  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454
            LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS
Sbjct  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454

10) SEEH1578_14700 in NC_021810


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  708 bits (2678),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 444/454 (98%), Positives = 449/454 (99%), Gaps = 0/454 (0%)

Query  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60
            MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   RPENLPLYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120
            RPENL+LYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  121  VQGTELTAVRVNARSGDDPLTLTIARLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180
            VQGTELTAVRVNARSGDDPLTLTIA LATERRQMLTQYRRNSLLISLIAILVCSALSPLV
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  181  IRNGLRAITSLSRLTAATDSGTLRQPLAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240
            IRN+LRAITSLSRLTAA+DSGTLR P AEQALPVELRPLGQALNTMRQKLSDDFERLNQF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300
            ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  301  HQNITVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360
            HQNI+VKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNARHTAGFGLGLS  420
            AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNA HTAGF LGLS
Sbjct  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLS  420

Query  421  LVNAIALLHGGAASYRYADEHNIFSVRLPDSGDS  454
            LVNAIALLHGG+ASYRYADEHNIFSVRLPDSGDS
Sbjct  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454

11) SU5_01726 in NC_017623


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  708 bits (2678),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 444/454 (98%), Positives = 449/454 (99%), Gaps = 0/454 (0%)

Query  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60
            MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   RPENLPLYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120
            RPENL+LYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  121  VQGTELTAVRVNARSGDDPLTLTIARLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180
            VQGTELTAVRVNARSGDDPLTLTIA LATERRQMLTQYRRNSLLISLIAILVCSALSPLV
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  181  IRNGLRAITSLSRLTAATDSGTLRQPLAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240
            IRN+LRAITSLSRLTAA+DSGTLR P AEQALPVELRPLGQALNTMRQKLSDDFERLNQF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300
            ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  301  HQNITVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360
            HQNI+VKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNARHTAGFGLGLS  420
            AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNA HTAGF LGLS
Sbjct  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLS  420

Query  421  LVNAIALLHGGAASYRYADEHNIFSVRLPDSGDS  454
            LVNAIALLHGG+ASYRYADEHNIFSVRLPDSGDS
Sbjct  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454

12) CFSAN002069_03545 in NC_021812


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  708 bits (2678),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 444/454 (98%), Positives = 449/454 (99%), Gaps = 0/454 (0%)

Query  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60
            MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   RPENLPLYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120
            RPENL+LYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  121  VQGTELTAVRVNARSGDDPLTLTIARLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180
            VQGTELTAVRVNARSGDDPLTLTIA LATERRQMLTQYRRNSLLISLIAILVCSALSPLV
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  181  IRNGLRAITSLSRLTAATDSGTLRQPLAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240
            IRN+LRAITSLSRLTAA+DSGTLR P AEQALPVELRPLGQALNTMRQKLSDDFERLNQF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300
            ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  301  HQNITVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360
            HQNI+VKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNARHTAGFGLGLS  420
            AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNA HTAGF LGLS
Sbjct  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLS  420

Query  421  LVNAIALLHGGAASYRYADEHNIFSVRLPDSGDS  454
            LVNAIALLHGG+ASYRYADEHNIFSVRLPDSGDS
Sbjct  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454

13) SeHA_C1205 in NC_011083


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  708 bits (2678),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 444/454 (98%), Positives = 449/454 (99%), Gaps = 0/454 (0%)

Query  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60
            MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   RPENLPLYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120
            RPENL+LYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  121  VQGTELTAVRVNARSGDDPLTLTIARLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180
            VQGTELTAVRVNARSGDDPLTLTIA LATERRQMLTQYRRNSLLISLIAILVCSALSPLV
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  181  IRNGLRAITSLSRLTAATDSGTLRQPLAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240
            IRN+LRAITSLSRLTAA+DSGTLR P AEQALPVELRPLGQALNTMRQKLSDDFERLNQF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300
            ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  301  HQNITVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360
            HQNI+VKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNARHTAGFGLGLS  420
            AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNA HTAGF LGLS
Sbjct  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLS  420

Query  421  LVNAIALLHGGAASYRYADEHNIFSVRLPDSGDS  454
            LVNAIALLHGG+ASYRYADEHNIFSVRLPDSGDS
Sbjct  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454

14) SE451236_11325 in NC_021820


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  706 bits (2671),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 442/454 (98%), Positives = 449/454 (99%), Gaps = 0/454 (0%)

Query  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60
            MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   RPENLPLYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLTKNITRETLFRQA  120
            RPENL+LYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPL+KNITRETLFRQA
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  121  VQGTELTAVRVSARSGDDPLTLTIARLATERRQMLAQYRRNSLLMSLIAILVCSALSPLV  180
            VQGTELTAVRV+ARSGDDPLTLTIA LATERRQML+QYRRNSLL+SLIAILVCSALSPLV
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  181  IRNGLRAITSLSRLTAATDSGTLRQPLAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240
            IRN+LRAITSLSRLTAA+DSGTLR P AEQALPVELRPLGQALNTMRQKLSDDFERLNQF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300
            ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360
            HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNARHTAGFGLGLS  420
            AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNA HTAGF LGLS
Sbjct  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLS  420

Query  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454
            LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS
Sbjct  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454

15) SeSA_A1159 in NC_011094


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  706 bits (2672),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 444/454 (98%), Positives = 449/454 (99%), Gaps = 0/454 (0%)

Query  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60
            MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   RPENLPLYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120
            RPENL+LYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  121  VQGTELTAVRVNARSGDDPLTLTIARLATERRQMLAQYRRNSLLISLIAILVCSALSPLV  180
            VQGTELTAVRVNARSGDDPLTLTIA LATERRQML+QYRRNSLLISLIAILVCSALSPLV
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  181  IRNGLRAITSLSRLTAATDSGTLRQSLAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240
            IRN+LRAITSLSRLTAA+DSGTLR + AEQALPVELRPLGQALNTMRQKLSDDFERLNQF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300
            ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360
            HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNARHTAGFGLGLS  420
            AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNA HTAGF LGLS
Sbjct  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLS  420

Query  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454
            LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS
Sbjct  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454

16) copS in NC_016856


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  706 bits (2671),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 442/454 (98%), Positives = 449/454 (99%), Gaps = 0/454 (0%)

Query  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60
            MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   RPENLPLYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLTKNITRETLFRQA  120
            RPENL+LYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPL+KNITRETLFRQA
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  121  VQGTELTAVRVSARSGDDPLTLTIARLATERRQMLAQYRRNSLLMSLIAILVCSALSPLV  180
            VQGTELTAVRV+ARSGDDPLTLTIA LATERRQML+QYRRNSLL+SLIAILVCSALSPLV
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  181  IRNGLRAITSLSRLTAATDSGTLRQPLAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240
            IRN+LRAITSLSRLTAA+DSGTLR P AEQALPVELRPLGQALNTMRQKLSDDFERLNQF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300
            ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360
            HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNARHTAGFGLGLS  420
            AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNA HTAGF LGLS
Sbjct  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLS  420

Query  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454
            LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS
Sbjct  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454

17) STMMW_11051 in NC_016854


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  706 bits (2671),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 442/454 (98%), Positives = 449/454 (99%), Gaps = 0/454 (0%)

Query  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60
            MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   RPENLPLYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLTKNITRETLFRQA  120
            RPENL+LYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPL+KNITRETLFRQA
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  121  VQGTELTAVRVSARSGDDPLTLTIARLATERRQMLAQYRRNSLLMSLIAILVCSALSPLV  180
            VQGTELTAVRV+ARSGDDPLTLTIA LATERRQML+QYRRNSLL+SLIAILVCSALSPLV
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  181  IRNGLRAITSLSRLTAATDSGTLRQPLAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240
            IRN+LRAITSLSRLTAA+DSGTLR P AEQALPVELRPLGQALNTMRQKLSDDFERLNQF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300
            ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360
            HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNARHTAGFGLGLS  420
            AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNA HTAGF LGLS
Sbjct  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLS  420

Query  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454
            LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS
Sbjct  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454

18) copS in NC_003197


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  706 bits (2671),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 442/454 (98%), Positives = 449/454 (99%), Gaps = 0/454 (0%)

Query  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60
            MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   RPENLPLYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLTKNITRETLFRQA  120
            RPENL+LYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPL+KNITRETLFRQA
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  121  VQGTELTAVRVSARSGDDPLTLTIARLATERRQMLAQYRRNSLLMSLIAILVCSALSPLV  180
            VQGTELTAVRV+ARSGDDPLTLTIA LATERRQML+QYRRNSLL+SLIAILVCSALSPLV
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  181  IRNGLRAITSLSRLTAATDSGTLRQPLAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240
            IRN+LRAITSLSRLTAA+DSGTLR P AEQALPVELRPLGQALNTMRQKLSDDFERLNQF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300
            ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360
            HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNARHTAGFGLGLS  420
            AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNA HTAGF LGLS
Sbjct  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLS  420

Query  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454
            LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS
Sbjct  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454

19) copS in NC_016810


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  706 bits (2671),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 442/454 (98%), Positives = 449/454 (99%), Gaps = 0/454 (0%)

Query  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60
            MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   RPENLPLYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLTKNITRETLFRQA  120
            RPENL+LYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPL+KNITRETLFRQA
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  121  VQGTELTAVRVSARSGDDPLTLTIARLATERRQMLAQYRRNSLLMSLIAILVCSALSPLV  180
            VQGTELTAVRV+ARSGDDPLTLTIA LATERRQML+QYRRNSLL+SLIAILVCSALSPLV
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  181  IRNGLRAITSLSRLTAATDSGTLRQPLAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240
            IRN+LRAITSLSRLTAA+DSGTLR P AEQALPVELRPLGQALNTMRQKLSDDFERLNQF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300
            ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360
            HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNARHTAGFGLGLS  420
            AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNA HTAGF LGLS
Sbjct  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLS  420

Query  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454
            LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS
Sbjct  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454

20) copS in NC_016857


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  706 bits (2671),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 442/454 (98%), Positives = 449/454 (99%), Gaps = 0/454 (0%)

Query  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60
            MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   RPENLPLYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLTKNITRETLFRQA  120
            RPENL+LYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPL+KNITRETLFRQA
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  121  VQGTELTAVRVSARSGDDPLTLTIARLATERRQMLAQYRRNSLLMSLIAILVCSALSPLV  180
            VQGTELTAVRV+ARSGDDPLTLTIA LATERRQML+QYRRNSLL+SLIAILVCSALSPLV
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  181  IRNGLRAITSLSRLTAATDSGTLRQPLAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240
            IRN+LRAITSLSRLTAA+DSGTLR P AEQALPVELRPLGQALNTMRQKLSDDFERLNQF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300
            ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360
            HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNARHTAGFGLGLS  420
            AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNA HTAGF LGLS
Sbjct  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLS  420

Query  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454
            LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS
Sbjct  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454

21) STMDT12_C11140 in NC_016860


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  706 bits (2671),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 442/454 (98%), Positives = 449/454 (99%), Gaps = 0/454 (0%)

Query  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60
            MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   RPENLPLYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLTKNITRETLFRQA  120
            RPENL+LYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPL+KNITRETLFRQA
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  121  VQGTELTAVRVSARSGDDPLTLTIARLATERRQMLAQYRRNSLLMSLIAILVCSALSPLV  180
            VQGTELTAVRV+ARSGDDPLTLTIA LATERRQML+QYRRNSLL+SLIAILVCSALSPLV
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  181  IRNGLRAITSLSRLTAATDSGTLRQPLAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240
            IRN+LRAITSLSRLTAA+DSGTLR P AEQALPVELRPLGQALNTMRQKLSDDFERLNQF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300
            ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360
            HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNARHTAGFGLGLS  420
            AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNA HTAGF LGLS
Sbjct  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLS  420

Query  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454
            LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS
Sbjct  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454

22) STU288_01805 in NC_021151


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  706 bits (2671),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 442/454 (98%), Positives = 449/454 (99%), Gaps = 0/454 (0%)

Query  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60
            MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   RPENLPLYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLTKNITRETLFRQA  120
            RPENL+LYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPL+KNITRETLFRQA
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  121  VQGTELTAVRVSARSGDDPLTLTIARLATERRQMLAQYRRNSLLMSLIAILVCSALSPLV  180
            VQGTELTAVRV+ARSGDDPLTLTIA LATERRQML+QYRRNSLL+SLIAILVCSALSPLV
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  181  IRNGLRAITSLSRLTAATDSGTLRQPLAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240
            IRN+LRAITSLSRLTAA+DSGTLR P AEQALPVELRPLGQALNTMRQKLSDDFERLNQF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300
            ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360
            HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNARHTAGFGLGLS  420
            AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNA HTAGF LGLS
Sbjct  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLS  420

Query  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454
            LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS
Sbjct  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454

23) copS in NC_016863


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  706 bits (2671),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 442/454 (98%), Positives = 449/454 (99%), Gaps = 0/454 (0%)

Query  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60
            MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   RPENLPLYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLTKNITRETLFRQA  120
            RPENL+LYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPL+KNITRETLFRQA
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  121  VQGTELTAVRVSARSGDDPLTLTIARLATERRQMLAQYRRNSLLMSLIAILVCSALSPLV  180
            VQGTELTAVRV+ARSGDDPLTLTIA LATERRQML+QYRRNSLL+SLIAILVCSALSPLV
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  181  IRNGLRAITSLSRLTAATDSGTLRQPLAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240
            IRN+LRAITSLSRLTAA+DSGTLR P AEQALPVELRPLGQALNTMRQKLSDDFERLNQF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300
            ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360
            HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNARHTAGFGLGLS  420
            AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNA HTAGF LGLS
Sbjct  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLS  420

Query  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454
            LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS
Sbjct  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454

24) CFSAN001921_11700 in NC_021814


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  706 bits (2671),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 442/454 (98%), Positives = 449/454 (99%), Gaps = 0/454 (0%)

Query  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60
            MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   RPENLPLYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLTKNITRETLFRQA  120
            RPENL+LYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPL+KNITRETLFRQA
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  121  VQGTELTAVRVSARSGDDPLTLTIARLATERRQMLAQYRRNSLLMSLIAILVCSALSPLV  180
            VQGTELTAVRV+ARSGDDPLTLTIA LATERRQML+QYRRNSLL+SLIAILVCSALSPLV
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  181  IRNGLRAITSLSRLTAATDSGTLRQPLAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240
            IRN+LRAITSLSRLTAA+DSGTLR P AEQALPVELRPLGQALNTMRQKLSDDFERLNQF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300
            ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360
            HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNARHTAGFGLGLS  420
            AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNA HTAGF LGLS
Sbjct  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLS  420

Query  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454
            LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS
Sbjct  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454

25) SSPA1631 in NC_011147


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  704 bits (2663),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 444/454 (98%), Positives = 448/454 (99%), Gaps = 0/454 (0%)

Query  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60
            MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   RPENLPLYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120
            RPENL+LYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  121  VQGTELTAVRVNARSGDDPLTLTIARLATERRQMLAQYRRNSLLISLIAILVCSALSPLV  180
            VQGTELTAVRVNARSGDDPLTLTIA LATERRQML+QYRRNSLLISLIAILVCSALSPLV
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  181  IRNGLRAITSLSRLTAATDSGTLRQPLAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240
            IRN+LRAITSLSRLTAA+DSGTLR P AEQALPVELRPLGQALNTMRQKLSDDFERLNQF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300
            ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  301  HQNIAVKKQPVSLNALVENMLDYLSLLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360
            HQNIAVKKQPVSLNALVENMLDYLS LAEEKRICFINQCQGTVWADEILLQRVLSNLLTN
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNARHTAGFGLGLS  420
            AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNA HTAGF LGLS
Sbjct  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLS  420

Query  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454
            LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS
Sbjct  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454

26) copS in NC_006511


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  704 bits (2663),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 444/454 (98%), Positives = 448/454 (99%), Gaps = 0/454 (0%)

Query  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60
            MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   RPENLPLYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120
            RPENL+LYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  121  VQGTELTAVRVNARSGDDPLTLTIARLATERRQMLAQYRRNSLLISLIAILVCSALSPLV  180
            VQGTELTAVRVNARSGDDPLTLTIA LATERRQML+QYRRNSLLISLIAILVCSALSPLV
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  181  IRNGLRAITSLSRLTAATDSGTLRQPLAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240
            IRN+LRAITSLSRLTAA+DSGTLR P AEQALPVELRPLGQALNTMRQKLSDDFERLNQF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300
            ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  301  HQNIAVKKQPVSLNALVENMLDYLSLLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360
            HQNIAVKKQPVSLNALVENMLDYLS LAEEKRICFINQCQGTVWADEILLQRVLSNLLTN
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNARHTAGFGLGLS  420
            AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNA HTAGF LGLS
Sbjct  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLS  420

Query  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454
            LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS
Sbjct  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454

27) SEEB0189_14095 in NC_021844


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  703 bits (2657),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 442/454 (98%), Positives = 447/454 (99%), Gaps = 0/454 (0%)

Query  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60
            MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   RPENLPLYFNRMVDTKQDILLIHSVTGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120
            RPENL+LYFNRMVDTKQDILLIHS TGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  121  VQGTELTAVRVSARSGDDPLTLTIARLATERRQMLTQYRRNSLLMSLIAILVCSALSPLV  180
            VQGTELTAVRV+ARSGDDPLTLTIA LATERRQMLTQYRRNSLL+SLIAILVCSALSPLV
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  181  IRNGLRAITSLSRLTAATDSGTLRQPLAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240
            IRN+LRAITSLSRLTAA+DSGTLR P AEQALPVELRPLGQALNTMRQKLSDDFERLNQF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300
            ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  301  HQNIAVKKQPVSLNALVENMLDYLSLLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360
            HQNIAVKKQPVSLNALVENMLDYLS LAEEKRICFINQCQGTVWADEILLQRVLSNLLTN
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNARHTAGFGLGLS  420
            AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNA HTAGF LGLS
Sbjct  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLS  420

Query  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454
            LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS
Sbjct  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454

28) SNSL254_A1190 in NC_011080


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  702 bits (2656),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 441/454 (98%), Positives = 447/454 (99%), Gaps = 0/454 (0%)

Query  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60
            MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   RPENLPLYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120
            RPENL+LYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  121  AQGTELTAVRVSARSGDDPLTLTIARLATERRQMLAQYRRNSLLMSLIAILVCSALSPLV  180
             QGTELTAVRV+ARSGDDPLTLTIA LATERRQML+QYRRNSLL+SLIAILVCSALSPLV
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  181  IRNGLRAITLLSRLTAATDSGTLRQPLAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240
            IRN+LRAIT LSRLTAA+DSGTLR P AEQALPVELRPLGQALNTMRQKLSDDFERLNQF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300
            ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360
            HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNARHTAGFGLGLS  420
            AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNA HTAGF LGLS
Sbjct  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLS  420

Query  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454
            LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS
Sbjct  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454

29) copS in NC_003198


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  702 bits (2654),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 441/454 (98%), Positives = 447/454 (99%), Gaps = 0/454 (0%)

Query  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60
            MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   RPENLPLYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120
            RPENL+LYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  121  VQGTELTAVRVNARSGDNPLTLTIARLATERRQMLAQYRRNSLLISLIAILVCSALSPLV  180
            VQGTELTAVRVNARSGD+PLTLTIA LATERRQML+QYRRNSLLISLIAILVCSALSPLV
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  181  IRNGLRAITSLSRLTAATDSGTLRQPLAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240
            IRN+LRAITSLSRLTAA+DSGTLR P AEQALPVELRPLGQALNTMRQKLSDDFERLNQF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300
            ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKHICFINQCQGTVWADEILLQRVLSNLLTN  360
            HQNIAVKKQPVSLNALVENMLDYLSPLAEEK+ICFINQCQGTVWADEILLQRVLSNLLTN
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSPTADADKLFRRFWRGDNARHTAGFGLGLS  420
            AIRYSDENAVIRIESAYDDNVAEIRVANPGS  ADADKLFRRFWRGDNA HTAGF LGLS
Sbjct  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLS  420

Query  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454
            LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS
Sbjct  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454

30) SBOV10081 in NC_022241


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  699 bits (2643),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 440/449 (98%), Positives = 444/449 (99%), Gaps = 0/449 (0%)

Query  1    MTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGARPENL  60
            MTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGARPENL
Sbjct  6    MTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGARPENL  65

Query  61   PLYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQAVQGTE  120
            +LYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQAVQGTE
Sbjct  66   ALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQAVQGTE  125

Query  121  LTAVRVNARSGDDPLTLTIARLATERRQMLTQYRRNSLLMSLIAILVCSALSPLVIRNGL  180
            LTAVRVNARSGDDPLTLTIA LATERRQMLTQYRRNSLL+SLIAILVCSALSPLVIRN+L
Sbjct  126  LTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLVIRNAL  185

Query  181  RAITSLSRLTAATDSGTLRQPLAEQALPVELRPLGQALNTMRQKLSDDFERLNQFADDLA  240
            RAITSLSRLTAA+DSGTLR P AEQALPVELRPLGQALNTMRQKLSDDFERLNQFADDLA
Sbjct  186  RAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQFADDLA  245

Query  241  HELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAEHQNIA  300
            HELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAEHQNIA
Sbjct  246  HELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAEHQNIA  305

Query  301  VKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTNAIRYS  360
            VKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTNAIRYS
Sbjct  306  VKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTNAIRYS  365

Query  361  DENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNARHTAGFGLGLSLVNAI  420
            DENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNA HTAGF LGLSLVNAI
Sbjct  366  DENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLSLVNAI  425

Query  421  ALLHGGSASYRYADEHNIFSVRLPDSGDS  449
            ALLHGGSASYRYADEHNIFSVRLPDSGDS
Sbjct  426  ALLHGGSASYRYADEHNIFSVRLPDSGDS  454

31) copS in NC_022221


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  699 bits (2643),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 440/449 (98%), Positives = 444/449 (99%), Gaps = 0/449 (0%)

Query  1    MTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGARPENL  60
            MTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGARPENL
Sbjct  6    MTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGARPENL  65

Query  61   PLYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQAVQGTE  120
            +LYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQAVQGTE
Sbjct  66   ALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQAVQGTE  125

Query  121  LTAVRVNARSGDDPLTLTIARLATERRQMLTQYRRNSLLMSLIAILVCSALSPLVIRNGL  180
            LTAVRVNARSGDDPLTLTIA LATERRQMLTQYRRNSLL+SLIAILVCSALSPLVIRN+L
Sbjct  126  LTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLVIRNAL  185

Query  181  RAITSLSRLTAATDSGTLRQPLAEQALPVELRPLGQALNTMRQKLSDDFERLNQFADDLA  240
            RAITSLSRLTAA+DSGTLR P AEQALPVELRPLGQALNTMRQKLSDDFERLNQFADDLA
Sbjct  186  RAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQFADDLA  245

Query  241  HELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAEHQNIA  300
            HELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAEHQNIA
Sbjct  246  HELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAEHQNIA  305

Query  301  VKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTNAIRYS  360
            VKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTNAIRYS
Sbjct  306  VKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTNAIRYS  365

Query  361  DENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNARHTAGFGLGLSLVNAI  420
            DENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNA HTAGF LGLSLVNAI
Sbjct  366  DENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLSLVNAI  425

Query  421  ALLHGGSASYRYADEHNIFSVRLPDSGDS  449
            ALLHGGSASYRYADEHNIFSVRLPDSGDS
Sbjct  426  ALLHGGSASYRYADEHNIFSVRLPDSGDS  454

32) copS in NC_012125


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  699 bits (2645),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 440/449 (98%), Positives = 444/449 (99%), Gaps = 0/449 (0%)

Query  1    MTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGARPENL  60
            MTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGARPENL
Sbjct  6    MTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGARPENL  65

Query  61   PLYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQAVQGTE  120
            +LYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQAVQGTE
Sbjct  66   ALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQAVQGTE  125

Query  121  LTAVRVNARSGDDPLTLTIARLATERRQMLAQYRRNSLLISLIAILVCSALSPLVIRNGL  180
            LTAVRVNARSGDDPLTLTIA LATERRQML+QYRRNSLLISLIAILVCSALSPLVIRN+L
Sbjct  126  LTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLVIRNAL  185

Query  181  RAITSLSRLTAATDSGTLRQPLAEQALPVELRPLGQALNTMRQKLSDDFERLNQFADDLA  240
            RAITSLSRLTAA+DSGTLR P AEQALPVELRPLGQALNTMRQKLSDDFERLNQFADDLA
Sbjct  186  RAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQFADDLA  245

Query  241  HELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAEHQNIA  300
            HELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAEHQNIA
Sbjct  246  HELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAEHQNIA  305

Query  301  VKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTNAIRYS  360
            VKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTNAIRYS
Sbjct  306  VKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTNAIRYS  365

Query  361  DENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNARHTAGFGLGLSLVNAI  420
            DENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNA HTAGF LGLSLVNAI
Sbjct  366  DENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLSLVNAI  425

Query  421  ALLHGGSASYRYADEHNIFSVRLPDSGDS  449
            ALLHGGSASYRYADEHNIFSVRLPDSGDS
Sbjct  426  ALLHGGSASYRYADEHNIFSVRLPDSGDS  454

33) copS in NC_017046


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  698 bits (2639),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 437/449 (98%), Positives = 444/449 (99%), Gaps = 0/449 (0%)

Query  1    MTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGARPENL  60
            MTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGARPENL
Sbjct  6    MTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGARPENL  65

Query  61   PLYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLTKNITRETLFRQAVQGTE  120
            +LYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPL+KNITRETLFRQAVQGTE
Sbjct  66   ALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQAVQGTE  125

Query  121  LTAVRVSARSGDDPLTLTIARLATERRQMLAQYRRNSLLMSLIAILVCSALSPLVIRNGL  180
            LTAVRV+ARSGDDPLTLTIA LATERRQML+QYRRNSLL+SLIAILVCSALSPLVIRN+L
Sbjct  126  LTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLVIRNAL  185

Query  181  RAITSLSRLTAATDSGTLRQPLAEQALPVELRPLGQALNTMRQKLSDDFERLNQFADDLA  240
            RAITSLSRLTAA+DSGTLR P AEQALPVELRPLGQALNTMRQKLSDDFERLNQFADDLA
Sbjct  186  RAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQFADDLA  245

Query  241  HELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAEHQNIA  300
            HELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAEHQNIA
Sbjct  246  HELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAEHQNIA  305

Query  301  VKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTNAIRYS  360
            VKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTNAIRYS
Sbjct  306  VKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTNAIRYS  365

Query  361  DENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNARHTAGFGLGLSLVNAI  420
            DENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNA HTAGF LGLSLVNAI
Sbjct  366  DENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLSLVNAI  425

Query  421  ALLHGGSASYRYADEHNIFSVRLPDSGDS  449
            ALLHGGSASYRYADEHNIFSVRLPDSGDS
Sbjct  426  ALLHGGSASYRYADEHNIFSVRLPDSGDS  454

34) STBHUCCB_19410 in NC_016832


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  698 bits (2640),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 440/454 (97%), Positives = 446/454 (99%), Gaps = 0/454 (0%)

Query  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60
            MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   RPENLPLYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120
            RPENL+LYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  121  VQGTELTAVRVNARSGDNPLTLTIARLATERRQMLAQYRRNSLLISLIAILVCSALSPLV  180
            VQGTELTAVRVNARSGD+PLTLTIA LATERRQML+QYRRNSLLISLIAILVCSALSPLV
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  181  IRNGLRAITSLSRLTAATDSGTLRQPLAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240
            IRN+LRAITSLSRLTAA+DSGTLR P AEQALPVELRPLGQALNTMRQKLSDDFERLNQF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300
            ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKHICFINQCQGTVWADEILLQRVLSNLLTN  360
            HQNIAVKKQPVSLNALVENMLDYLSPLAEEK+ICFINQCQGTVWADEILLQRVLSNLLTN
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSPTADADKLFRRFWRGDNARYTAGFGLGLS  420
            AIRYSDENAVIRIESAYDDNVAEIRVANPGS  ADADKLFRRFWRGDNA  TAGF LGLS
Sbjct  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLS  420

Query  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454
            LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS
Sbjct  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454

35) TY21A_09285 in NC_021176


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  698 bits (2640),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 440/454 (97%), Positives = 446/454 (99%), Gaps = 0/454 (0%)

Query  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60
            MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   RPENLPLYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120
            RPENL+LYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  121  VQGTELTAVRVNARSGDNPLTLTIARLATERRQMLAQYRRNSLLISLIAILVCSALSPLV  180
            VQGTELTAVRVNARSGD+PLTLTIA LATERRQML+QYRRNSLLISLIAILVCSALSPLV
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  181  IRNGLRAITSLSRLTAATDSGTLRQPLAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240
            IRN+LRAITSLSRLTAA+DSGTLR P AEQALPVELRPLGQALNTMRQKLSDDFERLNQF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300
            ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKHICFINQCQGTVWADEILLQRVLSNLLTN  360
            HQNIAVKKQPVSLNALVENMLDYLSPLAEEK+ICFINQCQGTVWADEILLQRVLSNLLTN
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSPTADADKLFRRFWRGDNARYTAGFGLGLS  420
            AIRYSDENAVIRIESAYDDNVAEIRVANPGS  ADADKLFRRFWRGDNA  TAGF LGLS
Sbjct  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLS  420

Query  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454
            LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS
Sbjct  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454

36) copS in NC_004631


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  698 bits (2640),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 440/454 (97%), Positives = 446/454 (99%), Gaps = 0/454 (0%)

Query  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60
            MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   RPENLPLYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120
            RPENL+LYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  121  VQGTELTAVRVNARSGDNPLTLTIARLATERRQMLAQYRRNSLLISLIAILVCSALSPLV  180
            VQGTELTAVRVNARSGD+PLTLTIA LATERRQML+QYRRNSLLISLIAILVCSALSPLV
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  181  IRNGLRAITSLSRLTAATDSGTLRQPLAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240
            IRN+LRAITSLSRLTAA+DSGTLR P AEQALPVELRPLGQALNTMRQKLSDDFERLNQF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300
            ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKHICFINQCQGTVWADEILLQRVLSNLLTN  360
            HQNIAVKKQPVSLNALVENMLDYLSPLAEEK+ICFINQCQGTVWADEILLQRVLSNLLTN
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSPTADADKLFRRFWRGDNARYTAGFGLGLS  420
            AIRYSDENAVIRIESAYDDNVAEIRVANPGS  ADADKLFRRFWRGDNA  TAGF LGLS
Sbjct  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLS  420

Query  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454
            LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS
Sbjct  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSGDS  454

37) copS in NC_016831


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  697 bits (2636),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 439/449 (98%), Positives = 443/449 (99%), Gaps = 0/449 (0%)

Query  1    MTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGARPENL  60
            MTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGARPENL
Sbjct  6    MTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGARPENL  65

Query  61   PLYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQAVQGTE  120
            +LYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQAVQGTE
Sbjct  66   ALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQAVQGTE  125

Query  121  LTAVRVNARSGDDPLTLTIARLATERRQMLTQYRRNSLLMSLIAILVCSALSPLVIRNGL  180
            LTAVRVNARSGDDPLTLTIA LATERRQMLTQYRRNSLL+SLIAILVCSALSPLVIRN+L
Sbjct  126  LTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLVIRNAL  185

Query  181  RAITSLSRLTAATDSGTLNQPLAEQALPVELRPLGQALNTMRQKLSDDFERLNQFADDLA  240
            RAITSLSRLTAA+DSGTL  P AEQALPVELRPLGQALNTMRQKLSDDFERLNQFADDLA
Sbjct  186  RAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQFADDLA  245

Query  241  HELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAEHQNIA  300
            HELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAEHQNIA
Sbjct  246  HELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAEHQNIA  305

Query  301  VKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTNAIRYS  360
            VKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTNAIRYS
Sbjct  306  VKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTNAIRYS  365

Query  361  DENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNARHTAGFGLGLSLVNAI  420
            DENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNA HTAGF LGLSLVNAI
Sbjct  366  DENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLSLVNAI  425

Query  421  ALLHGGSASYRYADEHNIFSVRLPDSGDS  449
            ALLHGGSASYRYADEHNIFSVRLPDSGDS
Sbjct  426  ALLHGGSASYRYADEHNIFSVRLPDSGDS  454

38) SN31241_21620 in NC_021902


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  694 bits (2624),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 436/449 (98%), Positives = 442/449 (99%), Gaps = 0/449 (0%)

Query  1    MTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGARPENL  60
            MTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGARPENL
Sbjct  6    MTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGARPENL  65

Query  61   PLYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQAAQGTE  120
            +LYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA QGTE
Sbjct  66   ALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQAVQGTE  125

Query  121  LTAVRVSARSGDDPLTLTIARLATERRQMLAQYRRNSLLMSLIAILVCSALSPLVIRNGL  180
            LTAVRV+ARSGDDPLTLTIA LATERRQML+QYRRNSLL+SLIAILVCSALSPLVIRN+L
Sbjct  126  LTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLVIRNAL  185

Query  181  RAITLLSRLTAATDSGTLRQPLAEQALPVELRPLGQALNTMRQKLSDDFERLNQFADDLA  240
            RAIT LSRLTAA+DSGTLR P AEQALPVELRPLGQALNTMRQKLSDDFERLNQFADDLA
Sbjct  186  RAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQFADDLA  245

Query  241  HELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAEHQNIA  300
            HELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAEHQNIA
Sbjct  246  HELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAEHQNIA  305

Query  301  VKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTNAIRYS  360
            VKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTNAIRYS
Sbjct  306  VKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTNAIRYS  365

Query  361  DENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNARHTAGFGLGLSLVNAI  420
            DENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNA HTAGF LGLSLVNAI
Sbjct  366  DENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLSLVNAI  425

Query  421  ALLHGGSASYRYADEHNIFSVRLPDSGDS  449
            ALLHGGSASYRYADEHNIFSVRLPDSGDS
Sbjct  426  ALLHGGSASYRYADEHNIFSVRLPDSGDS  454

39) SARI_01908 in NC_010067


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  659 bits (2492),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 409/452 (91%), Positives = 432/452 (96%), Gaps = 0/452 (0%)

Query  1    MVKLSMTLRLTISFIAILILACTGISWTLYRALSKELTYRDDMTLINRAAQMQQLLLDGA  60
            MVKLSMTLRLTISFIAILILACTGISWTLY ALSKELTYRDDMTLINRAAQMQQLLLDGA
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   RPENLPLYFNRMVDTKQDILLIHSPTGHSVAINHSGIPNERLNMIPLAKNITRETLFRQT  120
            RPENL+LYFNRMVDTKQDILLIHS+TGH+VAINHSGIP++R+N IPLAKNITRETLFRQ+
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  121  VRGTELTAVRVIGRSGDYPLTLTIARLATERRQMLEQYRHNSLLISLIAIIVCSALSPLV  180
            V+GTELTAVRV +RSGD PLTLTIA LATERRQML QYR+NSLLISLIAI+VCSALSPLV
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  181  IRNGLRAITSLSRLTAATDSGTLRQPLAEQALPVELRPLGQALNIMRQKLSDDFGRLNQF  240
            IRN+LRAITSLSRLTAA+DSGTLR P AEQALPVELRPLGQALN MRQKLSDDF RLNQF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  241  ADDLAHELRTPVNILLGKNQVMLSQERSIEEYQQALVDNIEELEGLSRLTENILFLARVE  300
            ADDLAHELRTPVNILLGKNQVMLSQERS EEYQQALVDNIEELEGLSRLTENILFLAR E
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  301  HQNIAVKKQPVPLNALVENMLDYLSPLAEEKRIRFISQCQGTVWADKILLQRVLSNLLTN  360
            HQNIAVKKQPV+LNALVENMLDYLSPLAEEKRI FI+QCQGTVWAD ILLQRVLSNLLTN
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  361  AIRYSDENAVIRIESAYDNNAAEIRVANPGNPAADPGKLFRRFWRGDNARHTTGFGLGLS  420
            AIRYSDENAVIRIESAYD+N AEIRVANPG+ +AD++KLFRRFWRGDNA HT+GF LGLS
Sbjct  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLS  420

Query  421  LVNAIAMLHGGSASYLYADKHNIFSVRLPDNG  452
            LVNAIA+LHGGSASY YAD HNIFSVRLPD+G
Sbjct  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDSG  452

40) copS in NC_015761


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  612 bits (2312),  Expect = 1e-176, Method: Compositional matrix adjust.
 Identities = 382/451 (85%), Positives = 423/451 (94%), Gaps = 0/451 (0%)

Query  1    MIKLSMTLRLSISFIAILILVCTSISWTLYNALSKELTWRDDLTLINRAAQMQQLLLDGA  60
            M+KLSMTLRL+ISFIAILIL CT+ISWTLYNALSKELT RDD+TLINRAAQMQQLLLDGA
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   RPENLPLYFNRMVDTKQDILLIHSPTDHRVTINHSGIPDERFNAIPVTKKITRDTLFRQR  120
            RPENL+LYFNRMVDTKQDILLIHS+T+H V+INHSGIPD+RFN IP++K+ITR+TLFRQ 
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  121  VQGAELTAVRVNARSGDIPltltlarlaterrQMLEQYRHNSLLISLVAILVFSALSPLV  180
            VQG+ELTAVRVNARSGD PLTLT+A LATERRQML QYR+NSLLISL+AILV SALSPLV
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  181  IRNGLRAITSLSRLTAATDSGTLRQPLAEQTLPAELRPLGKALNIMRQKLSGDFERLNQF  240
            IRN+LRAITSLSRLTAA+DSGTLR P AEQ+LP ELRPLG+ALN MRQKLS+DFERLNQF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  241  ADDLAHELRTPVNILLGKNQVILSQERSTEEYQQALVDNIEELEELSRLTENILFLARAE  300
            ADDLAHELRTPVNILLGKNQV+LSQERS+EEYQQALVDNIEELE LSRLTENILFLARAE
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  301  HQNIVVEKHPIPLNELIENMLDYLSPLAEEKRIRVISECQGTVWADKMLLQRMLSNLLTN  360
            HQNI V K+P++LN L+ENMLDYLSPLAEEKRI  I++CQGTVWAD +LLQR+LSNLLTN
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  361  AIRYSEENAVIRIESAYENAITEIRTANPGSHPADPDKLFRRFWRGDNARHTTGFGLGLS  420
            AIRYS+ENAVIRIESAY++ ++EIR ANPGSHPAD+DKLFRRFWRGDNA HT+GF LGLS
Sbjct  361  AIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLS  420

Query  421  LVNAIATLHGGSVSYRYADEHHLFSVYLPAS  451
            LVNAIA LHGGS SYRYADEH++FSV LP S
Sbjct  421  LVNAIALLHGGSASYRYADEHNIFSVRLPDS  451

41) A464_1034 in NC_021870


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  603 bits (2278),  Expect = 5e-174, Method: Compositional matrix adjust.
 Identities = 378/446 (85%), Positives = 417/446 (94%), Gaps = 0/446 (0%)

Query  1    MTLRLSISFIAILILVCTSISWTLYNALSKELTWRDDLTLINRAAQMQQLLLDGARPENL  60
            MTLRL+ISFIAILIL CT+ISWTLYNALSKELT RDD+TLINRAAQMQQLLLDGARPENL
Sbjct  6    MTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGARPENL  65

Query  61   PLYFNRMVDTKQDILLIHSPTDHRVTINHSGIPDERFNAIPVTKKITRDTLFRQRVQGAE  120
            +LYFNRMVDTKQDILLIHS+T+H V+INHSGIPD+RFN IP++K+ITR+TLFRQ VQG+E
Sbjct  66   ALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQAVQGTE  125

Query  121  LTAVRVNARSGDIPltltlarlaterrQMLEQYRHNSLLISLIAILVFSALSPLVIRNGL  180
            LTAVRVNARSGD PLTLT+A LATERRQML QYR+NSLLISLIAILV SALSPLVIRN+L
Sbjct  126  LTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLVIRNAL  185

Query  181  RAITSLSRLTAATDSGTLRQPLAEQTLPAELRPLGKALNIMRQKLSGDFERLNQFADDLA  240
            RAITSLSRLTAA+DSGTLR P AEQ+LP ELRPLG+ALN MRQKLS+DFERLNQFADDLA
Sbjct  186  RAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQFADDLA  245

Query  241  HELRTPVNILLGKNQVILSQERSTEEYQQALVDNIEELEELSRLTENILFLARAEHQNIV  300
            HELRTPVNILLGKNQV+LSQERS+EEYQQALVDNIEELE LSRLTENILFLARAEHQNI 
Sbjct  246  HELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAEHQNIA  305

Query  301  VEKHPIPLNELIENMLDYLSPLAEEKRIRVISECQGTVWADKMLLQRMLSNLLTNAIRYS  360
            V K+P++LN L+ENMLDYLSPLAEEKRI  I++CQGTVWAD +LLQR+LSNLLTNAIRYS
Sbjct  306  VKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTNAIRYS  365

Query  361  EENAVIRIESVYENAITEIRTANPGSHPADPDKLFRRFWRGDNARHTTGFGLGLSLVNAI  420
            +ENAVIRIES Y++ ++EIR ANPGSHPAD+DKLFRRFWRGDNA HT+GF LGLSLVNAI
Sbjct  366  DENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLSLVNAI  425

Query  421  ATLHGGSVSYRYADEHHLFSVYLPAS  446
            A LHGGS SYRYADEH++FSV LP S
Sbjct  426  ALLHGGSASYRYADEHNIFSVRLPDS  451

42) ROD_50431 in NC_013716


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  399 bits (1502),  Expect = 1e-112, Method: Compositional matrix adjust.
 Identities = 259/430 (61%), Positives = 350/430 (82%), Gaps = 0/430 (0%)

Query  21   ACSGVSWTLYRALSQELTWRDDIMLINRAEQIRQLLRDGAKAENLPLYFNRMMDTRQDIL  80
            AC+G+SWTLY ALS+ELT RDD+ LINRA Q++QLL DGA++ENL+LYFNRM+DT+QDIL
Sbjct  21   ACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGARPENLALYFNRMVDTKQDIL  80

Query  81   LIHSPAASHIVVNHTGVQSALLDALPAQTTPTLQSIAKRDVAGTPLAAVRITANSDAQPV  140
            LIHS+++ ++ +NH+G+    ++ +P     T +++ ++ V GT L+AVR+ A S+ +P+
Sbjct  81   LIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQAVQGTELTAVRVNARSGDDPL  140

Query  141  TITVARLATERRLMLEQYRNNsilisaiaillcsalsPFLIRKGLKAIKTLSRVTASIDS  200
            T+T+A LATERR ML QYR NS+LIS IAIL+CSALSP++IR++L+AI +LSR+TA+ DS
Sbjct  141  TLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLVIRNALRAITSLSRLTAASDS  200

Query  201  RGLSQPLDENALPVELKPLGSALNVMRQKLADDFTRLNQFADDLAHELRTPVNILLGHNQ  260
              L  P  E+ALPVEL+PLG ALN MRQKL+DDF RLNQFADDLAHELRTPVNILLG NQ
Sbjct  201  GTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQFADDLAHELRTPVNILLGKNQ  260

Query  261  VALSKARTTEEYQQTLANNIEELEGLSRLTENILFLARAEHHNILLKKEAIPFAEPIADL  320
            V LS+ R++EEYQQ+L +NIEELEGLSRLTENILFLARAEH+NI +KK+++++   + ++
Sbjct  261  VMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAEHQNIAVKKQPVSLNALVENM  320

Query  321  TDFLEYAAEEKDIAFRVAGEAVIQADrvllqrvllnllTNAIRYSPEQAVITINAARSGN  380
             D+L   AEEK I F    ++ + AD +LLQRVL NLLTNAIRYS E+AVI I++A  +N
Sbjct  321  LDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTNAIRYSDENAVIRIESAYDDN  380

Query  381  ETIVEIANPGTEAENADKLFNRFWRGDNARHSSGYGLGLSMVKAIMTLHSGAVSYRFADG  440
             + + +ANPG+++ +ADKLF RFWRGDNA H++G+ LGLS+V+AI  LH+G+ SYR+AD 
Sbjct  381  VAEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLSLVNAIALLHGGSASYRYADE  440

Query  441  QHIFTLRFPA  450
            ++IF++R+P 
Sbjct  441  HNIFSVRLPD  450

43) yedV in NC_017328


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  390 bits (1465),  Expect = 1e-109, Method: Compositional matrix adjust.
 Identities = 243/451 (54%), Positives = 344/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRLTLLFIFLQSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +  +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHSDGINKI-VNRTNVSDDMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IHS   +++ +N++ ++D+ +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaiilcsvlSPLL  179
            +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSRVPVEVNALPRELKPLGQALNKMHHALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P   +ALP EL+PLGQALN M++ L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQIRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFKVKCNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK ICF  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIHITSFLDANGSLNIDIASPGTKINEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N + +I +A+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNVA-EIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLSKHNVFRITLPQ  450
            SLV+AIA LHGGSA+Y+Y   HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

44) yedV in NC_004337


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  390 bits (1465),  Expect = 1e-109, Method: Compositional matrix adjust.
 Identities = 243/451 (54%), Positives = 344/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRLTLLFIFLQSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +  +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHSDGINKI-VNRTNVSDDMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IHS   +++ +N++ ++D+ +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaiilcsvlSPLL  179
            +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSRVPVEVNALPRELKPLGQALNKMHHALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P   +ALP EL+PLGQALN M++ L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQIRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFKVKCNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK ICF  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIHITSFLDANGSLNIDIASPGTKINEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N + +I +A+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNVA-EIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLSKHNVFRITLPQ  450
            SLV+AIA LHGGSA+Y+Y   HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

45) yedV in NC_011751


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  390 bits (1466),  Expect = 9e-110, Method: Compositional matrix adjust.
 Identities = 243/451 (54%), Positives = 344/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRLTLLFILVLSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDSINKI-VNRTNVSDDMLNNIPATETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+ + +++ +N++ ++D+ +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaiilcsvlSPLL  179
            +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDNREPVEVSALPRELKPLGQALNKMHQALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P    ALP EL+PLGQALN M+Q L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFKVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK ICF  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRILITSFLDTNGSLNIDIASPGTKINEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I I S  D N + +I +A+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNVA-EIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLNKLNVFRITLPQ  450
            SLV+AIA LHGGSA+Y+Y +  N+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

46) yedV in NC_004741


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  388 bits (1461),  Expect = 2e-109, Method: Compositional matrix adjust.
 Identities = 242/451 (54%), Positives = 344/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRLTLLFIFLQSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +  +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHSDGINKI-VNRTNVSDDMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IHS   +++ +N++ ++D+ +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaiilcsvlSPLL  179
            +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGVREIKKLSGVTEALNYNDSRVPVEVNALPRELKPLGQALNKMHHALVKDFERLSQF  239
            IR ++R I  LS +T A +    R P   +ALP EL+PLGQALN M++ L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQIRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFKVKCNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK ICF  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIHITSFLDANGSLNIDIASPGTKINEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N + +I +A+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNVA-EIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLSKHNVFRITLPQ  450
            SLV+AIA LHGGSA+Y+Y   HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

47) yedV in NC_011993


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  387 bits (1454),  Expect = 7e-109, Method: Compositional matrix adjust.
 Identities = 241/451 (54%), Positives = 343/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRLTLLFIFLLSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDGINKI-VNRTNVSDDMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+   +++ +N++ ++D+ +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDAFRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaiilcsvlSPLL  179
            +++TE+ A R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSRVPVEVNALPRELKPLGQALNKMHHALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P   +ALP EL+PLGQALN M++ L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDALSLNKEVENLMDYLEYLSDEKEIRFKVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN++DYL  L++EK I F  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIHITSFLDANGSLNIDIASPGTKINEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N + +I +A+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNVA-EIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLSKHNVFRITLPQ  450
            SLV+AIA LHGGSA+Y+Y   HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

48) NRG857_09825 in NC_017634


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  387 bits (1454),  Expect = 7e-109, Method: Compositional matrix adjust.
 Identities = 241/451 (54%), Positives = 343/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRLTLLFIFLLSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDGINKI-VNRTNVSDDMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+   +++ +N++ ++D+ +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDAFRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaiilcsvlSPLL  179
            +++TE+ A R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSRVPVEVNALPRELKPLGQALNKMHHALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P   +ALP EL+PLGQALN M++ L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDALSLNKEVENLMDYLEYLSDEKEIRFKVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN++DYL  L++EK I F  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIHITSFLDANGSLNIDIASPGTKINEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N + +I +A+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNVA-EIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLSKHNVFRITLPQ  450
            SLV+AIA LHGGSA+Y+Y   HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

49) ECP_1901 in NC_008253


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  387 bits (1454),  Expect = 8e-109, Method: Compositional matrix adjust.
 Identities = 242/451 (54%), Positives = 342/451 (76%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRLTLLFIFLLSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDGINKI-VNRTNVSDDMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+   +++ +N++ ++D+ +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDAFRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaiilcsvlSPLL  179
            +++TE+ A R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSRVPVEVSALPRELKPLGQALNKMHHALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P    ALP EL+PLGQALN M++ L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDALSLNKEVENLLDYLEYLSDEKEIRFKVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK I F  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIHITSFLDANGSLNIDIASPGTKINEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N + +I +A+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNVA-EIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLSKHNVFRITLPQ  450
            SLV+AIA LHGGSA+Y+Y   HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

50) yedV in NC_008258


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  386 bits (1451),  Expect = 1e-108, Method: Compositional matrix adjust.
 Identities = 242/451 (54%), Positives = 343/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRLTLLFIFLQSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +  +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHSDGINKI-VNRTNVSDDMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IHS   +++ +N++ ++D+ +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaiilcsvlSPLL  179
            +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSRVPVEVNALPRELKPLGQALNKMHHALVKYFERLSQF  239
            IR +LR I  LS +T A +    R P   +ALP EL+PLGQALN M++ L   FERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQIRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFKVKCNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK ICF  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIHITSFLDANGSLNIDIASPGTKINEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N + +I +A+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNVA-EIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLSKHNVFRITLPQ  450
            SLV+AIA LHGGSA+Y+Y   HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

51) yedV in NC_012971


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  382 bits (1435),  Expect = 3e-107, Method: Compositional matrix adjust.
 Identities = 244/451 (55%), Positives = 344/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRltllfilllSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDGINKI-VNRTNVSDDMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+   +++ +N++ ++D+ +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaivlcsvlSPLL  179
            +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSREPVEVSALPRELKPLGQALNKMHQALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P    ALP EL+PLGQALN M+Q L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFKVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK ICF  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIHITSFLDTNSYLNIDIASPGTKINEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N   +I +A+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNV-AEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLNKHNVFRITLPQ  450
            SLV+AIA LHGGSA+Y+Y + HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

52) yedV in NC_012892


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  382 bits (1435),  Expect = 3e-107, Method: Compositional matrix adjust.
 Identities = 244/451 (55%), Positives = 344/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRltllfilllSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDGINKI-VNRTNVSDDMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+   +++ +N++ ++D+ +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaivlcsvlSPLL  179
            +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSREPVEVSALPRELKPLGQALNKMHQALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P    ALP EL+PLGQALN M+Q L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFKVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK ICF  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIHITSFLDTNSYLNIDIASPGTKINEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N   +I +A+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNV-AEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLNKHNVFRITLPQ  450
            SLV+AIA LHGGSA+Y+Y + HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

53) yedV in NC_012967


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  382 bits (1435),  Expect = 3e-107, Method: Compositional matrix adjust.
 Identities = 244/451 (55%), Positives = 344/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRltllfilllSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDGINKI-VNRTNVSDDMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+   +++ +N++ ++D+ +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaivlcsvlSPLL  179
            +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSREPVEVSALPRELKPLGQALNKMHQALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P    ALP EL+PLGQALN M+Q L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFKVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK ICF  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIHITSFLDTNSYLNIDIASPGTKINEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N   +I +A+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNV-AEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLNKHNVFRITLPQ  450
            SLV+AIA LHGGSA+Y+Y + HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

54) APECO78_13620 in NC_020163


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  381 bits (1433),  Expect = 3e-107, Method: Compositional matrix adjust.
 Identities = 245/451 (55%), Positives = 345/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRltllfilllSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDSINKI-VNRTNVSDDMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+ + +++ +N++ ++D+ +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaivlcsvlSPLL  179
            +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSREPVEVSALPRELKPLGQALNKMHQALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P    ALP EL+PLGQALN M+Q L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFKVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK ICF  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIHITSFLDTNGYLNIDVASPGTKIHEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N   +I VA+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNV-AEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLNKHNVFRIMLPQ  450
            SLV+AIA LHGGSA+Y+Y + HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

55) EcE24377A_2199 in NC_009801


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  381 bits (1433),  Expect = 3e-107, Method: Compositional matrix adjust.
 Identities = 245/451 (55%), Positives = 345/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRltllfilllSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDSINKI-VNRTNVSDDMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+ + +++ +N++ ++D+ +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaivlcsvlSPLL  179
            +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSREPVEVSALPRELKPLGQALNKMHQALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P    ALP EL+PLGQALN M+Q L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFKVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK ICF  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIHITSFLDTNGYLNIDVASPGTKIHEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N   +I VA+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNV-AEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLNKHNVFRIMLPQ  450
            SLV+AIA LHGGSA+Y+Y + HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

56) yedV in NC_013353


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  381 bits (1434),  Expect = 3e-107, Method: Compositional matrix adjust.
 Identities = 245/451 (55%), Positives = 345/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRltllfilllSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDSINKI-VNRTNVSDDMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+ + +++ +N++ ++D+ +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEVDALRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaivlcsvlSPLL  179
            +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSREPVEVSALPRELKPLGQALNKMHQALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P    ALP EL+PLGQALN M+Q L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFKVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK ICF  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSHIHITSFLDTNGYLNIDVASPGTKIHEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N   +I VA+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNV-AEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLNKHNVFRITLPQ  450
            SLV+AIA LHGGSA+Y+Y + HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

57) ECSE_2197 in NC_011415


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  381 bits (1433),  Expect = 3e-107, Method: Compositional matrix adjust.
 Identities = 245/451 (55%), Positives = 345/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRltllfilllSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDSINKI-VNRTNVSDDMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+ + +++ +N++ ++D+ +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaivlcsvlSPLL  179
            +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSREPVEVSALPRELKPLGQALNKMHQALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P    ALP EL+PLGQALN M+Q L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFKVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK ICF  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIHITSFLDTNGYLNIDVASPGTKIHEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N   +I VA+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNV-AEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLNKHNVFRIMLPQ  450
            SLV+AIA LHGGSA+Y+Y + HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

58) yedV in NC_017660


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  381 bits (1433),  Expect = 4e-107, Method: Compositional matrix adjust.
 Identities = 245/451 (55%), Positives = 345/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRltllfilllSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDSINKI-VNRTNVSDDMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+ + +++ +N++ ++D+ +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaivlcsvlSPLL  179
            +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSREPVEVSALPRELKPLGQALNKMHQALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P    ALP EL+PLGQALN M+Q L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFKVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK ICF  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIHITSFLDTNGYLNIDVASPGTKIHEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N   +I VA+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNV-AEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLNKHNVFRITLPQ  450
            SLV+AIA LHGGSA+Y+Y + HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

59) EKO11_1808 in NC_016902


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  381 bits (1433),  Expect = 4e-107, Method: Compositional matrix adjust.
 Identities = 245/451 (55%), Positives = 345/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRltllfilllSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDSINKI-VNRTNVSDDMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+ + +++ +N++ ++D+ +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaivlcsvlSPLL  179
            +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSREPVEVSALPRELKPLGQALNKMHQALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P    ALP EL+PLGQALN M+Q L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFKVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK ICF  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIHITSFLDTNGYLNIDVASPGTKIHEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N   +I VA+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNV-AEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLNKHNVFRITLPQ  450
            SLV+AIA LHGGSA+Y+Y + HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

60) LY180_10190 in NC_022364


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  381 bits (1433),  Expect = 4e-107, Method: Compositional matrix adjust.
 Identities = 245/451 (55%), Positives = 345/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRltllfilllSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDSINKI-VNRTNVSDDMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+ + +++ +N++ ++D+ +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaivlcsvlSPLL  179
            +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSREPVEVSALPRELKPLGQALNKMHQALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P    ALP EL+PLGQALN M+Q L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFKVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK ICF  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIHITSFLDTNGYLNIDVASPGTKIHEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N   +I VA+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNV-AEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLNKHNVFRITLPQ  450
            SLV+AIA LHGGSA+Y+Y + HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

61) EcSMS35_1217 in NC_010498


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  381 bits (1432),  Expect = 4e-107, Method: Compositional matrix adjust.
 Identities = 245/451 (55%), Positives = 344/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRltllfilllSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDGINKI-VNRTNVSDDMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+   +++ +N++ ++D+ +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaivlcsvlSPLL  179
            +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSREPVEVSALPRELKPLGQALNKMHQALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P    ALP EL+PLGQALN M+Q L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFKVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK ICF  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSHIHITSFLDTNGYLNIDVASPGTKIHEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N   +I VA+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNV-AEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLNKHNVFRITLPQ  450
            SLV+AIA LHGGSA+Y+Y + HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

62) yedV in NC_017635


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  381 bits (1433),  Expect = 4e-107, Method: Compositional matrix adjust.
 Identities = 245/451 (55%), Positives = 345/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRltllfilllSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDSINKI-VNRTNVSDDMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+ + +++ +N++ ++D+ +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaivlcsvlSPLL  179
            +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSREPVEVSALPRELKPLGQALNKMHQALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P    ALP EL+PLGQALN M+Q L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFKVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK ICF  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIHITSFLDTNGYLNIDVASPGTKIHEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N   +I VA+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNV-AEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLNKHNVFRITLPQ  450
            SLV+AIA LHGGSA+Y+Y + HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

63) yedV in NC_017664


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  381 bits (1433),  Expect = 4e-107, Method: Compositional matrix adjust.
 Identities = 245/451 (55%), Positives = 345/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRltllfilllSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDSINKI-VNRTNVSDDMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+ + +++ +N++ ++D+ +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaivlcsvlSPLL  179
            +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSREPVEVSALPRELKPLGQALNKMHQALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P    ALP EL+PLGQALN M+Q L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFKVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK ICF  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIHITSFLDTNGYLNIDVASPGTKIHEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N   +I VA+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNV-AEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLNKHNVFRITLPQ  450
            SLV+AIA LHGGSA+Y+Y + HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

64) yedV in NC_011748


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  381 bits (1432),  Expect = 4e-107, Method: Compositional matrix adjust.
 Identities = 243/451 (54%), Positives = 344/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRltllfilllSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDSINKI-VNRTNVSDGMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+ + +++ +N++ ++D  +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaiilcsvlSPLL  179
            +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSREPVEVSALPRELKPLGQALNKMHHALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P    ALP EL+PLGQALN M++ L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFNVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK ICF  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIHITSFLDTNSYLNIDIASPGTKINEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N   +I +A+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNV-AEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLNKHNVFRITLPQ  450
            SLV+AIA LHGGSA+Y+Y + HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

65) ECBD_1679 in NC_012947


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  381 bits (1432),  Expect = 4e-107, Method: Compositional matrix adjust.
 Identities = 243/451 (54%), Positives = 344/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRltllfilllSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDSINKI-VNRTNVSDGMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+ + +++ +N++ ++D  +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaivlcsvlSPLL  179
            +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSREPVEVSALPRELKPLGQALNKMHHALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P    ALP EL+PLGQALN M++ L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFKVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK ICF  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIHITSFLDTNSYLNIDIASPGTKINEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N   +I +A+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNV-AEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLNKHNVFRITLPQ  450
            SLV+AIA LHGGSA+Y+Y + HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

66) yedV in NC_012759


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  381 bits (1432),  Expect = 4e-107, Method: Compositional matrix adjust.
 Identities = 243/451 (54%), Positives = 344/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRltllfilllSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDSINKI-VNRTNVSDGMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+ + +++ +N++ ++D  +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaivlcsvlSPLL  179
            +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSREPVEVSALPRELKPLGQALNKMHHALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P    ALP EL+PLGQALN M++ L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFKVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK ICF  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIHITSFLDTNSYLNIDIASPGTKINEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N   +I +A+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNV-AEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLNKHNVFRITLPQ  450
            SLV+AIA LHGGSA+Y+Y + HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

67) EcDH1_1683 in NC_017625


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  381 bits (1432),  Expect = 4e-107, Method: Compositional matrix adjust.
 Identities = 243/451 (54%), Positives = 344/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRltllfilllSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDSINKI-VNRTNVSDGMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+ + +++ +N++ ++D  +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaivlcsvlSPLL  179
            +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSREPVEVSALPRELKPLGQALNKMHHALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P    ALP EL+PLGQALN M++ L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFKVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK ICF  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIHITSFLDTNSYLNIDIASPGTKINEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N   +I +A+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNV-AEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLNKHNVFRITLPQ  450
            SLV+AIA LHGGSA+Y+Y + HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

68) yedV in NC_017638


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  381 bits (1432),  Expect = 4e-107, Method: Compositional matrix adjust.
 Identities = 243/451 (54%), Positives = 344/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRltllfilllSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDSINKI-VNRTNVSDGMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+ + +++ +N++ ++D  +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaivlcsvlSPLL  179
            +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSREPVEVSALPRELKPLGQALNKMHHALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P    ALP EL+PLGQALN M++ L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFKVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK ICF  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIHITSFLDTNSYLNIDIASPGTKINEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N   +I +A+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNV-AEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLNKHNVFRITLPQ  450
            SLV+AIA LHGGSA+Y+Y + HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

69) yedV in NC_010473


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  381 bits (1432),  Expect = 4e-107, Method: Compositional matrix adjust.
 Identities = 243/451 (54%), Positives = 344/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRltllfilllSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDSINKI-VNRTNVSDGMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+ + +++ +N++ ++D  +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaivlcsvlSPLL  179
            +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSREPVEVSALPRELKPLGQALNKMHHALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P    ALP EL+PLGQALN M++ L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFKVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK ICF  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIHITSFLDTNSYLNIDIASPGTKINEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N   +I +A+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNV-AEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLNKHNVFRITLPQ  450
            SLV+AIA LHGGSA+Y+Y + HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

70) yedV in NC_020518


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  381 bits (1432),  Expect = 4e-107, Method: Compositional matrix adjust.
 Identities = 243/451 (54%), Positives = 344/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRltllfilllSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDSINKI-VNRTNVSDGMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+ + +++ +N++ ++D  +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaivlcsvlSPLL  179
            +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSREPVEVSALPRELKPLGQALNKMHHALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P    ALP EL+PLGQALN M++ L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFKVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK ICF  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIHITSFLDTNSYLNIDIASPGTKINEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N   +I +A+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNV-AEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLNKHNVFRITLPQ  450
            SLV+AIA LHGGSA+Y+Y + HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

71) yedV in NC_000913


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  381 bits (1432),  Expect = 4e-107, Method: Compositional matrix adjust.
 Identities = 243/451 (54%), Positives = 344/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRltllfilllSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDSINKI-VNRTNVSDGMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+ + +++ +N++ ++D  +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaivlcsvlSPLL  179
            +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSREPVEVSALPRELKPLGQALNKMHHALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P    ALP EL+PLGQALN M++ L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFKVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK ICF  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIHITSFLDTNSYLNIDIASPGTKINEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N   +I +A+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNV-AEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLNKHNVFRITLPQ  450
            SLV+AIA LHGGSA+Y+Y + HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

72) yedV in NC_007779


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  381 bits (1432),  Expect = 4e-107, Method: Compositional matrix adjust.
 Identities = 243/451 (54%), Positives = 344/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRltllfilllSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDSINKI-VNRTNVSDGMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+ + +++ +N++ ++D  +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaivlcsvlSPLL  179
            +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSREPVEVSALPRELKPLGQALNKMHHALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P    ALP EL+PLGQALN M++ L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFKVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK ICF  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIHITSFLDTNSYLNIDIASPGTKINEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N   +I +A+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNV-AEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLNKHNVFRITLPQ  450
            SLV+AIA LHGGSA+Y+Y + HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

73) O3M_09735 in NC_018650


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  381 bits (1432),  Expect = 4e-107, Method: Compositional matrix adjust.
 Identities = 243/451 (54%), Positives = 344/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRltllfilllSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDSINKI-VNRTNVSDGMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+ + +++ +N++ ++D  +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaiilcsvlSPLL  179
            +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSREPVEVSALPRELKPLGQALNKMHHALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P    ALP EL+PLGQALN M++ L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFNVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK ICF  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIHITSFLDTNSYLNIDIASPGTKINEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N   +I +A+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNV-AEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLNKHNVFRITLPQ  450
            SLV+AIA LHGGSA+Y+Y + HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

74) O3O_15855 in NC_018661


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  381 bits (1432),  Expect = 4e-107, Method: Compositional matrix adjust.
 Identities = 243/451 (54%), Positives = 344/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRltllfilllSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDSINKI-VNRTNVSDGMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+ + +++ +N++ ++D  +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaiilcsvlSPLL  179
            +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSREPVEVSALPRELKPLGQALNKMHHALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P    ALP EL+PLGQALN M++ L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFNVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK ICF  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIHITSFLDTNSYLNIDIASPGTKINEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N   +I +A+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNV-AEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLNKHNVFRITLPQ  450
            SLV+AIA LHGGSA+Y+Y + HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

75) O3K_09770 in NC_018658


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  381 bits (1432),  Expect = 4e-107, Method: Compositional matrix adjust.
 Identities = 243/451 (54%), Positives = 344/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRltllfilllSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDSINKI-VNRTNVSDGMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+ + +++ +N++ ++D  +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaiilcsvlSPLL  179
            +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSREPVEVSALPRELKPLGQALNKMHHALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P    ALP EL+PLGQALN M++ L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFNVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK ICF  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIHITSFLDTNSYLNIDIASPGTKINEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N   +I +A+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNV-AEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLNKHNVFRITLPQ  450
            SLV+AIA LHGGSA+Y+Y + HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

76) yedV in NC_017663


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  381 bits (1432),  Expect = 4e-107, Method: Compositional matrix adjust.
 Identities = 243/451 (54%), Positives = 344/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRltllfilllSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDSINKI-VNRTNVSDGMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+ + +++ +N++ ++D  +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaiilcsvlSPLL  179
            +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSREPVEVSALPRELKPLGQALNKMHHALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P    ALP EL+PLGQALN M++ L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFNVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK ICF  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIHITSFLDTNSYLNIDIASPGTKINEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N   +I +A+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNV-AEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLNKHNVFRITLPQ  450
            SLV+AIA LHGGSA+Y+Y + HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

77) UMNK88_2445 in NC_017641


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  381 bits (1432),  Expect = 4e-107, Method: Compositional matrix adjust.
 Identities = 243/451 (54%), Positives = 344/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRltllfilllSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDSINKI-VNRTNVSDGMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+ + +++ +N++ ++D  +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaiilcsvlSPLL  179
            +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSREPVEVSALPRELKPLGQALNKMHHALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P    ALP EL+PLGQALN M++ L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFNVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK ICF  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIHITSFLDTNSYLNIDIASPGTKINEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N   +I +A+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNV-AEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLNKHNVFRITLPQ  450
            SLV+AIA LHGGSA+Y+Y + HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

78) EcHS_A2069 in NC_009800


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  381 bits (1431),  Expect = 5e-107, Method: Compositional matrix adjust.
 Identities = 245/451 (55%), Positives = 344/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRltllfilllSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDGINKI-VNRTNVSDDMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+   +++ +N++ ++D+ +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaivlcsvlSPLL  179
            +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSREPVEVSALPRELKPLGQALNKMHQALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P    ALP EL+PLGQALN M+Q L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFKVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK ICF  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIHITSFLDTNGYLNIDVASPGTKIHEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N   +I VA+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNV-AEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLNKHNVFRIMLPQ  450
            SLV+AIA LHGGSA+Y+Y + HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

79) yedV in NC_011741


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  381 bits (1431),  Expect = 5e-107, Method: Compositional matrix adjust.
 Identities = 245/451 (55%), Positives = 344/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRltllfilllSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDGINKI-VNRTNVSDDMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+   +++ +N++ ++D+ +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaivlcsvlSPLL  179
            +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSREPVEVSALPRELKPLGQALNKMHQALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P    ALP EL+PLGQALN M+Q L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFKVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK ICF  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIHITSFLDTNGYLNIDVASPGTKIHEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N   +I VA+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNV-AEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLNKHNVFRIMLPQ  450
            SLV+AIA LHGGSA+Y+Y + HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

80) EcolC_1677 in NC_010468


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  381 bits (1431),  Expect = 5e-107, Method: Compositional matrix adjust.
 Identities = 243/451 (54%), Positives = 345/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRltllfilllSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDSINKI-VNRTNVSDDMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+ + +++ +N++ ++D+ +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaivlcsvlSPLL  179
            +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSREPVEVSALPRELKPLGQALNKMHHALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P    ALP EL+PLGQALN M++ L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFKVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK ICF  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIHITSFLDTNGYLNIDIASPGTKINEPEKLFRRFWRGDNSRHSEGQGLGL  419
            AIRYS E++ I+I S  D N   +I +A+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNV-AEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYFNKHNVFRITLPQ  450
            SLV+AIA LHGGSA+Y+Y + HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

81) yedV in NC_011601


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  381 bits (1431),  Expect = 5e-107, Method: Compositional matrix adjust.
 Identities = 243/451 (54%), Positives = 343/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRltllfilllSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGHGINKI-VNRTNVSDGMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+   +++ +N++ ++D  +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaivlcsvlSPLL  179
            +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDNREPVEVSALPRELKPLGQALNKMHHALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P    ALP EL+PLGQALN M++ L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFKVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK ICF  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIQITSFLDANGSLNIDIASPGTKINEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N + +I +A+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNVA-EIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLSKHNVFRITLPQ  450
            SLV+AIA LHGGSA+Y+Y   HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

82) ECH74115_2747 in NC_011353


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  381 bits (1431),  Expect = 5e-107, Method: Compositional matrix adjust.
 Identities = 243/451 (54%), Positives = 344/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRltllfilllSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDGINKI-VNRTNVSDDMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+   +++ +N++ ++D+ +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaiilcsvlSPLL  179
            +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSREPVEVSALPRELKPLGQALNKMHHALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P    ALP EL+PLGQALN M++ L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFKVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK ICF  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIHITSFLDTNSYLNIDIASPGAKINEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N   +I +A+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNV-AEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLNKHNVFRITLPQ  450
            SLV+AIA LHGGSA+Y+Y + HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

83) ECs2706 in NC_002695


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  381 bits (1431),  Expect = 5e-107, Method: Compositional matrix adjust.
 Identities = 243/451 (54%), Positives = 344/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRltllfilllSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDGINKI-VNRTNVSDDMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+   +++ +N++ ++D+ +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaiilcsvlSPLL  179
            +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSREPVEVSALPRELKPLGQALNKMHHALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P    ALP EL+PLGQALN M++ L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFKVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK ICF  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIHITSFLDTNSYLNIDIASPGAKINEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N   +I +A+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNV-AEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLNKHNVFRITLPQ  450
            SLV+AIA LHGGSA+Y+Y + HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

84) yedV in NC_013008


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  381 bits (1431),  Expect = 5e-107, Method: Compositional matrix adjust.
 Identities = 243/451 (54%), Positives = 344/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRltllfilllSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDGINKI-VNRTNVSDDMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+   +++ +N++ ++D+ +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaiilcsvlSPLL  179
            +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSREPVEVSALPRELKPLGQALNKMHHALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P    ALP EL+PLGQALN M++ L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFKVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK ICF  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIHITSFLDTNSYLNIDIASPGAKINEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N   +I +A+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNV-AEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLNKHNVFRITLPQ  450
            SLV+AIA LHGGSA+Y+Y + HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

85) yedV in NC_013941


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  381 bits (1431),  Expect = 5e-107, Method: Compositional matrix adjust.
 Identities = 243/451 (54%), Positives = 344/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRltllfilllSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDGINKI-VNRTNVSDDMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+   +++ +N++ ++D+ +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaiilcsvlSPLL  179
            +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSREPVEVSALPRELKPLGQALNKMHHALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P    ALP EL+PLGQALN M++ L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFKVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK ICF  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIHITSFLDTNSYLNIDIASPGTKINEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N   +I +A+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNV-AEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLNKHNVFRITLPQ  450
            SLV+AIA LHGGSA+Y+Y + HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

86) ECO55CA74_11630 in NC_017656


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  381 bits (1431),  Expect = 5e-107, Method: Compositional matrix adjust.
 Identities = 243/451 (54%), Positives = 344/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRltllfilllSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDGINKI-VNRTNVSDDMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+   +++ +N++ ++D+ +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaiilcsvlSPLL  179
            +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSREPVEVSALPRELKPLGQALNKMHHALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P    ALP EL+PLGQALN M++ L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFKVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK ICF  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIHITSFLDTNSYLNIDIASPGTKINEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N   +I +A+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNV-AEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLNKHNVFRITLPQ  450
            SLV+AIA LHGGSA+Y+Y + HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

87) ECSF_1817 in NC_013654


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  381 bits (1432),  Expect = 5e-107, Method: Compositional matrix adjust.
 Identities = 243/451 (54%), Positives = 344/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRltllfilllSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDGINKI-VNRTNVSDDMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+   +++ +N++ ++D+ +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDAFRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaiilcsvlSPLL  179
            +++TE+ A R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSRVPVEVNALPRELKPLGQALNKMHHALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P   +ALP EL+PLGQALN M++ L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFKVKCNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK ICF  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIHITSFLDANGSLNIDIASPGTKINEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N + +I +A+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNVA-EIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLSKHNVFRITLPQ  450
            SLV+AIA LHGGSA+Y+Y   HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

88) CDCO157_2500 in NC_017906


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  381 bits (1431),  Expect = 5e-107, Method: Compositional matrix adjust.
 Identities = 243/451 (54%), Positives = 344/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRltllfilllSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDGINKI-VNRTNVSDDMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+   +++ +N++ ++D+ +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaiilcsvlSPLL  179
            +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSREPVEVSALPRELKPLGQALNKMHHALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P    ALP EL+PLGQALN M++ L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFKVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK ICF  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIHITSFLDTNSYLNIDIASPGAKINEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N   +I +A+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNV-AEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLNKHNVFRITLPQ  450
            SLV+AIA LHGGSA+Y+Y + HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

89) SSON53_11990 in NC_016822


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  380 bits (1428),  Expect = 8e-107, Method: Compositional matrix adjust.
 Identities = 244/451 (55%), Positives = 344/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRltllfilllSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDGINKI-VNRTNVSDDMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+   +++ +N++ ++D+ +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaivlcsvlSPLL  179
            +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSREPVEVSALPRELKPLGQALNKMHHALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P    ALP EL+PLGQALN M++ L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFKVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK ICF  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIHITSFLDTNGYLNIDVASPGTKIHEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N   +I VA+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNV-AEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLNKHNVFRIMLPQ  450
            SLV+AIA LHGGSA+Y+Y + HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

90) yedV in NC_007384


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  380 bits (1428),  Expect = 8e-107, Method: Compositional matrix adjust.
 Identities = 244/451 (55%), Positives = 344/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRltllfilllSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDGINKI-VNRTNVSDDMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+   +++ +N++ ++D+ +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaivlcsvlSPLL  179
            +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSREPVEVSALPRELKPLGQALNKMHHALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P    ALP EL+PLGQALN M++ L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFKVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK ICF  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIHITSFLDTNGYLNIDVASPGTKIHEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N   +I VA+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNV-AEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLNKHNVFRIMLPQ  450
            SLV+AIA LHGGSA+Y+Y + HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

91) yedV in NC_011745


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  379 bits (1423),  Expect = 2e-106, Method: Compositional matrix adjust.
 Identities = 244/451 (55%), Positives = 343/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRltllfilllSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDSINKI-VNRTNVSDGMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+ + +++ +N++ ++D  +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaiilcsvlSPLL  179
            +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSREPVEVSALPRELKPLGQALNKMHHALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P    ALP EL+PLGQALN M++ L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFKVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK ICF  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIEITSFLDTNGYLNIDVASPGTKIHEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I I S  D N   +I VA+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNV-AEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLNKHNVFRIMLPQ  450
            SLV+AIA LHGGSA+Y+Y + HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

92) yedV in NC_013364


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  379 bits (1424),  Expect = 2e-106, Method: Compositional matrix adjust.
 Identities = 244/451 (55%), Positives = 343/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRltllfilllSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDGINKI-VNRTNVSDDMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+   +++ +N++ ++D+ +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaivlcsvlSPLL  179
            +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSREPVEVSALPRELEPLGQALNKMHQALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P    ALP EL PLGQALN M+Q L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFKVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK ICF  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AVRYSPEKSHIHITSFLDTNGYLNIDVASPGTKIHEPEKLFRRFWRGDNSRHSVGQGLGL  419
            A+RYS E++ I+I S  D N   +I VA+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNV-AEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLNKHNVFRIMLPQ  450
            SLV+AIA LHGGSA+Y+Y + HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

93) SbBS512_E0915 in NC_010658


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  379 bits (1424),  Expect = 2e-106, Method: Compositional matrix adjust.
 Identities = 244/451 (55%), Positives = 342/451 (76%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRltllfilllSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDGINKI-VNRTNVSDGMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+   +++ +N++ ++D  +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaivlcsvlSPLL  179
            +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSREPVEVSVLPRELKPLGQALNKMHQALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P     LP EL+PLGQALN M+Q L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFKVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK ICF  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIHITSFLDTNGYLNIDVASPGTKIHEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N   +I VA+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNV-AEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLNKHNVFRIMLPQ  450
            SLV+AIA LHGGSA+Y+Y + HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

94) yedV in NC_013361


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  378 bits (1422),  Expect = 2e-106, Method: Compositional matrix adjust.
 Identities = 242/451 (54%), Positives = 344/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRltllfilllSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDSINKI-VNRTNVSDDMLNNIPATETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+ + +++ +N++ ++D+ +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaivlcsvlSPLL  179
            +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSREPVEVSALPRELKPLGQALNKMHHALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P    ALP EL+PLGQALN M++ L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDSLFLNKEVENLLDYLEYLSDEKEICFKVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++ LN  VEN+LDYL  L++EK ICF  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIHITSFLDTNGYLNIDIASPGTKINEPEKLFRRFWRGDNSRHSEGQGLGL  419
            AIRYS E++ I+I S  D N   +I +A+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNV-AEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYFNKHNVFRITLPQ  450
            SLV+AIA LHGGSA+Y+Y + HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

95) yedV in NC_007613


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  377 bits (1417),  Expect = 7e-106, Method: Compositional matrix adjust.
 Identities = 244/451 (55%), Positives = 343/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRltllfilllSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDGINKI-VNRTNVSDDMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+   +++ +N++ ++D+ +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaivlcsvlSPLL  179
            +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSREPVEVSALPRELKPLGQALNKMHQALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P    ALP EL+PLGQALN M+Q L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFKVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK ICF  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIHITSFLDTNGYLNIDIASLGTKIHEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N   +I +A+ G+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNV-AEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSASYHYLNKHNVFRITLPQ  450
            SLV+AIA LHGGSASY+Y + HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

96) yedV in NC_017631


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  377 bits (1416),  Expect = 8e-106, Method: Compositional matrix adjust.
 Identities = 242/451 (54%), Positives = 343/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRltllfilllSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDGINKI-VNRTNVSDDMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+   +++ +N++ ++D+ +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaiilcsvlSPLL  179
            +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSRVPVEVSALPRELKPLGQALNKMHHALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P    ALP EL+PLGQALN M++ L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQIRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDALSLNKEVENLLDYLEYLSDEKEIRFKVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK I F  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIHITSFLDANGSLNIDIASPGTKINEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N + +I +A+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNVA-EIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLSKHNVFRITLPQ  450
            SLV+AIA LHGGSA+Y+Y   HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

97) yedV in NC_004431


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  377 bits (1416),  Expect = 8e-106, Method: Compositional matrix adjust.
 Identities = 242/451 (54%), Positives = 343/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRltllfilllSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDGINKI-VNRTNVSDDMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+   +++ +N++ ++D+ +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaiilcsvlSPLL  179
            +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSRVPVEVSALPRELKPLGQALNKMHHALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P    ALP EL+PLGQALN M++ L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQIRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDALSLNKEVENLLDYLEYLSDEKEIRFKVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK I F  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIHITSFLDANGSLNIDIASPGTKINEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N + +I +A+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNVA-EIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLSKHNVFRITLPQ  450
            SLV+AIA LHGGSA+Y+Y   HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

98) yedV in NC_017652


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  377 bits (1416),  Expect = 8e-106, Method: Compositional matrix adjust.
 Identities = 242/451 (54%), Positives = 343/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRltllfilllSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDGINKI-VNRTNVSDDMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+   +++ +N++ ++D+ +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaiilcsvlSPLL  179
            +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSRVPVEVSALPRELKPLGQALNKMHHALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P    ALP EL+PLGQALN M++ L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQIRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDALSLNKEVENLLDYLEYLSDEKEIRFKVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK I F  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIHITSFLDANGSLNIDIASPGTKINEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N + +I +A+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNVA-EIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLSKHNVFRITLPQ  450
            SLV+AIA LHGGSA+Y+Y   HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

99) yedV in NC_017651


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  377 bits (1416),  Expect = 8e-106, Method: Compositional matrix adjust.
 Identities = 242/451 (54%), Positives = 343/451 (77%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRltllfilllSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDGINKI-VNRTNVSDDMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+   +++ +N++ ++D+ +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaiilcsvlSPLL  179
            +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSRVPVEVSALPRELKPLGQALNKMHHALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P    ALP EL+PLGQALN M++ L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQIRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDALSLNKEVENLLDYLEYLSDEKEIRFKVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK I F  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIHITSFLDANGSLNIDIASPGTKINEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N + +I +A+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNVA-EIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLSKHNVFRITLPQ  450
            SLV+AIA LHGGSA+Y+Y   HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

100) yedV in NC_002655


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  376 bits (1415),  Expect = 9e-106, Method: Compositional matrix adjust.
 Identities = 233/431 (55%), Positives = 328/431 (77%), Gaps = 2/431 (0%)

Query  21   AGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGVNPDTLPVYFNRMMDVSQDIL  80
            A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG  P+ L++YFNRM+D  QDIL
Sbjct  21   ACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGARPENLALYFNRMVDTKQDIL  80

Query  81   IIHGDGINKI-VNRTNVSDDMLNNIPASETISAAGIYRSIINDTEIDALRINIDEVSPSL  139
            +IH+   +++ +N++ ++D+ +N+IP +  I+   ++R  +++TE+ A+R+N      +L
Sbjct  81   LIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQAVQGTELTAVRVNARSGDDPL  140

Query  140  TVTVAKLASARHNMLEQYKinsiiicivaiilcsvlSPLLIRTGLREIKKLSGVTEALNY  199
            T+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+IR +LR I  LS +T A + 
Sbjct  141  TLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLVIRNALRAITSLSRLTAASDS  200

Query  200  NDSREPVEVSALPRELKPLGQALNKMHHALVKDFERLSQFADDLAHELRTPINALLGQNQ  259
               R P    ALP EL+PLGQALN M++ L  DFERL+QFADDLAHELRTP+N LLG+NQ
Sbjct  201  GTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQFADDLAHELRTPVNILLGKNQ  260

Query  260  VTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARADKNNVLVKLDSLSLNKEVENL  319
            V LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+ +N+ VK +++SLN  VEN+
Sbjct  261  VMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAEHQNIAVKKQPVSLNALVENM  320

Query  320  LDYLEYLSDEKEICFKVECNQQIFADKILLQRMLSNLIVNAIRYSPEKSRIHITSFLDTN  379
            LDYL  L++EK ICF  +C+  + AD ILLQR+LSNL+ NAIRYS E++ I+I S  D N
Sbjct  321  LDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTNAIRYSDENAVIRIESAYDDN  380

Query  380  SYLNIDIASPGAKINEPEKLFRRFWRGDNSRHSVGQGLGLSLVKAIAELHGGSATYHYLN  439
               +I +A+PG+   +++KLFRRFWRGDN+ H+ G  LGLSLV+AIA LHGGSA+Y+Y +
Sbjct  381  V-AEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLSLVNAIALLHGGSASYRYAD  439

Query  440  KHNVFRITLPQ  450
             HN+F + LP+
Sbjct  440  EHNIFSVRLPD  450

101) yedV in NC_011750


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  376 bits (1415),  Expect = 9e-106, Method: Compositional matrix adjust.
 Identities = 242/451 (54%), Positives = 342/451 (76%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRltllfilllSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDGINKI-VNRTNVSDDMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+   +++ +N++ ++D+ +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDAFRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaiilcsvlSPLL  179
            +++TE+ A R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSRVPVEVSALPRELKPLGQALNKMHHALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P    ALP EL+PLGQALN M++ L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDALSLNKEVENLLDYLEYLSDEKEIRFKVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK I F  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIHITSFLDANGSLNIDIASPGTKINEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N + +I +A+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNVA-EIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLSKHNVFRITLPQ  450
            SLV+AIA LHGGSA+Y+Y   HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

102) yedV in NC_017646


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  376 bits (1415),  Expect = 9e-106, Method: Compositional matrix adjust.
 Identities = 242/451 (54%), Positives = 342/451 (76%), Gaps = 2/451 (0%)

Query  1    MKRLSITVRltllfilllSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV  60
            M +LS+T+RLT+ FI +L +A +GI WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG 
Sbjct  1    MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGA  60

Query  61   NPDTLPVYFNRMMDVSQDILIIHGDGINKI-VNRTNVSDDMLNNIPASETISAAGIYRSI  119
             P+ L++YFNRM+D  QDIL+IH+   +++ +N++ ++D+ +N+IP +  I+   ++R  
Sbjct  61   RPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQA  120

Query  120  INDTEIDAFRINIDEVSPSLTVTVAKLASARHNMLEQYKinsiiicivaiilcsvlSPLL  179
            +++TE+ A R+N      +LT+T+A LA+ R++ML QY+ NS++I ++AI++CS LSPL+
Sbjct  121  VQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLV  180

Query  180  IRTGLREIKKLSGVTEALNYNDSRVPVEVSALPRELKPLGQALNKMHHALVKDFERLSQF  239
            IR +LR I  LS +T A +    R P    ALP EL+PLGQALN M++ L  DFERL+QF
Sbjct  181  IRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQF  240

Query  240  ADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARAD  299
            ADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +NIEELE +SRLTENILFLARA+
Sbjct  241  ADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE  300

Query  300  KNNVLVKLDALSLNKEVENLLDYLEYLSDEKEIRFKVECNQQIFADKILLQRMLSNLIVN  359
             +N+ VK +++SLN  VEN+LDYL  L++EK I F  +C+  + AD ILLQR+LSNL+ N
Sbjct  301  HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTN  360

Query  360  AIRYSPEKSRIHITSFLDANGSLNIDIASPGTKINEPEKLFRRFWRGDNSRHSVGQGLGL  419
            AIRYS E++ I+I S  D N + +I +A+PG+   +++KLFRRFWRGDN+ H+ G  LGL
Sbjct  361  AIRYSDENAVIRIESAYDDNVA-EIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGL  419

Query  420  SLVKAIAELHGGSATYHYLSKHNVFRITLPQ  450
            SLV+AIA LHGGSA+Y+Y   HN+F + LP+
Sbjct  420  SLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

103) EC042_2124 in NC_017626


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  359 bits (1347),  Expect = 2e-100, Method: Compositional matrix adjust.
 Identities = 231/427 (55%), Positives = 325/427 (77%), Gaps = 2/427 (0%)

Query  25   IVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGVNPDTLPVYFNRMMDVSQDILIIHG  84
            I WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG  P+ L++YFNRM+D  QDIL+IH+
Sbjct  25   ISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGARPENLALYFNRMVDTKQDILLIHS  84

Query  85   DGINKI-VNRTNVSNGMLNNIPATETISAAGIYRSIINDTEIDALRINIDEVSPSLTVTV  143
               +++ +N++ +++  +N+IP +  I+   ++R  +++TE+ A+R+N      +LT+T+
Sbjct  85   ATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQAVQGTELTAVRVNARSGDDPLTLTI  144

Query  144  AKLASARHNMLEQYKinsiiicivaiilcsvlSPLLIRTGLREIKKLSGVTEALNYNDNR  203
            A LA+ R++ML QY+ NS++I ++AI++CS LSPL+IR +LR I  LS +T A +    R
Sbjct  145  ASLATERRQMLTQYRRNSLLISLIAILVCSALSPLVIRNALRAITSLSRLTAASDSGTLR  204

Query  204  EPVEVSALPRELKPLGQALNKMHQALVKDFERLSQFADDLAHELRTPINALLGQNQVTLS  263
             P    ALP EL+PLGQALN M+Q L  DFERL+QFADDLAHELRTP+N LLG+NQV LS
Sbjct  205  PPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQFADDLAHELRTPVNILLGKNQVMLS  264

Query  264  QTRSIAEYQKTIAGNIEELENISRLTENILFLARADKNNVLVKldslslnnevenlldYL  323
            Q RS  EYQ+++ +NIEELE +SRLTENILFLARA+ +N+ VK +++SLN  VEN+LDYL
Sbjct  265  QERSAEEYQQALVDNIEELEGLSRLTENILFLARAEHQNIAVKKQPVSLNALVENMLDYL  324

Query  324  EYLSDEKEICFKVECNQHIFADKILLQRMLSNLIVNAIRYSPEKSCIQITSFLDTNGSLN  383
              L++EK ICF  +C+  + AD ILLQR+LSNL+ NAIRYS E++ I+I S  D N + +
Sbjct  325  SPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTNAIRYSDENAVIRIESAYDDNVA-E  383

Query  384  IDIASPGTKIHEPEKLFRRFWRGDNSRHSVGQGLGLSLVKAIAELHGGSATYHYLNKHNV  443
            I +A+PG+   +++KLFRRFWRGDN+ H+ G  LGLSLV+AIA LHGGSA+Y+Y + HN+
Sbjct  384  IRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLSLVNAIALLHGGSASYRYADEHNI  443

Query  444  FRITLPQ  450
            F + LP+
Sbjct  444  FSVRLPD  450

104) yedV in NC_008563


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  358 bits (1346),  Expect = 3e-100, Method: Compositional matrix adjust.
 Identities = 231/427 (55%), Positives = 324/427 (76%), Gaps = 2/427 (0%)

Query  25   IVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGVNPDTLPVYFNRMMDVSQDILIIHG  84
            I WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG  P+ L++YFNRM+D  QDIL+IH+
Sbjct  25   ISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGARPENLALYFNRMVDTKQDILLIHS  84

Query  85   DGINKI-VNRTNVSNGMLNNIPASETISAAGIYRSIINDTEIDALRINIDEVSPSLTVTV  143
               +++ +N++ +++  +N+IP +  I+   ++R  +++TE+ A+R+N      +LT+T+
Sbjct  85   ATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQAVQGTELTAVRVNARSGDDPLTLTI  144

Query  144  AKLASARHNMLEQYKinsiiicivaiilcsvlSPLLIRTGLREIKKLSGVTEALNYNDSR  203
            A LA+ R++ML QY+ NS++I ++AI++CS LSPL+IR +LR I  LS +T A +    R
Sbjct  145  ASLATERRQMLTQYRRNSLLISLIAILVCSALSPLVIRNALRAITSLSRLTAASDSGTLR  204

Query  204  EPVEVSALPRELKPLGQALNKMHQALVKDFERLSQFADDLAHELRTPINALLGQNQVTLS  263
             P    ALP EL+PLGQALN M+Q L  DFERL+QFADDLAHELRTP+N LLG+NQV LS
Sbjct  205  PPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQFADDLAHELRTPVNILLGKNQVMLS  264

Query  264  QTRSIAEYQKTIAGNIEELENISRLTENILFLARADKNNVLVKldslslnnevenlldYL  323
            Q RS  EYQ+++ +NIEELE +SRLTENILFLARA+ +N+ VK +++SLN  VEN+LDYL
Sbjct  265  QERSAEEYQQALVDNIEELEGLSRLTENILFLARAEHQNIAVKKQPVSLNALVENMLDYL  324

Query  324  EYLSDEKEICFKVECNQHIFADKILLQRMLSNLIVNAIRYSPEKSRIQITSFLDTNGSLN  383
              L++EK ICF  +C+  + AD ILLQR+LSNL+ NAIRYS E++ I+I S  D N + +
Sbjct  325  SPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTNAIRYSDENAVIRIESAYDDNVA-E  383

Query  384  IDIASPGTKIHEPEKLFRRFWRGDNSRHSVGQGLGLSLVKAIAELHGGSATYHYLSKHNV  443
            I +A+PG+   +++KLFRRFWRGDN+ H+ G  LGLSLV+AIA LHGGSA+Y+Y   HN+
Sbjct  384  IRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLSLVNAIALLHGGSASYRYADEHNI  443

Query  444  FRITLPQ  450
            F + LP+
Sbjct  444  FSVRLPD  450

105) ETEC_2068 in NC_017633


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  358 bits (1346),  Expect = 3e-100, Method: Compositional matrix adjust.
 Identities = 231/427 (55%), Positives = 324/427 (76%), Gaps = 2/427 (0%)

Query  25   IVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGVNPDTLPVYFNRMMDVSQDILIIHG  84
            I WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG  P+ L++YFNRM+D  QDIL+IH+
Sbjct  25   ISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGARPENLALYFNRMVDTKQDILLIHS  84

Query  85   DGINKI-VNRTNVSNGMLNNIPASETISAAGIYRSIINDTEIDALRINIDEVSPSLTVTV  143
               +++ +N++ +++  +N+IP +  I+   ++R  +++TE+ A+R+N      +LT+T+
Sbjct  85   ATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQAVQGTELTAVRVNARSGDDPLTLTI  144

Query  144  AKLASARHNMLEQYKinsiiicivaiilcsvlSPLLIRTGLREIKKLSGVTEALNYNDSR  203
            A LA+ R++ML QY+ NS++I ++AI++CS LSPL+IR +LR I  LS +T A +    R
Sbjct  145  ASLATERRQMLTQYRRNSLLISLIAILVCSALSPLVIRNALRAITSLSRLTAASDSGTLR  204

Query  204  EPVEVSALPRELKPLGQALNKMHQALVKDFERLSQFADDLAHELRTPINALLGQNQVTLS  263
             P    ALP EL+PLGQALN M+Q L  DFERL+QFADDLAHELRTP+N LLG+NQV LS
Sbjct  205  PPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQFADDLAHELRTPVNILLGKNQVMLS  264

Query  264  QTRSIAEYQKTIAGNIEELENISRLTENILFLARADKNNVLVKldslslnnevenlldYL  323
            Q RS  EYQ+++ +NIEELE +SRLTENILFLARA+ +N+ VK +++SLN  VEN+LDYL
Sbjct  265  QERSAEEYQQALVDNIEELEGLSRLTENILFLARAEHQNIAVKKQPVSLNALVENMLDYL  324

Query  324  EYLSDEKEICFKVECNQHIFADKILLQRMLSNLIVNAIRYSPEKSRIQITSFLDTNGSLN  383
              L++EK ICF  +C+  + AD ILLQR+LSNL+ NAIRYS E++ I+I S  D N + +
Sbjct  325  SPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTNAIRYSDENAVIRIESAYDDNVA-E  383

Query  384  IDIASPGTKIHEPEKLFRRFWRGDNSRHSVGQGLGLSLVKAIAELHGGSATYHYLSKHNV  443
            I +A+PG+   +++KLFRRFWRGDN+ H+ G  LGLSLV+AIA LHGGSA+Y+Y   HN+
Sbjct  384  IRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLSLVNAIALLHGGSASYRYADEHNI  443

Query  444  FRITLPQ  450
            F + LP+
Sbjct  444  FSVRLPD  450

106) ECOK1_2081 in NC_017628


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  358 bits (1346),  Expect = 3e-100, Method: Compositional matrix adjust.
 Identities = 231/427 (55%), Positives = 324/427 (76%), Gaps = 2/427 (0%)

Query  25   IVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGVNPDTLPVYFNRMMDVSQDILIIHG  84
            I WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG  P+ L++YFNRM+D  QDIL+IH+
Sbjct  25   ISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGARPENLALYFNRMVDTKQDILLIHS  84

Query  85   DGINKI-VNRTNVSNGMLNNIPASETISAAGIYRSIINDTEIDALRINIDEVSPSLTVTV  143
               +++ +N++ +++  +N+IP +  I+   ++R  +++TE+ A+R+N      +LT+T+
Sbjct  85   ATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQAVQGTELTAVRVNARSGDDPLTLTI  144

Query  144  AKLASARHNMLEQYKinsiiicivaiilcsvlSPLLIRTGLREIKKLSGVTEALNYNDSR  203
            A LA+ R++ML QY+ NS++I ++AI++CS LSPL+IR +LR I  LS +T A +    R
Sbjct  145  ASLATERRQMLTQYRRNSLLISLIAILVCSALSPLVIRNALRAITSLSRLTAASDSGTLR  204

Query  204  EPVEVSALPRELKPLGQALNKMHQALVKDFERLSQFADDLAHELRTPINALLGQNQVTLS  263
             P    ALP EL+PLGQALN M+Q L  DFERL+QFADDLAHELRTP+N LLG+NQV LS
Sbjct  205  PPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQFADDLAHELRTPVNILLGKNQVMLS  264

Query  264  QTRSIAEYQKTIAGNIEELENISRLTENILFLARADKNNVLVKldslslnnevenlldYL  323
            Q RS  EYQ+++ +NIEELE +SRLTENILFLARA+ +N+ VK +++SLN  VEN+LDYL
Sbjct  265  QERSAEEYQQALVDNIEELEGLSRLTENILFLARAEHQNIAVKKQPVSLNALVENMLDYL  324

Query  324  EYLSDEKEICFKVECNQHIFADKILLQRMLSNLIVNAIRYSPEKSRIQITSFLDTNGSLN  383
              L++EK ICF  +C+  + AD ILLQR+LSNL+ NAIRYS E++ I+I S  D N + +
Sbjct  325  SPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTNAIRYSDENAVIRIESAYDDNVA-E  383

Query  384  IDIASPGTKIHEPEKLFRRFWRGDNSRHSVGQGLGLSLVKAIAELHGGSATYHYLSKHNV  443
            I +A+PG+   +++KLFRRFWRGDN+ H+ G  LGLSLV+AIA LHGGSA+Y+Y   HN+
Sbjct  384  IRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLSLVNAIALLHGGSASYRYADEHNI  443

Query  444  FRITLPQ  450
            F + LP+
Sbjct  444  FSVRLPD  450

107) yedV in NC_022370


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  358 bits (1346),  Expect = 3e-100, Method: Compositional matrix adjust.
 Identities = 231/427 (55%), Positives = 324/427 (76%), Gaps = 2/427 (0%)

Query  25   IVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGVNPDTLPVYFNRMMDVSQDILIIHG  84
            I WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG  P+ L++YFNRM+D  QDIL+IH+
Sbjct  25   ISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGARPENLALYFNRMVDTKQDILLIHS  84

Query  85   DGINKI-VNRTNVSNGMLNNIPASETISAAGIYRSIINDTEIDALRINIDEVSPSLTVTV  143
               +++ +N++ +++  +N+IP +  I+   ++R  +++TE+ A+R+N      +LT+T+
Sbjct  85   ATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQAVQGTELTAVRVNARSGDDPLTLTI  144

Query  144  AKLASARHNMLEQYKinsiiicivaiilcsvlSPLLIRTGLREIKKLSGVTEALNYNDSR  203
            A LA+ R++ML QY+ NS++I ++AI++CS LSPL+IR +LR I  LS +T A +    R
Sbjct  145  ASLATERRQMLTQYRRNSLLISLIAILVCSALSPLVIRNALRAITSLSRLTAASDSGTLR  204

Query  204  EPVEVSALPRELKPLGQALNKMHQALVKDFERLSQFADDLAHELRTPINALLGQNQVTLS  263
             P    ALP EL+PLGQALN M+Q L  DFERL+QFADDLAHELRTP+N LLG+NQV LS
Sbjct  205  PPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQFADDLAHELRTPVNILLGKNQVMLS  264

Query  264  QTRSIAEYQKTIAGNIEELENISRLTENILFLARADKNNVLVKldslslnnevenlldYL  323
            Q RS  EYQ+++ +NIEELE +SRLTENILFLARA+ +N+ VK +++SLN  VEN+LDYL
Sbjct  265  QERSAEEYQQALVDNIEELEGLSRLTENILFLARAEHQNIAVKKQPVSLNALVENMLDYL  324

Query  324  EYLSDEKEICFKVECNQHIFADKILLQRMLSNLIVNAIRYSPEKSRIQITSFLDTNGSLN  383
              L++EK ICF  +C+  + AD ILLQR+LSNL+ NAIRYS E++ I+I S  D N + +
Sbjct  325  SPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTNAIRYSDENAVIRIESAYDDNVA-E  383

Query  384  IDIASPGTKIHEPEKLFRRFWRGDNSRHSVGQGLGLSLVKAIAELHGGSATYHYLSKHNV  443
            I +A+PG+   +++KLFRRFWRGDN+ H+ G  LGLSLV+AIA LHGGSA+Y+Y   HN+
Sbjct  384  IRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLSLVNAIALLHGGSASYRYADEHNI  443

Query  444  FRITLPQ  450
            F + LP+
Sbjct  444  FSVRLPD  450

108) yedV in NC_011742


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  358 bits (1346),  Expect = 3e-100, Method: Compositional matrix adjust.
 Identities = 231/427 (55%), Positives = 324/427 (76%), Gaps = 2/427 (0%)

Query  25   IVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGVNPDTLPVYFNRMMDVSQDILIIHG  84
            I WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG  P+ L++YFNRM+D  QDIL+IH+
Sbjct  25   ISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGARPENLALYFNRMVDTKQDILLIHS  84

Query  85   DGINKI-VNRTNVSNGMLNNIPASETISAAGIYRSIINDTEIDALRINIDEVSPSLTVTV  143
               +++ +N++ +++  +N+IP +  I+   ++R  +++TE+ A+R+N      +LT+T+
Sbjct  85   ATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQAVQGTELTAVRVNARSGDDPLTLTI  144

Query  144  AKLASARHNMLEQYKinsiiicivaiilcsvlSPLLIRTGLREIKKLSGVTEALNYNDSR  203
            A LA+ R++ML QY+ NS++I ++AI++CS LSPL+IR +LR I  LS +T A +    R
Sbjct  145  ASLATERRQMLTQYRRNSLLISLIAILVCSALSPLVIRNALRAITSLSRLTAASDSGTLR  204

Query  204  EPVEVSALPRELKPLGQALNKMHQALVKDFERLSQFADDLAHELRTPINALLGQNQVTLS  263
             P    ALP EL+PLGQALN M+Q L  DFERL+QFADDLAHELRTP+N LLG+NQV LS
Sbjct  205  PPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQFADDLAHELRTPVNILLGKNQVMLS  264

Query  264  QTRSIAEYQKTIAGNIEELENISRLTENILFLARADKNNVLVKldslslnnevenlldYL  323
            Q RS  EYQ+++ +NIEELE +SRLTENILFLARA+ +N+ VK +++SLN  VEN+LDYL
Sbjct  265  QERSAEEYQQALVDNIEELEGLSRLTENILFLARAEHQNIAVKKQPVSLNALVENMLDYL  324

Query  324  EYLSDEKEICFKVECNQHIFADKILLQRMLSNLIVNAIRYSPEKSRIQITSFLDTNGSLN  383
              L++EK ICF  +C+  + AD ILLQR+LSNL+ NAIRYS E++ I+I S  D N + +
Sbjct  325  SPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTNAIRYSDENAVIRIESAYDDNVA-E  383

Query  384  IDIASPGTKIHEPEKLFRRFWRGDNSRHSVGQGLGLSLVKAIAELHGGSATYHYLSKHNV  443
            I +A+PG+   +++KLFRRFWRGDN+ H+ G  LGLSLV+AIA LHGGSA+Y+Y   HN+
Sbjct  384  IRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLSLVNAIALLHGGSASYRYADEHNI  443

Query  444  FRITLPQ  450
            F + LP+
Sbjct  444  FSVRLPD  450

109) UM146_07360 in NC_017632


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  358 bits (1346),  Expect = 3e-100, Method: Compositional matrix adjust.
 Identities = 231/427 (55%), Positives = 324/427 (76%), Gaps = 2/427 (0%)

Query  25   IVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGVNPDTLPVYFNRMMDVSQDILIIHG  84
            I WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG  P+ L++YFNRM+D  QDIL+IH+
Sbjct  25   ISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGARPENLALYFNRMVDTKQDILLIHS  84

Query  85   DGINKI-VNRTNVSNGMLNNIPASETISAAGIYRSIINDTEIDALRINIDEVSPSLTVTV  143
               +++ +N++ +++  +N+IP +  I+   ++R  +++TE+ A+R+N      +LT+T+
Sbjct  85   ATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQAVQGTELTAVRVNARSGDDPLTLTI  144

Query  144  AKLASARHNMLEQYKinsiiicivaiilcsvlSPLLIRTGLREIKKLSGVTEALNYNDSR  203
            A LA+ R++ML QY+ NS++I ++AI++CS LSPL+IR +LR I  LS +T A +    R
Sbjct  145  ASLATERRQMLTQYRRNSLLISLIAILVCSALSPLVIRNALRAITSLSRLTAASDSGTLR  204

Query  204  EPVEVSALPRELKPLGQALNKMHQALVKDFERLSQFADDLAHELRTPINALLGQNQVTLS  263
             P    ALP EL+PLGQALN M+Q L  DFERL+QFADDLAHELRTP+N LLG+NQV LS
Sbjct  205  PPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQFADDLAHELRTPVNILLGKNQVMLS  264

Query  264  QTRSIAEYQKTIAGNIEELENISRLTENILFLARADKNNVLVKldslslnnevenlldYL  323
            Q RS  EYQ+++ +NIEELE +SRLTENILFLARA+ +N+ VK +++SLN  VEN+LDYL
Sbjct  265  QERSAEEYQQALVDNIEELEGLSRLTENILFLARAEHQNIAVKKQPVSLNALVENMLDYL  324

Query  324  EYLSDEKEICFKVECNQHIFADKILLQRMLSNLIVNAIRYSPEKSRIQITSFLDTNGSLN  383
              L++EK ICF  +C+  + AD ILLQR+LSNL+ NAIRYS E++ I+I S  D N + +
Sbjct  325  SPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTNAIRYSDENAVIRIESAYDDNVA-E  383

Query  384  IDIASPGTKIHEPEKLFRRFWRGDNSRHSVGQGLGLSLVKAIAELHGGSATYHYLSKHNV  443
            I +A+PG+   +++KLFRRFWRGDN+ H+ G  LGLSLV+AIA LHGGSA+Y+Y   HN+
Sbjct  384  IRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLSLVNAIALLHGGSASYRYADEHNI  443

Query  444  FRITLPQ  450
            F + LP+
Sbjct  444  FSVRLPD  450

110) yedV in NC_007946


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  358 bits (1346),  Expect = 3e-100, Method: Compositional matrix adjust.
 Identities = 231/427 (55%), Positives = 324/427 (76%), Gaps = 2/427 (0%)

Query  25   IVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGVNPDTLPVYFNRMMDVSQDILIIHG  84
            I WTLYN+L+ EL  RDD TLINR+AQ++QLL+DG  P+ L++YFNRM+D  QDIL+IH+
Sbjct  25   ISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGARPENLALYFNRMVDTKQDILLIHS  84

Query  85   DGINKI-VNRTNVSNGMLNNIPASETISAAGIYRSIINDTEIDALRINIDEVSPSLTVTV  143
               +++ +N++ +++  +N+IP +  I+   ++R  +++TE+ A+R+N      +LT+T+
Sbjct  85   ATGHNVAINHSGIPDQRFNEIPLAKNITRETLFRQAVQGTELTAVRVNARSGDDPLTLTI  144

Query  144  AKLASARHNMLEQYKinsiiicivaiilcsvlSPLLIRTGLREIKKLSGVTEALNYNDSR  203
            A LA+ R++ML QY+ NS++I ++AI++CS LSPL+IR +LR I  LS +T A +    R
Sbjct  145  ASLATERRQMLTQYRRNSLLISLIAILVCSALSPLVIRNALRAITSLSRLTAASDSGTLR  204

Query  204  EPVEVSALPRELKPLGQALNKMHQALVKDFERLSQFADDLAHELRTPINALLGQNQVTLS  263
             P    ALP EL+PLGQALN M+Q L  DFERL+QFADDLAHELRTP+N LLG+NQV LS
Sbjct  205  PPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQFADDLAHELRTPVNILLGKNQVMLS  264

Query  264  QTRSIAEYQKTIAGNIEELENISRLTENILFLARADKNNVLVKldslslnnevenlldYL  323
            Q RS  EYQ+++ +NIEELE +SRLTENILFLARA+ +N+ VK +++SLN  VEN+LDYL
Sbjct  265  QERSAEEYQQALVDNIEELEGLSRLTENILFLARAEHQNIAVKKQPVSLNALVENMLDYL  324

Query  324  EYLSDEKEICFKVECNQHIFADKILLQRMLSNLIVNAIRYSPEKSRIQITSFLDTNGSLN  383
              L++EK ICF  +C+  + AD ILLQR+LSNL+ NAIRYS E++ I+I S  D N + +
Sbjct  325  SPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTNAIRYSDENAVIRIESAYDDNVA-E  383

Query  384  IDIASPGTKIHEPEKLFRRFWRGDNSRHSVGQGLGLSLVKAIAELHGGSATYHYLSKHNV  443
            I +A+PG+   +++KLFRRFWRGDN+ H+ G  LGLSLV+AIA LHGGSA+Y+Y   HN+
Sbjct  384  IRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLSLVNAIALLHGGSASYRYADEHNI  443

Query  444  FRITLPQ  450
            F + LP+
Sbjct  444  FSVRLPD  450

111) yedV in NC_017644


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  350 bits (1315),  Expect = 7e-98, Method: Compositional matrix adjust.
 Identities = 221/412 (54%), Positives = 314/412 (77%), Gaps = 2/412 (0%)

Query  4    RDDTTLINRTAQIKQLLIDGVNPDTLPVYFNRMMDVSQDILIIHGDGINKI-VNRTNVSD  62
            RDD TLINR+AQ++QLL+DG  P+ L++YFNRM+D  QDIL+IH+   +++ +N++ ++D
Sbjct  40   RDDMTLINRAAQMQQLLLDGARPENLALYFNRMVDTKQDILLIHSATGHNVAINHSGIPD  99

Query  63   DMLNNIPASETISAAGIYRSIINDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYK  122
            + +N+IP +  I+   ++R  +++TE+ A+R+N      +LT+T+A LA+ R++ML QY+
Sbjct  100  QRFNEIPLAKNITRETLFRQAVQGTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYR  159

Query  123  INsiiicivviilcsllsplliRTGLREIKKLSGVTEALNYNDSRVPVEVNALPRELKPL  182
             NS++I ++ I++CS LSPL+IR +LR I  LS +T A +    R P   +ALP EL+PL
Sbjct  160  RNSLLISLIAILVCSALSPLVIRNALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPL  219

Query  183  GQALNKMHHALVKDFERLSQFADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGN  242
            GQALN M++ L  DFERL+QFADDLAHELRTP+N LLG+NQV LSQ RS  EYQ+++ +N
Sbjct  220  GQALNTMRQKLSDDFERLNQFADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDN  279

Query  243  IEELENISRLTENILFLARADKNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFKVKC  302
            IEELE +SRLTENILFLARA+ +N+ VK +++SLN  VEN+LDYL  L++EK ICF  +C
Sbjct  280  IEELEGLSRLTENILFLARAEHQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQC  339

Query  303  NQQIFADKILLQRMLSNLIVNAIRYSPEKSRIHITSFLDANGSLNIDIASPGTKINEPEK  362
            +  + AD ILLQR+LSNL+ NAIRYS E++ I+I S  D N + +I +A+PG+   +++K
Sbjct  340  QGTVWADEILLQRVLSNLLTNAIRYSDENAVIRIESAYDDNVA-EIRVANPGSHPADADK  398

Query  363  LFRRFWRGDNSRHSVGQGLGLSLVKAIAELHGGSATYHYLSKHNVFRITLPQ  414
            LFRRFWRGDN+ H+ G  LGLSLV+AIA LHGGSA+Y+Y   HN+F + LP+
Sbjct  399  LFRRFWRGDNACHTAGFPLGLSLVNAIALLHGGSASYRYADEHNIFSVRLPD  450

112) yedV in NC_017910


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  308 bits (1154),  Expect = 4e-85, Method: Compositional matrix adjust.
 Identities = 202/449 (45%), Positives = 320/449 (72%), Gaps = 4/449 (0%)

Query  1    MSLVQRITLSMVVLMALTCGAVVATLYHGLQRALILRDEQTLSNRAEQIDQLLRDGAPAQ  60
            +S+  R+T+S + ++ L+C ++  TLY++L + L  RD+ TL NRA Q++QLL DGA ++
Sbjct  4    LSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGARPE  63

Query  61   TLPRYFDRMMDTAQDILVIQPARGEAIVMNRTGVVLPESFSRRAFDAGKINHLTDRDGV-  119
             L+ YF+RM+DT QDIL+I++A G+ + +N++G+   + F+  ++      +   R++V 
Sbjct  64   NLALYFNRMVDTKQDILLIHSATGHNVAINHSGIP-DQRFNEIPLAKNITRETLFRQAVQ  122

Query  120  --DISLLRIASRAGEMPVLLTVARVARTRGEMLASYHRLSLVVCAGAIVLCLVISPLLIR  177
              +++ +R+ +R+G+ P+ LT+A +A  R +ML+ Y+R SL++   AI++C  +SPL+IR
Sbjct  123  GTELTAVRVNARSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLVIR  182

Query  178  RGLRAIRVLSRMTETISSAQLGQplaaerlpeellplaaalnrmrarlaEDFTRLTQFCD  237
             +LRAI  LSR+T +  S+ L  P A + LP EL PL+ ALN MR +L++DF RL QF D
Sbjct  183  NALRAITSLSRLTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQFAD  242

Query  238  DLAHEMRTPVSVLLGQNQVMLSKPRTVADYQRLIEDNIEELEGLTRLTDSLLFLARAEHR  297
            DLAHE+RTPV++LLG+NQVMLS+ R+  +YQ+ + DNIEELEGL+RLT+++LFLARAEH+
Sbjct  243  DLAHELRTPVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAEHQ  302

Query  298  NVGLERQTFAPGELLADICAFLAPLAEEKQLALRVQAGGQLNADKLLFQRAVINLLTNGI  357
            N+++ +Q  +   L+ ++  +L+PLAEEK++ +  Q  G + AD +L+QR + NLLTN+I
Sbjct  303  NIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTNAI  362

Query  358  RHAPAGSAVHITALARPGSLTIEVANPGPPLARPDRLFQRFWRGEDARHTPGSGLGLALV  417
            R +   + ++I +        I VANPG+  A +D+LF+RFWRG++A HT+G  LGL+LV
Sbjct  363  RYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLSLV  422

Query  418  SAIAALHGGEAGYRHQRGSNIFFIRFSQP  446
            +AIA LHGG A+YR     NIF +R++++
Sbjct  423  NAIALLHGGSASYRYADEHNIFSVRLPDS  451

113) yedV in NC_017933


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  307 bits (1152),  Expect = 6e-85, Method: Compositional matrix adjust.
 Identities = 219/436 (51%), Positives = 322/436 (74%), Gaps = 2/436 (0%)

Query  18   VAFACGVTGVSLYRSLSAELLWRDDQTLLNRASQLRQLLTDGAEPRQLPLYFNRMLDTRQ  77
            + +AC   + +LY +LS EL  RDD TL+NRA+Q++QLL DGA P +L+LYFNRM+DT+Q
Sbjct  18   LILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGARPENLALYFNRMVDTKQ  77

Query  78   DLLMIKRAEGETLVNINQAGVALPTLAPVPPGRGVNEQALHRWQRPDGVSISALALTAND  137
            D+L+I  A G+  V IN++G++   +  +P ++ +  ++L R Q  +G  ++A+ + A  
Sbjct  78   DILLIHSATGHN-VAINHSGIPDQRFNEIPLAKNITRETLFR-QAVQGTELTAVRVNARS  135

Query  138  ARGPLIITVARVAQERAQMLAQYRRESLMVCllatlaaallSPWlirrglraiarlSEAT  197
            + +PL +T+A +A ER QML+QYRR+SL++ L+A L  + LSP +IR +LRAI+ LS  T
Sbjct  136  GDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLVIRNALRAITSLSRLT  195

Query  198  ARTGSETLQQPLSLETLPRELLPLGEALNTMRHRLAEDFARLTRFADDLAHELRTPVNIL  257
            A ++S TL+ P + ++LP EL PLG+ALNTMR++L++DF RL +FADDLAHELRTPVNIL
Sbjct  196  AASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQFADDLAHELRTPVNIL  255

Query  258  LGQNQVALQRPRSVQEYQSLLAGNIEELEQMTRLIENILFLARADHQNIALKRERLALEP  317
            LG+NQV L + RS +EYQ  L +NIEELE ++RL ENILFLARA+HQNIA+K++ ++L++
Sbjct  256  LGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAEHQNIAVKKQPVSLNA  315

Query  318  FIHQLTDFLEPLAEEQEITFNVQAQGDIFADrlllqraltnlltnalRHAPAGSEVRITA  377
            +++++ D+L PLAEE+ I F  Q QG + AD +LLQR L+NLLTNA+R +   + +RI +
Sbjct  316  LVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTNAIRYSDENAVIRIES  375

Query  378  VQEAGETVLSVANQGAPIAEAEKLFQRFWRGDNARHTPGTGLGLALTEAIARLHGGGTAV  437
              +   + + VAN G+  A+A+KLF+RFWRGDNA HT+G  LGL+L +AIA LHGG+++ 
Sbjct  376  AYDDNVAEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLSLVNAIALLHGGSASY  435

Query  438  DHEAGWNRFRLRFPAA  453
                  N F +R+P +
Sbjct  436  RYADEHNIFSVRLPDS  451

114) yedV in NC_013282


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  306 bits (1148),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 218/438 (50%), Positives = 317/438 (73%), Gaps = 6/438 (1%)

Query  1    MAFACGLTGVS--LYRSLSGELVWRDDQTLLNRASQLRQLLTDGAEPRQLPLFFNRMLDT  58
            + +AC  TG+S  LY +LS EL  RDD TL+NRA+Q++QLL DGA P +L+L+FNRM+DT
Sbjct  18   LILAC--TGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGARPENLALYFNRMVDT  75

Query  59   RQDLLLIKRADGETLVNINQAGVTLPTLAPVPPGRSVNAQALHRWQRPDGVFISALALTA  118
            +QD+LLI  A G+  V IN++G+    +  +P ++++  ++L R Q  +G  ++A+ + A
Sbjct  76   KQDILLIHSATGHN-VAINHSGIPDQRFNEIPLAKNITRETLFR-QAVQGTELTAVRVNA  133

Query  119  SDDRGPLIITVARVAQERAQMLAQYRRESLMVCllatlaaallSPWLIRRGLRAVTRLSE  178
              + +PL +T+A +A ER QML+QYRR+SL++ L+A L  + LSP +IR +LRA+T LS 
Sbjct  134  RSGDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLVIRNALRAITSLSR  193

Query  179  ATARTGSETLQQPLSLETLPRELLPLGEALNTMRHRLAEDFARLTRFADDLAHELRTPVN  238
             TA ++S TL+ P + ++LP EL PLG+ALNTMR++L++DF RL +FADDLAHELRTPVN
Sbjct  194  LTAASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQFADDLAHELRTPVN  253

Query  239  ILLGQNQVALQRPRSVTEYQSLLAGNIEELEQMTRLIENILFLARADHQNIALKRESLAL  298
            ILLG+NQV L + RS  EYQ  L +NIEELE ++RL ENILFLARA+HQNIA+K+++++L
Sbjct  254  ILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAEHQNIAVKKQPVSL  313

Query  299  EPFIYPLTDFLEPLAEEQNITFRVQASGAIFADrlllqraltnlltnalRHAPMGSEVRI  358
            ++++  + D+L PLAEE+ I F  Q  G++ AD +LLQR L+NLLTNA+R +   + +RI
Sbjct  314  NALVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTNAIRYSDENAVIRI  373

Query  359  VAVQEAGETVLSVANQGAPVEEAEKLFLPFWRGDNARATPGTGLGLALTQAIARLHGGET  418
             +  +   + + VAN G+   +A+KLF  FWRGDNA  T+G  LGL+L +AIA LHGG +
Sbjct  374  ESAYDDNVAEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLSLVNAIALLHGGSA  433

Query  419  TVDHEAGWNRFILRFPAA  436
            +       N F +R+P +
Sbjct  434  SYRYADEHNIFSVRLPDS  451

115) CSSP291_19160 in NC_020260


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  305 bits (1144),  Expect = 2e-84, Method: Compositional matrix adjust.
 Identities = 219/436 (51%), Positives = 322/436 (74%), Gaps = 2/436 (0%)

Query  18   VAFACGVTGVSLYRSLSAELLWRDDQTLLNRASQLRQLLTDGAEPRQLPLYFNRMLDTRQ  77
            + +AC   + +LY +LS EL  RDD TL+NRA+Q++QLL DGA P +L+LYFNRM+DT+Q
Sbjct  18   LILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGARPENLALYFNRMVDTKQ  77

Query  78   DLLMIKRAEGETLVNINQAGVALPTLAPVPPGRGVNEQALHRWQRPDGVSISALALTAND  137
            D+L+I  A G+  V IN++G++   +  +P ++ +  ++L R Q  +G  ++A+ + A  
Sbjct  78   DILLIHSATGHN-VAINHSGIPDQRFNEIPLAKNITRETLFR-QAVQGTELTAVRVNARS  135

Query  138  ARGPLIITVARVAQERAQMLAQYRRESLIVCllatlaaallSPWlirrglraiarlSEAT  197
            + +PL +T+A +A ER QML+QYRR+SL++ L+A L  + LSP +IR +LRAI+ LS  T
Sbjct  136  GDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLVIRNALRAITSLSRLT  195

Query  198  ARTGSETLQQPLSLETLPRELLPLGEALNTMRHRLAEDFARLTRFADDLAHELRTPVNIL  257
            A ++S TL+ P + ++LP EL PLG+ALNTMR++L++DF RL +FADDLAHELRTPVNIL
Sbjct  196  AASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQFADDLAHELRTPVNIL  255

Query  258  LGQNQVVLQRPRSVQEYQSLLAGNIEELEQMTRLIENILFLARADHQNIALKRERLALEP  317
            LG+NQV+L + RS +EYQ  L +NIEELE ++RL ENILFLARA+HQNIA+K++ ++L++
Sbjct  256  LGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAEHQNIAVKKQPVSLNA  315

Query  318  FIHQLTDFLEPLAEEQAITFNVQAQGDIFADrlllqraltnlltnalRHAPAGSEVRITA  377
            +++++ D+L PLAEE+ I F  Q QG + AD +LLQR L+NLLTNA+R +   + +RI +
Sbjct  316  LVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTNAIRYSDENAVIRIES  375

Query  378  VQEAGETVLSVANQGAPIAEAEKLFLRFWRGDNARHTPGTGLGLALTEAIARLHGGETAV  437
              +   + + VAN G+  A+A+KLF RFWRGDNA HT+G  LGL+L +AIA LHGG ++ 
Sbjct  376  AYDDNVAEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLSLVNAIALLHGGSASY  435

Query  438  DHGAGWNRFRLRFPAA  453
              +   N F +R+P +
Sbjct  436  RYADEHNIFSVRLPDS  451

116) ESA_04135 in NC_009778


> AF060858|3|G3|3511130|AAC33720.1|Salmonella_enterica_subsp._enterica_serovar_Dublin_2229|+|1328..2692|copS|-|histidine 
kinase
Length=454

 Score =  303 bits (1135),  Expect = 1e-83, Method: Compositional matrix adjust.
 Identities = 217/436 (50%), Positives = 321/436 (74%), Gaps = 2/436 (0%)

Query  18   VAFACGVTGVSLYRSLSAELLWRDDQTLLNRASQLRQLLTDGAEPRQLPLYFNRMLDTRQ  77
            + +AC   + +LY +LS EL  RDD TL+NRA+Q++QLL DGA P +L+LYFNRM+DT+Q
Sbjct  18   LILACTGISWTLYNALSKELTYRDDMTLINRAAQMQQLLLDGARPENLALYFNRMVDTKQ  77

Query  78   DLLMIKRAEGETLVNINQAGVALPTLAPVPPGRGVNEQALHRWQRPDGVSISALALTASD  137
            D+L+I  A G+  V IN++G++   +  +P ++ +  ++L R Q  +G  ++A+ + A  
Sbjct  78   DILLIHSATGHN-VAINHSGIPDQRFNEIPLAKNITRETLFR-QAVQGTELTAVRVNARS  135

Query  138  ARGPLIITVARVAQERAQMLAQYRRESLMVCllatlaaallSPWlirrglraiarlSEAT  197
            + +PL +T+A +A ER QML+QYRR+SL++ L+A L  + LSP +IR +LRAI+ LS  T
Sbjct  136  GDDPLTLTIASLATERRQMLTQYRRNSLLISLIAILVCSALSPLVIRNALRAITSLSRLT  195

Query  198  ARTGSETLQQPLSLETLPRELLPLGEALNTMRHRLAEDFAQLTRFADDLAHELRTPVNIL  257
            A ++S TL+ P + ++LP EL PLG+ALNTMR++L++DF +L +FADDLAHELRTPVNIL
Sbjct  196  AASDSGTLRPPKAEQALPVELRPLGQALNTMRQKLSDDFERLNQFADDLAHELRTPVNIL  255

Query  258  LGQNQVALQRPRSVQEYQSLLAGNIEELEQMTRLIENILFLARADHQNIALKRERLALEP  317
            LG+NQV L + RS +EYQ  L +NIEELE ++RL ENILFLARA+HQNIA+K++ ++L++
Sbjct  256  LGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAEHQNIAVKKQPVSLNA  315

Query  318  FIHQLTDFLEPLAEEQEITFNVQAHGNIFADrlllqraltnlltnalRHAPAGSEVRITA  377
            +++++ D+L PLAEE+ I F  Q +G + AD +LLQR L+NLLTNA+R +   + +RI +
Sbjct  316  LVENMLDYLSPLAEEKRICFINQCQGTVWADEILLQRVLSNLLTNAIRYSDENAVIRIES  375

Query  378  VQESGETVLSVANQGAPIAEAEKLFQRFWRGDNARHTPGTGLGLALTEAIARLHGGYTAV  437
              +   + + VAN G+  A+A+KLF+RFWRGDNA HT+G  LGL+L +AIA LHGG ++ 
Sbjct  376  AYDDNVAEIRVANPGSHPADADKLFRRFWRGDNACHTAGFPLGLSLVNAIALLHGGSASY  435

Query  438  DHEAGWNRFRLRFPAA  453
                  N F +R+P +
Sbjct  436  RYADEHNIFSVRLPDS  451