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Homologs of cap1I gene of U10927

664

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) capI
( YP_002635437.1 )

capsular polysaccharide biosynthesis protein Cap I

NC_012121
(Staphylococcus carnosus TM300)

3e-135

2) capI
( YP_002560077.1 )

capsular polysaccharide biosynthesis protein CapI

NC_011999
(Macrococcus caseolyticus JCSC5402)

1e-123

3) GWCH70_3260
( YP_002951169.1 )

NAD-dependent epimerase/dehydratase

NC_012793
(Geobacillus sp. WCH70)

5e-117

4) capI
( YP_007325114.1 )

Protein CapI

NC_020055
(Desulfovibrio hydrothermalis DSM 14728)

2e-108

5) Maqu_1687
( YP_958958.1 )

NAD-dependent epimerase/dehydratase

NC_008740
(Marinobacter aquaeolei VT8)

2e-108

6) uge
( YP_002137680.1 )

UDP-galacturonate 4-epimerase

NC_011146
(Geobacter bemidjiensis Bem)

1e-107

7) uge
( YP_006891148.1 )

UDP-galacturonate 4-epimerase

NC_017454
(Geobacter sulfurreducens KN400)

1e-107

8) uge
( NP_953290.1 )

UDP-galacturonate 4-epimerase

NC_002939
(Geobacter sulfurreducens PCA)

1e-107

9) HP15_2023
( YP_005885715.1 )

UDP-glucuronic acid epimerase

NC_017506
(Marinobacter adhaerens HP15)

3e-107

10) Bsel_3033
( YP_003701080.1 )

NAD-dependent epimerase/dehydratase

NC_014219
(Bacillus selenitireducens MLS10)

3e-107

11) Desal_3834
( YP_002993418.1 )

NAD-dependent epimerase/dehydratase

NC_012881
(Desulfovibrio salexigens DSM 2638)

4e-107

12) uge
( YP_006721291.1 )

UDP-galacturonate 4-epimerase

NC_007517
(Geobacter metallireducens GS-15)

5e-107

13) GM21_3403
( YP_003023185.1 )

NAD-dependent epimerase/dehydratase

NC_012918
(Geobacter sp. M21)

3e-106

14) Dret_2499
( YP_003199359.1 )

NAD-dependent epimerase/dehydratase

NC_013223
(Desulfohalobium retbaense DSM 5692)

3e-106

15) lspL
( YP_002786792.1 )

UDP-glucuronate 5-epimerase

NC_012526
(Deinococcus deserti VCD115)

1e-105

16) Plabr_0533
( YP_004268182.1 )

UDP-glucuronate 5'-epimerase

NC_015174
(Planctomyces brasiliensis DSM 5305)

6e-106

17) AXY_19990
( YP_006845893.1 )

UDP-galacturonate 4-epimerase

NC_018704
(Amphibacillus xylanus NBRC 15112)

1e-105

18) Alvin_2214
( YP_003444165.1 )

NAD-dependent epimerase/dehydratase

NC_013851
(Allochromatium vinosum DSM 180)

3e-105

19) Nhal_0564
( YP_003526135.1 )

NAD-dependent epimerase/dehydratase

NC_013960
(Nitrosococcus halophilus Nc 4)

4e-105

20) Tgr7_2111
( YP_002514178.1 )

NAD-dependent epimerase/dehydratase

NC_011901
(Thioalkalivibrio sulfidophilus HL-EbGR7)

7e-105

21) BH3709
( NP_244576.1 )

nucleotide sugar epimerase

NC_002570
(Bacillus halodurans C-125)

9e-105

22) Mmc1_2116
( YP_866023.1 )

NAD-dependent epimerase/dehydratase

NC_008576
(Magnetococcus marinus MC-1)

1e-104

23) TK90_0618
( YP_003459869.1 )

NAD-dependent epimerase/dehydratase

NC_013889
(Thioalkalivibrio sp. K90mix)

9e-105

24) SYN_01112
( YP_460463.1 )

UDP-N-acetylglucosamine 4-epimerase

NC_007759
(Syntrophus aciditrophicus SB)

2e-104

25) Cri9333_3498
( YP_007143833.1 )

UDP-glucuronate 4-epimerase

NC_019753
(Crinalium epipsammum PCC 9333)

2e-104

26) MC28_E057
( YP_006815555.1 )

glucose epimerase

NC_018687
(Bacillus thuringiensis MC28)

3e-104

27) WCFX
( NP_906298.1 )

UDP-glucuronic acid epimerase

NC_005090
(Wolinella succinogenes DSM 1740)

4e-104

28) ST548_p7874
( YP_007386724.1 )

dTDP-glucose 4,6-dehydratase

NC_020181
(Enterobacter aerogenes EA1509E)

4e-104

29) GM18_0750
( YP_004197507.1 )

NAD-dependent epimerase/dehydratase

NC_014973
(Geobacter sp. M18)

6e-104

30) MCA2449
( YP_114863.1 )

capsular polysaccharide biosynthesis protein I

NC_002977
(Methylococcus capsulatus Bath)

1e-103

31) Ent638_2640
( YP_001177358.1 )

NAD-dependent epimerase/dehydratase

NC_009436
(Enterobacter sp. 638)

1e-103

32) Cag_1182
( YP_379487.1 )

capsular polysaccharide biosynthesis protein I

NC_007514
(Chlorobium chlorochromatii CaD3)

9e-104

33) Sde_0618
( YP_526092.1 )

NAD-dependent epimerase/dehydratase

NC_007912
(Saccharophagus degradans 2-40)

2e-103

34) Sulba_1879
( YP_006404734.1 )

nucleoside-diphosphate-sugar epimerase

NC_018002
(Sulfurospirillum barnesii SES-3)

4e-103

35) TEH_04020
( YP_004885893.1 )

UDP-galacturonate 4-epimerase

NC_016052
(Tetragenococcus halophilus NBRC 12172)

5e-103

36) Nitsa_1999
( YP_004168990.1 )

NAD-dependent epimerase/dehydratase

NC_014935
(Nitratifractor salsuginis DSM 16511)

1e-102

37) XBJ1_2433
( YP_003468325.1 )

epimerase

NC_013892
(Xenorhabdus bovienii SS-2004)

1e-102

38) Halsa_0060
( YP_003993910.1 )

NAD-dependent epimerase/dehydratase

NC_014654
(Halanaerobium hydrogeniformans sapolanicus)

6e-103

39) Cvib_1219
( YP_001130733.1 )

NAD-dependent epimerase/dehydratase

NC_009337
(Chlorobium phaeovibrioides DSM 265)

6e-103

40) capI
( YP_006558647.1 )

protein CapI

NC_018268
(Marinobacter sp. BSs20148)

7e-103

41) uge
( YP_006717193.1 )

UDP-galacturonate 4-epimerase

NC_007498
(Pelobacter carbinolicus DSM 2380)

8e-103

42) uge
( YP_007990583.1 )

Uridine diphosphate galacturonate 4-epimerase

NC_021232
(Klebsiella pneumoniae SB3432)

9e-103

43) Desac_0239
( YP_004369312.1 )

UDP-glucuronate 5'-epimerase

NC_015388
(Desulfobacca acetoxidans DSM 11109)

2e-102

44) Dvul_0038
( YP_965489.1 )

NAD-dependent epimerase/dehydratase

NC_008751
(Desulfovibrio vulgaris DP4)

2e-102

45) TepRe1_1767
( YP_004461205.1 )

UDP-glucuronate 5'-epimerase

NC_015519
(Tepidanaerobacter acetatoxydans Re1)

3e-102

46) capI
( YP_007272695.1 )

Protein CapI

NC_019954
(Tepidanaerobacter acetatoxydans Re1)

3e-102

47) Metme_1267
( YP_004512193.1 )

UDP-glucuronate 5'-epimerase

NC_015572
(Methylomonas methanica MC09)

3e-102

48) DVU3356
( YP_012565.1 )

NAD-dependent epimerase/dehydratase

NC_002937
(Desulfovibrio vulgaris Hildenborough)

3e-102

49) Deval_3097
( YP_005703876.1 )

NAD-dependent epimerase/dehydratase

NC_017310
(Desulfovibrio vulgaris RCH1)

3e-102

50) Exig_2625
( YP_001815090.1 )

NAD-dependent epimerase/dehydratase

NC_010556
(Exiguobacterium sibiricum 255-15)

3e-102

51) Sfum_0179
( YP_844316.1 )

NAD-dependent epimerase/dehydratase

NC_008554
(Syntrophobacter fumaroxidans MPOB)

3e-102

52) capI [H]
( YP_007215252.1 )

UDP-glucose 4-epimerase

NC_019902
(Thioalkalivibrio nitratireducens DSM 14787)

3e-102

53) Hden_3127
( YP_003757243.1 )

NAD-dependent epimerase/dehydratase

NC_014313
(Hyphomicrobium denitrificans ATCC 51888)

5e-102

54) TK90_1835
( YP_003461062.1 )

NAD-dependent epimerase/dehydratase

NC_013889
(Thioalkalivibrio sp. K90mix)

6e-102

55) CTU_23870
( YP_003210750.1 )

hypothetical protein

NC_013282
(Cronobacter turicensis z3032)

6e-102

56) Nwat_0479
( YP_003759765.1 )

NAD-dependent epimerase/dehydratase

NC_014315
(Nitrosococcus watsonii C-113)

7e-102

57) Ppha_1748
( YP_002018598.1 )

NAD-dependent epimerase/dehydratase

NC_011060
(Pelodictyon phaeoclathratiforme BU-1)

7e-102

58) lpsL
( YP_003799765.1 )

UDP-glucuronate 5'-epimerase

NC_014355
(Candidatus Nitrospira defluvii )

9e-102

59) Riv7116_2164
( YP_007055240.1 )

nucleoside-diphosphate-sugar epimerase

NC_019678
(Rivularia sp. PCC 7116)

1e-101

60) capI
( YP_006761205.1 )

biosynthesis protein of type I capsular polysaccharide CapI

NC_018645
(Desulfobacula toluolica Tol2)

2e-101

61) ECBG_00498
( YP_007752364.1 )

hypothetical protein

NC_020995
(Enterococcus casseliflavus EC20)

2e-101

62) AMEC673_13375
( YP_006799738.1 )

capsular polysaccharide biosynthesis protein I

NC_018678
(Alteromonas macleodii English Channel 673)

2e-101

63) Entas_2795
( YP_004829307.1 )

NAD-dependent epimerase/dehydratase

NC_015968
(Enterobacter asburiae LF7a)

2e-101

64) GAU_2706
( YP_002762218.1 )

NAD-dependent epimerase/dehydratase family protein

NC_012489
(Gemmatimonas aurantiaca T-27)

2e-101

65) Spro_2707
( YP_001478936.1 )

NAD-dependent epimerase/dehydratase

NC_009832
(Serratia proteamaculans 568)

2e-101

66) wcvA
( NP_720202.1 )

UDP-glucuronate 4-epimerase WcvA

NC_004347
(Shewanella oneidensis MR-1)

2e-101

67) Shewmr7_3979
( YP_740013.1 )

UDP-glucuronate 5'-epimerase

NC_008322
(Shewanella sp. MR-7)

2e-101

68) I633_14475
( YP_008193345.1 )

capsular polysaccharide biosynthesis protein I

NC_021716
(Alteromonas macleodii English Channel 615)

3e-101

69) CJA_3427
( YP_001983881.1 )

NAD dependent epimerase/dehydratase family superfamily

NC_010995
(Cellvibrio japonicus Ueda107)

3e-101

70) capI
( YP_004917178.1 )

protein CapI

NC_016112
(Methylomicrobium alcaliphilum 20Z)

4e-101

71) REMIM1_CH00771
( YP_008363550.1 )

NAD-dependent epimerase/dehydratase family protein

NC_021905
(Rhizobium etli Mim1)

4e-101

72) SbBS512_E1204
( YP_001879849.1 )

NAD dependent epimerase/dehydratase family

NC_010658
(Shigella boydii CDC 3083-94)

4e-101

73) ENC_41400
( YP_007847405.1 )

Nucleoside-diphosphate-sugar epimerases

NC_021046
(Enterobacter cloacae NCTC 9394)

4e-101

74) ES15_1762
( YP_006342846.1 )

NAD-dependent epimerase/dehydratase

NC_017933
(Cronobacter sakazakii ES15)

4e-101

75) Shewmr4_3886
( YP_736006.1 )

UDP-glucuronate 5'-epimerase

NC_008321
(Shewanella sp. MR-4)

4e-101

76) DND132_2271
( YP_005168278.1 )

NAD-dependent epimerase/dehydratase

NC_016803
(Desulfovibrio desulfuricans ND132)

5e-101

77) AMBAS45_13595
( YP_006803663.1 )

capsular polysaccharide biosynthesis protein I

NC_018679
(Alteromonas macleodii Balearic Sea AD45)

5e-101

78) KPHS_35510
( YP_005227851.1 )

uridine diphosphate galacturonate 4-epimerase

NC_016845
(Klebsiella pneumoniae HS11286)

5e-101

79) M495_13565
( YP_008230655.1 )

hypothetical protein

NC_021741
(Serratia liquefaciens ATCC 27592)

5e-101

80) Pjdr2_0360
( YP_003009127.1 )

NAD-dependent epimerase/dehydratase

NC_012914
(Paenibacillus sp. JDR-2)

6e-101

81) M5M_08920
( YP_006916701.1 )

NAD dependent epimerase/dehydratase family superfamily protein

NC_018868
(Simiduia agarivorans SA1)

6e-101

82) KPK_1672
( YP_002237523.1 )

uridine diphosphate galacturonate 4-epimerase

NC_011283
(Klebsiella pneumoniae 342)

6e-101

83) Entcl_1666
( YP_003941210.1 )

NAD-dependent epimerase/dehydratase

NC_014618
(Enterobacter cloacae SCF1)

7e-101

84) amad1_13975
( YP_006977648.1 )

capsular polysaccharide biosynthesis protein I

NC_019393
(Alteromonas macleodii AltDE1)

7e-101

85) I636_13580
( YP_008184680.1 )

capsular polysaccharide biosynthesis protein I

NC_021714
(Alteromonas macleodii Ionian Sea UM4b)

7e-101

86) I635_13950
( YP_008180707.1 )

capsular polysaccharide biosynthesis protein I

NC_021713
(Alteromonas macleodii Ionian Sea UM7)

7e-101

87) CFF8240_1396
( YP_892537.1 )

WbnF

NC_008599
(Campylobacter fetus 82-40)

7e-101

88) Daes_3345
( YP_004123079.1 )

NAD-dependent epimerase/dehydratase

NC_014844
(Desulfovibrio aespoeensis Aspo-2)

1e-100

89) TOL_1903
( YP_007682557.1 )

UDP-galacturonate 4-epimerase

NC_020888
(Thalassolituus oleivorans MIL-1)

1e-100

90) Noc_2638
( YP_344621.1 )

UDP-glucuronate 5'-epimerase

NC_007484
(Nitrosococcus oceani ATCC 19707)

1e-100

91) MASE_13060
( YP_006748678.1 )

capsular polysaccharide biosynthesis protein I

NC_018632
(Alteromonas macleodii ATCC 27126)

1e-100

92) ESA_01535
( YP_001437626.1 )

hypothetical protein

NC_009778
(Cronobacter sakazakii ATCC BAA-894)

1e-100

93) CSSP291_07415
( YP_007440367.1 )

NAD-dependent epimerase/dehydratase

NC_020260
(Cronobacter sakazakii Sp291)

1e-100

94) wcfX
( YP_003931174.1 )

nucleotide-diphosphate sugar epimerase

NC_014562
(Pantoea vagans C9-1)

1e-100

95) EAE_23435
( YP_004594865.1 )

uridine diphosphate galacturonate 4-epimerase

NC_015663
(Enterobacter aerogenes KCTC 2190)

8e-101

96) N559_1766
( YP_008424782.1 )

uridine diphosphate galacturonate 4-epimerase

NC_022082
(Klebsiella pneumoniae JM45)

8e-101

97) Clim_1588
( YP_001943612.1 )

NAD-dependent epimerase/dehydratase

NC_010803
(Chlorobium limicola DSM 245)

2e-100

98) Cpha266_1741
( YP_912182.1 )

NAD-dependent epimerase/dehydratase

NC_008639
(Chlorobium phaeobacteroides DSM 266)

2e-100

99) Ftrac_2665
( YP_004054751.1 )

nad-dependent epimerase/dehydratase

NC_014759
(Marivirga tractuosa DSM 4126)

2e-100

100) Paes_1510
( YP_002016177.1 )

NAD-dependent epimerase/dehydratase

NC_011059
(Prosthecochloris aestuarii DSM 271)

2e-100

101) MADE_1013075
( YP_004427747.1 )

NAD dependent epimerase/dehydratase

NC_011138
(Alteromonas macleodii Deep ecotype)

2e-100

102) rfbB
( YP_004952803.1 )

RfbB protein

NC_016514
(Enterobacter cloacae EcWSU1)

2e-100

103) A79E_1612
( YP_006635424.1 )

dTDP-glucose 4,6-dehydratase

NC_018522
(Klebsiella pneumoniae 1084)

2e-100

104) uge
( YP_002920349.1 )

uridine diphosphate galacturonate 4-epimerase

NC_012731
(Klebsiella pneumoniae NTUH-K2044)

2e-100

105) uge
( YP_001336140.1 )

uridine diphosphate galacturonate 4-epimerase

NC_009648
(Klebsiella pneumoniae subsp. pneumoniae MGH 78578)

2e-100

106) Kvar_1564
( YP_003438501.1 )

NAD-dependent epimerase/dehydratase

NC_013850
(Klebsiella variicola At-22)

2e-100

107) I607_13205
( YP_008172684.1 )

capsular polysaccharide biosynthesis protein I

NC_021710
(Alteromonas macleodii Ionian Sea U4)

3e-100

108) I876_13590
( YP_008197100.1 )

capsular polysaccharide biosynthesis protein I

NC_021717
(Alteromonas macleodii Ionian Sea U7)

3e-100

109) I634_13450
( YP_008176787.1 )

capsular polysaccharide biosynthesis protein I

NC_021712
(Alteromonas macleodii Ionian Sea U8)

3e-100

110) SAR116_1941
( YP_003552268.1 )

nucleotide sugar epimerase

NC_014010
(Candidatus Puniceispirillum marinum IMCC1322)

3e-100

111) H650_05960
( YP_008107031.1 )

hypothetical protein

NC_021500
(Enterobacter sp. R4-368)

3e-100

112) SOD_c25480
( YP_008138728.1 )

putative 37.6 kDa protein in cld 5'region

NC_021591
(Serratia odorifera 4Rx13)

3e-100

113) SMWW4_v1c27200
( YP_007406534.1 )

NAD-dependent epimerase/dehydratase

NC_020211
(Serratia marcescens WW4)

3e-100

114) Plut_1400
( YP_375302.1 )

capsular polysaccharide biosynthesis protein I

NC_007512
(Chlorobium luteolum DSM 273)

3e-100

115) UWK_02513
( YP_007468702.1 )

nucleoside-diphosphate-sugar epimerase

NC_020304
(Desulfocapsa sulfexigens DSM 10523)

4e-100

116) LAW_00599
( YP_007365682.1 )

NAD dependent epimerase/dehydratase

NC_020127
(Lawsonia intracellularis N343)

4e-100

117) LI0580
( YP_594955.1 )

nucleoside-diphosphate-sugar epimerases

NC_008011
(Lawsonia intracellularis PHE/MN1-00)

4e-100

118) AMBLS11_13075
( YP_006825641.1 )

capsular polysaccharide biosynthesis protein I

NC_018692
(Alteromonas macleodii Black Sea 11)

4e-100

119) Shewana3_4089
( YP_871712.1 )

NAD-dependent epimerase/dehydratase

NC_008577
(Shewanella sp. ANA-3)

4e-100

120) CCC13826_0468
( YP_001467309.1 )

glutamyl-tRNA synthetase (glutamate--tRNA ligase; GluRS)

NC_009802
(Campylobacter concisus 13826)

5e-100

121) KPN2242_15530
( YP_005955561.1 )

uridine diphosphate galacturonate 4-epimerase

NC_017540
(Klebsiella pneumoniae KCTC 2242)

5e-100

122) uge
( YP_007990584.1 )

uridine diphosphate galacturonate 4-epimerase

NC_021232
(Klebsiella pneumoniae SB3432)

5e-100

123) Pat9b_2181
( YP_004116049.1 )

NAD-dependent epimerase/dehydratase

NC_014837
(Pantoea sp. At-9b)

5e-100

124) SerAS9_2738
( YP_004506120.1 )

UDP-glucuronate 5'-epimerase

NC_015567
(Serratia plymuthica AS9)

5e-100

125) SerAS12_2739
( YP_004501167.1 )

UDP-glucuronate 5'-epimerase

NC_015566
(Serratia sp. AS12)

5e-100

126) SerAS13_2740
( YP_006025581.1 )

UDP-glucuronate 5'-epimerase

NC_017573
(Serratia sp. AS13)

5e-100

127) Abu_0660
( YP_001489594.1 )

NAD-dependent epimerase/dehydratase

NC_009850
(Arcobacter butzleri RM4018)

6e-100

128) M621_13905
( YP_008159578.1 )

hypothetical protein

NC_021659
(Serratia plymuthica S13)

1e-99

129) SG1369
( YP_455049.1 )

nucleotide sugar epimerase

NC_007712
(Sodalis glossinidius morsitans)

1e-99

130) Dde_0033
( YP_386529.2 )

UDP-N-acetylglucosamine 4-epimerase

NC_007519
(Desulfovibrio alaskensis G20)

7e-100

131) HCH_04902
( YP_436018.1 )

nucleoside-diphosphate-sugar epimerase

NC_007645
(Hahella chejuensis KCTC 2396)

7e-100

132) Arnit_2572
( YP_003656727.1 )

NAD-dependent epimerase/dehydratase

NC_014166
(Arcobacter nitrofigilis DSM 7299)

8e-100

133) Glaag_3197
( YP_004435399.1 )

NAD-dependent epimerase/dehydratase

NC_015497
(Glaciecola sp. 4H-3-7+YE-5)

8e-100

134) Daro_3930
( YP_287128.1 )

NAD-dependent epimerase/dehydratase

NC_007298
(Dechloromonas aromatica RCB)

1e-99

135) D781_2450
( YP_007344900.1 )

nucleoside-diphosphate-sugar epimerase

NC_020064
(Serratia marcescens FGI94)

1e-99

136) DGI_0864
( YP_008589927.1 )

putative NAD-dependent epimerase/dehydratase

NC_022444
(Desulfovibrio gigas ATCC 19364)

1e-99

137) MARHY1608
( YP_005429508.1 )

UDP-glucose 4-epimerase

NC_017067
(Marinobacter hydrocarbonoclasticus ATCC 49840)

2e-99

138) Dole_2324
( YP_001530205.1 )

NAD-dependent epimerase/dehydratase

NC_009943
(Desulfococcus oleovorans Hxd3)

2e-99

139) wcaG
( YP_157918.1 )

nucleoside-diphosphate-sugar epimerase

NC_006513
(Aromatoleum aromaticum EbN1)

2e-99

140) Eab7_2411
( YP_006792113.1 )

NAD-dependent epimerase/dehydratase

NC_018665
(Exiguobacterium antarcticum Eab7)

2e-99

141) Exig_2571
( YP_001815037.1 )

NAD-dependent epimerase/dehydratase

NC_010556
(Exiguobacterium sibiricum 255-15)

2e-99

142) RORB6_02135
( YP_007872677.1 )

dTDP-glucose 4,6-dehydratase

NC_021066
(Raoultella ornithinolytica B6)

2e-99

143) PAGR_g2001
( YP_005992736.1 )

DTDP-glucose 4 6-dehydratase RfbB

NC_017554
(Pantoea ananatis PA13)

2e-99

144) DaAHT2_1792
( YP_003691102.1 )

NAD-dependent epimerase/dehydratase

NC_014216
(Desulfurivibrio alkaliphilus AHT2)

3e-99

145) DP2716
( YP_066452.1 )

nucleotide sugar epimerase

NC_006138
(Desulfotalea psychrophila LSv54)

3e-99

146) KOX_25105
( YP_005020975.1 )

uridine diphosphate galacturonate 4-epimerase

NC_016612
(Klebsiella oxytoca KCTC 1686)

3e-99

147) Cphamn1_0966
( YP_001959391.1 )

NAD-dependent epimerase/dehydratase

NC_010831
(Chlorobium phaeobacteroides BS1)

3e-99

148) Thivi_2513
( YP_006414576.1 )

nucleoside-diphosphate-sugar epimerase

NC_018012
(Thiocystis violascens DSM 198)

3e-99

149) NT01EI_1313
( YP_002932745.1 )

UDP-glucuronate 5'-epimerase, putative

NC_012779
(Edwardsiella ictaluri 93-146)

4e-99

150) PSE_3208
( YP_005081738.1 )

udp-glucuronic acid epimerase

NC_016642
(Pseudovibrio sp. FO-BEG1)

4e-99

151) Shal_1502
( YP_001673727.1 )

NAD-dependent epimerase/dehydratase

NC_010334
(Shewanella halifaxensis HAW-EB4)

5e-99

152) rfbB
( YP_003520387.1 )

RfbB

NC_013956
(Pantoea ananatis LMG 20103)

5e-99

153) rfbB
( YP_005934290.1 )

DTDP-glucose 4 6-dehydratase RfbB

NC_017531
(Pantoea ananatis AJ13355)

5e-99

154) rfbB
( YP_005195508.1 )

nucleotide-diphosphate sugar epimerase

NC_016816
(Pantoea ananatis LMG 5342)

5e-99

155) NIS_1416
( YP_001356880.1 )

NAD-dependent epimerase/dehydratase

NC_009662
(Nitratiruptor sp. SB155-2)

6e-99

156) A225_3875
( YP_006499568.1 )

dTDP-glucose 4,6-dehydratase

NC_018106
(Klebsiella oxytoca E718)

6e-99

157) wbnF
( YP_002152874.1 )

nucleotide sugar epimerase

NC_010554
(Proteus mirabilis HI4320)

6e-99

158) Tmz1t_3455
( YP_002890426.1 )

NAD-dependent epimerase/dehydratase

NC_011662
(Thauera sp. MZ1T)

6e-99

159) wbnF
( YP_932356.1 )

putative nucleotide sugar epimerase

NC_008702
(Azoarcus sp. BH72)

7e-99

160) Spea_1419
( YP_001501279.1 )

NAD-dependent epimerase/dehydratase

NC_009901
(Shewanella pealeana ATCC 700345)

7e-99

161) AHA_2881
( YP_857385.1 )

nucleotide sugar epimerase

NC_008570
(Aeromonas hydrophila ATCC 7966)

7e-99

162) wbnF
( YP_008398073.1 )

putative nucleotide sugar epimerase

NC_022000
(Proteus mirabilis BB2000)

8e-99

163) wbnF
( YP_002151220.1 )

nucleotide sugar epimerase

NC_010554
(Proteus mirabilis HI4320)

8e-99

164) Cyast_0712
( YP_007164335.1 )

NAD-dependent epimerase/dehydratase

NC_019778
(Cyanobacterium stanieri PCC 7202)

1e-98

165) EAT1b_1377
( YP_002885749.1 )

NAD-dependent epimerase/dehydratase

NC_012673
(Exiguobacterium sp. AT1b)

1e-98

166) C427_4161
( YP_007545614.1 )

NAD-dependent epimerase/dehydratase

NC_020514
(Glaciecola psychrophila 170)

1e-98

167) wbnF
( YP_003040863.1 )

Nucleotide sugar epimerase

NC_012962
(Photorhabdus asymbiotica ATCC 43949)

1e-98

168) wbnF
( YP_003538995.1 )

uridine diphosphate galacturonate 4-epimerase

NC_013971
(Erwinia amylovora ATCC 49946)

1e-98

169) topB1
( YP_003531318.1 )

DNA topoisomerase III

NC_013961
(Erwinia amylovora CFBP1430)

1e-98

170) Gura_2598
( YP_001231348.1 )

NAD-dependent epimerase/dehydratase

NC_009483
(Geobacter uraniireducens Rf4)

2e-98

171) Dbac_3039
( YP_003159530.1 )

NAD-dependent epimerase/dehydratase

NC_013173
(Desulfomicrobium baculatum DSM 4028)

2e-98

172) Sbal175_4257
( YP_006022780.1 )

UDP-glucuronate 5'-epimerase

NC_017571
(Shewanella baltica BA175)

2e-98

173) Sbal117_0070
( YP_006035369.1 )

UDP-glucuronate 5'-epimerase

NC_017579
(Shewanella baltica OS117)

2e-98

174) Sbal_0070
( YP_001048475.1 )

NAD-dependent epimerase/dehydratase

NC_009052
(Shewanella baltica OS155)

2e-98

175) CbuK_0712
( YP_002305113.1 )

UDP-N-acetylglucosamine 4-epimerase

NC_011528
(Coxiella burnetii CbuK_Q154)

2e-98

176) CBUD_0909
( YP_001424292.2 )

UDP-N-acetylglucosamine 4-epimerase

NC_009727
(Coxiella burnetii Dugway 5J108-111)

2e-98

177) GC56T3_3299
( YP_003672790.1 )

NAD-dependent epimerase/dehydratase

NC_014206
(Geobacillus sp. C56-T3)

3e-98

178) Despr_2467
( YP_004195896.1 )

NAD-dependent epimerase/dehydratase

NC_014972
(Desulfobulbus propionicus DSM 2032)

3e-98

179) Plim_3735
( YP_003631746.1 )

NAD-dependent epimerase/dehydratase

NC_014148
(Planctomyces limnophilus DSM 3776)

3e-98

180) COXBURSA331_A1106
( YP_001596860.1 )

capsular polysaccharide biosynthesis protein

NC_010117
(Coxiella burnetii RSA 331)

3e-98

181) CBU_0844
( NP_819864.2 )

capsular polysaccharide biosynthesis protein

NC_002971
(Coxiella burnetii RSA 493)

3e-98

182) DSC_06810
( YP_004930054.1 )

Capsular polysaccharide biosynthesis protein I

NC_016147
(Pseudoxanthomonas spadix BD-a59)

3e-98

183) Ser39006_1917
( YP_008522299.1 )

UDP-glucuronate 5'-epimerase

NC_022268
(Serratia sp. ATCC 39006)

3e-98

184) B1NLA3E_05000
( YP_007909271.1 )

NAD-dependent epimerase/dehydratase

NC_021171
(Bacillus sp. 1NLA3E)

4e-98

185) Cyan7425_3805
( YP_002484485.1 )

NAD-dependent epimerase/dehydratase

NC_011884
(Cyanothece sp. PCC 7425)

4e-98

186) Sbal223_4274
( YP_002360163.1 )

NAD-dependent epimerase/dehydratase

NC_011663
(Shewanella baltica OS223)

4e-98

187) Tola_2856
( YP_002894034.1 )

NAD-dependent epimerase/dehydratase

NC_012691
(Tolumonas auensis DSM 9187)

4e-98

188) OCA4_c26380
( YP_005951638.1 )

NAD-dependent epimerase/dehydratase family

NC_017538
(Oligotropha carboxidovorans OM4)

4e-98

189) OCA5_c26390
( YP_004633575.1 )

NAD-dependent epimerase/dehydratase family

NC_015684
(Oligotropha carboxidovorans OM5)

4e-98

190) OCAR_5337
( YP_002288334.1 )

UDP-glucuronate 5'-epimerase

NC_011386
(Oligotropha carboxidovorans OM5; ATCC 49405)

4e-98

191) Hneap_1011
( YP_003262894.1 )

NAD-dependent epimerase/dehydratase

NC_013422
(Halothiobacillus neapolitanus c2)

7e-98

192) Rfer_0656
( YP_521938.1 )

NAD-dependent epimerase/dehydratase

NC_007908
(Rhodoferax ferrireducens T118)

7e-98

193) CbuG_1157
( YP_002303636.1 )

UDP-N-acetylglucosamine 4-epimerase

NC_011527
(Coxiella burnetii CbuG_Q212)

7e-98

194) Cthe_0229
( YP_001036661.1 )

NAD-dependent epimerase/dehydratase

NC_009012
(Clostridium thermocellum ATCC 27405)

1e-97

195) Clo1313_1999
( YP_005688496.1 )

NAD-dependent epimerase/dehydratase

NC_017304
(Clostridium thermocellum DSM 1313)

1e-97

196) capI
( YP_007494600.1 )

Protein CapI

NC_020409
(Desulfovibrio piezophilus C1TLV30)

1e-97

197) Rahaq2_2030
( YP_005200031.1 )

nucleoside-diphosphate-sugar epimerase

NC_016818
(Rahnella aquatilis CIP 78.65)

1e-97

198) XNC1_2486
( YP_003712708.1 )

epimerase

NC_014228
(Xenorhabdus nematophila ATCC 19061)

1e-97

199) Sputw3181_0062
( YP_961469.1 )

NAD-dependent epimerase/dehydratase

NC_008750
(Shewanella sp. W3-18-1)

2e-97

200) ETAC_05730
( YP_007628631.1 )

putative nucleotide sugar epimerase

NC_020796
(Edwardsiella tarda C07-087)

9e-98

201) ECENHK_14545
( YP_006579378.1 )

NAD-dependent epimerase/dehydratase

NC_018405
(Enterobacter cloacae ENHKU01)

2e-97

202) Cpar_1802
( YP_001999394.1 )

NAD-dependent epimerase/dehydratase

NC_011027
(Chlorobaculum parvum NCIB 8327)

2e-97

203) HYPDE_38823
( YP_007915933.1 )

NAD-dependent epimerase/dehydratase

NC_021172
(Hyphomicrobium denitrificans 1NES1)

2e-97

204) wbnF
( YP_001907517.1 )

UDP-sugar epimerase

NC_010694
(Erwinia tasmaniensis Et1/99)

2e-97

205) Desaf_2415
( YP_005052398.1 )

UDP-glucuronate 5'-epimerase

NC_016629
(Desulfovibrio africanus Walvis Bay)

3e-97

206) Glo7428_2230
( YP_007127910.1 )

UDP-glucuronate 5'-epimerase

NC_019745
(Gloeocapsa sp. PCC 7428)

3e-97

207) A3UG_15070
( YP_006478442.1 )

NAD-dependent epimerase/dehydratase

NC_018079
(Enterobacter cloacae SDM)

4e-97

208) capD1
( YP_002604222.1 )

protein CapD1

NC_012108
(Desulfobacterium autotrophicum HRM2)

4e-97

209) Shew185_4329
( YP_001368506.1 )

NAD-dependent epimerase/dehydratase

NC_009665
(Shewanella baltica OS185)

4e-97

210) Metev_1252
( YP_003726915.1 )

NAD-dependent epimerase/dehydratase

NC_014253
(Methanohalobium evestigatum Z-7303)

7e-97

211) plu2499
( NP_929735.1 )

hypothetical protein

NC_005126
(Photorhabdus luminescens TTO1)

7e-97

212) GTCCBUS3UF5_37230
( YP_004984123.1 )

NAD-dependent epimerase/dehydratase

NC_016593
(Geobacillus thermoleovorans CCB_US3_UF5)

8e-97

213) AZKH_3775
( YP_007553035.1 )

NAD-dependent epimerase/dehydratase

NC_020516
(Azoarcus sp. KH32C)

8e-97

214) NAMH_1671
( YP_002608051.1 )

NAD-dependent epimerase/dehydratase family protein

NC_012115
(Nautilia profundicola AmH)

9e-97

215) SCD_n02914
( YP_008547745.1 )

nucleoside-diphosphate-sugar epimerase

NC_022357
(Sulfuricella denitrificans skB26)

9e-97

216) ECL_03348
( YP_003613831.1 )

NAD-dependent epimerase/dehydratase

NC_014121
(Enterobacter cloacae ATCC 13047)

2e-96

217) Dsui_0401
( YP_005026656.1 )

nucleoside-diphosphate-sugar epimerase

NC_016616
(Dechlorosoma suillum PS)

2e-96

218) Dd586_1252
( YP_003332841.1 )

NAD-dependent epimerase/dehydratase

NC_013592
(Dickeya dadantii Ech586)

2e-96

219) topB
( YP_005802522.1 )

DNA topoisomerase III

NC_017390
(Erwinia pyrifoliae DSM 12163)

2e-96

220) wbnF
( YP_002648656.1 )

UDP-sugar epimerase

NC_012214
(Erwinia pyrifoliae Ep1/96)

2e-96

221) wbnF
( YP_005819616.1 )

UDP-sugar epimerase

NC_017445
(Erwinia sp. Ejp617)

2e-96

222) Sbal195_4469
( YP_001556886.1 )

NAD-dependent epimerase/dehydratase

NC_009997
(Shewanella baltica OS195)

2e-96

223) Sbal678_4498
( YP_005275673.1 )

NAD-dependent epimerase/dehydratase

NC_016901
(Shewanella baltica OS678)

2e-96

224) Sput200_2689
( YP_006010563.1 )

NAD-dependent epimerase/dehydratase

NC_017566
(Shewanella putrefaciens 200)

2e-96

225) wbnF
( YP_003741782.1 )

UDP-sugar epimerase

NC_014306
(Erwinia billingiae Eb661)

3e-96

226) BBta_5621
( YP_001241485.1 )

nucleotide sugar epimerase

NC_009485
(Bradyrhizobium sp. BTAi1)

4e-96

227) Dd703_1201
( YP_002986827.1 )

NAD-dependent epimerase/dehydratase

NC_012880
(Dickeya dadantii Ech703)

1e-95

228) A359_01790
( YP_006588009.1 )

nucleoside-diphosphate-sugar epimerase

NC_018419
(secondary endosymbiont of Ctenarytaina eucalypti )

5e-96

229) DvMF_2048
( YP_002436459.1 )

NAD-dependent epimerase/dehydratase

NC_011769
(Desulfovibrio vulgaris Miyazaki F)

8e-96

230) Npun_F1376
( YP_001865027.1 )

NAD-dependent epimerase/dehydratase

NC_010628
(Nostoc punctiforme PCC 73102)

9e-96

231) S58_25330
( YP_007512126.1 )

putative nucleotide sugar epimerase

NC_020453
(Bradyrhizobium oligotrophicum S58)

9e-96

232) Riv7116_2469
( YP_007055526.1 )

nucleoside-diphosphate-sugar epimerase

NC_019678
(Rivularia sp. PCC 7116)

1e-95

233) Hhal_2179
( YP_001003745.1 )

NAD-dependent epimerase/dehydratase

NC_008789
(Halorhodospira halophila SL1)

2e-95

234) CT0230
( NP_661134.1 )

NAD-dependent epimerase/dehydratase

NC_002932
(Chlorobium tepidum TLS)

2e-95

235) AM1_0393
( YP_001514764.1 )

NAD-dependent epimerase/dehydratase family protein

NC_009925
(Acaryochloris marina MBIC11017)

2e-95

236) Glov_0479
( YP_001950727.1 )

NAD-dependent epimerase/dehydratase

NC_010814
(Geobacter lovleyi SZ)

2e-95

237) Sinac_5448
( YP_007205290.1 )

nucleoside-diphosphate-sugar epimerase

NC_019892
(Singulisphaera acidiphila DSM 18658)

2e-95

238) Bind_0796
( YP_001831935.1 )

NAD-dependent epimerase/dehydratase

NC_010581
(Beijerinckia indica ATCC 9039)

2e-95

239) ambt_03705
( YP_004466093.1 )

capsular polysaccharide biosynthesis protein I

NC_015554
(Alteromonas sp. SN2)

3e-95

240) Cal6303_2108
( YP_007137106.1 )

UDP-glucuronate 5'-epimerase

NC_019751
(Calothrix sp. PCC 6303)

3e-95

241) Thimo_3601
( YP_007245887.1 )

nucleoside-diphosphate-sugar epimerase

NC_019940
(Thioflavicoccus mobilis 8321)

3e-95

242) K734_02825
( YP_008034066.1 )

nucleoside-diphosphate-sugar epimerase

NC_021286
(Idiomarina loihiensis GSL 199)

3e-95

243) IL0564
( YP_154954.1 )

nucleoside-diphosphate-sugar epimerase

NC_006512
(Idiomarina loihiensis L2TR)

3e-95

244) Cyan8802_3926
( YP_003139565.1 )

NAD-dependent epimerase/dehydratase

NC_013161
(Cyanothece sp. PCC 8802)

4e-95

245) NE2277
( NP_842277.1 )

NAD-dependent epimerase/dehydratase family protein

NC_004757
(Nitrosomonas europaea ATCC 19718)

5e-95

246) Nit79A3_1528
( YP_004694752.1 )

NAD-dependent epimerase/dehydratase

NC_015731
(Nitrosomonas sp. Is79A3)

6e-95

247) BRADO5153
( YP_001207064.1 )

nucleotide sugar epimerase capsular polysaccharide biosynthesis protein

NC_009445
(Bradyrhizobium sp. ORS278)

8e-95

248) Suden_0894
( YP_393407.1 )

NAD-dependent epimerase/dehydratase

NC_007575
(Sulfurimonas denitrificans ATCC 33889)

1e-94

249) A35E_00433
( YP_006589155.1 )

nucleoside-diphosphate-sugar epimerase

NC_018420
(secondary endosymbiont of Heteropsylla cubana )

1e-94

250) Pfl01_4071
( YP_349799.1 )

NAD-dependent epimerase/dehydratase

NC_007492
(Pseudomonas fluorescens Pf0-1)

8e-95

251) Neut_0225
( YP_746474.1 )

NAD-dependent epimerase/dehydratase

NC_008344
(Nitrosomonas eutropha C91)

2e-94

252) Echvi_2328
( YP_007224586.1 )

nucleoside-diphosphate-sugar epimerase

NC_019904
(Echinicola vietnamensis DSM 17526)

2e-94

253) Dacet_2391
( YP_003505109.1 )

NAD-dependent epimerase/dehydratase

NC_013943
(Denitrovibrio acetiphilus DSM 12809)

3e-94

254) MU9_2318
( YP_007505737.1 )

Nucleotide sugar epimerase

NC_020418
(Morganella morganii KT)

3e-94

255) Mesop_5473
( YP_004613983.1 )

NAD-dependent epimerase/dehydratase

NC_015675
(Mesorhizobium opportunistum WSM2075)

3e-94

256) wcaG
( YP_003810296.1 )

Capsular polysaccharide biosynthesis protein I

NC_014366
(gamma proteobacterium HdN1)

4e-94

257) GY4MC1_1976
( YP_003989335.1 )

NAD-dependent epimerase/dehydratase

NC_014650
(Geobacillus sp. Y4.1MC1)

4e-94

258) Geoth_2066
( YP_004588087.1 )

UDP-glucuronate 5'-epimerase

NC_015660
(Geobacillus thermoglucosidasius C56-YS93)

4e-94

259) Hipma_1401
( YP_004340416.1 )

UDP-glucuronate 4-epimerase

NC_015318
(Hippea maritima DSM 10411)

4e-94

260) Csal_1760
( YP_573811.1 )

NAD-dependent epimerase/dehydratase

NC_007963
(Chromohalobacter salexigens DSM 3043)

4e-94

261) Tbd_2699
( YP_316457.1 )

nucleoside-diphosphate-sugar epimerase

NC_007404
(Thiobacillus denitrificans ATCC 25259)

5e-94

262) LFML04_0804
( YP_006765998.1 )

nucleoside-diphosphate-sugar epimerase

NC_018649
(Leptospirillum ferriphilum ML-04)

6e-94

263) wcfX
( YP_211537.1 )

LPS biosynthesis UDP-glucuronic acid epimerase

NC_003228
(Bacteroides fragilis NCTC 9343)

1e-93

264) BF1838
( YP_099119.1 )

UDP-glucuronic acid epimerase

NC_006347
(Bacteroides fragilis YCH46)

1e-93

265) BT_1342
( NP_810255.1 )

UDP-glucuronic acid epimerase

NC_004663
(Bacteroides thetaiotaomicron VPI-5482)

9e-94

266) ETAE_1203
( YP_003295257.1 )

nucleotide sugar epimerase

NC_013508
(Edwardsiella tarda EIB202)

9e-94

267) ETAF_1121
( YP_005698728.1 )

putative nucleotide sugar epimerase

NC_017309
(Edwardsiella tarda FL6-60)

9e-94

268) RPB_1554
( YP_485175.1 )

NAD-dependent epimerase/dehydratase

NC_007778
(Rhodopseudomonas palustris HaA2)

1e-93

269) BcerKBAB4_5065
( YP_001647839.1 )

NAD-dependent epimerase/dehydratase

NC_010184
(Bacillus weihenstephanensis KBAB4)

2e-93

270) RGE_03970
( YP_005435241.1 )

NAD-dependent epimerase/dehydratase family protein

NC_017075
(Rubrivivax gelatinosus IL144)

2e-93

271) Cyan10605_1135
( YP_007161301.1 )

UDP-glucuronate 4-epimerase

NC_019776
(Cyanobacterium aponinum PCC 10605)

3e-93

272) lpsL
( YP_004738195.1 )

UDP-glucuronate 4-epimerase

NC_015844
(Zobellia galactanivorans DsiJT)

3e-93

273) PCC8801_3879
( YP_002373984.1 )

NAD-dependent epimerase/dehydratase

NC_011726
(Cyanothece sp. PCC 8801)

4e-93

274) Halhy_3407
( YP_004448136.1 )

UDP-glucuronate 4-epimerase

NC_015510
(Haliscomenobacter hydrossis DSM 1100)

4e-93

275) Oscil6304_3549
( YP_007087032.1 )

nucleoside-diphosphate-sugar epimerase

NC_019693
(Oscillatoria acuminata PCC 6304)

4e-93

276) Dd1591_2850
( YP_003005151.1 )

NAD-dependent epimerase/dehydratase

NC_012912
(Dickeya zeae Ech1591)

1e-92

277) Sta7437_1561
( YP_007132094.1 )

UDP-glucuronate 5'-epimerase

NC_019748
(Stanieria cyanosphaera PCC 7437)

5e-93

278) Mrad2831_0674
( YP_001753368.1 )

NAD-dependent epimerase/dehydratase

NC_010505
(Methylobacterium radiotolerans JCM 2831)

6e-93

279) uge
( YP_003896074.1 )

NAD-dependent epimerase/dehydratase

NC_014532
(Halomonas elongata DSM 2581)

6e-93

280) PSEBR_a3748
( YP_004355104.1 )

UDP-glucuronate 5 -epimerase

NC_015379
(Pseudomonas brassicacearum NFM421)

6e-93

281) wcaG
( YP_001484669.1 )

nucleoside-diphosphate-sugar epimerase

NC_009840
(Prochlorococcus marinus MIT 9215)

8e-93

282) PputUW4_01986
( YP_007028995.1 )

UDP-glucuronate 5 -epimerase

NC_019670
(Pseudomonas sp. UW4)

9e-93

283) Echvi_3804
( YP_007226026.1 )

nucleoside-diphosphate-sugar epimerase

NC_019904
(Echinicola vietnamensis DSM 17526)

1e-92

284) NIES39_O04300
( YP_005072215.1 )

nucleotide sugar epimerase

NC_016640
(Arthrospira platensis NIES-39)

2e-92

285) Belba_2106
( YP_006407429.1 )

nucleoside-diphosphate-sugar epimerase

NC_018010
(Belliella baltica DSM 15883)

2e-92

286) SELR_26490
( YP_005434380.1 )

putative NAD-dependent epimerase/dehydratase

NC_017068
(Selenomonas ruminantium TAM6421)

2e-92

287) PFLCHA0_c31100
( YP_008000384.1 )

hypothetical protein

NC_021237
(Pseudomonas fluorescens CHA0)

2e-92

288) lspL
( YP_260185.1 )

UDP-glucuronate 5'-epimerase

NC_004129
(Pseudomonas protegens Pf-5)

2e-92

289) glr1068
( NP_924014.1 )

nucleotide sugar epimerase

NC_005125
(Gloeobacter violaceus PCC 7421)

2e-92

290) Ppro_3406
( YP_903056.1 )

NAD-dependent epimerase/dehydratase

NC_008609
(Pelobacter propionicus DSM 2379)

3e-92

291) PSF113_1969
( YP_005207376.1 )

NAD-dependent epimerase/dehydratase

NC_016830
(Pseudomonas fluorescens F113)

4e-92

292) Mic7113_3712
( YP_007122838.1 )

nucleoside-diphosphate-sugar epimerase

NC_019738
(Microcoleus sp. PCC 7113)

4e-92

293) Dda3937_04708
( YP_003882180.1 )

dTDP-glucose 4,6-dehydratase

NC_014500
(Dickeya dadantii 3937)

5e-92

294) Lcho_3079
( YP_001792104.1 )

NAD-dependent epimerase/dehydratase

NC_010524
(Leptothrix cholodnii SP-6)

5e-92

295) Q7S_13175
( YP_005402423.1 )

NAD-dependent epimerase/dehydratase

NC_017047
(Rahnella aquatilis HX2)

6e-92

296) Rahaq_2645
( YP_004213379.1 )

NAD-dependent epimerase/dehydratase

NC_015061
(Rahnella sp. Y9602)

6e-92

297) PCNPT3_02605
( YP_007639301.1 )

nucleotide sugar epimerase

NC_020802
(Psychromonas sp. CNPT3)

6e-92

298) wcaG-3
( YP_729470.1 )

WbnF

NC_008319
(Synechococcus sp. CC9311)

6e-92

299) Syncc9605_0191
( YP_380522.1 )

nucleotide sugar epimerase

NC_007516
(Synechococcus sp. CC9605)

6e-92

300) tll1200
( NP_681990.1 )

nucleotide sugar epimerase

NC_004113
(Thermosynechococcus elongatus BP-1)

1e-91

301) Nham_1302
( YP_576587.1 )

NAD-dependent epimerase/dehydratase

NC_007964
(Nitrobacter hamburgensis X14)

1e-91

302) Dalk_1699
( YP_002430864.1 )

NAD-dependent epimerase/dehydratase

NC_011768
(Desulfatibacillum alkenivorans AK-01)

2e-91

303) Fbal_0146
( YP_003911434.1 )

NAD-dependent epimerase/dehydratase

NC_014541
(Ferrimonas balearica DSM 9799)

2e-91

304) GNIT_2523
( YP_004872613.1 )

capsular polysaccharide biosynthesis protein I

NC_016041
(Glaciecola nitratireducens FR1064)

3e-91

305) DMR_00110
( YP_002951388.1 )

UDP-glucuronate 5'-epimerase

NC_012796
(Desulfovibrio magneticus RS-1)

3e-91

306) Atc_1646
( YP_004748995.1 )

NAD-dependent epimerase/dehydratase

NC_015850
(Acidithiobacillus caldus SM-1)

3e-91

307) Mesci_4979
( YP_004144132.1 )

NAD-dependent epimerase/dehydratase

NC_014923
(Mesorhizobium ciceri WSM1271)

3e-91

308) AvCA_05410
( YP_007891581.1 )

NAD-dependent epimerase/dehydratase

NC_021149
(Azotobacter vinelandii CA)

3e-91

309) AvCA6_05410
( YP_007896629.1 )

NAD-dependent epimerase/dehydratase

NC_021150
(Azotobacter vinelandii CA6)

3e-91

310) Avin_05410
( YP_002797769.1 )

NAD-dependent epimerase/dehydratase

NC_012560
(Azotobacter vinelandii DJ)

3e-91

311) UCYN_12340
( YP_003422283.1 )

nucleoside-diphosphate-sugar epimerase

NC_013771
(Cyanobacterium sp. UCYN-A)

4e-91

312) Syncc9902_0223
( YP_376241.1 )

nucleotide sugar epimerase

NC_007513
(Synechococcus sp. CC9902)

4e-91

313) Ftrac_0598
( YP_004052708.1 )

nad-dependent epimerase/dehydratase

NC_014759
(Marivirga tractuosa DSM 4126)

4e-91

314) mlr7549
( NP_107840.1 )

nucleotide sugar epimerase

NC_002678
(Mesorhizobium loti MAFF303099)

4e-91

315) Celal_3145
( YP_004165917.1 )

UDP-glucuronate 4-epimerase

NC_014934
(Cellulophaga algicola DSM 14237)

5e-91

316) CtCNB1_0108
( YP_003276150.1 )

NAD-dependent epimerase/dehydratase

NC_013446
(Comamonas testosteroni CNB-1)

5e-91

317) SPISAL_08130
( YP_008047185.1 )

NAD-dependent epimerase/dehydratase

NC_021291
(Spiribacter salinus M19-40)

5e-91

318) noeL
( YP_005612290.1 )

UDP-glucuronic acid epimerase

NC_017249
(Bradyrhizobium japonicum USDA 6)

1e-90

319) Mesau_05055
( YP_007306743.1 )

nucleoside-diphosphate-sugar epimerase

NC_019973
(Mesorhizobium australicum WSM2073)

1e-90

320) Acin_0072
( YP_004895466.1 )

NAD-dependent epimerase/dehydratase

NC_016077
(Acidaminococcus intestini RyC-MR95)

8e-91

321) Nwi_1074
( YP_317688.1 )

NAD-dependent epimerase/dehydratase

NC_007406
(Nitrobacter winogradskyi Nb-255)

9e-91

322) A2cp1_4436
( YP_002494819.1 )

NAD-dependent epimerase/dehydratase

NC_011891
(Anaeromyxobacter dehalogenans 2CP-1)

1e-90

323) R2APBS1_2153
( YP_007590504.1 )

nucleoside-diphosphate-sugar epimerase

NC_020541
(Rhodanobacter sp. 2APBS1)

1e-90

324) capI
( YP_003456630.1 )

protein capI

NC_013861
(Legionella longbeachae NSW150)

2e-90

325) Acfer_0500
( YP_003398218.1 )

NAD-dependent epimerase/dehydratase

NC_013740
(Acidaminococcus fermentans DSM 20731)

2e-90

326) Tola_0275
( YP_002891491.1 )

NAD-dependent epimerase/dehydratase

NC_012691
(Tolumonas auensis DSM 9187)

2e-90

327) Adeh_0221
( YP_463435.1 )

NAD-dependent epimerase/dehydratase

NC_007760
(Anaeromyxobacter dehalogenans 2CP-C)

2e-90

328) CCV52592_1226
( YP_001407694.1 )

NAD-dependent epimerase/dehydratase family protein

NC_009715
(Campylobacter curvus 525.92)

3e-90

329) SYNW0200
( NP_896295.1 )

nucleotide sugar epimerase

NC_005070
(Synechococcus sp. WH 8102)

3e-90

330) Mesau_02518
( YP_007304316.1 )

nucleoside-diphosphate-sugar epimerase

NC_019973
(Mesorhizobium australicum WSM2073)

4e-90

331) lspL
( NP_769022.1 )

UDP-glucuronic acid epimerase

NC_004463
(Bradyrhizobium japonicum USDA 110)

4e-90

332) A2cp1_0243
( YP_002490668.1 )

NAD-dependent epimerase/dehydratase

NC_011891
(Anaeromyxobacter dehalogenans 2CP-1)

6e-90

333) Rvan_0401
( YP_004010786.1 )

NAD-dependent epimerase/dehydratase

NC_014664
(Rhodomicrobium vannielii ATCC 17100)

7e-90

334) Acife_1710
( YP_004784169.1 )

NAD-dependent epimerase/dehydratase

NC_015942
(Acidithiobacillus ferrivorans SS3)

9e-90

335) lspL
( YP_005452946.1 )

UDP-glucuronic acid epimerase

NC_017082
(Bradyrhizobium sp. S23321)

9e-90

336) AnaeK_0232
( YP_002132603.1 )

NAD-dependent epimerase/dehydratase

NC_011145
(Anaeromyxobacter sp. K)

1e-89

337) Tcr_1509
( YP_391775.1 )

NAD-dependent epimerase/dehydratase

NC_007520
(Thiomicrospira crunogena XCL-2)

2e-89

338) CPS_0592
( YP_267342.1 )

capsular polysaccharide biosynthesis protein

NC_003910
(Colwellia psychrerythraea 34H)

2e-89

339) KKY_3138
( YP_004900878.1 )

dTDP-glucose 4,6-dehydratase

NC_016078
(Pelagibacterium halotolerans B2)

2e-89

340) Dtpsy_0401
( YP_002551885.1 )

nad-dependent epimerase/dehydratase

NC_011992
(Acidovorax ebreus TPSY)

2e-89

341) Chro_0096
( YP_007089522.1 )

NAD-dependent epimerase/dehydratase

NC_019695
(Chroococcidiopsis thermalis PCC 7203)

3e-89

342) Pedsa_0830
( YP_004273224.1 )

NAD-dependent epimerase/dehydratase

NC_015177
(Pedobacter saltans DSM 12145)

3e-89

343) Sdel_1792
( YP_003304842.1 )

NAD-dependent epimerase/dehydratase

NC_013512
(Sulfurospirillum deleyianum DSM 6946)

4e-89

344) P700755_002082
( YP_006867625.1 )

UDP-D-glucuronic acid 4-epimerase

NC_018721
(Psychroflexus torquis ATCC 700755)

4e-89

345) Murru_2323
( YP_004788783.1 )

UDP-glucuronate 4-epimerase

NC_015945
(Muricauda ruestringensis DSM 13258)

4e-89

346) SVI_1494
( YP_003556243.1 )

nucleotide sugar epimerase

NC_014012
(Shewanella violacea DSS12)

5e-89

347) Glaag_3319
( YP_004435521.1 )

NAD-dependent epimerase/dehydratase

NC_015497
(Glaciecola sp. 4H-3-7+YE-5)

6e-89

348) AHA_0962
( YP_855506.1 )

nucleotide sugar epimerase

NC_008570
(Aeromonas hydrophila ATCC 7966)

7e-89

349) R2APBS1_1046
( YP_007589437.1 )

nucleoside-diphosphate-sugar epimerase

NC_020541
(Rhodanobacter sp. 2APBS1)

1e-88

350) AHML_05150
( YP_008042161.1 )

nucleotide sugar epimerase

NC_021290
(Aeromonas hydrophila ML09-119)

1e-88

351) Acife_0994
( YP_004783490.1 )

NAD-dependent epimerase/dehydratase

NC_015942
(Acidithiobacillus ferrivorans SS3)

1e-88

352) FB2170_10021
( YP_003862881.1 )

putative UDP-glucuronic acid epimerase

NC_014472
(Maribacter sp. HTCC2170)

2e-88

353) PsycPRwf_0982
( YP_001279882.1 )

NAD-dependent epimerase/dehydratase

NC_009524
(Psychrobacter sp. PRwf-1)

2e-88

354) Selin_2201
( YP_004113477.1 )

NAD-dependent epimerase/dehydratase

NC_014836
(Desulfurispirillum indicum S5)

2e-88

355) PP4_28840
( YP_008113921.1 )

putative nucleotide sugar epimerase

NC_021505
(Pseudomonas putida NBRC 14164)

3e-88

356) Mlg_2678
( YP_743508.1 )

NAD-dependent epimerase/dehydratase

NC_008340
(Alkalilimnicola ehrlichii MLHE-1)

3e-88

357) Niako_7109
( YP_005012733.1 )

UDP-glucuronate 4-epimerase

NC_016609
(Niastella koreensis GR20-10)

3e-88

358) Ajs_0409
( YP_984737.1 )

NAD-dependent epimerase/dehydratase

NC_008782
(Acidovorax sp. JS42)

3e-88

359) AFE_0609
( YP_002425098.1 )

NAD-dependent epimerase/dehydratase family protein

NC_011761
(Acidithiobacillus ferrooxidans ATCC 23270)

3e-88

360) Lferr_0760
( YP_002219217.1 )

NAD-dependent epimerase/dehydratase

NC_011206
(Acidithiobacillus ferrooxidans ATCC 53993)

3e-88

361) P9211_12841
( YP_001551169.1 )

nucleotide sugar epimerase

NC_009976
(Prochlorococcus marinus MIT 9211)

4e-88

362) RSPPHO_02502
( YP_005418098.1 )

UDP-glucuronate 5'-epimerase

NC_017059
(Rhodospirillum photometricum DSM 122)

4e-88

363) Mmwyl1_0799
( YP_001339668.1 )

NAD-dependent epimerase/dehydratase

NC_009654
(Marinomonas sp. MWYL1)

1e-87

364) BBR47_42600
( YP_002773741.1 )

nucleotide sugar epimerase

NC_012491
(Brevibacillus brevis NBRC 100599)

2e-87

365) B565_3268
( YP_004393920.1 )

NAD dependent epimerase/dehydratase family protein

NC_015424
(Aeromonas veronii B565)

2e-87

366) Sama_2235
( YP_928110.1 )

NAD dependent epimerase/dehydratase family protein

NC_008700
(Shewanella amazonensis SB2B)

2e-87

367) Psyr_5106
( YP_238171.1 )

NAD-dependent epimerase/dehydratase

NC_007005
(Pseudomonas syringae B728a)

2e-87

368) Mlab_0897
( YP_001030335.1 )

hypothetical protein

NC_008942
(Methanocorpusculum labreanum Z)

3e-87

369) PHZ_c2237
( YP_002131076.1 )

NAD-dependent epimerase/dehydratase

NC_011144
(Phenylobacterium zucineum HLK1)

3e-87

370) AFE_1966
( YP_002426373.1 )

NAD-dependent epimerase/dehydratase family protein

NC_011761
(Acidithiobacillus ferrooxidans ATCC 23270)

3e-87

371) Lferr_1634
( YP_002220063.1 )

NAD-dependent epimerase/dehydratase

NC_011206
(Acidithiobacillus ferrooxidans ATCC 53993)

3e-87

372) PMT1903
( NP_895729.1 )

nucleotide sugar epimerase

NC_005071
(Prochlorococcus marinus MIT 9313)

4e-87

373) P9303_25381
( YP_001018534.1 )

nucleotide sugar epimerase

NC_008820
(Prochlorococcus marinus MIT 9303)

4e-87

374) L483_12850
( YP_008094355.1 )

NAD-dependent epimerase

NC_021491
(Pseudomonas putida H8234)

4e-87

375) PputGB1_2847
( YP_001669077.1 )

NAD-dependent epimerase/dehydratase

NC_010322
(Pseudomonas putida GB-1)

5e-87

376) BF3921
( YP_101197.1 )

UDP-glucuronic acid epimerase

NC_006347
(Bacteroides fragilis YCH46)

1e-86

377) Sfri_1374
( YP_750065.1 )

NAD-dependent epimerase/dehydratase

NC_008345
(Shewanella frigidimarina NCIMB 400)

5e-87

378) PSPTO_5586
( NP_795306.1 )

capsular polysaccharide biosynthesis protein

NC_004578
(Pseudomonas syringae DC3000)

5e-87

379) Alide_0482
( YP_004125141.1 )

NAD-dependent epimerase/dehydratase

NC_014910
(Alicycliphilus denitrificans BC)

6e-87

380) wbnF
( YP_005060500.1 )

NAD-dependent epimerase/dehydratase

NC_016632
(Serratia symbiotica Cinara cedri)

7e-87

381) Fraau_2452
( YP_005378497.1 )

nucleoside-diphosphate-sugar epimerase

NC_017033
(Frateuria aurantia DSM 6220)

8e-87

382) Odosp_0133
( YP_004251425.1 )

UDP-glucuronate 4-epimerase

NC_015160
(Odoribacter splanchnicus DSM 220712)

8e-87

383) HYPMC_2845
( YP_004676630.1 )

hypothetical protein

NC_015717
(Hyphomicrobium sp. MC1)

9e-87

384) LPV_1958
( YP_006508959.1 )

UDP-glucuronate 5'-epimerase

NC_018140
(Legionella pneumophila HL06041035)

9e-87

385) Alide2_0439
( YP_004386374.1 )

UDP-glucuronate 5'-epimerase

NC_015422
(Alicycliphilus denitrificans K601)

9e-87

386) PputUW4_03050
( YP_007030050.1 )

NAD-dependent epimerase/dehydratase

NC_019670
(Pseudomonas sp. UW4)

1e-86

387) Patl_1087
( YP_660667.1 )

NAD-dependent epimerase/dehydratase

NC_008228
(Pseudoalteromonas atlantica T6c)

2e-86

388) SynRCC307_0185
( YP_001226441.1 )

NAD dependent epimerase/dehydratase

NC_009482
(Synechococcus sp. RCC307)

2e-86

389) wcaG
( NP_875706.1 )

NAD dependent epimerase/dehydratase

NC_005042
(Prochlorococcus marinus CCMP1375)

2e-86

390) RPC_1433
( YP_531314.1 )

NAD-dependent epimerase/dehydratase

NC_007925
(Rhodopseudomonas palustris BisB18)

3e-86

391) SynWH7803_0245
( YP_001223968.1 )

NAD dependent epimerase/dehydratase

NC_009481
(Synechococcus sp. WH 7803)

3e-86

392) Cyagr_2146
( YP_007046603.1 )

nucleoside-diphosphate-sugar epimerase

NC_019675
(Cyanobium gracile PCC 6307)

3e-86

393) S70_10660
( YP_006216677.1 )

nucleotide sugar epimerase

NC_017731
(Providencia stuartii MRSN 2154)

4e-86

394) SELR_26820
( YP_005434413.1 )

putative NAD-dependent epimerase/dehydratase

NC_017068
(Selenomonas ruminantium TAM6421)

6e-86

395) ASA_3338
( YP_001143066.1 )

UDP-glucuronate 5'-epimerase

NC_009348
(Aeromonas salmonicida A449)

1e-85

396) Cpin_1080
( YP_003120779.1 )

NAD-dependent epimerase/dehydratase

NC_013132
(Chitinophaga pinensis DSM 2588)

2e-85

397) Rru_A3576
( YP_428657.1 )

UDP-glucuronate 5'-epimerase

NC_007643
(Rhodospirillum rubrum ATCC 11170)

1e-84

398) F11_18305
( YP_006049918.1 )

UDP-glucuronate 5'-epimerase

NC_017584
(Rhodospirillum rubrum F11)

1e-84

399) Anamo_1185
( YP_006444128.1 )

nucleoside-diphosphate-sugar epimerase

NC_018024
(Anaerobaculum mobile DSM 13181)

7e-85

400) BN69_2393
( YP_006592495.1 )

NAD-dependent epimerase/dehydratase

NC_018485
(Methylocystis sp. SC2)

7e-85

401) PSEBR_a2943
( YP_004354249.1 )

UDP-glucuronate 5 -epimerase

NC_015379
(Pseudomonas brassicacearum NFM421)

9e-85

402) Desor_5182
( YP_004973084.1 )

nucleoside-diphosphate-sugar epimerase

NC_016584
(Desulfosporosinus orientis DSM 765)

2e-84

403) BF638R_3294
( YP_005112296.1 )

putative UDP-glucuronic acid epimerase

NC_016776
(Bacteroides fragilis 638R)

2e-84

404) BF3259
( YP_212873.1 )

UDP-glucuronic acid epimerase

NC_003228
(Bacteroides fragilis NCTC 9343)

2e-84

405) BF3440
( YP_100717.1 )

UDP-glucuronic acid epimerase

NC_006347
(Bacteroides fragilis YCH46)

2e-84

406) PSF113_2845
( YP_005208244.1 )

dTDP-glucose 4,6-dehydratase

NC_016830
(Pseudomonas fluorescens F113)

4e-84

407) lpsL
( YP_007334725.1 )

UDP-glucuronic acid epimerase protein

NC_020059
(Rhizobium tropici CIAT 899)

4e-84

408) Spica_1469
( YP_004698121.1 )

UDP-glucuronate 4-epimerase

NC_015732
(Treponema caldaria DSM 7334)

4e-84

409) TREPR_2368
( YP_004530705.1 )

UDP-glucuronate 5'-epimerase

NC_015578
(Treponema primitia ZAS-2)

1e-83

410) SpiGrapes_1571
( YP_005062388.1 )

nucleoside-diphosphate-sugar epimerase

NC_016633
(Sphaerochaeta pleomorpha Grapes)

8e-84

411) PSEEN3360
( YP_608902.1 )

UDP-glucuronate 5'-epimerase

NC_008027
(Pseudomonas entomophila L48)

9e-84

412) Cphy_1211
( YP_001558328.1 )

NAD-dependent epimerase/dehydratase

NC_010001
(Clostridium phytofermentans ISDg)

1e-83

413) P9301_13991
( YP_001091623.1 )

nucleotide sugar epimerase

NC_009091
(Prochlorococcus marinus MIT 9301)

2e-83

414) Rvan_0185
( YP_004010574.1 )

NAD-dependent epimerase/dehydratase

NC_014664
(Rhodomicrobium vannielii ATCC 17100)

2e-83

415) Saro_3151
( YP_498420.1 )

NAD-dependent epimerase/dehydratase

NC_007794
(Novosphingobium aromaticivorans DSM 12444)

2e-83

416) GFO_0148
( YP_860213.1 )

CapI-like UDP-glucuronic acid epimerase

NC_008571
(Gramella forsetii KT0803)

2e-83

417) RB2501_13454
( YP_003195680.1 )

udp-glucuronic acid epimerase

NC_013222
(Robiginitalea biformata HTCC2501)

3e-83

418) NATL1_03951
( YP_001014224.1 )

nucleotide sugar epimerase

NC_008819
(Prochlorococcus marinus NATL1A)

5e-83

419) PMN2A_1681
( YP_292872.1 )

nucleotide sugar epimerase

NC_007335
(Prochlorococcus marinus NATL2A)

5e-83

420) NH8B_4033
( YP_004849184.1 )

NAD-dependent epimerase/dehydratase

NC_016002
(Pseudogulbenkiania sp. NH8B)

5e-83

421) P700755_001643
( YP_006867258.1 )

UDP-D-glucuronic acid 4-epimerase

NC_018721
(Psychroflexus torquis ATCC 700755)

5e-83

422) BJ6T_63240
( YP_005611161.1 )

UDP-glucuronic acid epimerase

NC_017249
(Bradyrhizobium japonicum USDA 6)

7e-83

423) Snov_3206
( YP_003695100.1 )

NAD-dependent epimerase/dehydratase

NC_014217
(Starkeya novella DSM 506)

7e-83

424) H681_01080
( YP_007655638.1 )

UDP-glucuronate 5'-epimerase

NC_020829
(Pseudomonas denitrificans ATCC 13867)

1e-82

425) A7H1H_0655
( YP_008330599.1 )

NAD-dependent epimerase/dehydratase family protein

NC_021878
(Arcobacter butzleri 7h1h)

2e-82

426) Mext_3553
( YP_001641004.1 )

NAD-dependent epimerase/dehydratase

NC_010172
(Methylobacterium extorquens PA1)

1e-81

427) BJ6T_37860
( YP_005608648.1 )

UDP-glucuronic acid epimerase

NC_017249
(Bradyrhizobium japonicum USDA 6)

1e-81

428) HNE_2639
( YP_761327.1 )

UDP-glucuronate 5'-epimerase

NC_008358
(Hyphomonas neptunium ATCC 15444)

1e-81

429) lspL
( NP_772560.1 )

UDP-glucuronic acid epimerase

NC_004463
(Bradyrhizobium japonicum USDA 110)

7e-82

430) HMPREF0351_11960
( YP_006376566.1 )

UDP-glucuronate 5'-epimerase

NC_017960
(Enterococcus faecium DO)

8e-82

431) BCE_5384
( NP_981676.1 )

NAD dependent epimerase/dehydratase family protein

NC_003909
(Bacillus cereus ATCC 10987)

2e-81

432) Ddes_0025
( YP_002478623.1 )

NAD-dependent epimerase/dehydratase

NC_011883
(Desulfovibrio desulfuricans ATCC 27774)

2e-81

433) FP2_31550
( YP_007838679.1 )

Nucleoside-diphosphate-sugar epimerases

NC_021042
(Faecalibacterium prausnitzii L2/6)

2e-81

434) Jann_0077
( YP_508019.1 )

NAD-dependent epimerase/dehydratase

NC_007802
(Jannaschia sp. CCS1)

2e-81

435) SpiBuddy_1808
( YP_004247826.1 )

UDP-glucuronate 4-epimerase

NC_015152
(Sphaerochaeta globosa Buddy)

3e-81

436) Rleg2_2997
( YP_002282490.1 )

NAD-dependent epimerase/dehydratase

NC_011369
(Rhizobium leguminosarum WSM2304)

3e-81

437) Ccan_23190
( YP_004741541.1 )

putative UDP-glucuronate 4-epimerase

NC_015846
(Capnocytophaga canimorsus Cc5)

4e-81

438) lspL
( YP_007701513.1 )

UDP-glucoronate5'-epimerase LspL

NC_020908
(Octadecabacter arcticus 238)

4e-81

439) lspL
( YP_005269757.1 )

UDP-glucuronate 5'-epimerase LspL

NC_016894
(Acetobacterium woodii DSM 1030)

4e-81

440) lspL1
( YP_003577250.1 )

UDP-glucuronate 5'-epimerase

NC_014034
(Rhodobacter capsulatus SB 1003)

1e-80

441) SL003B_0745
( YP_004302474.1 )

NAD-dependent epimerase/dehydratase:Short-chain dehydrogenase/reductase SDR

NC_015259
(Polymorphum gilvum SL003B-26A1)

6e-81

442) BCK_09055
( YP_006595920.1 )

NAD dependent epimerase/dehydratase

NC_018491
(Bacillus cereus FRI-35)

7e-81

443) TERTU_1413
( YP_003072965.1 )

UDP-glucuronate 5'-epimerase

NC_012997
(Teredinibacter turnerae T7901)

7e-81

444) lpsL
( YP_001979616.1 )

UDP-glucuronic acid epimerase

NC_010994
(Rhizobium etli CIAT 652)

7e-81

445) AZC_2261
( YP_001525177.1 )

UDP-glucuronate 5'-epimerase

NC_009937
(Azorhizobium caulinodans ORS 571)

8e-81

446) BT_0380
( NP_809293.1 )

nucleotide sugar epimerase

NC_004663
(Bacteroides thetaiotaomicron VPI-5482)

1e-80

447) BXY_03140
( YP_007791169.1 )

Nucleoside-diphosphate-sugar epimerases

NC_021017
(Bacteroides xylanisolvens XB1A)

1e-80

448) GLX_11850
( YP_004867967.1 )

UDP-N-acetylglucosamine 4-epimerase

NC_016027
(Gluconacetobacter xylinus NBRC 3288)

2e-80

449) Tresu_1529
( YP_004365726.1 )

UDP-glucuronate 4-epimerase

NC_015385
(Treponema succinifaciens DSM 2489)

2e-80

450) lspL
( YP_769256.1 )

UDP-glucuronate 5'-epimerase

NC_008380
(Rhizobium leguminosarum 3841)

2e-80

451) PMT9312_1313
( YP_397808.1 )

nucleotide sugar epimerase

NC_007577
(Prochlorococcus marinus MIT 9312)

2e-80

452) PMM1210
( NP_893327.1 )

nucleotide sugar epimerase

NC_005072
(Prochlorococcus marinus CCMP1986)

3e-80

453) OB2883
( NP_693805.1 )

nucleotide sugar epimerase

NC_004193
(Oceanobacillus iheyensis HTE831)

3e-80

454) BN69_2304
( YP_006592406.1 )

NAD-dependent epimerase/dehydratase

NC_018485
(Methylocystis sp. SC2)

3e-80

455) lspL2
( YP_003578103.1 )

UDP-glucuronate 5'-epimerase

NC_014034
(Rhodobacter capsulatus SB 1003)

4e-80

456) Rleg_3246
( YP_002977033.1 )

NAD-dependent epimerase/dehydratase

NC_012850
(Rhizobium leguminosarum WSM1325)

4e-80

457) llh_0450
( YP_005874689.1 )

Alpha-D-GlcNAc alpha-1,2-L-rhamnosyltransferase

NC_017492
(Lactococcus lactis A76)

1e-79

458) RPE_1454
( YP_780384.1 )

NAD-dependent epimerase/dehydratase

NC_008435
(Rhodopseudomonas palustris BisA53)

1e-79

459) lpsL
( YP_005188093.1 )

capsular polysaccharide biosynthesis protein I

NC_016812
(Sinorhizobium fredii HH103)

1e-79

460) BF638R_1542
( YP_005110623.1 )

putative NAD dependent epimerase

NC_016776
(Bacteroides fragilis 638R)

2e-79

461) Rumal_0412
( YP_004103601.1 )

NAD-dependent epimerase/dehydratase

NC_014833
(Ruminococcus albus 7)

2e-79

462) NGR_c08380
( YP_002825382.1 )

UDP-glucuronate 5'-epimerase

NC_012587
(Sinorhizobium fredii NGR234)

3e-79

463) CbC4_0718
( YP_004395395.1 )

NAD-dependent epimerase/dehydratase

NC_015425
(Clostridium botulinum BKT015925)

4e-79

464) RHECIAT_PC0000849
( YP_001985469.1 )

putative nucleoside-diphosphate-sugar epimerase

NC_010997
(Rhizobium etli CIAT 652)

4e-79

465) RPD_1617
( YP_568755.1 )

NAD-dependent epimerase/dehydratase

NC_007958
(Rhodopseudomonas palustris BisB5)

5e-79

466) lspL
( YP_006396157.1 )

UDP-glucuronate 5'-epimerase LspL

NC_018000
(Sinorhizobium fredii USDA 257)

6e-79

467) Dtox_3989
( YP_003193305.1 )

NAD-dependent epimerase/dehydratase

NC_013216
(Desulfotomaculum acetoxidans DSM 771)

1e-78

468) lspL
( YP_007706709.1 )

UDP-glucoronate 5'-epimerase LspL

NC_020911
(Octadecabacter antarcticus 307)

1e-78

469) Dfer_4589
( YP_003088955.1 )

NAD-dependent epimerase/dehydratase

NC_013037
(Dyadobacter fermentans DSM 18053)

1e-78

470) Xaut_3569
( YP_001418454.1 )

NAD-dependent epimerase/dehydratase

NC_009720
(Xanthobacter autotrophicus Py2)

9e-79

471) BCO26_0348
( YP_004567793.1 )

NAD-dependent epimerase/dehydratase

NC_015634
(Bacillus coagulans 2-6)

2e-78

472) BT_0600
( NP_809513.1 )

nucleotide sugar epimerase

NC_004663
(Bacteroides thetaiotaomicron VPI-5482)

2e-78

473) lspL
( YP_005449660.1 )

UDP-glucuronic acid epimerase

NC_017082
(Bradyrhizobium sp. S23321)

2e-78

474) Rpal_4503
( YP_001993474.1 )

NAD-dependent epimerase/dehydratase

NC_011004
(Rhodopseudomonas palustris TIE-1)

2e-78

475) PGA1_65p00440
( YP_006564777.1 )

UDP-glucuronate 5'-epimerase

NC_018288
(Phaeobacter gallaeciensis DSM 17395)

2e-78

476) lpsL
( YP_470738.1 )

UDP-glucuronic acid epimerase

NC_007761
(Rhizobium etli CFN 42)

2e-78

477) C770_GR4Chr1091
( YP_007189651.1 )

Nucleoside-diphosphate-sugar epimerase

NC_019845
(Sinorhizobium meliloti GR4)

3e-78

478) lspL
( YP_006839689.1 )

UDP-glucuronate 5'-epimerase

NC_018700
(Sinorhizobium meliloti Rm41)

3e-78

479) P9515_13711
( YP_001011685.1 )

nucleotide sugar epimerase

NC_008817
(Prochlorococcus marinus MIT 9515)

3e-78

480) mll6759
( NP_107206.1 )

nucleotide sugar epimerase

NC_002678
(Mesorhizobium loti MAFF303099)

4e-78

481) lpsL
( NP_385189.1 )

UDP-glucuronic acid epimerase

NC_003047
(Sinorhizobium meliloti 1021)

4e-78

482) lpsL
( YP_007574347.1 )

UDP-glucuronate 5'-epimerase

NC_020528
(Sinorhizobium meliloti 2011)

4e-78

483) SinmeB_0705
( YP_005712883.1 )

UDP-glucuronate 5'-epimerase

NC_017322
(Sinorhizobium meliloti BL225C)

4e-78

484) lpsL
( YP_005719287.1 )

LpsL UDP-glucuronate 5'-epimerase

NC_017325
(Sinorhizobium meliloti SM11)

4e-78

485) GDI_2522
( YP_001602766.1 )

UDP-glucuronate 5'-epimerase (UDP-glucuronic aci epimerase)

NC_010125
(Gluconacetobacter diazotrophicus PAl 5)

4e-78

486) Gdia_0764
( YP_002275169.1 )

NAD-dependent epimerase/dehydratase

NC_011365
(Gluconacetobacter diazotrophicus PAl 5)

4e-78

487) Weevi_0960
( YP_004238248.1 )

UDP-glucuronate 5'-epimerase

NC_015144
(Weeksella virosa DSM 16922)

5e-78

488) Anae109_4196
( YP_001381358.1 )

NAD-dependent epimerase/dehydratase

NC_009675
(Anaeromyxobacter sp. Fw109-5)

1e-77

489) Smed_0689
( YP_001326380.1 )

NAD-dependent epimerase/dehydratase

NC_009636
(Sinorhizobium medicae WSM419)

6e-78

490) PGA2_71p460
( YP_006589842.1 )

UDP-glucuronate 5'-epimerase

NC_018422
(Phaeobacter gallaeciensis 2.10)

6e-78

491) lpsL
( YP_008365982.1 )

UDP-glucuronate 5'-epimerase

NC_021905
(Rhizobium etli Mim1)

6e-78

492) Krodi_2784
( YP_004432027.1 )

NAD-dependent epimerase/dehydratase

NC_015496
(Krokinobacter sp. 4H-3-7-5)

6e-78

493) Spith_0050
( YP_006044054.1 )

NAD-dependent epimerase/dehydratase

NC_017583
(Spirochaeta thermophila DSM 6578)

6e-78

494) Rsph17025_4099
( YP_001170256.1 )

hypothetical protein

NC_009430
(Rhodobacter sphaeroides ATCC 17025)

7e-78

495) Bl12_1315
( YP_008144146.1 )

NAD-dependent epimerase/dehydratase

NC_021593
(animalis lactis Bl12)

8e-78

496) W7Y_1401
( YP_006301326.1 )

dTDP-glucose 4,6-dehydratase

NC_017866
(Bifidobacterium animalis B420)

8e-78

497) BIF_01577
( YP_005575798.1 )

UDP-glucuronate 4-epimerase

NC_017214
(Bifidobacterium animalis BB-12)

8e-78

498) W91_1436
( YP_006302919.1 )

dTDP-glucose 4,6-dehydratase

NC_017867
(Bifidobacterium animalis Bi-07)

8e-78

499) Balac_1399
( YP_002968810.1 )

nucleotide sugar epimerase

NC_012814
(Bifidobacterium animalis Bl-04)

8e-78

500) BLC1_1356
( YP_005580160.1 )

NAD-dependent epimerase/dehydratase

NC_017216
(Bifidobacterium animalis BLC1)

8e-78

501) BALAC2494_01337
( YP_005578586.1 )

Isomerase acting on carbohydrates and derivatives

NC_017215
(Bifidobacterium animalis CNCM I-2494)

8e-78

502) Balat_1399
( YP_002970377.1 )

nucleotide sugar epimerase

NC_012815
(Bifidobacterium animalis DSM 10140)

8e-78

503) BalV_1356
( YP_005581723.1 )

nucleotide sugar epimerase

NC_017217
(Bifidobacterium animalis V9)

8e-78

504) wbnF
( NP_949317.1 )

nucleotide sugar epimerase

NC_005296
(Rhodopseudomonas palustris CGA009)

1e-77

505) Rsph17029_4095
( YP_001041809.1 )

NAD-dependent epimerase/dehydratase

NC_009040
(Rhodobacter sphaeroides ATCC 17029)

1e-77

506) KE3_0784
( YP_008356098.1 )

UDP-glucuronate 4-epimerase

NC_021900
(Streptococcus lutetiensis 033)

2e-77

507) RSP_3926
( REF_jgi:RSP_3926 )

NAD-dependent epimerase/dehydratase

NC_009007
(Rhodobacter sphaeroides 2.4.1)

2e-77

508) RSKD131_4531
( YP_002523244.1 )

NAD-dependent epimerase/dehydratase

NC_011960
(Rhodobacter sphaeroides KD131)

2e-77

509) capI
( YP_003873299.1 )

protein CapI

NC_014484
(Spirochaeta thermophila DSM 6192)

2e-77

510) BLA_0602
( YP_002469475.1 )

NAD-dependent epimerase/dehydratase

NC_011835
(Bifidobacterium animalis AD011)

2e-77

511) Swit_0844
( YP_001261349.1 )

NAD-dependent epimerase/dehydratase

NC_009511
(Sphingomonas wittichii RW1)

2e-77

512) RUM_09610
( YP_007829139.1 )

Nucleoside-diphosphate-sugar epimerases

NC_021039
(Ruminococcus champanellensis 18P13)

3e-77

513) Plav_1922
( YP_001413194.1 )

NAD-dependent epimerase/dehydratase

NC_009719
(Parvibaculum lavamentivorans DS-1)

6e-77

514) G432_07445
( YP_007615810.1 )

NAD-dependent epimerase/dehydratase

NC_020561
(Sphingomonas sp. MM-1)

7e-77

515) Psesu_2998
( YP_004148052.1 )

NAD-dependent epimerase/dehydratase

NC_014924
(Pseudoxanthomonas suwonensis 11-1)

1e-76

516) capI
( YP_006370132.1 )

NAD-dependent epimerase/dehydratase

NC_017956
(Tistrella mobilis KA081020-065)

1e-76

517) SUB1028
( YP_002562353.1 )

nucleotide sugar epimerase

NC_012004
(Streptococcus uberis 0140J)

2e-76

518) Msil_1168
( YP_002361499.1 )

NAD-dependent epimerase/dehydratase

NC_011666
(Methylocella silvestris BL2)

2e-76

519) PRU_1542
( YP_003574844.1 )

polysaccharide biosynthesis protein

NC_014033
(Prevotella ruminicola 23)

2e-76

520) Mesop_2112
( YP_004610685.1 )

NAD-dependent epimerase/dehydratase

NC_015675
(Mesorhizobium opportunistum WSM2075)

3e-76

521) Bache_0967
( YP_004160567.1 )

NAD-dependent epimerase/dehydratase

NC_014933
(Bacteroides helcogenes P 36-108)

3e-76

522) Odosp_0323
( YP_004251602.1 )

UDP-glucuronate 4-epimerase

NC_015160
(Odoribacter splanchnicus DSM 220712)

6e-76

523) Cycma_3085
( YP_004775044.1 )

NAD-dependent epimerase/dehydratase

NC_015914
(Cyclobacterium marinum DSM 745)

7e-76

524) Dred_3026
( YP_001114354.1 )

NAD-dependent epimerase/dehydratase

NC_009253
(Desulfotomaculum reducens MI-1)

1e-75

525) wcaG
( YP_001939137.1 )

nucleoside-diphosphate-sugar epimerase

NC_010794
(Methylacidiphilum infernorum V4)

1e-75

526) HMPREF1038_00405
( YP_006742605.1 )

UDP-glucuronate 5'-epimerase

NC_018630
(Streptococcus pneumoniae gamPNI0373)

2e-75

527) gla
( YP_006062001.1 )

putative epimerase

NC_017591
(Streptococcus pneumoniae INV104)

2e-75

528) SPP_0392
( YP_002737608.1 )

UDP-glucuronate 5'-epimerase (UDP-glucuronic acidepimerase)

NC_012467
(Streptococcus pneumoniae P1031)

2e-75

529) ELI_1795
( YP_003959742.1 )

UDP-glucuronate 5'-epimerase

NC_014624
(Eubacterium limosum KIST612)

9e-76

530) Spiaf_0061
( YP_005473877.1 )

nucleoside-diphosphate-sugar epimerase

NC_017098
(Spirochaeta africana DSM 8902)

2e-75

531) RC1_0233
( YP_002296495.1 )

capsular polysaccharide biosynthesis protein I

NC_011420
(Rhodospirillum centenum SW)

2e-75

532) Fisuc_0962
( YP_003249049.1 )

NAD-dependent epimerase/dehydratase

NC_013410
(Fibrobacter succinogenes S85)

4e-75

533) FSU_1408
( YP_005821415.1 )

nucleotide sugar epimerase

NC_017448
(Fibrobacter succinogenes S85)

4e-75

534) ELI_13270
( YP_459543.1 )

nucleotide sugar epimerase

NC_007722
(Erythrobacter litoralis HTCC2594)

5e-75

535) STP_0894
( YP_004479014.1 )

nucleotide sugar epimerase

NC_015558
(Streptococcus parauberis KCTC 11537)

1e-74

536) amb2159
( YP_421522.1 )

nucleoside-diphosphate-sugar epimerase

NC_007626
(Magnetospirillum magneticum AMB-1)

6e-75

537) Hbal_1809
( YP_003060192.1 )

NAD-dependent epimerase/dehydratase

NC_012982
(Hirschia baltica ATCC 59814)

2e-74

538) CV_0819
( NP_900489.1 )

nucleotide sugar epimerase

NC_005085
(Chromobacterium violaceum ATCC 12472)

2e-74

539) Dfer_0063
( YP_003084499.1 )

NAD-dependent epimerase/dehydratase

NC_013037
(Dyadobacter fermentans DSM 18053)

3e-74

540) BbuZS7_0450
( YP_002374955.1 )

WbnF

NC_011728
(Borrelia burgdorferi ZS7)

3e-74

541) Rpdx1_4240
( YP_004110525.1 )

NAD-dependent epimerase/dehydratase

NC_014834
(Rhodopseudomonas palustris DX-1)

4e-74

542) BH0444
( YP_001883873.1 )

UDP-glucuronate 4-epimerase

NC_010673
(Borrelia hermsii DAH)

4e-74

543) BB_0444
( NP_212578.1 )

nucleotide sugar epimerase

NC_001318
(Borrelia burgdorferi B31)

6e-74

544) BbuJD1_0444
( YP_005805542.1 )

WbnF

NC_017403
(Borrelia burgdorferi JD1)

6e-74

545) BbuN40_0444
( YP_005806634.1 )

WbnF

NC_017418
(Borrelia burgdorferi N40)

6e-74

546) TM1040_3776
( YP_611171.1 )

NAD-dependent epimerase/dehydratase

NC_008042
(Ruegeria sp. TM1040)

7e-74

547) Cthe_1361
( YP_001037786.1 )

NAD-dependent epimerase/dehydratase

NC_009012
(Clostridium thermocellum ATCC 27405)

1e-73

548) Clo1313_0892
( YP_005687411.1 )

NAD-dependent epimerase/dehydratase

NC_017304
(Clostridium thermocellum DSM 1313)

1e-73

549) BbiDN127_0446
( YP_004777683.1 )

NAD dependent epimerase/dehydratase family protein

NC_015921
(Borrelia bissettii DN127)

2e-73

550) Q7M_449
( YP_006272380.1 )

Nucleotide sugar epimerase

NC_017808
(Borrelia crocidurae Achema)

3e-73

551) BT0444
( YP_945442.1 )

UDP-glucuronate 4-epimerase

NC_008710
(Borrelia turicatae 91E135)

3e-73

552) wbnF
( NP_644209.1 )

nucleotide sugar epimerase

NC_003919
(Xanthomonas axonopodis 306)

3e-73

553) XAC29_19825
( YP_007638319.1 )

nucleotide sugar epimerase

NC_020800
(Xanthomonas axonopodis Xac29-1)

3e-73

554) wcaG
( YP_007648393.1 )

Nucleoside-diphosphate-sugar epimerase

NC_020815
(Xanthomonas citri Aw12879)

3e-73

555) BDU_442
( YP_002222093.1 )

nucleotide sugar epimerase

NC_011229
(Borrelia duttonii Ly)

4e-73

556) gla
( YP_003374638.1 )

nucleoside-diphosphate-sugar epimerases protein

NC_013722
(Xanthomonas albilineans GPE PC73)

4e-73

557) L144_02165
( YP_008407619.1 )

WbnF

NC_022048
(Borrelia burgdorferi CA382)

4e-73

558) I871_02340
( YP_008415590.1 )

UDP-glucuronic acid epimerase

NC_022079
(Borrelia miyamotoi LB-2001)

5e-73

559) wbnF
( YP_004853339.1 )

nucleotide sugar epimerase

NC_016010
(Xanthomonas axonopodis F1)

5e-73

560) wbnF
( YP_365752.1 )

nucleotide sugar epimerase

NC_007508
(Xanthomonas campestris 85-10)

5e-73

561) LSL_0980
( YP_535871.1 )

UDP-glucuronate 4-epimerase

NC_007929
(Lactobacillus salivarius UCC118)

6e-73

562) Mpop_3216
( YP_001925902.1 )

NAD-dependent epimerase/dehydratase

NC_010725
(Methylobacterium populi BJ001)

6e-73

563) Vpar_0682
( YP_003311645.1 )

NAD-dependent epimerase/dehydratase

NC_013520
(Veillonella parvula DSM 2008)

8e-73

564) A9601_13971
( YP_001009788.1 )

nucleotide sugar epimerase

NC_008816
(Prochlorococcus marinus AS9601)

1e-72

565) RD1_B0043
( YP_771860.1 )

UDP-glucuronate 5'-epimerase

NC_008387
(Roseobacter denitrificans OCh 114)

1e-72

566) BRE_445
( YP_002222902.1 )

nucleotide sugar epimerase

NC_011244
(Borrelia recurrentis A1)

9e-73

567) BpOF4_06525
( YP_003426255.1 )

NAD dependent epimerase/dehydratase family protein

NC_013791
(Bacillus pseudofirmus OF4)

2e-72

568) CC1_04390
( YP_007768776.1 )

Nucleoside-diphosphate-sugar epimerases

NC_021009
(Coprococcus catus GD/7)

2e-72

569) Mnod_4525
( YP_002499696.1 )

NAD-dependent epimerase/dehydratase

NC_011894
(Methylobacterium nodulans ORS 2060)

2e-72

570) SMD_4144
( YP_006186810.1 )

nucleotide sugar epimerase

NC_017671
(Stenotrophomonas maltophilia D457)

3e-72

571) PP1Y_AT8131
( YP_004533560.1 )

UDP-glucuronate 5'-epimerase

NC_015580
(Novosphingobium sp. PP1Y)

4e-72

572) Oter_0892
( YP_001817780.1 )

NAD-dependent epimerase/dehydratase

NC_010571
(Opitutus terrae PB90-1)

4e-72

573) HN6_00804
( YP_005863867.1 )

UDP-glucuronate 4-epimerase

NC_017481
(Lactobacillus salivarius CECT 5713)

4e-72

574) BgCN_0457
( YP_006871132.1 )

nucleotide sugar epimerase

NC_018747
(Borrelia garinii NMJW1)

4e-72

575) CC_2378
( NP_421181.1 )

NAD-dependent epimerase/dehydratase

NC_002696
(Caulobacter crescentus CB15)

5e-72

576) CCNA_02463
( YP_002517836.1 )

UDP-N-acetylglucosamine 4-epimerase

NC_011916
(Caulobacter crescentus NA1000)

5e-72

577) lspL
( YP_003069288.1 )

UDP-glucuronate 5'-epimerase

NC_012988
(Methylobacterium extorquens DM4)

5e-72

578) lspL
( YP_002964257.1 )

UDP-glucuronate 5'-epimerase

NC_012808
(Methylobacterium extorquens AM1)

6e-72

579) Cseg_0088
( YP_003591233.1 )

NAD-dependent epimerase/dehydratase

NC_014100
(Caulobacter segnis ATCC 21756)

6e-72

580) Mext_3027
( YP_001640487.1 )

NAD-dependent epimerase/dehydratase

NC_010172
(Methylobacterium extorquens PA1)

1e-71

581) Mchl_3251
( YP_002422016.1 )

NAD-dependent epimerase/dehydratase

NC_011757
(Methylobacterium chloromethanicum CM4)

8e-72

582) KK9_0460
( YP_006203134.1 )

Nucleotide sugar epimerase

NC_017717
(Borrelia garinii BgVir)

1e-71

583) gAE4
( YP_004670598.1 )

UDP-glucuronate 4-epimerase 4

NC_015713
(Simkania negevensis Z)

2e-71

584) BafHLJ01_0486
( YP_006931620.1 )

nucleotide sugar epimerase

NC_018887
(Borrelia afzelii HLJ01)

2e-71

585) XFLM_00665
( YP_005999521.1 )

NAD-dependent epimerase/dehydratase

NC_017562
(Xylella fastidiosa GB514)

2e-71

586) XfasM23_1398
( YP_001830090.1 )

NAD-dependent epimerase/dehydratase

NC_010577
(Xylella fastidiosa M23)

2e-71

587) wbnF
( NP_779514.1 )

nucleotide sugar epimerase

NC_004556
(Xylella fastidiosa Temecula1)

2e-71

588) Sala_1553
( YP_616599.1 )

NAD-dependent epimerase/dehydratase

NC_008048
(Sphingopyxis alaskensis RB2256)

2e-71

589) XOC_4226
( YP_005630470.1 )

nucleotide sugar epimerase

NC_017267
(Xanthomonas oryzae BLS256)

2e-71

590) XC_3937
( YP_244996.1 )

nucleotide sugar epimerase

NC_007086
(Xanthomonas campestris 8004)

3e-71

591) wbnF
( NP_639193.1 )

nucleotide sugar epimerase

NC_003902
(Xanthomonas campestris ATCC 33913)

3e-71

592) BafPKo_0455
( YP_005592657.1 )

NAD dependent epimerase/dehydratase family protein

NC_017238
(Borrelia afzelii PKo)

4e-71

593) BG0452
( YP_072887.1 )

nucleotide sugar epimerase

NC_006156
(Borrelia garinii PBi)

4e-71

594) XCR_0436
( YP_005635479.1 )

nucleotide sugar epimerase

NC_017271
(Xanthomonas campestris 756C)

4e-71

595) M446_3211
( YP_001770051.1 )

NAD-dependent epimerase/dehydratase

NC_010511
(Methylobacterium sp. 4-46)

1e-70

596) XOO_0469
( YP_449498.1 )

nucleotide sugar epimerase

NC_007705
(Xanthomonas oryzae MAFF 311018)

7e-71

597) PXO_02926
( YP_001915820.1 )

nucleotide sugar epimerase

NC_010717
(Xanthomonas oryzae PXO99A)

7e-71

598) wbnF
( YP_199141.1 )

nucleotide sugar epimerase

NC_006834
(Xanthomonas oryzae KACC10331)

9e-71

599) gla
( YP_001905442.1 )

ly UDP-glucuronate 4-epimerase

NC_010688
(Xanthomonas campestris B100)

1e-70

600) Zymop_0327
( YP_004661520.1 )

NAD-dependent epimerase/dehydratase

NC_015709
(Zymomonas mobilis ATCC 29192)

1e-70

601) PB2503_07222
( YP_003854652.1 )

NAD-dependent epimerase/dehydratase

NC_014414
(Parvularcula bermudensis HTCC2503)

1e-70

602) AZL_021990
( YP_003449381.1 )

NAD-dependent epimerase/dehydratase

NC_013854
(Azospirillum sp. B510)

2e-70

603) MmarC5_0496
( YP_001097025.1 )

UDP-glucuronate 5'-epimerase

NC_009135
(Methanococcus maripaludis C5)

2e-70

604) AZOLI_2265
( YP_005039701.1 )

UDP-glucose/glucuronate epimerase

NC_016622
(Azospirillum lipoferum 4B)

2e-70

605) Xfasm12_1471
( YP_001776020.1 )

nucleotide sugar epimerase

NC_010513
(Xylella fastidiosa M12)

1e-69

606) XF2279
( NP_299558.1 )

nucleotide sugar epimerase

NC_002488
(Xylella fastidiosa 9a5c)

8e-70

607) BurJV3_4007
( YP_004794545.1 )

UDP-glucuronate 4-epimerase

NC_015947
(Stenotrophomonas maltophilia JV3)

2e-69

608) Mmar10_2492
( YP_757716.1 )

NAD-dependent epimerase/dehydratase

NC_008347
(Maricaulis maris MCS10)

3e-69

609) gAE4
( YP_004650942.1 )

UDP-glucuronate 4-epimerase 4

NC_015702
(Parachlamydia acanthamoebae UV-7)

3e-69

610) SELR_17160
( YP_005433447.1 )

putative NAD-dependent epimerase/dehydratase

NC_017068
(Selenomonas ruminantium TAM6421)

1e-68

611) galE3
( YP_005369912.1 )

NAD-dependent epimerase/dehydratase

NC_017030
(Corallococcus coralloides DSM 2259)

1e-68

612) Smal_3963
( YP_002030345.1 )

NAD-dependent epimerase/dehydratase

NC_011071
(Stenotrophomonas maltophilia R551-3)

1e-68

613) Metok_0054
( YP_004575830.1 )

UDP-glucuronate 5'-epimerase

NC_015636
(Methanothermococcus okinawensis IH1)

4e-68

614) Smlt4612
( YP_001974242.1 )

UDP-glucuronic acid epimerase

NC_010943
(Stenotrophomonas maltophilia K279a)

6e-68

615) MJ_1055
( NP_248049.1 )

capsular polysaccharide biosynthesis protein I

NC_000909
(Methanocaldococcus jannaschii DSM 2661)

1e-67

616) SLG_15840
( YP_004834716.1 )

hypothetical protein

NC_015976
(Sphingobium sp. SYK-6)

2e-67

617) ACMV_26790
( YP_004284908.1 )

polysaccharide biosynthesis protein

NC_015186
(Acidiphilium multivorum AIU301)

4e-67

618) CLS_25740
( YP_007849953.1 )

Nucleoside-diphosphate-sugar epimerases

NC_021047
(Clostridium saccharolyticum K10)

4e-67

619) wcaG
( YP_003710181.1 )

NAD-dependent epimerase/dehydratase

NC_014225
(Waddlia chondrophila WSU 86-1044)

2e-66

620) MXAN_3987
( YP_632167.1 )

NAD-dependent epimerase/dehydratase

NC_008095
(Myxococcus xanthus DK 1622)

2e-66

621) MYSTI_03928
( YP_007360918.1 )

NAD-dependent epimerase/dehydratase

NC_020126
(Myxococcus stipitatus DSM 14675)

3e-66

622) lspL
( YP_004688965.1 )

UDP-glucoronate 5'-epimerase LspL

NC_015729
(Roseobacter litoralis Och 149)

5e-66

623) Spirs_4248
( YP_003805916.1 )

NAD-dependent epimerase/dehydratase

NC_014364
(Spirochaeta smaragdinae DSM 11293)

5e-66

624) Acry_2353
( YP_001235466.1 )

NAD-dependent epimerase/dehydratase

NC_009484
(Acidiphilium cryptum JF-5)

6e-65

625) Maeo_0415
( YP_001324613.1 )

NAD-dependent epimerase/dehydratase

NC_009635
(Methanococcus aeolicus Nankai-3)

7e-65

626) Mevan_0412
( YP_001322932.1 )

NAD-dependent epimerase/dehydratase

NC_009634
(Methanococcus vannielii SB)

7e-65

627) Psesu_2853
( YP_004147909.1 )

NAD-dependent epimerase/dehydratase

NC_014924
(Pseudoxanthomonas suwonensis 11-1)

7e-65

628) JCM7686_0115
( YP_008402983.1 )

UDP-glucuronate 5'-epimerase

NC_022041
(Paracoccus aminophilus JCM 7686)

1e-64

629) SLG_34220
( YP_004836554.1 )

putative NAD-dependent epimerase/dehydratase

NC_015976
(Sphingobium sp. SYK-6)

4e-64

630) Caul_4825
( YP_001686443.1 )

NAD-dependent epimerase/dehydratase

NC_010338
(Caulobacter sp. K31)

4e-64

631) Desti_2739
( YP_006447679.1 )

nucleoside-diphosphate-sugar epimerase

NC_018025
(Desulfomonile tiedjei DSM 6799)

2e-63

632) GbCGDNIH1_0736
( YP_744557.1 )

UDP-N-acetylglucosamine 4-epimerase

NC_008343
(Granulibacter bethesdensis CGDNIH1)

2e-63

633) Metig_0228
( YP_004483850.1 )

UDP-glucuronate 4-epimerase

NC_015562
(Methanotorris igneus Kol 5)

9e-63

634) Bresu_1138
( YP_003818073.1 )

NAD-dependent epimerase/dehydratase

NC_014375
(Brevundimonas subvibrioides ATCC 15264)

2e-62

635) AZOBR_140024
( YP_005031692.1 )

UDP-glucose/glucuronate epimerase

NC_016617
(Azospirillum brasilense Sp245)

6e-62

636) Bind_2656
( YP_001833722.1 )

NAD-dependent epimerase/dehydratase

NC_010581
(Beijerinckia indica ATCC 9039)

6e-62

637) Ilyop_0396
( YP_003966532.1 )

NAD-dependent epimerase/dehydratase

NC_014632
(Ilyobacter polytropus DSM 2926)

8e-62

638) Metin_1457
( YP_003617069.1 )

NAD-dependent epimerase/dehydratase

NC_014122
(Methanocaldococcus infernus ME)

2e-61

639) Zmob_0362
( YP_005620661.1 )

NAD-dependent epimerase/dehydratase

NC_017262
(Zymomonas mobilis ATCC 10988)

7e-61

640) ZZ6_0360
( YP_006517783.1 )

UDP-glucuronate 4-epimerase

NC_018145
(Zymomonas mobilis ATCC 29191)

1e-60

641) Za10_0357
( YP_003225492.1 )

NAD-dependent epimerase/dehydratase

NC_013355
(Zymomonas mobilis NCIMB 11163)

1e-60

642) ZMO0941
( YP_162676.1 )

NAD-dependent epimerase/dehydratase

NC_006526
(Zymomonas mobilis ZM4)

1e-60

643) Flexsi_1426
( YP_004603644.1 )

UDP-glucuronate 4-epimerase

NC_015672
(Flexistipes sinusarabici DSM 4947)

3e-60

644) pc0079
( YP_007078.1 )

UDP-glucuronat epimerase

NC_005861
(Candidatus Protochlamydia amoebophila UWE25)

4e-60

645) Geob_2923
( YP_002538367.1 )

NAD-dependent epimerase/dehydratase

NC_011979
(Geobacter daltonii FRC-32)

4e-60

646) B932_0956
( YP_006983476.1 )

UDP-N-acetylglucosamine 4-epimerase

NC_019396
(Gluconobacter oxydans H24)

1e-59

647) Ilyop_2446
( YP_003968553.1 )

NAD-dependent epimerase/dehydratase

NC_014633
(Ilyobacter polytropus DSM 2926)

4e-59

648) Gura_2302
( YP_001231054.1 )

NAD-dependent epimerase/dehydratase

NC_009483
(Geobacter uraniireducens Rf4)

1e-58

649) LILAB_28080
( YP_004668581.1 )

NAD-dependent epimerase/dehydratase family protein

NC_015711
(Myxococcus fulvus HW-1)

1e-58

650) Riean_1341
( YP_004046004.1 )

naD-dependent epimerase/dehydratase

NC_014738
(Riemerella anatipestifer ATCC 11845)

1e-56

651) RA0C_1617
( YP_005395047.1 )

naD-dependent epimerase/dehydratase

NC_017045
(Riemerella anatipestifer ATCC 11845)

1e-56

652) G148_0261
( YP_007355260.1 )

Nucleoside-diphosphate-sugar epimerase

NC_020125
(Riemerella anatipestifer RA-CH-2)

1e-56

653) RIA_0873
( YP_006017353.1 )

Nucleoside-diphosphate-sugar epimerase

NC_017569
(Riemerella anatipestifer RA-GD)

1e-56

654) CL3_12070
( YP_007809650.1 )

Nucleoside-diphosphate-sugar epimerases

NC_021024
(butyrate-producing bacterium SM4/1)

2e-56

655) B739_0545
( YP_006723048.1 )

Nucleoside-diphosphate-sugar epimerase

NC_018609
(Riemerella anatipestifer RA-CH-1)

2e-56

656) Mpsy_2511
( YP_006924083.1 )

NAD-dependent epimerase/dehydratase

NC_018876
(Methanolobus psychrophilus R15)

1e-55

657) BHWA1_02667
( YP_002720657.1 )

NAD-dependent epimerase/dehydratase

NC_012226
(Brachyspira hyodysenteriae WA1)

2e-55

658) THEYE_A1375
( YP_002249176.1 )

nucleotide sugar epimerase WbnF

NC_011296
(Thermodesulfovibrio yellowstonii DSM 11347)

2e-55

659) Sterm_3095
( YP_003309868.1 )

NAD-dependent epimerase/dehydratase

NC_013517
(Sebaldella termitidis ATCC 33386)

8e-55

660) Thein_1217
( YP_004626049.1 )

NAD-dependent epimerase/dehydratase

NC_015681
(Thermodesulfatator indicus DSM 15286)

3e-54

661) Ilyop_2745
( YP_003968848.1 )

NAD-dependent epimerase/dehydratase

NC_014633
(Ilyobacter polytropus DSM 2926)

5e-50

662) SYO3AOP1_0164
( YP_001930363.1 )

NAD-dependent epimerase/dehydratase

NC_010730
(Sulfurihydrogenibium sp. YO3AOP1)

5e-50

663) nse
( NP_213918.1 )

nucleotide sugar epimerase

NC_000918
(Aquifex aeolicus VF5)

7e-50

664) Solca_3570
( YP_006257750.1 )

nucleoside-diphosphate-sugar epimerase

NC_017770
(Solitalea canadensis DSM 3403)

8e-50

• Sequence Alignments

1) capI in NC_012121


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  474 bits (1786),  Expect = 3e-135, Method: Compositional matrix adjust.
 Identities = 277/332 (84%), Positives = 310/332 (94%), Gaps = 0/332 (0%)

Query  1    MRILITGAAGFIGSHLAKKLISQGYEVIGVDNINDYYDPQLKEDRLASIGKDNFKFYKTD  60
            M+ILITG+AGFIGSHLAKKLI QG  VIGVD+INDYY   LKEDRL SIGK+NF F K  
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  61   LENFGELNAIFIKNKPEVVVNLAAQAGVRYSLENPMAYIDSNIVGFVNILECCRHHEVKH  120
            LEN+++L+ +F+ ++PEVVVNLAAQAGVRYS+ENP +YIDSNIVGF+NILEC RH ++++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  121  LIYASSSSVYGANTSKPFATTDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180
            LIYASSSSVYGANTSKPF+T+DNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  181  VYGPWGRPDMALFKFTKAIVNDEEIDVYNHGNMMRDFTYVDDIVEAISRLLKRPAQPNPE  240
            VYGPWGRPDMALFKFTKAIVND+ IDVYNHGNMMRDFTYVDDIVEAISRL+K+PA PN E
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  241  WSGDNPDPSSSYAPYKIYNIGNNSPVRLMEFVEAIENKLDKTAKKNYMDLQPGDVPETYA  300
            WSG +PDP+SSYAPYK+YNIGNNSPVRLMEFVEAIENKL+K A+KNYMDLQPGDVPETYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  301  NVDDLYNNIDFKPETTIQDGVNKFIDWYLNYY  332
            NVDDL+ +IDFKPETTIQDGVNKF+DWYL+YY
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

2) capI in NC_011999


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  435 bits (1640),  Expect = 1e-123, Method: Compositional matrix adjust.
 Identities = 253/332 (77%), Positives = 301/332 (91%), Gaps = 0/332 (0%)

Query  1    MKILVTGIAGFIGSNLAKKLKEKGHEVFGIDNLNNYYSVELKKDRLSKFLNNEFKNYEIN  60
            MKIL+TG AGFIGS+LAKKL  +GH V+G+D++N+YYSV LK DRL  + +++F    ++
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  61   LENYEAVKKVFEQEKPEVVINLAAQAGVRYSLENPFTYIQSNVNGFMSILEACRHNNVKN  120
            LENY+ + KVF +E+PEVV+NLAAQAGVRYS+ENP TYI+SN+ GFM+ILE  RH N++N
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  121  LIYASSSSVYGANTSLPFSTSDNIDHPISLYAATKKSNELMAHTYSHLFNLPTTGLRFFT  180
            LIYASSSSVYGANTS PFSTSDNIDHP+SLYAATKKSNELMAHTYSHL+NLPTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  181  VYGPWGRPDMALFKFTKNILNNESIDVYNNGNMMRDFTYVDDIVEAISRLVERPAQPNKE  240
            VYGPWGRPDMALFKFTK I+N+++IDVYN+GNMMRDFTYVDDIVEAISRLV +PA PNKE
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  241  WSGDNPSPDSSYAPYKVYNIGNNAPVKLMEFIEAIETRTGIEAKKNFMELQAGDVPQTYA  300
            WSG +P P+SSYAPYKVYNIGNN+PV+LMEF+EAIE + G EA+KN+M+LQ+GDVP+TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  301  NVDDLFRDIDFKPQTNIQDGVNNFVDWYMNYY  332
            NVDDLFRDIDFKP+T IQDGVN+FVDWY++YY
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

3) GWCH70_3260 in NC_012793


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  413 bits (1555),  Expect = 5e-117, Method: Compositional matrix adjust.
 Identities = 224/332 (68%), Positives = 292/332 (88%), Gaps = 0/332 (0%)

Query  1    MNILVTGAAGFIGSHLSKRLLNEGYEVIGIDNINDYYDPKLKWDRLEWIKHPKFKFEKVS  60
            M+IL+TG+AGFIGSHL+K+L+++G  VIG+D+INDYY   LK DRL  I   +F F+KV 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  61   LEDRERINNIFIQYKPAIVVNLAAQAGVRYSLVNPHAYIDSNIVGFMNILEACRHYNVGH  120
            LE+ + ++++F++ +P +VVNLAAQAGVRYS+ NP++YIDSNIVGFMNILE  RH+N+ +
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  121  LIYASSSSVYGANTKMPFSVHDNVDHPVSLYAATKKANELMAHTYSHLYGLPTTGLRFFT  180
            LIYASSSSVYGANT  PFS  DN+DHP+SLYAATKK+NELMAHTYSHLY LPTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  181  VYGPWGRPDMALFLFTKAIINGEPIKVFNNGNMMRDFTYIDDIVESIYRLIQKKPKPNPN  240
            VYGPWGRPDMALF FTKAI+N+++I V+N+GNMMRDFTY+DDIVE+I RL++K + PN +
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  241  WDGKNPDPGTSYAPYRVYNIGNSNPVNLMDFITAIEEKLGIEAKKEFLPLQAGDVPATYA  300
            W G +PDPG+SYAPY+VYNIGN++PV LM+F+ AIE+KLG EA+K+++ LQ+GDVP TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  301  DVDDLYNEINFRPQTSIKEGVSKFIDWYLDYY  332
            +VDDL+ +I+F+P+T+I++GV+KF+DWYL+YY
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

4) capI in NC_020055


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  385 bits (1447),  Expect = 2e-108, Method: Compositional matrix adjust.
 Identities = 217/334 (65%), Positives = 285/334 (86%), Gaps = 1/334 (0%)

Query  1    MKVLVTGAAGFIGFHLSKRLLAEGHEVVGLDILNDYYDVNVKKNRLKQIEDHEKFTFAYM  60
            MK+L+TG+AGFIG HL+K+L+ +GH V+G+D +NDYY V++K +RLK I + E+FTF  +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  61   DMADREAMPKLFAEHKFTHVVNLAAQAGVRYSLENPQAYIDSNVVGYMNILEGCRHNGVE  120
             + + + ++K+F +++   VVNLAAQAGVRYS+ENP++YIDSN+VG+MNILE  RH  ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGLNTSMPFSIHDNVDHPISMYAATKKSNELMAHSYSHLFNIPTTGLRFF  180
            +L+YASSSSVYG NTS PFS  DN+DHP+S+YAATKKSNELMAH+YSHL+N+PTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFLFTKAIVDGKPINVFNHGKMLRDFTYIDDIVEGVVRVMKNPAKPNP  240
            TVYGPWGRPDMALF FTKAIV++++I+V+NHG+M+RDFTY+DDIVE++ R++K+PA PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWSGDAPDPGTSPAPFRIYNIGNNQPTELMRYIEVLEECLGKKAEKNMMPLQAGDVPLTY  300
            +WSG  PDPG+S AP+++YNIGNN P  LM ++E +E+ LGK A KN M LQ+GDVP TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ANVDDLVRDVDFKPCTTIEEGIVKFVDWYKEYYK  334
            ANVDDL RD+DFKP TTI++G+ KFVDWY EYYK
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

5) Maqu_1687 in NC_008740


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  384 bits (1445),  Expect = 2e-108, Method: Compositional matrix adjust.
 Identities = 211/334 (64%), Positives = 282/334 (85%), Gaps = 1/334 (0%)

Query  1    MKILVTGTAGFIGSHLAHRLLDRGDEVIGVDNVNDYYDVNLKEARLARLLNKPGFTEVRQ  60
            MKIL+TGTAGFIGSHLA +L+ +G+ VIGVD++NDYY V+LKE RL + + K  FT  + 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRL-KSIGKENFTFNKV  59

Query  61   DVADREAMEAVFREHKPERVVHLAAQAGVRYSLENPHAYVDANLVGFMNILEGCRHNEVK  120
             + + + +  VF +++PE VV+LAAQAGVRYS+ENP++Y+D+N+VGFMNILE  RH +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGANETMPFSVHDNVDHPLSLYAASKKANELMAHTYSHLYNLPTTGLRFF  180
            +L+YASSSSVYGAN + PFS  DN+DHPLSLYAA+KK+NELMAHTYSHLYNLPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFIFTKKILAGEPIDVFNHGHHKRDFTYIDDIVEGVIRTLDNVAQPNQ  240
            TVYGPWGRPDMALF FTK I+ +++IDV+NHG+  RDFTY+DDIVE++ R + + A PN+
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWSGAQPDPGTSKGPYRIYNIGSNNPVELSRFIEIIEERVGKKAEKNLLPLQPGDVPATY  300
            +WSGA+PDPG+S +PY++YNIG+N+PV L  F+E IE+++GK A KN + LQPGDVP TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ANVDDLINDVGYKPSTTVEEGIANFVDWYRDFYN  334
            ANVDDL+ D+++KP TT+++G+ +FVDWY ++Y+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

6) uge in NC_011146


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  382 bits (1437),  Expect = 1e-107, Method: Compositional matrix adjust.
 Identities = 212/333 (64%), Positives = 285/333 (86%), Gaps = 1/333 (0%)

Query  3    KILVTGAAGFIGSHLSHRLLAKGHEVVGLDNLNDYYDVSLKEGRLARLEGKPGFRLVRMN  62
            KIL+TG+AGFIGSHL+ +L+ +GH V+G+D++NDYY VSLKE+RL  + GK  F + +++
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKVK  60

Query  63   LEDREGIARLFAAEKFDSVVNLAAQAGVRYSIQNPYAYIDSNISGFINILEGCRHNKVKH  122
            LE+ ++++++F  E+ + VVNLAAQAGVRYSI+NP +YIDSNI GF+NILE  RH ++++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  123  LVYASSSSVYGANTTMPFSVHHNVDHPVSLYAATKKANELMAHTYSSLYGLPTTGLRFFT  182
            L+YASSSSVYGANT+ PFS  +N+DHP+SLYAATKK+NELMAHTYS LY LPTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  183  VYGPWGRPDMALFLFTKAILEGKPIDVFNYGKMQRDFTFVDDIVEGVSRVIDSVPPGEAG  242
            VYGPWGRPDMALF FTKAI+++++IDV+N G+M RDFT+VDDIVE++SR++   ++ +  
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  243  WSGATPDPGTSYAPYKIYNIGNNNPVELLRFIEVLEKALGKEAQKNLLPIQAGDVPATYA  302
            WSGA PDPG+SYAPYK+YNIGNN+PV L+ F+E +E+ LGKEA+KN + +Q+GDVP TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  303  DVDDLMRDVGFKPATSIEDGIARFVAWYRDFYK  335
            +VDDL RD++FKP T+I+DG+ +FV WY ++YK
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

7) uge in NC_017454


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  382 bits (1436),  Expect = 1e-107, Method: Compositional matrix adjust.
 Identities = 210/332 (64%), Positives = 279/332 (85%), Gaps = 1/332 (0%)

Query  3    SILVTGAAGFIGFHLTKRLLDRGDRVVGLDNLNDYYDVNLKLDRLRQLEGREGFSFVRTS  62
             IL+TG+AGFIG HL+K+L+ +G+ V+G+D++NDYY V+LK DRL+ + G+E F+F +  
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKVK  60

Query  63   LADRPALEDLFAGQRFDVVVNLAAQAGVRYSITNPHAYVDSNLVGFINILEGCRHHGVKH  122
            L +   L  +F +++ +VVVNLAAQAGVRYSI NP++Y+DSN+VGF+NILE  RH  +++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  123  LVYASSSSVYGANTAMPFSIHHNVDHPVSLYAATKKANELMAHTYSSLYGLPTTGLRFFT  182
            L+YASSSSVYGANT+ PFS  +N+DHP+SLYAATKK+NELMAHTYS LY LPTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  183  VYGPWGRPDMALFLFTKAILEGRPIDVYNFGKMQRDFTYVDDIVEGVTRVMDRTPEPNPA  242
            VYGPWGRPDMALF FTKAI+++++IDVYN G+M RDFTYVDDIVE+++R++ + + PN  
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  243  WSGARPDPGTSYAPYRIYNIGNNNPVELLAFIEAIEQNLGITAQKNLLPLQAGDVPATYA  302
            WSGA PDPG+SYAPY++YNIGNN+PV L+ F+EAIE++LG  A+KN + LQ+GDVP TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  303  DVDDLMNDVGFKPATPIGEGIERFVEWYRGYY  334
            +VDDL  D++FKP T I +G+++FV+WY  YY
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

8) uge in NC_002939


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  382 bits (1436),  Expect = 1e-107, Method: Compositional matrix adjust.
 Identities = 210/332 (64%), Positives = 279/332 (85%), Gaps = 1/332 (0%)

Query  3    SILVTGAAGFIGFHLTKRLLDRGDRVVGLDNLNDYYDVNLKLDRLRQLEGREGFSFVRTS  62
             IL+TG+AGFIG HL+K+L+ +G+ V+G+D++NDYY V+LK DRL+ + G+E F+F +  
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKVK  60

Query  63   LADRPALEDLFAGQRFDVVVNLAAQAGVRYSITNPHAYVDSNLVGFINILEGCRHHGVKH  122
            L +   L  +F +++ +VVVNLAAQAGVRYSI NP++Y+DSN+VGF+NILE  RH  +++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  123  LVYASSSSVYGANTAMPFSIHHNVDHPVSLYAATKKANELMAHTYSSLYGLPTTGLRFFT  182
            L+YASSSSVYGANT+ PFS  +N+DHP+SLYAATKK+NELMAHTYS LY LPTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  183  VYGPWGRPDMALFLFTKAILEGRPIDVYNFGKMQRDFTYVDDIVEGVTRVMDRTPEPNPA  242
            VYGPWGRPDMALF FTKAI+++++IDVYN G+M RDFTYVDDIVE+++R++ + + PN  
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  243  WSGARPDPGTSYAPYRIYNIGNNNPVELLAFIEAIEQNLGITAQKNLLPLQAGDVPATYA  302
            WSGA PDPG+SYAPY++YNIGNN+PV L+ F+EAIE++LG  A+KN + LQ+GDVP TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  303  DVDDLMNDVGFKPATPIGEGIERFVEWYRGYY  334
            +VDDL  D++FKP T I +G+++FV+WY  YY
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

9) HP15_2023 in NC_017506


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  381 bits (1431),  Expect = 3e-107, Method: Compositional matrix adjust.
 Identities = 212/334 (64%), Positives = 278/334 (84%), Gaps = 1/334 (0%)

Query  1    MKILVTGTAGFIGSHLAHRLLDRGDEVIGVDNVNDYYDVNLKEARLKRLTDKAGFTEVRQ  60
            MKIL+TGTAGFIGSHLA +L+ +G+ VIGVD++NDYY V+LKE RLK + +K  FT  + 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  61   DVADRAAMEALFAEHKPERVVHLAAQAGVRYSIENPHAYVDANLVGFMNILEGCRHNKVK  120
             + +   +  +F +++PE VV+LAAQAGVRYSIENP++Y+D+N+VGFMNILE  RH +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGANETMPFSVHDNVDHPLSLYAASKKANELMAHTYSHLYNLPTTGLRFF  180
            +L+YASSSSVYGAN + PFS  DN+DHPLSLYAA+KK+NELMAHTYSHLYNLPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFIFTKKILAGEPIDVFNHGHHRRDFTYIDDIVEGVIRTLDHVAEPNG  240
            TVYGPWGRPDMALF FTK I+ +++IDV+NHG+  RDFTY+DDIVE++ R +   A PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  EWSGATPDPGTSKAPYRLYNIGSNNPVELSRFIEIIEERVRKKAQKNLLPLQPGDVPATY  300
            EWSGA PDPG+S APY++YNIG+N+PV L  F+E IE+++ K A+KN + LQPGDVP TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ANVDDLIDDVGYKPATPVEEGIARFVDWYRDFYN  334
            ANVDDL+ D+++KP T +++G+ +FVDWY ++Y+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

10) Bsel_3033 in NC_014219


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  381 bits (1431),  Expect = 3e-107, Method: Compositional matrix adjust.
 Identities = 203/334 (61%), Positives = 279/334 (84%), Gaps = 1/334 (0%)

Query  1    MNILVTGAAGFIGMYLSKRLMDEGQQVIGVDNINDYYETQLKKDRLALLEEYDQFSFYKV  60
            M+IL+TG+AGFIG  L+K+L+ +G+ VIGVD+INDYY   LK DRL  +   ++F+F KV
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DLADRNSFNQIFKDNKIDIVINLAAQAGVRYSIENPHAYVDSNLVGFVNVLEACRHYDVK  120
             L + + ++++F D++ ++V+NLAAQAGVRYSIENP++Y+DSN+VGF+N+LE  RH++++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLIYASSSSVYGANQKMPFATTDEVNHPVSLYAATKKSNELMAHTYSHLYNIPTTGLRFF  180
            +LIYASSSSVYGAN   PF+T+D+++HP+SLYAATKKSNELMAHTYSHLYN+PTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPMGRPDMAYFSFTKKIVAGETIQVFNNGEMMRDFTYIDDIVDGIVRLLDHPPKGNP  240
            TVYGP GRPDMA F FTK IV +++I+V+N+G+MMRDFTY+DDIV++I RL+  P+  N 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DFDRENPTPNESYAPYKVYNIGNNQPVKLMDFIQTLEKHLGIEAKKEYLPMQPGDVKATY  300
            +    +P P  SYAPYKVYNIGNN PV+LM+F++++E+ LG EA+K+Y+ +QPGDV  TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADIDELSRDTGFKPTTTIDEGLGKFVAWYKDYYN  334
            A++D+L RD +FKP TTI++G+ KFV WY +YY+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

11) Desal_3834 in NC_012881


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  380 bits (1430),  Expect = 4e-107, Method: Compositional matrix adjust.
 Identities = 210/334 (63%), Positives = 281/334 (85%), Gaps = 1/334 (0%)

Query  1    MKVLVTGAAGFIGFHLSKRLLAEGHEVVGLDILNDYYDVNVKKNRLKQIEDNDKFTFAYM  60
            MK+L+TG+AGFIG HL+K+L+ +GH V+G+D +NDYY V++K +RLK I ++++FTF  +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  61   DMADREAMEKLFAKEKFTHVVNLAAQAGVRYSLINPQAYIDSNVVGFMNILEGCRHNGVE  120
             + + + + K+F  E+   VVNLAAQAGVRYS+ NP++YIDSN+VGFMNILE  RH  ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGLNTNMPFSIHDNVDHPISMYAATKKSNELMAHSYSHLFNIPTTGLRFF  180
            +L+YASSSSVYG NT+ PFS  DN+DHP+S+YAATKKSNELMAH+YSHL+N+PTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFLFTKAIFEDKPINVFNHGKMLRDFTFIDDIVEGVVRVMKNTAKPNA  240
            TVYGPWGRPDMALF FTKAI +D++I+V+NHG+M+RDFT++DDIVE++ R++K+ A PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWSGDAPDPGTSPAPFRIYNIGNNQPTELMRYIEVLEDCIGKKAEKNMMPLQAGDVPSTY  300
            +WSG  PDPG+S AP+++YNIGNN P  LM ++E +E+ +GK A KN M LQ+GDVP TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ANVDDLVRDVDFKPETTVEEGIAKFVEWYRGYYN  334
            ANVDDL RD+DFKPETT+++G+ KFV+WY  YY+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

12) uge in NC_007517


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  380 bits (1429),  Expect = 5e-107, Method: Compositional matrix adjust.
 Identities = 207/333 (63%), Positives = 277/333 (84%), Gaps = 1/333 (0%)

Query  3    TVLVTGAAGFIGFHLSQRLLARGDRVVGLDNLNDYYDVNLKLDRLRQLEGREGFRFIRAS  62
             +L+TG+AGFIG HL+++L+ +G+ V+G+D++NDYY V+LK DRL+ + G+E F F +  
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKVK  60

Query  63   LADRPALEELFSGERFDAVVNLAAQAGVRYSLKNPHAYVESNLVGFMNILEGCRHHGVKH  122
            L +   L  +F +E+ + VVNLAAQAGVRYS+ NP++Y++SN+VGFMNILE  RH  +++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  123  LVYASSSSVYGANTAMPFSVHHNVDHPVSLYAATKKANELMAHTYSSLYGLPTTGLRFFT  182
            L+YASSSSVYGANT+ PFS  +N+DHP+SLYAATKK+NELMAHTYS LY LPTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  183  VYGPWGRPDMALFLFTKAILEGRPIDVYNHGKMQRDFTYIDDIVEGVMRVMDRTAEPNPS  242
            VYGPWGRPDMALF FTKAI+++++IDVYNHG+M RDFTY+DDIVE++ R++ + A PN  
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  243  WSGDHPDPGTSYAPYRIYNIGNNSPVELLTFIETIEKCIGKPAEKNFLPIQAGDVPATYA  302
            WSG +PDPG+SYAPY++YNIGNNSPV L+ F+E+IE+ +GK A KN++ +Q+GDVP TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  303  DVDDLMNDVGFKPATPIGEGIRRFVEWYREYYH  335
            +VDDL  D++FKP T I +G+ +FV+WY EYY 
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

13) GM21_3403 in NC_012918


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  377 bits (1419),  Expect = 3e-106, Method: Compositional matrix adjust.
 Identities = 210/333 (64%), Positives = 280/333 (85%), Gaps = 1/333 (0%)

Query  3    KILVTGAAGFIGFHLSEKLLAKGCEVVGLDNLNDYYEVALKEGRLSRLEGKPGFRFARMN  62
            KIL+TG+AGFIG HL+ KL+ +G  V+G+D++NDYY V+LKE+RL  + GK  F F +++
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKVK  60

Query  63   LEDREGIKELFAAEKFDSVVNLAAQAGVRYSIENPYVYIDSNLSGFINILEGCRHNKVGH  122
            LE+ +++  +F  E+ + VVNLAAQAGVRYSIENP  YIDSN+ GF+NILE  RH ++ +
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  123  LVYASSSSVYGANTTMPFSVHHNVDHPVSLYAATKKANELMAHTYSSLYGLPTTGLRFFT  182
            L+YASSSSVYGANT+ PFS  +N+DHP+SLYAATKK+NELMAHTYS LY LPTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  183  VYGPWGRPDMALFLFTKAILEGKPIDVFNYGKMQRDFTFIDDIVEGVARVIDSVPAGDPG  242
            VYGPWGRPDMALF FTKAI+++++IDV+N G+M RDFT++DDIVE+++R++   ++ +  
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  243  WSGANPDPGTSYAPYKIYNIGNNNPVELMRFIEVLEKALGKEAQKNLLPIQAGDVPATYA  302
            WSGA+PDPG+SYAPYK+YNIGNN+PV LM F+E +E+ LGKEA+KN + +Q+GDVP TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  303  DVDDLMRDVGFKPATSIEDGIARFVAWYRDFYK  335
            +VDDL RD++FKP T+I+DG+ +FV WY ++YK
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

14) Dret_2499 in NC_013223


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  377 bits (1418),  Expect = 3e-106, Method: Compositional matrix adjust.
 Identities = 209/333 (63%), Positives = 275/333 (83%), Gaps = 1/333 (0%)

Query  1    MRVLVTGAAGFIGSHLSRRLLDDGHVVVGLDNLNDYYSPELKEARLNLLREYENFDFVML  60
            M++L+TG+AGFIGSHL+++L+ +GH V+G+D++NDYYS  LKE RL+ +   ENF F  +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DLIEDAELDRVFAEYGFTHVVNLAAQAGVRYSLENPKAYIDSNINGFAHLLECCRHHSIH  120
             L +  +L +VF +     VVNLAAQAGVRYS+ENP++YIDSNI GF ++LEC RH +I+
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVFASSSSVYGLNTAMPFSVHDNVDHPISLYAASKKSNELMAHTYSYLYGLPTTGLRFF  180
            +L++ASSSSVYG NT+ PFS  DN+DHP+SLYAA+KKSNELMAHTYS LY LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFLFTEAILSGKPIKVFNHGKMQRDFTYIDDIVEGVVRVLHRPARANP  240
            TVYGPWGRPDMALF FT AI+++++I V+NHG+M RDFTY+DDIVE++ R++ +PA +N 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  EWDGARPDPGSSPAPYKLYNIGNNNSVELERFIEVVESCLGKKAKKDYLPLQPGDVPATY  300
            EW GA PDPGSS APYK+YNIGNN++V L  F+E +E+ LGK A+K+Y+ LQPGDVP TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADVDDLMADVGFRPNTPIEEGVANFVSWYMSYY  333
            A+VDDL  D++F+P+T I++GV +FV WY+ YY
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

15) lspL in NC_012526


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  376 bits (1412),  Expect = 1e-105, Method: Compositional matrix adjust.
 Identities = 211/334 (64%), Positives = 277/334 (83%), Gaps = 1/334 (0%)

Query  6    MKVLVTGAAGFIGSTLSHRFLERGDEVIGFDNFNPYYDPQLKRDRAARLTVKPGFTLIEG  65
            MK+L+TG+AGFIGS L+ +++ +G+ VIG D++N YY   LK DR   +  K  FT+   
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG-KENFTFNKV  59

Query  66   NLEDRSAVDRLFREHRPERVVNLAAQAGVRYSLENPHAYIDANIVGFMNILEGCRHHGVQ  125
            +LE+   + ++F +++PE VVNLAAQAGVRYS+ENP++YID+NIVGFMNILE  RH  +Q
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  126  HLAYASSSSVYGMNTSMPFSVHDNVDHPLSLYAATKKANELMAHTYSHLYGLPTTGLRFF  185
            +L YASSSSVYG NTS PFS  DN+DHPLSLYAATKK+NELMAHTYSHLY LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  186  TVYGPWGRPDMAMFLFTRAILQGQPINVFNHGQMQRDFTYVDDIVEGVVRVTDQVATQNS  245
            TVYGPWGRPDMA+F FT+AI+++Q+I+V+NHG+M RDFTYVDDIVE++ R+  + A+ N 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  246  QWNGAQPDPGTSSAPYRLYNIGNNNPVQLLHLIEVLEEKLGKKAEKNMLPLQDGDVPATY  305
            +W+GA+PDPG+S APY++YNIGNN+PV+L++++E +E+KLGK A KN + LQ GDVP TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  306  ANVDDLVRDVGFKPATSIEDGVGRFVEWYRGYFR  339
            ANVDDL RD++FKP T+I+DGV +FV+WY  Y++
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

16) Plabr_0533 in NC_015174


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  376 bits (1415),  Expect = 6e-106, Method: Compositional matrix adjust.
 Identities = 207/333 (63%), Positives = 280/333 (85%), Gaps = 1/333 (0%)

Query  3    KYLVTGAAGFIGFHLSQKLMDRGDQVIGIDNLNDYYEVALKEARLAQLQERDSFSFHKLD  62
            K L+TG+AGFIG HL++KL+ +G+ VIG+D++NDYY V+LKE RL  +  +++F+F+K+ 
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKVK  60

Query  63   LSDRDGINALFAAQKPDVVVNLAAQAGVRYSLTNPHAYVDSNLVGFVNILEACRHNETKH  122
            L + D+++ +F  ++P+VVVNLAAQAGVRYS+ NP++Y+DSN+VGF+NILE  RH + ++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  123  LVYASSSSVYGSNKKMPFSIHHSVDHPVSLYAASKKANELMAHTYSHLYGLPTTGLRFFT  182
            L+YASSSSVYG+N   PFS  +++DHP+SLYAA+KK+NELMAHTYSHLY LPTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  183  VYGPWGRPDMALFLFTKAILEGRPIDVFNYGKMQRDFTYVDDIVEGVIRVSDNTPQPNPE  242
            VYGPWGRPDMALF FTKAI+++++IDV+N G+M RDFTYVDDIVE++ R+  + + PN E
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  243  WSGDEADPGSSSAPYKLYNIGNNQPVELMHMIETLEKCLGKTAEKNLMPIQPGDVPATYA  302
            WSG ++DPGSS APYK+YNIGNN PV LM+ +E++E+ LGK A KN M +QPGDVP TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  303  DVDDLVRDVGFSPATPIETGISNFVDWYRDFYK  335
            +VDDL RD++F P T I+ G+++FVDWY ++YK
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

17) AXY_19990 in NC_018704


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  375 bits (1410),  Expect = 1e-105, Method: Compositional matrix adjust.
 Identities = 211/335 (63%), Positives = 277/335 (83%), Gaps = 1/335 (0%)

Query  1    MKILITGAAGFIGFHLSKKLLDDSYQIIGIDNLNDYYDPSLKQSRLEILGKYNNFNFHKV  60
            MKILITG+AGFIG HL+KKL+ ++  +IG+D++NDYY  SLK+ RL  +GK +NF F+KV
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DLKDKAAVDNIFETYQPTHVINLAAQAGVRYSIENPYAYVDSNLTGFMNILEACRNYPVE  120
             L +   + ++F   QP  V+NLAAQAGVRYSIENP +Y+DSN+ GFMNILE  R++ ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLLYASSSSVYGGNKVAPFSTNHNVDHPVSLYAATKKSNELMAHTYSHLYGIPTTGLRFF  180
            +L+YASSSSVYG+N   PFST++N+DHP+SLYAATKKSNELMAHTYSHLY +PTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPYGRPDMAYFSFTKDILAGKPIKVFNHGKMERDFTYIDDIVEGIVKLIDKAPVANK  240
            TVYGP GRPDMA F FTK I+ +++I V+NHG+M RDFTY+DDIVE+I +L+ K++ +NK
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWDESKDDLSTSFAPYKIYNIGNNNPVQLMRFINALESALGKEAEKVYMDMQPGDVLRTY  300
            +W  +  D ++S+APYK+YNIGNN+PV+LM F++A+E+ LGKEA K YMD+QPGDV  TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADVSDLERDINFKPSTSIEDGLAKFVDWYVGYYHN  335
            A+V DL RDI+FKP T+I+DG+ KFVDWY+ YY +
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

18) Alvin_2214 in NC_013851


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  374 bits (1406),  Expect = 3e-105, Method: Compositional matrix adjust.
 Identities = 205/335 (62%), Positives = 274/335 (82%), Gaps = 1/335 (0%)

Query  1    MKILITGSAGFIGSALSLRLLERGDTVIGVDNLNDYYDVRLKEARLARTLDHPNYTDVRL  60
            MKILITG+AGFIGS L+ +L+ +G+ VIGVD++NDYY V LKE RL ++++  N+T  ++
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRL-KSIGKENFTFNKV  59

Query  61   DIEDGAGLTEVFRTHRPERVVNLAAQAGVRYSLENPMAYVSTNLVGFANILECCRHHGVE  120
             +E+  +L+ VF  ++PE VVNLAAQAGVRYS+ENP +Y+ +N+VGF NILEC RH  ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGANTEMPFSVHDNVDHPLSLYAASKKANELMAHTYSHLYRLPTTGLRFF  180
            +L+YASSSSVYGANT  PFS  DN+DHPLSLYAA+KK+NELMAHTYSHLY LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTRAILAGEPIQVFNYGQHRRDFTYVDDIVEGVIRVLDRVPAGNP  240
            TVYGPWGRPDMALFKFT+AI+ +++I+V+N G+  RDFTYVDDIVE++ R++ + ++ N 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWSGAKPDPASSRAPYRVYNIGNNQPVELMEYIAVLEQCLGRKAEMELLPLQPGDVPDTF  300
            +WSGA PDP+SS APY+VYNIGNN PV LME++  +E+ LG+ A  + + LQPGDVP+T+
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADVTDLVRDTGYKPDTPVAVGVARFVAWYQDFYTQ  335
            A+V DL RD ++KP+T +  GV +FV WY ++Y +
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

19) Nhal_0564 in NC_013960


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  374 bits (1404),  Expect = 4e-105, Method: Compositional matrix adjust.
 Identities = 202/334 (61%), Positives = 277/334 (83%), Gaps = 1/334 (0%)

Query  1    MKIMVTGSAGFIGAALTEKLLKRGDEIIGVDNLNDYYDVNLKLARLARFQDQPAFTEARM  60
            MKI++TG+AGFIG+ L+ KL+K+G+ +IGVD++NDYY V+LK  RL  +  +  FT  ++
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKV  59

Query  61   GLENREALNTVFAKHRPQRVVNLAAQAGVRYSLENPHAYVDSNLQGFLNILENCRHYQVE  120
             LEN + L+ VF  ++P+ VVNLAAQAGVRYS+ENP++Y+DSN+ GF+NILE  RH++++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVFASSSSVYGANTKMPYSVHDNVDHPLSLYAASKKANELMAHTYSHLYQLPVTGLRFF  180
            +L++ASSSSVYGANT  P+S  DN+DHPLSLYAA+KK+NELMAHTYSHLY+LP TGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTRNILAGRPIDVYNYGHHQRDFTYIDDIVEGVIRTLDRLPTPNS  240
            TVYGPWGRPDMALFKFT+ I+ +++IDVYN G+  RDFTY+DDIVE++ R + + ++PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  NWNGAAPDPSTSTAPYRLYNIGNHQPVELSDFIKTLEECLGCEAKKNLLPMQPGDVPATY  300
            +W+GA PDP++S APY++YNIGN+ PV L +F+ ++E+ LG EA+KN + +QPGDVP TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADVDDLMRDVGFHPATPIEQGIARFVTWYKDYYK  334
            A+VDDL RD++F P T I++G+ +FV WY +YYK
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

20) Tgr7_2111 in NC_011901


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  373 bits (1401),  Expect = 7e-105, Method: Compositional matrix adjust.
 Identities = 203/334 (61%), Positives = 279/334 (84%), Gaps = 1/334 (0%)

Query  1    MKVLVTGTAGFIGNTLAIRLLERGDEVIGVDNLNDYYDVNLKKARLARIADNPAFTDVRA  60
            MK+L+TGTAGFIG+ LA +L+ +G+ VIGVD++NDYY V+LK  RL  I+ +  FT  + 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKV  59

Query  61   DIADRAAMEKVFATHKPERVVNLAAQAGVRYSIENPHAYVDTNLVGFCNILEGCRHHGVE  120
             + +   + KVF  ++PE VVNLAAQAGVRYSIENP++Y+D+N+VGF NILE  RH  ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGANTSMPFSVHDNVDHPMSLYAASKKANELMAHTYSSLYKLPTTGLRFF  180
            +L+YASSSSVYGANTS PFS  DN+DHP+SLYAA+KK+NELMAHTYS LY+LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFMFTRNILAGKPIDVFNYGKHRRDFTYIDDIVEGVIRVLDRVPAPNP  240
            TVYGPWGRPDMALF FT+ I+ +++IDV+N G+  RDFTY+DDIVE++ R++ + ++PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWTGAAPDSATSYAPYQLYNIGNNQPVELMHYIEVLEQCLGKKAEKNLLPLQPGDVPDTY  300
            +W+GA PD+++SYAPY++YNIGNN PV LM+++E +E+ LGK A KN + LQPGDVP+TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADVQDLIKDVDYKPDTPVEQGITNFVNWYREFYN  334
            A+V+DL++D+D+KP+T +++G+ +FV+WY E+Y+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

21) BH3709 in NC_002570


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  373 bits (1401),  Expect = 9e-105, Method: Compositional matrix adjust.
 Identities = 197/334 (59%), Positives = 279/334 (84%), Gaps = 1/334 (0%)

Query  1    MKILVTGAAGFIGMYVAKRLLEEGHFVVGIDNLNDYYDPQLKNDRLLQLRELGNFEFHKM  60
            MKIL+TG+AGFIG  +AK+L+ +GH+V+G+D++NDYY   LK+DRL  +    NF F+K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DLTERDRLRQLFLDKEITHVINLAAQAGVRYSLKNPHAYIDSNLVGFTNLLESCRELNVK  120
             L + D L ++F+D +   V+NLAAQAGVRYS+ NP++YIDSN+VGF N+LE  R++N++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLIYASSSSVYGANRKMPFATSDEVNHPVSLYAATKKANELLAHSYSHLYHIPTTGLRFF  180
            +LIYASSSSVYGAN   PF+TSD+++HP+SLYAATKK+NEL+AH+YSHLY++PTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMAYFSFTKNIVEGQTIKVFNHGEMMRDFTYIDDIVDGVVALLEQPPQADP  240
            TVYGPWGRPDMA F FTK IV++Q+I V+NHG+MMRDFTY+DDIV+++  L+ +P+ ++ 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  NWDFEHPMASSSYAPYKIYNIGNNQPVKLMDFIETLEKHLGIEAKKEFLPMQPGDVQATY  300
            +W   +P ++SSYAPYK+YNIGNN PV+LM+F+E++E+ LG EA+K+++ +QPGDV  TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADIDDLQQATGFTPSTSIDEGLKKFVDWFKTYYN  334
            A++DDL +  +F P T+I++G++KFVDW+  YY+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

22) Mmc1_2116 in NC_008576


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  372 bits (1399),  Expect = 1e-104, Method: Compositional matrix adjust.
 Identities = 189/334 (57%), Positives = 275/334 (83%), Gaps = 1/334 (0%)

Query  1    MRVLITGAAGFIGSALSRKLLDRGDEVIGIDNLNDYYDVTLKQARLARHVEHPAYTDLRV  60
            M++LITG+AGFIGS L++KL+ +G+ VIG+D++NDYY V+LK+ RL + +    +T  +V
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRL-KSIGKENFTFNKV  59

Query  61   DLEDSQAVAQVFATHKPQRVVNLAAQAGVRYSLVNPHAYINANVVGFLNILEGCRNHDVE  120
             LE+ + +++VF  ++P+ VVNLAAQAGVRYS+ NP++YI++N+VGF+NILE  R+ +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASTSSVYGANTNMPFSEHSGTQHPVSLYAATKKSNEMMAHAYSHIFRLPVTGLRFF  180
            +L+YAS+SSVYGANT+ PFS     +HP+SLYAATKKSNE+MAH+YSH++ LP TGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFMFTRKMLAGEPIDVFNHGRHMRDFTYIDDIVNGVERVLDKIAQPNE  240
            TVYGPWGRPDMALF FT+ ++ +++IDV+NHG  MRDFTY+DDIV+++ R++ K A PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  AWTGQNPDPATSLSPYRIYNIGNNEPVELMRYIEVLESTLGIAAKKNFLPLQKGDVPDTY  300
             W+G +PDP++S +PY++YNIGNN PV LM ++E +E+ LG  A+KN++ LQ GDVP+TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADVSNLVEDIGYRPQTTVEEGIGKFVAWYRDYYQ  334
            A+V +L  DI+++P+TT+++G+ KFV WY +YY+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

23) TK90_0618 in NC_013889


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  372 bits (1400),  Expect = 9e-105, Method: Compositional matrix adjust.
 Identities = 202/338 (60%), Positives = 273/338 (81%), Gaps = 5/338 (1%)

Query  1    MKVLITGAAGFIGSHLALRLLERGDTVIGVDDMNDYYDPSLKRARLDRIRALPASRQRFV  60
            MK+LITG+AGFIGSHLA +L+ +G+ VIGVD +NDYY  SLK  RL  I     +++ F 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-----GKENFT  55

Query  61   FEHEDIADRAEMERVFREHRPERVVNLAAQAGVRYSLENPAAYVDTNLVGFGNILEGCRH  120
            F+   + +  ++ +VF +++PE VVNLAAQAGVRYS+ENP +Y+D+N+VGF NILE  RH
Sbjct  56   FNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRH  115

Query  121  FGVEHLVYASSSSVYGANTTMPFSVHDNVDHPLSLYAASKKANELMAHTYAHLYQLPVTG  180
            F +++L+YASSSSVYGANT+ PFS  DN+DHPLSLYAA+KK+NELMAHTY+HLY+LP TG
Sbjct  116  FNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTG  175

Query  181  LRFFTVYGPWGRPDMALFLFTKKILAGEPIDVFNYGHHRRDFTYIDDIVEGVIRTLDRPA  240
            LRFFTVYGPWGRPDMALF FTK I+ +++IDV+N G+  RDFTY+DDIVE++ R + +PA
Sbjct  176  LRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPA  235

Query  241  QPNLDWTGAEPDSATSAAPYRLYNIGAHRPVELMHYIEVLEDCLGCKAEKNLLPLQPGDV  300
             PN +W+GA+PD+++S APY++YNIG + PV LM+++E +E+ LG  A KN + LQPGDV
Sbjct  236  SPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDV  295

Query  301  PDTYADVEALRTDTGYEPTTSVEEGVARFVDWYLGYYR  338
            P+TYA+V+ L  D ++ P T++++GV +FVDWYL YY+
Sbjct  296  PETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

24) SYN_01112 in NC_007759


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  371 bits (1396),  Expect = 2e-104, Method: Compositional matrix adjust.
 Identities = 206/332 (63%), Positives = 272/332 (82%), Gaps = 1/332 (0%)

Query  6    NILVTGAAGFIGFHLSRRLLAAGHSVVGLDNLNDYYDVRLKEARLARLTPHPNFRFVRQG  65
            +IL+TG+AGFIG HL+++L+  GH V+G+D++NDYY V LKE RL  +  + NF F +  
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKVK  60

Query  66   LEEREKLHALFAAESFATVVNLAAQAGVRYSLTNPYAYIDSNIVGFVNLLEGCRHYGVRH  125
            LE+ + L  +F  E    VVNLAAQAGVRYS+ NP +YIDSNIVGF+N+LE  RH+ +++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  126  LVYASSSSVYGANTAMPFSVHHNVDHPVSLYAATKKANELMAHTYSSLYGIPATGLRFFT  185
            L+YASSSSVYGANT+ PFS  +N+DHP+SLYAATKK+NELMAHTYS LY +P+TGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  186  VYGPWGRPDMALFLFTRAILEGRPIDVFNYGKMRRDFTYVDDIVEGVVRVMDRIPEGNPA  245
            VYGPWGRPDMALF FT+AI+++++IDV+N G+M RDFTYVDDIVE++ R++ + +  N  
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  246  WSGDHPDPGTSYAPYKIYNIGNNNPVELLSFIEALEDCLGKKAEKNFLPLQAGDVPATYA  305
            WSG +PDPG+SYAPYK+YNIGNN+PV L+ F+EA+E+ LGK A KN++ LQ+GDVP TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  306  DVDDLMRDVGFQPSTPIEEGIRRFVTWYREYY  337
            +VDDL RD++F+P T I++G+ +FV WY EYY
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

25) Cri9333_3498 in NC_019753


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  371 bits (1395),  Expect = 2e-104, Method: Compositional matrix adjust.
 Identities = 203/333 (61%), Positives = 278/333 (84%), Gaps = 1/333 (0%)

Query  3    KILVTGAAGFIGFHLSQRLLSRGDEVVGLDNLNNYYDVTLKKDRLAQLEGKPGFSFHQLD  62
            KIL+TG+AGFIG HL+++L+ +G+ V+G+D++N+YY V+LK DRL  + GK  F+F+++ 
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKVK  60

Query  63   LGDREGIANLFTEQNFDVAVNLAAQAGVRYSLKNPHAYIDSNIVGFTNILEGCRHSQVKH  122
            L + ++++++F +++ +V VNLAAQAGVRYS+ NP++YIDSNIVGF NILE  RH ++++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  123  LVYASSSSVYGSNTKMPFSVHDNVDHPVSLYAASKKANELMAHTYSHLYNLPTTGLRFFT  182
            L+YASSSSVYG+NT  PFS  DN+DHP+SLYAA+KK+NELMAHTYSHLYNLPTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  183  VYGPWGRPDMALFLFTKAILSGQPIDVFNYGKMRRDFTYIDDIIEGVVRVIDNIPQPNSD  242
            VYGPWGRPDMALF FTKAI+++Q+IDV+N G+M RDFTY+DDI+E++ R++ + + PN +
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  243  WSADAPDPGTSKAPYKIYNIGNNQPVELMKFIEVLEDCLGRKAEKNLLPIQLGDVPATYA  302
            WS+  PDPG+S APYK+YNIGNN PV LM F+E +E+ LG+ A KN + +Q GDVP TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  303  DVDDLINDVGFKPNTPIEVGIESFVAWYRSYYS  335
            +VDDL+ D++FKP+T I+ G++ FV WY  YY 
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

26) MC28_E057 in NC_018687


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  371 bits (1393),  Expect = 3e-104, Method: Compositional matrix adjust.
 Identities = 202/335 (61%), Positives = 280/335 (84%), Gaps = 1/335 (0%)

Query  1    MKILVTGAAGFIGFHLTKRLLAQDINVIGVDSLNDYYDIFLKKDRLKILKEHDNFEFHKI  60
            MKIL+TG+AGFIG HL+K+L+ Q+  VIGVDS+NDYY + LK DRLK +   +NF F+K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  61   DISNKEKLNTIFIDRKVNIVINLAAQAGVRYSIDNPDSYINSNIVGFVNILEACRQYNVE  120
             + N + L+ +F+D + ++V+NLAAQAGVRYSI+NP +YI+SNIVGF+NILE  R++N++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLIYASSSSVYGANTNIPFSTKDSVNHPVSLYAATKKSNELLAHTYSHLFNIPTTGLRFF  180
            +LIYASSSSVYGANT+ PFST D+++HP+SLYAATKKSNEL+AHTYSHL+N+PTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMAYYSFTRNIIEENTIKVFNNGDMKRDFTYIDDIVEAIIRLLDNAPIYNR  240
            TVYGPWGRPDMA + FT+ I+++++I V+N+G+M RDFTY+DDIVEAI RL+ +++  N+
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  RWDTDNPDPSSSYAPYKIYNIGNSNPIKLMEFINILEKIIKKKARIEFLPLQQGDVKETY  300
             W   +PDP+SSYAPYK+YNIGN++P++LMEF++ +E+ + K AR +++ LQ GDV ETY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADISDLQADVGYYPSTTIVEGLTQFVNWYYKYYVK  335
            A++ DL  D+++ P TTI +G+ +FV+WY  YY K
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

27) WCFX in NC_005090


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  371 bits (1393),  Expect = 4e-104, Method: Compositional matrix adjust.
 Identities = 216/349 (62%), Positives = 284/349 (82%), Gaps = 16/349 (4%)

Query  1    MKILVTGTAGFIGSHLAKRLLERGDEVVGLDNINDYYDLRVKYGRLERAGIESSSIEYGK  60
            MKIL+TGTAGFIGSHLAK+L+ +G+ V+G+D+INDYY + +K +RL   G E        
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE--------  52

Query  61   LLSSATESNYRFVKLNLEDREALHALFEQEKFDKVCNLAAQAGVRYSLTNPYAYIDSNIV  120
                    N+ F K++LE+ + L  +F +E+ + V NLAAQAGVRYS+ NP +YIDSNIV
Sbjct  53   --------NFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIV  104

Query  121  GFINILEGCRHFGVKHLAYASSSSVYGLNESMPFSTSDNVDHPISLYAASKKSNELMAHT  180
            GF+NILE  RHF +++L YASSSSVYG N S PFSTSDN+DHP+SLYAA+KKSNELMAHT
Sbjct  105  GFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHT  164

Query  181  YSHLYKIPTTGLRFFTVYGPWGRPDMALFLFTKAILEDRAIDVFNHGEMLRDFTYVDDIV  240
            YSHLY++PTTGLRFFTVYGPWGRPDMALF FTKAI++D+AIDV+NHG+M+RDFTYVDDIV
Sbjct  165  YSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIV  224

Query  241  EGVVRVIDNPPMGDPNWSGKHPNPGSSKAPYKIYNIGNNSPVRLMDFITEIEKNLGKVAK  300
            E++ R++ +P+  + +WSG +P+PGSS APYK+YNIGNNSPVRLM+F+  IE++LGK A+
Sbjct  225  EAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEAR  284

Query  301  KNMLPLQMGDVPATYADVSDLVENLHYKPNTSIEEGIARFVKWYREFFR  349
            KN + LQ GDVP TYA+V DL  ++++KP+T+I++G+ +FV WY E+++
Sbjct  285  KNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

28) ST548_p7874 in NC_020181


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  370 bits (1392),  Expect = 4e-104, Method: Compositional matrix adjust.
 Identities = 202/333 (61%), Positives = 275/333 (83%), Gaps = 0/333 (0%)

Query  1    MKYLVTGAGGFIGFHVSQRLLKDGHHVVGIDNLNDYYDVSLKQARLNLLQSSLFTFHKMD  60
            MK L+TG++GFIG H++++L+K+GH V+G+D++NDYY VSLK+ RL+ +    FTF+K+ 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  61   LADRPQMEQLFVSEKFDRVIHLAAQAGVRYSLENPHAYADSNLMGFLNILEGCRHNKVQH  120
            L +  ++ ++FV E+ + V++LAAQAGVRYS+ENP++Y DSN++GF+NILE  RH ++Q+
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  121  LIYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYAHLYGIPTTGLRFFT  180
            LIYASSSSVYG N   PFST D++DHP+SLYAATKK+NELMAHTY+HLY +PTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  181  VYGPWGRPDMALFKFTKAMLEGGSIDVYNHGKMKRDFTYIDDIVEAIIRLQNVVPQPDPD  240
            VYGPWGRPDMALFKFTKA++++ +IDVYNHG+M RDFTY+DDIVEAI RL +  + P+ +
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  241  WTVESGSPATSSAPYRVYNIGNSSPVELMDYITALEDALGIEAKKNMMPMQPGDVMETSA  300
            W+     P++S APY+VYNIGN+SPV LM+++ A+E+ LG EA+KN M +QPGDV ET A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  301  DTADLYNTIDFKPETSVRKGVENFVCWYKKYYQ  333
            +  DL+  IDFKPET+++ GV++FV WY  YY+
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

29) GM18_0750 in NC_014973


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  370 bits (1390),  Expect = 6e-104, Method: Compositional matrix adjust.
 Identities = 207/333 (63%), Positives = 277/333 (84%), Gaps = 1/333 (0%)

Query  3    KMLVTGAAGFIGFHLSKRLLAAGVEVVGLDNLNDYYDVNLKYGRLKQLEGEPGFRFEKME  62
            K+L+TG+AGFIG HL+K+L+  G  V+G+D++NDYY V+LK +RLK + G   F F+K+ 
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKVK  60

Query  63   LSDREGMQALFKRERFDVVINLAAQAGVRYSLINPYAYVDSNLSGFMNILEGCRHHGVKH  122
            L + +++  +F  E+ +VV+NLAAQAGVRYS+ NP +Y+DSN+ GFMNILE  RH  +++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  123  LVYASSSSVYGANTSMPFSVHHNVDHPVSLYAATKKANELMAHTYSSLYGIPTTGLRFFT  182
            L+YASSSSVYGANTS PFS  +N+DHP+SLYAATKK+NELMAHTYS LY +PTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  183  VYGPWGRPDMALFLFTKAILEGRPIDVFNYGKMQRDFTYIDDIVEGVCRVIDRVPEKDPA  242
            VYGPWGRPDMALF FTKAI+++++IDV+N G+M RDFTY+DDIVE++ R++ + +  +  
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  243  WSGADPDPGTSYAPYKIYNIGNNNPVELLRFIEVLEQALGKEAQKNLLPIQAGDVPATYA  302
            WSGADPDPG+SYAPYK+YNIGNN+PV L+ F+E +E+ LGKEA+KN + +Q+GDVP TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  303  DVDDLMRDVGFRPATSIEDGVGRFVAWYREFYT  335
            +VDDL RD++F+P T+I+DGV +FV WY E+Y 
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

30) ANA_C20288 in NC_019439


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  370 bits (1390),  Expect = 6e-104, Method: Compositional matrix adjust.
 Identities = 205/333 (62%), Positives = 279/333 (84%), Gaps = 1/333 (0%)

Query  3    KILVTGAAGFIGFHLSKHLLERGDEVIGLDNLNDYYDVTLKKDRLKQLLEKPGFSFHLLD  62
            KIL+TG+AGFIG HL+K L+ +G+ VIG+D++NDYY V+LK DRLK +  K  F+F+ + 
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKVK  60

Query  63   LADRESIPKLFIESNFDKVVNLAAQPGVRYSLKNPHAYVDSNLVGFVNILEGCRHTNVQH  122
            L + + ++K+F++ + + VVNLAAQ+GVRYS+ NP++Y+DSN+VGF+NILE  RH N+Q+
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  123  LVFASSSSVYGANTKIPFSVHDNVDHPVSLYAASKKANELMAHTYSSLYGLPASGLRFFT  182
            L++ASSSSVYGANT  PFS  DN+DHP+SLYAA+KK+NELMAHTYS LY LP++GLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  183  VYGPWGRPDMALFLFTKAILAGQPIDVFNYGKMKRDFTYIDDIVEGVIRVIDQVAESNPN  242
            VYGPWGRPDMALF FTKAI+ +Q+IDV+N G+M RDFTY+DDIVE++ R++ + A +N +
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  243  WSGNAPDPATSYAPYKNYNIGNNQPIELMNFIETLENYLGMKAKKNLLPIQPGDLPVTYA  302
            WSG  PDP++SYAPYK YNIGNN P+ LM+F+E++EN LG  A+KN + +QPGD+P TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  303  DVDDLVQDIGFKPNTSIEVGIERFVVWYRSYYQ  335
            +VDDL +DI+FKP+T+I+ G+++FV WY  YY+
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

31) MCA2449 in NC_002977


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  369 bits (1386),  Expect = 1e-103, Method: Compositional matrix adjust.
 Identities = 205/333 (62%), Positives = 271/333 (82%), Gaps = 1/333 (0%)

Query  1    MRILITGTAGFIGSHLAHKLLDRGDEIIGIDNVNDYYDVSLKEARLARLHARPGFSEARI  60
            M+ILITGTAGFIGSHLA KL+ +G+ +IG+D++NDYY VSLKE RL  + ++  F+  ++
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  61   ALEERDKLFATFARHRPERVVNLAAQAGVRYSLENPHAYVDANLVGFCNILEACRHYEVE  120
             LE+ D L   F  ++PE VVNLAAQAGVRYS+ENP++Y+D+N+VGF NILE  RH++++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGANTAMPFSVHHNLDHPVSLYAATKKANELMAHTYSHLFGLPTTGLRFF  180
            +L+YASSSSVYGANT+ PFS  +N+DHP+SLYAATKK+NELMAHTYSHL+ LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTRNILAGQPIDVYNYGHHRRDFTYIDDIVEGVVQTLDKVAAPDP  240
            TVYGPWGRPDMALFKFT+ I+ +Q+IDVYN G+  RDFTY+DDIVE++ + + K A+P+ 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  AWRGDRPDPGTSRAPYRLYNIGNNEPVELLRFIEVLEHCLGCKAEMNLLPMQDGDVPDTY  300
             W G  PDPG+S APY++YNIGNN PV L+ F+E +E+ LG  A  N + +Q GDVP+TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADVDDLMRDTGYRPATPIETGIARFVEWYRDYY  333
            A+VDDL RD +++P T I+ G+ +FV+WY +YY
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

32) Ent638_2640 in NC_009436


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  369 bits (1387),  Expect = 1e-103, Method: Compositional matrix adjust.
 Identities = 202/333 (61%), Positives = 278/333 (84%), Gaps = 0/333 (0%)

Query  1    MKFLVTGAAGFIGFHVSGRLLDAGHQVVGIDNLNDYYDVSLKEARLNLLTSENFTFHKLD  60
            MK+L+TG+AGFIG H++ +L+  GH V+G+D++NDYY VSLKE RL+ +  ENFTF+K+ 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  61   LADREGMAKLFADEKFDRVIHLAAQAGVRYSLDNPHAYADANLIGHLNVLEGCRHNQVQH  120
            L + ++++K+F DE+ + V++LAAQAGVRYS++NP++Y D+N++G +N+LE  RH ++Q+
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  121  LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMSHTYSHLYNLPTTGLRFFT  180
            L+YASSSSVYG N   PFST D++DHP+SLYAATKK+NELM+HTYSHLYNLPTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  181  VYGPWGRPDMALFKFTKAMIEGNSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPQADAE  240
            VYGPWGRPDMALFKFTKA++++++IDVYN G+M RDFTY+DDI EAI RL    + ++ E
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  241  WTVETGSPATSSAPYRVYNIGNSSPVELMDYITALEDALGKEAQKNMMPIQPGDVLETSA  300
            W+     P++S APY+VYNIGN+SPV LM+++ A+E+ LGKEA+KN M +QPGDV ET A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  301  DTKALFDVIGFKPQTTVKDGVKNFVDWYRNFYN  333
            +   LF  I+FKP+TT++DGV++FVDWY ++Y+
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

33) Cag_1182 in NC_007514


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  369 bits (1387),  Expect = 9e-104, Method: Compositional matrix adjust.
 Identities = 206/333 (62%), Positives = 274/333 (83%), Gaps = 1/333 (0%)

Query  1    MNVLVTGAAGFIGSTLCKRLLERGDRVTGIDNLNDYYDVSLKEARLAQLQPYENFTFVKG  60
            M++L+TG+AGFIGS L K+L+ +G+ V G+D++NDYY VSLKE RL  +   ENFTF K 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DLADRAGMEALFAKGEFEGVVNLAAQAGVRYSIENPHSYVESNIVGFLHILEGCRHHGVK  120
             L +  ++  +F   + E VVNLAAQAGVRYSIENP++Y++SNIVGF++ILE  RH  ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGANETMPFSVHDNVDHPLSLYAASKKANELMAHTYSHLYNIPTTGLRFF  180
            +L+YASSSSVYGAN + PFS  DN+DHPLSLYAA+KK+NELMAHTYSHLYN+PTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFLFTDAILKNKPIKVFNYGKHRRDFTYIDDIVEGVIRTLDHTATPNP  240
            TVYGPWGRPDMALF FT AI+++++I V+N G+  RDFTY+DDIVE++ R +   A+PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  AWSGATPDPGSSKAPWRVYNIGNSQPVELMDYIQALENELGRTAIKEFLPLQPGDVPDTY  300
             WSGA PDPGSS AP +VYNIGN+ PV LM++++A+EN LG+ A K+++ LQPGDVP+TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADVDQLIEDVHYKPQTSVPEGVKRFVAWYKEYY  333
            A+VD+L+ D+++KP+T++ +GV++FV WY EYY
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

34) Sde_0618 in NC_007912


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  368 bits (1384),  Expect = 2e-103, Method: Compositional matrix adjust.
 Identities = 204/334 (62%), Positives = 280/334 (84%), Gaps = 1/334 (0%)

Query  1    MKVLVTGAAGFIGYHLSERLLARGDTVVGIDNINDYYDPNIKLARLERLNKHEAFEFQKL  60
            MK+L+TG+AGFIG HL+ +L+ +G+ V+G+D+INDYY  ++K  RL  + K E F F+K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DLADRGGMETLFSNHQFDRVVNLAAQAGVRYSIENPHAYVDSNIVGFLNILEGCRHTNVP  120
             L + +++  +F ++Q + VVNLAAQAGVRYSIENP++Y+DSNIVGF+NILE  RH N+ 
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLSYASSSSVYGANTLQPFSEHHNVDHPVALYAASKKANELMAHSYSSLYKLPTTGLRFF  180
            +L YASSSSVYGANT +PFS  +N+DHP++LYAA+KK+NELMAH+YS LY+LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFLFTKGILEGKPINIFNNGEMYRDFTYIDDIIEGVVRVTNKIAEPNP  240
            TVYGPWGRPDMALF FTK+I+++++I+++N+G+M RDFTY+DDI+E++ R+ +K A PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  LWTGDKPDPATSYAPFKVYNIGNNNPVKLMDFVEAIENELGIKAIKNMMPMQAGDVPGTS  300
             W+G  PDP++SYAP+KVYNIGNN+PV+LM+FVEAIEN LG  A KN M +Q+GDVP T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADVQSLMDDVGFKPEITVQQGIKQFVGWYKEYFK  334
            A+V+ L  D++FKPE T+Q+G+++FV+WY EY+K
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

35) PBPRA0207 in NC_006370


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  367 bits (1381),  Expect = 3e-103, Method: Compositional matrix adjust.
 Identities = 199/333 (60%), Positives = 271/333 (82%), Gaps = 0/333 (0%)

Query  1    MKYLVTGAAGFIGSAVSERLCAQGHEVIGIDNLNDYYDVSLKHARLDRAEHDKFTFVELD  60
            MK L+TG+AGFIGS ++ +L  QGH VIG+D++NDYY VSLK+ RL     ++FTF  + 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  61   LADRDGMAALFADQQFDRVIHLAAQAGVRYSIDNPMAYADSNLVGHLAILEGCRHNKVKH  120
            L + D+++ +F D+Q + V++LAAQAGVRYSI+NP +Y DSN+VG + ILE  RH ++++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  121  LVYASSSSVYGLNQKMPFNTSDSVDHPISLYAATKKSNELMAHTYSHLYDVPTTGLRFFT  180
            L+YASSSSVYG N   PF+TSD++DHP+SLYAATKKSNELMAHTYSHLY++PTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  181  VYGPWGRPDMALFKFTKAIVDGETIDVYNNGDMRRDFTYIDDIVEGVMRIQDVIPQKNPD  240
            VYGPWGRPDMALFKFTKAIV++++IDVYN+G+M RDFTY+DDIVE++ R+    +  N +
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  241  WTVEAGSPATSSAPYKVYNIGHGSPVKLMDYIEALEDALGIEAKKNFMPMQPGDVYATYA  300
            W+     P++S APYKVYNIG+ SPV+LM+++EA+E+ LG EA+KN+M +QPGDV  TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  301  DTEDLFKTINYQPAVKVKEGVKAFVDWYRAFYK  333
            + +DLF+ I+++P   +++GV+ FVDWY  +YK
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

36) Sulba_1879 in NC_018002


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  367 bits (1380),  Expect = 4e-103, Method: Compositional matrix adjust.
 Identities = 208/348 (60%), Positives = 277/348 (80%), Gaps = 16/348 (4%)

Query  1    MKILVTGTAGFIGSHLAKRLLERGDEVIGLDNINDYYDQRVKYGRLERAGIAQDVIEYNK  60
            MKIL+TGTAGFIGSHLAK+L+ +G+ VIG+D+INDYY   +K +RL   G          
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE--------  52

Query  61   IVPSSLHVNYRFIKLNLEDKASLETLFASEKFDAVCNLAAQAGVRYSLSNPQAYIDSNII  120
                    N+ F K++LE+   L  +F  E+ + V NLAAQAGVRYS+ NP++YIDSNI+
Sbjct  53   --------NFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIV  104

Query  121  GFINILECCRHYGVKNLSYASSSSVYGLNETLPFSTDDNVDHPISLYAASKKSNELMAHT  180
            GF+NILEC RH+ ++NL YASSSSVYG N + PFST DN+DHP+SLYAA+KKSNELMAHT
Sbjct  105  GFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHT  164

Query  181  YSHLFGIATTGLRFFTVYGPWGRPDMALFLFTKAALEGKSIDVFNNGEMQRDFTYIDDIV  240
            YSHL+ ++TTGLRFFTVYGPWGRPDMALF FTKA +++++IDV+N+G+M RDFTY+DDIV
Sbjct  165  YSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIV  224

Query  241  EGVIRVIDNPAKSDALWNGKDGRASTSSAPYKVYNIGNNNPVKLMDFIEAIEKKLGKKIE  300
            E++ R++ +PA ++  W+G D  +++S APYKVYNIGNN+PV+LM+F+EAIE+KLGK   
Sbjct  225  EAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEAR  284

Query  301  KNFLPLQAGDVPATFADVSDLVEDLGYKPATPIQEGIDTFVDWYVEFY  348
            KN++ LQ+GDVP T+A+V DL  D+++KP T IQ+G++ FVDWY+E+Y
Sbjct  285  KNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

37) TEH_04020 in NC_016052


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  367 bits (1378),  Expect = 5e-103, Method: Compositional matrix adjust.
 Identities = 211/334 (64%), Positives = 274/334 (83%), Gaps = 1/334 (0%)

Query  1    MKILVTGAAGFIGFHLSKAILKKENEVIGIDNLNDYYEQDLKISRLDILKEIDGFTFHKL  60
            MKIL+TG+AGFIG HL+K ++K+ + VIG+D++NDYY   LK  RL  +   + FTF+K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DLKDKADVDTIFEKYKPEYVVNLAAQAGVRYSIENPYAYIDSNLVGFMNILEACRHFPVK  120
             L +  D+  +F   +PE VVNLAAQAGVRYSIENP +YIDSN+VGFMNILE  RHF ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLLYASSSSVYGGNKVVPFSTDHNVDHPVSLYAATKKSNELMAHAYSHLYGIPTTGLRFF  180
            +L+YASSSSVYG+N   PFST +N+DHP+SLYAATKKSNELMAH+YSHLY +PTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPYGRPDMAYFSFTQNILSEKPIKVFNHGKMERDFTYVDDIVEGIDKLIPLAPEANS  240
            TVYGP GRPDMA F FT+ I+++++I V+NHG+M RDFTYVDDIVE+I +L+  ++ +N 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWNESENDLSTSFAPYKVYNIGNNNPVPLMRFINALETALGKEAEKIYMDMQPGDVMKTY  300
            +W+ ++ D ++S+APYKVYNIGNN+PV LM F++A+E  LGKEA K YMD+QPGDV  TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADVSDLERDINFKPSTSIEDGLQKFVDWYKEYYQ  334
            A+V DL RDI+FKP T+I+DG++KFVDWY EYY+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

38) Nitsa_1999 in NC_014935


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  366 bits (1375),  Expect = 1e-102, Method: Compositional matrix adjust.
 Identities = 215/350 (62%), Positives = 278/350 (80%), Gaps = 17/350 (4%)

Query  1    MKILVTGTAGFIGFHLAKRLLERGDEVVGLDNINDYYDPKVKYGRLRETGIEGDEAIEYA  60
            MKIL+TGTAGFIG HLAK+L+ +G+ V+G+D+INDYY   +K +RL+  G E        
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE--------  52

Query  61   KPVQSSRYENYRFIKLNLEDRAAIEELFEKERFDAVCNLAAQAGVRYSLTNPHAYVDSNI  120
                     N+ F K++LE+   +  +F  E+ + V NLAAQAGVRYS+ NP++Y+DSNI
Sbjct  53   ---------NFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNI  103

Query  121  VGFVNILEACRHNGVGHLAYASSSSVYGLNETMPFSTHDNVDHPISLYAASKKSNELMAH  180
            VGF+NILE  RH  + +L YASSSSVYG N + PFST DN+DHP+SLYAA+KKSNELMAH
Sbjct  104  VGFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAH  163

Query  181  TYSHLYGLPTTGLRFFTVYGPWGRPDMALFLFTKAILEDRPIDVYNYGEMQRDFTYVDDI  240
            TYSHLY LPTTGLRFFTVYGPWGRPDMALF FTKAI++D++IDVYN G+M RDFTYVDDI
Sbjct  164  TYSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDI  223

Query  241  VEGLVRVIDHPPKGNPEWSGKAPDPGSSRAPYKIYNIGNNNPVKLMDFITAIEEAIGKEA  300
            VE++ R++  P+  N EWSG  PDPGSS APYK+YNIGNN+PV+LM+F+ AIE+ +GKEA
Sbjct  224  VEAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEA  283

Query  301  KKNLLPIQPGDVPATYADVSDLIEDLGYKPETPIKEGINRFVEWYRQFYN  350
            +KN + +QPGDVP TYA+V DL+ D+++KPET I++G+N+FV+WY ++Y+
Sbjct  284  RKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

39) XBJ1_2433 in NC_013892


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  366 bits (1374),  Expect = 1e-102, Method: Compositional matrix adjust.
 Identities = 196/335 (59%), Positives = 276/335 (83%), Gaps = 1/335 (0%)

Query  1    MKFLVTGSAGFIGFHVSQRLLSMGHEVVGIDNINDYYDVNLKQSRLNLLLPHTNFQFEKL  60
            MK+L+TG+AGFIG H++++L+  GH V+G+D+INDYY V+LK+ RL+ +    NF F+K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  61   DLADRIAISELFVKHQFQRVIHLGAQPGVRYSIQNPMAYIDANIVGHINILEGCRHNRVE  120
             L +   +S +FV +Q + V++L+AQ+GVRYSI+NP +YID+NIVG +NILE  RH  ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLLYASSSSVYGLNKKQPFSTNDSVDHPVSLYAATKKADELMSHSYSHLYQLPTTGLRFF  180
            +L+YASSSSVYG N  +PFST+D++DHP+SLYAATKK++ELM+H+YSHLY+LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTKAMLEGRSIDVYNHGNMVRDFTYIDDIVESIIRLQDIIPIPNK  240
            TVYGPWGRPDMALFKFTKA++++++IDVYNHGNM+RDFTY+DDIVE+I RL    + PNK
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWLVEDGEISSSSAPYRIYNIGNGQPTKLGDFIEAIEASLGINAKKNFMEIQDGDVLSTC  300
            +W   D + +SS APY++YNIGN  P +L +F+EAIE  LG +A+KN+M++Q GDV  T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADSNTLYDKIGFSPDTPVKEGVKRFVDWYLDFYQK  335
            A+ + L+  I+F P+T +++GV++FVDWYL++Y+K
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

40) Halsa_0060 in NC_014654


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  366 bits (1377),  Expect = 6e-103, Method: Compositional matrix adjust.
 Identities = 205/330 (63%), Positives = 273/330 (83%), Gaps = 1/330 (0%)

Query  6    LVTGAAGFIGFHTSKKLLEEGQQVIGLDNLNDYYSVQLKKDRLAILKEYDNFIFIKGDLE  65
            L+TG+AGFIG H +KKL+ +G+ VIG+D++NDYYSV LK DRL  +   +NF F K  LE
Sbjct  4    LITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKVKLE  62

Query  66   NNKLVANTFAKYKPEIVINLAAQAGVRYSLKNPHSYIDSNLVGFMNILEGCRHHDVEHLI  125
            N   +++ F   +PE+V+NLAAQAGVRYS+ NP++YIDSN+VGFMNILE  RH ++++LI
Sbjct  63   NYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNLI  122

Query  126  FASSSSVYGSNEKVPFSTTDNVDHPVSLYAATKKSNELMAHSYSHLYDLPVTGLRFFTVY  185
            +ASSSSVYG+N   PFST+DN+DHP+SLYAATKKSNELMAH+YSHLY+LP TGLRFFTVY
Sbjct  123  YASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTVY  182

Query  186  GPWGRPDMALFIFAENMLKGKPIQVFNHGDMKRDFTYVDDVVKGIYKLTSLPAQPDNSWN  245
            GPWGRPDMALF F+  ++++++I+V+NHG+M RDFTYVDD+V +I +L   PA P++ W+
Sbjct  183  GPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEWS  242

Query  246  GKDPNPGTSKAPYRIYNIGNNSPVNLMDFIECIEDELGIEAEKEFKPMQPGDVKMTYADV  305
            G DP+PG+S APY++YNIGNNSPV LM+F+E IE+ LG EA K++  +QPGDV  TYA+V
Sbjct  243  GADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYANV  302

Query  306  KDLIEDVGYKPETPLKTGVKRFIDWYREYY  335
             DL+ D+++KPET ++ GV++F+DWY EYY
Sbjct  303  DDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

41) Cvib_1219 in NC_009337


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  366 bits (1377),  Expect = 6e-103, Method: Compositional matrix adjust.
 Identities = 200/333 (61%), Positives = 273/333 (82%), Gaps = 1/333 (0%)

Query  15   MKVLVTGAAGFIGSNVSRRLLERGDRVTGIDNMNDYYDVSLKEARLERLTGQENFRFVKM  74
            MK+L+TG+AGFIGS+++++L+ +G+ V G+D++NDYY VSLKE RL  + G+ENF F K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  75   DLADRKAMEELFAEGGFDRVVNLAAQAGVRYSLINPHSYIESNILGFTNILEGCRHNGVE  134
             L +   +  +F +   + VVNLAAQAGVRYS+ NP++YI+SNI+GF NILE  RH  ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  135  HLVYASSSSVYGANETMPFSVHDNVDHPLSLYAASKKANELMAHTYSHLYQLPTTGLRFF  194
            +L+YASSSSVYGAN + PFS  DN+DHPLSLYAA+KK+NELMAHTYSHLY+LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  195  TVYGPWGRPDMALFLFTDAIIKGKPIKVFNYGKHRRDFTYIDDIVEGVIRTLDHVAEPNP  254
            TVYGPWGRPDMALF FT AI+++++I V+N G+  RDFTY+DDIVE++ R +   A PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  255  DWSGLQPDPGSSRAPWRVYNIGNSKPVELMDYIGALERELGKTAEKEFLPLQPGDVPDTY  314
            +WSG +PDPGSS AP +VYNIGN+ PV LM+++ A+E  LGK A K+++ LQPGDVP+TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  315  ADVEQLMEDVQYKPQTSVDEGIKRFVVWYREYY  347
            A+V++L  D+++KP+T++++G+++FV WY EYY
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

42) capI in NC_018268


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  366 bits (1376),  Expect = 7e-103, Method: Compositional matrix adjust.
 Identities = 205/334 (62%), Positives = 281/334 (85%), Gaps = 1/334 (0%)

Query  1    MKILVTGSAGFIGFHLAQRLLDRGDEVIGVDNLNDYYDVNLKEARLARLTGKADFTEVRQ  60
            MKIL+TG+AGFIG HLA++L+ +G+ VIGVD++NDYY V+LKE RL  + GK +FT  + 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  61   NIADRDLMAALFEEHKPERVVHLAAQAGVRYSIENPHAYVDANLVGFMNILEGCRRNDVQ  120
            ++ + D ++ +F +++PE VV+LAAQAGVRYSIENP++Y+D+N+VGFMNILE  R+ ++Q
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGANEAMPFSVHDNVDHPLSLYAASKKANELMAHTYSHLYNLPTTGLRFF  180
            +L+YASSSSVYGAN + PFS  DN+DHPLSLYAA+KK+NELMAHTYSHLYNLPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMAPFIFTKKILAGEPIDVFNHGHHKRDFTYIDDIVEGVVRTLDQIAQPNP  240
            TVYGPWGRPDMA F FTK I+ +++IDV+NHG+  RDFTY+DDIVE++ R + + A PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  QWSGAQPDPSTSRGPYRIYNIGSNNPVELARFIETIEQCTGKKAEKNLLPMQPGDVVATY  300
            +WSGA+PDP++S +PY++YNIG+N+PV L  F+E+IE+  GK A KN + +QPGDV  TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ANVDGLINDVGYKPETQLEQGIEHFVQWYRDFYQ  334
            ANVD+L+ D+++KPET +++G++ FV+WY ++Y+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

43) uge in NC_007498


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  366 bits (1375),  Expect = 8e-103, Method: Compositional matrix adjust.
 Identities = 204/333 (62%), Positives = 279/333 (84%), Gaps = 1/333 (0%)

Query  3    KILVTGAAGFIGFHLAKVLLERGDDVVGLDNLNDYYDVSLKQARLAQLEGLSRFRFIKCD  62
            KIL+TG+AGFIG HLAK L+ +G+ V+G+D++NDYY VSLK+ RL  + G   F F K  
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKVK  60

Query  63   LADREGIARLFREEKFDRVVNLAAQAGVRYSLKNPHAYVDSNLVGFVNILEGCRHNDVKH  122
            L + ++++++F +E+ + VVNLAAQAGVRYS+ NP++Y+DSN+VGF+NILE  RH ++++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  123  LVYASSSSVYGANTSMPFSIHHNVDHPVSLYAASKKANELMAHTYAHLYRLPVTGLRFFT  182
            L+YASSSSVYGANTS PFS  +N+DHP+SLYAA+KK+NELMAHTY+HLY LP TGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  183  VYGPWGRPDMALFLFSKAILEGRPIDVFNYGKMQRDFTYIDDIVEGVVRTLDHTAFSNPD  242
            VYGPWGRPDMALF F+KAI+++++IDV+N G+M RDFTY+DDIVE++ R +   A +N +
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  243  WSGDHPDPGTSSAPYRLYNIGNNNPVELLALIQTLEKALGKTAEKNLLPMQPGDVPATYA  302
            WSG +PDPG+S APY++YNIGNN+PV L+ +++++E+ LGK A KN + +QPGDVP TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  303  DVDDLTRDVGFKPSTSIEDGVAKFVQWYRDYFQ  335
            +VDDL RD++FKP T+I+DGV KFV+WY +Y++
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

44) uge in NC_021232


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  366 bits (1375),  Expect = 9e-103, Method: Compositional matrix adjust.
 Identities = 206/333 (62%), Positives = 277/333 (84%), Gaps = 0/333 (0%)

Query  1    MKFLVTGAAGFIGFHVSKRLLNDGHQVVGIDNINDYYDVKLKESRLEQLESPSFTFYKLD  60
            MK+L+TG+AGFIG H++K+L+++GH V+G+D+INDYY V LKE RL  +   +FTF K+ 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  61   LADRDGMSKLFETEQFERVIHLAAQAGVRYSLENPYAYADSNLTGYLNILEGCRHNKVQH  120
            L + D++SK+F  EQ E V++LAAQAGVRYS+ENP +Y DSN+ G++NILE  RH ++Q+
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  121  LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYSIPTTGLRFFT  180
            L+YASSSSVYG N   PFST D++DHP+SLYAATKK+NELMAHTYSHLY++PTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  181  VYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIVEAIVRIQDVIPQPDPE  240
            VYGPWGRPDMALFKFTKA++++++IDVYN G+M RDFTY+DDIVEAI R+    + P+ E
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  241  WTVEEGSPATSSAPYRVYNIGNSSPVELMDYINALEQALGLEAKKNMMPIQPGDVLNTSA  300
            W+  +  P++S APY+VYNIGN+SPV LM++++A+E+ LG EA+KN M +QPGDV +T A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  301  ETQALYETIGFKPETPVQQGVKNFVDWYKEYYQ  333
            + + L+  I+FKPET +Q+GV++FVDWY EYY+
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

45) Desac_0239 in NC_015388


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  365 bits (1371),  Expect = 2e-102, Method: Compositional matrix adjust.
 Identities = 200/331 (61%), Positives = 272/331 (83%), Gaps = 0/331 (0%)

Query  3    KILITGAAGFIGAHLAQRLVQQGDQIIGIDNLNDYYDPQLKIDRLKMIERGNFEFIKLDL  62
            KILITG+AGFIG+HLA++L++QG+ +IG+D++NDYY   LK DRLK I + NF F K+ L
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVKL  61

Query  63   ADKRGMADLFARHRFDMVVNLAAQAGVRYSLANPYAYVESNVFGFLNILEGCRHQQVKHL  122
             +  +++ +F  ++ ++VVNLAAQAGVRYS+ NP +Y++SN+ GF+NILE  RH ++++L
Sbjct  62   ENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNL  121

Query  123  VFASSSSVYGANTNMPFSVHQNVDHPMSLYAATKKANELMAHTYASLYGLPTTGLRFFTV  182
            ++ASSSSVYGANT+ PFS  +N+DHP+SLYAATKK+NELMAHTY+ LY LPTTGLRFFTV
Sbjct  122  IYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTV  181

Query  183  YGPWGRPDMALFLFTRAILSGTPLDVFNYGKMQRDFTYIDDIGEGVRRVLDHLPEPNPRW  242
            YGPWGRPDMALF FT+AI+++ ++DV+N G+M RDFTY+DDI E++ R++   + PN  W
Sbjct  182  YGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEW  241

Query  243  RGDNPDPASSYAPYKLYNIGNNNPVELMYFINVIEDALGKKAVKNMLPMQPGDVPATYAD  302
             G +PDP+SSYAPYK+YNIGNN+PV LM F++ IE+ LGK A KN + +QPGDVP TYA+
Sbjct  242  SGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYAN  301

Query  303  IDDLMQAVGFKPQTPIEVGIRKFIDWYKKYY  333
            +DDL + ++FKP+T I+ G+ KF+DWY  YY
Sbjct  302  VDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

46) Dvul_0038 in NC_008751


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  365 bits (1370),  Expect = 2e-102, Method: Compositional matrix adjust.
 Identities = 203/333 (61%), Positives = 272/333 (82%), Gaps = 1/333 (0%)

Query  1    MHVLVTGAAGFIGFHLSRRLLAEGHTVVGLDNLNDYYSVQLKRDRLALLEDHRGFSFAEI  60
            M +L+TG+AGFIG HL+++L+ +GH V+G+D++NDYYSV LK DRL  +  +  F+F  +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKV  59

Query  61   DMAHDDDMDQLFEREGFTHVVNLAAQAGVRYSIKNPRSYVQSNLVGFGNILEGCRHNQVK  120
             + + DD+ ++F  E    VVNLAAQAGVRYSI NPR+Y++SN+VGF NILE  RH +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGLNTTMPFSVHDNVDHPISLYAASKKANELMAHTYSHLYRLPTTGLRFF  180
            +L+YASSSSVYG NT+ PFS  DN+DHP+SLYAA+KK+NELMAHTYSHLY LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFLFTKAILEGRPIDVFNHGQMRRDFTYIDDIVEGVLRVMKLNPTPNP  240
            TVYGPWGRPDMALF FTKAI+++++IDV+NHG+M RDFTY+DDIVE++ R++K  ++PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  AWTGSAPDPSTSTAPYRIYNIGNNNTVELGRFIEVLEECLGKKAVKNMLPMQPGDVAATY  300
             W+G+ PDP++S APY++YNIGNN+ V L  F+E +E+ LGK A KN + +QPGDV+ TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADVDDLIADTGFRPATTVEEGVAAFVAWYREYY  333
            A+VDDL+ D +F+P TT+++GV  FV WY EYY
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

47) capI in NC_019954


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  364 bits (1369),  Expect = 3e-102, Method: Compositional matrix adjust.
 Identities = 206/332 (63%), Positives = 279/332 (85%), Gaps = 1/332 (0%)

Query  13   RYFVTGAAGFIGFHLSKRLLKEDCQVIGLDNLNDYYDVNLKRARLDILKQDGNFQFIYAN  72
            + ++TG+AGFIG HL+K+L+K++  VIG+D++NDYY V+LK  RL  + ++ NF F   +
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKVK  60

Query  73   LEDKDAIDKVFKEYKINIVVNLAAQAGVRYSLKNPYAYIQSNIVGFMNILEACRYNKVEH  132
            LE+ D + KVF + + ++VVNLAAQAGVRYS+ NP +YI+SNIVGFMNILE  R  ++++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  133  LVYASSSSVYGSNEKMPFSTSDNVDHPISLYAATKKSNELMAHTYSHLYGIPTTGLRFFT  192
            L+YASSSSVYG+N   PFSTSDN+DHP+SLYAATKKSNELMAHTYSHLY +PTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  193  VYGPWGRPDMALFLFTKAILNDEPIKVFNYGKMERDFTYVDDIIEGVIRVISNPPKLNEN  252
            VYGPWGRPDMALF FTKAI+ND++I V+N G+M RDFTYVDDI+E++ R++ +P+  N +
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  253  FNRLNPNPSTSFAPYKIYNIGNNHPVKLIEFIEILERHLGKKAKKEYLPLQAGDVPKTYA  312
             +  +P+P++S+APYK+YNIGNN PV+L+EF+E +E  LGK A+K+Y+ LQ+GDVP TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  313  DVDDLVRDVGFKPNTSVDEGIRKFVEWYREYY  344
            +VDDL RD++FKP+T++++G+ KFV+WY EYY
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

48) TepRe1_1767 in NC_015519


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  364 bits (1369),  Expect = 3e-102, Method: Compositional matrix adjust.
 Identities = 206/332 (63%), Positives = 279/332 (85%), Gaps = 1/332 (0%)

Query  13   RYFVTGAAGFIGFHLSKRLLKEDCQVIGLDNLNDYYDVNLKRARLDILKQDGNFQFIYAN  72
            + ++TG+AGFIG HL+K+L+K++  VIG+D++NDYY V+LK  RL  + ++ NF F   +
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKVK  60

Query  73   LEDKDAIDKVFKEYKINIVVNLAAQAGVRYSLKNPYAYIQSNIVGFMNILEACRYNKVEH  132
            LE+ D + KVF + + ++VVNLAAQAGVRYS+ NP +YI+SNIVGFMNILE  R  ++++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  133  LVYASSSSVYGSNEKMPFSTSDNVDHPISLYAATKKSNELMAHTYSHLYGIPTTGLRFFT  192
            L+YASSSSVYG+N   PFSTSDN+DHP+SLYAATKKSNELMAHTYSHLY +PTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  193  VYGPWGRPDMALFLFTKAILNDEPIKVFNYGKMERDFTYVDDIIEGVIRVISNPPKLNEN  252
            VYGPWGRPDMALF FTKAI+ND++I V+N G+M RDFTYVDDI+E++ R++ +P+  N +
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  253  FNRLNPNPSTSFAPYKIYNIGNNHPVKLIEFIEILERHLGKKAKKEYLPLQAGDVPKTYA  312
             +  +P+P++S+APYK+YNIGNN PV+L+EF+E +E  LGK A+K+Y+ LQ+GDVP TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  313  DVDDLVRDVGFKPNTSVDEGIRKFVEWYREYY  344
            +VDDL RD++FKP+T++++G+ KFV+WY EYY
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

49) Metme_1267 in NC_015572


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  364 bits (1368),  Expect = 3e-102, Method: Compositional matrix adjust.
 Identities = 206/336 (62%), Positives = 278/336 (83%), Gaps = 3/336 (0%)

Query  1    MKIMVTGTAGFIGNHLALRLLERGDEVIGIDNLNDYYDVNLKINRLARI-KDHAAFTDVR  59
            MKI++TGTAGFIG+HLA +L+ +G+ VIG+D++NDYY V+LK +RL  I K++ +F  V+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  60   LDIADRAGMEAAFKKHRPQKVVNLAAQAGVRYSLENPHAYIDSNIVGFINILEGCRHNGV  119
            L+  D  ++   F  ++P+ VVNLAAQAGVRYS+ENP++YIDSNIVGF+NILE  RH  +
Sbjct  61   LENYD--DLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNI  118

Query  120  EHLVYASSSSVYGANESMPFSVHDNVDHPLSLYAASKKANELMAHTYSNLYQLPTTGLRF  179
            ++L+YASSSSVYGAN S PFS  DN+DHPLSLYAA+KK+NELMAHTYS+LY+LPTTGLRF
Sbjct  119  QNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRF  178

Query  180  FTVYGPWGRPDMALFLFTKAILAGKPIDVFNYGKHRRDFTYIDDIVEGVIRTLDHTARAN  239
            FTVYGPWGRPDMALF FTKAI+ +++IDV+N G+  RDFTY+DDIVE++ R +   A +N
Sbjct  179  FTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPN  238

Query  240  PDWSGGKPDPGTSKSPWRVYNIGNQNPVELLAYIETLERFLGKTAEKNLLPLQPGDVPDT  299
             +WSG+ PDPG+S +P +VYNIGN++PV L+ ++E++E  LGK A KN + LQPGDVP+T
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPET  298

Query  300  YADVEALVTDVGYKPSTTIEQGIERFVTWYREYYRQ  335
            YA+V+ L  D+++KP TTI++G+++FV WY EYY++
Sbjct  299  YANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

50) DVU3356 in NC_002937


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  364 bits (1369),  Expect = 3e-102, Method: Compositional matrix adjust.
 Identities = 202/333 (61%), Positives = 272/333 (82%), Gaps = 1/333 (0%)

Query  1    MHVLVTGAAGFIGFHLSRRLLAEGHTVVGLDNLNDYYSIQLKRDRLALLEDHRGFSFAEI  60
            M +L+TG+AGFIG HL+++L+ +GH V+G+D++NDYYS+ LK DRL  +  +  F+F  +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKV  59

Query  61   DMAHDDDMDQLFEREGFTHVVNLAAQAGVRYSIKNPRSYVQSNLVGFGNILEGCRHNQVK  120
             + + DD+ ++F  E    VVNLAAQAGVRYSI NPR+Y++SN+VGF NILE  RH +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGLNTTMPFSVHDNVDHPISLYAASKKANELMAHTYSHLYRLPTTGLRFF  180
            +L+YASSSSVYG NT+ PFS  DN+DHP+SLYAA+KK+NELMAHTYSHLY LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFLFTKAILEGRPIDVFNHGQMRRDFTYIDDIVEGVLRVMKLNPTPNP  240
            TVYGPWGRPDMALF FTKAI+++++IDV+NHG+M RDFTY+DDIVE++ R++K  ++PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  AWTGSAPDPSTSTAPYRIYNIGNNNTVELGRFIEVLEECLGKKAVKNMLPMQPGDVAATY  300
             W+G+ PDP++S APY++YNIGNN+ V L  F+E +E+ LGK A KN + +QPGDV+ TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADVDDLIADTGFRPATTVEEGVAAFVAWYREYY  333
            A+VDDL+ D +F+P TT+++GV  FV WY EYY
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

51) Deval_3097 in NC_017310


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  364 bits (1369),  Expect = 3e-102, Method: Compositional matrix adjust.
 Identities = 202/333 (61%), Positives = 272/333 (82%), Gaps = 1/333 (0%)

Query  1    MHVLVTGAAGFIGFHLSRRLLAEGHTVVGLDNLNDYYSIQLKRDRLALLEDHRGFSFAEI  60
            M +L+TG+AGFIG HL+++L+ +GH V+G+D++NDYYS+ LK DRL  +  +  F+F  +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKV  59

Query  61   DMAHDDDMDQLFEREGFTHVVNLAAQAGVRYSIKNPRSYVQSNLVGFGNILEGCRHNQVK  120
             + + DD+ ++F  E    VVNLAAQAGVRYSI NPR+Y++SN+VGF NILE  RH +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGLNTTMPFSVHDNVDHPISLYAASKKANELMAHTYSHLYRLPTTGLRFF  180
            +L+YASSSSVYG NT+ PFS  DN+DHP+SLYAA+KK+NELMAHTYSHLY LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFLFTKAILEGRPIDVFNHGQMRRDFTYIDDIVEGVLRVMKLNPTPNP  240
            TVYGPWGRPDMALF FTKAI+++++IDV+NHG+M RDFTY+DDIVE++ R++K  ++PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  AWTGSAPDPSTSTAPYRIYNIGNNNTVELGRFIEVLEECLGKKAVKNMLPMQPGDVAATY  300
             W+G+ PDP++S APY++YNIGNN+ V L  F+E +E+ LGK A KN + +QPGDV+ TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADVDDLIADTGFRPATTVEEGVAAFVAWYREYY  333
            A+VDDL+ D +F+P TT+++GV  FV WY EYY
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

52) Exig_2625 in NC_010556


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  364 bits (1369),  Expect = 3e-102, Method: Compositional matrix adjust.
 Identities = 202/335 (61%), Positives = 276/335 (83%), Gaps = 3/335 (0%)

Query  5    KILITGALGFIGFHLSNKLLSMGIEVIGLDNENNYYDVNLKKNRFEKIKSDYKDSFYFYK  64
            KILITG+ GFIG HL++KL+  G  VIG+D+ N+YY V+LK +R+  I    K++F F K
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG---KENFTFNK  58

Query  65   IDITDREKLNTLFEKHNIEIVINLAAQAGVRYSIENPYAYLDSNLTGFLNILEACRNYPV  124
            + + + + L+ +F  ++ E+V+NLAAQAGVRYSIENP +Y+DSN+ GF+NILE  R++ +
Sbjct  59   VKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNI  118

Query  125  KHLLYASSSSVYGGNKVAPFSTNHNVDHPVSLYAATKKSNELMAHTYSHLYDIPTTGLRF  184
            ++L+YASSSSVYG+N   PFST++N+DHP+SLYAATKKSNELMAHTYSHLY++PTTGLRF
Sbjct  119  QNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRF  178

Query  185  FTVYGPWGRPDMAYFSFTKDIVEGNPIKVFNHGKMERDFTYIDDIVEGIVKLIPRAPQKN  244
            FTVYGPWGRPDMA F FTK IV++++I V+NHG+M RDFTY+DDIVE+I +L+ +++  N
Sbjct  179  FTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPN  238

Query  245  PDWDESKDELGASFAPYRVYNIGNNQPVQLMKFINVLEEKIGKEANKKYMEMQPGDVLRT  304
             +W  +  + G+S+APY+VYNIGNN PV+LM F++ +E+K+GKEA K+YM++QPGDV  T
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPET  298

Query  305  YADVSELERDIDFKPSTSIEEGLGKFVDWYKEYYN  339
            YA+V +L RDIDFKP T+I++G+ KFVDWY EYY+
Sbjct  299  YANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

53) Sfum_0179 in NC_008554


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  364 bits (1369),  Expect = 3e-102, Method: Compositional matrix adjust.
 Identities = 194/334 (59%), Positives = 274/334 (83%), Gaps = 1/334 (0%)

Query  1    MNILVTGAAGFIGYHLAYRLLKDGNTVIGLDNVNDYYDVNLKRNRLKRLAPFQSFAFLKL  60
            M+IL+TG+AGFIG HLA +L+K+G+ VIG+D++NDYY V+LK +RLK ++  ++F+F K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DLHDTAGIEAMFRENAFDAVVHLAAQAGVRHSLTHPHSYVESNLTGFVNILEGCRHHRIK  120
             L++  ++  +F ++  + VV+LAAQAGVR S+ +P++Y++SN+ GF+NILE  RH  I+
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVFASSSSVYGANVVMPLSVHHNVDHPLSLYAATKKANELMAHTYAHLFGVPCTGLRFF  180
            +L++ASSSSVYGAN   P+S  +N+DHPLSLYAATKK+NELMAHTY+HL+ +P TGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFLFTRAILAGEPIRIFNYGRMRRDFTYIDDIIEGVVRMIPAPPSPNP  240
            TVYGPWGRPDMALF FT+AI+ +++I ++N G M RDFTY+DDI+E++ R++  P+SPN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  QWDRESSDPATSYAPYRVYNIGNNRPVELMEYVAAIESCLGKEAQKEFLPLQPGDVPATC  300
            +W    +DP++SYAPY+VYNIGNN PV LME+V AIE+ LGKEA+K+++ LQPGDVP T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADVSDLERDFGFRPSTTIQEGITRFIEWYRAYYS  334
            A+V DL RD++F+P TTIQ+G+ +F++WY  YY 
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

54) capI [H] in NC_019902


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  364 bits (1368),  Expect = 3e-102, Method: Compositional matrix adjust.
 Identities = 196/334 (59%), Positives = 273/334 (82%), Gaps = 1/334 (0%)

Query  1    MRILVTGTAGFIGNALALRLLERGDEVVGVDNLNDYYDVNLKKARLARVAGHPGFTDLRI  60
            M+IL+TGTAGFIG+ LA +L+ +G+ V+GVD++NDYY V+LK  RL  + G   FT  ++
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  61   DLADRDAIAKAFAEHRPQRVVNLAAQAGVRYSLENPHAYVDTNLVGFVNLLEGCRHNGVE  120
             L + D ++K F +++P+ VVNLAAQAGVRYS+ENP++Y+D+N+VGF+N+LE  RH  ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVFASSSSVYGANTKQPFSVHHNVDHPLSLYAASKKANELMAHTYANLYGLPVTGLRFF  180
            +L++ASSSSVYGANT +PFS  +N+DHPLSLYAA+KK+NELMAHTY++LY LP TGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFLFTKAILEGRPIDVFNYGHHRRDFTYIDDIVEGVIRTLDHVAEPNP  240
            TVYGPWGRPDMALF FTKAI+++++IDV+N G+  RDFTY+DDIVE++ R +   A PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  GWDSDRPDPGTSRAPYRLYNIGNQQPVELMHYIEVLEDCLGRKAEKNLLPLQAGDVPDTY  300
             W +  PDPG+S APY++YNIGN+ PV LM+++E +E+ LG+ A KN + LQ+GDVP+TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADVEDLVRDVDYRPQTPVEEGVARFVSWYREFYS  334
            A+V+DL RD+D++P+T +++GV +FV WY E+Y 
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

55) Hden_3127 in NC_014313


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  364 bits (1366),  Expect = 5e-102, Method: Compositional matrix adjust.
 Identities = 197/333 (60%), Positives = 269/333 (81%), Gaps = 1/333 (0%)

Query  1    MKFLVTGVAGFIGFHTAERLLARGDVVIGVDNINDYYDPKLKEARLAKLEGRNGFSFHRL  60
            MK+L+TG AGFIG H A +L+ +G+ VIGVD+INDYY   LKE RL  + G++ F+F+++
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  61   NIADGAAMAALFQSERPEKVIHLAAQAGVRYGQENPGAYIESNIVGTQSILEGCRHNDVK  120
            ++ +   ++ +F  E+PE V++LAAQAGVRY+ ENP +YI+SNIVG  +ILE  RH +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVLASSSSVYGANTAMPFSIHDNVDHPLSLYAATKKSNELTAHTYAYLYQLPVTALRFF  180
            +L+ ASSSSVYGANT+ PFS  DN+DHPLSLYAATKKSNEL AHTY+ LY+LP T+LRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTRQILAGEPIEVFNNGHHARDFTYIDDIVEGVLRTADKIANPNP  240
            TVYGPWGRPDMALFKFT+ I+ +++I+V+N+G+  RDFTY+DDIVE++ R   K A+PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWSGEKPDPATSMAPYRVYNIGNNSPVELMDFIAATERAVGRESKKIFLPMQPGDVPTTF  300
            +WSG  PDP++S APY+VYNIGNNSPV LM+F+ A E  +G+E++K ++ +QPGDVP T+
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADVDDLVRDVGFKPATPLEEGIARFVAWYRSYY  333
            A+VDDL RD++FKP T +++G+ +FV WY  YY
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

56) TK90_1835 in NC_013889


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  363 bits (1364),  Expect = 6e-102, Method: Compositional matrix adjust.
 Identities = 199/334 (60%), Positives = 272/334 (82%), Gaps = 1/334 (0%)

Query  1    MRILVTGSAGFIGSALALRLLERGDEVIGVDNLNDYYDVSLKEARLARTQDHPGYTEVRE  60
            M+IL+TG+AGFIGS LA +L+ +G+ VIGVD++NDYY VSLKE RL ++ +   +T  + 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRL-KSIGKENFTFNKV  59

Query  61   DIADRAAMERVFREHRPERVVNLAAQAGVRYSLENPAAYVDTNLVGFGNILEGCRHFGVE  120
             + +   + +VF +++PE VVNLAAQAGVRYS+ENP +Y+D+N+VGF NILE  RHF ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGANTTMPFSVHDNVDHPLSLYAASKKANELMAHTYSHLYDLPVTGLRFF  180
            +L+YASSSSVYGANT+ PFS  DN+DHPLSLYAA+KK+NELMAHTYSHLY+LP TGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFLFTKKILAGEPIDVFNYGHHRRDFTYIDDIVEGVIRALDRPARSNP  240
            TVYGPWGRPDMALF FTK I+ +++IDV+N G+  RDFTY+DDIVE++ R + +PA +N 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  AWTGAEPDSATSAAPYRLYNIGAHRPVELMHYIEVLEDCLGCKAEKNLLPLQPGDVPDTY  300
             W+GA+PD+++S APY++YNIG + PV LM+++E +E+ LG  A KN + LQPGDVP+TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADVEALRTDTGYEPTTSVEEGVARFVEWYREYYR  334
            A+V+ L  D ++ P T++++GV +FV+WY EYY+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

57) CTU_23870 in NC_013282


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  363 bits (1364),  Expect = 6e-102, Method: Compositional matrix adjust.
 Identities = 192/334 (58%), Positives = 274/334 (83%), Gaps = 1/334 (0%)

Query  1    MKFLVTGAAGFIGFHVSERLLAAGHQVIGIDNLNDYYDVNLKLARLNLLKQHSAFHFEKI  60
            MK+L+TG+AGFIG H++ +L+  GH VIG+D++NDYY V+LK  RL+ + +++ F F+K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKEN-FTFNKV  59

Query  61   DLADRQAMETLFAQHQPQRVIHLAAQAGVRYSLENPHAYADANLTGHLNVLEGCRHHKVE  120
             L + + +  +F ++QP+ V++LAAQAGVRYS+ENP++Y D+N+ G +N+LE  RH +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMSHTYSHLYGLPTTGLRFF  180
            +L+YASSSSVYG N   PFST D++DHP+SLYAATKK+NELM+HTYSHLY LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTQAIVKGSSIDVYNHGQMRRDFTYIDDIAEAIVRLQDVIPQADP  240
            TVYGPWGRPDMALFKFT+AIV++ +IDVYNHG+M RDFTY+DDI EAI RL    + ++ 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  QWTVENGSPATSSAPYRVYNIGNSSPVALMDYISALEKALGKEAQKNMLPMQPGDVLETS  300
            +W+  +  P++S APY+VYNIGN+SPV LM+++ A+E+ LGKEA+KN + +QPGDV ET 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTSALYKVIGFKPQTSVEEGVKRFVEWYKGFYN  334
            A+   L++ I+FKP+T++++GV++FV+WY  +Y+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

58) Nwat_0479 in NC_014315


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  363 bits (1364),  Expect = 7e-102, Method: Compositional matrix adjust.
 Identities = 199/334 (60%), Positives = 272/334 (82%), Gaps = 1/334 (0%)

Query  1    MKIMVTGSAGFIGAALTEKLLKRGDEVIGVDNLNDYYDVDLKRARLARFQNDSAFTEVPI  60
            MKI++TG+AGFIG+ L+ KL+K+G+ VIGVD++NDYY V LK  RL  + +++ FT   +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKEN-FTFNKV  59

Query  61   GLENREALQAIFAKYQPQRVVNLAAQAGVRYSLENPYAYMDSNLYGFLNILENCRHYQVE  120
             LEN + L  +F   QP+ VVNLAAQAGVRYS+ENP +Y+DSN+ GF+NILE  RH++++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVFASSSSVYGANTKMPYAVQDNVDHPLSLYAASKKANELMAHTYSHLYRLPTTGLRFF  180
            +L++ASSSSVYGANT  P++  DN+DHPLSLYAA+KK+NELMAHTYSHLY LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTRNILAGKPIEIYNYGRHQRDFTYIDDIVEGVTRTLDRLPTPNT  240
            TVYGPWGRPDMALFKFT+ I+ +++I++YN G   RDFTY+DDIVE+++R + + ++PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  NWNGATPEPNTSSAPYRIYNIGNHQPVELGKFIKILEECLGREAKKNLLPLQPGDVPATY  300
            +W+GA P+P +S APY++YNIGN+ PV L  F+  +E+ LG+EA+KN + LQPGDVP TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADVDDLIQDMEFHPATPIEEGIARFVAWYKNYHK  334
            A+VDDL++D++F P T I++G+ +FV WY +Y K
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

59) Ppha_1748 in NC_011060


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  363 bits (1364),  Expect = 7e-102, Method: Compositional matrix adjust.
 Identities = 198/333 (60%), Positives = 273/333 (82%), Gaps = 1/333 (0%)

Query  1    MNILVTGAAGFIGFHVCKRLLERGERVTGVDNLNDYYDVTLKEARLSMLTPFEGFTFVKA  60
            M+IL+TG+AGFIG H+ K+L+ +G+ V GVD++NDYY V+LKE RL  +   E FTF K 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DISDRAAMEELFGKGKFDGVINLAAQAGVRYSIQNPHSYVESNIVGFLNILEGCRHNDVK  120
             + +   +  +F   + + V+NLAAQAGVRYSI+NP++Y++SNIVGF+NILE  RH +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSIYGSNETMPFSVHDNVDHPLSLYAASKKANELMAHTYSHLYNLPTTGLRFF  180
            +L+YASSSS+YG+N + PFS  DN+DHPLSLYAA+KK+NELMAHTYSHLYNLPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFLFTNAILNNKPIQVFNYGKHRRDFTFIDDITEGVLRTLDHVAVPNP  240
            TVYGPWGRPDMALF FT+AI+N+++I+V+N G+  RDFT++DDI E++ R +   A PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWSGLTPDPGTSKAPWRVYNIGNSNPVELMDYIKALEEQLGRTAIKEFLPLQPGDVPDTY  300
            +WSG  PDPG+S AP +VYNIGN++PV LM+++ A+E++LG+ A K+++ LQPGDVP+TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADVDQLMQDVHYKPETTVPEGIRRFVAWYREYY  333
            A+VD+L +D+++KPETT+ +G+ +FV WY EYY
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

60) lpsL in NC_014355


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  363 bits (1362),  Expect = 9e-102, Method: Compositional matrix adjust.
 Identities = 191/332 (58%), Positives = 268/332 (81%), Gaps = 1/332 (0%)

Query  8    VLVTGAAGFIGSHVSRRLLDRGDTVLGLDNLNDYYDVRLKEARLARLKSHPQFQFVKLDL  67
            +L+TG+AGFIGSH++++L+ +G+ V+G+D++NDYY V LKE RL  + +  +F F K+ L
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKVKL  61

Query  68   SDRAGMAALFEQHAIRRVVHLAAQAGVRYSLVNPHAYTASNVDGFLNILEGCRHHKAEHL  127
             +  +++ +F ++    VV+LAAQAGVRYS+ NP++Y  SN+ GF+NILE  RH + ++L
Sbjct  62   ENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNL  121

Query  128  VYASTSSVYGGHTKMPFSVHDNVDHPVSLYAATKKANELMAHCYAHLYRFPITGLRFFTV  187
            +YAS+SSVYG++T  PFS  DN+DHP+SLYAATKK+NELMAH Y+HLY +P TGLRFFTV
Sbjct  122  IYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTV  181

Query  188  YGPWGRPDMALFLFTKAILEGKPIDVFNHGKMQRDFTYVDDIAEGVLRTLDRPAQADPAW  247
            YGPWGRPDMALF FTKAI+++++IDV+NHG+M RDFTYVDDI E++ R + +PA ++  W
Sbjct  182  YGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEW  241

Query  248  ASDNPDPGSSSAPYRLYNIGNHQPVELLRFIEVLEQTLGMKAQKNFLPLQAGDVPATYAD  307
            ++ +PDPGSS APY++YNIGN+ PV L+ F+E +E+ LG  A+KN++ LQ+GDVP TYA+
Sbjct  242  SGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYAN  301

Query  308  VADLMRDTGFKPATSIETGIARFVEWYREYYK  339
            V DL RD +FKP T+I+ G+ +FV+WY EYYK
Sbjct  302  VDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

61) Riv7116_2164 in NC_019678


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  362 bits (1361),  Expect = 1e-101, Method: Compositional matrix adjust.
 Identities = 204/333 (62%), Positives = 278/333 (84%), Gaps = 1/333 (0%)

Query  3    KILVTGAAGFIGYHLSERLLQRVDEVVGLDNINDYYDVSLKQDRLQQLEEKPGFSFHKLD  62
            KIL+TG+AGFIG HL+ +L+++ + V+G+D+INDYY VSLK+DRL+ +  K  F+F+K+ 
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG-KENFTFNKVK  60

Query  63   LADNGSIAELFNQQKFDIVVNLAAQAGVRHSLENPHAYINSNLVGFTNILEGCRNNKVKH  122
            L + + ++ +F +++ ++VVNLAAQAGVR S+ENP++YI+SN+VGF NILE  R+ ++++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  123  LVFASSSSVYGANTKIPFSVHHNVDHPISLYAASKKSNELMAHCYSHLYNLPTTGLRFFT  182
            L++ASSSSVYGANT  PFS  +N+DHP+SLYAA+KKSNELMAH YSHLYNLPTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  183  VYGPWGRPDMALFLFTKLMLEGKPINIFNNGNMRRDFTYIDDIVEGVVRVIDKIPQLNPN  242
            VYGPWGRPDMALF FTK ++++++I+++N+GNM RDFTY+DDIVE++ R++ K +  N +
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  243  WSGDTPDPGTSKAPYKIYNIGNNQPVELMYMIKVLEDCLGIEAKKNMMPMQPGDVPINYA  302
            WSG  PDPG+S APYK+YNIGNN PV LM  +  +E+ LG EA+KN M +QPGDVP  YA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  303  NVDDLVRDVDFKPNTSIEVGIKNFVDWYRAYYK  335
            NVDDL RD+DFKP+T+I+ G+++FVDWY  YYK
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

62) capI in NC_018645


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  361 bits (1358),  Expect = 2e-101, Method: Compositional matrix adjust.
 Identities = 205/334 (62%), Positives = 272/334 (82%), Gaps = 1/334 (0%)

Query  1    MKILVTGVAGFIGFNLSCRLLKEGHRVYGIDNLNDYYDVNLKKNRLSIIEKDSKFKFILG  60
            MKIL+TG AGFIG +L+ +L+K+GH V G+D++NDYY V+LK +RL  I K++ F F   
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKEN-FTFNKV  59

Query  61   DLADREKIKILFETYQFDYVVNLAAQAGVRYSIENPGSYIDSNLVGFGNILEGCRHSGVK  120
             L + + +  +F   Q + VVNLAAQAGVRYSIENP +YIDSN+VGF NILE  RH  ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGLNTHMPFSVRHNVDHPISLYAASKKANELMAHTYSYLYNLPTTGLRFF  180
            +L+YASSSSVYG NT  PFS  +N+DHP+SLYAA+KK+NELMAHTYS LYNLPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFLFTKAILKNEPIKVFNNGDMQRDFTYIDDIVEGVVRVMHNVPKADP  240
            TVYGPWGRPDMALF FTKAI+++++I V+N+G+M RDFTY+DDIVE++ R++ + + ++ 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWSSDTPNPSSSCVPYKLYNIGNNQPVALMEFVEAIETAIGKKAVKEYLPLQAGDVPATY  300
            +WS+  P+P+SS  PYK+YNIGNN PV LMEFVEAIE  +GK A K+Y+ LQ+GDVP TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADVNDLIKDTGFKPSTSIEEGIQNFVKWYTDYYK  334
            A+V+DL++D +FKP T+I++G+++FV WY +YYK
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

63) ECBG_00498 in NC_020995


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  361 bits (1358),  Expect = 2e-101, Method: Compositional matrix adjust.
 Identities = 203/334 (61%), Positives = 276/334 (83%), Gaps = 1/334 (0%)

Query  1    MKILITGAAGFIGFHLAKKLLNKGFDIDGIDNLNDYYDIRLKNSRLKILRDYDNFYFHKI  60
            MKILITG+AGFIG HLAKKL+++G  + G+D++NDYY + LK+ RLK +   +NF F+K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DLKNKEKVEDYFEKNRPEIVINLAAQAGVRYSIENPYAYIDSNIVGFLNVLEGCRKYPVS  120
             L N + +   F  ++PE+V+NLAAQAGVRYSIENP +YIDSNIVGF+N+LE  R + + 
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLLYASSSSVYGGNTTVPFSTNHNVDHPVSLYAATKKSNELMAHTYSHLFGIPTTGLRFF  180
            +L+YASSSSVYG+NT+ PFST++N+DHP+SLYAATKKSNELMAHTYSHL+ +PTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPYGRPDMAYFSFTKDILEDKEIKVFNHGKMERDFTYIDDIVEGIDKLISKVPQPLE  240
            TVYGP GRPDMA F FTK I++D+ I V+NHG+M RDFTY+DDIVE+I +L+ K + P  
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  EWSDNKNTLDTSFAPYKIYNLGNNNPVPLMRFIKALEKSLGKEAKKKYLEMQPGDVYKTY  300
            EWS+     ++S+APYK+YN+GNN+PV LM F+ A+E+ LGKEA+K+Y+++QPGDV  TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADISDLENEIGFKPVTSIENGLDRFVEWYKNYYN  334
            A++ DL  +I+FKP T+I++G+++FV+WY +YY+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

64) AMEC673_13375 in NC_018678


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  361 bits (1357),  Expect = 2e-101, Method: Compositional matrix adjust.
 Identities = 198/337 (59%), Positives = 279/337 (83%), Gaps = 4/337 (1%)

Query  1    MKILVTGAAGFIGAAVSQYLINRGDHVVGIDNINDYYDVNLKHARLDEIKSSTAADLFSF  60
            MKIL+TG+AGFIG+ +++ LI++G+ V+G+D+INDYY V+LK+ RL  I    + + F+F
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI----GKENFTF  56

Query  61   IEMGVEERDKMAALFEEHKFDRVVHLAAQAGVRYSLENPNAYVDSNIVGFVNILEGCRHN  120
              + +E+ D ++ +F +++ + VV+LAAQAGVRYS+ENP +Y+DSNIVGF+NILE  RH 
Sbjct  57   NKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHF  116

Query  121  KVEHLVYASSSSVYGANETMPFSEQHNVDHQVSLYAASKKANELMAHTYSHLYNLPTTGL  180
            ++++L+YASSSSVYGAN + PFS  +N+DH +SLYAA+KK+NELMAHTYSHLYNLPTTGL
Sbjct  117  NIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGL  176

Query  181  RFFTVYGPWGRPDMALFKFTKAILEGKTIQVYNYGNHRRDFTYIDDIVEGVIRSLDNVAK  240
            RFFTVYGPWGRPDMALFKFTKAI+++++I+VYN GN  RDFTY+DDIVE++ R + + A 
Sbjct  177  RFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPAS  236

Query  241  PNENWDGSNPDPSTSKAPYKVYNIGAQTPVHLLKFIETLESALGIEAKKELLPMQPGDVP  300
            PN +W G++PDP++S APYKVYNIG ++PV+L+ F+E++E+ LG EA+K+ + +QPGDVP
Sbjct  237  PNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVP  296

Query  301  DTYADVSSLVEDTGYQPSTDVETGVKAFVDWYRDFYK  337
            +TYA+V  L  D +++P T ++ GV+ FVDWY ++YK
Sbjct  297  ETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

65) Entas_2795 in NC_015968


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  361 bits (1357),  Expect = 2e-101, Method: Compositional matrix adjust.
 Identities = 196/333 (59%), Positives = 273/333 (82%), Gaps = 0/333 (0%)

Query  1    MKFLVTGAAGFIGFHVSERLLKAGHQVVGIDNLNSYYDVSLKQARLDLLASENFTFRKLD  60
            MK+L+TG+AGFIG H++ +L+K GH V+G+D++N YY VSLK+ RL  ++ ENFTF K+ 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  61   LADREGMTALFAEEKFDRVIHLAAQAGVRYSLENPHVYAESNLIGHLNVLEGCRHNQVQH  120
            L + ++++ +F +E+ + V++LAAQAGVRYS+ENP+ Y +SN++G +N+LE  RH ++Q+
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  121  LVYASSSSVYGLNSKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPTTGLRFFT  180
            L+YASSSSVYG N+  PFST D++DHP+SLYAATKK+NELMAHTYSHLY LPTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  181  VYGPWGRPDMALFKFTKAMLEGNSIDVYNYGKMKRDFTYIDDIVEGIIRLQDVIPQPNPE  240
            VYGPWGRPDMALFKFTKA++++++IDVYN G+M RDFTY+DDIVE+I RL    + PN E
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  241  WTVETGSPASSSAPYHIYNIGNSAPVELMDYITALEEALGTEAKKNMMPVQPGDVLETSA  300
            W+     P+SS APY +YNIGN++PV LM+++ A+E+ LG EA+KN M +QPGDV ET A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  301  DTKPLQDVVGFKPQTSVKEGVKNFVDWYRNFYN  333
            +   L   ++FKP+T++++GV++FVDWY ++Y+
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

66) GAU_2706 in NC_012489


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  361 bits (1358),  Expect = 2e-101, Method: Compositional matrix adjust.
 Identities = 194/333 (59%), Positives = 274/333 (83%), Gaps = 1/333 (0%)

Query  3    KILVTGAAGFIGYNTSERLLARGDAVVGLDNVNDYYDPTLKEARLARLARHPGFRLARLE  62
            KIL+TG+AGFIG + + +L+ +G+ V+G+D++NDYY  +LKE RL  ++++  F + ++ 
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKVK  60

Query  63   LGDREGVERLFREERFDRVIHLAAQAGVRYSITNPHTYIDSNLVGFLHILEGCRHHGVQH  122
            L + +++ ++F +E+ + V++LAAQAGVRYSI NP+TYIDSN+VGF++ILE  RH  +Q+
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  123  LTYASSSSVYGANTAMPFSVHQNIDHPVSLYAATKKANELMAHTYSHLYGLPTTGLRFFT  182
            L YASSSSVYGANT+ PFS  +NIDHP+SLYAATKK+NELMAHTYSHLY LPTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  183  VYGPWGRPDMAMFLFTKAILEGKPIDVFNHGKMQRDFTYIDDIVEGVVRTSDHVAAPNPD  242
            VYGPWGRPDMA+F FTKAI+++++IDV+NHG+M RDFTY+DDIVE++ R     A+PN +
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  243  WNSDRPDPATSKAPYRIYNIGNNNPVELMHLIATLEQALGRTAEKNMLPIQPGDVPATYA  302
            W++  PDP++S APY++YNIGNN+PV LM+++ ++E+ LG+ A KN + +QPGDVP TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  303  DVEALVQDVGFAPRTSIETGVANFVAWYRDYYR  335
            +V+ L +D++F P T+I+ GV +FV WY +YY+
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

67) Spro_2707 in NC_009832


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  361 bits (1357),  Expect = 2e-101, Method: Compositional matrix adjust.
 Identities = 194/334 (59%), Positives = 273/334 (82%), Gaps = 1/334 (0%)

Query  1    MKFLVTGAAGFIGFHVAERLLAAGHQVVGIDNLNDYYDVGLKIARLDLLADKPAFQFIKL  60
            MK+L+TG+AGFIG H+A +L+  GH V+G+D++NDYY V+LK  RL  ++ K  F F K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG-KENFTFNKV  59

Query  61   DLADREGMAQLFAEHQFQRVIHLGAQAGVRYSLDNPLAYADSNLIGHLNVLEGCRHNKVE  120
             L + ++++++F ++Q + V++L+AQAGVRYS++NP +Y DSN++G +N+LE  RH +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLLYASSSSVYGLNRKLPFATEDSVDHPVSLYAATKKANELMSHSYSHLYGLPTTGLRFF  180
            +L+YASSSSVYG N   PF+T D++DHP+SLYAATKK+NELM+H+YSHLY LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTKAILAGESIDVYNHGEMHRDFTYIDDIAEAIVRLQAVIPQANA  240
            TVYGPWGRPDMALFKFTKAI+ +++IDVYNHG+M RDFTY+DDI EAI RL    + +N 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  SWTVEQGSPATSSAPYHVYNIGNSSPVKLMEYISALEQALGIEARKNMLPMQPGDVLDTS  300
             W+  +  P++S APY VYNIGN+SPV+LME++ A+E+ LG EARKN + +QPGDV +T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTVDLYREIGFKPETSVEEGVKRFVEWYKSFYK  334
            A+  DL+R+I+FKPET++++GV++FV+WY  +YK
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

68) Shewmr7_3979 in NC_008322


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  361 bits (1358),  Expect = 2e-101, Method: Compositional matrix adjust.
 Identities = 191/335 (58%), Positives = 269/335 (81%), Gaps = 1/335 (0%)

Query  1    MKYLVTGAAGFIGAKVSERLCAQGHEVVGIDNLNDYYDVGLKLARLAPLETLNNFRFIKL  60
            MK L+TG+AGFIG+ ++ +L  QGH V+G+D++NDYY V+LK  RL ++   +NF F K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DLADRDGIAALFAEQGFQRVIHLAAQAGVRYSLDNPLAYADSNLVGHLTILEGCRHHKIE  120
             L + D+++ +F ++  + V++LAAQAGVRYS++NP +Y DSN+VG + ILE  RH +I+
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGLNQKMPFSTEDSVDHPISLYAATKKANELMSHTYSHLYQLPTTGLRFF  180
            +L+YASSSSVYG N   PFST D++DHP+SLYAATKK+NELM+HTYSHLY+LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTKAILAGDTIDVYNHGDLSRDFTYIDDIVEGIIRVQDKPPRPTP  240
            TVYGPWGRPDMALFKFTKAI+ +++IDVYNHG++ RDFTY+DDIVE+I R+  KP+ P  
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWRVETGTPANSSAPYRVFNIGNGSPVQLLDFITALESALGIEAKKQFLPMQPGDVHSTW  300
            +W      P++S APY+V+NIGN SPV+L++F+ A+E+ LG EA+K+++ +QPGDV  T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTEDLFKAVGYKPQVDINTGVSRFVEWYRAFYAK  335
            A+ +DLF+ +++KP+  I+ GV++FV+WY  +Y K
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

69) wcvA in NC_004347


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  361 bits (1358),  Expect = 2e-101, Method: Compositional matrix adjust.
 Identities = 192/333 (58%), Positives = 269/333 (81%), Gaps = 1/333 (0%)

Query  1    MKYLVTGAAGFIGANVSKRLCAMGHEVVGIDNLNDYYDVALKLARLAPLEALSNFHFIKL  60
            MK L+TG+AGFIG++++K+L   GH V+G+D++NDYY V+LK  RL ++    NF F K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DLADREGIAKLFAQQGFQRVIHLAAQAGVRYSLDNPLAYADSNLVGHLTILEGCRHHKIE  120
             L + ++++K+F ++  + V++LAAQAGVRYS++NP +Y DSN+VG + ILE  RH +I+
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGLNQKMPFSTEDSVDHPISLYAATKKANELMSHTYSHLYQLPTTGLRFF  180
            +L+YASSSSVYG N   PFST D++DHP+SLYAATKK+NELM+HTYSHLY+LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTKAILAGETIDVYNHGDLSRDFTYIDDIVEGIIRVQDKPPSPTP  240
            TVYGPWGRPDMALFKFTKAI+ +++IDVYNHG++ RDFTY+DDIVE+I R+  KP+SP  
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWRVETGTPANSSAPYRVFNIGNGSPVQLLDFITALERALGIEAKKQFLPMQPGDVHATW  300
            +W      P++S APY+V+NIGN SPV+L++F+ A+E  LG EA+K+++ +QPGDV  T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTEDLFKAVGYKSQVDIDTGVAKFVDWYRNFY  333
            A+ +DLF+ +++K++  I+ GV KFVDWY ++Y
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

70) I633_14475 in NC_021716


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  361 bits (1355),  Expect = 3e-101, Method: Compositional matrix adjust.
 Identities = 201/337 (60%), Positives = 280/337 (84%), Gaps = 4/337 (1%)

Query  1    MKILVTGAAGFIGAAVSQYLINQGDEVVGIDNINDYYDTALKYARLDSINNSEVADNFTF  60
            MKIL+TG+AGFIG+ +++ LI+QG+ V+G+D+INDYY  +LK  RL SI +    +NFTF
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK----ENFTF  56

Query  61   IKMGVEERDKMAALFEEHKFDRVVHLAAQAGVRYSLENPNAYVDSNIVGFVNILEGCRHN  120
             K+ +E+ D ++ +F +++ + VV+LAAQAGVRYS+ENP +Y+DSNIVGF+NILE  RH 
Sbjct  57   NKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHF  116

Query  121  KVEHLVYASSSSVYGANETMPFSEQHNVDHQVSLYAASKKANELMAHTYSHLYNLPTTGL  180
            ++++L+YASSSSVYGAN + PFS  +N+DH +SLYAA+KK+NELMAHTYSHLYNLPTTGL
Sbjct  117  NIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGL  176

Query  181  RFFTVYGPWGRPDMALFKFTKAILEGKTIQVYNYGNHRRDFTYIDDIVQGVIRSLDNVAK  240
            RFFTVYGPWGRPDMALFKFTKAI+++++I+VYN GN  RDFTY+DDIV+++ R + + A 
Sbjct  177  RFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPAS  236

Query  241  PNENWDGSNPDPSTSKAPYKVYNIGAQTPVHLLKFIETLESALGIEAKKKLLPMQPGDVP  300
            PN +W G++PDP++S APYKVYNIG ++PV+L+ F+E++E+ LG EA+K+ + +QPGDVP
Sbjct  237  PNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVP  296

Query  301  DTYADVSSLVADTGYQPSTDVETGVKAFVDWYRNFYK  337
            +TYA+V  L  D +++P T ++ GV+ FVDWY ++YK
Sbjct  297  ETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

71) CJA_3427 in NC_010995


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  361 bits (1355),  Expect = 3e-101, Method: Compositional matrix adjust.
 Identities = 197/334 (59%), Positives = 273/334 (82%), Gaps = 1/334 (0%)

Query  1    MKVLVTGTAGFIGSTLAKRLLARGDEVIGIDNLNDYYDVQIKKDRLAHLTANSGFTDIRC  60
            MK+L+TGTAGFIGS LAK+L+ +G+ VIG+D++NDYY V +K DRL  + ++  FT  + 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  61   NLEDKAAIDNVFKTHKPDRVVNLAAQAGVRYSLVNPQAYIDANITGFLNILEGCRHFGTD  120
            +LE+   + +VF  ++P+ VVNLAAQAGVRYS+ NP++YID+NI GF+NILE  RHF  +
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  NLVYASSSSVYGLNTAMPFSVHNNVDHPVSLYATSKKANELMAHTYSHLFNIPTTGLRFF  180
            NL+YASSSSVYG NT+ PFS  +N+DHP+SLYA++KK+NELMAHTYSHL+N+PTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFIFTRKILAGEPIDVFNYGHHRRDFTYIDDIVEGVIRTLDNVAQPNS  240
            TVYGPWGRPDMALF FT+ I+ +++IDV+N G+  RDFTY+DDIVE++ R + + A PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  NWSGDKPDPATSKGPYRIYNIGSNNPVELLRYIEVLEDCLGKKATKNLLPMQPGDVPDTY  300
            +WSG  PDP++S +PY++YNIG+N+PV L+ ++E +E+ LGK A KN + +QPGDVP+TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ANVDALIEDVGYRPTTPVEVGIERFVKWYRDYYK  334
            ANVD L+ D++++P T ++ G+++FV WY +YYK
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

72) capI in NC_016112


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  360 bits (1354),  Expect = 4e-101, Method: Compositional matrix adjust.
 Identities = 207/334 (62%), Positives = 277/334 (83%), Gaps = 1/334 (0%)

Query  1    MKILVTGTAGFIGNHLALRLLERGDEVIGIDNLNDYYDVNLKKARLARILDHNRYTdira  60
            MKIL+TGTAGFIG+HLA +L+ +G+ VIG+D++NDYY V+LK  RL + ++ + +T  + 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRL-KSIGKENFTFNKV  59

Query  61   dladrdriEQVFKEHRPERVVNLAAQAGVRYSIENPHAYIDSNIVGFINILEGCRHYGVE  120
             L + D + +VF +++PE VVNLAAQAGVRYSIENP++YIDSNIVGF+NILE  RH+ ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGANESMPFSVHDNVDHPLSLYAASKKANELMAHTYSNLYNLPTTGLRFF  180
            +L+YASSSSVYGAN S PFS  DN+DHPLSLYAA+KK+NELMAHTYS+LYNLPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFLFTKAILSGEKIQVFNYGKHRRDFTYIDDIVEGVIRTLDNIAQPNP  240
            TVYGPWGRPDMALF FTKAI++++ I+V+N G+  RDFTY+DDIVE++ R + + A PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWTGAKPDPGTSRAPWRVYNIGNQNPVELMKYIEVLEQCLGKTAEKELLPLQPGDVPDTY  300
            +W+GA PDPG+S AP +VYNIGN++PV LM ++E +E+ LGK A K+ + LQPGDVP+TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADVEALVQDVGYKPGTPIEVGIARFVEWYGSYYN  334
            A+V+ L +D+++KP T I+ G+ +FV+WY  YY+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

73) REMIM1_CH00771 in NC_021905


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  360 bits (1354),  Expect = 4e-101, Method: Compositional matrix adjust.
 Identities = 201/334 (61%), Positives = 268/334 (81%), Gaps = 1/334 (0%)

Query  1    MRVLVTGSAGFIGSALVLRLLERGDSVVGIDNHNDYYDPAIKEARLARHANHPNYVHMRV  60
            M++L+TG+AGFIGS L  +L+ +G+ V+G+D+ NDYY  ++KE RL +     N+   +V
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRL-KSIGKENFTFNKV  59

Query  61   DLADGKAIDEAFRTHRPQRVVNLAAQAGVRYSIENPLAYINSNIVGFVNILEGCRHHGVE  120
             L +   +   F  ++P+ VVNLAAQAGVRYSIENP +YI+SNIVGF+NILE  RH  ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGANTTMPFSVHHNVDHPLSLYAASKKSNELMAHTYSHLYGMPTTGLRFF  180
            +L+YASSSSVYGANT+ PFS  +N+DHPLSLYAA+KKSNELMAHTYSHLY +PTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTKAILAGERLPVFNYGKHRRDFTYIDDIVEGVIRVLDRPAPPNS  240
            TVYGPWGRPDMALFKFTKAI+ ++ + V+N G+  RDFTY+DDIVE++ R++ +PA+PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  EWSGAHPDPGSSMAPWRVYNIGSNRPVELMDYIAAIEKVLGKKAGIDMLPLQPGDVPDTY  300
            EWSGA+PDPGSS AP +VYNIG+N PV LM+++ AIE+ LGK A  + + LQPGDVP+TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADVADLIEEFNFQPITRVEQGVASFVAWYTEYFR  334
            A+V DL+ +++F+P T +++GV  FV WY EY++
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

74) SbBS512_E1204 in NC_010658


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  360 bits (1354),  Expect = 4e-101, Method: Compositional matrix adjust.
 Identities = 199/333 (60%), Positives = 271/333 (82%), Gaps = 0/333 (0%)

Query  1    MKFLVTGAAGFIGFYVSKRLLAAGHQVVGIDNLNDYYDVNLKQARLDLLKHDNFSFYKID  60
            MK+L+TG+AGFIG  ++K+L+  GH V+G+D++NDYY V+LK+ RL  +  +NF+F K+ 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  61   LADREKMAALFADERFDRVINLAAQAGVRYSLENPNAYADANLIGFLNILEGCRHNNVQH  120
            L + + ++ +F DE+ + V+NLAAQAGVRYS+ENP +Y D+N++GF+NILE  RH N+Q+
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  121  LLYASSSSVYGMNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPTTGLRFFT  180
            L+YASSSSVYG N   PFST D++DHP+SLYAATKK+NELMAHTYSHLY LPTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  181  VYGPWGRPDMALFKFTKAMLEGKSIDVYNFGKMKRDFTYIDDIAEAIIRLQDVIPEKDPQ  240
            VYGPWGRPDMALFKFTKA++++++IDVYN G+M RDFTY+DDI EAI RL    +  + +
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  241  WTVETGSPATSSAPYRVYNIGNSSPVELMDYINALEEALGIEANKNMMPLQPGDVLETSA  300
            W+     P++S APY+VYNIGN+SPV LM++++A+E+ LG EA KN M LQPGDV ET A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  301  DTKALYDVIGFKPETSVKEGVKNFVEWYRNFYK  333
            +   L+  I+FKPET++++GV++FV+WY ++YK
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

75) ENC_41400 in NC_021046


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  360 bits (1354),  Expect = 4e-101, Method: Compositional matrix adjust.
 Identities = 195/333 (59%), Positives = 275/333 (83%), Gaps = 0/333 (0%)

Query  1    MKFLVTGAAGFIGSHVSKRLLDAGHEVVGIDNLNDYYDPNLKLARLELLKSESFTFHKLD  60
            MK+L+TG+AGFIGSH++K+L+  GH V+G+D++NDYY  +LK  RL  +  E+FTF+K+ 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  61   LADREGMAALFANEKFNRVIHLAAQAGVRYSLENPHAYADANLVGHLNVLEGCRHNKVQH  120
            L + ++++ +F +E+ + V++LAAQAGVRYS+ENP++Y D+N+VG +N+LE  RH ++Q+
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  121  LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMSHTYSHLYNLPTTGLRFFT  180
            L+YASSSSVYG N   PFST D++DHP+SLYAATKK+NELM+HTYSHLYNLPTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  181  VYGPWGRPDMALFKFTKAMIEGNSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPQADTD  240
            VYGPWGRPDMALFKFTKA++++++IDVYN G+M RDFTY+DDI EAI RL    + ++ +
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  241  WTVETGSPATSSAPYRVYNIGNSSPVELMDYITALEEALGKEAVKNMMPIQPGDVLETSA  300
            W+     P++S APY+VYNIGN+SPV LM+++ A+E+ LGKEA KN M +QPGDV ET A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  301  DTKALYDVIGFKPQTSVKEGVKNFVNWYRNFYN  333
            +   L+  I+FKP+T++++GV++FV+WY ++Y+
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

76) ES15_1762 in NC_017933


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  360 bits (1354),  Expect = 4e-101, Method: Compositional matrix adjust.
 Identities = 192/334 (58%), Positives = 272/334 (82%), Gaps = 1/334 (0%)

Query  1    MKFLVTGAAGFIGFHVSERLLAAGHQVIGIDNLNDYYDVNLKLARLNLLKQHTAFYFEKI  60
            MK+L+TG+AGFIG H++ +L+  GH VIG+D++NDYY V+LK  RL+ + ++  F F+K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKEN-FTFNKV  59

Query  61   DLADRQAMETLFAQHQPQRVIHLAAQAGVRYSLENPHAYADANLTGHLNVLEGCRHHKVE  120
             L + + +  +F ++QP+ V++LAAQAGVRYS+ENP++Y D+N+ G +N+LE  RH +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMSHTYSHLYGLPTTGLRFF  180
            +L+YASSSSVYG N   PFST D++DHP+SLYAATKK+NELM+HTYSHLY LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTQAIVKGSSIDVYNHGQMRRDFTYIDDIAEAIVRLQDVIPQADP  240
            TVYGPWGRPDMALFKFT+AIV++ +IDVYNHG+M RDFTY+DDI EAI RL    + ++ 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  QWTVENGSPATSSAPYRVYNIGNSSPVALMDYISALEKALGKEAQKNMLPMQPGDVLETS  300
            +W+  +  P++S APY+VYNIGN+SPV LM+++ A+E+ LGKEA+KN + +QPGDV ET 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTSALYKVIGFKPQTSVEEGVKRFVTWYKAFYN  334
            A+   L++ I+FKP+T++++GV++FV WY  +Y+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

77) Shewmr4_3886 in NC_008321


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  360 bits (1354),  Expect = 4e-101, Method: Compositional matrix adjust.
 Identities = 191/335 (58%), Positives = 268/335 (80%), Gaps = 1/335 (0%)

Query  1    MKYLVTGAAGFIGAKVSERLCAQGHEVVGIDNLNDYYDVGLKLARLAPLEALSNFRFIKL  60
            MK L+TG+AGFIG+ ++ +L  QGH V+G+D++NDYY V+LK  RL ++    NF F K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DLADRDGIAALFAEQGFQRVIHLAAQAGVRYSLDNPLAYADSNLVGHLTILEGCRHHKIE  120
             L + D+++ +F ++  + V++LAAQAGVRYS++NP +Y DSN+VG + ILE  RH +I+
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGLNQKMPFSTEDSVDHPISLYAATKKANELMSHTYSHLYQLPTTGLRFF  180
            +L+YASSSSVYG N   PFST D++DHP+SLYAATKK+NELM+HTYSHLY+LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTKAILAGDTIDVYNHGDLSRDFTYIDDIVEGIIRVQDKPPRPTP  240
            TVYGPWGRPDMALFKFTKAI+ +++IDVYNHG++ RDFTY+DDIVE+I R+  KP+ P  
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWRVETGTPANSSAPYRVFNIGNGSPVQLLDFITALESALGIEAKKQFLPMQPGDVHSTW  300
            +W      P++S APY+V+NIGN SPV+L++F+ A+E+ LG EA+K+++ +QPGDV  T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTEDLFKAVGYKPQVDINTGVSRFVEWYRAFYAK  335
            A+ +DLF+ +++KP+  I+ GV++FV+WY  +Y K
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

78) DND132_2271 in NC_016803


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  360 bits (1353),  Expect = 5e-101, Method: Compositional matrix adjust.
 Identities = 203/335 (61%), Positives = 272/335 (82%), Gaps = 1/335 (0%)

Query  1    MKILVTGAAGFIGFHLSKRLTDAGHEVIGLDNLNDYYDVNLKKDRLKILEQSPLFRHVNI  60
            MKIL+TG+AGFIG HL+K+L   GH VIG+D++NDYY V+LK DRLK + +   F   ++
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKEN-FTFNKV  59

Query  61   NLEDAQPMSELFQAERFTHVVNLAAQAGVRYSIENPRSYIDSNVVGFLNILEGCRHNKVE  120
            +LE+ + +S +F  E+   VVNLAAQAGVRYSIENPR+YIDSN+VGF+NILE  RH +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGMNTKMPLNPHEGVDHPMSLYAATKKSNEMMAHSYSSLYNLPTTGLRFF  180
            +L+YASSSSVYG NT  P++  + +DHP+SLYAATKKSNE+MAH+YS LYNLPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFLFTKNIIEDKPINVFNYGKMRRDFTYIDDIVEGVVRVMQRTATPNP  240
            TVYGPWGRPDMALF FTK I++D++I+V+N G+M RDFTY+DDIVE++ R++++ A+PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWDGDHPDPCTSSVPYQIYNIGNNTVVELSRYIEVIEEVVGKKAIYNYMPMQAGDVPATE  300
            +W G +PDP +S  PY++YNIGNN+ V L  ++E IE+ +GK A  NYM +Q+GDVP T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADVSDLQADVGFKPDTTIEEGIRKFIEWYHEYYGK  335
            A+V DL  D++FKP+TTI++G+ KF++WY EYY K
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

79) AMBAS45_13595 in NC_018679


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  360 bits (1353),  Expect = 5e-101, Method: Compositional matrix adjust.
 Identities = 199/337 (60%), Positives = 279/337 (83%), Gaps = 4/337 (1%)

Query  1    MKILVTGAAGFIGAAVSQYLINRGDQVVGIDNINDYYDVNLKHARLDEIKSSTAADLFSF  60
            MKIL+TG+AGFIG+ +++ LI++G+ V+G+D+INDYY V+LK+ RL  I    + + F+F
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI----GKENFTF  56

Query  61   IEMGVEERDKMAALFEEHKFDRVVHLAAQAGVRYSLENPNAYVDSNIVGFVNILEGCRHN  120
              + +E+ D ++ +F +++ + VV+LAAQAGVRYS+ENP +Y+DSNIVGF+NILE  RH 
Sbjct  57   NKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHF  116

Query  121  NVEHLVYASSSSVYGANETMPFSEQHNVDHQVSLYAASKKANELMAHTYSHLYNLPTTGL  180
            N+++L+YASSSSVYGAN + PFS  +N+DH +SLYAA+KK+NELMAHTYSHLYNLPTTGL
Sbjct  117  NIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGL  176

Query  181  RFFTVYGPWGRPDMALFKFTKAILEGKTIQVYNFGNHRRDFTYIDDIVEGVIRSLDNVAK  240
            RFFTVYGPWGRPDMALFKFTKAI+++++I+VYN GN  RDFTY+DDIVE++ R + + A 
Sbjct  177  RFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPAS  236

Query  241  PNENWDGSNPDPSTSKAPYKVYNIGAQTPVHLLKFIETLESALGIEAKKELLPMQPGDVP  300
            PN +W G++PDP++S APYKVYNIG ++PV+L+ F+E++E+ LG EA+K+ + +QPGDVP
Sbjct  237  PNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVP  296

Query  301  DTYADVSSLVEDTGYQPSTDVETGVKAFVDWYRDFYK  337
            +TYA+V  L  D +++P T ++ GV+ FVDWY ++YK
Sbjct  297  ETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

80) KPHS_35510 in NC_016845


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  360 bits (1353),  Expect = 5e-101, Method: Compositional matrix adjust.
 Identities = 192/333 (58%), Positives = 277/333 (84%), Gaps = 0/333 (0%)

Query  1    MKFLVTGAAGFIGFHIAQRLLNEGHDVVGIDNMNDYYDVSLKQARLDRLASPAFHFQQLD  60
            MK+L+TG+AGFIG H+A++L+++GH V+G+D++NDYY VSLK+ RL  ++   F F+++ 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  61   LADREGMAKLFATEQFDRVIHLAAQAGVRYSLENPYAYADANLMGYLNILEGCRHTKVKH  120
            L + ++++K+F  EQ + V++LAAQAGVRYS+ENP +Y D+N++G++NILE  RH ++++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  121  LVYASSSSVYGLNRKMPFSTEDSVDHPVSLYAATKKANELMAHTYSHLYGIPTTGLRFFT  180
            L+YASSSSVYG N   PFST D++DHP+SLYAATKK+NELMAHTYSHLY +PTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  181  VYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIVEAVVRVQDVIPQANAD  240
            VYGPWGRPDMALFKFTKA++++++IDVYN G+M RDFTY+DDIVEA+ R+    + +N +
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  241  WTVESGSPATSSAPYRVYNIGNSSPVELMDYITALEEALGMEAKKNMMPIQPGDVLDTSA  300
            W+     P++S APY+VYNIGN+SPV LM+++ A+E+ LG EA+KN M +QPGDV +T A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  301  DTQALYDLVGFKPQTSVKDGVKNFVEWYKDYYQ  333
            + + L+  ++FKP+T+++DGV++FV+WY +YY+
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

81) M495_13565 in NC_021741


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  360 bits (1353),  Expect = 5e-101, Method: Compositional matrix adjust.
 Identities = 192/334 (58%), Positives = 272/334 (82%), Gaps = 1/334 (0%)

Query  1    MKFLVTGAAGFIGFHVADRLLAAGHQVVGIDNLNDYYDVGLKLARLELLADKPAFQFIKL  60
            MK+L+TG+AGFIG H+A +L+  GH V+G+D++NDYY V+LK  RL  ++ K  F F K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG-KENFTFNKV  59

Query  61   DLADREGMAQLFTEHQFQRVIHLGAQAGVRYSLENPLAYADANLIGHLNVLEGCRHNKVE  120
             L + ++++++F ++Q + V++L+AQAGVRYS+ENP +Y D+N++G +N+LE  RH +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLLYASSSSVYGLNRKLPFATEDSVDHPVSLYAATKKANELMSHSYSHLYGLPTTGLRFF  180
            +L+YASSSSVYG N   PF+T D++DHP+SLYAATKK+NELM+H+YSHLY LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTKAILAGDSIDVYNHGEMHRDFTYIDDIAESIVRLQAVIPQPNA  240
            TVYGPWGRPDMALFKFTKAI+ +++IDVYNHG+M RDFTY+DDI E+I RL    + PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWTVEQGSPATSSAPYHVYNIGNSSPVKLMKYISALEQALGIEARKNMLPMQPGDVLDTS  300
            +W+  +  P++S APY VYNIGN+SPV+LM ++ A+E+ LG EARKN + +QPGDV +T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTAELYRVIGFKPETSVEEGVKRFVEWYKSFYK  334
            A+  +L+R I+FKPET++++GV++FV+WY  +YK
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

82) Pjdr2_0360 in NC_012914


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  360 bits (1352),  Expect = 6e-101, Method: Compositional matrix adjust.
 Identities = 197/333 (60%), Positives = 267/333 (81%), Gaps = 1/333 (0%)

Query  1    MTILVTGAAGFIGFHLSARLLKEGKRVVGLDNFNDYYDVQLKRDRWSQLVASPSFKGAEQ  60
            M IL+TG+AGFIG HL+ +L+K+G  V+G+D++NDYY V LK DR    ++  +F     
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKS-IGKENFTFNKV  59

Query  61   DLADYEGLLALIREEGVTTIVHLAAQAGVRYSLTNPFAYLETNLQGFGHVLEASRQAGIK  120
             L +Y++L  ++ +E    +V+LAAQAGVRYS+ NP +Y+++N+ GF ++LE SR+  I+
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGANVSMPFSVSDNVDHPVSLYAATKKSNELMAHAYSHLYNLPTTGLRFF  180
            +L+YASSSSVYGAN S PFS SDN+DHP+SLYAATKKSNELMAH+YSHLYNLPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMAYFSFTQKIMAGEPIQVFNEGKMQRDFTYIDDIVEGIYRLLDQAPQPNA  240
            TVYGPWGRPDMA F FT+ I+ +++I+V+N+G+M RDFTY+DDIVE+I RL+ +++ PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  EWDRVDPDPGTSYAPYKVYNIGNNKPVELMAFINTIEDKLGRKAVMEFKPMQPGDVTATY  300
            EW   DPDPG+SYAPYKVYNIGNN PV LM F+++IE+KLG+ A  ++  +QPGDV  TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADIDGLMADVDFRPETTIEEGIGRFAEWYKSYY  333
            A++D+L  D+DF+PETTI++G+ +F +WY  YY
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

83) M5M_08920 in NC_018868


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  360 bits (1352),  Expect = 6e-101, Method: Compositional matrix adjust.
 Identities = 197/334 (59%), Positives = 272/334 (82%), Gaps = 1/334 (0%)

Query  1    MKVMVTGAAGFIGSTLSHRLLARGDEVIGVDNLNDYYDVTLKHARLDRLTSQPGFQFAKL  60
            MK+++TG+AGFIGS L+ +L+ +G+ VIGVD++NDYY V+LK+ RL  +  +  F F K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKV  59

Query  61   AIEDKAAVDKVYREHKPDRVVNLAAQAGVRYSLENPQAYIDANITGFLNILEACRHQGTD  120
             +E+   + KV+ +++P+ VVNLAAQAGVRYS+ENP++YID+NI GF+NILE  RH   +
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGANTAMPFSVHNNVDHPVSLYAASKKANELMAHTYSHLFNIPTTGLRFF  180
            +L+YASSSSVYGANT+ PFS  +N+DHP+SLYAA+KK+NELMAHTYSHL+N+PTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFIFTRKILAGEPIDVFNYGKHQRDFTYIDDIVEGVVRTLDHIAPANS  240
            TVYGPWGRPDMALF FT+ I+ +++IDV+N G+  RDFTY+DDIVE++ R +   A++N 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  NWSGDSPDPATSKAPYRLYNIGSNNPVELLRYIEILENCLGKKAQMNLLPLQAGDVPATY  300
            +WSG  PDP++S APY++YNIG+N+PV L+ ++E +EN LGK A+ N + LQ+GDVP TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADVDALIDDVDYKPTTPIEVGIEHFVKWYRDYYK  334
            A+VD L+ D+D+KP T I+ G++ FV WY +YYK
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

84) KPK_1672 in NC_011283


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  360 bits (1352),  Expect = 6e-101, Method: Compositional matrix adjust.
 Identities = 191/333 (58%), Positives = 278/333 (84%), Gaps = 0/333 (0%)

Query  1    MKFLVTGAAGFIGFHIAQRLLNEGHDVVGIDNMNDYYDVSLKQARLDRLASPAFHFQQLD  60
            MK+L+TG+AGFIG H+A++L+++GH V+G+D++NDYY VSLK+ RL  ++   F F+++ 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  61   LADREGMAKLFAAEQFDRVIHLAAQAGVRYSLENPYAYADANLMGYLNILEGCRHTKVKH  120
            L + ++++K+F  EQ + V++LAAQAGVRYS+ENP +Y D+N++G++NILE  RH ++++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  121  LVYASSSSVYGLNRKMPFSTEDSVDHPVSLYAATKKANELMAHTYSHLYSIPTTGLRFFT  180
            L+YASSSSVYG N   PFST D++DHP+SLYAATKK+NELMAHTYSHLY++PTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  181  VYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIVEAVVRVQDVIPQANAD  240
            VYGPWGRPDMALFKFTKA++++++IDVYN G+M RDFTY+DDIVEA+ R+    + +N +
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  241  WTVESGSPATSSAPYRVYNIGNSSPVELMDYITALEEALGMEAKKNMMPIQPGDVLDTSA  300
            W+     P++S APY+VYNIGN+SPV LM+++ A+E+ LG EA+KN M +QPGDV +T A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  301  DTQPLYDLVGFKPQTSVKEGVKNFVEWYKDYYQ  333
            + + L+  ++FKP+T++++GV++FV+WY +YY+
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

85) Entcl_1666 in NC_014618


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  360 bits (1351),  Expect = 7e-101, Method: Compositional matrix adjust.
 Identities = 201/334 (61%), Positives = 270/334 (81%), Gaps = 0/334 (0%)

Query  1    MKFLVTGAAGFIGYHVCDRLLKAGHQVVGIDNLNDYYDVSLKQARLDLLSSPDFTFHKID  60
            MK+L+TG+AGFIG H+  +L+K GH V+G+D++NDYY VSLK+ RL  ++  +FTF+K+ 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  61   LADRVAMPALFAEEKFDRVIHLAAQAGVRYSLENPHVYADANLIGHLNVLEGCRHNKVQH  120
            L +   ++ +F +E+ + V++LAAQAGVRYS+ENP+ Y D+N++G +N+LE  RH ++Q+
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  121  LLYASSSSVYGLNRKMPFSTDDPVDHPVSLYAATKKANELMAHTYSHLYNLPTTGLRFFT  180
            L+YASSSSVYG N   PFST D +DHP+SLYAATKK+NELMAHTYSHLYNLPTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  181  VYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYVDDIVEAIIRMQDVIPQPNPE  240
            VYGPWGRPDMALFKFTKA++++++IDVYN G+M RDFTYVDDIVEAI R+    + PN E
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  241  WTVETGSPATSSAPYHVYNIGNSAPVELMDYITALEEALGIEAKKNMMPLQAGDVLETSA  300
            W+     P++S APY VYNIGN++PV LM+++ A+E+ LG EA+KN M LQ+GDV ET A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  301  DTKPLFEVCGFKPQTSVKDGVKNFVDWYRGYYNK  334
            +   LF   +FKP+T+++DGV++FVDWY  YY+K
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

86) amad1_13975 in NC_019393


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  360 bits (1351),  Expect = 7e-101, Method: Compositional matrix adjust.
 Identities = 196/337 (59%), Positives = 279/337 (83%), Gaps = 4/337 (1%)

Query  1    MKILVTGAAGFIGAAVSQYLINRGDQVVGIDNINDYYDVNLKHARLDEIKSSSAADLFSF  60
            MKIL+TG+AGFIG+ +++ LI++G+ V+G+D+INDYY V+LK+ RL  I    + + F+F
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI----GKENFTF  56

Query  61   TEMGVEEREKMAALFEEHKFDRVVHLAAQAGVRYSLENPNAYVDSNIVGFVNILEGCRHN  120
              + +E+ + ++ +F +++ + VV+LAAQAGVRYS+ENP +Y+DSNIVGF+NILE  RH 
Sbjct  57   NKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHF  116

Query  121  KVEHLVYASSSSVYGANETMPFSEQHNVDHQVSLYAASKKANELMAHTYSHLYNLPTTGL  180
            ++++L+YASSSSVYGAN + PFS  +N+DH +SLYAA+KK+NELMAHTYSHLYNLPTTGL
Sbjct  117  NIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGL  176

Query  181  RFFTVYGPWGRPDMALFKFTKAILEGKTIQVYNYGNHRRDFTYIDDIVQGVIRSLDNVAK  240
            RFFTVYGPWGRPDMALFKFTKAI+++++I+VYN GN  RDFTY+DDIV+++ R + + A 
Sbjct  177  RFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPAS  236

Query  241  PNENWDGSNPDPSTSKAPYKVYNIGAQTPVHLLKFIETLESALGIEAKKELLPMQPGDVP  300
            PN +W G++PDP++S APYKVYNIG ++PV+L+ F+E++E+ LG EA+K+ + +QPGDVP
Sbjct  237  PNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVP  296

Query  301  DTYADVSSLVADTGYQPSTDVETGVKAFVDWYRNFYK  337
            +TYA+V  L  D +++P T ++ GV+ FVDWY ++YK
Sbjct  297  ETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

87) I636_13580 in NC_021714


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  360 bits (1351),  Expect = 7e-101, Method: Compositional matrix adjust.
 Identities = 196/337 (59%), Positives = 279/337 (83%), Gaps = 4/337 (1%)

Query  1    MKILVTGAAGFIGAAVSQYLINRGDQVVGIDNINDYYDVNLKHARLDEIKSSSAADLFSF  60
            MKIL+TG+AGFIG+ +++ LI++G+ V+G+D+INDYY V+LK+ RL  I    + + F+F
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI----GKENFTF  56

Query  61   TEMGVEEREKMAALFEEHKFDRVVHLAAQAGVRYSLENPNAYVDSNIVGFVNILEGCRHN  120
              + +E+ + ++ +F +++ + VV+LAAQAGVRYS+ENP +Y+DSNIVGF+NILE  RH 
Sbjct  57   NKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHF  116

Query  121  KVEHLVYASSSSVYGANETMPFSEQHNVDHQVSLYAASKKANELMAHTYSHLYNLPTTGL  180
            ++++L+YASSSSVYGAN + PFS  +N+DH +SLYAA+KK+NELMAHTYSHLYNLPTTGL
Sbjct  117  NIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGL  176

Query  181  RFFTVYGPWGRPDMALFKFTKAILEGKTIQVYNYGNHRRDFTYIDDIVQGVIRSLDNVAK  240
            RFFTVYGPWGRPDMALFKFTKAI+++++I+VYN GN  RDFTY+DDIV+++ R + + A 
Sbjct  177  RFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPAS  236

Query  241  PNENWDGSNPDPSTSKAPYKVYNIGAQTPVHLLKFIETLESALGIEAKKELLPMQPGDVP  300
            PN +W G++PDP++S APYKVYNIG ++PV+L+ F+E++E+ LG EA+K+ + +QPGDVP
Sbjct  237  PNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVP  296

Query  301  DTYADVSSLVADTGYQPSTDVETGVKAFVDWYRNFYK  337
            +TYA+V  L  D +++P T ++ GV+ FVDWY ++YK
Sbjct  297  ETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

88) I635_13950 in NC_021713


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  360 bits (1351),  Expect = 7e-101, Method: Compositional matrix adjust.
 Identities = 196/337 (59%), Positives = 279/337 (83%), Gaps = 4/337 (1%)

Query  1    MKILVTGAAGFIGAAVSQYLINRGDQVVGIDNINDYYDVNLKHARLDEIKSSSAADLFSF  60
            MKIL+TG+AGFIG+ +++ LI++G+ V+G+D+INDYY V+LK+ RL  I    + + F+F
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI----GKENFTF  56

Query  61   TEMGVEEREKMAALFEEHKFDRVVHLAAQAGVRYSLENPNAYVDSNIVGFVNILEGCRHN  120
              + +E+ + ++ +F +++ + VV+LAAQAGVRYS+ENP +Y+DSNIVGF+NILE  RH 
Sbjct  57   NKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHF  116

Query  121  KVEHLVYASSSSVYGANETMPFSEQHNVDHQVSLYAASKKANELMAHTYSHLYNLPTTGL  180
            ++++L+YASSSSVYGAN + PFS  +N+DH +SLYAA+KK+NELMAHTYSHLYNLPTTGL
Sbjct  117  NIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGL  176

Query  181  RFFTVYGPWGRPDMALFKFTKAILEGKTIQVYNYGNHRRDFTYIDDIVQGVIRSLDNVAK  240
            RFFTVYGPWGRPDMALFKFTKAI+++++I+VYN GN  RDFTY+DDIV+++ R + + A 
Sbjct  177  RFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPAS  236

Query  241  PNENWDGSNPDPSTSKAPYKVYNIGAQTPVHLLKFIETLESALGIEAKKELLPMQPGDVP  300
            PN +W G++PDP++S APYKVYNIG ++PV+L+ F+E++E+ LG EA+K+ + +QPGDVP
Sbjct  237  PNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVP  296

Query  301  DTYADVSSLVADTGYQPSTDVETGVKAFVDWYRNFYK  337
            +TYA+V  L  D +++P T ++ GV+ FVDWY ++YK
Sbjct  297  ETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

89) CFF8240_1396 in NC_008599


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  360 bits (1351),  Expect = 7e-101, Method: Compositional matrix adjust.
 Identities = 202/349 (58%), Positives = 272/349 (78%), Gaps = 16/349 (4%)

Query  1    MKILVTGTAGFIGFHLSRELAKRGDEVVGFDCINDYYDINLKYARLNELGIKRENIEENI  60
            MKIL+TGTAGFIG HL++ L K+G+ V+G D INDYY ++LK  RL+ +G          
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE--------  52

Query  61   AVRSSIYPNLSFIKADLSDLKTMQKLFENGSFDCIVNLAAQAGVRYSLINPHAYINSNIL  120
                    N++F K  L +   + K+F +   + +VNLAAQAGVRYS+ NP++YI+SNI+
Sbjct  53   --------NFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIV  104

Query  121  GFTNILECCRNYGVKNLVYASSSSVYGLNEKMPFSTHESVNHPISLYAASKKSNELMAHT  180
            GF NILEC R++ ++NL+YASSSSVYG N   PFST ++++HP+SLYAA+KKSNELMAHT
Sbjct  105  GFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHT  164

Query  181  YSHLFGLSTTGLRFFTVYGEWGRPDMALFLFTKAALEGKAIDVYNYGKMKRDFTYVADIV  240
            YSHL+ L+TTGLRFFTVYG WGRPDMALF FTKA ++++AIDVYN G+M RDFTYV DIV
Sbjct  165  YSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIV  224

Query  241  KGVMKCVDNPAIANLAWDASHPDPATSNAPYKIYNIGNNSPVELMDYIKAIEIKLGREIK  300
             ++ + V +PA +N  W +++PDP++S APYK+YNIGNNSPV LM+++ AIE KLG+E +
Sbjct  225  EAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEAR  284

Query  301  KNLMPLQAGDVPSTYADVSDLVEDFNYKPNTSVNDGVARFVQWYMDYYK  349
            KN M LQ+GDVP TYA+V DL  D+++KP+T+++DGV +FV+WY++YYK
Sbjct  285  KNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

90) Daes_3345 in NC_014844


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  359 bits (1347),  Expect = 1e-100, Method: Compositional matrix adjust.
 Identities = 205/335 (62%), Positives = 266/335 (80%), Gaps = 1/335 (0%)

Query  1    MKILVTGAAGFIGFHLSRALIAQGHEVVGLDNLNDYYDVNLKKARLAILGESPLFKHVNI  60
            MKIL+TG+AGFIG HL++ LI QGH V+G+D++NDYY V+LK  RL  +G    F   ++
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKEN-FTFNKV  59

Query  61   SLEHDQPMSELFRAERFTHVVNLAAQAGVRYSIENPKSYIDSNVVGFLNILEGCRHNGVE  120
             LE+ + +S +F  E+   VVNLAAQAGVRYSIENP++YIDSN+VGF+NILE  RH  ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGMNTRMPLSPHEGVDHPMSLYAATKKANEMMAHSYSSLYALPTTGLRFF  180
            +L+YASSSSVYG NT  P+S  + +DHP+SLYAATKK+NE+MAH+YS LY LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFLFTKNILEDKPINVFNYGKMRRDFTYIDDIVEGVVRVVKKTAAPNP  240
            TVYGPWGRPDMALF FTK I++D++I+V+N G+M RDFTY+DDIVE++ R+VKK A+PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWDGDKPDPCSSTVPFRVYNIGNNQVVELSRYIEVIEEVVGKKAIYNYLPMQPGDVPATE  300
            +W G  PDP SS  P++VYNIGNN  V L  ++E IE+ +GK A  NY+ +QPGDVP T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADVSDLVRDVDFKPNTTIEVGIRNFIDWYRDYYGK  335
            A+V DL RD+DFKP+TTI+ G+ +F+DWY +YY K
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

91) TOL_1903 in NC_020888


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  359 bits (1348),  Expect = 1e-100, Method: Compositional matrix adjust.
 Identities = 204/334 (62%), Positives = 273/334 (82%), Gaps = 1/334 (0%)

Query  1    MKILVTGAAGFIGAFTSQRFIEQGHEVVGIDNLNDYYDVNLKYGRLAWLNALPQFEFKQV  60
            MKIL+TG+AGFIG+  ++++I QGH V+G+D++NDYY V+LK +RL  +    +F F++V
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   ELGDTQAVNAVFAEHQFDRVVHLAAQAGVRYSITNPHAYVESNLVGFVNILEACRHNNIE  120
             L + + ++ VF ++Q + VV+LAAQAGVRYSI NP++Y++SN+VGF+NILE  RH NI+
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGLNTDIPYSTSDRVDHPVSLYAATKKSNELMAHTYSHLYGLPTTGLRFF  180
            +L+YASSSSVYG NT  P+STSD +DHP+SLYAATKKSNELMAHTYSHLY LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMAYFSFTKAILEGKTIDVYNHGKMQRDFTYIDDIVEGVTRIANKIPTGVE  240
            TVYGPWGRPDMA F FTKAI+++++IDVYNHG+M RDFTY+DDIVE+++R+ +K ++   
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  GWSPESGDTSRSSAPYKIYNIGNHNTVELGTFIETIEKVLGKTADKRYLDMQPGDVLATY  300
             WS    D + S APYK+YNIGN++ V L  F+E+IE+ LGK A K Y+D+QPGDV  TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ANVDDLIADVDFAPNTSLEVGLEKFVRWYHEFYK  334
            ANVDDL+ D+DF P+T+++ G++KFV WY E+YK
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

92) Noc_2638 in NC_007484


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  359 bits (1347),  Expect = 1e-100, Method: Compositional matrix adjust.
 Identities = 199/334 (60%), Positives = 272/334 (82%), Gaps = 1/334 (0%)

Query  1    MKIMVTGSAGFIGAALTEKLLKRGDEVIGVDNLNDYYDVNLKRARLARFQTNPAFTEVPI  60
            MKI++TG+AGFIG+ L+ KL+K+G+ VIGVD++NDYY V+LK  RL  +  +  FT   +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  61   GLENREALRAIFAKYRPQRVVNLAAQAGVRYSLENPYAYMDSNLYGFLNILENCRHYQVE  120
             LEN + L  +F   +P+ VVNLAAQAGVRYS+ENP +Y+DSN+ GF+NILE  RH++++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVFASSSSVYGANTKMPYAVQDNVDHPLSLYAASKKANELMAHTYSHLYRLPTTGLRFF  180
            +L++ASSSSVYGANT  P++  DN+DHPLSLYAA+KK+NELMAHTYSHLY LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTRNILAGKPIEVYNYGHHQRDFTYIDDIVEGVTRTLDRLPAPNA  240
            TVYGPWGRPDMALFKFT+ I+ +++I+VYN G+  RDFTY+DDIVE+++R + + ++PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  NWNGATPEPNTSSAPYRIYNIGNHQPVELGKFIKILEECLGREAKKNLLPLQPGDVPATY  300
            +W+GA P+P +S APY++YNIGN+ PV L  F+  +E+ LG+EA+KN + LQPGDVP TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADVDDLIQDMEFYPATPIEEGIARFVAWYKNYHK  334
            A+VDDL++D++F P T I++G+ +FV WY +Y K
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

93) MASE_13060 in NC_018632


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  359 bits (1349),  Expect = 1e-100, Method: Compositional matrix adjust.
 Identities = 198/337 (59%), Positives = 278/337 (83%), Gaps = 4/337 (1%)

Query  1    MKILVTGAAGFIGAAVSQYLINRGDQVVGIDNINDYYEVKLKHARLDEIKSSTAADLFSF  60
            MKIL+TG+AGFIG+ +++ LI++G+ V+G+D+INDYY V LK+ RL  I    + + F+F
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI----GKENFTF  56

Query  61   IEMGVEERDKMAALFEEHKFDRVVHLAAQAGVRYSLENPNAYVDSNIVGFVNILEGCRHN  120
              + +E+ D ++ +F +++ + VV+LAAQAGVRYS+ENP +Y+DSNIVGF+NILE  RH 
Sbjct  57   NKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHF  116

Query  121  KVEHLVYASSSSVYGANETMPFSEQHNVDHQVSLYAASKKANELMAHTYSHLYNLPTTGL  180
            ++++L+YASSSSVYGAN + PFS  +N+DH +SLYAA+KK+NELMAHTYSHLYNLPTTGL
Sbjct  117  NIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGL  176

Query  181  RFFTVYGPWGRPDMALFKFTKAILEGKTIQVYNYGNHRRDFTYIDDIVEGVIRSLDNVAK  240
            RFFTVYGPWGRPDMALFKFTKAI+++++I+VYN GN  RDFTY+DDIVE++ R + + A 
Sbjct  177  RFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPAS  236

Query  241  PNENWDGGNPDPSTSKAPYKVYNIGAQTPVHLLKFIETLESALGIEAKKELLPMQPGDVP  300
            PN +W G++PDP++S APYKVYNIG ++PV+L+ F+E++E+ LG EA+K+ + +QPGDVP
Sbjct  237  PNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVP  296

Query  301  DTYADVSSLVEDTGYQPSTDVETGVKAFVDWYRDFYK  337
            +TYA+V  L  D +++P T ++ GV+ FVDWY ++YK
Sbjct  297  ETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

94) vfu_A00151 in NC_016602


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  359 bits (1347),  Expect = 1e-100, Method: Compositional matrix adjust.
 Identities = 196/333 (59%), Positives = 265/333 (80%), Gaps = 0/333 (0%)

Query  3    MKYLVTGAAGFIGSAVIERLCAEGHDVVGIDNLNDYYDVALKDARLERAAHERFSFIEMD  62
            MK L+TG+AGFIGS +  +L  +GH V+G+D++NDYY V+LK+ RL   + E F+F  + 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  63   IADREAIADLFAVEQFDKVIHLAAQAGVRYSIDNPMSYADSNLVGHLTILEGCRHHKIKH  122
            + + + ++ +F  EQ + V++LAAQAGVRYSI+NP +Y DSN+VG + ILE  RH +I++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  123  LVYASSSSVYGLNRKTPFNTSDSVDHPVSLYAATKKSNELMAHTYSHLYGVPTTGLRFFT  182
            L+YASSSSVYG N   PF+TSD++DHP+SLYAATKKSNELMAHTYSHLY +PTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  183  VYGPWGRPDMALFKFTKAILKGDAIDVYNNGDMMRDFTYIDDIVEGILRIKDVVPEPNAE  242
            VYGPWGRPDMALFKFTKAI++++AIDVYN+G+MMRDFTY+DDIVE+I R+    + PN E
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  243  WSVEAGSPATSSAPYRVYNIGHGSPVKLMDYIKALESALGIEAKKNMLPMQPGDVYVTYA  302
            WS     P++S APY+VYNIG+ SPV+LM+++ A+E+ LG EA+KN + +QPGDV  TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  303  DTQDLFNATQYKPQMGVEQGVANFVKWYKEFYS  335
            + +DLF   ++KP+  +++GV +FV WY E+Y 
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

95) ESA_01535 in NC_009778


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  359 bits (1348),  Expect = 1e-100, Method: Compositional matrix adjust.
 Identities = 192/334 (58%), Positives = 271/334 (82%), Gaps = 1/334 (0%)

Query  1    MKFLVTGAAGFIGFHVSERLLAAGHQVIGIDNLNDYYDVNLKLARLNLLKQHTAFYFEKI  60
            MK+L+TG+AGFIG H++ +L+  GH VIG+D++NDYY V+LK  RL+ + ++  F F+K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKEN-FTFNKV  59

Query  61   DLADRQAMETLFAQHQPQRVIHLAAQAGVRYSLENPHAYADANLTGHLNVLEGCRHHKVE  120
             L + + +  +F ++QP+ V++LAAQAGVRYS+ENP++Y D+N+ G +N+LE  RH +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMSHTYSHLYGLPTTGLRFF  180
            +L+YASSSSVYG N   PFST D++DHP+SLYAATKK+NELM+HTYSHLY LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTQAIVKGSSIDVYNHGQMRRDFTYIDDIAEAIVRLQDVIPQADP  240
            TVYGPWGRPDMALFKFT+AIV++ +IDVYNHG+M RDFTY+DDI EAI RL    + ++ 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  QWTVENGSPATSSAPYRVYNIGNSSPVALMDYISALEKALGKEAQKNMLPMQPGDVLETS  300
            +W+  +  P++S APY+VYNIGN+SPV LM+++ A+E+ LGKEA+KN + +QPGDV ET 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTSALYEVIGFKPQTSVEEGVKRFVTWYKAFYN  334
            A+   L+  I+FKP+T++++GV++FV WY  +Y+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

96) CSSP291_07415 in NC_020260


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  359 bits (1348),  Expect = 1e-100, Method: Compositional matrix adjust.
 Identities = 192/334 (58%), Positives = 271/334 (82%), Gaps = 1/334 (0%)

Query  1    MKFLVTGAAGFIGFHVSERLLAAGHQVIGIDNLNDYYDVNLKLARLNLLKQHTAFYFEKI  60
            MK+L+TG+AGFIG H++ +L+  GH VIG+D++NDYY V+LK  RL+ + ++  F F+K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKEN-FTFNKV  59

Query  61   DLADRQAMETLFAQHQPQRVIHLAAQAGVRYSLENPHAYADANLTGHLNVLEGCRHHKVE  120
             L + + +  +F ++QP+ V++LAAQAGVRYS+ENP++Y D+N+ G +N+LE  RH +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMSHTYSHLYGLPTTGLRFF  180
            +L+YASSSSVYG N   PFST D++DHP+SLYAATKK+NELM+HTYSHLY LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTQAIVKGSSIDVYNHGQMRRDFTYIDDIAEAIVRLQDVIPQADP  240
            TVYGPWGRPDMALFKFT+AIV++ +IDVYNHG+M RDFTY+DDI EAI RL    + ++ 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  QWTVENGSPATSSAPYRVYNIGNSSPVALMDYISALEKALGKEAQKNMLPMQPGDVLETS  300
            +W+  +  P++S APY+VYNIGN+SPV LM+++ A+E+ LGKEA+KN + +QPGDV ET 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTSALYEVIGFKPQTSVEEGVKRFVTWYKAFYN  334
            A+   L+  I+FKP+T++++GV++FV WY  +Y+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

97) wcfX in NC_014562


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  359 bits (1347),  Expect = 1e-100, Method: Compositional matrix adjust.
 Identities = 192/334 (58%), Positives = 270/334 (81%), Gaps = 1/334 (0%)

Query  1    MNFLVTGAAGFIGFHVSQRLLAAGHQVVGIDNLNDYYDVNLKHARLDLIKADSGFTFIEM  60
            M++L+TG+AGFIG H++++L+  GH V+G+D++NDYY V+LK+ RL  I +   FTF  +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  61   DLADRDAIASLFDQHTFQRVIHLGAQAGVRYSIENPHAYADSNLIGHLNILEGCRHHKIE  120
             L + D ++ +F ++  + V++L+AQAGVRYSIENP++Y DSN++G +NILE  RH +I+
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLLYASSSSVYGLNRKMPFSTEDSVDHPVSLYAATKKANELMSHTYSHLYQLPTTGLRFF  180
            +L+YASSSSVYG N   PFST D++DHP+SLYAATKK+NELM+HTYSHLY+LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTRAMIAGEAIDVYNQGQMKRDFTYIDDIAEAIVRLQDVIPQQDD  240
            TVYGPWGRPDMALFKFT+A++ ++AIDVYN+G+M RDFTY+DDI EAI RL    +  + 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  NWTVETGSPATSSAPYRVYNIGNSQPVTLMNYIEAIEKALGITAKKNLMPMQPGDVLETS  300
            +W+     P++S APY+VYNIGN+ PV LM+++EAIE+ LG  A+KN M +QPGDV ET 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTEALYKAIGFKPQTGVEEGVKNFVDWYRDFYR  334
            A+ + L++ I+FKP+T +++GV++FVDWY ++Y+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

98) EAE_23435 in NC_015663


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  359 bits (1350),  Expect = 8e-101, Method: Compositional matrix adjust.
 Identities = 191/333 (58%), Positives = 273/333 (82%), Gaps = 0/333 (0%)

Query  1    MKFLVTGAAGFIGFHVSQRLLAAGHTVVGIDNMNDYYDVNLKQARLELLDSPLFSFSRLD  60
            MK+L+TG+AGFIG H++++L+  GH V+G+D++NDYY V+LK+ RL  ++   F+F+++ 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  61   IADRVGMEKLFADEKFDRVIHLAAQAGVRYSLENPHAYADANLMGFLNILEGCRHTNVQH  120
            + +  ++ K+F DE+ + V++LAAQAGVRYS+ENP++Y D+N++GF+NILE  RH N+Q+
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  121  LVYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYAHLYGIPTTGLRFFT  180
            L+YASSSSVYG N   PFST D++DHP+SLYAATKK+NELMAHTY+HLY +PTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  181  VYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIVEAVVRVQETIPQPDPE  240
            VYGPWGRPDMALFKFTKA++++++IDVYN G+M RDFTY+DDIVEA+ R+    + P+ E
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  241  WTVEAGSPATSSAPYRVYNIGNSSPVELMDYITALEEAMGMEAKKNMMPMQPGDVLETSA  300
            W+     P++S APY+VYNIGN+SPV LM+++ A+E+ +G EA+KN M +QPGDV ET A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  301  ETRPLYNLVGFRPQTPVKQGVKNFVEWYKAYYK  333
            +   L+  ++F+P+T +++GV++FV+WY  YYK
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

99) N559_1766 in NC_022082


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  359 bits (1350),  Expect = 8e-101, Method: Compositional matrix adjust.
 Identities = 191/333 (58%), Positives = 277/333 (84%), Gaps = 0/333 (0%)

Query  1    MKFLVTGAAGFIGFHIAQRLLNEGHDVVGIDNMNDYYDVSLKQARLDRLASPAFHFQQLD  60
            MK+L+TG+AGFIG H+A++L+++GH V+G+D++NDYY VSLK+ RL  ++   F F+++ 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  61   LADREGMAKLFATEQFDRVIHLAAQAGVRYSLENPYAYADANLMGYLNILEGCRHTKVKH  120
            L + ++++K+F  EQ + V++LAAQAGVRYS+ENP +Y D+N++G++NILE  RH ++++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  121  LVYASSSSVYGLNRKMPFSTEDSVDHPVSLYAATKKANELMAHTYSHLYGIPTTGLRFFT  180
            L+YASSSSVYG N   PFST D++DHP+SLYAATKK+NELMAHTYSHLY +PTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  181  VYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIVEAVVRVQDVIPQANAD  240
            VYGPWGRPDMALFKFTKA++++++IDVYN G+M RDFTY+DDIVEA+ R+    + +N +
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  241  WTVESGSPATSSAPYRVYNIGNSSPVELMDYITALEEALGMEAQKNMMPIQPGDVLDTSA  300
            W+     P++S APY+VYNIGN+SPV LM+++ A+E+ LG EA+KN M +QPGDV +T A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  301  DTQALYDLVGFKPQTSVKEGVKNFVEWYKDYYQ  333
            + + L+  ++FKP+T++++GV++FV+WY +YY+
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

100) Clim_1588 in NC_010803


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  358 bits (1344),  Expect = 2e-100, Method: Compositional matrix adjust.
 Identities = 199/333 (60%), Positives = 272/333 (82%), Gaps = 1/333 (0%)

Query  1    MNVLVTGAAGFIGSHVCQRLLERGERVTGLDNLNDYYDVSLKEARLDWLRPYADFRFVKT  60
            M++L+TG+AGFIGSH+ ++L+ +G+ V G+D++NDYY VSLKE RL  +    +F F K 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DLADRQGMEELFRKGGFEKVVNLAAQAGVRYSIVNPHSYVESNILGFLNILEGCRHNGVE  120
             L + +++  +F     E VVNLAAQAGVRYSI NP++Y++SNI+GF+NILE  RH  ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGANETMPFSVHDNVDHPLSLYAASKKANELMAHTYSHLYNISATGLRFF  180
            +L+YASSSSVYGAN + PFS  DN+DHPLSLYAA+KK+NELMAHTYSHLYN+++TGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFLFTDAILNNRPIKVFNYGKHRRDFTYIDDIVEGVIRTLDHNAESNP  240
            TVYGPWGRPDMALF FT AI+N+++I V+N G+  RDFTY+DDIVE++ R +   A +N 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  EWSGLHPDPGSSRAPWKVYNIGNSQPVNLMDYIGALERQLGKTAEKEFLPMQPGDVPDTY  300
            EWSG +PDPGSS AP KVYNIGN+ PV LM+++ A+E +LGK A K+++ +QPGDVP+TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADVEQLIQDVHYKPETTVEEGVRRFVAWYRDYY  333
            A+V++L++D+++KPETT+++GV +FV WY +YY
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

101) Cpha266_1741 in NC_008639


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  358 bits (1345),  Expect = 2e-100, Method: Compositional matrix adjust.
 Identities = 199/333 (60%), Positives = 268/333 (81%), Gaps = 1/333 (0%)

Query  1    MNVLVTGAAGFIGFHVCRRLLDRGDSVTGLDNMNDYYDVHLKESRLAQLEPEEAFSFVKM  60
            M++L+TG+AGFIG H+ ++L+ +G+ V G+D++NDYY V LKE RL  +  E+ F+F K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKEN-FTFNKV  59

Query  61   DLADRAGMEELFDASRFDRVINLAAQAGVRYSLINPYSYIDSNIQGFLNILEGCRHNGIE  120
             L +  ++  +F   + + V+NLAAQAGVRYS+ NP +YIDSNI GF+NILE  RH  I+
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGANESMPFSVHDNVDHPLSLYAASKKANELMAHTYSHLYGIPSTGLRFF  180
            +L+YASSSSVYGAN S PFS  DN+DHPLSLYAA+KK+NELMAHTYSHLY +P+TGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFLFTEAILAGRPIEVFNFGNHRRDFTYIDDIVEGVLRTLDHPAEPNP  240
            TVYGPWGRPDMALF FT AI+ +++I+V+N GN  RDFTY+DDIVE++ R +  PA PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWTGLKPDPGTSRAPWRVYNIGNSRPVNLMDYIGALERELGKTAEKNFLPMQPGDVPDTY  300
            +W+G  PDPG+S AP +VYNIGN+ PV LM+++ A+E  LGK A KN++ +QPGDVP+TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADVDQLIEDIGYKPETSVDEGIRRFVAWYREYY  333
            A+VD+L+ DI++KPET++++G+ +FV WY EYY
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

102) Ftrac_2665 in NC_014759


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  358 bits (1345),  Expect = 2e-100, Method: Compositional matrix adjust.
 Identities = 209/349 (60%), Positives = 284/349 (82%), Gaps = 16/349 (4%)

Query  1    MKVLVTGSAGFIGYHLANYLLERGDEVVGLDSINDYYDINLKYGRLKQSGIYANDikeee  60
            MK+L+TG+AGFIG HLA+ L+ +G+ V+G+DSINDYY ++LK +RLK  G          
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK---------  51

Query  61   eikssiYQNYTFTKSNLENDIYLSNLFNKHKFDVVINLAAQAGVRYSLSNPKAYIKSNIE  120
                   +N+TF K +LEN   LS++F  ++ +VV+NLAAQAGVRYS+ NP++YI SNI 
Sbjct  52   -------ENFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIV  104

Query  121  GFVNILEACRHNNVKNLVYASSSSVYGSNTKVPFSVHDNVDHPVSLYAASKKSNELMAHT  180
            GF+NILE  RH N++NL+YASSSSVYG+NT  PFS  DN+DHP+SLYAA+KKSNELMAHT
Sbjct  105  GFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHT  164

Query  181  YSHLFGLPTTGLRFFTVYGPWGRPDMALFIFTKAIIEGKPIDVFNYGNMVRDFTYINDIV  240
            YSHL+ LPTTGLRFFTVYGPWGRPDMALF FTKAI+++++IDV+N GNM+RDFTY++DIV
Sbjct  165  YSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIV  224

Query  241  KGIVKTIDNPAKPNEDWNSNSPDPASSKAPYNIYNIGNSSPIKLLDFIEAIEEKLGMNAK  300
             +I + + +PA PN +W++  PDP+SS APY++YNIGN+SP++L++F+EAIE+KLG +A+
Sbjct  225  EAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEAR  284

Query  301  MNKMPIQPGDVPFTYADVTDLTKNFDYKPKTNIREGVANFIEWYLNFYN  349
             N M +QPGDVP TYA+V DL +++D+KP T I++GV +F++WYL++Y+
Sbjct  285  KNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

103) Paes_1510 in NC_011059


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  358 bits (1344),  Expect = 2e-100, Method: Compositional matrix adjust.
 Identities = 196/332 (60%), Positives = 270/332 (82%), Gaps = 1/332 (0%)

Query  3    KILVTGAAGFIGFHVSRRLLERGDEVVGIDNLNSYYDVALKEARLEELEPFGQFRFIRMD  62
            KIL+TG+AGFIG H++++L+ +G+ V+G+D++N YY V+LKE RL  +    +F F ++ 
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKVK  60

Query  63   LADREAMEDLFAIEKFDYVVNLAAQAGVRYSLQNPHAYIDSNIQGFINILEGCRHNHVGH  122
            L + + +  +F  E+ + VVNLAAQAGVRYS++NP++YIDSNI GF+NILE  RH ++ +
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  123  LVYASSSSVYGANETMPFSVHDNVDHPLSLYAATKKANELMAHTYSHLYQIPTTGLRFFT  182
            L+YASSSSVYGAN + PFS  DN+DHPLSLYAATKK+NELMAHTYSHLY++PTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  183  VYGPWGRPDMALFLFTKAIVEGKPIKVFNYGKHRRDFTFIDDITEGVIRTLDHVAAPNPE  242
            VYGPWGRPDMALF FTKAIV++++I V+N G+  RDFT++DDI E++ R +   A+PN E
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  243  WSGLSPDPGSSRAPWRVYNIGNSKPVNLMDYIDALERELGKTAEKEFLPMQPGDVPDTYA  302
            WSG  PDPGSS AP +VYNIGN+ PV LM++++A+E  LGK A K+++ +QPGDVP+TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  303  DVDQLIQDVDYQPKTPVAEGIGRFVEWYRGYY  334
            +VD+L++D+D++P T + +G+ +FV+WY  YY
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

104) MADE_1013075 in NC_011138


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  358 bits (1345),  Expect = 2e-100, Method: Compositional matrix adjust.
 Identities = 198/337 (59%), Positives = 278/337 (83%), Gaps = 4/337 (1%)

Query  1    MKILVTGAAGFIGAAVSQYLINRGDQVVGIDNINDYYDVNLKHARLDEIKSSTAADLFSF  60
            MKIL+TG+AGFIG+ +++ LI++G+ V+G+D+INDYY V+LK+ RL  I    + + F+F
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI----GKENFTF  56

Query  61   IEMGVEERDKMAALFEEHKFDRVVHLAAQAGVRYSLENPNAYVDSNIVGFVNILEGCRHN  120
              + +E+ D ++ +F +++ + VV+LAAQAGVRYS+ENP +Y+DSNIVGF+NILE  RH 
Sbjct  57   NKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHF  116

Query  121  NVEHLVYASSSSVYGANETMPFSEQHNVDHQVSLYAASKKANELMAHTYSHLYDLPTTGL  180
            N+++L+YASSSSVYGAN + PFS  +N+DH +SLYAA+KK+NELMAHTYSHLY+LPTTGL
Sbjct  117  NIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGL  176

Query  181  RFFTVYGPWGRPDMALFKFTKAILEGKTIQVYNYGNHRRDFTYIDDIVEGVIRSLDNVAK  240
            RFFTVYGPWGRPDMALFKFTKAI+++++I+VYN GN  RDFTY+DDIVE++ R + + A 
Sbjct  177  RFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPAS  236

Query  241  PNENWDGSNPDPSTSKAPYKVYNIGAQTPVHLLKFIETLESALGIEAKKELFPMQPGDVP  300
            PN +W G++PDP++S APYKVYNIG ++PV+L+ F+E++E+ LG EA+K+   +QPGDVP
Sbjct  237  PNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVP  296

Query  301  DTYADVSSLVEDTGYQPSTDVETGVKAFVDWYRDFYK  337
            +TYA+V  L  D +++P T ++ GV+ FVDWY ++YK
Sbjct  297  ETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

105) rfbB in NC_016514


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  358 bits (1346),  Expect = 2e-100, Method: Compositional matrix adjust.
 Identities = 194/333 (59%), Positives = 272/333 (82%), Gaps = 0/333 (0%)

Query  5    MKFLVTGAAGFIGANVSKRLLDAGHQVVGIDNLNDYYDVNLKLARLDLLTSGNFTFHKLD  64
            MK+L+TG+AGFIG++++K+L+  GH V+G+D++NDYY V+LK  RL  +   NFTF+K+ 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  65   LADREGMAALFAREKFDRAIHLAAQAGVRYSLENPHAYADANLVGHLNVLEGCRHHKVQH  124
            L + ++++ +F  E+ +  ++LAAQAGVRYS+ENP++Y D+N+VG +N+LE  RH ++Q+
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  125  LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMSHTYSHLYNLPTTGLRFFT  184
            L+YASSSSVYG N   PFST D++DHP+SLYAATKK+NELM+HTYSHLYNLPTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  185  VYGPWGRPDMALFKFTKAMIEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPQADAN  244
            VYGPWGRPDMALFKFTKA++++++IDVYN G+M RDFTY+DDI EAI RL    + ++ +
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  245  WTVETGSPATSSAPYRVYNIGNSSPVELMDYITALEEALGIEAEKNMMPIQPGDVLETSA  304
            W+     P++S APY+VYNIGN+SPV LM+++ A+E+ LG EA KN M +QPGDV ET A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  305  DTKALYEVIGFKPQTSVKEGVKNFVDWYRDFYK  337
            +   L+  I+FKP+T++++GV++FVDWY ++YK
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

106) A79E_1612 in NC_018522


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  358 bits (1346),  Expect = 2e-100, Method: Compositional matrix adjust.
 Identities = 190/333 (58%), Positives = 277/333 (84%), Gaps = 0/333 (0%)

Query  1    MKFLVTGAAGFIGFHIAQRLLNEGHDVVGIDNMNDYYDVSLKQARLDRLASPAFHFQQLD  60
            MK+L+TG+AGFIG H+A++L+++GH V+G+D++NDYY VSLK+ RL  ++   F F+++ 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  61   LADREGMAKLFATEQFDRVIHLAAQAGVRYSLENPYAYADANLMGYLNILEGCRHTKVKH  120
            L + ++++K+F  EQ + V++LAAQAGVRYS+ENP +Y D+N++G++NILE  RH ++++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  121  LVYASSSSVYGLNRKMPFSTEDSVDHPVSLYAATKKANELMAHTYSHLYGIPTTGLRFFT  180
            L+YASSSSVYG N   PFST D++DHP+SLYAATKK+NELMAHTYSHLY +PTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  181  VYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIVEAVVRVQDVIPQANAD  240
            VYGPWGRPDMALFKFTKA++++++IDVYN G+M RDFTY+DDIVEA+ R+    + +N +
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  241  WTVESGSPATSSAPYRVYNIGNSSPVELMDYITALEEALGMEAQKNMMPIQPGDVLDTSA  300
            W+     P++S APY+VYNIGN+SPV LM+++ A+E+ LG EA+KN M +QPGDV +T A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  301  DTQPLYDLVGFRPQTSVKEGVKNFVEWYKDYYQ  333
            + + L+  ++F+P+T++++GV++FV+WY +YY+
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

107) uge in NC_009648


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  358 bits (1346),  Expect = 2e-100, Method: Compositional matrix adjust.
 Identities = 193/333 (58%), Positives = 278/333 (84%), Gaps = 0/333 (0%)

Query  1    MKFLVTGAAGFIGFHIAQRLLNEGHNVVGIDNMNDYYDVSLKQARLDRLAYPAFHFQQLD  60
            MK+L+TG+AGFIG H+A++L+++GH V+G+D++NDYY VSLK+ RL  ++   F F+++ 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  61   LADREGMAKLFATEQFDRVIHLAAQAGVRYSLENPYAYADANLMGYLNILEGCRHTKVKH  120
            L + ++++K+F  EQ + V++LAAQAGVRYS+ENP +Y D+N++G++NILE  RH ++++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  121  LVYASSSSVYGLNRKMPFSTEDSVDHPVSLYAATKKANELMAHTYSHLYGIPTTGLRFFT  180
            L+YASSSSVYG N   PFST D++DHP+SLYAATKK+NELMAHTYSHLY +PTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  181  VYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIVEAVVRVLDVIPQANAD  240
            VYGPWGRPDMALFKFTKA++++++IDVYN G+M RDFTY+DDIVEA+ R++   + +N +
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  241  WTVESGSPATSSAPYRVYNIGNSSPVELMDYITALEEALGMEAQKNMMPIQPGDVLDTSA  300
            W+     P++S APY+VYNIGN+SPV LM+++ A+E+ LG EA+KN M +QPGDV +T A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  301  DTQPLYDLVGFKPQTSVKDGVKNFVDWYKDYYQ  333
            + + L+  ++FKP+T+++DGV++FVDWY +YY+
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

108) uge in NC_012731


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  358 bits (1346),  Expect = 2e-100, Method: Compositional matrix adjust.
 Identities = 190/333 (58%), Positives = 277/333 (84%), Gaps = 0/333 (0%)

Query  1    MKFLVTGAAGFIGFHIAQRLLNEGHDVVGIDNMNDYYDVSLKQARLDRLASPAFHFQQLD  60
            MK+L+TG+AGFIG H+A++L+++GH V+G+D++NDYY VSLK+ RL  ++   F F+++ 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  61   LADREGMAKLFATEQFDRVIHLAAQAGVRYSLENPYAYADANLMGYLNILEGCRHTKVKH  120
            L + ++++K+F  EQ + V++LAAQAGVRYS+ENP +Y D+N++G++NILE  RH ++++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  121  LVYASSSSVYGLNRKMPFSTEDSVDHPVSLYAATKKANELMAHTYSHLYGIPTTGLRFFT  180
            L+YASSSSVYG N   PFST D++DHP+SLYAATKK+NELMAHTYSHLY +PTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  181  VYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIVEAVVRVQDVIPQANAD  240
            VYGPWGRPDMALFKFTKA++++++IDVYN G+M RDFTY+DDIVEA+ R+    + +N +
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  241  WTVESGSPATSSAPYRVYNIGNSSPVELMDYITALEEALGMEAQKNMMPIQPGDVLDTSA  300
            W+     P++S APY+VYNIGN+SPV LM+++ A+E+ LG EA+KN M +QPGDV +T A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  301  DTQPLYDLVGFRPQTSVKEGVKNFVEWYKDYYQ  333
            + + L+  ++F+P+T++++GV++FV+WY +YY+
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

109) Kvar_1564 in NC_013850


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  358 bits (1346),  Expect = 2e-100, Method: Compositional matrix adjust.
 Identities = 190/333 (58%), Positives = 277/333 (84%), Gaps = 0/333 (0%)

Query  1    MKFLVTGAAGFIGFHIAQRLLNEGHDVVGIDNMNDYYDVSLKQARLDRLASPAFHFQQLD  60
            MK+L+TG+AGFIG H+A++L+++GH V+G+D++NDYY VSLK+ RL  ++   F F+++ 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  61   LADREGMAKLFAAEQFDRAIHLAAQAGVRYSLENPYAYADANLMGYLNILEGCRHTKVKH  120
            L + ++++K+F  EQ +  ++LAAQAGVRYS+ENP +Y D+N++G++NILE  RH ++++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  121  LVYASSSSVYGLNRKMPFSTEDSVDHPVSLYAATKKANELMAHTYSHLYSIPTTGLRFFT  180
            L+YASSSSVYG N   PFST D++DHP+SLYAATKK+NELMAHTYSHLY++PTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  181  VYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIVEAVVRVQDVIPQANAD  240
            VYGPWGRPDMALFKFTKA++++++IDVYN G+M RDFTY+DDIVEA+ R+    + +N +
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  241  WTVESGSPATSSAPYRVYNIGNSSPVELMDYITALEEALGMEAKKNMMPIQPGDVLDTSA  300
            W+     P++S APY+VYNIGN+SPV LM+++ A+E+ LG EA+KN M +QPGDV +T A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  301  DTQPLYDLVGFKPQTSVKEGVKNFVEWYKDYYQ  333
            + + L+  ++FKP+T++++GV++FV+WY +YY+
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

110) I607_13205 in NC_021710


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  358 bits (1343),  Expect = 3e-100, Method: Compositional matrix adjust.
 Identities = 197/337 (59%), Positives = 277/337 (83%), Gaps = 4/337 (1%)

Query  1    MKILVTGAAGFIGAAVSQYLINRGDQVVGIDNINDYYDVNLKHARLDEIKSSSAANLFSF  60
            MKIL+TG+AGFIG+ +++ LI++G+ V+G+D+INDYY V+LK+ RL  I   +    F+F
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKEN----FTF  56

Query  61   VEMGVEERDKMAALFEEHKFDRVVHLAAQAGVRYSLENPNAYVDSNIVGFVNILEGCRHN  120
              + +E+ D ++ +F +++ + VV+LAAQAGVRYS+ENP +Y+DSNIVGF+NILE  RH 
Sbjct  57   NKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHF  116

Query  121  NVGHLVYASSSSVYGANETMPFSEQHNVDHQVSLYAASKKANELMAHTYSHLYHLPTTGL  180
            N+ +L+YASSSSVYGAN + PFS  +N+DH +SLYAA+KK+NELMAHTYSHLY+LPTTGL
Sbjct  117  NIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGL  176

Query  181  RFFTVYGPWGRPDMALFKFTKAILEGKTIQVYNYGNHRRDFTYIDDIVQGVIRSLDNVAK  240
            RFFTVYGPWGRPDMALFKFTKAI+++++I+VYN GN  RDFTY+DDIV+++ R + + A 
Sbjct  177  RFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPAS  236

Query  241  PNENWDGSNPDPSTSKAPYKVYNIGAQTPVHLLKFIETLESALGIEAKKELLPMQPGDVP  300
            PN +W G++PDP++S APYKVYNIG ++PV+L+ F+E++E+ LG EA+K+ + +QPGDVP
Sbjct  237  PNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVP  296

Query  301  DTYADVSSLVADTGYQPSTDVETGVKAFVDWYRNFYK  337
            +TYA+V  L  D +++P T ++ GV+ FVDWY ++YK
Sbjct  297  ETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

111) I876_13590 in NC_021717


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  358 bits (1343),  Expect = 3e-100, Method: Compositional matrix adjust.
 Identities = 197/337 (59%), Positives = 277/337 (83%), Gaps = 4/337 (1%)

Query  1    MKILVTGAAGFIGAAVSQYLINRGDQVVGIDNINDYYDVNLKHARLDEIKSSSAANLFSF  60
            MKIL+TG+AGFIG+ +++ LI++G+ V+G+D+INDYY V+LK+ RL  I   +    F+F
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKEN----FTF  56

Query  61   VEMGVEERDKMAALFEEHKFDRVVHLAAQAGVRYSLENPNAYVDSNIVGFVNILEGCRHN  120
              + +E+ D ++ +F +++ + VV+LAAQAGVRYS+ENP +Y+DSNIVGF+NILE  RH 
Sbjct  57   NKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHF  116

Query  121  NVGHLVYASSSSVYGANETMPFSEQHNVDHQVSLYAASKKANELMAHTYSHLYHLPTTGL  180
            N+ +L+YASSSSVYGAN + PFS  +N+DH +SLYAA+KK+NELMAHTYSHLY+LPTTGL
Sbjct  117  NIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGL  176

Query  181  RFFTVYGPWGRPDMALFKFTKAILEGKTIQVYNYGNHRRDFTYIDDIVQGVIRSLDNVAK  240
            RFFTVYGPWGRPDMALFKFTKAI+++++I+VYN GN  RDFTY+DDIV+++ R + + A 
Sbjct  177  RFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPAS  236

Query  241  PNENWDGSNPDPSTSKAPYKVYNIGAQTPVHLLKFIETLESALGIEAKKELLPMQPGDVP  300
            PN +W G++PDP++S APYKVYNIG ++PV+L+ F+E++E+ LG EA+K+ + +QPGDVP
Sbjct  237  PNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVP  296

Query  301  DTYADVSSLVADTGYQPSTDVETGVKAFVDWYRNFYK  337
            +TYA+V  L  D +++P T ++ GV+ FVDWY ++YK
Sbjct  297  ETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

112) I634_13450 in NC_021712


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  358 bits (1343),  Expect = 3e-100, Method: Compositional matrix adjust.
 Identities = 197/337 (59%), Positives = 277/337 (83%), Gaps = 4/337 (1%)

Query  1    MKILVTGAAGFIGAAVSQYLINRGDQVVGIDNINDYYDVNLKHARLDEIKSSSAANLFSF  60
            MKIL+TG+AGFIG+ +++ LI++G+ V+G+D+INDYY V+LK+ RL  I   +    F+F
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKEN----FTF  56

Query  61   VEMGVEERDKMAALFEEHKFDRVVHLAAQAGVRYSLENPNAYVDSNIVGFVNILEGCRHN  120
              + +E+ D ++ +F +++ + VV+LAAQAGVRYS+ENP +Y+DSNIVGF+NILE  RH 
Sbjct  57   NKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHF  116

Query  121  NVGHLVYASSSSVYGANETMPFSEQHNVDHQVSLYAASKKANELMAHTYSHLYHLPTTGL  180
            N+ +L+YASSSSVYGAN + PFS  +N+DH +SLYAA+KK+NELMAHTYSHLY+LPTTGL
Sbjct  117  NIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGL  176

Query  181  RFFTVYGPWGRPDMALFKFTKAILEGKTIQVYNYGNHRRDFTYIDDIVQGVIRSLDNVAK  240
            RFFTVYGPWGRPDMALFKFTKAI+++++I+VYN GN  RDFTY+DDIV+++ R + + A 
Sbjct  177  RFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPAS  236

Query  241  PNENWDGSNPDPSTSKAPYKVYNIGAQTPVHLLKFIETLESALGIEAKKELLPMQPGDVP  300
            PN +W G++PDP++S APYKVYNIG ++PV+L+ F+E++E+ LG EA+K+ + +QPGDVP
Sbjct  237  PNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVP  296

Query  301  DTYADVSSLVADTGYQPSTDVETGVKAFVDWYRNFYK  337
            +TYA+V  L  D +++P T ++ GV+ FVDWY ++YK
Sbjct  297  ETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

113) SAR116_1941 in NC_014010


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  358 bits (1343),  Expect = 3e-100, Method: Compositional matrix adjust.
 Identities = 191/335 (58%), Positives = 278/335 (83%), Gaps = 1/335 (0%)

Query  2    VKILVTGAAGFIGMHSSLRLLARGDQVIGVDNLNDYYDVSLKQARLARLTSHKNFSFHQI  61
            +KIL+TG+AGFIG H + +L+ +G+ VIGVD++NDYY VSLK+ RL  + +  NF+F+++
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  62   SVEDKDAMESLFATQKPDRVIHLAAQAGVRYSLTNPHAYIDANLQGFINILEGCRHNDVV  121
             +E+ D +  +F  ++P+ V++LAAQAGVRYS+ NP++YID+N+ GF+NILE  RH ++ 
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  122  HLAYASSSSVYGGNVAMPFSEHHNIDHPVSLYAATKKANELMAHTYSHLYDLPTTGLRFF  181
            +L YASSSSVYG+N + PFS  +NIDHP+SLYAATKK+NELMAHTYSHLY+LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  182  TVYGPWGRPDMALFLFTKAMMEGREIDVFNNGEMVRDFTYIDDIVEGVIRVLDKTATANP  241
            TVYGPWGRPDMALF FTKA+++++ IDV+N+G+M+RDFTY+DDIVE++ R++ K A++N 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  242  DYDAHNPDPATAAAPYRVFNIGNGNPTPLMDYIGALESALGIEAKKNFMPMQPGDVPATS  301
            +  + +PDP+++ APY+V+NIGN +P  LM+++ A+E+ LG EA+KN+M +QPGDVP T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  302  ADTTELGKWVGFQPDTAVRDGVQYFVEWYLGYYGR  336
            A+  +L + ++F+P+T+++DGV+ FV+WYL YY +
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

114) H650_05960 in NC_021500


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  358 bits (1343),  Expect = 3e-100, Method: Compositional matrix adjust.
 Identities = 193/333 (58%), Positives = 270/333 (82%), Gaps = 0/333 (0%)

Query  1    MKFLVTGAAGFIGYHVSERLLKAGHQVVGIDNLNDYYDVSLKQARLDLLASPDFHFHKID  60
            MK+L+TG+AGFIG H++ +L+K GH V+G+D++NDYY VSLK+ RL  ++  +F F+K+ 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  61   LADREGMAQLFAREKFDRVIHLAAQAGVRYSLENPHVYAESNLIGHLNVLEGCRHHKVQH  120
            L + ++++++F  E+ + V++LAAQAGVRYS+ENP+ Y +SN++G +N+LE  RH ++Q+
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  121  LLYASSSSVYGLNRKMPFSTDDPVDHPVSLYAATKKANELMSHTYSHLYGLPTTGLRFFT  180
            L+YASSSSVYG N   PFST D +DHP+SLYAATKK+NELM+HTYSHLY LPTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  181  VYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIVEAIIRMQDVIPQPDAT  240
            VYGPWGRPDMALFKFTKA++++++IDVYN G+M RDFTY+DDIVEAI R+    + P+  
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  241  WTVESGSPATSSAPYHVYNIGNSSPVELMDYITALEEALGIEAQKNMMPIQPGDVLETSA  300
            W+     P++S APY VYNIGN+SPV LM+++ A+E+ LG EA+KN M +QPGDV ET A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  301  DTQPLYEVTGFKPQTSVKDGVKRFVDWYRAFYN  333
            + + L+   +FKP+T+++DGV++FVDWY  +Y+
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

115) SOD_c25480 in NC_021591


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  358 bits (1343),  Expect = 3e-100, Method: Compositional matrix adjust.
 Identities = 191/334 (58%), Positives = 272/334 (82%), Gaps = 1/334 (0%)

Query  1    MKFLVTGAAGFIGYHIAERLLAAGHQVVGIDNLNDYYDVGLKMARLELLSDKSEFQFIKL  60
            MK+L+TG+AGFIG H+A +L+  GH V+G+D++NDYY V+LK  RL  ++ K +F F K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG-KENFTFNKV  59

Query  61   DLADREGMAGLFAEQKFQRVIHLGAQAGVRYSLENPLAYADANLIGHLNVLEGCRHNKVE  120
             L + ++++ +F +++ + V++L+AQAGVRYS+ENP +Y D+N++G +N+LE  RH +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLLYASSSSVYGLNRKLPFATEDSVDHPVSLYAATKKANELMSHSYSHLYGIPTTGLRFF  180
            +L+YASSSSVYG N   PF+T D++DHP+SLYAATKK+NELM+H+YSHLY +PTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTKAILAGESIDVYNHGEMHRDFTYIDDIAEAIVRLQAVIPQADA  240
            TVYGPWGRPDMALFKFTKAI+ +++IDVYNHG+M RDFTY+DDI EAI RL    + ++ 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  AWTVEQGSPASSSAPYRVYNIGNSSPVKLMEYIRALEQALGIEARKNMLPMQPGDVLDTS  300
             W+  +  P+SS APY+VYNIGN+SPV+LME++ A+E+ LG EARKN + +QPGDV +T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTAELYRVIGFKPETGVEEGVKRFVEWYKSFYK  334
            A+  +L+R I+FKPET +++GV++FV+WY  +YK
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

116) SMWW4_v1c27200 in NC_020211


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  358 bits (1343),  Expect = 3e-100, Method: Compositional matrix adjust.
 Identities = 190/334 (57%), Positives = 270/334 (81%), Gaps = 1/334 (0%)

Query  1    MKFLVTGAAGFIGYHVAERLLTAGHQVVGIDNLNDYYDVGLKMARLDRLADKPGFRFIKL  60
            MK+L+TG+AGFIG H+A +L+  GH V+G+D++NDYY V+LK  RL  ++ K  F F K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG-KENFTFNKV  59

Query  61   DLADREGMATLFAEHQFQRVIHLGAQAGVRYSLVNPLAYADANLIGHLNVLEGCRHNKVE  120
             L + ++++ +F ++Q + V++L+AQAGVRYS+ NP +Y D+N++G +N+LE  RH +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLLYASSSSVYGLNRKLPFATEDSVDHPVSLYAATKKANELMSHSYAHLYGLPTTGLRFF  180
            +L+YASSSSVYG N   PF+T D++DHP+SLYAATKK+NELM+H+Y+HLY LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTKAILAGESIDVYNHGEMHRDFTYIDDITEAIVRLQAVIPQADP  240
            TVYGPWGRPDMALFKFTKAI+ +++IDVYNHG+M RDFTY+DDI EAI RL    + ++ 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  SWTVEQGSPATSSAPYHVYNIGNNTPVKLMEYITALEQALGLTARKNMLPMQPGDVMDTS  300
             W+  +  P++S APY VYNIGNN+PV+LME++ A+E+ LG  ARKN + +QPGDV +T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTAELYRDIGFKPETSVEEGVKRFVDWYKAFYQ  334
            A+  +L+RDI+FKPET++++GV++FVDWY  +Y+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

117) Plut_1400 in NC_007512


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  357 bits (1342),  Expect = 3e-100, Method: Compositional matrix adjust.
 Identities = 202/333 (61%), Positives = 265/333 (80%), Gaps = 1/333 (0%)

Query  1    MNVLVTGAAGFIGSSVSGRLLERGDCVTGVDNMNDYYEVSLKEARLQQLTPHEAFTFVEA  60
            M++L+TG+AGFIGS ++ +L+ +G+ V GVD++NDYY VSLKE RL+ +   E FTF   
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG-KENFTFNKV  59

Query  61   DIADRKAMEELFARGKFDRVVNLAAQAGVRYSITNPHSYIESNIVGFINILEGCRHNGVR  120
             + +   +  +F   + + VVNLAAQAGVRYSI NP++YI+SNIVGF+NILE  RH  ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGANETMPFSVHDNVDHPLSLYAASKKANELMAHTYSHLYRLPTTGLRFF  180
            +L+YASSSSVYGAN + PFS  DN+DHPLSLYAA+KK+NELMAHTYSHLY LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFLFTDAILKGKPIKVFNYGKHRRDFTYIDDIVEGVIRTLDHVAEPNP  240
            TVYGPWGRPDMALF FT AI+++++I V+N G+  RDFTY+DDIVE++ R +   A PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  LWSGAKPDPGSSRAPWRVYNIGNSKPVELMDYIAALERELGRTAEKEMLPLQPGDVPDTY  300
             WSGA PDPGSS AP +VYNIGN+ PV LM+++ A+E  LG+ A K+ + LQPGDVP+TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADVDQLIEDVQYKPSTTVDDGIRRFVAWYREYY  333
            A+VD+L+ D+++KP TT++DG+ +FV WY EYY
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

118) UWK_02513 in NC_020304


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  357 bits (1341),  Expect = 4e-100, Method: Compositional matrix adjust.
 Identities = 200/334 (60%), Positives = 272/334 (82%), Gaps = 1/334 (0%)

Query  12   KILVTGTAGFIGSFLARTLRESGCEVIGIDTITDYYDVGLKKDRLAKIAGGEGFQNLEVD  71
            KIL+TGTAGFIGS LA+ L   G  VIG+D+I DYY V+LK DRL  I G E F    V 
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKVK  60

Query  72   ISDRGAMEKLFTDHSFDAVVNLAAQPGVRYSLINPASYIDTNIVGFANLLEGCRHSGVKH  131
            + + + + K+F D+  + VVNLAAQ+GVRYS+ NP +YID+NIVGF N+LE  RH  +++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  132  FVYASSSSVYGANTHQPYSEHDNVNHPVSLYAASKKSNELMAHSYSHLFGLPCTGLRFFT  191
            ++YASSSSVYGANT +P+S  DN++HP+SLYAA+KKSNELMAH+YSHL+ LP TGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  192  VYGPWGRPDMAPMLFARAILAGEPINVFNNGNMERDFTFIDDIVEGVARVIQKPAAPDFE  251
            VYGPWGRPDMA   F++AI+ +++I+V+N+GNM RDFT++DDIVE+++R+++KPA+P+ E
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  252  WKSEAPDPATSYCPYRVYNIGNNRKERLLYFIQLLEENLGKKADKNFLPMQPGDVQATYA  311
            W +  PDP++SY PY+VYNIGNN   RL+ F++ +E++LGK A KN++ +QPGDV  TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  312  NVDDLIRDFDYKPDTPLDVGVKRFVDWYLDYYKQ  345
            NVDDL+RD+D+KP+T ++ GV++FVDWYL+YYK+
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

119) LAW_00599 in NC_020127


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  357 bits (1341),  Expect = 4e-100, Method: Compositional matrix adjust.
 Identities = 197/333 (60%), Positives = 271/333 (82%), Gaps = 1/333 (0%)

Query  1    MNVLVTGAAGFIGFHLCRRLLDEGHSVVGIDNLNDYYSVTLKKDRLALLMDEPNFTFSSI  60
            M++L+TG+AGFIG HL ++L+ +GH V+G+D++NDYYSV+LK DRL  +  E NFTF+ +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKV  59

Query  61   DIVNLPNLQELFLQYRFSHVVNLAAQAGVRYSIENPSSYIQSNLVGFGNILECCRHTEVE  120
             + N  +L  +F++ +   VVNLAAQAGVRYSIENP +YI+SN+VGF NILEC RH +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVFASSSSVYGLNTLMPFSVHQGTNHPISLYGASKKANELMAHAYSHLYNLPSTGLRFF  180
            +L++ASSSSVYG NT  PFS  +  +HP+SLY+A+KK+NELMAH+YSHLYNLP+TGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFLFTKAILSGEPISVFNEGRMRRDFTYIDDIIEGVIRVMKKTPKINE  240
            TVYGPWGRPDMALF FTKAI+++++I V+N+G M RDFTY+DDI+E++ R++KK +  N 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  NWNSHSPDPSSSKAPWKIYNIGNNNTVQLSEFIEVLEVELGKKAIKEYLPMQPGDVEATW  300
            +W++  PDP+SS AP K+YNIGNN+ V+L EF+E +E  LGK A K+Y+ +QPGDV  T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADIDDLKHDVDFSPNTPIEYGIKKFVEWYKSYY  333
            A++DDL +D+DF P+T I+ G++KFV+WY  YY
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

120) LI0580 in NC_008011


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  357 bits (1341),  Expect = 4e-100, Method: Compositional matrix adjust.
 Identities = 197/333 (60%), Positives = 271/333 (82%), Gaps = 1/333 (0%)

Query  1    MNVLVTGAAGFIGFHLCRRLLDEGHSVVGIDNLNDYYSVTLKKDRLALLMDEPNFTFSSI  60
            M++L+TG+AGFIG HL ++L+ +GH V+G+D++NDYYSV+LK DRL  +  E NFTF+ +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKV  59

Query  61   DIVNLPNLQELFLQYRFSHVVNLAAQAGVRYSIENPSSYIQSNLVGFGNILECCRHTEVE  120
             + N  +L  +F++ +   VVNLAAQAGVRYSIENP +YI+SN+VGF NILEC RH +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVFASSSSVYGLNTLMPFSVHQGTNHPISLYGASKKANELMAHAYSHLYNLPSTGLRFF  180
            +L++ASSSSVYG NT  PFS  +  +HP+SLY+A+KK+NELMAH+YSHLYNLP+TGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFLFTKAILSGEPISVFNEGRMRRDFTYIDDIIEGVIRVMKKTPKINE  240
            TVYGPWGRPDMALF FTKAI+++++I V+N+G M RDFTY+DDI+E++ R++KK +  N 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  NWNSHSPDPSSSKAPWKIYNIGNNNTVQLSEFIEVLEVELGKKAIKEYLPMQPGDVEATW  300
            +W++  PDP+SS AP K+YNIGNN+ V+L EF+E +E  LGK A K+Y+ +QPGDV  T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADIDDLKHDVDFSPNTPIEYGIKKFVEWYKSYY  333
            A++DDL +D+DF P+T I+ G++KFV+WY  YY
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

121) AMBLS11_13075 in NC_018692


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  357 bits (1342),  Expect = 4e-100, Method: Compositional matrix adjust.
 Identities = 196/337 (59%), Positives = 279/337 (83%), Gaps = 4/337 (1%)

Query  1    MKILVTGAAGFIGAAVSQYLINRGDQVVGIDNINDYYDINLKHARLNEIKSSTAADLFSF  60
            MKIL+TG+AGFIG+ +++ LI++G+ V+G+D+INDYY ++LK+ RL+ I    + + F+F
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI----GKENFTF  56

Query  61   VEMGVEERDKMAVLFEEHKFDRVVHLAAQAGVRYSLENPNAYVDSNIVGFVNILEGCRHN  120
              + +E+ D ++ +F +++ + VV+LAAQAGVRYS+ENP +Y+DSNIVGF+NILE  RH 
Sbjct  57   NKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHF  116

Query  121  KVEHLVYASSSSVYGANETMPFSEQHNVDHQVSLYAASKKANELMAHTYSHLYNLPTTGL  180
            ++++L+YASSSSVYGAN + PFS  +N+DH +SLYAA+KK+NELMAHTYSHLYNLPTTGL
Sbjct  117  NIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGL  176

Query  181  RFFTVYGPWGRPDMALFKFTKAILEGKTIQVYNYGNHRRDFTYIDDIVEGVIRSLDNVAK  240
            RFFTVYGPWGRPDMALFKFTKAI+++++I+VYN GN  RDFTY+DDIVE++ R + + A 
Sbjct  177  RFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPAS  236

Query  241  PNESWDGSNPDPSTSKAPYKVYNIGAQTPVHLLKFIETLESALGIEAKKELLPIQPGDVP  300
            PN  W G++PDP++S APYKVYNIG ++PV+L+ F+E++E+ LG EA+K+ + +QPGDVP
Sbjct  237  PNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVP  296

Query  301  DTYADVSSLVADTGYQPSTNVETGVKAFVDWYRNFYN  337
            +TYA+V  L  D +++P T ++ GV+ FVDWY ++Y+
Sbjct  297  ETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

122) Shewana3_4089 in NC_008577


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  357 bits (1342),  Expect = 4e-100, Method: Compositional matrix adjust.
 Identities = 191/335 (58%), Positives = 264/335 (79%), Gaps = 1/335 (0%)

Query  1    MKYLVTGAAGFIGAKVSERLCAQGHEVVGIDNLNDYYDVGLKLARLAPLEALSNFRFIKL  60
            MK L+TG+AGFIG+ ++ +L  QGH V+G+D++NDYY V+LK  RL ++    NF F K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DLADRDGIATLFAEQGFRRVIHLAAQAGVRYSLDNPLAYADSNLVGHLTILEGCRHHKIE  120
             L + D+++ +F ++    V++LAAQAGVRYS++NP +Y DSN+VG + ILE  RH +I+
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGLNQKMPFSTEDSVDHPISLYAATKKANELMSHTYSHLYQLPTTGLRFF  180
            +L+YASSSSVYG N   PFST D++DHP+SLYAATKK+NELM+HTYSHLY+LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTKAILAGDIIDVYNHGDLSRDFTYIDDIVEGIIRVQDKPPRPTP  240
            TVYGPWGRPDMALFKFTKAI+ ++ IDVYNHG++ RDFTY+DDIVE+I R+  KP+ P  
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWRVETGTPANSSAPYRVFNIGNGSPVQLLDFITALESALGIEANKQFLPMQPGDVHSTW  300
            +W      P++S APY+V+NIGN SPV+L++F+ A+E+ LG EA K+++ +QPGDV  T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTEDLFKAVGYKPQVDINTGVGRFVEWYRAFYAK  335
            A+ +DLF+ +++KP+  I+ GV +FV+WY  +Y K
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

123) CCC13826_0468 in NC_009802


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  357 bits (1341),  Expect = 5e-100, Method: Compositional matrix adjust.
 Identities = 207/348 (60%), Positives = 271/348 (78%), Gaps = 16/348 (4%)

Query  1    MKILVTGTAGFIGFHLANALVARGDEVVGYDVINDYYDVNLKLARLKTAGFDVSEIDYGK  60
            MKIL+TGTAGFIG HLA+ L+ +G+ V+G D INDYY V+LK  RLK+ G          
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG----------  50

Query  61   LITSKMHPNLKFIKADLADEKTMKELFEKQKFDVVVNLAAQAGVRYSLINPKAYIDSNIT  120
                    N+ F K  L +   +  +F  ++ +VVVNLAAQAGVRYS+ NP++YIDSNI 
Sbjct  51   ------KENFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIV  104

Query  121  GFMNILECCRHNEIKNLVYASSSSVYGLNENMPFSTHEGVNHPISLYAATKKSNEMMAHT  180
            GFMNILEC RH +I+NL+YASSSSVYG N + PFST + ++HP+SLYAATKKSNE+MAHT
Sbjct  105  GFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHT  164

Query  181  YSHLFNVPTTGLRFFTVYGPWGRPDMALFLFVDAALKDKTIDVFNYGKMKRDFTYVDDIV  240
            YSHL+N+PTTGLRFFTVYGPWGRPDMALF F  A ++D++IDV+N G+M RDFTYVDDIV
Sbjct  165  YSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIV  224

Query  241  KGIIKCIDNPAKPNPNWDAKHPDPATSKAPFKVYNIGNNSPVELMDYIKAVEIKIGREIK  300
             +I + + +PA PN +W + +PDP++S AP+KVYNIGNNSPV LM+++ A+E K+G+E +
Sbjct  225  EAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEAR  284

Query  301  KNFLPLQAGDVPATFADVSDLVADFDYKPNTKVNDGVAKFVEWYSEFY  348
            KN++ LQ+GDVP T+A+V DL  D+D+KP+T ++DGV KFV+WY E+Y
Sbjct  285  KNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

124) KPN2242_15530 in NC_017540


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  357 bits (1340),  Expect = 5e-100, Method: Compositional matrix adjust.
 Identities = 190/333 (58%), Positives = 276/333 (83%), Gaps = 0/333 (0%)

Query  1    MKFLISGAAGFIGFHIAQRLLNEGHDVVGIDNMNDYYDVSLKQARLDRLASPAFHFQQLD  60
            MK+LI+G+AGFIG H+A++L+++GH V+G+D++NDYY VSLK+ RL  ++   F F+++ 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  61   LADREGMAKLFATEQFDRVIHLAAQAGVRYSLENPYAYADANLMGYLNILEGCRHTKVKH  120
            L + ++++K+F  EQ + V++LAAQAGVRYS+ENP +Y D+N++G++NILE  RH ++++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  121  LVYASSSSVYGLNRKMPFSTEDSVDHPVSLYAATKKANELMAHTYSHLYGIPTTGLRFFT  180
            L+YASSSSVYG N   PFST D++DHP+SLYAATKK+NELMAHTYSHLY +PTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  181  VYGPWGRPDMALFKFMKAMLEGKSIDVYNYGKMKRDFTYIDDIVEAVVRVQDVIPQANAN  240
            VYGPWGRPDMALFKF KA++++++IDVYN G+M RDFTY+DDIVEA+ R+    + +N +
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  241  WTVESGSPATSSAPYRVYNIGNSSPVELMDYITALEEALGMEAQKNMMPIQPGDVLDTSA  300
            W+     P++S APY+VYNIGN+SPV LM+++ A+E+ LG EA+KN M +QPGDV +T A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  301  DTQPLYDLVGFKPQTSVKEGVKNFVEWYKDYYQ  333
            + + L+  ++FKP+T++++GV++FV+WY +YY+
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

125) uge in NC_021232


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  357 bits (1341),  Expect = 5e-100, Method: Compositional matrix adjust.
 Identities = 191/333 (58%), Positives = 276/333 (83%), Gaps = 0/333 (0%)

Query  1    MKFLVTGAAGFIGYHIAQRLLNEGHDVVGIDNMNDYYDVSLKQARLDRLASPAFHFQQLD  60
            MK+L+TG+AGFIG H+A++L+++GH V+G+D++NDYY VSLK+ RL  ++   F F+++ 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  61   LADREGMAKLFATEQFDRVIHLAAQAGVRYSLENPYAYADANMMGYLNILEGCRHTKVKH  120
            L + ++++K+F  EQ + V++LAAQAGVRYS+ENP +Y D+N++G++NILE  RH ++++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  121  LVYASSSSVYGLNRKMPFSTQDSVDHPVSLYAATKKANELTAHTYSHLYGIPTTGLRFFT  180
            L+YASSSSVYG N   PFST D++DHP+SLYAATKK+NEL AHTYSHLY +PTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  181  VYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIVEAVVRVQDVIPQANAD  240
            VYGPWGRPDMALFKFTKA++++++IDVYN G+M RDFTY+DDIVEA+ R+    + +N +
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  241  WTVESGSPATSSAPYRVYNIGNSSPVELMDYITALEEALGMEAQKNMMPIQPGDVLDTSA  300
            W+     P++S APY+VYNIGN+SPV LM+++ A+E+ LG EA+KN M +QPGDV +T A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  301  DTQPLYDLVGFKPQTSVKDGVKNFVEWYKDYYR  333
            + + L+  ++FKP+T+++DGV++FV+WY +YY+
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

126) Pat9b_2181 in NC_014837


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  357 bits (1340),  Expect = 5e-100, Method: Compositional matrix adjust.
 Identities = 193/335 (58%), Positives = 270/335 (81%), Gaps = 1/335 (0%)

Query  1    MKFLVTGAAGFIGFHVSQRLLAAGHQVVGIDNLNDYYDVSLKQARLDQIAQHPAFSFSKM  60
            MK+L+TG+AGFIG H++++L+  GH V+G+D++NDYY VSLK+ RL  I+++  F+F+K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKV  59

Query  61   DLADRQAISSLFEQHGFDRVIHLGAQAGVRYSIENPHAYADANLIGHLNILEGCRHHKIG  120
             L + + +S +F ++  + V++L+AQAGVRYSIENP++Y D+N++G +NILE  RH +I 
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMSHTYSHLYQLPTTGLRFF  180
            +L+YASSSSVYG N   PFST D++DHP+SLYAATKK+NELM+HTYSHLY+LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTRAMLAGERIDVYNNGQMKRDFTYIDDIAEAIVRLQDVIPQPDE  240
            TVYGPWGRPDMALFKFT+A++ ++ IDVYN+G+M RDFTY+DDI EAI RL    + P+ 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  HWTVETGTPATSSAPYRVYNIGNSQPVSLMDYIKALENALGIEANKNLMPMQPGDVLETS  300
            +W+     P++S APY+VYNIGN+ PV LM+++ A+EN LG EA KN M +QPGDV ET 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTQPLYDAINFRPQTSVADGVQEFVNWYREFYPQ  335
            A+ + L+  I+F+P+T++ DGV+ FV+WY E+Y +
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

127) SerAS12_2739 in NC_015566


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  357 bits (1340),  Expect = 5e-100, Method: Compositional matrix adjust.
 Identities = 191/334 (58%), Positives = 271/334 (82%), Gaps = 1/334 (0%)

Query  1    MKFLVTGAAGFIGYHVAERLLAAGHQVVGIDNLNDYYDVTLKMARLELLSDKSEFQFIKL  60
            MK+L+TG+AGFIG H+A +L+  GH V+G+D++NDYY V+LK  RL  ++ K +F F K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG-KENFTFNKV  59

Query  61   DLADREGMAGLFAEQKFQRVIHLGAQAGVRYSLENPLAYADANLIGHLNVLEGCRHNKVE  120
             L + ++++ +F +++ + V++L+AQAGVRYS+ENP +Y D+N++G +N+LE  RH +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLLYASSSSVYGLNRKLPFATEDSVDHPVSLYAATKKANELMSHSYSHLYGIPTTGLRFF  180
            +L+YASSSSVYG N   PF+T D++DHP+SLYAATKK+NELM+H+YSHLY +PTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTKAILAGENIDVYNHGEMHRDFTYIDDIAEAIVRLQAVIPQADA  240
            TVYGPWGRPDMALFKFTKAI+ ++ IDVYNHG+M RDFTY+DDI EAI RL    + ++ 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  AWTVEQGSPASSSAPYRVYNIGNSSPVKLMEYIRALEQALGIEARKNMLPMQPGDVLDTS  300
             W+  +  P+SS APY+VYNIGN+SPV+LME++ A+E+ LG EARKN + +QPGDV +T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTAELYRVIGFKPETGVEEGVKRFVEWYKSFYK  334
            A+  +L+R I+FKPET +++GV++FV+WY  +YK
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

128) SerAS13_2740 in NC_017573


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  357 bits (1340),  Expect = 5e-100, Method: Compositional matrix adjust.
 Identities = 191/334 (58%), Positives = 271/334 (82%), Gaps = 1/334 (0%)

Query  1    MKFLVTGAAGFIGYHVAERLLAAGHQVVGIDNLNDYYDVTLKMARLELLSDKSEFQFIKL  60
            MK+L+TG+AGFIG H+A +L+  GH V+G+D++NDYY V+LK  RL  ++ K +F F K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG-KENFTFNKV  59

Query  61   DLADREGMAGLFAEQKFQRVIHLGAQAGVRYSLENPLAYADANLIGHLNVLEGCRHNKVE  120
             L + ++++ +F +++ + V++L+AQAGVRYS+ENP +Y D+N++G +N+LE  RH +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLLYASSSSVYGLNRKLPFATEDSVDHPVSLYAATKKANELMSHSYSHLYGIPTTGLRFF  180
            +L+YASSSSVYG N   PF+T D++DHP+SLYAATKK+NELM+H+YSHLY +PTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTKAILAGENIDVYNHGEMHRDFTYIDDIAEAIVRLQAVIPQADA  240
            TVYGPWGRPDMALFKFTKAI+ ++ IDVYNHG+M RDFTY+DDI EAI RL    + ++ 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  AWTVEQGSPASSSAPYRVYNIGNSSPVKLMEYIRALEQALGIEARKNMLPMQPGDVLDTS  300
             W+  +  P+SS APY+VYNIGN+SPV+LME++ A+E+ LG EARKN + +QPGDV +T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTAELYRVIGFKPETGVEEGVKRFVEWYKSFYK  334
            A+  +L+R I+FKPET +++GV++FV+WY  +YK
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

129) SerAS9_2738 in NC_015567


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  357 bits (1340),  Expect = 5e-100, Method: Compositional matrix adjust.
 Identities = 191/334 (58%), Positives = 271/334 (82%), Gaps = 1/334 (0%)

Query  1    MKFLVTGAAGFIGYHVAERLLAAGHQVVGIDNLNDYYDVTLKMARLELLSDKSEFQFIKL  60
            MK+L+TG+AGFIG H+A +L+  GH V+G+D++NDYY V+LK  RL  ++ K +F F K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG-KENFTFNKV  59

Query  61   DLADREGMAGLFAEQKFQRVIHLGAQAGVRYSLENPLAYADANLIGHLNVLEGCRHNKVE  120
             L + ++++ +F +++ + V++L+AQAGVRYS+ENP +Y D+N++G +N+LE  RH +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLLYASSSSVYGLNRKLPFATEDSVDHPVSLYAATKKANELMSHSYSHLYGIPTTGLRFF  180
            +L+YASSSSVYG N   PF+T D++DHP+SLYAATKK+NELM+H+YSHLY +PTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTKAILAGENIDVYNHGEMHRDFTYIDDIAEAIVRLQAVIPQADA  240
            TVYGPWGRPDMALFKFTKAI+ ++ IDVYNHG+M RDFTY+DDI EAI RL    + ++ 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  AWTVEQGSPASSSAPYRVYNIGNSSPVKLMEYIRALEQALGIEARKNMLPMQPGDVLDTS  300
             W+  +  P+SS APY+VYNIGN+SPV+LME++ A+E+ LG EARKN + +QPGDV +T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTAELYRVIGFKPETGVEEGVKRFVEWYKSFYK  334
            A+  +L+R I+FKPET +++GV++FV+WY  +YK
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

130) Abu_0660 in NC_009850


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  357 bits (1340),  Expect = 6e-100, Method: Compositional matrix adjust.
 Identities = 206/353 (59%), Positives = 280/353 (80%), Gaps = 21/353 (5%)

Query  1    MKILVTGTAGFIGSHLAIKLLERGDEVVGLDNINDYYDQNVKYGRLQRTGIINNIEDGKN  60
            MKIL+TGTAGFIGSHLA KL+ +G+ V+G+D+INDYY  ++K +RL+             
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLK-------------  47

Query  61   IPYGKLITSITNPKYKFIKINLEDKNSMMKLFETEKFDAVCNLAAQAGVRYSLTNPDAYM  120
                    SI + ++ F K++LE+ + + K+F  E+ + V NLAAQAGVRYS+ NP +Y+
Sbjct  48   --------SIGKENFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYI  99

Query  121  DSNIIGFMNILEACRHNNVKNLSYASSSSVYGLNEELPFSTNHNVDHPISLYAASKKSNE  180
            DSNI+GFMNILE  RH N++NL YASSSSVYG N   PFST++N+DHP+SLYAA+KKSNE
Sbjct  100  DSNIVGFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNE  159

Query  181  LMAHTYSHLFGISTTGLRFFTVYGPWGRPDMALFLFTKAALEGNKIDVFNNGEMLRDFTY  240
            LMAHTYSHL+ ++TTGLRFFTVYGPWGRPDMALF FTKA ++++ IDV+N+G+M+RDFTY
Sbjct  160  LMAHTYSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTY  219

Query  241  IDDIVEGVIRVIDNPAKSDKNWNGKTGETSTSSAPYKIYNIGNNNPVKLMDFINAIENKL  300
            +DDIVE++ R++ +PA ++K+W+G   + ++S APYK+YNIGNN+PV+LM+F++AIENKL
Sbjct  220  VDDIVEAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKL  279

Query  301  GKIIEKNMMPIQAGDVPATYADVSDLVENLGYKPATPIQKGVDNFVDWYLEFF  353
            GK   KN M +Q+GDVP TYA+V DL  ++++KP T IQ GV++FVDWYLE++
Sbjct  280  GKEARKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

131) M621_13905 in NC_021659


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  356 bits (1336),  Expect = 1e-99, Method: Compositional matrix adjust.
 Identities = 189/334 (57%), Positives = 272/334 (82%), Gaps = 1/334 (0%)

Query  1    MKFLVTGAAGFIGYHIAERLLAAGHQVVGIDNLNDYYDVGLKMARLELLSDKSEFQFIKL  60
            MK+L+TG+AGFIG H+A +L+  GH V+G+D++NDYY V+LK  RL  ++ K +F F K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG-KENFTFNKV  59

Query  61   DLADREGMAGLFAEQKFQRVIHLGAQAGVRYSLENPLAYADANLIGHLNVLEGCRHNKVE  120
             L + ++++ +F +++ + V++L+AQAGVRYS+ENP +Y D+N++G +N+LE  RH +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLLYASSSSVYGLNRKLPFATEDSVDHPVSLYAATKKANELMSHSYSHLYGIPTTGLRFF  180
            +L+YASSSSVYG N   PF+T D++DHP+SLYAATKK+NELM+H+YSHLY +PTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTKAILAGESIDVYNHGEMHRDFTYIDDIAEAIVRLQAVIPQADA  240
            TVYGPWGRPDMALFKFTKAI+ +++IDVYNHG+M RDFTY+DDI EAI RL    + ++ 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  AWTVEQGSPATSSAPYRVYNIGNSSSVKLMEYIRALEQALGIEARKNMLPMQPGDVLDTS  300
             W+  +  P++S APY+VYNIGN+S+V+LME++ A+E+ LG EARKN + +QPGDV +T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTAELYRVIGFKPETGVEEGVKRFVEWYKSFYK  334
            A+  +L+R I+FKPET +++GV++FV+WY  +YK
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

132) SG1369 in NC_007712


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  356 bits (1336),  Expect = 1e-99, Method: Compositional matrix adjust.
 Identities = 190/335 (57%), Positives = 271/335 (81%), Gaps = 1/335 (0%)

Query  1    MKFLVTGAAGFIGYHVSGRLLADGHQVVGIDNLSDYYDVSLKQARLDGLQAVKTFRFQKL  60
            MK+L+TG+AGFIG H++ +L+ +GH V+G+D+++DYY VSLK+ RL ++ +   F F+K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  61   DLADQQGIASLFASERFTRVIHLGAQAGVRYSLENPLAYGDANLIGHLNILEGCRHNQVQ  120
             L + ++++ +F  E+   V++L+AQAGVRYS+ENP +Y D+N++G +NILE  RH ++Q
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLLYASSSSVYGLNRKLPFSMDDTVDHPVSLYAATKKANELMAHTYAHLYQLPTTGLRFF  180
            +L+YASSSSVYG N   PFS  D +DHP+SLYAATKK+NELMAHTY+HLY+LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTRAMLNGERIDVYNGGEMLRDFTYIDDIVEAIVRLQDVIPVPDA  240
            TVYGPWGRPDMALFKFT+A++N++ IDVYN G+M+RDFTY+DDIVEAI RL    + P+ 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  GWTVETGSPAASSAPYRVYNIGNSQPVKLMDYIEALEDALGIQAEKNLLPMQPGDVLETS  300
             W+     P++S APY+VYNIGN+ PV+LM+++EA+E+ LG +A KN + +QPGDV ET 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTQELYRAIGFKPQTPVTEGVKRFVKWYRDYYQR  335
            A+ ++L+R I+FKP+T + +GV++FV WY +YY++
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

133) Dde_0033 in NC_007519


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  356 bits (1338),  Expect = 7e-100, Method: Compositional matrix adjust.
 Identities = 205/335 (62%), Positives = 269/335 (81%), Gaps = 1/335 (0%)

Query  1    MHILVTGAAGFIGFHLSRRFLAEGHTVVGLDCLNDYYDVQLKKDRLALLQQEKGFTFTPT  60
            M IL+TG+AGFIG HL+++++ +GH V+G+D +NDYY V LK DRL  + +E+ FTF   
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKEN-FTFNKV  59

Query  61   dladdaamdalFAREQFTHVVNLAAQAGVRYSIENPRSYIQSNLVGFGNIIEGCRHNGVK  120
             L +   +  +F  EQ   VVNLAAQAGVRYSIENPR+YI+SN+VGF NI+E  RH  ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGLNTNMPFSVHDNVDHPISLYAASKKANELMAHTYSHLYRLPTTGLRFF  180
            +L+YASSSSVYG NT+ PFS  DN+DHP+SLYAA+KK+NELMAHTYSHLY LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFLFTKAILEGKPINVFNEGHMRRDFTYIDDIIEGVVRVTMRTPEPNP  240
            TVYGPWGRPDMALF FTKAI+++++I+V+N+G+M RDFTY+DDI+E++ R+  + + PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  QWDGTAPDPSSSPAPYRIYNIGNNNTVELGEFIATLEECLGKKAVKNMMPMQPGDVEATY  300
            +W G+ PDP+SS APY++YNIGNN+ V L EF+ ++E+ LGK A KN M +QPGDV  TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ANVDDLIADTGFKPGTPLKEGIANFVSWYREYYKK  335
            ANVDDL+ D +FKP T +++G+ +FV WY EYYKK
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

134) HCH_04902 in NC_007645


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  356 bits (1339),  Expect = 7e-100, Method: Compositional matrix adjust.
 Identities = 197/334 (59%), Positives = 272/334 (82%), Gaps = 1/334 (0%)

Query  1    MKVLVTGTAGFIGSHVALRLLDRGDEVIGVDNLNDYYEVSLKEARLARLTPYKGFTDVRL  60
            MK+L+TGTAGFIGSH+A +L+ +G+ VIGVD++NDYY VSLKE RL  +     FT  ++
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DVADREGIEALFAKHKPDRVVHLAAQAGVRYSIENPHAYVSANLVGHMNILEGCRHNKVD  120
             + + +++  +F  ++P+ VV+LAAQAGVRYSIENP++Y+ +N+VG MNILE  RH +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGANESMPFSVHDNVDHPLSLYAATKKSNELMSHTYSSLYGIPTTGLRFF  180
            +L+YASSSSVYGAN S PFS  DN+DHPLSLYAATKKSNELM+HTYS LY +PTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFIFTRKIIAGEPIDVFNYGKHKRDFTYIDDIVEGIIRTLDHVAPSNP  240
            TVYGPWGRPDMALF FT+ I+ +++IDV+N G+  RDFTY+DDIVE+I R +   A++N 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWDGMQPDPGTSKAPYRIYNIGSNNPVELSRYIEILEECLGKKAERNLLPMQPGDVPATY  300
            +W G +PDPG+S APY++YNIG+N+PV L  ++E +E+ LGK A +N + +QPGDVP TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADVQALIDDVGYRPSTTVEEGVKKFVEWYRDYYR  334
            A+V+ L+ D++++P TT+++GV+KFV+WY +YY+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

135) Arnit_2572 in NC_014166


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  356 bits (1338),  Expect = 8e-100, Method: Compositional matrix adjust.
 Identities = 208/353 (59%), Positives = 281/353 (80%), Gaps = 23/353 (6%)

Query  19   KILVTGTAGFIGSHLAIKLLGRGDEVVGLDNINDYYDQNVKYGRLQRTGIIDSLEDGKKI  78
            KIL+TGTAGFIGSHLA KL+ +G+ V+G+D+INDYY  ++K +RL+  G           
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG-----------  50

Query  79   PYGKIIISRIDSNYKFIKLNLEDKEAMMQLFEQEKFDAVCNLAAQAGVRYSLTNPAAYMD  138
                        N+ F K++LE+ + + ++F +E+ + V NLAAQAGVRYS+ NP +Y+D
Sbjct  51   ----------KENFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYID  100

Query  139  SNIIGFMNILESCRHNNVKNLSYASSSSVYGLNEELPFSTNHNVDHPISLYAASKKSNEL  198
            SNI+GFMNILE  RH N++NL YASSSSVYG N   PFST++N+DHP+SLYAA+KKSNEL
Sbjct  101  SNIVGFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNEL  160

Query  199  MAHTYSHLFDISTTGLRFFTVYGPWGRPDMALFLFTKAALEGKSIDVFNNGNMLRDFTYV  258
            MAHTYSHL++++TTGLRFFTVYGPWGRPDMALF FTKA +++++IDV+N+GNM+RDFTYV
Sbjct  161  MAHTYSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYV  220

Query  259  DDIVEGVIRVIDNPAKANKSWDKKEPSTSS--APYKIYNIGNNNPVKLMDFIEAIENKLG  316
            DDIVE++ R++ +PA +NK W   +P  +S  APYK+YNIGNN+PV+LM+F+EAIENKLG
Sbjct  221  DDIVEAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLG  280

Query  317  KKIEKNMLPIQAGDVPATYADVTDLVEDLNYKPETSIQEGINNFIDWYLEFFN  369
            K   KN + +Q+GDVP TYA+V DL  D+++KPET+IQ+G+N+F+DWYLE+++
Sbjct  281  KEARKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

136) Glaag_3197 in NC_015497


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  356 bits (1337),  Expect = 8e-100, Method: Compositional matrix adjust.
 Identities = 196/337 (59%), Positives = 273/337 (82%), Gaps = 4/337 (1%)

Query  1    MKVLVTGAAGFIGYHVCQVLLTRGDEVVGIDNINDYYDVNLKHGRLNELAAHSNSKNFNF  60
            MK+L+TG+AGFIG H+ + L+ +G+ V+G+D+INDYY V+LK++RL+ ++ +    NF F
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE----NFTF  56

Query  61   IKLDIAQRSEMEALFAEHKFDKVVHLAAQAGVRYSIENPHAYIDSNIVGFTNILEGCRHN  120
             K+ + +  ++  +F +++ + VV+LAAQAGVRYSIENP++YIDSNIVGF NILE  RH 
Sbjct  57   NKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHF  116

Query  121  AVQHLVYASSSSVYGANESMPFSVSDNVDHPVSLYAASKKANELMAHTYSHLYDLPTTGL  180
             +Q+L+YASSSSVYGAN S PFS SDN+DHP+SLYAA+KK+NELMAHTYSHLY+LPTTGL
Sbjct  117  NIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGL  176

Query  181  RFFTVYGPWGRPDMALFKFTKAILEDDPIQVYNFGNHRRDFTYIDDIVSGVISTLDHNAQ  240
            RFFTVYGPWGRPDMALFKFTKAI++D++I+VYN GN  RDFTY+DDIV ++   +   A 
Sbjct  177  RFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPAS  236

Query  241  RNSQWQGKTPDPSSSKAPWRVYNIGAQTPVNLLDFITTLEAALGKEAVKELLPMQPGDVP  300
             N +W G  PDP+SS AP +VYNIG ++PV L++F+ ++E  LGKEA K+ + +QPGDVP
Sbjct  237  PNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVP  296

Query  301  DTFANVQALVDDVGYQPTTQLKEGITNFVNWYKDFYN  337
            +T+ANV+ L  D++++P T +++G+ +FV+WY ++Y+
Sbjct  297  ETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

137) Daro_3930 in NC_007298


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  355 bits (1334),  Expect = 1e-99, Method: Compositional matrix adjust.
 Identities = 202/335 (61%), Positives = 275/335 (83%), Gaps = 3/335 (0%)

Query  1    MKILVTGAAGFIGMTTSLRLLARGDEVVGLDNMNDYYEVSLKENRLKRLTALPGFRFVKL  60
            MKIL+TG+AGFIG   + +L+ +G+ V+G+D++NDYY VSLKE+RLK +     F F K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DVGDRAGMEKLFADEKFDKVIHLAAQAGVRYSIQNPHAYVDSNLVGFINILEGCRHHKVQ  120
             + +  ++ K+F DE+ + V++LAAQAGVRYSI+NP++Y+DSN+VGF+NILE  RH ++Q
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGGNTKMPFSEHDSVDHPVSLYAATKKANELMAHTYSHLYGLPTTGLRFF  180
            +L+YASSSSVYG+NT  PFS  D++DHP+SLYAATKK+NELMAHTYSHLY LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFLFTKAILEGRPIDVFNHGNMKRDFTYVDDIVEGVIRVMDRNAAANA  240
            TVYGPWGRPDMALF FTKAI+++++IDV+NHGNM RDFTYVDDIVE++ R++ + A++N 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  EYDSLSADPATSNAPYRVFNIGNNNPVQLLDFIGAIETALGQKAEKRLLPLQDGDVPATY  300
            E  +  +DP++S APY+V+NIGNN+PV+L++F+ AIE  LG+ A K  + LQ GDVP TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ANT-DLLNDWVGFVPGTSVQEGVSKFIAWYRDYYK  334
            AN  DL+ D ++F P T++Q+GV+KF+ WY +YYK
Sbjct  300  ANVDDLFRD-IDFKPETTIQDGVNKFVDWYLEYYK  333

138) D781_2450 in NC_020064


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  355 bits (1334),  Expect = 1e-99, Method: Compositional matrix adjust.
 Identities = 195/334 (59%), Positives = 268/334 (81%), Gaps = 1/334 (0%)

Query  1    MKFLVTGAAGFIGYHVAERLLTAGHQVVGIDNLNDYYDVSLKVARLDLLAGNPAFQFIKL  60
            MK+L+TG+AGFIG H+A +L+  GH V+G+D++NDYY VSLK  RL  + G+  F F K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  61   DLADREGIAALFAEHQFQRVIHLGAQAGVRYSLDNPMAYADSNLIGHLNVLEGCRHNKVE  120
             L + ++++ +F ++Q + V++L+AQAGVRYS++NP +Y DSN++G +N+LE  RH +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLLYASSSSVYGLNRKLPFSTEDSVDHPVSLYAATKKANELMSHSYSHLYGLPTTGLRFF  180
            +L+YASSSSVYG N   PFST D++DHP+SLYAATKK+NELM+H+YSHLY LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTKAILAGDSIDVYNHGEMHRDFTYIDDIAEAIVRLQDIIPQPNP  240
            TVYGPWGRPDMALFKFTKAI+ +++IDVYNHG+M RDFTY+DDI EAI RL    + PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  EWSVEQGSPATSSAPYHVYNIGNSSPVKLMEYISALENALGITAQKNMLPMQPGDVLDTS  300
            EWS  +  P++S APY VYNIGN+SPV+LME++ A+EN LG  A+KN + +QPGDV +T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTRELYSTIGFRPTTSVDDGVKRFVDWYKAFYH  334
            A+  +L+  I+F+P T+++DGV++FVDWY  +Y 
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

139) DGI_0864 in NC_022444


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  355 bits (1334),  Expect = 1e-99, Method: Compositional matrix adjust.
 Identities = 190/335 (57%), Positives = 267/335 (80%), Gaps = 1/335 (0%)

Query  1    MRICITGAAGFIGYHLSEYYASRGIAVVGVDNLNDYYDVRLKQARLDQLARHASFTFCKL  60
            M+I ITG+AGFIG HL+     +G  V+GVD++NDYY V LK+ RL  ++++ +FTF K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKV  59

Query  61   DLADKAAVQALFAEHRFTHVMNLAAQAGVRYSLINPDAYIASNIVGFHHLLECCRTFPVE  120
             L +   +  +F +++   V+NLAAQAGVRYS+ NP +YI SNIVGF ++LEC R F ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGLNTRMPFSVHDNVDHPVSLYAASKKSNELMAHAYSHLYAIPTTGLRFF  180
            +L+YASSSSVYG NT  PFS  DN+DHP+SLYAA+KKSNELMAH+YSHLY +PTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFLFTKAMLAGEPIKVFNQGNMQRDFTYIDDIIEGVVRVLAAPPAANP  240
            TVYGPWGRPDMALF FTKA++ +++I V+N+GNM RDFTY+DDI+E++ R++  P+++N 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  QWNGEDPDPGSSPAPYRIFNIGNNNSVRLMDFIQVLEQALGLEARKEFLPMQPGDVPATF  300
            +W+G DPDPGSS APY+++NIGNN++VRLM+F++ +E+ LG EARK+++ +QPGDVP T+
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADIDALQTAVGFRPCTPLEVGIPRFVAWYTGHYGR  335
            A++D L   ++F+P T ++ G+ +FV WY   Y +
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

140) MARHY1608 in NC_017067


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  355 bits (1332),  Expect = 2e-99, Method: Compositional matrix adjust.
 Identities = 195/315 (62%), Positives = 264/315 (84%), Gaps = 1/315 (0%)

Query  1    MLDRGDEVIGVDNVNDYYDVNLKEARLARLLNKPGFTEVRQDVADREAMEAVFREHKPER  60
            ++ +G+ VIGVD++NDYY V+LKE RL + + K  FT  +  + + + +  VF +++PE 
Sbjct  20   LIKQGHYVIGVDSINDYYSVSLKEDRL-KSIGKENFTFNKVKLENYDDLSKVFVDEQPEV  78

Query  61   VVHLAAQAGVRYSLENPHAYVDANLVGFMNILEGCRHNEVKHLVYASSSSVYGANESMPF  120
            VV+LAAQAGVRYS+ENP++Y+D+N+VGFMNILE  RH ++++L+YASSSSVYGAN S PF
Sbjct  79   VVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNLIYASSSSVYGANTSKPF  138

Query  121  SVHDNVDHPLSLYAASKKANELMAHTYSHLYNLPTTGLRFFTVYGPWGRPDMALFIFTKK  180
            S  DN+DHPLSLYAA+KK+NELMAHTYSHLYNLPTTGLRFFTVYGPWGRPDMALF FTK 
Sbjct  139  STSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKA  198

Query  181  ILAGEPIDVFNHGHHKRDFTYIDDIVEGVIRTLDNVAQPNQDWSGAQPDPGTSKGPYRIY  240
            I+ +++IDV+NHG+  RDFTY+DDIVE++ R + + A PN++WSGA+PDPG+S +PY++Y
Sbjct  199  IVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEWSGADPDPGSSYAPYKVY  258

Query  241  NIGSNNPVELSRFIEIIEERVGKKAEKNLLPLQPGDVPATYANVDDLINDVGYKPSTTVE  300
            NIG+N+PV L  F+E IE+++GK A KN + LQPGDVP TYANVDDL+ D+++KP TT++
Sbjct  259  NIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQ  318

Query  301  EGIANFVDWYRDFYN  315
            +G+ +FVDWY ++Y+
Sbjct  319  DGVNKFVDWYLEYYK  333

141) Dole_2324 in NC_009943


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  355 bits (1333),  Expect = 2e-99, Method: Compositional matrix adjust.
 Identities = 198/333 (60%), Positives = 268/333 (81%), Gaps = 1/333 (0%)

Query  1    MNILVTGAAGFIGFHLAKRLCEDGHTVVGVDNINDYYDPGLKNARLALLHPFSNFSFFQI  60
            M+IL+TG+AGFIG HLAK+L  +GH V+GVD+INDYY  +LK+ RL  +    NF+F ++
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DIADRPFMAKLFTSHKFDCVVHLAAQAGVRYSLEHPETYIDSNLVGFGNILEGCRHAKVK  120
             + +   ++K+F  ++ + VV+LAAQAGVRYS+E+P TYIDSN+VGF NILE  RH +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGLNTTMPFSVFHNVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFF  180
            +L+YASSSSVYG NT+ PFS  +N+DHP+SLYAATKK+NELMAHTYSHLY LP+TGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMAYFLFTRAILEGTPIKVYNQGNMKRDFTYIDDIVEGVVRVMDRVPAPDP  240
            TVYGPWGRPDMA F FT+AI+++ +I VYN+GNM RDFTY+DDIVE++ R++ + ++P+ 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  EWSPEAPCPATSRAPYRLYNIGNNQPVSLMGFIEAIEKALGKKAEKTFLPMQPGDVPATW  300
            EWS   P P++S APY++YNIGNN PV LM F+EAIE+ LGK A K ++ +QPGDVP T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADIDSLRQATGFSPATSLENGIAKFVAWYLDYY  333
            A++D L +  +F P T++++G+ KFV WYL+YY
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

142) wcaG in NC_006513


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  355 bits (1332),  Expect = 2e-99, Method: Compositional matrix adjust.
 Identities = 195/335 (59%), Positives = 268/335 (80%), Gaps = 1/335 (0%)

Query  1    MKVLITGAAGFIGMHVCQVLLARGDEVVGLDNLNDYYDPRLKEDRLARLAPHPRFRFIKL  60
            MK+LITG+AGFIG H+ + L+ +G+ V+G+D++NDYY   LKEDRL  ++ +  F F K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKV  59

Query  61   DVADRDAMERLFAAERFERVVHLAAQAGVRYSLQNPHAYVDSNLVGFMNVLEGCRHGGVR  120
             + + D + ++F  E+ E VV+LAAQAGVRYS++NP++Y+DSN+VGFMN+LE  RH  ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGGNTKMPFSEHDSVDHPVSIYAATKKANELMAHTYSHLYGLPTTGLRFF  180
            +L+YASSSSVYG+NT  PFS  D++DHP+S+YAATKK+NELMAHTYSHLY LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFLFTRAILEGRPIDVFNHGRMMRDFTYIDDIVEGVVRTLDRVAEPDP  240
            TVYGPWGRPDMALF FT+AI+++++IDV+NHG MMRDFTY+DDIVE++ R + + A P+ 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  GFDALQPDPARSNAPYRVFNIGNHDPVELMAFIEAIEDAIGRKAEKNFLPLQDGDVPATY  300
               + +PDP+ S APY+V+NIGN+ PV LM F+EAIE+ +G+ A KN++ LQ GDVP TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTAELNAWTGFKPGTSVRDGVGQFVAWYRDYYRS  335
            A+  +L    +FKP T+++DGV +FV WY +YY+ 
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

143) Eab7_2411 in NC_018665


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  355 bits (1334),  Expect = 2e-99, Method: Compositional matrix adjust.
 Identities = 191/332 (58%), Positives = 264/332 (80%), Gaps = 0/332 (0%)

Query  5    TILITGIAGFIGFHAARRFLAEGYRVVGLDEVNDYYDPTLKEARLIELDPKRYTFYRVSL  64
             ILITG AGFIG H A++++ +G  V+G+D +NDYY  +LKE RL  ++   +TF +V L
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVKL  61

Query  65   EDTEAVDQIFATEQIDLVLHLAAQAGVRYSIDRPDVYITSNIVGFLSILEACRHHPVEQL  124
            E+ + + ++F  EQ ++V++LAAQAGVRYSI+ P  YI SNIVGF++ILE  RH  +++L
Sbjct  62   ENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNL  121

Query  125  IYASSSSVYGSNTKMPFATTDAVDHPLSLYAASKKANELMAHTYSSLYGIKTTGLRFFSV  184
            IYASSSSVYG+NT  PF+T+D +DHPLSLYAA+KK+NELMAHTYS LY + TTGLRFF+V
Sbjct  122  IYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTV  181

Query  185  YGPWGRPDMALFKFTEAIANGQPIDLYNYGEMGRDFTYVDDIIESIYRLMQTEPVADPRF  244
            YGPWGRPDMALFKFT AI N+Q+ID+YN G+M RDFTYVDDI+E+I RL++  + ++   
Sbjct  182  YGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEW  241

Query  245  DKANPRPDRSFVPYRVFNIGSHSPIRLNEFVALIEQRLGKKAIKHELPLQAGDVPESFAD  304
              A+P P+ S+ PY+V+NIG++SP+RL EFV  IE++LGK A K+ + LQ+GDVPE++A+
Sbjct  242  SGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYAN  301

Query  305  VESLFETIGYRPQTTIEAGVHAFIDWYEQHYR  336
            V+ LF  I+++P+TTI+ GV+ F+DWY + Y+
Sbjct  302  VDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

144) Exig_2571 in NC_010556


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  355 bits (1333),  Expect = 2e-99, Method: Compositional matrix adjust.
 Identities = 192/332 (58%), Positives = 264/332 (80%), Gaps = 0/332 (0%)

Query  5    TILITGIAGFIGFHAARRFMAEGYRVIGLDEVNDYYDPTLKEARLMELDPNRYTFYRVSL  64
             ILITG AGFIG H A++++ +G  VIG+D +NDYY  +LKE RL  ++ + +TF +V L
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVKL  61

Query  65   EDATAINRIFETEQIDLVLHLAAQAGVRYSIDRPDVYITSNIVGFLSILEACRHHPVEQL  124
            E+   ++++F  EQ ++V++LAAQAGVRYSI+ P  YI SNIVGF++ILE  RH  +++L
Sbjct  62   ENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNL  121

Query  125  IYASSSSVYGSNTKMPFATTDAVDHPLSLYAASKKANELMAHTYSSLYGIKTTGLRFFSV  184
            IYASSSSVYG+NT  PF+T+D +DHPLSLYAA+KK+NELMAHTYS LY + TTGLRFF+V
Sbjct  122  IYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTV  181

Query  185  YGPWGRPDMALFKFTEAIANGQPIDLYNYGEMGRDFTYVDDIIESIYRLMQTEPAADPAF  244
            YGPWGRPDMALFKFT AI N+Q+ID+YN G+M RDFTYVDDI+E+I RL++  ++++   
Sbjct  182  YGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEW  241

Query  245  DQENPLPDRSNVPYRVFNIGSHSPIRLNEFVSLIEERLGKKAIKHEMPLQAGDVPESFAD  304
               +P P+ S  PY+V+NIG++SP+RL EFV  IE++LGK A K+ M LQ+GDVPE++A+
Sbjct  242  SGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYAN  301

Query  305  VESLFETIGYRPQTTIEAGVHAFIDWYEQHYR  336
            V+ LF  I+++P+TTI+ GV+ F+DWY + Y+
Sbjct  302  VDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

145) RORB6_02135 in NC_021066


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  355 bits (1334),  Expect = 2e-99, Method: Compositional matrix adjust.
 Identities = 191/333 (58%), Positives = 272/333 (82%), Gaps = 0/333 (0%)

Query  1    MKFLVTGAAGFIGFHASQRLLEAGHEVVGIDNMNDYYDVNLKQSRLDLLQSPRFSFYKID  60
            MK+L+TG+AGFIG H +++L+  GH V+G+D++NDYY V+LK+ RL  +    F+F K+ 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  61   LADREGMAQIFATEKFDRVIHLAAQAGVRYSLENPHAYADANLIGYLNILEGCRHNKVQH  120
            L + ++++++F  E+ + V++LAAQAGVRYS+ENP++Y D+N++G++NILE  RH ++Q+
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  121  LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGIPTTGLRFFT  180
            L+YASSSSVYG N   PFST D++DHP+SLYAATKK+NELMAHTYSHLY +PTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  181  VYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIVEAIVRVQDVIPQADPE  240
            VYGPWGRPDMALFKFTKA++++++IDVYN G+M RDFTY+DDIVEAI R+    + ++ E
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  241  WTVENGSPATSSAPYRIYNIGNSSPVELMDYITALEEAMGMEAEKNMMPIQPGDVLETSA  300
            W+  +  P++S APY++YNIGN+SPV LM+++ A+E+ +G EA KN M +QPGDV ET A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  301  DTKPLYDLVGFKPQTSVKDGVKKFVEWYKAYYN  333
            +   L+  ++FKP+T+++DGV+KFV+WY  YY+
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

146) PAGR_g2001 in NC_017554


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  355 bits (1332),  Expect = 2e-99, Method: Compositional matrix adjust.
 Identities = 188/334 (57%), Positives = 269/334 (81%), Gaps = 1/334 (0%)

Query  1    MNFLVTGAAGFIGFHVSQRLLAAGHQVVGLDNLNDYYDVNLKQARLDIIGDNPSFTFIKA  60
            M++L+TG+AGFIG H++++L+  GH V+G+D++NDYY V+LK+ RL  IG + +FTF K 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKV  59

Query  61   NLADRQAIATLFAQHNFQRVIHLAAQAGVRYSLENPHAYADANVIGHLNILEGCRHHKIE  120
            +L + + ++ +F +++ + V++LAAQAGVRYS+ENP++Y D+N++G +NILE  RH +I+
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLLYASSSSVYGLNNKMPFSTEDSVDHPVSLYAATKKANELMSHTYSHLYQLPTTGLRFF  180
            +L+YASSSSVYG N   PFST D++DHP+SLYAATKK+NELM+HTYSHLY+LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTRAMLAGEAIDVYNQGQMKRDFTYIDDVAEAVIRLQDVIPQANA  240
            TVYGPWGRPDMALFKFT+A++ ++AIDVYN+G+M RDFTY+DD+ EA+ RL    + +N 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWTVETGSAASSSAPYRIYNLGNSQPVSLIHYIEAIEKALGVKANKNLMPMQPGDVLATS  300
            +W+     ++SS APY++YN+GN+ PV L++++EAIE+ LG  A KN M +QPGDV  T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTTALFNTIGFKPQTGVDEGVRRFVDWYRNFYS  334
            A+   LF  I+FKP+T +++GV +FVDWY ++Y 
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

147) vfu_A00124 in NC_016602


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  354 bits (1331),  Expect = 2e-99, Method: Compositional matrix adjust.
 Identities = 192/332 (58%), Positives = 262/332 (79%), Gaps = 0/332 (0%)

Query  1    MKYLVTGAAGFIGSAVVEHLTEMGHEVVGIDNINDYYDISLKHARLDRIQHPLFKFIKMD  60
            MK L+TG+AGFIGS +   L   GH V+G+D+INDYY +SLK+ RL  I    F F K+ 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  61   IADREAIPELFANEQFDRVIHLAAQAGVRYSIDNPLAYADSNLVGHLNILEGCRHTKVKH  120
            + + + ++ +F +EQ + V++LAAQAGVRYSI+NP +Y DSN+VG +NILE  RH ++++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  121  LVYASSSSVYGLNGKVPFSTDDSVDHPISLYAATKKSNELMSHTYSHLYNIPTTGLRFFT  180
            L+YASSSSVYG N   PFST D++DHP+SLYAATKKSNELM+HTYSHLYN+PTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  181  VYGPWGRPDMALFKFTNKIVKGETIDIYNNGDMRRDFTYIDDIVEGIIRIQNVIPEKNSE  240
            VYGPWGRPDMALFKFT+ IV++++ID+YN+G+M RDFTY+DDIVE+I R+ +  +  N E
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  241  WTVEEGSPATSSAPYRVYNIGNGNPVKLMDYIQALEDSLGIEAKKNFMPMQPGDVYQTYA  300
            W+  +  P++S APY+VYNIGN +PV+LM++++A+E+ LG EA+KN+M +QPGDV +TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  301  DTTSLFEATGYKPEVDVRKGVTAFVEWYNGFY  332
            +   LF   ++KPE  ++ GV  FV+WY  +Y
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

148) DaAHT2_1792 in NC_014216


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  354 bits (1330),  Expect = 3e-99, Method: Compositional matrix adjust.
 Identities = 204/333 (62%), Positives = 272/333 (82%), Gaps = 1/333 (0%)

Query  1    MKVLITGAAGFIGSalalrllarGDEVVGIDNHNDYYDPSLKEARLARHADHPGYTHCRI  60
            MK+LITG+AGFIGS LA +L+ +G+ V+G+D+ NDYY  SLKE RL +  +   +T  ++
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRL-KSIGKENFTFNKV  59

Query  61   DLADKAAVQEVFAVHRPRRVVNLAAQAGVRYSIENPLSYIESNIVGFAHILENCRHHEIE  120
             L +   +  VF  ++P  VVNLAAQAGVRYSIENP +YI+SNIVGF +ILE  RH +I+
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGANTAMPFSVHHNVDHPLSVYAASKKSNELMAHTYSHLFGLPTTGLRFF  180
            +L+YASSSSVYGANT+ PFS  +N+DHPLS+YAA+KKSNELMAHTYSHL+ LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWDRPDMALAKFTRAIMADEPIKIFNYGKHRRDFTFIDDIIEGVVRVLDKPATPNP  240
            TVYGPW+RPDMAL KFT+AI+ D++I ++N G+  RDFT++DDI+E++ R++ KPA+PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  EWSGNNPDPGSSTAPWRVYNIGNNRQVELMEYVETLEKALGKTAQKEMLPLQPGDVPDTF  300
            EWSG +PDPGSS AP +VYNIGNN  V LME+VE++E+ LGK A+K+ + LQPGDVP+T+
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADVTDLARDFNYQPNTTVQEGIGRFAAWYREYY  333
            A+V DL RD++++P+TT+Q+G+ +F  WY EYY
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

149) DP2716 in NC_006138


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  354 bits (1330),  Expect = 3e-99, Method: Compositional matrix adjust.
 Identities = 196/333 (59%), Positives = 274/333 (83%), Gaps = 1/333 (0%)

Query  6    KVLVTGAAGFIGARLSGQLLAAGAEVVGLDNLNDYYDPQLKRDRMQTQAVGEGFTHLQLD  65
            K+L+TG+AGFIG++L+ +L+  G  V+G+D++NDYY   LK DR+++ +  E FT  ++ 
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG-KENFTFNKVK  60

Query  66   IADRGAMEKLFSDHSFDAVVNLAAQAGVRYSLKNPHSYVDSNIVGFVNLLEGCRHSGVKH  125
            + + + + K+F D+  + VVNLAAQAGVRYS+ NP++Y+DSNIVGF+N+LE  RH  +++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  126  FVYASSSSVYGANTNMPFSVHDNVDHPVSLYAASKKANELMAHAYSHLYGLPTTGLRFFT  185
            ++YASSSSVYGANT+ PFS  DN+DHP+SLYAA+KK+NELMAH+YSHLY LPTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  186  VYGPWGRPDMAPFLFTKAILEGRAIDVFNNGDMERDFTYIDDIVEGVCRVIEKQPEANPD  245
            VYGPWGRPDMA F FTKAI++++AIDV+N+G+M RDFTY+DDIVE++ R++ K + +N +
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  246  WSGQNPDPATSYCPYRVYNIGNNNKEKLLYFIELIEEALGKKAIKNFMPMQPGDVRATYA  305
            WSG +PDP++SY PY+VYNIGNN+  +L+ F+E IE+ LGK A KN+M +QPGDV  TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  306  NVDDLVRDFAYKPATSLRHGVQQFVAWFRDYYH  338
            NVDDL RD+ +KP T++++GV++FV W+ +YY 
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

150) KOX_25105 in NC_016612


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  354 bits (1330),  Expect = 3e-99, Method: Compositional matrix adjust.
 Identities = 194/333 (59%), Positives = 270/333 (82%), Gaps = 0/333 (0%)

Query  1    MKFLVTGAAGFIGFHTCKRLLEAGHEVVGLDNMNDYYDVNLKQARLDLLQSPLFSFHKID  60
            MK+L+TG+AGFIG H  K+L+  GH V+G+D++NDYY V+LK+ RL  +    F+F+K+ 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  61   LADREGIARLFANEKFNRVIHLAAQAGVRYSLENPFAYADANLIGYLNILEGCRHNNVEH  120
            L + ++++++F +E+ + V++LAAQAGVRYS+ENP +Y D+N++G++NILE  RH N+++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  121  LLYASSSSVYGLNRKMPFSTEDSVDHPVSLYAATKKANELMAHTYSHLYGIPTTGLRFFT  180
            L+YASSSSVYG N   PFST D++DHP+SLYAATKK+NELMAHTYSHLY +PTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  181  VYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIVEAVVRMLDIIPQPNPE  240
            VYGPWGRPDMALFKFTKA++++++IDVYN G+M RDFTY+DDIVEA+ R++   + PN E
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  241  WTVETGSPADSSAPYRVYNIGNSSPVELMDYITALEEALGMVAVKNMMPIQPGDVLETSA  300
            W+     P+ S APY+VYNIGN+SPV LM+++ A+E+ LG  A KN M +QPGDV ET A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  301  DTRPLYDAVGFRPQTTVRQGVKNFVDWYKAYYK  333
            +   L+  ++F+P+TT+++GV++FVDWY  YYK
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

151) Cphamn1_0966 in NC_010831


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  354 bits (1330),  Expect = 3e-99, Method: Compositional matrix adjust.
 Identities = 191/333 (58%), Positives = 273/333 (82%), Gaps = 1/333 (0%)

Query  1    MKVLVTGAAGFIGYTVSRRLLERGDEVVGIDNINNYYDPALKESRLDLLREYEKFRFVRL  60
            MK+L+TG+AGFIG  ++++L+ +G+ V+G+D+IN+YY  +LKE RL  +   E+F F ++
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DLADREGMEELFALEKFNRVVNLAAQAGVRYSIENPHSYVESNITGFLHVLEGCRQHHVE  120
             L + +++  +F  E+ + VVNLAAQAGVRYSIENP++Y++SNI GF+++LE  R+ +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGANETMPFSVHDNVDHPLSLYAASKKSNELMAHTYSHLYSMPTTGLRFF  180
            +L+YASSSSVYGAN + PFS  DN+DHPLSLYAA+KKSNELMAHTYSHLY++PTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFLFTRAILEGKPIKVFNYGKHRRDFTYIDDIAEGVLRTLDHIPVGNP  240
            TVYGPWGRPDMALF FT+AI+++++I V+N G+  RDFTY+DDI E++ R +   +  N 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWSGLNPDPGSSRAPWRVYNIGNSEPVELMDYISALEKSLGKTAEKEFLPLQPGDVPDTY  300
            +WSG +PDPGSS AP +VYNIGN+ PV LM+++ A+E+ LGK A K+++ LQPGDVP+TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADVAQLVQDVNYQPQTPVTEGIQKFVDWYREYY  333
            A+V +L +D++++P+T + +G++KFVDWY EYY
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

152) Thivi_2513 in NC_018012


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  354 bits (1330),  Expect = 3e-99, Method: Compositional matrix adjust.
 Identities = 191/334 (58%), Positives = 269/334 (81%), Gaps = 1/334 (0%)

Query  1    MKVLVTGSAGFIGSALSLRLLERGDEVIGIDNLNDYYDVGLKEARLARTLNYAGYRDLRA  60
            MK+L+TG+AGFIGS L+ +L+ +G+ VIG+D++NDYY V+LKE RL +++    +   + 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRL-KSIGKENFTFNKV  59

Query  61   DIEDGERLSEIFASFRPERVVNLAAQAGVRYSIDNPMAYVRTNLVGFANILEACRHHGVE  120
             +E+ + LS +F   +PE VVNLAAQAGVRYSI+NP +Y+ +N+VGF NILE  RH  ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGANTEMPFSVHHNVDHPLSLYAASKKANELMAHTYSHLYRIPTTGLRFF  180
            +L+YASSSSVYGANT  PFS  +N+DHPLSLYAA+KK+NELMAHTYSHLY +PTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTRAILAGEPIQVFNYGKHRRDFTFIDDIVEGVIRVLDRVPAGNP  240
            TVYGPWGRPDMALFKFT+AI+ +++I+V+N G+  RDFT++DDIVE++ R++ + ++ N 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWSGAEPDAATSQAPYRLYNIGNNQPVELMEYIGCLEDCLGKKAEMEMLPLQPGDVPDTF  300
            +WSGA+PD+++S APY++YNIGNN PV LME++  +E+ LGK A  + + LQPGDVP+T+
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADVSDLVRETGYMPSTPVAEGVARFVEWYRGFYR  334
            A+V DL R+ ++ P T + +GV +FV+WY  +Y+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

153) NT01EI_1313 in NC_012779


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  354 bits (1329),  Expect = 4e-99, Method: Compositional matrix adjust.
 Identities = 187/334 (56%), Positives = 266/334 (80%), Gaps = 1/334 (0%)

Query  1    MRVLVTGCAGFIGANLCGRLLAAGHQVEGIDNLNDYYDVSLKQARLAPLQADANFTYHPI  60
            M++L+TG AGFIG++L  +L+  GH V G+D++NDYY VSLK+ RL ++ +  NFT++ +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  61   DIADSEAMAALFSAAHFDRVVHLAAQAGVRYSLANPLSYAQSNLLGHVNVLEGCRHSNVG  120
             + + + ++ +F   + + VV+LAAQAGVRYS+ NP +Y +SN++G +N+LE  RH N+ 
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLIYASSSSVYGLNNKVPFSTADRVDHPISLYAATKKSNELMAHSYSHLYGLPTTGLRFF  180
            +LIYASSSSVYG N   PFST+D +DHP+SLYAATKKSNELMAH+YSHLY LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTKSMLEGKPIDIYNHGDMQRDFTYIDDIVEGVLRIMDVIPQPNA  240
            TVYGPWGRPDMALFKFTK+++++++ID+YNHG+M RDFTY+DDIVE++ R++   + PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  GWRVEQDSPAASSAPYRIYNIGHGSPVRLMDYITALEEALGIEAQKHFMPMQPGDVYQTY  300
             W   +  P++S APY++YNIG+ SPVRLM+++ A+E+ LG EA+K++M +QPGDV +TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTEDLFAVTGYRPQVGVKAGVQAFVDWYSLYYK  334
            A+ +DLF   +++P+  ++ GV+ FVDWY  YYK
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

154) PSE_3208 in NC_016642


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  354 bits (1329),  Expect = 4e-99, Method: Compositional matrix adjust.
 Identities = 176/333 (53%), Positives = 278/333 (84%), Gaps = 1/333 (0%)

Query  3    KVLVTGTAGFIGNAVALRLLQDGYHVIGLDCVTDYYDVTLKEERLKRLAASNHFTEERIR  62
            K+L+TGTAGFIG+ +A +L+++G  VIG+D + DYY V+LKE+RLK ++  ++FT ++++
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG-KENFTFNKVK  60

Query  63   LEDAEAVMRIFKQHVPSKVIHLAAQAGVRYSLESPQSYVDANVTGFLSILEGARAHSVKH  122
            LE+ + + ++F ++ P  V++LAAQAGVRYS+E+P++Y+D+N+ GF++ILE +R  ++++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  123  LVYASTSSVYGLDETMPLSTHRGGNHPVSFYAATKKANEAMAHSYAHLFDIPCTGLRFFT  182
            L+YAS+SSVYG + + P+ST    +HP+S+YAATKK+NE MAH+Y+HL+++P TGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  183  VYGPWGRPDMALFKFTKAILEGEPVPLFNHGNMIRDFTYVDDIVEGIVRIANLPPQRSDD  242
            VYGPWGRPDMALFKFTKAI++++++ ++NHGNM+RDFTYVDDIVE+I R+ + P+  + +
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  243  WDGKNADPATSSAPYQVFNIGNSDPVQLMDYLAAIEEALGMEAKKEFLPFQAGDVAATFA  302
            W G ++DP++S APY+V+NIGN+ PV+LM+++ AIE+ LG EA+K+++ +Q+GDV+ T+A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  303  DVTDLIETTGFKPQTSVKAGVANFVKWYRDYYN  335
            +V DL+   +FKP+T+++ GV +FV WY +YY+
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

155) Shal_1502 in NC_010334


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  353 bits (1327),  Expect = 5e-99, Method: Compositional matrix adjust.
 Identities = 199/335 (60%), Positives = 278/335 (83%), Gaps = 1/335 (0%)

Query  1    MKYLVTGAAGFIGSKVSERLCAAGHEVVGIDNINDYYDVNLKLDRLKNLQSQTLFSFKKL  60
            MK L+TG+AGFIGS ++ +L   GH V+G+D+INDYY V+LK DRLK++  +  F+F+K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKEN-FTFNKV  59

Query  61   DLADREGIATLFAEEGFDRVIHLAAQAGVRYSIDNPMAYADSNLVGHLTILEGCRHHKIQ  120
             L + ++++ +F +E  + V++LAAQAGVRYSI+NP +Y DSN+VG + ILE  RH +IQ
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGLNSKMPFSTDDSVDHPISLYAATKKANELMSHTYSHLYGVPTTGLRFF  180
            +L+YASSSSVYG N+  PFST D++DHP+SLYAATKK+NELM+HTYSHLY +PTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWSRPDMALLKFTNKIVKGEAIDVYNHGNLSRDFTYIDDIVEGIIRIQDSVPVANP  240
            TVYGPW+RPDMAL+KFT+ IV+++AIDVYNHGN+ RDFTY+DDIVE+I R+    + +N 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  EWNaaeatpatssapYRVFNIGNGSPVKLMDYISALEKSLGIEAIKNMMDMQPGDVHSTW  300
            EW++A++ P++S APY+V+NIGN SPV+LM+++ A+E+ LG EA KN MD+QPGDV  T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTEDLFKTVGYKPQTSVEEGVQKFVEWYKEYYLK  335
            A+ +DLF+ +++KP+T++++GV+KFV+WY EYY K
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

156) rfbB in NC_013956


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  353 bits (1327),  Expect = 5e-99, Method: Compositional matrix adjust.
 Identities = 188/334 (57%), Positives = 269/334 (81%), Gaps = 1/334 (0%)

Query  7    MNFLVTGAAGFIGFHVSQRLLAAGHQVVGLDNLNDYYDVNLKQARLDIIGDNPSFTFIKA  66
            M++L+TG+AGFIG H++++L+  GH V+G+D++NDYY V+LK+ RL  IG + +FTF K 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKV  59

Query  67   NLADRQAIATLFEQHNFQRVIHLAAQAGVRYSLENPHAYADANVIGHLNILEGCRHHKIE  126
            +L + + ++ +F +++ + V++LAAQAGVRYS+ENP++Y D+N++G +NILE  RH +I+
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  127  HLLYASSSSVYGLNNKMPFSTEDSVDHPVSLYAATKKANELMSHTYSHLYQLPTTGLRFF  186
            +L+YASSSSVYG N   PFST D++DHP+SLYAATKK+NELM+HTYSHLY+LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  187  TVYGPWGRPDMALFKFTRAMLAGEAIDVYNQGQMKRDFTYIDDVAEAVIRLQDVIPQADA  246
            TVYGPWGRPDMALFKFT+A++ ++AIDVYN+G+M RDFTY+DD+ EA+ RL    + ++ 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  247  DWTVETGSAASSSAPYRIYNLGNSQPVSLIHYIEAIEKALGVKANKNLMPMQPGDVLATS  306
            +W+     ++SS APY++YN+GN+ PV L++++EAIE+ LG  A KN M +QPGDV  T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  307  ADTTALFNTIGFKPQTGIDEGVRRFVDWYRNFYS  340
            A+   LF  I+FKP+T I++GV +FVDWY ++Y 
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

157) rfbB in NC_017531


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  353 bits (1327),  Expect = 5e-99, Method: Compositional matrix adjust.
 Identities = 187/334 (56%), Positives = 269/334 (81%), Gaps = 1/334 (0%)

Query  1    MNFLVTGAAGFIGFHVSQRLLAAGHQVVGLDNLNDYYDVNLKQARLDIIGDNPSFTFIKA  60
            M++L+TG+AGFIG H++++L+  GH V+G+D++NDYY V+LK+ RL  IG + +FTF K 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKV  59

Query  61   NLADRQAIATLFEQHNFQRVIHLAAQAGVRYSLENPHAYADANVIGHLNILEGCRHHKIE  120
            +L + + ++ +F +++ + V++LAAQAGVRYS+ENP++Y D+N++G +NILE  RH +I+
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLLYASSSSVYGLNNKMPFSTEDSVDHPVSLYAATKKANELMSHTYSHLYQLPTTGLRFF  180
            +L+YASSSSVYG N   PFST D++DHP+SLYAATKK+NELM+HTYSHLY+LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTRAMLAGEAIDVYNQGQMKRDFTYIDDVAEAVIRLQDVIPQADA  240
            TVYGPWGRPDMALFKFT+A++ ++AIDVYN+G+M RDFTY+DD+ EA+ RL    + ++ 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWTVETGSAASSSAPYRIYNLGNSQPVSLIHYIEAIEKALGVKANKNLMPMQPGDVLATS  300
            +W+     ++SS APY++YN+GN+ PV L++++EAIE+ LG  A KN M +QPGDV  T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTTALFNTIGFKPQTGVDEGVRRFVDWYRNFYS  334
            A+   LF  I+FKP+T +++GV +FVDWY ++Y 
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

158) rfbB in NC_016816


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  353 bits (1327),  Expect = 5e-99, Method: Compositional matrix adjust.
 Identities = 187/334 (56%), Positives = 269/334 (81%), Gaps = 1/334 (0%)

Query  1    MNFLVTGAAGFIGFHVSQRLLAAGHQVVGLDNLNDYYDVNLKQARLDIIGDNPSFTFIKA  60
            M++L+TG+AGFIG H++++L+  GH V+G+D++NDYY V+LK+ RL  IG + +FTF K 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKV  59

Query  61   NLADRQAIATLFEQHNFQRVIHLAAQAGVRYSLENPHAYADANVIGHLNILEGCRHHKIE  120
            +L + + ++ +F +++ + V++LAAQAGVRYS+ENP++Y D+N++G +NILE  RH +I+
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLLYASSSSVYGLNNKMPFSTEDSVDHPVSLYAATKKANELMSHTYSHLYQLPTTGLRFF  180
            +L+YASSSSVYG N   PFST D++DHP+SLYAATKK+NELM+HTYSHLY+LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTRAMLAGEAIDVYNQGQMKRDFTYIDDVAEAVIRLQDVIPQADA  240
            TVYGPWGRPDMALFKFT+A++ ++AIDVYN+G+M RDFTY+DD+ EA+ RL    + ++ 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWTVETGSAASSSAPYRIYNLGNSQPVSLIHYIEAIEKALGVKANKNLMPMQPGDVLATS  300
            +W+     ++SS APY++YN+GN+ PV L++++EAIE+ LG  A KN M +QPGDV  T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTTALFNTIGFKPQTGVDEGVRRFVDWYRNFYS  334
            A+   LF  I+FKP+T +++GV +FVDWY ++Y 
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

159) NIS_1416 in NC_009662


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  353 bits (1327),  Expect = 6e-99, Method: Compositional matrix adjust.
 Identities = 206/348 (60%), Positives = 274/348 (79%), Gaps = 16/348 (4%)

Query  1    MKILVTGTAGFIGFHLAKRLLGRGDEVVGIDNINDYYDVRVKYGRLKELGFEEEKFAFGK  60
            MKIL+TGTAGFIG HLAK+L+ +G+ V+G+D+INDYY V +K +RLK +G   E+F+F K
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG--KENFTFNK  58

Query  61   KYVSTKYPKHTFYRIDLADKTALEEVFQKENPQRVCHLAAQAGVRYSLTNPDAYIQSNFV  120
                          + L +   L  VF  E+P+ V +LAAQAGVRYS+ NP +YI+SN+V
Sbjct  59   --------------VKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIV  104

Query  121  GFANILECCRHHEVEHLAYASSSSVYGLNERMPFSVEDNVDHPISLYAASKKSNELMAHT  180
            GF NILEC RH ++++L YASSSSVYG N   PFS  DN+DHP+SLYAA+KKSNELMAHT
Sbjct  105  GFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHT  164

Query  181  YSHLFNIPTTGLRFFTVYGPWGRPDMALFLFTKAILEDKPIDVFNYGKMKRDFTYIDDIV  240
            YSHL+N+PTTGLRFFTVYGPWGRPDMALF FTKAI++D++IDV+N G+M RDFTY+DDIV
Sbjct  165  YSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIV  224

Query  241  EGVVRVIDNPPKSDPCWSARRPNPASSKAPYRVYNIGNGSPVELMDFIKAIEKTLGKEAK  300
            E++ R++ +P+ ++  WS+  P+P+SS APY+VYNIGN SPV LM+F+ AIE+ LGKEA+
Sbjct  225  EAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEAR  284

Query  301  KNLLPIQPGDVPATWADTYALEHDLGYKPSTPIEEGVKKFIEWYRNFY  348
            KN + +QPGDVP T A+   L +D+++KP T I++GV+KF++WY ++Y
Sbjct  285  KNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

160) A225_3875 in NC_018106


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  353 bits (1326),  Expect = 6e-99, Method: Compositional matrix adjust.
 Identities = 194/333 (59%), Positives = 268/333 (81%), Gaps = 0/333 (0%)

Query  1    MKFLVTGAAGFIGFHTCKRLLEAGHEVVGLDNMNDYYDVNLKQARLDLLPSPLFSFHKID  60
            MK+L+TG+AGFIG H  K+L+  GH V+G+D++NDYY V+LK+ RL  +    F+F+K+ 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  61   LADREGIARLFANEKFNRVIHLAAQAGVRYSLENPFAYADANLIGYLNILEGCRHNNVEH  120
            L + ++++++F +E+ + V++LAAQAGVRYS+ENP +Y D+N++G++NILE  RH N+++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  121  LLYASSSSVYGLNRKMPFSTEDSVDHPVSLYAATKKANELMAHTYSHLYGIPTTGLRFFT  180
            L+YASSSSVYG N   PFST D++DHP+SLYAATKK+NELMAHTYSHLY +PTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  181  VYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIVEAVVRMQDIIPQPNPE  240
            VYGPWGRPDMALFKFTKA++++++IDVYN G+M RDFTY+DDIVEA+ R+    + PN E
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  241  WTVETGSPADSSAPYRVYNIGNSSPVELMDYITALEEALGMVAEKNMMPIQPGDVLETSA  300
            W+     P+ S APY+VYNIGN+SPV LM+++ A+E+ LG  A KN M +QPGDV ET A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  301  DTRPLYDAVGFRPQTTVSQGVKNFVDWYKAYYK  333
            +   L+  ++F+P+TT+ +GV++FVDWY  YYK
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

161) wbnF in NC_010554


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  353 bits (1326),  Expect = 6e-99, Method: Compositional matrix adjust.
 Identities = 194/334 (59%), Positives = 272/334 (82%), Gaps = 1/334 (0%)

Query  1    MKYLVTGAAGFIGFHLIKKLIQQGETVVGIDNLNDYYDVALKEARLNLLNQLDNFSFSFI  60
            MK L+TG+AGFIG HL KKLI+QG+ V+G+D++NDYY V+LKE RL+ + + +NF+F+ +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DLADREKIAQLFEIEKFDRVIHLAAQAGVRYSLINPFSYADSNLTGFLTILEGCRHNNVK  120
             L + + ++++F  E+ + V++LAAQAGVRYS+ NP +Y DSN+ GF+ ILE  RH N++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGLNDELPFSPHDQANHPVSLYAATKKANELMAHSYSHLYGIPTTGLRFF  180
            +L+YASSSSVYG N   PFS  D+ +HP+SLYAATKK+NELMAH+YSHLY +PTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTKAIINNQPIDIYNHGEMKRDFTYVEDIVEGVTRIADVIPTAQQ  240
            TVYGPWGRPDMALFKFTKAI+N+Q+ID+YNHG+M RDFTYV+DIVE+++R+    +++++
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWKVSTGTPADSSAPYKVYNIGNGSPVNLMDYISALEIHLGKKADKNMLPMQPGDVYTTW  300
            +W  +   P+ S APYKVYNIGN SPV LM+++ A+E  LGK A KN + +QPGDV  T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTEDLFKATGYKPQTSVDEGVKQFVDWYKNYYQ  334
            A+ +DLF+  ++KP+T++++GV++FVDWY +YY+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

162) Tmz1t_3455 in NC_011662


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  353 bits (1326),  Expect = 6e-99, Method: Compositional matrix adjust.
 Identities = 194/334 (59%), Positives = 264/334 (80%), Gaps = 1/334 (0%)

Query  1    MKILVTGAAGFIGMHTTLRLLARGDEVVGLDNLNDYYDPTLKEARLARLQPHAGFRFVKM  60
            MKIL+TG+AGFIG H + +L+ +G+ V+G+D++NDYY  +LKE RL  +     F F K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  61   DVADRAGMEALFAAEKFDRVIHLAAQAGVRYSLQNPHAYVDSNLVGFMNILEGCRHAKVQ  120
             + +  ++  +F  E+ + V++LAAQAGVRYS++NP++Y+DSN+VGFMNILE  RH ++Q
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGGNTKMPFSESDSVDHPVSIYAATKKANELMAHTYSHLYGLPTTGLRFF  180
            +L+YASSSSVYG+NT  PFS SD++DHP+S+YAATKK+NELMAHTYSHLY LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFLFTKAILEGRPIDVFNHGRMRRDFTYVDDIVEGVIRTLDRIAEPDP  240
            TVYGPWGRPDMALF FTKAI+++++IDV+NHG M RDFTYVDDIVE++ R + + A P+ 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  AFDPMQPNPGTGSAPYRVFNIGNHDPVELMEFVAAIEDALGTTAQKNFLPLQDGDVPATY  300
                 +P+PG++ APY+V+NIGN+ PV LMEFV AIE+ LG  A+KN++ LQ GDVP TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTAALNAWTGFAPATSVREGVGRFIAWYREYYR  334
            A+   L    +F P T++++GV +F+ WY EYY+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

163) wbnF in NC_008702


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  353 bits (1325),  Expect = 7e-99, Method: Compositional matrix adjust.
 Identities = 198/333 (60%), Positives = 263/333 (79%), Gaps = 1/333 (0%)

Query  1    MKILVTGAAGFIGMHTSERLLARGDEVVGLDNLNDYYDPRLKEDRLARLTPNDGFRFVRM  60
            MKIL+TG+AGFIG H + +L+ +G+ V+G+D++NDYY   LKEDRL  +  ++ F F ++
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG-KENFTFNKV  59

Query  61   DVADRAGMEALFAAEKFDRVIHLAAQAGVRYSLQNPHAYIDSNLVGFTNILEGCRHSKVQ  120
             + +  ++  +F  E+ + V++LAAQAGVRYS++NP++YIDSN+VGF NILE  RH ++Q
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGGNTRMPFSEHDSVDHPVSLYAATKKANELMAHTYSHLYGLPTTGLRFF  180
            +L+YASSSSVYG+NT  PFS  D++DHP+SLYAATKK+NELMAHTYSHLY LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFLFTKAILEGRAIDVFNHGRMKRDFTYIDDIVEGVLRTLDRVAEPDP  240
            TVYGPWGRPDMALF FTKAI++++AIDV+NHG M RDFTY+DDIVE++ R + + A P+ 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  AFDSDHPDPGRGKAPYRVFNIGNNNPVELMAFIEAIEGALGRTAEKNFLPLQDGDVPATY  300
               + +PDPG + APY+V+NIGNN+PV LM F+EAIE  LG+ A KN++ LQ GDVP TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ANTDELNAWTGFAPATSVSDGVGRFVAWYRAYY  333
            AN D+L    +F P T++ DGV +FV WY  YY
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

164) Spea_1419 in NC_009901


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  353 bits (1326),  Expect = 7e-99, Method: Compositional matrix adjust.
 Identities = 198/335 (60%), Positives = 279/335 (84%), Gaps = 1/335 (0%)

Query  1    MKYLVTGAAGFIGAKVSERLCAAGHEVVGIDNINDYYDVNLKLDRLKNLEPLALFSFKKL  60
            MK L+TG+AGFIG+ ++ +L   GH V+G+D+INDYY V+LK DRLK++     F+F+K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DLADREGIAALFAEQSFDRVIHLAAQAGVRYSIDNPMAYADSNLVGHLTILEGCRHHKIQ  120
             L + ++++ +F ++  + V++LAAQAGVRYSI+NP +Y DSN+VG + ILE  RH +IQ
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGLNSKMPFSTDDSVDHPISLYAATKKANELMSHTYSHLYSVPTTGLRFF  180
            +L+YASSSSVYG N+  PFST D++DHP+SLYAATKK+NELM+HTYSHLY++PTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWSRPDMALLKFTNKIVKGEAIDVYNHGNLSRDFTYIDDIVEGIIRIQDSIPSANA  240
            TVYGPW+RPDMAL+KFT+ IV+++AIDVYNHGN+ RDFTY+DDIVE+I R+    +S+N 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  EWNaaeatpatssapYRVFNIGNGSPVKLMDYISALEKSLGIEAIKNMMDMQPGDVHSTW  300
            EW++A++ P++S APY+V+NIGN SPV+LM+++ A+E+ LG EA KN MD+QPGDV  T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTEDLFKTVGYKPQTSVEEGVQKFVEWYKEYYMK  335
            A+ +DLF+ +++KP+T++++GV+KFV+WY EYY K
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

165) AHA_2881 in NC_008570


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  353 bits (1326),  Expect = 7e-99, Method: Compositional matrix adjust.
 Identities = 192/334 (58%), Positives = 268/334 (81%), Gaps = 1/334 (0%)

Query  1    MHYLVTGAAGFIGSAVSQRLCQQGHTVIGIDNLNDYYEVSLKESRLARLASESNFVFRKI  60
            M  L+TG+AGFIGS ++++L +QGH VIG+D++NDYY VSLKE RL  ++ E NF F K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKV  59

Query  61   DLADREGMAKLFTHERFDRVIHLAAQAGVRYSLENPFAYADSNLIGHLAILEGCRHTGVK  120
             L + ++++K+F +E+ + V++LAAQAGVRYS+ENP +Y DSN++G + ILE  RH  ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGMNGKMPFATTDAVDHPISLYAASKKANELMAHTYSHLYGIPTTGLRFF  180
            +L+YASSSSVYG N   PF+T+D +DHP+SLYAA+KK+NELMAHTYSHLY +PTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTKAMLAGQPIDVYNNGQLSRDFTYIDDIVEGILRISDVVPVANP  240
            TVYGPWGRPDMALFKFTKA++ +Q+IDVYN+G++ RDFTY+DDIVE+I R+    + +N 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWQSEKGSPADSSAPYRIFNIGNGSPVKLMSFIDALEKALGIEAIKNMMPMQAGDVYATW  300
            +W +    P+ S APY+++NIGN SPV+LM F++A+E+ LG EA KN M +Q+GDV  T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTDDLFKATGYRPAMSVEQGVQAFVDWYKNYYK  334
            A+ DDLF+  +++P  ++++GV+ FVDWY +YYK
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

166) wbnF in NC_022000


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  353 bits (1324),  Expect = 8e-99, Method: Compositional matrix adjust.
 Identities = 193/335 (58%), Positives = 268/335 (80%), Gaps = 1/335 (0%)

Query  1    MKILVTGAAGFIGYHLSQRLIEMGYHVIGIDNLNDYYDVRLKEARLAKLNQLDNFQFEKI  60
            MKIL+TG+AGFIG HL+++LI  G  VIG+D++NDYY V LKE RL  + + +NF F+K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DITDSVSIAQLFADHRFDRVIHLAAQPGVRYSIENPMAYIDANIVGHINILEGCRHHNVG  120
             + +   ++++F D++ + V++LAAQ+GVRYSIENP +YID+NIVG +NILE  RH N+ 
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLIYSSSSSVYGLNQKQPFSTEDSVDHPVSLYAATKKANELMSHSYSHLYQLPTTGLRFF  180
            +LIY+SSSSVYG N  +PFST D++DHP+SLYAATKK+NELM+H+YSHLY+LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTKAMLAGEPIDVYNGGNMTRDFTYVDDIVSSVVRLINIIPQPNP  240
            TVYGPWGRPDMALFKFTKA++ +++IDVYN GNM RDFTYVDDIV ++ RL++  + PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  NWTVEQGETSSSSAPYKIYNVGNGQPTKLMDFITAIEKSLNIKAKLNLMPMQDGDVLSTC  300
            +W+  + + +SS APYK+YN+GN  P +LM+F+ AIE+ L   A+ N M +Q GDV  T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADCSDLAQTTGFSPNTAVEYGVKQFVDWYVDYYQQ  335
            A+  DL +  +F P+T+++ GV++FVDWY++YY++
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

167) wbnF in NC_010554


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  353 bits (1325),  Expect = 8e-99, Method: Compositional matrix adjust.
 Identities = 192/335 (58%), Positives = 268/335 (80%), Gaps = 1/335 (0%)

Query  1    MKILVTGAAGFIGYHLSQRLIEMGYHVVGIDNLNDYYDVRLKEARLAKLNQLDNFQFDKI  60
            MKIL+TG+AGFIG HL+++LI  G  V+G+D++NDYY V LKE RL  + + +NF F+K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DITDSVSIAQLFADHRFDRVIHLAAQPGVRYSIENPMAYIDANIVGHINILEGCRHHNVG  120
             + +   ++++F D++ + V++LAAQ+GVRYSIENP +YID+NIVG +NILE  RH N+ 
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLIYSSSSSVYGLNQKQPFSTEDSVDHPVSLYAATKKANELMSHSYSHLYQLPTTGLRFF  180
            +LIY+SSSSVYG N  +PFST D++DHP+SLYAATKK+NELM+H+YSHLY+LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTKAMLAGEPIDVYNGGNMTRDFTYVDDIVSSVVRLINIIPQPNP  240
            TVYGPWGRPDMALFKFTKA++ +++IDVYN GNM RDFTYVDDIV ++ RL++  + PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  NWTVEQGETSSSSAPYKIYNVGNGQPTKLMDFITAIEKSLNIKAKLNLMPMQDGDVLSTC  300
            +W+  + + +SS APYK+YN+GN  P +LM+F+ AIE+ L   A+ N M +Q GDV  T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADCSDLAQTTGFSPNTAVEYGVKQFVDWYVDYYQQ  335
            A+  DL +  +F P+T+++ GV++FVDWY++YY++
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

168) Cyast_0712 in NC_019778


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  352 bits (1323),  Expect = 1e-98, Method: Compositional matrix adjust.
 Identities = 198/334 (60%), Positives = 275/334 (83%), Gaps = 7/334 (2%)

Query  1    MNILVTGAAGFIGFYLTQELLSRGESVIGIDNLNDYYDTSLKTARLQKLAAQKNFTFHKL  60
            M+IL+TG+AGFIG  L++ L+ +G+ VIG+D++NDYY  SLK  RL+ ++ + NFTF+K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKV  59

Query  61   DLANRKNLEQLFKNNQFDFVIHLAAQAGVRYSIENPHAYVDSNLVGFVNLLECCRHNSIK  120
             L N  +L ++F ++Q + V++LAAQAGVRYSIENP++Y+DSN+VGF+N+LEC RH +I+
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVFASSSSVYGANKKIPFSTSDNVDNPVSLYAATKKANELMAHTYSHLYHIPCTGLRFF  180
            +L++ASSSSVYGAN   PFSTSDN+D+P+SLYAATKK+NELMAHTYSHLY++P TGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMAYFLFTKAILEGKPIKVFNYGRMQRDFTYIDDIVEGIIRVMNHLP----  236
            TVYGPWGRPDMA F FTKAI+++++I V+N G M RDFTY+DDIVE+I R+++  +    
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  237  --QSSTAEDGSKIPPYKIYNIGNNQPVELTRFIEVIENCLGMEAEKNFLPIQPGDVPTTY  294
               ++ ++ GS  +PYK+YNIGNN PV L  F+E IEN LG EA KN++ +QPGDVP TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  295  ADIDDLIQDVGFKPTTSIEEGIERFVSWYKDYYK  328
            A++DDL++D++FKP T+I++G+++FV WY +YYK
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

169) EAT1b_1377 in NC_012673


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  352 bits (1322),  Expect = 1e-98, Method: Compositional matrix adjust.
 Identities = 191/330 (58%), Positives = 262/330 (80%), Gaps = 0/330 (0%)

Query  4    TVLVTGVAGFIGFHLARRLLKEGHHVIGIDVVNDYYDPRLKESRLHVLTHPRFKLYRDAL  63
             +L+TG AGFIG HLA++L+K+GH VIG+D +NDYY   LKE RL  +    F + +  L
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVKL  61

Query  64   ENKMAITRVFEKNQPQVVVNLAAQAGVRYSLENPDAYIQSNIVGFLNILEACRFYPVEQL  123
            EN   +++VF  +QP+VVVNLAAQAGVRYS+ENP +YI+SNIVGF+NILE  R + +++L
Sbjct  62   ENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNL  121

Query  124  IYASSSSVYGSNQAMPFSEQHPVDHPLSLYAASKKANELMAHTYSHLFGLKTTGLRFFSV  183
            IYASSSSVYG+N + PFS  + +DHPLSLYAA+KK+NELMAHTYSHL+ L TTGLRFF+V
Sbjct  122  IYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTV  181

Query  184  YGPWGRPDMALYKFTEAILKGEPIDVYNYGEMERDFTYIDDIIESIVRLMDIAPMADEEF  243
            YGPWGRPDMAL+KFT AI+++++IDVYN G+M RDFTY+DDI+E+I RL+  ++ ++ E 
Sbjct  182  YGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEW  241

Query  244  DYEHPLPDRSDVPFRVYNIGNQQPVSLMDFIRTIEERVGKKAILSLLPLQAGDVPASFAD  303
               +P P+ S  P++VYNIGN+ PV LM+F+ +IE+++GK A  + + LQ+GDVP ++A+
Sbjct  242  SGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYAN  301

Query  304  SSSLYESIDFQPQTSIRDGVNAFIDWYIAY  333
               L+  IDF+P+T+I+DGVN F+DWY+ Y
Sbjct  302  VDDLFRDIDFKPETTIQDGVNKFVDWYLEY  331

170) C427_4161 in NC_020514


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  352 bits (1323),  Expect = 1e-98, Method: Compositional matrix adjust.
 Identities = 194/338 (58%), Positives = 269/338 (80%), Gaps = 4/338 (1%)

Query  1    MKILVTGVAGFIGFHIAKELLARGDTVIGIDNINDYYDVKLKQGRLNALAEHALSENFTF  60
            MKIL+TG AGFIG H+AK L+ +G+ VIG+D+INDYY V LK++RL++++     ENFTF
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG----KENFTF  56

Query  61   LKMDLAHRTEVGSLFLSSAFDKVVHLAAQAGVRYSIENPHAYVDSNLIGFMNILEGCRHN  120
             K+ L +  +++ +F+    + VV+LAAQAGVRYSIENP++Y+DSN++GFMNILE  RH 
Sbjct  57   NKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHF  116

Query  121  KIKHLVYASSSSVYGSNESTPFAVTDNVDHPVSLYAASKKANELMAHTYSHLYQLPTTGL  180
            +I++L+YASSSSVYG+N S PF+ +DN+DHP+SLYAA+KK+NELMAHTYSHLY+LPTTGL
Sbjct  117  NIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGL  176

Query  181  RFFTVYGPWGRPDMALFKFTQSILNGTPIEVFNYGNHHRDFTYIDDIVSGVILSLDNVAE  240
            RFFTVYGPWGRPDMALFKFT++I+N+ +I+V+N GN  RDFTY+DDIV ++   + + A 
Sbjct  177  RFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPAS  236

Query  241  GNENWDGKNPDPSTSKAPWKIYNIGAHNPVNLLKFIETLEAALGKKAIKEMLPMQPGDVP  300
             N +W G +PDP++S AP K+YNIG ++PV L+ F+E++E  LGK A K+ + +QPGDVP
Sbjct  237  PNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVP  296

Query  301  DTYADVSALANDTGYSPKTDLTTGIQQFVSWYHAFYSQ  338
            +TYA+V  L  D ++ P T +  G+++FV WY  +Y +
Sbjct  297  ETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

171) wbnF in NC_012962


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  352 bits (1322),  Expect = 1e-98, Method: Compositional matrix adjust.
 Identities = 193/335 (58%), Positives = 274/335 (82%), Gaps = 1/335 (0%)

Query  1    MKFLVTGAAGFIGFHVSQRLLQMGHEVVGLDNLNDYYDVNLKQARLDLLFDSSGFKFEKL  60
            MK+L+TG+AGFIG H++++L++ GH V+G+D++NDYY V+LK+ RL  + +   F F+K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  61   DLADRIAIPALFERHQFQRVIHLGAQAGVRYSLQNPMAYIDSNIIGHINILEACRHNNVE  120
             L +   ++ +F  +Q + V++L+AQAGVRYS++NP +YIDSNI+G +NILE  RH N++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLLYsssssVYGLNRKQPFSTNDSVDHPISLYAATKKSDELMSHSYSHLYQLPTTGLRFF  180
            +L+Y+SSSSVYG N  +PFST+D++DHP+SLYAATKKS+ELM+H+YSHLY+LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTKAMLSGQPIDVYNHGNMVRDFTYIDDIVESIVRLQGIIPAPNE  240
            TVYGPWGRPDMALFKFTKA++++Q+IDVYNHGNM+RDFTY+DDIVE+I RL    ++PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  SWVVEDGQISASSAPYCIYNIGNGQPTRLGDFIEAIEESLGIQAKKNFMPMQDGDVLSTC  300
             W   D + ++S APY +YNIGN  P RL +F+EAIE+ LG +A+KN+M +Q GDV  T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADSSDIFQKIGFSPNTSVRHGVKQFVEWYLSFYHK  335
            A+  D+F+ I+F P+T++++GV++FV+WYL +Y K
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

172) wbnF in NC_013971


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  352 bits (1322),  Expect = 1e-98, Method: Compositional matrix adjust.
 Identities = 189/335 (57%), Positives = 270/335 (81%), Gaps = 1/335 (0%)

Query  1    MKYLVTGAAGFIGFHVAQRLLNAGHQVVGLDNLNDYYDVNLKTARLALISHHASFTFIKG  60
            MK L+TG+AGFIG H+A++L++ GH V+G+D++NDYY V+LK  RL  I+ + +FTF K 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKV  59

Query  61   DLADREGMAELFRCHRFQRVIHLAAQAGVRYSLENPLAYADANLVGHLNILEGCRHNQVE  120
             L + ++++ +F  ++ + V++LAAQAGVRYS+ENP +Y D+N+VG +NILE  RH +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMSHTYSHLYGIPTSGLRFF  180
            +L+YASSSSVYG N   PFST D++DHP+SLYAATKK+NELM+HTYSHLY +PT+GLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTRAIIAGEKIDVYNHGQMRRDFTYIDDIVESVFRLQEVIPQADK  240
            TVYGPWGRPDMALFKFT+AI+ ++ IDVYNHG+M RDFTY+DDIVE++ RL    + ++K
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWTVEAGSPATSSAPYRVYNIGNSQPVTLMDYIGALESALGTVADKNMLQMQPGDVVDTS  300
            +W+     P++S APY+VYNIGN+ PV LM+++ A+E+ LG  A KN +++QPGDV +T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADISALYKAIGFKPQTSVKEGVARFVSWYKEFYHK  335
            A++  L++ I+FKP+T++++GV +FV WY E+Y K
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

173) topB1 in NC_013961


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  352 bits (1322),  Expect = 1e-98, Method: Compositional matrix adjust.
 Identities = 189/335 (57%), Positives = 270/335 (81%), Gaps = 1/335 (0%)

Query  1    MKYLVTGAAGFIGFHVAQRLLNAGHQVVGLDNLNDYYDVNLKTARLALISHHASFTFIKG  60
            MK L+TG+AGFIG H+A++L++ GH V+G+D++NDYY V+LK  RL  I+ + +FTF K 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKV  59

Query  61   DLADREGMAELFRCHRFQRVIHLAAQAGVRYSLENPLAYADANLVGHLNILEGCRHNQVE  120
             L + ++++ +F  ++ + V++LAAQAGVRYS+ENP +Y D+N+VG +NILE  RH +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMSHTYSHLYGIPTSGLRFF  180
            +L+YASSSSVYG N   PFST D++DHP+SLYAATKK+NELM+HTYSHLY +PT+GLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTRAIIAGEKIDVYNHGQMRRDFTYIDDIVESVFRLQEVIPQADK  240
            TVYGPWGRPDMALFKFT+AI+ ++ IDVYNHG+M RDFTY+DDIVE++ RL    + ++K
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWTVEAGSPATSSAPYRVYNIGNSQPVTLMDYIGALESALGTVADKNMLQMQPGDVVDTS  300
            +W+     P++S APY+VYNIGN+ PV LM+++ A+E+ LG  A KN +++QPGDV +T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADISALYKAIGFKPQTSVKEGVARFVSWYKEFYHK  335
            A++  L++ I+FKP+T++++GV +FV WY E+Y K
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

174) Gura_2598 in NC_009483


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  352 bits (1322),  Expect = 2e-98, Method: Compositional matrix adjust.
 Identities = 202/332 (61%), Positives = 267/332 (81%), Gaps = 1/332 (0%)

Query  24   MKILITGIAGFIGMHVALRLLERGDEIVGIDNLNDYYDVGLKRARLEHLKQYGSVRFVEM  83
            MKILITG AGFIG H+A +L+ +G+ ++G+D++NDYY V+LK  RL  + +  +  F  +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  84   DLADAPRLAELFAAEKFRRVVHLAAQAGVRYSLQNPRAYIDSNIVGFLNVLEGCRHHPVE  143
             L +   L+ +F  E+   VV+LAAQAGVRYS++NPR+YIDSNIVGF+N+LE  RH  ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  144  HLVYASSSSVYGANTRMPFSVHHNVDHPVSLYAATKKANELMAHTYSHLYGIPTTGLRFF  203
            +L+YASSSSVYGANT  PFS  +N+DHP+SLYAATKK+NELMAHTYSHLY +PTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  204  TVYGPWGRPDMAYFSFTQKIIAGKAINVFNNGNMLRDFTYIDDIVEGVVRVLDRFPSPNP  263
            TVYGPWGRPDMA F FT+ I+ ++AI+V+N+GNM+RDFTY+DDIVE++ R++ + +SPN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  264  SWSGDSPDPASSQAPYLIYNIGNNSPVELGVFIEVLEECLGQKAVKNYLPMQPGDVPATY  323
             WSG  PDP+SS APY +YNIGNNSPV L  F+E +E+ LG+ A KNY+ +QPGDVP TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  324  ADVDDLITDVGFAPVTAIKEGIGKFVDWYKGY  355
            A+VDDL+ D++F P T+I++G+ KFVDWY  Y
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEY  331

175) Dbac_3039 in NC_013173


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  351 bits (1320),  Expect = 2e-98, Method: Compositional matrix adjust.
 Identities = 206/334 (62%), Positives = 274/334 (83%), Gaps = 1/334 (0%)

Query  1    MKILITGAAGFIGFHLARRFLATGTSVFGLDNLNDYYSVElkkdrlkllqqdANFHFEPI  60
            MKILITG+AGFIG HLA++++  G  V+G+D++NDYYSV LK DRLK + +  NF F+ +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DLADGAALDAYFKANKFTHVVNLAAQAGVRYSLLNPKSYIDSNIVGFANLLECCRHNDTK  120
             L +   L   F  ++   VVNLAAQAGVRYS+ NP++YIDSNIVGF N+LEC RH + +
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGLNTSMPFSVHDNVDHPVSLYAASKKSNELMAHTYSYLYKLPTTGLRFF  180
            +L+YASSSSVYG NTS PFS  DN+DHP+SLYAA+KKSNELMAHTYS LY+LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALYLFTKAICENKPINVFNHGKMRRDFTYIDDIVEGVFRIVSHVPTGNP  240
            TVYGPWGRPDMAL+ FTKAI ++++I+V+NHG+M RDFTY+DDIVE++ R+V   ++ N 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWDGKNPDPSTSPAPYKLYNIGNNNTVELEQFITVLENALGRKAVRNYMDIQPGDVPATY  300
            +W G +PDP++S APYK+YNIGNN+ V L +F+  +EN LG+ A +NYMD+QPGDVP TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ANIDDLIKEVGFKPSTSIEEGIEKFIAWYKDYYR  334
            AN+DDL+++++FKP T+I++G++KF+ WY +YY+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

176) Sbal175_4257 in NC_017571


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  351 bits (1320),  Expect = 2e-98, Method: Compositional matrix adjust.
 Identities = 192/335 (58%), Positives = 264/335 (79%), Gaps = 1/335 (0%)

Query  1    MKYLVTGAAGFIGAKVSERLCLLGHEVIGIDNLNDYYDVNLKLARLDLLQTLDNFHFIKL  60
            MK L+TG+AGFIG+ ++ +L   GH VIG+D++NDYY V+LK  RL  +   +NF F K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DLADREGIAALFARHAFQRVIHLAAQAGVRYSLDNPLAYADSNLIGHLTILEGCRHHKIE  120
             L + ++++ +F  +  + V++LAAQAGVRYS++NP +Y DSN++G + ILE  RH +I+
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGLNQKMPFSTEDSIDHPISLYAATKKANELMSHTYSHLYQLPTTGLRFF  180
            +L+YASSSSVYG N   PFST D+IDHP+SLYAATKK+NELM+HTYSHLY+LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTKAILAGEVIDVYNHGDLSRDFTYIDDIVEGIIRVQAKPPSPNT  240
            TVYGPWGRPDMALFKFTKAI+ ++ IDVYNHG++ RDFTY+DDIVE+I R+  KP+SPN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWTVDAGTPATSSAPYRVFNIGNGSPVQLLDFITALEDALGIKANKNFLPMQPGDVHSTW  300
            +W+     P++S APY+V+NIGN SPV+L++F+ A+E+ LG  A KN++ +QPGDV  T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTSDLFDAVGYKPLVDINTGVAQFVNWYRQFYNK  335
            A+  DLF  +++KP   I+ GV +FV+WY ++Y+K
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

177) Sbal117_0070 in NC_017579


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  351 bits (1320),  Expect = 2e-98, Method: Compositional matrix adjust.
 Identities = 192/335 (58%), Positives = 264/335 (79%), Gaps = 1/335 (0%)

Query  1    MKYLVTGAAGFIGAKVSERLCLLGHEVIGIDNLNDYYDVNLKLARLDLLQTLDNFHFIKL  60
            MK L+TG+AGFIG+ ++ +L   GH VIG+D++NDYY V+LK  RL  +   +NF F K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DLADREGIAALFARHAFQRVIHLAAQAGVRYSLDNPLAYADSNLIGHLTILEGCRHHKIE  120
             L + ++++ +F  +  + V++LAAQAGVRYS++NP +Y DSN++G + ILE  RH +I+
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGLNQKMPFSTEDSIDHPISLYAATKKANELMSHTYSHLYQLPTTGLRFF  180
            +L+YASSSSVYG N   PFST D+IDHP+SLYAATKK+NELM+HTYSHLY+LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTKAILAGEVIDVYNHGDLSRDFTYIDDIVEGIIRVQAKPPSPNT  240
            TVYGPWGRPDMALFKFTKAI+ ++ IDVYNHG++ RDFTY+DDIVE+I R+  KP+SPN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWTVDAGTPATSSAPYRVFNIGNGSPVQLLDFITALEDALGIKANKNFLPMQPGDVHSTW  300
            +W+     P++S APY+V+NIGN SPV+L++F+ A+E+ LG  A KN++ +QPGDV  T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTSDLFDAVGYKPLVDINTGVAQFVNWYRQFYNK  335
            A+  DLF  +++KP   I+ GV +FV+WY ++Y+K
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

178) Sbal_0070 in NC_009052


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  351 bits (1320),  Expect = 2e-98, Method: Compositional matrix adjust.
 Identities = 192/335 (58%), Positives = 264/335 (79%), Gaps = 1/335 (0%)

Query  1    MKYLVTGAAGFIGAKVSERLCLLGHEVIGIDNLNDYYDVNLKLARLDLLQTLDNFHFIKL  60
            MK L+TG+AGFIG+ ++ +L   GH VIG+D++NDYY V+LK  RL  +   +NF F K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DLADREGIAALFARHAFQRVIHLAAQAGVRYSLDNPLAYADSNLIGHLTILEGCRHHKIE  120
             L + ++++ +F  +  + V++LAAQAGVRYS++NP +Y DSN++G + ILE  RH +I+
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGLNQKMPFSTEDSIDHPISLYAATKKANELMSHTYSHLYQLPTTGLRFF  180
            +L+YASSSSVYG N   PFST D+IDHP+SLYAATKK+NELM+HTYSHLY+LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTKAILAGEVIDVYNHGDLSRDFTYIDDIVEGIIRVQAKPPSPNT  240
            TVYGPWGRPDMALFKFTKAI+ ++ IDVYNHG++ RDFTY+DDIVE+I R+  KP+SPN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWTVDAGTPATSSAPYRVFNIGNGSPVQLLDFITALEDALGIKANKNFLPMQPGDVHSTW  300
            +W+     P++S APY+V+NIGN SPV+L++F+ A+E+ LG  A KN++ +QPGDV  T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTSDLFDAVGYKPLVDINTGVAQFVNWYRQFYNK  335
            A+  DLF  +++KP   I+ GV +FV+WY ++Y+K
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

179) CbuK_0712 in NC_011528


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  351 bits (1319),  Expect = 2e-98, Method: Compositional matrix adjust.
 Identities = 185/333 (56%), Positives = 271/333 (82%), Gaps = 1/333 (0%)

Query  6    MRTLVTGCAGFIGFHLTKRLLARGDHILGLDNLNDYYDVNLKEARLAQLKEFPHFSFHKL  65
            M+ L+TG AGFIG HL+K+L+ +G+ ++G+D++NDYY V+LKE RL  +    +F+F+K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  66   DLADRQGMTDLFQKHLFDTVVHLAAQAGVRYSLTNPYAYVDSNLVGFAHILEGCRHQSVK  125
             L + ++++ +F  +  + VV+LAAQAGVRYS+ NP +Y+DSN+VGF +ILE  RH +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  126  HLVFASSSSVYGANEKYPFSESDNVDHPIALYAASKKANELMAHSYAHLFQLPCTGLRFF  185
            +L++ASSSSVYGAN   PFS SDN+DHP++LYAA+KK+NELMAH+Y+HL++LP TGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  186  TVYGPWGRPDMALFKFTRNLLADKPIDVYNHGKMSRDFTYIDDIVDGILLTLDHPPEPNS  245
            TVYGPWGRPDMALFKFT+ ++ D++IDVYNHG+M RDFTY+DDIV++I   +  P+ PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  246  AYSANQPNPAKSNAPYRIYNIGSNNPILLTDFIAILEKTLNKKAIKNFLPLQPGDVPETY  305
              S+ +P+P+ S APY++YNIG+N+P+ L +F+  +E+ L K A KN++ LQPGDVPETY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  306  ADVSQLEKDFQYRPRTPLQKGVKNFVEWYLQYF  338
            A+V +L +D++++P T +Q GV++FV+WYL+Y+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

180) CBUD_0909 in NC_009727


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  351 bits (1320),  Expect = 2e-98, Method: Compositional matrix adjust.
 Identities = 186/333 (56%), Positives = 271/333 (82%), Gaps = 1/333 (0%)

Query  6    MRTLVTGCAGFIGFHLTKRLLARGDHILGLDNLNDYYDVNLKEARLAQLKEFPHFSFHKL  65
            M+ L+TG AGFIG HL+K+L+ +G+ ++G+D++NDYY V+LKE RL  +    +F+F+K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  66   DLADRQGMTDLFQKHLFDTVVHLAAQAGVRYSLTNPYAYVDSNLVGFAHILEGCRHQSVK  125
             L + ++++ +F  +  + VV+LAAQAGVRYS+ NP +Y+DSN+VGF +ILE  RH +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  126  HLVFASSSSVYGANEKYPFSESDNVDHPIALYAASKKANELMAHSYSHLFQLPCTGLRFF  185
            +L++ASSSSVYGAN   PFS SDN+DHP++LYAA+KK+NELMAH+YSHL++LP TGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  186  TVYGPWGRPDMALFKFTRNLLADKPIDVYNHGKMSRDFTYIDDIVDGILLTLDHPPEPNS  245
            TVYGPWGRPDMALFKFT+ ++ D++IDVYNHG+M RDFTY+DDIV++I   +  P+ PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  246  AYSANQPNPAKSNAPYRIYNIGSNNPILLTDFIAILEKTLNKKAIKNFLPLQPGDVPETY  305
              S+ +P+P+ S APY++YNIG+N+P+ L +F+  +E+ L K A KN++ LQPGDVPETY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  306  ADVSQLEKDFQYRPRTPLQKGVKNFVEWYLQYF  338
            A+V +L +D++++P T +Q GV++FV+WYL+Y+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

181) GC56T3_3299 in NC_014206


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  351 bits (1318),  Expect = 3e-98, Method: Compositional matrix adjust.
 Identities = 203/334 (61%), Positives = 278/334 (84%), Gaps = 1/334 (0%)

Query  1    MTILVTGAAGFIGMHFSKRLLEEGYEVVGIDNLNDYYDPklkedrllelkkYSRFTFVQL  60
            M IL+TG+AGFIG H++K+L+ +G  V+G+D++NDYY   LKEDRL  + K   FTF ++
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DLADREGLFALFRNYAFTHVVHLAAQAGVRYSLQNPYAYVDSNIVGFVNILEACRHNPVN  120
             L + ++L  +F +     VV+LAAQAGVRYS++NP +Y+DSNIVGF+NILE  RH  ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLIYASSSSVYGANAKMPFSTSDNVDHPVSLYAATKKANELMAHTYSHLYGIPTTGLRFF  180
            +LIYASSSSVYGAN+  PFSTSDN+DHP+SLYAATKK+NELMAHTYSHLY +PTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMAYFSFTKNILEGKPIKVFNHGNMKRDFTYIDDIVEGMARLLDRPPLPNE  240
            TVYGPWGRPDMA F FTK I+++++I V+NHGNM RDFTY+DDIVE+++RL+ +P+ PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  QWDRFHPDPSSSYAPYKIYNIGHNQPVKLLDFIQTLESLLGVEAKKEFLPMQPGDVEATY  300
            +W   +PDP+SSYAPYK+YNIG+N PV+L++F++++E+ LG EA+K+++ +QPGDV  TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADIDDLHQAVGFQPSTSIQDGLKRFVDWYKAYYQ  334
            A++DDL + ++F+P T+IQDG+++FVDWY  YY+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

182) Despr_2467 in NC_014972


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  351 bits (1317),  Expect = 3e-98, Method: Compositional matrix adjust.
 Identities = 195/335 (59%), Positives = 270/335 (81%), Gaps = 5/335 (1%)

Query  6    KILVTGAAGFIGHALTLRLLAEGRSVVGLDNLNDYYDPQLKRDRLAEL--QAFAAFHHVE  63
            KIL+TG+AGFIG  L+ +L+ +G+ V+G+D++NDYY   LK DRL  +  + F+ F+ V 
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFT-FNKV-  59

Query  64   FDMADRERTAALFAREQFDAVVNLAAQAGVRYSLINPHSYVDTNLVGFVNILEGCRHTGV  123
              + + +  + +F  EQ + VVNLAAQAGVRYS+ NP++Y+D+N+VGF+NILE  RH  +
Sbjct  60   -KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNI  118

Query  124  KHLVYASSSSVYGANTRMPFSVHDNVDHPVSLYAASKKANELMAHTYSHLFHIPTTGLRF  183
            ++L+YASSSSVYGANT  PFS  DN+DHP+SLYAA+KK+NELMAHTYSHL+++PTTGLRF
Sbjct  119  QNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRF  178

Query  184  FTVYGPWGRPDMALFLFTKAILEDRPINVFNNGNMERDFTYIDDIAEGVVRVIDHVASAN  243
            FTVYGPWGRPDMALF FTKAI++D++I+V+N+GNM RDFTY+DDI E++ R++   AS+N
Sbjct  179  FTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPN  238

Query  244  SQWSGDQPDAATSYCPWRVYNIGNNKKEKLMRYIEVLEDCLGKKARKNFLPLQDGDVPAT  303
             +WSG +PD+++SY P +VYNIGNN   +LM ++E +E+ LGK ARKN++ LQ GDVP T
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPET  298

Query  304  YADVADLVQAVGFKPSTSIEQGIRNFVDWYRRYYR  338
            YA+V DL + ++FKP T+I++G+ +FVDWY  YY+
Sbjct  299  YANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

183) Plim_3735 in NC_014148


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  351 bits (1317),  Expect = 3e-98, Method: Compositional matrix adjust.
 Identities = 196/334 (59%), Positives = 267/334 (80%), Gaps = 1/334 (0%)

Query  1    MKYLVTGAAGFIGFHTTKKLIARGDTVVGLDNLNDYYQVSLKHDRLAQLKNLPDFAFEQI  60
            MK L+TG+AGFIG H +KKLI +G+ V+G+D++NDYY VSLK+DRL  + +  +F+F+++
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   ELADRPAMKSLFERHQFDVVIHLAAQAGVRYSLTNPQAYIDSNLVGFCEILEGCRHSGVK  120
             L +   +  +F  +Q +VV++LAAQAGVRYS+ NP++YIDSN+VGF +ILE  RH  ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLAYASSSSVYGGNTKMPFSIHDNVDHPVSLYAATKKANELMAHTYSHLFRLPTTGLRFF  180
            +L YASSSSVYG+NT  PFS  DN+DHP+SLYAATKK+NELMAHTYSHL+ LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMAMWIFTKAILEGRPIDVFNEGKMRRDFTFIDDIVEGVVRVADNIPVPNT  240
            TVYGPWGRPDMA+  FTKAI+++++IDV+N+G+M RDFT++DDIVE++ R+  + + PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  SWQSDHPDPATSSAPYRVYNIGNNRPEDLMEMIGILESCLGKKAEKRLLPMQPGDVPATY  300
             W + +PDP++S APY+VYNIGNN P  LME +  +E+ LGK A K  + +QPGDVP TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADVDDLVKDVGFKPATPLATGIQRFVDWYRSYHK  334
            A+VDDL +D++FKP T +  G+++FVDWY  Y K
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

184) COXBURSA331_A1106 in NC_010117


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  351 bits (1317),  Expect = 3e-98, Method: Compositional matrix adjust.
 Identities = 185/333 (56%), Positives = 271/333 (82%), Gaps = 1/333 (0%)

Query  1    MRTLVTGCAGFIGFHLTKRLLARGDHILGLDNLNDYYDVNLKEARLAQLKEFPHFSFHKL  60
            M+ L+TG AGFIG HL+K+L+ +G+ ++G+D++NDYY V+LKE RL  +    +F+F+K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DLADRQGMTDLFQKHLFDTVVHLAAQAGVRYSLTNPYAYVDSNLVGFAHILEGCRHQSVK  120
             L + ++++ +F  +  + VV+LAAQAGVRYS+ NP +Y+DSN+VGF +ILE  RH +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVFASSSSVYGANEKYPFSESDNVDHPIALYAASKKANELMAHSYAHLFQLPCTGLRFF  180
            +L++ASSSSVYGAN   PFS SDN+DHP++LYAA+KK+NELMAH+Y+HL++LP TGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTRNLLADKPIDVYNHGKMSRDFTYIDDIVDGILLTLDHPPEPNS  240
            TVYGPWGRPDMALFKFT+ ++ D++IDVYNHG+M RDFTY+DDIV++I   +  P+ PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  AYSANQPNPAKSNAPYRIYNIGSNNPILLTNFIAILEKTLNKKAIKNFLPLQPGDVPETY  300
              S+ +P+P+ S APY++YNIG+N+P+ L +F+  +E+ L K A KN++ LQPGDVPETY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADVSQLEKDFQYRPRTPLQKGVKNFVEWYLQYF  333
            A+V +L +D++++P T +Q GV++FV+WYL+Y+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

185) CBU_0844 in NC_002971


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  351 bits (1317),  Expect = 3e-98, Method: Compositional matrix adjust.
 Identities = 185/333 (56%), Positives = 271/333 (82%), Gaps = 1/333 (0%)

Query  6    MRTLVTGCAGFIGFHLTKRLLARGDHILGLDNLNDYYDVNLKEARLAQLKEFPHFSFHKL  65
            M+ L+TG AGFIG HL+K+L+ +G+ ++G+D++NDYY V+LKE RL  +    +F+F+K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  66   DLADRQGMTDLFQKHLFDTVVHLAAQAGVRYSLTNPYAYVDSNLVGFAHILEGCRHQSVK  125
             L + ++++ +F  +  + VV+LAAQAGVRYS+ NP +Y+DSN+VGF +ILE  RH +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  126  HLVFASSSSVYGANEKYPFSESDNVDHPIALYAASKKANELMAHSYAHLFQLPCTGLRFF  185
            +L++ASSSSVYGAN   PFS SDN+DHP++LYAA+KK+NELMAH+Y+HL++LP TGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  186  TVYGPWGRPDMALFKFTRNLLADKPIDVYNHGKMSRDFTYIDDIVDGILLTLDHPPEPNS  245
            TVYGPWGRPDMALFKFT+ ++ D++IDVYNHG+M RDFTY+DDIV++I   +  P+ PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  246  AYSANQPNPAKSNAPYRIYNIGSNNPILLTNFIAILEKTLNKKAIKNFLPLQPGDVPETY  305
              S+ +P+P+ S APY++YNIG+N+P+ L +F+  +E+ L K A KN++ LQPGDVPETY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  306  ADVSQLEKDFQYRPRTPLQKGVKNFVEWYLQYF  338
            A+V +L +D++++P T +Q GV++FV+WYL+Y+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

186) DSC_06810 in NC_016147


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  351 bits (1318),  Expect = 3e-98, Method: Compositional matrix adjust.
 Identities = 187/334 (56%), Positives = 267/334 (80%), Gaps = 1/334 (0%)

Query  1    MKILVTGAAGFIGARLSQRLLERGDTVLGYDNLNDYYDPSLKEARLHRLQGQPGFAMVRG  60
            MKIL+TG+AGFIG++L+++L+ +G+ V+G D++NDYY  SLKE RL  + G+  F+  + 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  61   GLEDRAALEAAFDGFAPQRVVNLAAQAGVRYSLQNPHAYIQSNIVGFMNVLEACRHRGVE  120
             LE+   L   F +  P+ VVNLAAQAGVRYS++NP++YI+SNIVGFMN+LE  RH  ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGGNRKLPFAVEDSVDHPLSLYAASKKANELMAHTYSHLYRLPTTGLRFF  180
            +L+YASSSSVYG+N   PF+  D++DHPLSLYAA+KK+NELMAHTYSHLY LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFQFTQRILAGEPIELFNNGQHTRDFTYIDDIVEGVIRTLDHVPGPDP  240
            TVYGPWGRPDMALF+FT+ I+ +++I+++N+G+  RDFTY+DDIVE++ R +   ++P+ 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  NYDPRAPNPATSDAPYRVYNIGNNAPVQLLDYIEVLEDALGRKAQRRLLPLQPGDVPDTF  300
            +     P+P++S APY+VYNIGNN+PV+L++++E +E+ LG+ A++  + LQPGDVP+T+
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADVSALQRDVGYAPSTPIQTGIVRFVQWYRTYYK  334
            A+V  L RD+++ P T IQ G+ +FV+WY  YYK
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

187) Ser39006_1917 in NC_022268


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  351 bits (1317),  Expect = 3e-98, Method: Compositional matrix adjust.
 Identities = 186/334 (56%), Positives = 267/334 (80%), Gaps = 1/334 (0%)

Query  1    MKFLVTGAAGFIGFYVSQSLCADGHDVIGIDNLNNYYDVSLKEARLQKLQTVSRFRFEKL  60
            MK+L+TG+AGFIG  +++ L  +GH VIG+D++N+YY VSLKE RL+ +     F F+K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DIYDGKGLNALFAAEKFDRVIHLAAQAGVRYSLENPMAYADSNLIGHLNILECCRHHDVE  120
             + +  +L+ +F  E+ + V++LAAQAGVRYS+ENP +Y DSN++G +NILEC RH +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLLYASSSSVYGLNGKTPFSTCDSTDHPVSLYAATKKANELMAHSYSHLYGIPTTGLRFF  180
            +L+YASSSSVYG N   PFST D+ DHP+SLYAATKK+NELMAH+YSHLY +PTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTKSILAGNPIDIYNHGDMRRDFTYITDIVDGVVSIVNKVPVADS  240
            TVYGPWGRPDMALFKFTK+I+ +++ID+YNHG+M RDFTY+ DIV+++  +V+K + ++ 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  TWTVENGSPATSSAPYRVYNIGYGSPVKLMDFVTALENALGIEAKKHFMPMQAGDVYQTY  300
             W+  +  P++S APY+VYNIG  SPV+LM+FV A+EN LG EA+K++M +Q+GDV +TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTEDLLAMTGYRPKVGVVEGVQAFVDWYRDFYQ  334
            A+ +DL+   +++P   + +GV+ FVDWY ++Y+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

188) B1NLA3E_05000 in NC_021171


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  350 bits (1315),  Expect = 4e-98, Method: Compositional matrix adjust.
 Identities = 192/332 (58%), Positives = 273/332 (83%), Gaps = 4/332 (1%)

Query  1    MILITGCAGFIGFHLTKRLLEDGFEVIGIDNLNDYYDVSLKKSRLNLLLPFRSFTFKKVN  60
             ILITG AGFIG HL+K+L+ +G  VIG+D++NDYY VSLK  RL+ +    +FTF+KV+
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKVK  60

Query  61   LEDKQEIFEIFKHHQPSVVINLGAQAGVRYSLINPHAYVDSNITGFLNILEECKRIKVKH  120
            LE+ +++  +F ++QP VV+NL+AQAGVRYS+ NP++Y+DSNI GF+NILE  +++++++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  121  LIYASTSSVYGINDKLPFATEQPVDHPISVYAATKRANELFAHTYSHLFGLPTTGLRFFT  180
            LIYAS+SSVYG N   PF+T + +DHP+S+YAATK++NEL AHTYSHL+ LPTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  181  VYGPWGRPDMALFLFTKSILNNEPIKIFNYGLMKRDFTYVDDIIESIVRLIPLPPVPN--  238
            VYGPWGRPDMALF FTK+I+N+++I ++N G M RDFTYVDDI+E+I RL+  P+ PN  
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  239  -SSCNLQPNQSKAPFQIFNIGNNSPVNLIKFIDAIEEKLGMKAKKEFLPLQEGDVPETFA  297
             S+ + +P  S AP++++NIGNNSPV L+ F++AIE+KLG  A+K+++ LQ GDVPET+A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  298  DVEDLYSKINFRPKTSVEEGIGKFIDWYKDYY  329
            +V+DL+  I+F+P T++++G+ KF+DWY +YY
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

189) Cyan7425_3805 in NC_011884


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  350 bits (1316),  Expect = 4e-98, Method: Compositional matrix adjust.
 Identities = 191/333 (58%), Positives = 274/333 (83%), Gaps = 1/333 (0%)

Query  3    RILVTGAAGFIGFHLSQKLLRQGDQVIGLDNLNSYYDVNLKKDRLAQLLPQENFSFYQLD  62
            +IL+TG+AGFIG HL++KL++QG+ VIG+D++N YY V+LK DRL  +  +ENF+F ++ 
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKVK  60

Query  63   LSDRQGMADLFAREDIDIVVNLAAQAGVRYSLENPHTYVDSNVVGFLNILEGCRHRGIQH  122
            L + ++++ +F  E+ ++VVNLAAQAGVRYS+ENP+TY+DSN+VGF+NILE  RH  IQ+
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  123  LVFASSSSVYGANTKLPFSVHDLVDHPISLYAATKKANELMAHTYSHLFGLPVTGLRFFT  182
            L++ASSSSVYGANT  PFS  D +DHP+SLYAATKK+NELMAHTYSHL+ LP TGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  183  VYGPWGRPDMAPMQFARSILAGEPINVFNYGKMRRDFTYIDDIVNGTIQTIAQIPTPNPH  242
            VYGPWGRPDMA  +F+++I+ +++I+V+N G+M RDFTY+DDIV++  + + + ++PN +
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  243  WSGHSPDPATSKAPYRIYNIGNHQSVELLHFISLLEQYLNKPAQKNFLPLQPGDVLETHA  302
            WSG  PDP++S APY++YNIGN+ +V L++F+  +E+ L K A+KN++ LQPGDV ET A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  303  DISDLVQDVGFHPGTPIEVGVERFVEWYRHYYQ  335
            ++ DL +D++F P T I+ GV++FV+WY +YY+
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

190) Sbal223_4274 in NC_011663


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  350 bits (1316),  Expect = 4e-98, Method: Compositional matrix adjust.
 Identities = 191/335 (58%), Positives = 263/335 (79%), Gaps = 1/335 (0%)

Query  1    MKYLVTGAAGFIGAKVSERLCLLGHEVIGIDNLNDYYDVNLKLARLDLLQTLDNFHFIKL  60
            MK L+TG+AGFIG+ ++ +L   GH VIG+D++NDYY V+LK  RL  +   +NF F K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DLADREGIAALFARHAFQRVIHLAAQAGVRYSLDNPLAYADSNLIGHLTILEGCRHHKIE  120
             L + ++++ +F  +  + V++LAAQAGVRYS++NP +Y DSN++G + ILE  RH +I+
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGLNQKMPFSTEDSIDHPISLYAATKKANELMSHTYSHLYQLPTTGLRFF  180
            +L+YASSSSVYG N   PFST D+IDHP+SLYAATKK+NELM+HTYSHLY+LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTKAILAGEVIDVYNHGDLSRDFTYIDDIVEGIIRVQAKPPRPNT  240
            TVYGPWGRPDMALFKFTKAI+ ++ IDVYNHG++ RDFTY+DDIVE+I R+  KP+ PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWTVEAGTPATSSAPYRVFNIGNGSPVQLLDFITALEDALGIKANKNFLPMQPGDVHSTW  300
            +W+     P++S APY+V+NIGN SPV+L++F+ A+E+ LG  A KN++ +QPGDV  T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTSDLFDAVGYKPLMDINTGVAQFVDWYRQFYNR  335
            A+  DLF  +++KP   I+ GV +FVDWY ++Y++
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

191) Tola_2856 in NC_012691


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  350 bits (1316),  Expect = 4e-98, Method: Compositional matrix adjust.
 Identities = 190/334 (57%), Positives = 265/334 (80%), Gaps = 1/334 (0%)

Query  1    MKYLVTGATGFIGSNVVQRLCNAGHDVIGIDNLNDYYEVSLKEARLDLLSKFKNFRFIKL  60
            MK L+TG++GFIGS++ ++L + GH VIG+D++NDYY VSLKE RL  ++K  NF F K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DLADRAGIAELFAKEKFQRVIHLAAQAGVRYSLDNPMAYADSNMIGHLTILEGCRHNSVE  120
             L +  +++ +F  E+ + V++LAAQAGVRYS++NP +Y DSN++G + ILE  RH +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGLNSKLPFSTADSVDHPVSLYAATKKANELMAHTYSHLYGIPTTGLRFF  180
            +L+YASSSSVYG N+  PFST+D++DHP+SLYAATKK+NELMAHTYSHLY +PTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTKAILAGKAIDVYNNGNLSRDFTYIDDIVEGIIRIADVVPKAQE  240
            TVYGPWGRPDMALFKFTKAI+ ++AIDVYN+GN+ RDFTY+DDIVE+I R+    + ++ 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  GWTPETGSPANSSAPYRVYNIGNGSPVKLLDFIEALETSLGMVAEKNMLPMQPGDVHATW  300
             W+     P++S APY+VYNIGN SPV+L++F+EA+E  LG  A KN + +QPGDV  T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  AETEDFFAATGYRPQVGVQEGVARFVEWYKSYYR  334
            A+ +D+F   +++P+  +Q+GV +FV+WY  YY+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

192) OCA4_c26380 in NC_017538


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  350 bits (1316),  Expect = 4e-98, Method: Compositional matrix adjust.
 Identities = 186/333 (56%), Positives = 264/333 (80%), Gaps = 1/333 (0%)

Query  6    TILVTGAAGFIGFHVAQRLLQAGHEVIGLDNINDYYDPALKEARLAILKNARGFAFEKID  65
             IL+TG+AGFIG H+A++L++ GH VIG+D+INDYY  +LKE RL  + +   F+F+K+ 
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKVK  60

Query  66   LADRAAVRALFETHRFPLVIHLAAQAGVRYSIDHPNVYIDSNLQGFANILEGCRHNGCEH  125
            L +   +  +F  ++  +V++LAAQAGVRYSI++P  YIDSN+ GF NILE  RH   ++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  126  LLFASSSSVYGANTKLPFSEHDSVNHPISLYAASKRANELMAHTYSHLYGLPATGLRFFT  185
            L++ASSSSVYGANT  PFS  D+++HP+SLYAA+K++NELMAHTYSHLY LP+TGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  186  VYGPWGRPDMAMYLFANAIVADKPIRLFNNGDMLRDFTYVDDVTEAVVRLAQRPAKPNPA  245
            VYGPWGRPDMA++ F++AIV D++I ++N+G+M+RDFTYVDD+ EA+ RL ++PA PN  
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  246  WNPEAPDPATSHAPWRIYNIGNNKPEKLMDLVAAMERELGRTARKELLPMQAGDVYATYA  305
            W+   PDP++S AP ++YNIGNN P +LM++V A+E  LG+ ARK+ + +Q+GDV  TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  306  DIEDLRREVDFRPDTPLADGVARFVAWYRQYHR  338
            +++DL R++DF+P+T + DGV +FV WY +Y +
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

193) OCAR_5337 in NC_011386


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  350 bits (1316),  Expect = 4e-98, Method: Compositional matrix adjust.
 Identities = 186/333 (56%), Positives = 264/333 (80%), Gaps = 1/333 (0%)

Query  6    TILVTGAAGFIGFHVAQRLLQAGHEVIGLDNINDYYDPALKEARLAILKNARGFAFEKID  65
             IL+TG+AGFIG H+A++L++ GH VIG+D+INDYY  +LKE RL  + +   F+F+K+ 
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKVK  60

Query  66   LADRAAVRALFETHRFPLVIHLAAQAGVRYSIDHPNVYIDSNLQGFANILEGCRHNGCEH  125
            L +   +  +F  ++  +V++LAAQAGVRYSI++P  YIDSN+ GF NILE  RH   ++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  126  LLFASSSSVYGANTKLPFSEHDSVNHPISLYAASKRANELMAHTYSHLYGLPATGLRFFT  185
            L++ASSSSVYGANT  PFS  D+++HP+SLYAA+K++NELMAHTYSHLY LP+TGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  186  VYGPWGRPDMAMYLFANAIVADKPIRLFNNGDMLRDFTYVDDVTEAVVRLAQRPAKPNPA  245
            VYGPWGRPDMA++ F++AIV D++I ++N+G+M+RDFTYVDD+ EA+ RL ++PA PN  
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  246  WNPEAPDPATSHAPWRIYNIGNNKPEKLMDLVAAMERELGRTARKELLPMQAGDVYATYA  305
            W+   PDP++S AP ++YNIGNN P +LM++V A+E  LG+ ARK+ + +Q+GDV  TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  306  DIEDLRREVDFRPDTPLADGVARFVAWYRQYHR  338
            +++DL R++DF+P+T + DGV +FV WY +Y +
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

194) OCA5_c26390 in NC_015684


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  350 bits (1316),  Expect = 4e-98, Method: Compositional matrix adjust.
 Identities = 186/333 (56%), Positives = 264/333 (80%), Gaps = 1/333 (0%)

Query  6    TILVTGAAGFIGFHVAQRLLQAGHEVIGLDNINDYYDPALKEARLAILKNARGFAFEKID  65
             IL+TG+AGFIG H+A++L++ GH VIG+D+INDYY  +LKE RL  + +   F+F+K+ 
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKVK  60

Query  66   LADRAAVRALFETHRFPLVIHLAAQAGVRYSIDHPNVYIDSNLQGFANILEGCRHNGCEH  125
            L +   +  +F  ++  +V++LAAQAGVRYSI++P  YIDSN+ GF NILE  RH   ++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  126  LLFASSSSVYGANTKLPFSEHDSVNHPISLYAASKRANELMAHTYSHLYGLPATGLRFFT  185
            L++ASSSSVYGANT  PFS  D+++HP+SLYAA+K++NELMAHTYSHLY LP+TGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  186  VYGPWGRPDMAMYLFANAIVADKPIRLFNNGDMLRDFTYVDDVTEAVVRLAQRPAKPNPA  245
            VYGPWGRPDMA++ F++AIV D++I ++N+G+M+RDFTYVDD+ EA+ RL ++PA PN  
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  246  WNPEAPDPATSHAPWRIYNIGNNKPEKLMDLVAAMERELGRTARKELLPMQAGDVYATYA  305
            W+   PDP++S AP ++YNIGNN P +LM++V A+E  LG+ ARK+ + +Q+GDV  TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  306  DIEDLRREVDFRPDTPLADGVARFVAWYRQYHR  338
            +++DL R++DF+P+T + DGV +FV WY +Y +
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

195) Hneap_1011 in NC_013422


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  350 bits (1313),  Expect = 7e-98, Method: Compositional matrix adjust.
 Identities = 195/334 (59%), Positives = 267/334 (80%), Gaps = 1/334 (0%)

Query  1    MRVLVTGAAGFIGSSTALRLLARGDTVLGIDNLNDYYDVNLKKARLARLDAHERFAFIEM  60
            M++L+TG+AGFIGS  A +L+ +G+ V+G+D++NDYY V+LK  RL  + + E F+F  +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  61   DISDRPAIERLFAEQKIDRVVHLAAQAGVRYSIENPHAYVESNLVGFVNILEGCRHASVG  120
             + +   + ++F +++ + VV+LAAQAGVRYSIENP++Y++SN+VGF+NILE  RH ++ 
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGANESLPFSVHDNIDHPLSLYAATKKANELMAHTYSSLYQLPTTGLRFF  180
            +L+YASSSSVYGAN S PFS  DNIDHPLSLYAATKK+NELMAHTYS LY+LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTKAILAGEPIDVFNYGKHRRDFTYIDDIVEGVIRTLDHTAESNP  240
            TVYGPWGRPDMALFKFTKAI+ +++IDV+N G+  RDFTY+DDIVE++ R +   A +N 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  NWNGAKPDPGTSRAPWRVYNIGNSQPVELLTYIECIEQAIGKKAELNLLPMQPGDVPDTF  300
            +W+GA PDPG+S AP +VYNIGN+ PV L+ ++E IE+ +GK A  N + +QPGDVP+T+
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADVADLVADVGYQPSTPVDVGVRNFVDWYRSYYS  334
            A+V DL  D++++P T ++ GV +FVDWY  YY 
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

196) Rfer_0656 in NC_007908


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  350 bits (1313),  Expect = 7e-98, Method: Compositional matrix adjust.
 Identities = 197/334 (59%), Positives = 271/334 (82%), Gaps = 1/334 (0%)

Query  1    MKILLTGAAGFIGMTTALRLLARGDEVLGLDNLNDYYDVTLKENRLKRLSPHAGFRFVKM  60
            MKIL+TG+AGFIG   A +L+ +G+ V+G+D++NDYY V+LKE+RLK ++    F F K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG-KENFTFNKV  59

Query  61   DVADRQGMAQLFADEKFDRVIHLAAQAGVRYSLQNPHAYIDSNIVGFMNVLEACRHTQVQ  120
             + + ++++++F DE+ + V++LAAQAGVRYS++NP++YIDSNIVGFMN+LE  RH ++Q
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGGNTNMPFSEHDSVDHPVSLYAATKKANELMAHTYSHLYGLPTTGLRFF  180
            +L+YASSSSVYG+NT+ PFS  D++DHP+SLYAATKK+NELMAHTYSHLY LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFLFTKAILEGRPIDVFNYGQMQRDFTFVDDIVEGVVRVLDRVACPNP  240
            TVYGPWGRPDMALF FTKAI+++++IDV+N G+M RDFT+VDDIVE++ R++ + A PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  VYDPARADPATSNAPYRVFNIGNNKPVPLLDFIACIEEALGRKAEKNLLPLQDGDVPATY  300
                A +DP++S APY+V+NIGNN PV L++F+  IE+ LG+ A KN + LQ GDVP TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ANTDALNDWVGFVPGTPIEQGIARFVAWYRDYYQ  334
            AN D L   ++F P T I++G+ +FV WY +YY+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

197) CbuG_1157 in NC_011527


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  350 bits (1313),  Expect = 7e-98, Method: Compositional matrix adjust.
 Identities = 184/333 (56%), Positives = 271/333 (82%), Gaps = 1/333 (0%)

Query  6    MRTLVTGCAGFIGFHLTKRLLARGDHILGLDNLNDYYDVNLKEARLAQLKEFPHFSFHKL  65
            M+ L+TG AGFIG HL+K+L+ +G+ ++G+D++NDYY V+LKE RL  +    +F+F+K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  66   DLADRQGMTDLFQKHLFDTVVHLAAQAGVRYSLTNPYAYVDSNLVGFAHILEGCRHQSVK  125
             L + ++++ +F  +  + VV+LAAQAGVRYS+ NP +Y+DSN+VGF +ILE  RH +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  126  HLVFASSSSVYGANEKYPFSESDNVDHPIALYAASKKANELMAHSYAHLFQLPCTGLRFF  185
            +L++ASSSSVYGAN   PFS SDN+DHP++LYAA+KK+NELMAH+Y+HL++LP TGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  186  TVYGPWGRPDMALFKFTRNLLADKPIDVYNHGKMSRDFTYIDDIVDGILLTLDHPPEPNS  245
            TVYGPWGRPDMALFKFT+ ++ D++IDVYNHG+M RDFTY+DDIV++I   +  P+ PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  246  AYSANQANPAKSNAPYRIYNIGSNNPILLTDFIAILEKTLNKKAIKNFLPLQPGDVPETY  305
              S+ +++P+ S APY++YNIG+N+P+ L +F+  +E+ L K A KN++ LQPGDVPETY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  306  ADVSQLEKDFQYRPRTPLQKGVKNFVEWYLQYF  338
            A+V +L +D++++P T +Q GV++FV+WYL+Y+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

198) Cthe_0229 in NC_009012


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  349 bits (1310),  Expect = 1e-97, Method: Compositional matrix adjust.
 Identities = 201/332 (61%), Positives = 271/332 (82%), Gaps = 1/332 (0%)

Query  5    ILVTGAAGFIGFHLVQRLLKEGCNVVGIDNLNEYYDVklkkdrlkllSENKNFVFRKVDI  64
            IL+TG+AGFIG HL ++L+K+G  V+G+D++N+YY V LK DRLK ++ + NF F KV +
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKVKL  61

Query  65   KNKKAVDRIFETYRPSYVINLAAQAGVRYSIENPYAYVDSNLVGFVNILEACRKYPVKHL  124
             N   + ++F   +P  V+NLAAQAGVRYSIENP +Y+DSN+VGF+NILE  R + +++L
Sbjct  62   ENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNL  121

Query  125  IYASSSSVYGGNKVSPFSTRHNVDHPVSLYAATKKSNELLAHTYSHLFGIPTTGLRFFTV  184
            IYASSSSVYG+N   PFST +N+DHP+SLYAATKKSNEL+AHTYSHL+ +PTTGLRFFTV
Sbjct  122  IYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTV  181

Query  185  YGPWGRPDMAYFSFTKDILSGNPIKVFNYGKMERDFTYIDDVVEGIVKLIDRIPTPNENW  244
            YGPWGRPDMA F FTK I+++++I V+N G+M RDFTY+DD+VE+I +L+ + ++PN +W
Sbjct  182  YGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEW  241

Query  245  DETKDDISTSFAPYKIYNIGNNNPVPLMNFISVLESALGKVAKKVYLDLQPGDVLRTYAD  304
              +  D ++S+APYK+YNIGNN+PV LM+F+  +E+ LGK A+K Y+DLQPGDV  TYA+
Sbjct  242  SGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYAN  301

Query  305  ISDLERDINFKPSTSIEDGLRKFVQWYKEYYK  336
            + DL RDI+FKP T+I+DG+ KFV+WY EYYK
Sbjct  302  VDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

199) Clo1313_1999 in NC_017304


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  349 bits (1310),  Expect = 1e-97, Method: Compositional matrix adjust.
 Identities = 201/332 (61%), Positives = 271/332 (82%), Gaps = 1/332 (0%)

Query  5    ILVTGAAGFIGFHLVQRLLKEGCNVVGIDNLNEYYDVklkkdrlkllSENKNFVFRKVDI  64
            IL+TG+AGFIG HL ++L+K+G  V+G+D++N+YY V LK DRLK ++ + NF F KV +
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKVKL  61

Query  65   KNKKAVDRIFETYRPSYVINLAAQAGVRYSIENPYAYVDSNLVGFVNILEACRKYPVKHL  124
             N   + ++F   +P  V+NLAAQAGVRYSIENP +Y+DSN+VGF+NILE  R + +++L
Sbjct  62   ENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNL  121

Query  125  IYASSSSVYGGNKVSPFSTRHNVDHPVSLYAATKKSNELLAHTYSHLFGIPTTGLRFFTV  184
            IYASSSSVYG+N   PFST +N+DHP+SLYAATKKSNEL+AHTYSHL+ +PTTGLRFFTV
Sbjct  122  IYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTV  181

Query  185  YGPWGRPDMAYFSFTKDILSGNPIKVFNYGKMERDFTYIDDVVEGIVKLIDRIPTPNENW  244
            YGPWGRPDMA F FTK I+++++I V+N G+M RDFTY+DD+VE+I +L+ + ++PN +W
Sbjct  182  YGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEW  241

Query  245  DETKDDISTSFAPYKIYNIGNNNPVPLMNFISVLESALGKVAKKVYLDLQPGDVLRTYAD  304
              +  D ++S+APYK+YNIGNN+PV LM+F+  +E+ LGK A+K Y+DLQPGDV  TYA+
Sbjct  242  SGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYAN  301

Query  305  ISDLERDINFKPSTSIEDGLRKFVQWYKEYYK  336
            + DL RDI+FKP T+I+DG+ KFV+WY EYYK
Sbjct  302  VDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

200) capI in NC_020409


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  349 bits (1311),  Expect = 1e-97, Method: Compositional matrix adjust.
 Identities = 195/335 (59%), Positives = 270/335 (81%), Gaps = 1/335 (0%)

Query  4    MKILVTGAAGFIGFHLSKRFTAAGHEVVGLDNLDPYYDINLKKARLAILEESSLFRHVNI  63
            MKIL+TG+AGFIG HL+K++   GH V+G+D+++ YY ++LK  RL  +   + F   ++
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKEN-FTFNKV  59

Query  64   DLQDDQPMSDLFKEEKFTHVVNLAAQAGVRYSIENPKAYINSNIVGFLNVLEGCRHNEVK  123
             L++ + +S +F +E+   VVNLAAQAGVRYSIENP++YI+SNIVGF+N+LE  RH +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  124  HLVYASSSSVYGMNTTMPLSPHEGVDHPMSLYAATKKSSEMMAHSYSNLYDLPTTGLRFF  183
            +L+YASSSSVYG NT+ P+S  + +DHP+SLYAATKKS+E+MAH+YS+LY+LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  184  TVYGPWGRPDMALYLFTKNIIEEKPINVFNYGKMRRDFTYVDDIVEGIVRVTGNIATPNP  243
            TVYGPWGRPDMAL+ FTK I+++++I+V+N G+M RDFTYVDDIVE+I R+  + A+PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  244  EWNGVTHDPCTSSVPYRVYNIGNNSVVELSRYIEVIEEVVGKKAIYNYMPMQPGDVPATE  303
            EW+G   DP +S  PY+VYNIGNNS V L  ++E IE+ +GK A  NYM +QPGDVP T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  304  ADVEDLVRDVGFKPDTTVEVGIKNFVDWYRDYYGK  338
            A+V+DL RD++FKP+TT++ G+++FVDWY +YY K
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

201) Rahaq2_2030 in NC_016818


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  349 bits (1310),  Expect = 1e-97, Method: Compositional matrix adjust.
 Identities = 197/334 (59%), Positives = 267/334 (80%), Gaps = 1/334 (0%)

Query  1    MKYLVTGAAGFIGFYVSQRLLAAGHCVIGIDNLNDYYDVNLKLARLAQLENKDGFEFIKL  60
            MK L+TG+AGFIG  ++++L+  GH VIG+D++NDYY V+LK  RL  +  K+ F F K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  61   DLADREGMSALFAEQRFERVIHLAAQAGVRYSIENPLAYADSNLIGFVNILEGCRHNKVG  120
             L + +++S +F +++ E V++LAAQAGVRYSIENP +Y DSN++GF+NILE  RH ++ 
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLLYASSSSVYGLNKKQPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYKIPTTGLRFF  180
            +L+YASSSSVYG N  +PFST D++DHP+SLYAATKK+NELMAHTYSHLY++PTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTKAILAGQNIDVYNHGEMRRDFTYIDDITEAIVRLQDVIPHADP  240
            TVYGPWGRPDMALFKFTKAI+ +Q IDVYNHG+M RDFTY+DDI EAI RL    + ++ 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWTVENGSPASSSAPYCVYNIGNSNPVKLMTYISALEKALGRVAGKNMLPMQPGDVHETS  300
            +W+  +  P+SS APY VYNIGN++PV+LM ++ A+E+ LG+ A KN + +QPGDV ET 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTLPLQKAIGFKPETPVEQGVLRFVDWYRDFYQ  334
            A+   L + I+FKPET +++GV +FVDWY ++Y+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

202) XNC1_2486 in NC_014228


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  349 bits (1311),  Expect = 1e-97, Method: Compositional matrix adjust.
 Identities = 191/335 (58%), Positives = 269/335 (81%), Gaps = 1/335 (0%)

Query  1    MKFLVTGSAGFIGFHVSQRLLNMGYEVVGIDNLNDYYDVKLKQARLNLLLPHANFRFEKL  60
            MK+L+TG+AGFIG H++++L++ G  V+G+D++NDYY V LK+ RL+ +    NF F+K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  61   DLADRVATPELFAKHQFQRVIHLGAQAGVRYSIQNPMAYIDANIIGHINILEGCRHHHVE  120
             L +    + +F  +Q + V++L+AQAGVRYSI+NP +YID+NI+G +NILE  RH +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLLYASSSSVYGLNKKQPFSTADSVDHPISLYAATKKADELMSHSYSHLYQLPTTGLRFF  180
            +L+YASSSSVYG N  +PFST+D++DHP+SLYAATKK++ELM+H+YSHLY+LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTKAMSEGESIDVYNHGNMVRDFTYIDDIVESIIRLQNIIPIRNE  240
            TVYGPWGRPDMALFKFTKA+ ++++IDVYNHGNM+RDFTY+DDIVE+I RL +  +  N 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  NWSVEDGQIFASSAPYCIYNIGNGQPTKLGAFIEAIEVSLGVEAKKNFMEIQDGDVLSTC  300
            +WS  D +  +S APY +YNIGN  P +L  F+EAIE  LG EA+KN+M++Q GDV  T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADSSALYDKIGFSPNTPVKEGVKRFVDWYLDFYQK  335
            A+   L+  I+F P+T +++GV++FVDWYL++Y+K
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

203) Sputw3181_0062 in NC_008750


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  349 bits (1309),  Expect = 2e-97, Method: Compositional matrix adjust.
 Identities = 192/335 (58%), Positives = 262/335 (79%), Gaps = 1/335 (0%)

Query  1    MKYLVTGAAGFIGAKVSERLCLLGHEVIGIDNLNDYYDVNLKLARLDLLQTLDNFHFIKL  60
            MK L+TG+AGFIG+ ++ +L   GH VIG+D++NDYY V+LK  RL  +   +NF F K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DLADREGIAALFARHAFQRVIHLAAQAGVRYSLDNPLAYADSNLIGHLTILEGCRHHKIE  120
             L + ++++ +F  +  + V++LAAQAGVRYS++NP +Y DSN++G + ILE  RH +I+
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGLNQKMPFSTEDSIDHPISLYAATKKANELMSHTYSHLYQLPTTGLRFF  180
            +L+YASSSSVYG N   PFST D+IDHP+SLYAATKK+NELM+HTYSHLY+LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTKAILAGEVIDVYNHGDLSRDFTYIDDIVEGIIRVQAKPPRPNT  240
            TVYGPWGRPDMALFKFTKAI+ ++ IDVYNHG++ RDFTY+DDIVE+I R+  KP+ PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWTVEAGTPATSSAPYRVFNIGNGSPVQLLDFITALEDALGIKANKNLLPMQPGDVHSTW  300
            +W+     P++S APY+V+NIGN SPV+L++F+ A+E+ LG  A KN + +QPGDV  T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTSDLFDAVGYKPLMDINTGVAQFVDWYRQFYNK  335
            A+  DLF  +++KP   I+ GV +FVDWY ++Y+K
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

204) ETAC_05730 in NC_020796


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  349 bits (1311),  Expect = 9e-98, Method: Compositional matrix adjust.
 Identities = 183/334 (55%), Positives = 265/334 (80%), Gaps = 1/334 (0%)

Query  1    MRVLVTGCAGFIGANLCGRLLAAGHQVEGIDNLNDYYDVSLKQARLAPLQADANFTYHPI  60
            M++L+TG AGFIG++L  +L+  GH V G+D++NDYY VSLK+ RL ++ +  NFT++ +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  61   DIADSAAMAALFSVAHFDRVVHLAAQAGVRYSLTNPLSYAQSNLLGHVNVLEGCRHGKVG  120
             + +   ++ +F   + + VV+LAAQAGVRYS+ NP +Y +SN++G +N+LE  RH ++ 
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGLNNKVPFSTADRVDHPISLYAATKKSNELMAHSYSHLYGLPTTGLRFF  180
            +L+YASSSSVYG N   PFST+D +DHP+SLYAATKKSNELMAH+YSHLY LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTKNMLEGKPIDIYNHGDMQRDFTYIDDIVEGVLRIMEVVPQPNA  240
            TVYGPWGRPDMALFKFTK ++++++ID+YNHG+M RDFTY+DDIVE++ R++   + PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWRVEQGSPAASSAPYRIYNIGHGSPVRLMDYITALEEALGIEALKHFMPMQPGDVYQTY  300
            +W   +  P++S APY++YNIG+ SPVRLM+++ A+E+ LG EA K++M +QPGDV +TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTEDLFAVTGYRPQMGVKAGVQAFVNWYRDYYN  334
            A+ +DLF   +++P+  ++ GV+ FV+WY +YY+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

205) ECENHK_14545 in NC_018405


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  348 bits (1308),  Expect = 2e-97, Method: Compositional matrix adjust.
 Identities = 199/333 (60%), Positives = 275/333 (83%), Gaps = 0/333 (0%)

Query  1    MKFLVTGAAGFIGSHVSKRLLDAGHQVVGIDNLNDYYDVNLKLARLDLLKSDNFSFHKLD  60
            MK+L+TG+AGFIGSH++K+L+  GH V+G+D++NDYY V+LK  RL  +  +NF+F+K+ 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  61   LADREGMSALFADEKFDRVIHLAAQAGVRYSLDNPHAYAEANLVGHLNVLEGCRHNKVQH  120
            L + +++S +F DE+ + V++LAAQAGVRYS++NP++Y ++N+VG +N+LE  RH ++Q+
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  121  LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMSHTYSHLYNLPTTGLRFFT  180
            L+YASSSSVYG N   PFST D++DHP+SLYAATKK+NELM+HTYSHLYNLPTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  181  VYGPWGRPDMALFKFTKAMIEDKPIDVYNYGKMKRDFTYIDDIAEAIIRLQGVIPQADAD  240
            VYGPWGRPDMALFKFTKA+++D++IDVYN G+M RDFTY+DDI EAI RL    + ++ +
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  241  WTVETGSPATSSAPYRVYNIGNSSPVELMDYITaleealgkeaekNMMPIQPGDVLETSA  300
            W+     P++S APY+VYNIGN+SPV LM+++ A+E+ LGKEA KN M +QPGDV ET A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  301  DTKALYDVIGFKPQTSVKDGVKNFVDWYRAFYK  333
            +   L+  I+FKP+T+++DGV++FVDWY  +YK
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

206) Cpar_1802 in NC_011027


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  348 bits (1306),  Expect = 2e-97, Method: Compositional matrix adjust.
 Identities = 201/349 (58%), Positives = 272/349 (78%), Gaps = 16/349 (4%)

Query  1    MKILVTGTAGFIGFHLAERLAQRGDEVVGLDNINDYYDQNVKYGRLAFSGIDRDAIEEGK  60
            MKIL+TGTAGFIG HLA +L ++G+ V+G+D+INDYY  ++K +RL   +I+++      
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRL--KSIGKE------  52

Query  61   LVTSTKYPNYRFIKLDLEDKAAIDALFAAEQFDAVCNLAAQAGVRYSLTNPDAYIKSNIT  120
                    N+ F K+ LE+   +  +F  EQ + V NLAAQAGVRYS+ NP +YI SNI 
Sbjct  53   --------NFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIV  104

Query  121  GFINLLEACRHNKVGNLSYASSSSVYGLNERQPFSVHHNVDHPVSLYAASKKSNELMAHT  180
            GF+N+LE  RH ++ NL YASSSSVYG N  +PFS  +N+DHP+SLYAA+KKSNELMAHT
Sbjct  105  GFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHT  164

Query  181  YSHLFGIPTTGLRFFTVYGPWGRPDMALFLFTKAALEGRPIDVFNYGNMQRDFTYIDDII  240
            YSHL+ +PTTGLRFFTVYGPWGRPDMALF FTKA +++++IDV+N GNM RDFTY+DDI+
Sbjct  165  YSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIV  224

Query  241  EGVVRVIDNPAKSNPNWSGQNPDPGTSSAPYRVYNIGNNEPVRLLDFIEAIEKALGKTIE  300
            E++ R++ +PA +N +WSG +PDPG+S APY+VYNIGNN PVRL++F+EAIE+ LGK   
Sbjct  225  EAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEAR  284

Query  301  KNMLPIQPGDVPSTYADVTDLVEELGYRPATPVQEGINRFVAWYREFFN  349
            KN + +QPGDVP TYA+V DL  +++++P T +Q+G+N+FV WY E+++
Sbjct  285  KNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

207) HYPDE_38823 in NC_021172


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  348 bits (1308),  Expect = 2e-97, Method: Compositional matrix adjust.
 Identities = 192/333 (58%), Positives = 269/333 (81%), Gaps = 1/333 (0%)

Query  1    MKFLVTGAAGFIGFHTAMRLLERGDVVIGVDNVNSYYDPKLKEARLAKLEGRNGFSFHRL  60
            MK+L+TG+AGFIG H A +L+ +G+ VIGVD++N YY   LKE RL  + G++ F+F+++
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  61   NIADSEAMAALFRSERPDKVIHLAAQAGVRYGQENPNAYIESNIVGTQSILEGCRHNGVK  120
            ++ + + ++ +F  E+P+ V++LAAQAGVRY+ ENP +YI+SNIVG  +ILE  RH  ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVLASSSSVYGANTAMPFSVHDNVDHPLSLYAATKKANELAAHTYAYLYQIPVTALRFF  180
            +L+ ASSSSVYGANT+ PFS  DN+DHPLSLYAATKK+NEL AHTY+ LY++P T+LRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTRQILADEPIEVFNNGHHARDFTYIDDVVEGVLRTADKVAEPNP  240
            TVYGPWGRPDMALFKFT+ I+ D++I+V+N+G+  RDFTY+DD+VE++ R   K A PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWTGEKPDPATSMAPYRLYNIGNNSPVELMDFiaaieraigreaKKIFLPMQPGDVPKTF  300
            +W+G  PDP++S APY++YNIGNNSPV LM+F+ AIE  +G+EA+K ++ +QPGDVP T+
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADVDDLVRDVGFKPATPLSEGISRFVAWYRSYY  333
            A+VDDL RD++FKP T + +G+++FV WY  YY
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

208) wbnF in NC_010694


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  348 bits (1307),  Expect = 2e-97, Method: Compositional matrix adjust.
 Identities = 189/335 (57%), Positives = 263/335 (79%), Gaps = 1/335 (0%)

Query  1    MKYLVTGAAGFIGFHVIQRLLDAGHQVVGLDNLNDYYDVNLKTSRLALIADRSGFTFVKD  60
            MK L+TG+AGFIG H+ ++L+  GH V+G+D++NDYY V+LK  RL  I+ +  FTF K 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG-KENFTFNKV  59

Query  61   DLANREGMAELFRSHRFQRVIHLGGQAGVRYSLENPLSYADANLVGHLNILEGCRHNQVE  120
             L N ++++ +F  ++ + V++L++QAGVRYS+ENP +Y D+N+VG +NILE  RH +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLLYASSSSVYGLNRKMPFSTDDAVDHPVSLYAATKKANELMAHSYSHLYGIPTTGLRFF  180
            +L+YASSSSVYG N   PFST D +DHP+SLYAATKK+NELMAH+YSHLY +PTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTRAMMAGEKIDVYNHGQMRRDFTYIDDIVESIIRLQDVIPQPDA  240
            TVYGPWGRPDMALFKFT+A++ ++ IDVYNHG+M RDFTY+DDIVE+I RL    + P+ 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWTVEKGSPAASSAPYRVYNIGNSHPVTLMAYIEALEGALGMKADKNMLPMQSGDVAETS  300
            +W+     P++S APY+VYNIGN+ PV LM ++EA+E  LG  A KN + +Q+GDV+ET 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTRALFEVIGFRPQTSVEEGVARFVDWYRAFYQK  335
            A+   LF  I+F+P+T++++GV +FVDWY  +Y+K
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

209) Desaf_2415 in NC_016629


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  348 bits (1305),  Expect = 3e-97, Method: Compositional matrix adjust.
 Identities = 191/333 (58%), Positives = 263/333 (79%), Gaps = 1/333 (0%)

Query  1    MTVLVTGAAGFIGSHVCEKLLTQGHEVVGLDNLTPYYSVQLKKDRLAKLLSLKGFTFLPL  60
            M +L+TG+AGFIGSH+  KL+ QGH V+G+D++  YYSV LK DRL K ++   FTF  +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRL-KSIGKENFTFNKV  59

Query  61   DIKEREATARLFAEQRFDYAINLAAQPGVRYSIEHPESYVDSNLVGFGNILEGCRHSGVK  120
             + + +  +++F +++ +  +NLAAQ+GVRYSIE+P +Y+DSN+VGF NILE  RH  ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGLNTRMPFSVHDNVDHPISLYAATKKANELMAHCYSHLYRLPTTGLRFF  180
            +L+YASSSSVYG NT  PFS  DN+DHP+SLYAATKK+NELMAH YSHLY LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMSHFLFVKAIFEGKPIQVFNHGKMRRDFTYIDDIVEGVVRVMDAIPEPNL  240
            TVYGPWGRPDM+ F F KAI ++++I+V+NHG+M RDFTY+DDIVE++ R++   + PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  AWDGQRPDPGTSPAPYRIFNIGNNNSIELEEYITAMEEAIGKPALRNYVDMQPGDVQATY  300
             W G  PDPG+S APY+++NIGNN+++ L E++ A+E+ +GK A +NY+D+QPGDV  TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADVDDLAKAVGFRPTTDIRTGIAKFVEWYRRYY  333
            A+VDDL + ++F+P T I+ G+ KFV+WY  YY
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

210) Glo7428_2230 in NC_019745


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  348 bits (1306),  Expect = 3e-97, Method: Compositional matrix adjust.
 Identities = 193/333 (58%), Positives = 270/333 (82%), Gaps = 3/333 (0%)

Query  1    MRVLVTGVAGFVGFHLAQRLLSEGIQVYGIDNLNEYYDVKLKKDRLAQINYHPNFSFQFL  60
            M++L+TG AGF+G HLA++L+ +G  V G+D++N+YY V LK DRL  I    NF+F+ +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG-KENFTFNKV  59

Query  61   DLIDREGMFDLFQNVEFDYVVNLAAQAGVRYSLENPFAYVDSNLSGFVNLLEACRRSHIK  120
             L + +++  +F + + + VVNLAAQAGVRYS+ENP +Y+DSN+ GF+N+LE  R+ +I+
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVFASSSSVYGANKKVPFSVTDNVDHPISLYAASKKANELVAHVYSHLYNLPTTGLRFF  180
            +L++ASSSSVYGAN   PFS +DN+DHP+SLYAA+KK+NEL+AH YSHLYNLPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMAYFKFVQAIAAGKPIDVYNFGKMQRDFTYIDDVIEGVVRVMHKPPQPQK  240
            TVYGPWGRPDMA FKF +AI  +++IDVYN G+M RDFTY+DD++E++ R++ KP+ P+K
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  NLSTDAQDEST--VPYKLYNIGNNSPVELMKFIEIIETALGKKAQKNFLPMQPGDVPATY  298
            + S    D ++   PYK+YNIGNNSPV LM F+E IE  LGK A+KN++ +QPGDVP TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  299  ADVEDLMKDVGFKPNTSIEEGMHKFIQWYTEYY  331
            A+V+DL +D++FKP+T+I++G++KF++WY EYY
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

211) A3UG_15070 in NC_018079


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  347 bits (1303),  Expect = 4e-97, Method: Compositional matrix adjust.
 Identities = 199/333 (60%), Positives = 272/333 (82%), Gaps = 0/333 (0%)

Query  1    MKFLVTGAAGFIGSHVSQRLLDAGHHVVGIDNLNDYYDVNLKLARLDLLKSGNFTFHKME  60
            MK+L+TG+AGFIGSH++++L+  GH V+G+D++NDYY V+LK  RL  +   NFTF+K+ 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  61   LADREAMAALFATEKFDRVIHLAAQAGVRYSLENPHAYADANLVGHLNVLEGCRHNNVQH  120
            L + + ++ +F  E+ + V++LAAQAGVRYS+ENP++Y D+N+VG +N+LE  RH N+Q+
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  121  LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMSHTYSHLYNLPTTGLRFFT  180
            L+YASSSSVYG N   PFST D++DHP+SLYAATKK+NELM+HTYSHLYNLPTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  181  VYGPWGRPDMALFKFTKAMIEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPQADAD  240
            VYGPWGRPDMALFKFTKA++++++IDVYN G+M RDFTY+DDI EAI RL    + ++ +
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  241  WTVETGSPATSSAPYRVYNIGNSSPVELMDYITaleealgkeaekNMMPIQPGDVLETSA  300
            W+     P++S APY+VYNIGN+SPV LM+++ A+E+ LGKEA KN M +QPGDV ET A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  301  DTKALYDVIGFKPQTSVKDGVKNFVDWYRAFYK  333
            +   L+  I+FKP+T+++DGV++FVDWY  +YK
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

212) capD1 in NC_012108


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  347 bits (1304),  Expect = 4e-97, Method: Compositional matrix adjust.
 Identities = 193/334 (58%), Positives = 273/334 (82%), Gaps = 6/334 (1%)

Query  22   MKIMITGAAGFIGFFLGKKLLENGHTVFGVDNLNDYYEVALKKGRLEILNRFDSFSFERL  81
            MKI+ITG+AGFIG  L+KKL+ +GH V+GVD++NDYY V+LK +RL  + + ++F+F+++
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  82   DISDRSGVERLFGANRFDVVVNLAAQAGVRYSIDNPHAYVDSNLVGFANILEGCRHGRVG  141
             + +  ++ ++F  ++ +VVVNLAAQAGVRYSI+NP++Y+DSN+VGF NILE  RH  + 
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  142  HLVYASSSSVYGQNKKMPFSVTDSVDHPVSLYAATKKSNELMAHAYAHLYGIPMTGLRFF  201
            +L+YASSSSVYG N   PFS +D++DHP+SLYAATKKSNELMAH+Y+HLY +P TGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  202  TVYGPWGRPDMAYFKFTRAILAGEPIDVYNHGNMRRDFTYIDDIVKGVVKVMEKPPVP--  259
            TVYGPWGRPDMA FKFT+AI+ +++IDVYNHGNM RDFTY+DDIV ++ +++ KP+ P  
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  260  --GESLADSGTS-APYRLYNIGNNQPVELGHFIEVLEKHLGQKAVKNMLPMQPGDVPETY  316
              + + +D+G+S APY++YNIGNN PV L +F+E +E+ LG+ A KN + +QPGDVPETY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  317  ADIETLVRDTGFTPETSIDEGLGRFVQWYRKFYR  350
            A+++ L RD +F PET+I++G+ +FV+WY  +Y+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

213) Shew185_4329 in NC_009665


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  347 bits (1304),  Expect = 4e-97, Method: Compositional matrix adjust.
 Identities = 192/335 (58%), Positives = 263/335 (79%), Gaps = 1/335 (0%)

Query  1    MKYLVTGAAGFIGAKVSERLCLLGHEVIGIDNLNDYYDVNLKLARLDLLQTLNNFHFIKL  60
            MK L+TG+AGFIG+ ++ +L   GH VIG+D++NDYY V+LK  RL  +   +NF F K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DLADREGIAALFALHAFQRVIHLAAQAGVRYSLDNPLAYADSNLIGHLTILEGCRHHKIE  120
             L + ++++ +F  +  + V++LAAQAGVRYS++NP +Y DSN++G + ILE  RH +I+
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGLNQKMPFSTEDSIDHPISLYAATKKANELMSHTYSHLYQLPTTGLRFF  180
            +L+YASSSSVYG N   PFST D+IDHP+SLYAATKK+NELM+HTYSHLY+LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTKAILAGEVIDVYNHGDLSRDFTYIDDIVEGIIRVQAKPPRPNT  240
            TVYGPWGRPDMALFKFTKAI+ ++ IDVYNHG++ RDFTY+DDIVE+I R+  KP+ PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWTVEAGTPATSSAPYRVFNIGNGSPVQLLDFITALEDALGIKANKNLLPMQPGDVHSTW  300
            +W+     P++S APY+V+NIGN SPV+L++F+ A+E+ LG  A KN + +QPGDV  T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTNDLFDAVGYKPLVDINTGVMQFVDWYRQFYNK  335
            A+ +DLF  +++KP   I+ GV +FVDWY ++Y+K
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

214) Metev_1252 in NC_014253


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  346 bits (1301),  Expect = 7e-97, Method: Compositional matrix adjust.
 Identities = 205/350 (59%), Positives = 280/350 (80%), Gaps = 17/350 (4%)

Query  1    MKILITGTAGFIGFHLVKKLVNSEHEIIGLDNINDYYDVNLKYGRLEETGINSKKIEYNK  60
            MKILITGTAGFIG HL KKL++  H +IG+D+INDYY V+LK +RL   G +        
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE--------  52

Query  61   FVQSDLYPNYSFIKLNLEDKENIKFLFENEKFVVVCHLAAQAGVRYSITHPYSYIQSNIV  120
                    N++F K++LE+ +++  +F +E+  VV +LAAQAGVRYSI +P +YI+SNIV
Sbjct  53   --------NFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIV  104

Query  121  GFLNILESCRYNNIKHLVYASSSSVYGLNKKMPFSTQDNVDHPISLYASSKKSNELMAHT  180
            GF+NILE  R  NI++L+YASSSSVYG N   PFST DN+DHP+SLYA++KKSNELMAHT
Sbjct  105  GFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHT  164

Query  181  YSYLYNIPTTGLRFFTVYGPWGRPDMAYFKFTKSILDDRPINVYNYGDMQRDFTYVDDVV  240
            YS LYN+PTTGLRFFTVYGPWGRPDMA FKFTK+I++D++I+VYN G+M RDFTYVDD+V
Sbjct  165  YSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIV  224

Query  241  DGLIKILDNEPPSGNSDWSGEKPDPSSSTAPYRVYNIGNNNPVNLIDFINAIEKATGKEA  300
            +++ +++ + P+S N +WSG  PDP+SS APY+VYNIGNN+PV L++F++AIE+  GKEA
Sbjct  225  EAISRLVKK-PASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEA  283

Query  301  KKNYKPLQPGDVISTWADIDNLIKDFNYEPNTPVEKGIKKFVGWYRNFYN  350
            +KNY  LQPGDV  T A++D+L++D+++ P+T ++ G++KFV+WY ++Y+
Sbjct  284  RKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

215) plu2499 in NC_005126


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  346 bits (1301),  Expect = 7e-97, Method: Compositional matrix adjust.
 Identities = 189/335 (57%), Positives = 274/335 (82%), Gaps = 1/335 (0%)

Query  1    MKFLVTGAAGFIGFHVSQRLLQMGHEVVGIDNLNDYYDVNLKQARLDLLFDRSGFKFEKL  60
            MK+L+TG+AGFIG H++++L++ GH V+G+D++NDYY V+LK+ RL  + ++  F F+K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  61   DLADRIAIPDLFSRHQFQRVIHLGAQAGVRYSLQNPMAYIDSNIIGHINILEGCRHNNVE  120
             L +   ++ +F  +Q + V++L+AQAGVRYS++NP +YIDSNI+G +NILE  RH N++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLLYsssssVYGLNRKQPFSTNDSVDHPVSLYAATKKSDELMSHSYSHLYQLPTTGLRFF  180
            +L+Y+SSSSVYG N  +PFST+D++DHP+SLYAATKKS+ELM+H+YSHLY+LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTKAMLSGQPIDVYNHGNMVRDFTYIDDIVESIIRLQEIIPTSNE  240
            TVYGPWGRPDMALFKFTKA++++Q+IDVYNHGNM+RDFTY+DDIVE+I RL    +++N 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  GWMVEDGQISASSAPYCIYNIGNGQPTRLGDFIEAIEESLGIQAKKNFMPMQDGDVLSTC  300
             W   D + ++S APY +YNIGN  P RL +F+EAIE+ LG +A+KN+M +Q GDV  T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADSSGIVQKIGFAPNTSVKQGVKQFVEWYLSFYHQ  335
            A+  ++ + I+F P+T++++GV++FV+WYL +Y +
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

216) GTCCBUS3UF5_37230 in NC_016593


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  346 bits (1299),  Expect = 8e-97, Method: Compositional matrix adjust.
 Identities = 202/334 (61%), Positives = 277/334 (83%), Gaps = 1/334 (0%)

Query  1    MTILVTGAAGFIGMHFSKRLLEEGYEVVGIDNLNDYYDPklkedrllelkkYSRFTFVQL  60
            M IL+TG+AGFIG H++K+L+ +G  V+G+D++NDYY   LKEDRL  + K   FTF ++
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DLADREGLFALFNNYAFTHVVNLAAQAGVRYSLQNPYAYVDSNLVGFVNILEACRHNPVK  120
             L + ++L  +F +     VVNLAAQAGVRYS++NP +Y+DSN+VGF+NILE  RH  ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLIYASSSSVYGANAKMPFSTSDNVDHPVSLYAATKKANELMAHTYSHLYGIPTTGLRFF  180
            +LIYASSSSVYGAN+  PFSTSDN+DHP+SLYAATKK+NELMAHTYSHLY +PTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMAYFSFTKSILEGKPIKVFNYGNMKRDFTYIDDIVEGMVRLLDRPPLPNK  240
            TVYGPWGRPDMA F FTK+I+++++I V+N GNM RDFTY+DDIVE++ RL+ +P+ PNK
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  QWDRFHPDPSSSYAPYKIYNIGHNQPVKLLDFIQTLESLLGMEAKKEFLPMQLGDVEATY  300
            +W   +PDP+SSYAPYK+YNIG+N PV+L++F++++E+ LG EA+K+++ +Q GDV  TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADIDDLHQAVGFQPSTSIRDGLKKFVDWYKAYYQ  334
            A++DDL + ++F+P T+I+DG++KFVDWY  YY+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

217) AZKH_3775 in NC_020516


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  346 bits (1299),  Expect = 8e-97, Method: Compositional matrix adjust.
 Identities = 192/333 (58%), Positives = 265/333 (80%), Gaps = 1/333 (0%)

Query  1    MKILVTGAAGFIGMHASQVLLARGDEVVGIDNLNDYYDPQLKLDRLARLTPNPGFRFVKL  60
            MKIL+TG+AGFIG H ++ L+ +G+ V+G+D++NDYY   LK DRL  +  +  F F K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG-KENFTFNKV  59

Query  61   DVADRAGMERLFAEEKFDRVIHLAAQAGVRYSLQNPHAYIESNLVGFTNILEGCRHNKVQ  120
             + +  ++ ++F +E+ + V++LAAQAGVRYS++NP++YI+SN+VGF NILE  RH ++Q
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGGNTKMPFSEHDSVDHPVSLYAATKKANELMAHTYSHLYGLPTTGLRFF  180
            +L+YASSSSVYG+NT  PFS  D++DHP+SLYAATKK+NELMAHTYSHLY LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFLFTKAILEGRPIDVFNHGKMKRDFTYIDDIVEGVIRTLDRVAEADP  240
            TVYGPWGRPDMALF FTKAI+++++IDV+NHG+M RDFTY+DDIVE++ R + + A ++ 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  AFDPLNPDPGRGAAPYRVFNIGNNNPVELMAFIEAIEDAVGQKAEKNFLPLQDGDVPATY  300
                 +PDPG + APY+V+NIGNN+PV LM F+EAIE+ +G+ A KN++ LQ GDVP TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTDELNAWTGFAPATSVRDGVGRFVAWYRGYF  333
            A+ D+L    +F P T+++DGV +FV WY  Y+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

218) NAMH_1671 in NC_012115


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  346 bits (1299),  Expect = 9e-97, Method: Compositional matrix adjust.
 Identities = 207/349 (60%), Positives = 274/349 (79%), Gaps = 19/349 (5%)

Query  1    MKILITGTAGFIGFHLAKRLIERGDEVIGLDNINDYYDVNLKYGRLEETGIKREEIEYNK  60
            MKILITGTAGFIG HLAK+LI +G+ VIG+D+INDYY V+LK +RL   G          
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE--------  52

Query  61   LITSNKYTNYRFIKLNLEDKAGIDKLFKEEKFDKVCHLAAQAGVRYSLENPDAYIQSNIV  120
                    N+ F K++LE+  ++ K+F +E+ + V +LAAQAGVRYS+ENP +YI+SNIV
Sbjct  53   --------NFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIV  104

Query  121  GHMNILEAVRHNDVKALSYASSSSVYGLNKKQPFSTDDNVDHPISLYAATKKADELMSHT  180
            G MNILE  RH +++ L YASSSSVYG N  +PFST DN+DHP+SLYAATKK++ELM+HT
Sbjct  105  GFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHT  164

Query  181  YSYLYNIPTTGLRFFTVYGPWGRPDMALFKFVKNILEDKPIDVYNYGEMQRDFTYIDDII  240
            YS LYN+PTTGLRFFTVYGPWGRPDMALFKF K I++D++IDVYN G+M RDFTY+DDI+
Sbjct  165  YSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIV  224

Query  241  EGVVRVIDNPPKSNPEWDGRASE---SIAPYKVYNIGNGSPVKLMDFIEAIEESLGKEAK  297
            E++ R++ +P+ +N EW G  ++   S APYKVYNIGN SPV+LM+F+EAIE+ LGKEA+
Sbjct  225  EAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEAR  284

Query  298  KNLLPMQPGDVPSTWADTTDLEKDLGYKPYTDVKEGIKNFVEWYKGFYK  346
            KN + +QPGDVP T A+  DL +D+++KP T +++G+++FV+WY  +YK
Sbjct  285  KNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

219) SCD_n02914 in NC_022357


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  346 bits (1299),  Expect = 9e-97, Method: Compositional matrix adjust.
 Identities = 190/333 (58%), Positives = 261/333 (79%), Gaps = 1/333 (0%)

Query  1    MKVLITGVAGFIGMHVAQRLLAQGVEVVGIDNLNDYYDVQLKEDRLKQLLPLQGFRFVRL  60
            MK+LITG AGFIG H+A++L+ QG  V+G+D++NDYY V LKEDRLK +   + F F ++
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  61   DMADRTAMEALFAGEKFQRVVNLAAQPGVRYSIQNPHAYVNTNIVGFLNVLEGCRHNGVE  120
             + +   +  +F +E+ + VVNLAAQ+GVRYSI+NP++Y+++NIVGF+N+LE  RH  ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGSNTHMPFSVHDNVDHPVSLYAATKKSNELMAHTYSHLYRLPTTGLRFF  180
            +L+YASSSSVYG+NT  PFS  DN+DHP+SLYAATKKSNELMAHTYSHLY LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMSPSLFASAILEDRPIDVFNQGKMQRDFTYIDDIAEGVVRVLDKVAQPNS  240
            TVYGPWGRPDM+   F+ AI++D++IDV+N+G+M RDFTY+DDI E++ R++ K A PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  SFDRAAPDTASSDAPYRIYNIGNHEPVELMTFIETIESAIGKKAAKNMLPMQDGDVVATY  300
                A PD +SS APY++YNIGN+ PV LM F+E+IE+ +GK A KN + +Q GDV  TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADIEELTQTVGFAPHTPLSEGVAKFAAWFKIYY  333
            A++++L + ++F P+T + +GV KF  W+  YY
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

220) VEJY3_01085 in NC_016613


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  345 bits (1296),  Expect = 1e-96, Method: Compositional matrix adjust.
 Identities = 187/333 (57%), Positives = 263/333 (79%), Gaps = 0/333 (0%)

Query  1    MKYLVTGAAGFIGSAVVERLTNMGHDVVGIDNINDYYDINLKYARLERIAHPLFKFIKLD  60
            MK L+TG+AGFIGS +  +L + GH V+G+D+INDYY ++LK  RL  I+   F F K+ 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  61   IADRVVIPELFASEQFDRVIHLAAQAGVRYSLDNPLAYADSNLVGHLNILEGCRHNKVKH  120
            + +   ++ +F  EQ + V++LAAQAGVRYS++NP +Y DSN+VG +NILE  RH ++++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  121  LVYASSSSVYGLNGKVPFSTDDSVDHPISLYAATKKSNELMAHTYSHLYDIPTTGLRFFT  180
            L+YASSSSVYG N   PFST D++DHP+SLYAATKKSNELMAHTYSHLY++PTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  181  VYGPWGRPDMALLKFTHKIVKGETIDIYNNGDMRRDFTYIDDIVEGIIRIQNVIPEVNQD  240
            VYGPWGRPDMAL+KFT  IV++++ID+YN+G+M RDFTY+DDIVE+I R+ +  +  N++
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  241  WTVEDGSPATSSAPYRVYNIGNGQPVRLMDYIQALEESLGIEAKKNFMPMQPGDVYQTYA  300
            W+  D  P++S APY+VYNIGN  PVRLM++++A+E+ LG EA+KN+M +QPGDV +TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  301  DTTALYEATGYKPKVDVREGVSEFVEWFRSFYQ  333
            +   L+   ++KP   +++GV+ FV+W+  +Y+
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

221) ECL_03348 in NC_014121


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  345 bits (1295),  Expect = 2e-96, Method: Compositional matrix adjust.
 Identities = 199/333 (60%), Positives = 272/333 (82%), Gaps = 0/333 (0%)

Query  1    MKFLVTGAAGFIGSHVSKRLLDAGHQVVGIDNLNDYYDVNLKLARLDLLKSGNFTFHKME  60
            MK+L+TG+AGFIGSH++K+L+  GH V+G+D++NDYY V+LK  RL  +   NFTF+K+ 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  61   LADREAMAALFASEKFDRVIHLAAQAGVRYSLENPHAYADANLVGHLNVLEGCRHNNVQH  120
            L + + ++ +F  E+ + V++LAAQAGVRYS+ENP++Y D+N+VG +N+LE  RH N+Q+
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  121  LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMSHTYSHLYNLPTTGLRFFT  180
            L+YASSSSVYG N   PFST D++DHP+SLYAATKK+NELM+HTYSHLYNLPTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  181  VYGPWGRPDMALFKFTKAMIEGKSIDVYNYGKMKRDFTYIDDIAEAILRLQDVIPQADEN  240
            VYGPWGRPDMALFKFTKA++++++IDVYN G+M RDFTY+DDI EAI RL    + ++ +
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  241  WTVETGSPATSSAPYRVYNIGNSSPVELMDYITaleealgkeaekNMMPIQPGDVLETSA  300
            W+     P++S APY+VYNIGN+SPV LM+++ A+E+ LGKEA KN M +QPGDV ET A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  301  DTKALYDVIGFKPQTSVKDGVKNFVDWYRAFYN  333
            +   L+  I+FKP+T+++DGV++FVDWY  +Y+
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

222) Dsui_0401 in NC_016616


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  345 bits (1294),  Expect = 2e-96, Method: Compositional matrix adjust.
 Identities = 189/334 (57%), Positives = 262/334 (79%), Gaps = 1/334 (0%)

Query  1    MKILVTGAAGFIGMHTAQRLLERGDEVVGVDNLNDYYEVSLKEARLARLAAYPNFRFVRL  60
            MKIL+TG+AGFIG H A++L+ +G+ V+GVD++NDYY VSLKE RL  ++   NF F ++
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DIADSQGMQELFAAEGFQRVVHLAAQAGVRYSLANPHAYAQSNLVGFVNVLEGCRHAQAE  120
             + + +++  +F  E  + VV+LAAQAGVRYS+ NP++Y +SN+VGF+N+LE  RH + +
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGGNRKMPFSEHDAVDHPVSLYAATKKSNELMAHTYSHLFGLPTTGLRFF  180
            +L+YASSSSVYG+N   PFS  D +DHP+SLYAATKKSNELMAHTYSHL+ LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFLFTRAILEGRPIDVFNHGKMQRDFTYIDDIVEGVVRVLDQPARASE  240
            TVYGPWGRPDMALF FT+AI+++++IDV+NHG+M RDFTY+DDIVE++ R++ +PA ++ 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  SFDGLAPDPACSNVPYRLFNIGNDQPVDLLAFIEALEGALGQVANKRFLPLQDGDVPATW  300
               G  PDP+ S  PY+++NIGN+ PV L+ F+EA+E  LG+ A K ++ LQ GDVP T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTALLGQAVGFAPKTSVQDGVGQFVRWYRDYYR  334
            A+   L + ++F P T++QDGV +FV WY +YY+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

223) Dd586_1252 in NC_013592


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  345 bits (1295),  Expect = 2e-96, Method: Compositional matrix adjust.
 Identities = 185/334 (56%), Positives = 259/334 (78%), Gaps = 1/334 (0%)

Query  1    MKFLVTGAAGFIGFFTCQSLCAAGHTVVGIDNLNSYYEVSLKEARLAKLRTLAGFRFERI  60
            MK+L+TG+AGFIG    + L   GH V+G+D++N YY VSLKE RL  +     F F+++
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DIADSQAMAALFAAEKFERVIHLAAQAGVRYSLENPMVYAESNLIGHLNVLEGCRHSGVG  120
             + + + ++ +F  E+ E V++LAAQAGVRYS+ENP  Y +SN++G +N+LE  RH  + 
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLIYASSSSVYGLNSKTPFETTDSTDHPISLYAATKKSNELMAHSYSHLYDLPTTGLRFF  180
            +LIYASSSSVYG N+  PF T+D+ DHP+SLYAATKKSNELMAH+YSHLY+LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTRRILAGEPIDIYNQGDMWRDFTYVTDIVEGVLRVVDQIPTRQA  240
            TVYGPWGRPDMALFKFT+ I+ +++ID+YN+G+M RDFTYV DIVE++ R+V + ++ + 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWKVESGSPATSSAPYRLYNIGNGSPVRLMDFVTALESALGREAVKNFMPMQAGDVYQTY  300
            +W      P++S APY++YNIGN SPVRLM+FV A+E+ LG+EA KN+M +Q+GDV +TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTSDLFAVTGYRPQVGVNEGVRAFVDWYRDFYQ  334
            A+  DLF   +++P+  +++GV  FVDWY ++Y+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

224) wbnF in NC_017445


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  345 bits (1295),  Expect = 2e-96, Method: Compositional matrix adjust.
 Identities = 186/335 (56%), Positives = 266/335 (80%), Gaps = 1/335 (0%)

Query  1    MKYLVTGAAGFIGFHVTQRLLNAGHQVVGLDNLNDYYDVNLKTARLAHIAQYASFTFIKG  60
            MK L+TG+AGFIG H++++L++ GH V+G+D++NDYY V+LK  RL  I++  +FTF K 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DLADREGMAELFRCHRFQRVIHLGAQAGVRYSLENPLAYADANLVGHLNVLEGCRHNQVE  120
             L + ++++ +F  ++ + V++L+AQAGVRYS+ENP +Y D+N+VG +N+LE  RH +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLLYASSSSVYGLNRQMPFSTDDSVDHPVSLYAATKKANELMSHTYSHLYGIPTTGLRFF  180
            +L+YASSSSVYG N   PFST D++DHP+SLYAATKK+NELM+HTYSHLY +PTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTRAMIAGEIIDVYNHGQMRRDFTYIDDIVESIFRLQDVTPQADK  240
            TVYGPWGRPDMALFKFT+A++ ++ IDVYNHG+M RDFTY+DDIVE+I RL    + ++K
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWTVEAGSPATSSAPYRVYNIGNSQPVTLMAYIEALESALGTVADKNMLPMQAGDVVETS  300
            +W+     P++S APY+VYNIGN+ PV LM ++EA+E+ LG  A KN + +Q+GDV ET 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTRALYEVIGFKPQTSVEEGVARFVSWYKGFYHQ  335
            A+   L+  I+FKP+T++++GV +FV WY  +Y +
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

225) topB in NC_017390


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  345 bits (1296),  Expect = 2e-96, Method: Compositional matrix adjust.
 Identities = 186/335 (56%), Positives = 267/335 (80%), Gaps = 1/335 (0%)

Query  1    MKYLVTGAAGFIGFHVTQRLLNAGHQVVGLDNLNDYYDVNLKTARLAHIAQHASFTFIKG  60
            MK L+TG+AGFIG H++++L++ GH V+G+D++NDYY V+LK  RL  I+++ +FTF K 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKV  59

Query  61   DLADREGMAELFRCHRFQRVIHLGAQAGVRYSLENPLAYADANLVGHLNVLEGCRHNQVE  120
             L + ++++ +F  ++ + V++L+AQAGVRYS+ENP +Y D+N+VG +N+LE  RH +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLLYASSSSVYGLNRQMPFSTDDSVDHPVSLYAATKKANELMSHTYSHLYGIPTTGLRFF  180
            +L+YASSSSVYG N   PFST D++DHP+SLYAATKK+NELM+HTYSHLY +PTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTRAMIAGEKIDVYNHGQMRRDFTYIDDIVESIFRLQDVTPQADK  240
            TVYGPWGRPDMALFKFT+A++ ++ IDVYNHG+M RDFTY+DDIVE+I RL    + ++K
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWTVEAGSPATSSAPYRVYNIGNSQPVTLMTYIEALESALGTVADKNMLPMQAGDVVETS  300
            +W+     P++S APY+VYNIGN+ PV LM ++EA+E+ LG  A KN + +Q+GDV ET 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTRALYEVIGFKPQTSVEEGVARFVSWYKGFYHQ  335
            A+   L+  I+FKP+T++++GV +FV WY  +Y +
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

226) wbnF in NC_012214


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  345 bits (1296),  Expect = 2e-96, Method: Compositional matrix adjust.
 Identities = 186/335 (56%), Positives = 267/335 (80%), Gaps = 1/335 (0%)

Query  1    MKYLVTGAAGFIGFHVTQRLLNAGHQVVGLDNLNDYYDVNLKTARLAHIAQHASFTFIKG  60
            MK L+TG+AGFIG H++++L++ GH V+G+D++NDYY V+LK  RL  I+++ +FTF K 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKV  59

Query  61   DLADREGMAELFRCHRFQRVIHLGAQAGVRYSLENPLAYADANLVGHLNVLEGCRHNQVE  120
             L + ++++ +F  ++ + V++L+AQAGVRYS+ENP +Y D+N+VG +N+LE  RH +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLLYASSSSVYGLNRQMPFSTDDSVDHPVSLYAATKKANELMSHTYSHLYGIPTTGLRFF  180
            +L+YASSSSVYG N   PFST D++DHP+SLYAATKK+NELM+HTYSHLY +PTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTRAMIAGEKIDVYNHGQMRRDFTYIDDIVESIFRLQDVTPQADK  240
            TVYGPWGRPDMALFKFT+A++ ++ IDVYNHG+M RDFTY+DDIVE+I RL    + ++K
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWTVEAGSPATSSAPYRVYNIGNSQPVTLMTYIEALESALGTVADKNMLPMQAGDVVETS  300
            +W+     P++S APY+VYNIGN+ PV LM ++EA+E+ LG  A KN + +Q+GDV ET 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTRALYEVIGFKPQTSVEEGVARFVSWYKGFYHQ  335
            A+   L+  I+FKP+T++++GV +FV WY  +Y +
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

227) Sbal195_4469 in NC_009997


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  344 bits (1293),  Expect = 2e-96, Method: Compositional matrix adjust.
 Identities = 191/335 (58%), Positives = 262/335 (79%), Gaps = 1/335 (0%)

Query  1    MKYLVTGAAGFIGAKVSERLCLLGHEVIGIDNLNDYYDVNLKLARLDLLQTLDNFHFIKL  60
            MK L+TG+AGFIG+ ++ +L   GH VIG+D++NDYY V+LK  RL  +   +NF F K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DLADREGIAALFALHAFQRVIHLAAQAGVRYSLDNPLAYADSNLIGHLTILEGCRHHKIE  120
             L + ++++ +F  +  + V++LAAQAGVRYS++NP +Y DSN++G + ILE  RH +I+
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGLNQKMPFSTEDSIDHPISLYAATKKANELMSHTYSHLYQLPTTGLRFF  180
            +L+YASSSSVYG N   PFST D+IDHP+SLYAATKK+NELM+HTYSHLY+LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTKAILAGEVIDVYNHGDLSRDFTYIDDIVEGIILVQAKPPRPNT  240
            TVYGPWGRPDMALFKFTKAI+ ++ IDVYNHG++ RDFTY+DDIVE+I  +  KP+ PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWTVEAGTPATSSAPYRVFNIGNGSPVQLLDFITALEDALGIKANKNLLPMQPGDVHSTW  300
            +W+     P++S APY+V+NIGN SPV+L++F+ A+E+ LG  A KN + +QPGDV  T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTNDLFDAVGYKPLVDINTGVMQFVDWYRQFYNK  335
            A+ +DLF  +++KP   I+ GV +FVDWY ++Y+K
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

228) Sbal678_4498 in NC_016901


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  344 bits (1293),  Expect = 2e-96, Method: Compositional matrix adjust.
 Identities = 191/335 (58%), Positives = 262/335 (79%), Gaps = 1/335 (0%)

Query  1    MKYLVTGAAGFIGAKVSERLCLLGHEVIGIDNLNDYYDVNLKLARLDLLQTLDNFHFIKL  60
            MK L+TG+AGFIG+ ++ +L   GH VIG+D++NDYY V+LK  RL  +   +NF F K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DLADREGIAALFALHAFQRVIHLAAQAGVRYSLDNPLAYADSNLIGHLTILEGCRHHKIE  120
             L + ++++ +F  +  + V++LAAQAGVRYS++NP +Y DSN++G + ILE  RH +I+
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGLNQKMPFSTEDSIDHPISLYAATKKANELMSHTYSHLYQLPTTGLRFF  180
            +L+YASSSSVYG N   PFST D+IDHP+SLYAATKK+NELM+HTYSHLY+LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTKAILAGEVIDVYNHGDLSRDFTYIDDIVEGIILVQAKPPRPNT  240
            TVYGPWGRPDMALFKFTKAI+ ++ IDVYNHG++ RDFTY+DDIVE+I  +  KP+ PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWTVEAGTPATSSAPYRVFNIGNGSPVQLLDFITALEDALGIKANKNLLPMQPGDVHSTW  300
            +W+     P++S APY+V+NIGN SPV+L++F+ A+E+ LG  A KN + +QPGDV  T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTNDLFDAVGYKPLVDINTGVMQFVDWYRQFYNK  335
            A+ +DLF  +++KP   I+ GV +FVDWY ++Y+K
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

229) Sput200_2689 in NC_017566


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  344 bits (1293),  Expect = 2e-96, Method: Compositional matrix adjust.
 Identities = 193/333 (58%), Positives = 263/333 (79%), Gaps = 0/333 (0%)

Query  1    MKYLVTGAAGFIGSAVVEKLTLAGHQVIGVDNINNYYDVKLKHGRLNRIEHEKFTLVELD  60
            MK L+TG+AGFIGS +  KL   GH VIGVD+IN+YY V LK++RL+ I  E+FT+  + 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  61   IADRQALLQLFIDEQFDRVIHLAAQAGVRYSIENPHAYADSNLVGHLNILEGCRHTKVNH  120
            + + + L ++F+DEQ + V++LAAQAGVRYSIENP++Y DSN+VG +NILE  RH ++++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  121  LIYASSSSVYGLNAKTPFATSDSVDHPVSLYAATKKANELMAHSYSHLYNIPTTGLRFFT  180
            LIYASSSSVYG N+  PF+TSD++DHP+SLYAATKK+NELMAH+YSHLYN+PTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  181  VYGAWGRPDMAPFIFTKKILEGETIDINNNGDMWRDFTHVDDIVEGVVRIADVIPTRNET  240
            VYG+WGRPDMA F FTK I+++++ID+ N+G+M RDFT VDDIVE++ R+    ++ N  
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  241  WTVETGTPASSSAPYAVYNIGHGSPINLMDFVKAIEDELGIEAKKHFREMQPGDVYQTYA  300
            W+     P+SS APY VYNIG+ SP+ LM+FV AIE+ LG EA+K++ ++QPGDV +TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  301  DTQDLFVATGYQPKVGVKEGVAEFVAWYRSYYK  333
            + +DLF   +++P   +++GV  FV WY  YYK
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

230) wbnF in NC_014306


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  344 bits (1292),  Expect = 3e-96, Method: Compositional matrix adjust.
 Identities = 190/334 (57%), Positives = 263/334 (79%), Gaps = 1/334 (0%)

Query  1    MKYLVTGAAGFIGFHVAERLLSAGHQVVGIDNLNDYYDVNLKLARLKLLEPHAQFTFIKL  60
            MK L+TG+AGFIG H+A +L+  GH V+G+D++NDYY V+LK  RLK +    +FTF K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG-KENFTFNKV  59

Query  61   DLADREGIAQLFRDQAFERVIHLGAQAGVRYSLDNPLAYADANLIGHLNILEGCRHNHIG  120
             L + ++++++F D+  E V++L+AQAGVRYS++NP +Y D+N++G +NILE  RH +I 
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLLYASSSSVYGLNNKMPFSTDDSVDHPVSLYAATKKANELMSHTYSHLYGIPTTGVRFF  180
            +L+YASSSSVYG N   PFST D++DHP+SLYAATKK+NELM+HTYSHLY +PTTG+RFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTRAMLAGEQIDVYNNGQMRRDFTYIDDIAEAIVRLQDVIPQANP  240
            TVYGPWGRPDMALFKFT+A++ ++ IDVYN+G+M RDFTY+DDI EAI RL    + +N 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWTVEQGSPASSSAPYCVYNIGNSNPVTLMAYIEALEKALGISAKKNMLPMQPGDVLETS  300
            +W+  +  P+SS APY VYNIGN++PV LM ++EA+E+ LG  A+KN + +QPGDV ET 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTRALFNAIGFKPQTGVEEGIANFVSWYRSFYK  334
            A+   LF  I+FKP+T +++G+ +FV WY  +YK
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

231) BBta_5621 in NC_009485


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  344 bits (1291),  Expect = 4e-96, Method: Compositional matrix adjust.
 Identities = 186/332 (57%), Positives = 260/332 (79%), Gaps = 1/332 (0%)

Query  6    ILVTGAAGFIGFHLAQRLLAEGRQVIGIDNINAYYDPKLKQARLDRLAAQPGFIFHKLDL  65
            IL+TG+AGFIG HLA++L+ +G+ VIG+D+IN YY   LK+ RL  ++ +  F F+K+ L
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKVKL  61

Query  66   VDRAGVKALFAAHHFPAVVHLAAQAGVRYSLDNPHAYVDANLEGFINILEGCRHHGCAHL  125
             +  ++  +F  ++   VV+LAAQAGVRYS++NP++Y+D+N+ GF+NILE  RH    +L
Sbjct  62   ENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNL  121

Query  126  LFASSSSVYGANTKLPFSVKDNVDHPISLYAASKKANELMAHSYSHLYRLPATGLRFFTV  185
            ++ASSSSVYGANT  PFS  DN+DHP+SLYAA+KK+NELMAH+YSHLY LP+TGLRFFTV
Sbjct  122  IYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTV  181

Query  186  YGPWGRPDMAMFIFAKAILAGQPVRLFNHGQMRRDFTYIDDIVQAIHRLIGRPPQGNPDW  245
            YGPWGRPDMA+F F+KAI+ +Q++ ++NHG+M RDFTY+DDIV+AI RL+ +P+  N +W
Sbjct  182  YGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEW  241

Query  246  DGTRPDPSSSRAPWRIYNIGNNHPEQLMDVITLLEKEFGRPAIKEMLPMQPGDVEATYAD  305
             G+ PDP+SS AP ++YNIGNN P +LM+ +  +E+ +G+ A K+ + +QPGDV  TYA+
Sbjct  242  SGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYAN  301

Query  306  VSDLERDIGFRPATPIADGIARFARWYREYHQ  337
            V DL RDI+F+P T I DG+ +F  WY EY +
Sbjct  302  VDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

232) VAA_02521 in NC_015633


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  343 bits (1286),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 188/334 (57%), Positives = 263/334 (79%), Gaps = 0/334 (0%)

Query  1    MKYLVTGAAGFIGSATAEKLLAAGHEVVGIDNINDYYDMSLKQARLDRIQHANFRFIVLD  60
            MK L+TG+AGFIGS  A KL+  GH V+G+D+INDYY +SLK+ RL  I   NF F  + 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  61   IADRQSVEALFAEHQFDRVIHLAAQAGVRYSIENPHAYADSNLVGHLNILEGCRQNQVKH  120
            + + + +  +F ++Q + V++LAAQAGVRYSIENP++Y DSN+VG +NILE  R+ ++++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  121  LIYASSSSVYGLNAKVPFETSDSVDHPVSLYAATKKSNELMAHSYSHLYDIPTTGLRFFT  180
            LIYASSSSVYG N+  PF TSD++DHP+SLYAATKKSNELMAH+YSHLY++PTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  181  VYGPWGRPDMAPFIFTKKILDGETIDINNNGDMWRDFTYIDDIIEGVVRIADVIPTRNPQ  240
            VYGPWGRPDMA F FTK I+++++ID+ N+G+M RDFTY+DDI+E++ R+    ++ N +
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  241  WTVEAGTPASSSAPYAVYNIGHGSPISLMDFIKAIEDELGIEAKKNFREMQAGDVYQTYA  300
            W+     P+SS APY VYNIG+ SP+ LM+F+ AIE+ LG EA+KN+ ++Q+GDV +TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  301  ETTDLFAATGYTSKVSVKEGVAKFVQWYREFYNK  334
            +  DLF   ++ +  ++++GV KFV+WY E+Y+K
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

233) Dd703_1201 in NC_012880


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  343 bits (1286),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 186/334 (56%), Positives = 255/334 (77%), Gaps = 1/334 (0%)

Query  1    MKFLVTGAAGFIGFHLCQSLSDAGHDVVGIDSLNSYYDVSLKDARLAILRELPGFRFERM  60
            MK+L+TG+AGFIG HL + L   GH V+G+DS+N YY VSLK+ RL  +     F F+++
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DIADSPAVAALFAAERFDRVVHLAAQAGVRYSLENPMVYAESNVIGHLNILEGCRHSGVG  120
             + +   ++ +F  E+ + VV+LAAQAGVRYS+ENP  Y +SN++G +NILE  RH  + 
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGLNSKTPFSTGDSVDHPISLYAATKKSNELMAHAYSHLYGIPTTGLRFF  180
            +L+YASSSSVYG N+  PFST+D++DHP+SLYAATKKSNELMAH+YSHLY +PTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTRAILAGESIDIYNHGDMWRDFTYVTDIVDGVISVADLIPQRDP  240
            TVYGPWGRPDMALFKFT+AI+ +++ID+YNHG+M RDFTYV DIV+++  +    +  + 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  SWTVEQGTPATSSAPYRIYNIGNGQPVKLMDFVTALERELGIEAIKNFMPMQAGDVYQTY  300
             W+  +  P++S APY++YNIGN  PV+LM+FV A+E  LG EA KN+M +Q+GDV +TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTDDLFAVTGYRPRVGVEQGVRAFVEWYREYYH  334
            A+ DDLF   +++P   +++GV  FV+WY EYY 
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

234) A359_01790 in NC_018419


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  343 bits (1289),  Expect = 5e-96, Method: Compositional matrix adjust.
 Identities = 187/333 (57%), Positives = 262/333 (79%), Gaps = 1/333 (0%)

Query  1    MKFLVTGAAGFIGYHVSKRLLADGHQVSGLDNLSAYYDVSLKQARLARLQAYEAFIFHKI  60
            MK+L+TG+AGFIG H++K+L+ +GH V G+D+++ YY VSLK+ RL  +   E F F+K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DLVDRRAIASLFTDEGFERVIHLAGQVGVRYSLDNPLAYGDANLIGHLNILEGCRHTQVG  120
             L +   ++ +F DE  E V++LA+Q GVRYS++NP +Y D+N++G +NILE  RH ++ 
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLLYASSSSVYGLNRKLPFSTSDAVDHPISLYAATKKANELMAHTYAHLYQLPTTGMRFF  180
            +L+YASSSSVYG N   PFSTSD +DHP+SLYAATKK+NELMAHTY+HLY+LPTTG+RFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTHAMLRGERIDVYNNGVMLRDFTYIDDIVEAVIRLQDLIPVQDA  240
            TVYGPWGRPDMALFKFT A++ ++ IDVYN+G M+RDFTY+DDIVEA+ RL    +  + 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  SWTAETGSPASSSSPYRVYNIGNSQPVKLIDYIQALEDALGIQAEKNLLPLQPGDILETS  300
             W++    P+SS +PY+VYNIGN+ PV+L+++++A+E+ LG +A KN + LQPGD+ ET 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADALALYRAIGFKPQTPLSEGVKQFVAWYREYY  333
            A+   L+R I+FKP+T + +GV++FV WY EYY
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

235) DvMF_2048 in NC_011769


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  343 bits (1287),  Expect = 8e-96, Method: Compositional matrix adjust.
 Identities = 192/335 (58%), Positives = 268/335 (80%), Gaps = 1/335 (0%)

Query  1    MHILVTGAAGFIGYHLSRRFLEAGHTVVGLDCLNDYYDVQLKKDRLKQLEPYPGFAFAQl  60
            M IL+TG+AGFIG HL+++++  GH V+G+D +NDYY V LK DRLK +     F+F ++
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   dmaddagmdalfagQKFTHVVNLAAQAGVRYSLKNPRSYVQSNLVGFGNILEGCRHNGVQ  120
             + +  ++  +F +++   VVNLAAQAGVRYS+ NPR+Y++SN+VGF NILE  RH  +Q
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGLNTAMPFSVHHNVDHPISLYAASKKANELMAHTYSHLYRLPTTGLRFF  180
            +L+YASSSSVYG NT+ PFS  +N+DHP+SLYAA+KK+NELMAHTYSHLY LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALYLFTRAILEGKPINVFNEGRMRRDFTYIGDIVEGVVRVTERTPQPNP  240
            TVYGPWGRPDMAL+ FT+AI+++++I+V+N+G M RDFTY++DIVE++ R+  + + PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  EWRGDAPDPSTSPAPYRIYNIGNNNAVELGRFIEILEDCLGRKAVRNLMPMQPGDVEATY  300
            EW G  PDP++S APY++YNIGNN++V L  F+E +E+ LG+ A +N M +QPGDV  TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADVDDLIRDTGFKPHTPLEQGIEAFVRWFRDYYKM  335
            A+VDDL+RD +FKP+T +++G++ FV W+ +YYK 
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

236) Npun_F1376 in NC_010628


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  343 bits (1286),  Expect = 9e-96, Method: Compositional matrix adjust.
 Identities = 193/334 (58%), Positives = 267/334 (80%), Gaps = 1/334 (0%)

Query  2    IKVLVTGAAGFIGFHLSQRLLARGNEVFGLDNLNDYYDVNLKKARLAKLQDNSSFKFYQV  61
            +K+L+TG+AGFIG HL+++L+ +G+ V+G+D++NDYY V+LK  RL  + ++ +F F +V
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  62   DLADRESMAMLFAEEGFDVVANLAAQPGVRYSLKNPHAYIDSNVVGFINVLEGCRHSRVK  121
             L + + ++ +F +E  +VV NLAAQ+GVRYS+ NP++YIDSN+VGF+N+LE  RH  ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  122  HLVFASSSSVYGANTKVPFSVHDKVDHPVSLYAATKKANELMAHTYSHLYGLPTTGLRFF  181
            +L++ASSSSVYGANT  PFS  D++DHP+SLYAATKK+NELMAHTYSHLY LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  182  TVYGPWGRPDMAPFLFTKAILAGESINVFNYGQMRRDFTYIDDIVEGVIHVIDKIPKPNS  241
            TVYGPWGRPDMA F FTKAI+ +++I+V+N G+M RDFTY+DDIVE++ +++ K + PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  242  SLSEKASDSEISNAAYKLYNIGNNQSVELMRFIEVIENCLGMKAEKNLLPMQPGDVPVTY  301
              S   +D+  S A+YK+YNIGNN +V LM F+E IEN LG  A KN + +QPGDVP TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  302  ADVDDLATDVGFRPNTPIEVGVERFVSWYRSYYQ  335
            A+VDDL  D++F+P+T I+ GV++FV WY  YY+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

237) S58_25330 in NC_020453


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  343 bits (1286),  Expect = 9e-96, Method: Compositional matrix adjust.
 Identities = 185/332 (56%), Positives = 263/332 (80%), Gaps = 1/332 (0%)

Query  6    ILVTGAAGFIGFHLTQRLLAEGRQVIGIDNINAYYDPKLKEARLEILKAQPGFVFHKLDL  65
            IL+TG+AGFIG HL+++L+ +G+ VIG+D+IN YY   LKE RL  + ++  F F+K+ L
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKVKL  61

Query  66   VDRAGIKALFAQHRFPAVVHLAAQAGVRYSLENPHAYVDANLEGFINVLEGCRHHGCEHL  125
             +  ++  +F +++   VV+LAAQAGVRYS+ENP++Y+D+N+ GF+N+LE  RH   ++L
Sbjct  62   ENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNL  121

Query  126  LFASSSSVYGANTKLPFSVRDNVDHPISLYAASKKANELMAHSYSHLYQLPATGLRFFTV  185
            ++ASSSSVYGANT  PFS  DN+DHP+SLYAA+KK+NELMAH+YSHLY+LP+TGLRFFTV
Sbjct  122  IYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTV  181

Query  186  YGPWGRPDMAMFIFAKAILAGQPVRLFNHGQMRRDFTYVDDIVQAIFRLIGRPPQGNPDW  245
            YGPWGRPDMA+F F+KAI+ +Q++ ++NHG+M RDFTYVDDIV+AI RL+ +P+  N +W
Sbjct  182  YGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEW  241

Query  246  DGNKPDPSSSRAPWRIYNIGNNHPEQLLDVITLLEKEFGRPAIKEMLPMQPGDVEATYAD  305
             G  PDP+SS AP ++YNIGNN P +L++ +  +E+ +G+ A K+ + +QPGDV  TYA+
Sbjct  242  SGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYAN  301

Query  306  VSDLERDIGFRPATSIADGIGRFAKWYRDYHR  337
            V DL RDI+F+P T+I DG+ +F  WY +Y +
Sbjct  302  VDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

238) Riv7116_2469 in NC_019678


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  342 bits (1284),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 190/333 (58%), Positives = 270/333 (82%), Gaps = 8/333 (2%)

Query  1    MSVLITGVAGFIGYHLAQRLLADGEQVYGIDNLNDYYDVNLKKARLAQLIPHTNFHFQQL  60
            M +LITG AGFIG HLA++L+ +G+ V G+D++NDYY V+LK  RL   I   NF F+++
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKS-IGKENFTFNKV  59

Query  61   DLNNREEILKLFKEQNFDYVINLAAQAGVRYSLENPFAYVDTNLVGFANILEACRHSQPK  120
             L+N +++ K+F +++ + V+NLAAQAGVRYS+ENP +Y+D+N+VGF NILE  RH + +
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVFASSSSVYGTNTKIPFSVTDNVDNPVSLYAATKKANELMAHSYSHLYSLPITGLRFF  180
            +L++ASSSSVYG+NT  PFS +DN+D+P+SLYAATKK+NELMAH+YSHLY+LP TGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMAYFKFVRAIEANEPINIFNYGKMQRDFTYIDDVIEGVVRVMHKPQK---  237
            TVYGPWGRPDMA FKF +AI  +++I+++N G+M RDFTY+DD++E++ R++ KP     
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  238  ----AQVDKAHKNARYKIYNIGNNKPVELLEFIQVIEKALGKEAQKNFLPMQPGDVPRTY  293
                A+ D +   A YK+YNIGNN PV L+EF++ IE+ LGKEA+KN++ +QPGDVP TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  294  ADVDELIQDVGFKPTTTIEQGIEKFVQWYKDFY  326
            A+VD+L++D++FKP TTI++G++KFV+WY ++Y
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

239) Hhal_2179 in NC_008789


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  342 bits (1283),  Expect = 2e-95, Method: Compositional matrix adjust.
 Identities = 190/334 (57%), Positives = 260/334 (78%), Gaps = 2/334 (0%)

Query  1    MRILVTGVAGFIGMHCARQLIEAGHQVVGIDNLNDYYDVTLKEARLDELRRCEGDFYFAR  60
            M+IL+TG AGFIG H A++LI  GH V+G+D++NDYY V+LKE RL  + +   +F F +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK--ENFTFNK  58

Query  61   VDLADSAGVDALFREGRFDRVIHLAAQAGVRYSLENPRAYIDSNLVGFGNILEGCRHHDT  120
            V L +  ++  +F + + + V++LAAQAGVRYS+ENPR+YIDSN+VGF NILE  RH + 
Sbjct  59   VKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNI  118

Query  121  GHLVYASSSSVYGANTRMPFSVHDNVDHPVSLYAATKKSNELMAHTYAHLYGLPVTGLRF  180
             +L+YASSSSVYGANT  PFS  DN+DHP+SLYAATKKSNELMAHTY+HLY LP TGLRF
Sbjct  119  QNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRF  178

Query  181  FTVYGPWGRPDMAPFKFTRSILAGEPIEVYNYGRMRRDFTYIDDIVDGVLRVMDTLPEPD  240
            FTVYGPWGRPDMA FKFT++I+ +++I+VYN G M RDFTY+DDIV+++ R++   + P+
Sbjct  179  FTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPN  238

Query  241  PEFSTDAPDPARSNAPYRVYNIGNHRPVALEDFIAALEDACGRKAQRHELPMQPGDVAET  300
             E S   PDP+ S APY+VYNIGN+ PV L +F+ A+E+  G+ A+++ + +QPGDV+ET
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPET  298

Query  301  YADIDDLTAATGWHPQTAIEQGLPQFVAWYRAFY  334
            YA++DDL    +  P+T+I++G+ +FV WY  +Y
Sbjct  299  YANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

240) CT0230 in NC_002932


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  341 bits (1282),  Expect = 2e-95, Method: Compositional matrix adjust.
 Identities = 202/349 (58%), Positives = 272/349 (78%), Gaps = 16/349 (4%)

Query  1    MKILVTGAAGFIGFHLCERLASRGDDVVGIDNINDYYDQRVKYGRLAYSGIAESAIEYGK  60
            MKIL+TG+AGFIG HL  +L  +G+ V+G+D+INDYY   +K +RL             K
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRL-------------K  47

Query  61   TVQSSKYPNYRFVKLNLEDKEGIDNLFKAEKFDALCNLAAQAGVRYSLTNPASYVSSNIV  120
            ++   ++    F K++LE+ +++ ++F  E+ + + NLAAQAGVRYS+ NP +Y+ SNIV
Sbjct  48   SIGKENFT---FNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIV  104

Query  121  GFVNLLEAARHNSLGNFCYASSSSVYGLNERQPFSVHDNVDHPVSLYAASKKSNELMAHT  180
            GF+N+LE +RH ++ N+ YASSSSVYG N  +PFS  DN+DHP+SLYAA+KKSNELMAHT
Sbjct  105  GFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHT  164

Query  181  YSHLFGIPTTGLRFFTVYGPWGRPDMALFLFTKAALEGRPIDVFNYGNMQRDFTYIDDIV  240
            YSHL+ +PTTGLRFFTVYGPWGRPDMALF FTKA +++++IDV+N GNM RDFTY+DDIV
Sbjct  165  YSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIV  224

Query  241  EGVVRVLDHPAQPNPDWSGAAPDPGTSSAPYRVYNIGNNKTVKLMDYIEALENALGVTIE  300
            E++ R++  PA PN +WSGA PDPG+S APY+VYNIGNN  V+LM+++EA+EN LG    
Sbjct  225  EAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEAR  284

Query  301  KNLLPIQPGDVPSTWANVSDLVKDFDYKPETTVQEGVNRFIAWYREFFK  349
            KN + +QPGDVP T ANV DL +D+D+KPETT+Q+GVN+F+ WY E++K
Sbjct  285  KNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

241) AM1_0393 in NC_009925


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  341 bits (1281),  Expect = 2e-95, Method: Compositional matrix adjust.
 Identities = 189/334 (57%), Positives = 263/334 (79%), Gaps = 12/334 (3%)

Query  1    MRVLVTGAAGFIGYHLSQRLLLDRAQVFGIDNLNNYYAVDLKKSRLAQLEPNQNFQFQCL  60
            M++L+TG+AGFIG HL+++L+ +   V+G+D++N+YY+V LK  RL  +  ++NF F+ +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG-KENFTFNKV  59

Query  61   DLSDRNGMETLFESNTFDGVIHLAAQAGVRYSLDNPHAYVDSNLVGFLHILEGCRQSNIS  120
             L + +++  +F  +  + V++LAAQAGVRYS++NP++Y+DSN+VGF++ILE  R+ NI 
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGANKKVPFSVEDNVDHPVSLYAATKKSNELMAHSYSHLYQIPITGLRFF  180
            +L+YASSSSVYGAN   PFS  DN+DHP+SLYAATKKSNELMAH+YSHLY++P TGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMAYFKFVDAIANNKSIDVYNHGKMQRDFTYIDDVVEGIVRVLHQP-----  235
            TVYGPWGRPDMA FKF  AI N+++IDVYNHG+M RDFTY+DD+VE+I R++ +P     
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  236  ------PNPDTTTPPYKLYNIGNNQPVTLMRFIEVIETAMGKTADKNFLPMQPGDVPATY  289
                  P+P+++ +PYK+YNIGNN PV LM F+E IE  +GK A KN++ +QPGDVP TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  290  ADVDALMNDVGFQPKTPIEDGIQKFVTWYRSYYQ  323
            A+VD L  D++F+P T I+DG++KFV WY  YY+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

242) Glov_0479 in NC_010814


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  341 bits (1282),  Expect = 2e-95, Method: Compositional matrix adjust.
 Identities = 187/335 (56%), Positives = 271/335 (81%), Gaps = 1/335 (0%)

Query  1    MRILVTGAAGFIGFHLCRRLLARGDAVLGLDNLNSYYDVSLKQARLAQLQPHPGFSFVQA  60
            M+IL+TG+AGFIG HL ++L+ +G+ V+G+D++N YY VSLK+ RL  +     F+F + 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  61   DLADRPAMEQLFSVEQFDIVIHLAAQAGVRYSLENPHAYVDSNLTGFMNILEGCRHTGVK  120
             L +   + ++F  EQ ++V++LAAQAGVRYS+ENP++Y+DSN+ GFMNILE  RH  ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVFASSSSVYGANTAIPFSIHQNVDHPVSLYAATKKANELMAHSYASLFNLPVTGLRLF  180
            +L++ASSSSVYGANT+ PFS  +N+DHP+SLYAATKK+NELMAH+Y+ L+NLP TGLR+F
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMAYFSFTRAILEGRPINIFNRGRMQRDFTYVDDIVEGIVRIAEKPAEKNP  240
            TVYGPWGRPDMA F FT+AI+++++I+++N+G M RDFTYVDDIVE+I R+  KPA  N 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  TWSGTQPDPGTSFAPYRIYNIGNNKPVellqfieileqqlgiTAQKNFLPMQAGDVPATF  300
             WSG++PDPG+S+APY++YNIGNN PV L++F+E +E++LG  A+KN++ +Q+GDVP T+
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADIDELAAATGFRPATSLEDGIARFVAWFRSYYSH  335
            A++D+L    +F+P T+++DG+ +FV W+  YY  
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

243) Sinac_5448 in NC_019892


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  341 bits (1281),  Expect = 2e-95, Method: Compositional matrix adjust.
 Identities = 184/329 (56%), Positives = 256/329 (78%), Gaps = 1/329 (0%)

Query  9    LVTGAAGFIGYHVAHRLLKDGEEVLALDNLNPYYDVRLKQARLAQLKTFPGFQFEEVDLA  68
            L+TG+AGFIG H+A +L+K+G+ V+++D++N YY V LK+ RL  +     F F+ V L 
Sbjct  4    LITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKVKLE  62

Query  69   DRVGMEALFARHSVGRVIHLAGQAGVRYSLTNPHAYTESNITGFLHILEGCRQSHVRHLV  128
            +  ++  +F  +    V++LA+QAGVRYS+ NP++Y +SNI GF++ILE  R+ ++++L+
Sbjct  63   NYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNLI  122

Query  129  YASSSSVYGGNTRVPFSVHDNVDHPVSLYAATKKANEVMAHSYAHLFGLPCTGLRFFTVY  188
            YASSSSVYG+NT  PFS  DN+DHP+SLYAATKK+NE+MAH+Y+HL+ LP TGLRFFTVY
Sbjct  123  YASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTVY  182

Query  189  GPWGRPDMAMFIFTKAILAGEPITLFNEGRMRRDFTYVDDIVEGIVRLRNHVPGPDPTWS  248
            GPWGRPDMA+F FTKAI+ +++I ++N+G M RDFTYVDDIVE+I RL +  ++P+  WS
Sbjct  183  GPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEWS  242

Query  249  SEAPDPGSSSAPYRIYNIGNNQPVELLELVSILERTLGRKALKLLAPMQPGDVPSTYADV  308
            +  PDPGSS APY++YNIGNN PV L+E+V  +E  LG+ A K    +QPGDVP TYA+V
Sbjct  243  GADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYANV  302

Query  309  DDLMREVDFRPATPLEVGVERFVAWYREY  337
            DDL R++DF+P T ++ GV++FV WY EY
Sbjct  303  DDLFRDIDFKPETTIQDGVNKFVDWYLEY  331

244) Bind_0796 in NC_010581


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  341 bits (1282),  Expect = 2e-95, Method: Compositional matrix adjust.
 Identities = 181/332 (55%), Positives = 257/332 (78%), Gaps = 1/332 (0%)

Query  8    ILVTGVAGFIGSFLAARLLDENREVVGIDNMNAYYDPALKRARLAQLSSRAGFRFLEGDL  67
            IL+TG AGFIGS LA +L+ + + V+G+D++N YY  +LK  RL  ++ +  F F    L
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG-KENFTFNKVKL  61

Query  68   VDTDFMRAAFTETRPKIVVNLAAQAGVRYSLENPRSYVDSNIVGFLNILENCRAMGVEHL  127
             + D +   F + +P +VVNLAAQAGVRYS+ENPR+Y+DSNIVGF+NILE  R   +++L
Sbjct  62   ENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNL  121

Query  128  VYASSSSVYGANPTMPFSTRDNVDHPVSLYAASKKANELMAHSYAHLYGLPVTGLRFFTV  187
            +YASSSSVYGAN + PFST DN+DHP+SLYAA+KK+NELMAH+Y+HLY LP TGLRFFTV
Sbjct  122  IYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTV  181

Query  188  YGPWGRPDMAYFIFTRKILAGEPIDVFNHGDLSRDFTYIDDIVDGVRKVMDHVPKGDPNW  247
            YGPWGRPDMA F FT+ I+ +++IDV+NHG++ RDFTY+DDIV+++ +++   +  + +W
Sbjct  182  YGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEW  241

Query  248  ATNGASPATSTAPYQLYNIGNNRPERLLDMIETLETLLGRKAEKRFLPLQPGDVLATWAD  307
            +  ++ P++S APY++YNIGNN P RL++ +E++E  LG+ A K ++ LQPGDV  T A+
Sbjct  242  SGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYAN  301

Query  308  IDDLQKDTGFAPKTTLAQGLSHFVDWYRDFYK  339
            +DDL +D +F P TT+ +G++ FVDWY ++YK
Sbjct  302  VDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

245) ambt_03705 in NC_015554


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  341 bits (1280),  Expect = 3e-95, Method: Compositional matrix adjust.
 Identities = 201/337 (60%), Positives = 278/337 (83%), Gaps = 4/337 (1%)

Query  1    MKILVTGAAGFIGAAVSQYLINRGDDVVGIDNINDYYDIALKHARLEQVQNSAAGERFTF  60
            MKIL+TG+AGFIG+ +++ LI++G+ V+G+D+INDYY ++LK+ RL  +    + E FTF
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI----GKENFTF  56

Query  61   IKMGVEDRPEMAALFEDQKFDKVVHLAAQAGVRYSIENPNAYVDANLVGFMNILEGCRHN  120
             K+ +E+  +++ +F D++ + VV+LAAQAGVRYSIENP +Y+D+N+VGFMNILE  RH 
Sbjct  57   NKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHF  116

Query  121  KVGHLVYASSSSVYGANETMPFSEQHNVDHQVSLYAASKKANELMAHTYSHLYNLPTTGL  180
            ++ +L+YASSSSVYGAN + PFS  +N+DH +SLYAA+KK+NELMAHTYSHLYNLPTTGL
Sbjct  117  NIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGL  176

Query  181  RFFTVYGPWGRPDMALFKFTKAILEGKTIQVYNFGNHRRDFTYIDDIVEGVIRSLDNVAK  240
            RFFTVYGPWGRPDMALFKFTKAI+++++I+VYN GN  RDFTY+DDIVE++ R + + A 
Sbjct  177  RFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPAS  236

Query  241  PNEswdasapdpssskapYKVYNIGAQTPVHLLKFIETLEASLGVEAKKELLPLQPGDVP  300
            PN  W ++ PDP+SS APYKVYNIG ++PV+L+ F+E++E  LG EA+K+ + LQPGDVP
Sbjct  237  PNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVP  296

Query  301  DTYADVSSLVNDTGYKPSTSIDVGVKNFVDWYKDFYN  337
            +TYA+V  L  D ++KP T+I+ GV++FVDWY ++Y+
Sbjct  297  ETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

246) Cal6303_2108 in NC_019751


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  341 bits (1279),  Expect = 3e-95, Method: Compositional matrix adjust.
 Identities = 200/334 (60%), Positives = 268/334 (81%), Gaps = 8/334 (2%)

Query  1    MKILITGVAGFIGYHLAEELLLESEQIYGIDNLNSYYDVSLKKARLSQLNLNSNFKFQYL  60
            MKILITG AGFIG HLA  L+ +++ + G+D++N YY VSLK  RL  +  + NF F+ +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG-KENFTFNKV  59

Query  61   DLIDSLGISQLFQQEKFDCVVHLAAQAGVRYSLENPQAYIDSNLIGFTNILEACRHNQIK  120
             L +  ++S++F +E+ + VV+LAAQAGVRYS+ENP++YIDSN++GF NILE  RH +I+
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLIFASSSSVYGANIKVPFSVSDNVDHPISLYAATKKANELMAHSYSHLYNLPITGLRFF  180
            +LI+ASSSSVYGAN   PFS SDN+DHP+SLYAATKK+NELMAH+YSHLYNLP TGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGTWGRPDMAYFKFAKAIDQNKSIDVYNYGKMQRDFTYIDDVVEAIARLIHK--SPQK  238
            TVYG WGRPDMA FKF+KAI ++++IDVYN G+M RDFTY+DD+VEAI+RL+ K  SP+K
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  239  MSANINSN-----ACYKIYNIGNNKPVGLLRFIQLIESAMGKKAEKNFLPMQPGDVTATY  293
              +  +++     A YK+YNIGNN PV L+ F++ IE+ +GK A KN++ +QPGDV  TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  294  ADVDDLIRDIGFKPSTSIEEGIERFVQWYQGYYH  327
            A+VDDL+RDI+FKP T+I++G+++FV+WY  YY 
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

247) Thimo_3601 in NC_019940


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  341 bits (1281),  Expect = 3e-95, Method: Compositional matrix adjust.
 Identities = 194/333 (59%), Positives = 273/333 (82%), Gaps = 1/333 (0%)

Query  1    MKVMVTGSAGFIgaalaarllgrgDEVVGVDNLNDYYDVALKEARLRRLLDRPGYTHLHL  60
            MK+++TG+AGFIG+ LA +L+ +G+ V+GVD++NDYY V+LKE RL+ + ++  +T   +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  61   DVEDgagvaaafaaHRPQRVVNLAAQAGVRYSIENPMAYVGTNLVGFAHVLEGCRQSGVE  120
             +E+  +++  F  ++P+ VVNLAAQAGVRYSIENP +Y+++N+VGF ++LE  R+  ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGANTRMPFSVHDNVDHPLSLYAASKKANELMAHTYSHLYRIPVTGLRFF  180
            +L+YASSSSVYGANT  PFS  DN+DHPLSLYAA+KK+NELMAHTYSHLY +P TGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTRAILAGEPIQVFNYGRHRRDFTYIDDIVEGVLRTLDRPAEPNP  240
            TVYGPWGRPDMALFKFT+AI+ +++I+V+N G   RDFTY+DDIVE++ R + +PA PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  HWSGDAPDAATSLAPYRLYNIGNNRPVELMDYIETLEHCLGREAQKTLLPLQPGDVPDTY  300
            +WSG  PD+++S APY++YNIGNN PV LM+++E++E+ LG+EA+K  + LQPGDVP+TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADVEDLAADTGYRPETPVAVGVARFVDWYRDYY  333
            A+V+DL  D +++PET +  GV +FVDWY +YY
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

248) K734_02825 in NC_021286


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  341 bits (1280),  Expect = 3e-95, Method: Compositional matrix adjust.
 Identities = 198/348 (57%), Positives = 266/348 (77%), Gaps = 16/348 (4%)

Query  1    MKVLVTGTAGFIGFYTALKLLKQGHTVVGLDSINDYYDVNLKYGRLQESGIKQSNIEYGA  60
            MK+L+TGTAGFIG   A KL+KQGH V+G+DSINDYY V+LK +RL+  G          
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE--------  52

Query  61   TVQSGLYPDYSFVQLKLEDKPALDALFEQEQFDAVCNLAAQAGVRYSLENPNAYIDSNIV  120
                    +++F ++KLE+   L  +F +EQ + V NLAAQAGVRYS+ENP +YIDSNIV
Sbjct  53   --------NFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIV  104

Query  121  GFMNVLEACRHNGVKNLSYASSSSVYGLNEQMPFSTSHSVNHPVSLYAATKKSNELMAHT  180
            GFMN+LE  RH  ++NL YASSSSVYG N   PFSTS++++HP+SLYAATKKSNELMAHT
Sbjct  105  GFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHT  164

Query  181  YAHLYGMQCTGLRFFTVYGPWGRPDMAPFIFTKAALKGDTIKVFNNGKMKRDFTYIDDIV  240
            Y+HLY +  TGLRFFTVYGPWGRPDMA F FTKA +++++I V+N+G+M RDFTY+DDIV
Sbjct  165  YSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIV  224

Query  241  EGVVRVIENPCKASSEWSGKQPDPSSSSAPYKIYNIGNSQPIELMTFIEAVENAAGVEIP  300
            E++ R++ +P  ++ EWSG +PDP+SS APYK+YNIGN+ P+ LM F+EA+EN  G E  
Sbjct  225  EAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEAR  284

Query  301  KDFQPIQPGDVVATYADVSELESDMGYRPSTPVTEGMKRTVDWYRNFY  348
            K++  +QPGDV  TYA+V +L  D++++P T + +G+++ VDWY ++Y
Sbjct  285  KNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

249) IL0564 in NC_006512


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  341 bits (1280),  Expect = 3e-95, Method: Compositional matrix adjust.
 Identities = 198/348 (57%), Positives = 266/348 (77%), Gaps = 16/348 (4%)

Query  1    MKVLVTGTAGFIGFYTALKLLKQGHTVVGLDSINDYYDVNLKYGRLQESGIKQSNIEYGA  60
            MK+L+TGTAGFIG   A KL+KQGH V+G+DSINDYY V+LK +RL+  G          
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE--------  52

Query  61   TVQSGLYPDYSFVQLKLEDKPALDALFEQEQFDAVCNLAAQAGVRYSLENPNAYIDSNIV  120
                    +++F ++KLE+   L  +F +EQ + V NLAAQAGVRYS+ENP +YIDSNIV
Sbjct  53   --------NFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIV  104

Query  121  GFMNVLEACRHNGVKNLSYASSSSVYGLNEQMPFSTSHSVNHPVSLYAATKKSNELMAHT  180
            GFMN+LE  RH  ++NL YASSSSVYG N   PFSTS++++HP+SLYAATKKSNELMAHT
Sbjct  105  GFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHT  164

Query  181  YAHLYGMQCTGLRFFTVYGPWGRPDMAPFIFTKAALKGDTIKVFNNGKMKRDFTYIDDIV  240
            Y+HLY +  TGLRFFTVYGPWGRPDMA F FTKA +++++I V+N+G+M RDFTY+DDIV
Sbjct  165  YSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIV  224

Query  241  EGVVRVIENPCKASSEWSGKQPDPSSSSAPYKIYNIGNSQPIELMTFIEAVENAAGVEIP  300
            E++ R++ +P  ++ EWSG +PDP+SS APYK+YNIGN+ P+ LM F+EA+EN  G E  
Sbjct  225  EAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEAR  284

Query  301  KDFQPIQPGDVVATYADVSELESDMGYRPSTPVTEGMKRTVDWYRNFY  348
            K++  +QPGDV  TYA+V +L  D++++P T + +G+++ VDWY ++Y
Sbjct  285  KNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

250) N175_02300 in NC_022223


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  341 bits (1279),  Expect = 3e-95, Method: Compositional matrix adjust.
 Identities = 187/334 (56%), Positives = 262/334 (79%), Gaps = 0/334 (0%)

Query  1    MKYLVTGAAGFIGSATAEKLLAAGHEVVGIDNINDYYDMSLKQARLDRIQHANFRFIVLD  60
            MK L+TG+AGFIGS  A KL+  GH V+G+D+INDYY +SLK+ RL  I   NF F  + 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  61   IADRQSVEALFAEHQFDRVIHLAAQAGVRYSIENPHAYADSNLVGHLNILEGCRQNQVKH  120
            + + + +  +F ++Q + V++LAAQAGVRYSIENP++Y DSN+VG +NILE  R+ ++++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  121  LIYASSSSVYGLNAKVTFETSDSVDHPVSLYAATKKSNELMAHSYSHLYDIPTTGLRFFT  180
            LIYASSSSVYG N+   F TSD++DHP+SLYAATKKSNELMAH+YSHLY++PTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  181  VYGPWGRPDMAPFIFTKKILDGETIDINNNGDMWRDFTYIDDIIEGVVRIADVIPTRNPQ  240
            VYGPWGRPDMA F FTK I+++++ID+ N+G+M RDFTY+DDI+E++ R+    ++ N +
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  241  WTVEAGTPASSSAPYAVYNIGHGSPISLMDFIKAIEDELGIEAKKNFREMQAGDVYQTYA  300
            W+     P+SS APY VYNIG+ SP+ LM+F+ AIE+ LG EA+KN+ ++Q+GDV +TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  301  ETTDLFAATGYTSKVSVKEGVAKFVQWYREFYNK  334
            +  DLF   ++ +  ++++GV KFV+WY E+Y+K
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

251) Cyan8802_3926 in NC_013161


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  340 bits (1278),  Expect = 4e-95, Method: Compositional matrix adjust.
 Identities = 197/333 (60%), Positives = 265/333 (80%), Gaps = 10/333 (3%)

Query  3    NILITGAAGFIGFHLSQKLLHQGATIIGIDNINSYYDVSLKKARLQQIETDKNFRFYQLD  62
            +ILITG+AGFIG HL++KL+ QG  +IG+D+IN YY VSLK  RL+ I  + NF F ++ 
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKVK  60

Query  63   IANRKTISELFTQHTFDYVIHLAAQAGVRYSLENPHAYVDSNLVGFVNILEGCRHSHIKH  122
            + N   +S +F ++  + V++LAAQAGVRYS+ENP++Y+DSN+VGF+NILE  RH +I++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  123  LVYASSSSVYGANKKIPFSTEDNVDHPMSLYAATKKANELMAYTYSHLYRLPTTGLRFFT  182
            L+YASSSSVYGAN   PFST DN+DHP+SLYAATKK+NELMA TYSHLY LPTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  183  VYGPWGRPDMAYFMFTKAILAGEPIKVFNNGKMKRDFTYIDDIVEGIIRVMKRIPNP---  239
            VYGPWGRPDMA F FTKAI+ +++I V+N+G+M RDFTY+DDIVE+I R++K+ ++P   
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  240  ---LESELG---VPYKVYNIGNNQPVELLKFIEILETCLGKKAIKNFLPMQPGDVPMTYA  293
                +++ G    PYKVYNIGNN PV L+ F+E +E  LGK A KN++ +QPGDVP TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  294  DIDDLMKDVGFRPDTPLEIGLEKFVSWYQTYYQ  326
            ++DDL +D++F+P+T ++ G++KFV WY  YY+
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

252) NE2277 in NC_004757


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  340 bits (1277),  Expect = 5e-95, Method: Compositional matrix adjust.
 Identities = 205/334 (62%), Positives = 272/334 (82%), Gaps = 1/334 (0%)

Query  1    MKVLITGSAGFIGSTLALRLLERGDTVIGIDNHNDYYDPKLKEDRLARFADHPDYTHLRL  60
            MK+LITG+AGFIGS LA +L+ +G+ VIG+D+ NDYY   LKEDRL  ++ + ++T  ++
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKV  59

Query  61   DLADREGIKTCFETYKPQRVVNLAAQAGVRYSIENPLAYIDSNIVGFAHILEGCRHNDVE  120
             L + +++   F   +P+ VVNLAAQAGVRYSIENP +YIDSNIVGF +ILE  RH +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGANTMMPFSVHHNIDHPLSLYAASKKSNELMAHTYSHLYNLPTTGLRFF  180
            +L+YASSSSVYGANT  PFS  +NIDHPLSLYAA+KKSNELMAHTYSHLYNLPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTRAMLAGEKIPVFNYGKHRRDFTYVDDIVEGVIRVLDQPARSNP  240
            TVYGPWGRPDMALFKFT+A++ ++ I V+N G+  RDFTYVDDIVE++ R++ +PA +N 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  AWSGANPDAGTSLAPWRVYNIGNNSPVELMDYIaalekalgkkaememLPLQPGDVPDTY  300
             WSGA+PD+G+S AP +VYNIGNNSPV LM+++ A+E+ LGK A  + + LQPGDVP+TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADVSDLVEQFDYKPATPVEQGIANFVTWYRNYFN  334
            A+V DL  ++D+KP T +++G+ +FV WY +Y++
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

253) PBPRA2676 in NC_006370


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  340 bits (1277),  Expect = 5e-95, Method: Compositional matrix adjust.
 Identities = 193/335 (58%), Positives = 262/335 (79%), Gaps = 1/335 (0%)

Query  1    MNFLVTGAAGFIGAAVCKKLILDGCNVIGLDNKCDYYDVNLKEARLSELSQYGDFTFLKE  60
            M++L+TG+AGFIG+ + KKLI +G  VIG+D+  DYY V+LKE RL  +++  +FTF K 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DLCNNDGINSIFLENKFDRVIHLGAQAGVRYSIENPMAYADSNIIGHLNILEACRHHKIE  120
             L N D+++ +F++++ + V++L+AQAGVRYSIENP +Y DSNI+G +NILE  RH +I+
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGLNEKTPFETSDSVDHPVSLYAATKKSNELMSHSYSHLYNIPTTGLRFF  180
            +L+YASSSSVYG N   PF TSD++DHP+SLYAATKKSNELM+H+YSHLYN+PTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMAPFIFTKKILDGDTIDINNNGEMWRDFTYIDDIVEGVIRIADVIPTRND  240
            TVYGPWGRPDMA F FTK I+++++ID+ N+G+M RDFTY+DDIVE++ R+    ++ N 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  EWKVETGTPASSSAPYAVYNIGHGSPINLMEFISEIENTLGIEAKKNYRGMQAGDVYKTY  300
            EW      P+SS APY VYNIG+ SP+ LMEF+  IEN LG EA+KNY ++Q+GDV  TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTSDLFEAIGYTPKVGVKEGVAAFVKWYKEFYNK  335
            A+  DLF  I++ P   +++GV  FV WY E+Y+K
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

254) Nit79A3_1528 in NC_015731


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  340 bits (1276),  Expect = 6e-95, Method: Compositional matrix adjust.
 Identities = 188/334 (57%), Positives = 270/334 (81%), Gaps = 1/334 (0%)

Query  1    MKILVTGVAGFIGMHIALKLLARGDNVVGIDNLNDYYDINLKKDRLSRLTTHSKFSFYQI  60
            MKIL+TG AGFIG H+A KL+ +G+ V+G+D++NDYY ++LK DRL  +  ++ F+F ++
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKEN-FTFNKV  59

Query  61   DISDRSRMSEIFMREKSKRIIHLAAQAGVRYSLSNPYIYIDSNIQGFINILEGCRQHQVE  120
             + +   +S +F+ E++  +++LAAQAGVRYS+ NP  YIDSNI GF+NILE  R+ +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGGNTSLPFNEHQNIDHPISLYAATKKANELMAHTYSHLFRLPTTGLRFF  180
            +L+YASSSSVYG+NTS PF+  +NIDHP+SLYAATKK+NELMAHTYSHL+ LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFLFTRAMLEGRAIDVFNHGRIIRDFTYIDDIVEGVIRVLDKPAESDT  240
            TVYGPWGRPDMALF FT+A+++++AIDV+NHG ++RDFTY+DDIVE++ R++ KPA ++ 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  AFDSSHPDPATSHAPYRIFNMGNSQPVRILECISILENVLGIVAKKNFLPMQLGDVQTTF  300
               +++PDP++S APY+++N+GN+ PVR++E +  +EN LG  A+KN++ +Q GDV  T+
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADNDDLDKWIGFKPHTPLPVGLAHFVDWYKSYYK  334
            A+ DDL + I+FKP+T +  G+  FVDWY  YYK
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

255) BRADO5153 in NC_009445


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  340 bits (1275),  Expect = 8e-95, Method: Compositional matrix adjust.
 Identities = 184/332 (56%), Positives = 261/332 (79%), Gaps = 1/332 (0%)

Query  6    ILVTGAAGFIGFHLTQQLLAEGRQVVGLDNINSYYDPTLKEARLALLQAQPGFSFHKLDL  65
            IL+TG+AGFIG HL+++L+ +G+ V+G+D+IN YY  +LKE RL  + ++  F+F+K+ L
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKVKL  61

Query  66   VDRAAIKALFAAHRFPAVVHLAAQAGVRYSLENPHAYVDANLEGFINVLEGCRHHGCGHL  125
             +   +  +F  ++   VV+LAAQAGVRYS+ENP++Y+D+N+ GF+N+LE  RH    +L
Sbjct  62   ENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNL  121

Query  126  LFASSSSVYGANTKLPFSVKDNVDHPISLYAASKKANELMAHSYSHLYRLPATGLRFFTV  185
            ++ASSSSVYGANT  PFS  DN+DHP+SLYAA+KK+NELMAH+YSHLY LP+TGLRFFTV
Sbjct  122  IYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTV  181

Query  186  YGPWGRPDMAMFIFAKAILAGQPVRLFNHGQMRRDFTYVDDIVQAIVRLIGRPPQGNPDW  245
            YGPWGRPDMA+F F+KAI+ +Q++ ++NHG+M RDFTYVDDIV+AI RL+ +P+  N +W
Sbjct  182  YGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEW  241

Query  246  NGNTPDPSSSRAPWRIYNIGNNHPEQLTDVITLLEKEFGRPAIKEMLPMQPGDVEATYAD  305
            +G  PDP+SS AP ++YNIGNN P +L + +  +E+ +G+ A K+ + +QPGDV  TYA+
Sbjct  242  SGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYAN  301

Query  306  VSDLERDIGFRPATSIVDGIARFARWYRDYHR  337
            V DL RDI+F+P T+I DG+ +F  WY +Y +
Sbjct  302  VDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

256) Suden_0894 in NC_007575


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  339 bits (1273),  Expect = 1e-94, Method: Compositional matrix adjust.
 Identities = 196/349 (57%), Positives = 275/349 (79%), Gaps = 16/349 (4%)

Query  1    MKILVTGTAGFIGYHLAKELLLRGDEVVGLDNINDYYDVKLKYARLKELGIDKDDIKDNQ  60
            MKIL+TGTAGFIG HLAK L+ +G+ V+G+D+INDYY V LK  RLK +G +        
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE--------  52

Query  61   LTQSKTYPNHKFIKANLEDAETINRLFKEEKFDALCNLAAQAGVRYSIENPHAYIQSNVV  120
                    N  F K +LE+ + ++++F +E+ + + NLAAQAGVRYSIENP++YI+SN+V
Sbjct  53   --------NFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIV  104

Query  121  GFLNLLEACRNYDVKNFAFASSSSVYGLNKSQPFKSSDHSDHPVSLYAATKKSNEMMAHT  180
            GF+N+LE  R+++++N+ +ASSSSVYG N S+PF +SD+ DHP+SLYAATKKSNE+MAHT
Sbjct  105  GFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHT  164

Query  181  YAHLYGLHCTGLRFFTVYGEWGRPDMAPMLFADAILNDRAIKVFNHGNMSRDFTYVGDIV  240
            Y+HLY L  TGLRFFTVYG WGRPDMA   F+ AI+ND+AI V+NHGNM RDFTYV+DIV
Sbjct  165  YSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIV  224

Query  241  EGVIKVIDNQSTPSQKFDAATPNPSISSAPYKIYNIGNNSPVQLLDFIKTLENAIGKEAQ  300
            E++ +++ + ++P++   +A P+P+ S APYK+YNIGNNSPV+L++F+ ++EN +GKEA+
Sbjct  225  EAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEAR  284

Query  301  KNFLPMQDGDVVSTYADVTDLMNDFGYKPETSLKVGIEKFVKWYREFYK  349
            KN++ +Q GDV  TYA+V DL  D+++KPET+++ G++KFV WY E+YK
Sbjct  285  KNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

257) A35E_00433 in NC_018420


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  339 bits (1272),  Expect = 1e-94, Method: Compositional matrix adjust.
 Identities = 181/334 (55%), Positives = 265/334 (80%), Gaps = 1/334 (0%)

Query  1    MKFLVTGAAGFIGYHVSIRLLNDGYQVVGIDNLSNYYDVALKKARLIELSTYKTFRFKKI  60
            MK+L+TG+AGFIG H++ +L+++G  V+G+D++++YY V+LK  RL  ++    F F+K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DLVDRTSVISLFSGERFTQVIHLAGQGGVRYSLDNPLAYGDANLIGYLNVLEGCRHNKVQ  120
             L +   +  +F +E+   V++LA+Q+GVRYS++NP +Y D+N++G++N+LE  RH ++Q
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLLYASSSSVYGLNRKLPFSTDDTVDHPISLYAATKKSNELMAHAYAHLYKLPTTGLRFF  180
            +L+YASSSSVYG N   PFST D +DHP+SLYAATKKSNELMAH+Y+HLY+LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TAYGPWSRPDMALFKFTKAIINGKRIDVYNCGKMLRDFTYIDDIVESIIRLQSVIPVQDN  240
            T YGPW+RPDMALFKFTKAI+N++ IDVYN G+M+RDFTY+DDIVE+I RL    +  ++
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  TWTVETGSTAVSSAPYCIYNIGNSQPVKLMDYIEALEDALGIKAKKNLLPMQPGDLLETS  300
             W+      + S APY +YNIGN+ PV+LM+++EA+E+ LG  A+KN + +QPGD+ ET 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADIQPLYQAIGFKPETSITEGVKRFVRWYTDYYQ  334
            A+++ L++ I+FKPET+I +GV++FV WY +YY+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

258) Pfl01_4071 in NC_007492


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  339 bits (1274),  Expect = 8e-95, Method: Compositional matrix adjust.
 Identities = 181/334 (55%), Positives = 268/334 (81%), Gaps = 1/334 (0%)

Query  1    MKILVTGAAGFIGFHVSQALLARGDEVVGIDNLNDYYEVALKDARLAQLTPQEGFRFIRM  60
            MKIL+TG+AGFIG H+++ L+ +G+ V+G+D++NDYY V+LK+ RL  +  +E F F ++
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG-KENFTFNKV  59

Query  61   DIGDRTAMAELFETEGFEKVVHLAAQAGVRYSLENPHAYADSNLTGFLNVLEGCRQTHVK  120
             + +   ++ +F  E  E VV+LAAQAGVRYS+ENP++Y DSN+ GF+N+LE  R+ +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGANESMPFAVQDNVDHPVSLYAATKKANELMAHSYSHLYRLPTTGLRFF  180
            +L+YASSSSVYGAN S PF+  DN+DHP+SLYAATKK+NELMAH+YSHLY LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMSPFLFVRAILEGKPLKVFNYGKHRRDFTYIDDIVDGVIRVLDHVAAPNA  240
            TVYGPWGRPDM+ F F +AI++++++ V+N G+  RDFTY+DDIV+++ R++   A+PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  QWSGLKPDPASSAAPWRLYNIGNSQPVELLDYIKHIEQALGKTTHKELLPLQPGDVEHTY  300
            +WSG  PDP+SS AP ++YNIGN+ PV L++++  IE+ LGK ++K+ + LQPGDV +TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADVEQLKIDTGYAPDTPIESGIQRFVNWYKDFYN  334
            A+V++L  D ++ P+T I+ G+++FV+WY ++Y+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

259) Neut_0225 in NC_008344


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  338 bits (1269),  Expect = 2e-94, Method: Compositional matrix adjust.
 Identities = 200/334 (60%), Positives = 271/334 (82%), Gaps = 1/334 (0%)

Query  1    MKILITGSAGFIGSALTLRLLERGDTVIGIDNHNDYYDPQIKEDRLARFADHPAYTHLRL  60
            MKILITG+AGFIGS L+ +L+ +G+ VIG+D+ NDYY   +KEDRL  ++ +  +T  ++
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKV  59

Query  61   DLADREGINSCFEMHKPQRVVNLAAQAGVRYSIENPLAYIDSNIVGFAHILEGCRHNGVE  120
             L + ++++  F  ++P+ VVNLAAQAGVRYSIENP +YIDSNIVGF +ILE  RH  ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGANTQMPFSVHHNVDHPLSLYAASKKSNELMAHTYSHLYNLSTAGLRFF  180
            +L+YASSSSVYGANT  PFS  +N+DHPLSLYAA+KKSNELMAHTYSHLYNL+T+GLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTKAILAGEKIPVFNYGKHRRDFTYVDDIVEGVIRVLDQPTRPDP  240
            TVYGPWGRPDMALFKFTKAI+ ++ I V+N G+  RDFTYVDDIVE++ R++ +P+ P+ 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  AWSGENPDAGTSMAPWRVYNIGNNSPVELMDYIaalekalgkkaamemlPLQPGDVPDTY  300
             WSG +PD+G+S AP +VYNIGNNSPV LM+++ A+E+ LGK A  + + LQPGDVP+TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADVSDLVEQFDYRPATSVEQGIASFVTWYRNYFN  334
            A+V DL  ++D++P T++++G+  FV WY +Y++
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

260) Echvi_2328 in NC_019904


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  338 bits (1269),  Expect = 2e-94, Method: Compositional matrix adjust.
 Identities = 201/349 (58%), Positives = 271/349 (78%), Gaps = 20/349 (5%)

Query  1    MKFLVTGVAGFIGHGLSKKLLQEGHQVVGIDSINDYYDVNLKLARLKDLGIDDAPISEHQ  60
            MK+L+TG AGFIG  L+KKL+++GH V+G+DSINDYY V+LK  RLK +G ++       
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKEN-------  53

Query  61   KVASTDKSCFEFVKMKLEDGDEMNALFEAERFDIVVNLAAQAGVRYSLENPRAYVDANIV  120
                     F F K+KLE+ D+++ +F  E+ ++VVNLAAQAGVRYS+ENPR+Y+D+NIV
Sbjct  54   ---------FTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIV  104

Query  121  GFVNLLEACRHHPVKHLVYASSSSVYGANKKMPFSTSDNVDHPVSLYAASKKSNELMAHT  180
            GF+N+LE  RH  +++L+YASSSSVYGAN   PFSTSDN+DHP+SLYAA+KKSNELMAHT
Sbjct  105  GFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHT  164

Query  181  YSHLYGVPTTGLRFFTVYGPWGRPDMALFIFTKAILNGKPLKVFNYGKMKRDFTYVDDIV  240
            YSHLY +PTTGLRFFTVYGPWGRPDMALF FTKAI+N++++ V+N G+M RDFTYVDDIV
Sbjct  165  YSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIV  224

Query  241  EGVYRTALVPPKGQQE--GDKEDLSG--APYRLFNIGNSKSVNLMDFIRAIEKATGKEAV  296
            E++ R    P+  ++E  G   D ++  APY+++NIGN+ +V LM+F+ AIE+  GKEA 
Sbjct  225  EAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEAR  284

Query  297  LEMLPMQPGDVPATYADVSALSEVTGYKPNTRVEDGVANFVNWYRDYYQ  345
             + + +QPGDVP TYA+V  L    ++KP+T ++DGV +FV+WY +YY+
Sbjct  285  KNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

261) Dacet_2391 in NC_013943


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  338 bits (1267),  Expect = 3e-94, Method: Compositional matrix adjust.
 Identities = 198/353 (57%), Positives = 268/353 (76%), Gaps = 23/353 (6%)

Query  1    MKILVTGTAGFIGHHTALKLALRGDDVIGLDNINDYYDVRVKYGRLKNSGIIKNIADGEF  60
            MKIL+TGTAGFIG H A KL  +G+ VIG+D+INDYY V +K +RLK+ G          
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK---------  51

Query  61   FPYAEPVRSSVYPTYRFVKINLEDRENITKLFETEKFDAVCHLAAQAGVRYSIDNPHAYI  120
                          + F K++LE+ ++++K+F  E+ + V +LAAQAGVRYSI+NP++YI
Sbjct  52   ------------ENFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYI  99

Query  121  KSNIDGFMNILESCRHTGVKNLCFASSSSVYGLNKEIPFKTSHSVDHPISLYAATKKSNE  180
             SNI GFMNILE  RH  ++NL +ASSSSVYG N   PF TS+++DHP+SLYAATKKSNE
Sbjct  100  DSNIVGFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNE  159

Query  181  MMAHTYSHLFDIHTTGLRFFTVYGPWGRPDMALFIFTKAALEGKPINVFNNGEMFRDFTY  240
            +MAHTYSHL+++ TTGLRFFTVYGPWGRPDMALF FTKA +++++I+V+N+G+M RDFTY
Sbjct  160  LMAHTYSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTY  219

Query  241  IDDIVEGVVRVLDNPAKPDADFNGTDPSTSS--APYKIYNIGNSVPVNLMDFIKAIEAKL  298
            +DDIVE++ R++ +PA P+ + +G+DP  +S  APYK+YNIGN+ PV LM+F+ AIE KL
Sbjct  220  VDDIVEAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKL  279

Query  299  GKTIEKNMMPIQPGDLHTTYADASDLTLHTGYKPSTSIEDGVGRFIDWYLDFY  351
            GK   KN M +QPGD+  TYA+  DL  + ++KP T+I+DGV +F+DWYL++Y
Sbjct  280  GKEARKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

262) MU9_2318 in NC_020418


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  338 bits (1267),  Expect = 3e-94, Method: Compositional matrix adjust.
 Identities = 190/334 (57%), Positives = 265/334 (80%), Gaps = 1/334 (0%)

Query  1    MKILVTGAAGFIGYHVSQRLLEQGHEVVGADNLNDYYDVNLKQARLDLLLPHPQFQFFKM  60
            MKIL+TG+AGFIG H++++L+ QGH V+G D++NDYY V+LK+ RL  +    +F F K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  61   DLSEKAAVSELFAAQKFERVIHLAAQPGVRYSIQNPMAYIDANILGHMNILEGCRHHNVG  120
             L +   +S +F  ++ E V++LAAQ+GVRYSI+NP +YID+NI+G MNILE  RH N+ 
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLIYSSSSSVYGLNRKQPFSVEDDVDHPVSLYAATKKANELMSHSYSHLYHLPTTGLRFF  180
            +LIY+SSSSVYG N  +PFS  D++DHP+SLYAATKK+NELM+H+YSHLY+LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFVKAMLDGKPIDVYNHGNMVRDFTYVGDIaeavvrlvdvvpavNN  240
            TVYGPWGRPDMALFKF KA++++++IDVYNHGNM+RDFTYV+DI EA+ RLV   ++ N+
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWTVEEGLKSASSAPYKIYNVGNGQPTRLGDFIQAIETALDIKADKHYMDMQDGDVLSTC  300
            +W+  +   ++S APYK+YN+GN  P RL +F++AIE  L+  A K+YMD+Q GDV  T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADSSELYKTIGFSPDTPVNYGVQQFVDWYMSFYH  334
            A+  +L++ I+F P+T ++ GV++FVDWY+ +Y 
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

263) Mesop_5473 in NC_015675


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  338 bits (1268),  Expect = 3e-94, Method: Compositional matrix adjust.
 Identities = 175/338 (52%), Positives = 259/338 (77%), Gaps = 6/338 (1%)

Query  1    MKVLVTGAAGFIGYHVARRLLERGDEVVGVDSINDYYDPRLKQARLRLLAEASRSTNAGY  60
            MK+L+TG+AGFIG H+A++L+ +G+ V+GVDSINDYY   LK+ RL+ ++      +  +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG------KENF  54

Query  61   HFIHGNLADRTVVDGCFAEHAFDRVIHLAAQAGVRYSLENPRAYVESNIVAFTNMLEACR  120
             F   +L +   +   F ++  + V++LAAQAGVRYS+ENPR+Y++SNIV+F N+LE  R
Sbjct  55   TFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSR  114

Query  121  HSRVGHLTYASTSSVYGANTDMPFSEHRPADHPLQFYAATKRANELMAHSYSHLFGLPTT  180
            H  + +L YAS+SSVYGANT  PFS     DHPL +YAATK++NELMAH+YSHL+ LPTT
Sbjct  115  HFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTT  174

Query  181  GLRFFTVYGPWGRPDMALFLFTRSILAGEPVKLFNNGNHTRDFTYVEDIAEGVVRASDSP  240
            GLRFFTVYGPWGRPDMALF FT++I+ ++++ ++N+GN  RDFTYV+DI E++ R    P
Sbjct  175  GLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKP  234

Query  241  AAANPAWDSGHPDPATSSAPWRIFNIGNNNPVKLAAYVEALENALGRKAIVEFLPLQAGD  300
            A++N  W +++PDP++S AP +++NIGNN+PV+L  +VEA+EN LG+ A  +++ LQ+GD
Sbjct  235  ASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGD  294

Query  301  VPDTFADTSALQQAVGYRPGTSVSEGVGRFVEWYLAYF  338
            VP+T+A+   L + ++++P T++ +GV +FV+WYL Y+
Sbjct  295  VPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

264) wcaG in NC_014366


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  337 bits (1265),  Expect = 4e-94, Method: Compositional matrix adjust.
 Identities = 203/334 (61%), Positives = 270/334 (81%), Gaps = 1/334 (0%)

Query  1    MKILVTGAAGFIGSTLAHRLLARGDEVIGYDNINDYYDVSLKHARLDRLRSHAGFSFMQA  60
            MKIL+TG+AGFIGS LA +L+ +G+ VIG D+INDYY VSLK+ RL  + +   F+F + 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  61   SLEDRKALDDVFRKYQPQRVVNLAAQAGVRYSIENPQAYLDANLQGFLNILEGCRHHKVE  120
             LE+   L  VF   QP+ VVNLAAQAGVRYSIENP++Y+D+N+ GF+NILE  RH +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVFASSSSVYGANTKMPFSVSDTVDHPVSFYAATKKANELMAHTYSHLYQLPTTGLRFF  180
            +L++ASSSSVYGANT  PFS SD +DHP+S+YAATKK+NELMAHTYSHLY+LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFLFTKSILAGKPIQVFNHGHHRRDFTYIDDIIEGVVRTLDQVAVpdp  240
            TVYGPWGRPDMALF FTK+I+ +++I+V+NHG+  RDFTY+DDI+E++ R + + A P+ 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  dwsgdspdpATSKAPYRLYNIGSNRPVELLRYIEVLEDCLGKKAIKEMLPLQLGDVPDTY  300
            +WSG  PDP++S APY++YNIG+N PV L+ ++E +E+ LGK A K+ + LQ GDVP+TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ANVDALINDVGYKPGTPIEEGVRHFVDWYRSYYQ  334
            ANVD L+ D+++KP T I++GV  FVDWY  YY+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

265) Geoth_2066 in NC_015660


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  337 bits (1266),  Expect = 4e-94, Method: Compositional matrix adjust.
 Identities = 192/332 (58%), Positives = 260/332 (79%), Gaps = 15/332 (4%)

Query  8    IFITGCAGFIGFHLTKRLLDEGFSVLGMDDMNDYYDTSLKYDRLKIVMKHPHFRFVKGSI  67
            I+ITG AGFIG HL+K+L+ +G  V+G+D +NDYY  SLK DRLK + K+ +F F K  +
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKVKL  61

Query  68   ENIELLEKLFSQYDVDTVVNLAAQPGVRYSLKNPHKYIQANVVGFANILECCKKHKIRHL  127
            EN + L K+F + + + VVNLAAQ+GVRYS+ NP+ YI++N+VGF NILEC +  +I++L
Sbjct  62   ENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNL  121

Query  128  IYASSSSVYGNNKNAPFSVADRTDSPVSLYAATKKANELMAYTYSHLYRLPTTGLRFFTV  187
            IYASSSSVYG N + PFS +D  D P+SLYAATKK+NELMA TYSHLY LPTTGLRFFTV
Sbjct  122  IYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTV  181

Query  188  YGPWGRPDMALFKFANAIVKQQPIEIYNYGNMKRDFTYVDDVTESILRLIDKGPSTE---  244
            YGPWGRPDMALFKF++AIV++Q+I++YN GNM RDFTYVDD+ E+I RL+ K +S +   
Sbjct  182  YGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEW  241

Query  245  -----------SPYKIYNIGNNQPVQLNYFIEVLEEHLGKKAIKKLLPMQPGDVPETFAD  293
                       +PYK+YNIGNN PV+L  F+E +E+ LGK A K+ + +QPGDVPET+A+
Sbjct  242  SGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYAN  301

Query  294  IDELVKDINYKPKVSIEEGIKRFVEWFKDYYK  325
            +D+L +DI++KP  +I++G+++FV+W+ +YYK
Sbjct  302  VDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

266) GY4MC1_1976 in NC_014650


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  337 bits (1266),  Expect = 4e-94, Method: Compositional matrix adjust.
 Identities = 192/332 (58%), Positives = 260/332 (79%), Gaps = 15/332 (4%)

Query  8    IFITGCAGFIGFHLTKRLLDEGFSVLGMDDMNDYYDTSLKYDRLKIVMKHPHFRFVKGSI  67
            I+ITG AGFIG HL+K+L+ +G  V+G+D +NDYY  SLK DRLK + K+ +F F K  +
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKVKL  61

Query  68   ENIELLEKLFSQYDVDTVVNLAAQPGVRYSLKNPHKYIQANVVGFANILECCKKHKIRHL  127
            EN + L K+F + + + VVNLAAQ+GVRYS+ NP+ YI++N+VGF NILEC +  +I++L
Sbjct  62   ENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNL  121

Query  128  IYASSSSVYGNNKNAPFSVADRTDSPVSLYAATKKANELMAYTYSHLYRLPTTGLRFFTV  187
            IYASSSSVYG N + PFS +D  D P+SLYAATKK+NELMA TYSHLY LPTTGLRFFTV
Sbjct  122  IYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTV  181

Query  188  YGPWGRPDMALFKFANAIVKQQPIEIYNYGNMKRDFTYVDDVTESILRLIDKGPSTE---  244
            YGPWGRPDMALFKF++AIV++Q+I++YN GNM RDFTYVDD+ E+I RL+ K +S +   
Sbjct  182  YGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEW  241

Query  245  -----------SPYKIYNIGNNQPVQLNYFIEVLEEHLGKKAIKKLLPMQPGDVPETFAD  293
                       +PYK+YNIGNN PV+L  F+E +E+ LGK A K+ + +QPGDVPET+A+
Sbjct  242  SGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYAN  301

Query  294  IDELVKDINYKPKVSIEEGIKRFVEWFKDYYK  325
            +D+L +DI++KP  +I++G+++FV+W+ +YYK
Sbjct  302  VDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

267) Hipma_1401 in NC_015318


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  337 bits (1265),  Expect = 4e-94, Method: Compositional matrix adjust.
 Identities = 201/348 (58%), Positives = 265/348 (77%), Gaps = 16/348 (4%)

Query  1    MKILITGTAGFIGFHLANKLAKDGFEIVGIDNINDYYDVGLKYARLKESGIEEAKIEYSR  60
            MKILITGTAGFIG HLA+KL K+G  ++G+D+INDYY V+LK  RLK  G E        
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE--------  52

Query  61   PVRSSKYNNYTFVRLDLKDKEGVDALFKDFGFDAVCNLAAQAGVRYSLKNPYSYIDSNIY  120
                    N+TF ++ L + +++  +F D   + V NLAAQAGVRYS+ NP +YIDSNI 
Sbjct  53   --------NFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIV  104

Query  121  GFLNILEACRHFGVENLSFASSSSVYGLNKKQPFSEKHNVDHPISLYAATKKSNELMAHT  180
            GF+NILE  RHF ++NL +ASSSSVYG N  +PFS  +N+DHP+SLYAATKKSNELMAHT
Sbjct  105  GFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHT  164

Query  181  YSYLYGLRITGLRFFTVYGPWGRPDMALFRFVKNILEDKPIDVYNYGKMERDFTYIDDIV  240
            YS LY L  TGLRFFTVYGPWGRPDMALF+F K I++D++IDVYN G+M RDFTY+DDIV
Sbjct  165  YSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIV  224

Query  241  EGIVRVIKNPAKPNEEWNALNPDPSSSKVAYRIYNIGNNSPVSLDMFIKIIEKELGRRAK  300
            E+I R++K+PA PN EW++ +PDP+SS  +Y++YNIGNNSPV L  F+  IE+ LG+ A+
Sbjct  225  EAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEAR  284

Query  301  KNLLPMQPGDVESTYADVSALIEELNYKPHTPPEIGIKNFIEWYRSFY  348
            KN + +QPGDV  TYA+V  L+ ++++KP+T  + G+++F++WY  +Y
Sbjct  285  KNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

268) Csal_1760 in NC_007963


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  337 bits (1265),  Expect = 4e-94, Method: Compositional matrix adjust.
 Identities = 176/332 (54%), Positives = 262/332 (79%), Gaps = 3/332 (0%)

Query  1    MNILITGMAGFIGHAVAKRLAAEGHDIVGIDNLNDYYDVSLKQARLDDLAAWPNVRFERL  60
            M+ILITG AGFIG  +AK+L  +GH ++G+D++NDYY VSLK+ RL  ++   N  F+++
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DLADRAGMERLFADTRFERVIHLAAQAGVRYSLDNPHVYAQSNLVGHLNVLEGCRHQQVP  120
             L +  ++ ++F D + E V++LAAQAGVRYS++NP+ Y +SN+VG +N+LE  RH ++ 
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLIYASSSSVYGQNAQVPFSTADAVDHPISLYAATKKANELMTHSYSHLYGIPATGLRFF  180
            +LIYASSSSVYG N+  PFST+D +DHP+SLYAATKK+NELM+H+YSHLY +P+TGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMAMFKFTRAILADEPLPVFNHGDLSRDFTYIDDIVEGVVRIMQAIPEADP  240
            TVYGPWGRPDMA+FKFT+AI+ D+++ V+NHG++ RDFTY+DDIVE++ R+++  + ++ 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DSPGASPDQST--APFALYNIGHGSPVALMDFVHALERATGRTARCDFKPMQPGDVPRTW  298
            + +GA PD ++  AP+ +YNIG+ SPV LM+FV+A+E   G+ AR ++  +QPGDVP T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  299  ADTDALFEKVGYRPQVGVDEGVARFVEWYRSF  330
            A+ D LF  ++++P+  +++GV +FV+WY  +
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEY  331

269) Tbd_2699 in NC_007404


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  337 bits (1264),  Expect = 5e-94, Method: Compositional matrix adjust.
 Identities = 187/332 (57%), Positives = 265/332 (80%), Gaps = 1/332 (0%)

Query  1    MKILVTGAAGFIGMHVAQILLQRGDEVVGIDSLNDYYDPALKLARLEQLKPHPNFRFVRD  60
            MKIL+TG+AGFIG H+A+ L+++G+ V+G+DS+NDYY  +LK  RL  +    NF F + 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  61   DISDRMVMEDLFEKGHFDAVINLAAQAGVRYSLKNPHAYVQSNLVGFANLLEGCRHHGVK  120
             + +   +  +F   + + V+NLAAQAGVRYS+ NP++Y++SN+VGF N+LE  RH  ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HFVYASSSSVYGANTKIPFSTHDPVNHPVSLYAASKKANELMAHTYSHLYGLPTTGLRYF  180
            +++YASSSSVYGANT  PFST D ++HP+SLYAA+KK+NELMAHTYSHLY LPTTGLR+F
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMSPWLFTSAILEGRSIDVFNHGDMMRDFTYIDDIADGTVKVLDRIPQPDP  240
            TVYGPWGRPDM+   FT AI+++++IDV+NHG+MMRDFTY+DDI ++  +++ + + P+ 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  NFDHANPDPASSHAPYRVYNIGNHTPVQLMDFIGTIEKALGQEARKNFLPMQDGDVKMTY  300
            +   A+PDP+SS APY+VYNIGN++PV+LM+F+ +IE+ LG+EARKN++ +Q GDV  TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADVDDLIRDTGFKPATTLEYGIGKWVEWYRGY  332
            A+VDDL+RD +FKP TT++ G+ K V+WY  Y
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEY  331

270) LFML04_0804 in NC_018649


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  337 bits (1263),  Expect = 6e-94, Method: Compositional matrix adjust.
 Identities = 188/334 (57%), Positives = 263/334 (79%), Gaps = 1/334 (0%)

Query  1    MKILVTGAAGFIGSTLAFRLLCEGHDVVGVDNMNDYYEVSLKEARLARLQSHSRFTFHRL  60
            MKIL+TG+AGFIGS LA +L+ +GH V+GVD++NDYY VSLKE RL  + +   FTF+++
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  61   DIVDRNRLLDLFRRENFPAVYHLAAQVGVRYALENPFAYIDTNLAGFGNILEGSLRSNTR  120
             + + + L  +F  E+   V +LAAQ GVRY++ENP +YID+N+ GF NILE S + N +
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLIYASSSSVYGANVRQPFSEHHPTEHPISLYAATKKANELMAHSYAHIHGLPVTGLRFF  180
            +LIYASSSSVYGAN  +PFS  +  +HP+SLYAATKK+NELMAH+Y+H+  LP TGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFARLIVEGQSIPVYGEGNMIRDFTYVDDIVESLVRLLDKPPVPSP  240
            TVYGPWGRPDMALFKF++ IV++Q+I VY +GNM+RDFTYVDDIVE++ RL+ KP+ P+ 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWDARAADSATSHAPYRIYNIGNKNPVPLMRYIEVLEECLGRKAVKEFLPVQPGDMTSTW  300
            +W +  +D+++S APY++YNIGN++PV LM ++E +E+ LG+ A K+++ +QPGD+  T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTAELEALTGFTPNTSIETGIRRFVDWYLEYYK  334
            A+  +L    +F P+T+I+ G+ +FVDWYLEYYK
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

271) wcfX in NC_003228


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  336 bits (1261),  Expect = 1e-93, Method: Compositional matrix adjust.
 Identities = 187/349 (54%), Positives = 271/349 (78%), Gaps = 16/349 (4%)

Query  1    MNVLVTGAAGFIGSHVCKRLLQRGDEVVGLDNINSYYDINLKYGRLSSLGVPQSELSWYK  60
            M++L+TG+AGFIGSH+ K+L+++G+ V+G+D+IN YY ++LK +RL S+G  +       
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKEN-------  53

Query  61   FTRSNVYPRFSFVRMNLEDRQAMQMLFANGNFDVVINLAAQAGVRYSIENPYAYVESNID  120
                     F+F +++LE+ + +  +F + + +VV+NLAAQAGVRYSIENP +Y++SNI 
Sbjct  54   ---------FTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIV  104

Query  121  GFLNVLEGCRHSQVKHLVYASSSSVYGLNGQVPFSEKDGIAHPVSLYAATKKSNELMAHT  180
            GF+N+LE  RH ++++L+YASSSSVYG N   PFS  D I HP+SLYAATKKSNELMAHT
Sbjct  105  GFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHT  164

Query  181  YSHLYNIPSTGLRFFTVYGPWGRPDMSPFLFADAILHGRPIKVFNNGNMLRDFTYIDDIV  240
            YSHLYN+P+TGLRFFTVYGPWGRPDM+ F F+ AI+++++I V+N+GNM+RDFTY+DDIV
Sbjct  165  YSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIV  224

Query  241  EGVLRVADSIPEGNQCWDAEVADPSMSCAPYKIYNIGNSRPVKLMDFIRAIEMSIGREAD  300
            E++ R+    +  N+ W +  +DP+ S APYK+YNIGN+ PV+LM+F+ AIE  +G+EA 
Sbjct  225  EAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEAR  284

Query  301  KIYLPMQPGDVYQTYADTSSLSREIGFQPNTSLEAGVKKTISWYKEFYN  349
            K Y+ +QPGDV +TYA+   L R+I+F+P+T+++ GV+K + WY E+Y+
Sbjct  285  KNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

272) BF1838 in NC_006347


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  336 bits (1261),  Expect = 1e-93, Method: Compositional matrix adjust.
 Identities = 187/349 (54%), Positives = 271/349 (78%), Gaps = 16/349 (4%)

Query  1    MNVLVTGAAGFIGSHVCKRLLQRGDEVVGLDNINSYYDINLKYGRLSSLGVPQSELSWYK  60
            M++L+TG+AGFIGSH+ K+L+++G+ V+G+D+IN YY ++LK +RL S+G  +       
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKEN-------  53

Query  61   FTRSNVYPRFSFVRMNLEDRQAMQMLFANGNFDVVINLAAQAGVRYSIENPYAYVESNID  120
                     F+F +++LE+ + +  +F + + +VV+NLAAQAGVRYSIENP +Y++SNI 
Sbjct  54   ---------FTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIV  104

Query  121  GFLNVLEGCRHSQVKHLVYASSSSVYGLNGQVPFSEKDGIAHPVSLYAATKKSNELMAHT  180
            GF+N+LE  RH ++++L+YASSSSVYG N   PFS  D I HP+SLYAATKKSNELMAHT
Sbjct  105  GFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHT  164

Query  181  YSHLYNIPSTGLRFFTVYGPWGRPDMSPFLFADAILHGRPIKVFNNGNMLRDFTYIDDIV  240
            YSHLYN+P+TGLRFFTVYGPWGRPDM+ F F+ AI+++++I V+N+GNM+RDFTY+DDIV
Sbjct  165  YSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIV  224

Query  241  EGVLRVADSIPEGNQCWDAEVADPSMSCAPYKIYNIGNSRPVKLMDFIRAIEMSIGREAD  300
            E++ R+    +  N+ W +  +DP+ S APYK+YNIGN+ PV+LM+F+ AIE  +G+EA 
Sbjct  225  EAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEAR  284

Query  301  KIYLPMQPGDVYQTYADTSSLSREIGFQPNTSLEAGVKKTISWYKEFYN  349
            K Y+ +QPGDV +TYA+   L R+I+F+P+T+++ GV+K + WY E+Y+
Sbjct  285  KNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

273) BT_1342 in NC_004663


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  336 bits (1261),  Expect = 9e-94, Method: Compositional matrix adjust.
 Identities = 193/349 (56%), Positives = 272/349 (78%), Gaps = 16/349 (4%)

Query  1    MKVLVTGAAGFIGSFTSKKLLEQGHEVVGLDNLNDYYDTSLKYGRLANLGINKDEIGWYK  60
            MK+L+TG+AGFIGS  +KKL+ QGH V+G+D++NDYY  SLK +RL ++G ++       
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKEN-------  53

Query  61   YTRSSYYTAFNFIRMNLEDRQAVQMLFANGDFDCVCNLAAQAGVRYSIENPYAYIESNID  120
                     F F +++LE+ + +  +F + + + V NLAAQAGVRYSIENP +YI+SNI 
Sbjct  54   ---------FTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIV  104

Query  121  GFLNILEGCRNSKVSHLIYASSSSVYGLNGNVPFSEKDSIAHPVSLYAASKKADELMAHA  180
            GF+NILE  R+ ++ +LIYASSSSVYG N + PFS  D+I HP+SLYAA+KK++ELMAH+
Sbjct  105  GFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHT  164

Query  181  YSHLYNIPTTGLRFFTVYGPWGRPDMSPFLFADAILHHRAIKVFNNGNMFRDFTYIDDII  240
            YSHLYN+PTTGLRFFTVYGPWGRPDM+ F F+ AI++++AI V+N+GNM RDFTY+DDI+
Sbjct  165  YSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIV  224

Query  241  EGIIRVMQHVPIGNKNWKPENPSPDSSSAPYKIYNIGNSRPVKLMDFIQAIENAIGREAE  300
            E+I R+++  +  NK+W   +P P+SS APYK+YNIGN+ PV+LM+F++AIEN +G+EA 
Sbjct  225  EAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEAR  284

Query  301  KIYLPMQPGDVYQTYADITSLEHDTGFKPDTSLLEGVRKTIDWYCDFYK  349
            K Y+ +QPGDV +TYA++  L +D +FKP+T++ +GV K +DWY ++YK
Sbjct  285  KNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

274) ETAE_1203 in NC_013508


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  336 bits (1261),  Expect = 9e-94, Method: Compositional matrix adjust.
 Identities = 183/334 (55%), Positives = 265/334 (80%), Gaps = 1/334 (0%)

Query  1    MRVLVTGCAGFIGANLCGRLLAAGHQVEGIDNLNDYYDVSLKQARLAPLQADANFTYHPi  60
            M++L+TG AGFIG++L  +L+  GH V G+D++NDYY VSLK+ RL ++ +  NFT++ +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  61   diadsaamaalfsaaHFDRVVHLAAQAGVRYSLTNPLSYAQSNLLGHVNVLEGCRHGKVG  120
             + +   ++ +F   + + VV+LAAQAGVRYS+ NP +Y +SN++G +N+LE  RH ++ 
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGLNNKVPFSTADRVDHPISLYAATKKSNELMAHSYSHLYGLPTTGLRFF  180
            +L+YASSSSVYG N   PFST+D +DHP+SLYAATKKSNELMAH+YSHLY LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTKNMLEGKPIDIYNHGDMQRDFTYIDDIVEGVLRIMEVVPQPNA  240
            TVYGPWGRPDMALFKFTK ++++++ID+YNHG+M RDFTY+DDIVE++ R++   + PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWRVEQGAPAASSAPYRIYNIGHGSPVRLMDYITALEEALGIEALKHFMPMQPGDVYQTY  300
            +W   +  P++S APY++YNIG+ SPVRLM+++ A+E+ LG EA K++M +QPGDV +TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTEDLFAVTGYRPQMGVKAGVQAFVNWYRDYYN  334
            A+ +DLF   +++P+  ++ GV+ FV+WY +YY+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

275) ETAF_1121 in NC_017309


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  336 bits (1261),  Expect = 9e-94, Method: Compositional matrix adjust.
 Identities = 183/334 (55%), Positives = 265/334 (80%), Gaps = 1/334 (0%)

Query  1    MRVLVTGCAGFIGANLCGRLLAAGHQVEGIDNLNDYYDVSLKQARLAPLQADANFTYHPi  60
            M++L+TG AGFIG++L  +L+  GH V G+D++NDYY VSLK+ RL ++ +  NFT++ +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  61   diadsaamaalfsaaHFDRVVHLAAQAGVRYSLTNPLSYAQSNLLGHVNVLEGCRHGKVG  120
             + +   ++ +F   + + VV+LAAQAGVRYS+ NP +Y +SN++G +N+LE  RH ++ 
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGLNNKVPFSTADRVDHPISLYAATKKSNELMAHSYSHLYGLPTTGLRFF  180
            +L+YASSSSVYG N   PFST+D +DHP+SLYAATKKSNELMAH+YSHLY LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTKNMLEGKPIDIYNHGDMQRDFTYIDDIVEGVLRIMEVVPQPNA  240
            TVYGPWGRPDMALFKFTK ++++++ID+YNHG+M RDFTY+DDIVE++ R++   + PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWRVEQGAPAASSAPYRIYNIGHGSPVRLMDYITALEEALGIEALKHFMPMQPGDVYQTY  300
            +W   +  P++S APY++YNIG+ SPVRLM+++ A+E+ LG EA K++M +QPGDV +TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTEDLFAVTGYRPQMGVKAGVQAFVNWYRDYYN  334
            A+ +DLF   +++P+  ++ GV+ FV+WY +YY+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

276) RPB_1554 in NC_007778


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  335 bits (1259),  Expect = 1e-93, Method: Compositional matrix adjust.
 Identities = 192/332 (58%), Positives = 260/332 (79%), Gaps = 1/332 (0%)

Query  6    VLVTGAAGFIGFHVTQQLLAKGSKVVGLDVLNDYYDPALKRARLDILQRNPDFTFVKLDL  65
            +L+TG+AGFIG H++++L+ +G  V+G+D +NDYY  +LK  RL  + ++ +FTF K+ L
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKVKL  61

Query  66   ADRGAIKALFAEYRFAVVIHLAAQAGVRYSIENPYAYIDSNLEGFINVLEGCRHNGCRHL  125
             + + +  +F + +  VV++LAAQAGVRYSIENP +YIDSN+ GF+N+LE  RH   ++L
Sbjct  62   ENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNL  121

Query  126  LYASSSSVYGANTKLPFAVQDNVDHPISLYAATKKANELMAHAYSHLYRIPTTGLRFFTV  185
            +YASSSSVYGANT  PF+  DN+DHP+SLYAATKK+NELMAH+YSHLY +PTTGLRFFTV
Sbjct  122  IYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTV  181

Query  186  YGPWGRPDMAMFIFAKAITEGAPIKLFNRGMMRRDFTYVDDVSEAIVRLVDKPPQGNAAW  245
            YGPWGRPDMA+F F+KAI ++ +I ++N+G M RDFTYVDD+ EAI RLV KP+  N  W
Sbjct  182  YGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEW  241

Query  246  SGDHPDPASSTAPWKIYNIGNNNPEELLHVVSLLEKEFGRPAQKEMLPMQPGDVPATYAD  305
            SG +PDP+SS AP K+YNIGNN+P  L++ V  +E+ +G+ A+K+ + +QPGDVP TYA+
Sbjct  242  SGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYAN  301

Query  306  VEDLMRDIGFRPSTTIERGVAAFAAWYRAYHK  337
            V+DL RDI+F+P TTI+ GV  F  WY  Y K
Sbjct  302  VDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

277) BcerKBAB4_5065 in NC_010184


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  335 bits (1256),  Expect = 2e-93, Method: Compositional matrix adjust.
 Identities = 202/327 (62%), Positives = 266/327 (82%), Gaps = 14/327 (4%)

Query  13   LITGAAGFIGMHLSKKLLEMGCKVIGYDNLNDYYDISLKESRLNILNQYNNFTFHKADLT  72
            LITG+AGFIG HL+KKL+  G  VIG D++NDYY +SLKE RL+ + + +NFTF+K  L 
Sbjct  4    LITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKVKLE  62

Query  73   DKEYLEKLFNENNIHIVVNLAAQAGVRYSIENPDAYIQSNVVGFLNILEMCRHHKVEHLL  132
            + + L K+F +++ ++VVNLAAQAGVRYSIENP +YI+SN+VGF+NILE  RH ++++L+
Sbjct  63   NYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNLI  122

Query  133  YASSSSVYGANKKIPFSTEDKVDNPVSLYAATKKSNELMAHTYSHLYNVPTTGLRFFTVY  192
            YASSSSVYGAN   PFST D++D+P+SLYAATKKSNELMAHTYSHLYN+PTTGLRFFTVY
Sbjct  123  YASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTVY  182

Query  193  GPYGRPDMAYFSFTKAITEGKPIKVFNEGDMYRDFTYIDDIVDGIIKLLENSPVLNNKEL  252
            GP GRPDMA F FTKAI ++++I V+N+G+M RDFTY+DDIV++I +L+ + P   NKE 
Sbjct  183  GPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLV-KKPASPNKEW  241

Query  253  ------------PYKVYNIGNNKPVKLLDFIQAIESAVGKEAVKEYYPMQPGDVYQTYAD  300
                        PYKVYNIGNN PV+L++F++AIE+ +GKEA K+Y  +QPGDV +TYA+
Sbjct  242  SGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYAN  301

Query  301  VSDLINDVGFKPDTPIQEGINKFVDWF  327
            V DL+ D++FKP+T IQ+G+NKFVDW+
Sbjct  302  VDDLFRDIDFKPETTIQDGVNKFVDWY  328

278) RGE_03970 in NC_017075


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  335 bits (1258),  Expect = 2e-93, Method: Compositional matrix adjust.
 Identities = 198/334 (60%), Positives = 261/334 (79%), Gaps = 1/334 (0%)

Query  1    MKILLTGAAGFIGMTTALRLLARGDEVVGLDNLNDYYDVRLKLDRLARLEPLPGFRFVKL  60
            MKIL+TG+AGFIG   A +L+ +G+ V+G+D++NDYY V LK DRL  +     F F K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DVADRAGMEALFAAERFDRVIHLAAQAGVRYSLQNPHAYIDSNVVGFMNILEGCRHTQVQ  120
             + +  ++  +F  E+ + V++LAAQAGVRYS++NP++YIDSN+VGFMNILE  RH ++Q
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  QLVYASSSSVYGGNTKMPFSEHDSVDHPVSLYAATKKANELMAHTYSHLYGLPTTGLRFF  180
            +L+YASSSSVYG+NT  PFS  D++DHP+SLYAATKK+NELMAHTYSHLY LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFLFTKAILEGRAIDVFNHGRMKRDFTYVDDIVEGVIRVLDRTaepdp  240
            TVYGPWGRPDMALF FTKAI++++AIDV+NHG M RDFTYVDDIVE++ R++ + A P+ 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  ayvadapdpGTSNVPYRVFNIGNHQPVELMEFIGHIEAALGRQAQKNLLPLQDGDVPATY  300
               +  PDPG+S  PY+V+NIGN+ PV LMEF+  IE  LG++A+KN + LQ GDVP TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADVDALSAWTGFVPATDLRTGIGRFVDWYRGYYR  334
            A+VD L    +F P T ++ G+ +FVDWY  YY+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

279) N646_2427 in NC_022349


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  335 bits (1257),  Expect = 2e-93, Method: Compositional matrix adjust.
 Identities = 188/334 (57%), Positives = 258/334 (78%), Gaps = 0/334 (0%)

Query  1    MKYLVTGAAGFIGSATVEKLNAAGNEVVGIDNLNDYYDVNLKLARLSRIEHPMFKFLNVD  60
            MK L+TG+AGFIGS    KL   G+ V+G+D++NDYY V+LK  RL  I    F F +V 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  61   IADRSVMETLFSTEKFDRVIHLAAQAGVRYSLENPHAYADSNLVGHLNILEGCRQNDVKH  120
            + +   +  +F  E+ + V++LAAQAGVRYS+ENP++Y DSN+VG +NILE  R+ ++++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  121  LVYASSSSVYGLNAKVPFATSDSVDHPVSLYAATKKSNELMAHSYSHLYDIPTTGLRFFT  180
            L+YASSSSVYG N+  PF+TSD++DHP+SLYAATKKSNELMAH+YSHLY++PTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  181  VYGSWGRPDMAPFIFTKKILDGETIDINNNGDMWRDFTHVDDIVEGVVRISDVLPARNDS  240
            VYG+WGRPDMA F FTK I+++++ID+ N+G+M RDFT VDDIVE++ R+    ++ N  
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  241  WTVEDGTPASSSAPYAVYNIGHGSPINLMDFVKAIEDELGIEAKKNFREMQPGDVYQTYA  300
            W+  D  P+SS APY VYNIG+ SP+ LM+FV AIE+ LG EA+KN+ ++QPGDV +TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  301  DTEDLFSATGYKPKVTVKEGVAEFVSWYKEFYNK  334
            + +DLF   ++KP  T+++GV  FV WY E+Y+K
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

280) Cyan10605_1135 in NC_019776


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  334 bits (1254),  Expect = 3e-93, Method: Compositional matrix adjust.
 Identities = 188/333 (57%), Positives = 267/333 (81%), Gaps = 8/333 (2%)

Query  4    ILITGSSGFIGFHLSQRLLNDGYSVIGIDNMNDYYDVSLKQARLEILKQHHNFQFFLLDL  63
            ILITG++GFIG HL+++L+++G  VIG+D++NDYY VSLK+ RL  + ++ NF F  + L
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKVKL  61

Query  64   VDRISIMNLFKENKITTVVNLAAQAGVRYSLENPHAYVDSNLIGFVNILEACRHHNIQHL  123
             +   + ++F +++   VVNLAAQAGVRYS+ENP++Y+DSN++GF+NILE  RH NIQ+L
Sbjct  62   ENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNL  121

Query  124  VYASSSSVYGANKKIPFSTQDNVDNPVSLYAATKKANELMAHTYSHLYNIPTTGLRFFTV  183
            +YASSSSVYGAN   PFST DN+D+P+SLYAATKK+NELMAHTYSHLYN+PTTGLRFFTV
Sbjct  122  IYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTV  181

Query  184  YGTYGRPDMAYFIFTKNILEGKKIKVFNYGDMQRDFTYIDDIIEGVVRVMKQIPTPQTDN  243
            YG  GRPDMA F FTK I++++ I V+N G+M RDFTY+DDI+E++ R++K+ ++P+ + 
Sbjct  182  YGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEW  241

Query  244  PNSK-------APYRLYNIGNNKPVKLIDFITTIEKSLGVTAEKEFLPIQPGDVPITYAD  296
            + +        APY++YNIGNN PV+L++F+ +IE+ LG  A K+++ +QPGDVP TYA+
Sbjct  242  SGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYAN  301

Query  297  VDDLYKSVGFKPSTPIEKGIDEFVKWYREFYQN  329
            VDDL++ ++FKP T I+ G++ FV WY E+Y++
Sbjct  302  VDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

281) lpsL in NC_015844


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  334 bits (1255),  Expect = 3e-93, Method: Compositional matrix adjust.
 Identities = 200/352 (57%), Positives = 269/352 (77%), Gaps = 32/352 (9%)

Query  1    MKILVTGAAGFIGYHLCEKLLHQGFEVVGLDNINDYYDVNLKYDRLKQLGIERSDAQTFR  60
            MKIL+TG+AGFIG HL  KL+ QG  V+G+D+INDYY V+LK DRLK +G          
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG----------  50

Query  61   KKCYGSIYGDKFSFVRMNLEDRDALPKLFKEEKVDRVCNLAAQAGVRYSIENPETYIDSN  120
                     ++F+F +++LE+ D L+K+F +E+ + V NLAAQAGVRYSIENP TYIDSN
Sbjct  51   --------KENFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSN  102

Query  121  IVGYLNLLECCRHNKVEHLVYASSSSVYGLNEKIPFSTSDSVDHPISLYAASKKSNELMA  180
            IVG++N+LEC RH ++++L+YASSSSVYG N   PFSTSD++DHP+SLYAA+KKSNELMA
Sbjct  103  IVGFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMA  162

Query  181  HTYSHLFGFATTGLRFFTVYGPWGRPDMALFLFTDAIAKGNPIQVFNHGKMERDFTYVDD  240
            HTYSHL+ ++TTGLRFFTVYGPWGRPDMALF FT AI ++++I+V+NHG+M RDFTYVDD
Sbjct  163  HTYSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDD  222

Query  241  IVEGIVRVLTKTVRNR--------------DLYEIYNIGNNNAVKLTDFIEAIESSMGQK  286
            IVE+I R++ K                     Y +YNIGNN++V+L +F+EAIE+ +G+ 
Sbjct  223  IVEAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKE  282

Query  287  ATKELMPMQPGDVERTWADVNDLIRDYDYQPNTSVVEGVQKFIEWYKNYYKK  338
            A K+ M +QPGDV  T A+V+DL+RD D++P+T++ +GV+KF++WY +YYKK
Sbjct  283  ARKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

282) PCC8801_3879 in NC_011726


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  334 bits (1252),  Expect = 4e-93, Method: Compositional matrix adjust.
 Identities = 194/333 (59%), Positives = 264/333 (80%), Gaps = 10/333 (3%)

Query  3    NILITGAAGFIGFHLSQKLLHQGATIIGIDNLNSYYDVSLKKARLQQIETDKNFRFYQLD  62
            +ILITG+AGFIG HL++KL+ QG  +IG+D++N YY VSLK  RL+ I  + NF F ++ 
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKVK  60

Query  63   IANRKTISELFTQHTFDYVIHLAAQAGVRYSLENPHAYVDSNLVGFVNILEGCRHGRIKH  122
            + N   +S +F ++  + V++LAAQAGVRYS+ENP++Y+DSN+VGF+NILE  RH  I++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  123  LVYASSSSVYGANKKIPFSTEDNVDHPISLYAATKKANELMAYTYSHLYRLPTTGLRFFT  182
            L+YASSSSVYGAN   PFST DN+DHP+SLYAATKK+NELMA TYSHLY LPTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  183  VYGPWGRPDMAYFMFTKAILAGEPIKVFNNGKMKRDFTYIDDIVEGIIRVMNRIPNP---  239
            VYGPWGRPDMA F FTKAI+ +++I V+N+G+M RDFTY+DDIVE+I R++++ ++P   
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  240  ---LESELG---VPYKVYNIGNNQPVELLKFIEILETCLGKKAIKNFLPMQPGDVPMTYA  293
                +++ G    PYKVYNIGNN PV L+ F+E +E  LGK A KN++ +QPGDVP TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  294  DIDDLMKDVGFRPDTPLEIGLEQFVCWYQTYYQ  326
            ++DDL +D++F+P+T ++ G+++FV WY  YY+
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

283) Halhy_3407 in NC_015510


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  334 bits (1253),  Expect = 4e-93, Method: Compositional matrix adjust.
 Identities = 201/347 (58%), Positives = 276/347 (80%), Gaps = 15/347 (4%)

Query  3    RILVTGAAGFIGFHLAKQLIERGDLVVGLDSLNDYYEIDLKHARLAQLGIDRSSILPGEL  62
            +IL+TG+AGFIG HLAK+LI +G+ V+G+DS+NDYY + LK+ RL  +G           
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG-----------  50

Query  63   ISGAQANFSFVQMNIDDLSGLEKLFQDQGFDVVINLAAQAGVRYSLINPHAYINSNIVGF  122
                + NF+F ++++++  +L K+F D+  +VV+NLAAQAGVRYS+ NP++YI+SNIVGF
Sbjct  51   ----KENFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGF  106

Query  123  VNILECCRHHKIKHLVYASSSSVYGLNTEMPFSTSHNVDHPVSLYAASKKSNELMAHTYS  182
            +NILEC RH +I++L+YASSSSVYG NT  PFSTS+N+DHP+SLYAA+KKSNELMAHTYS
Sbjct  107  MNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYS  166

Query  183  HLYGLPTTGLRLFTVYGPWGRPDMAPFLFTKAILAGEPIKVFNEGKMIRDFTYVGDIVAG  242
            HLY LPTTGLR+FTVYGPWGRPDMA F FTKAI+ +++I V+N+G+M+RDFTYV+DIV +
Sbjct  167  HLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEA  226

Query  243  IVLVADRIpapnpnwnpaladpaRSSAAYRIYNIGNNLPVSLAEFIAATEKALGKVAIKQ  302
            I  +  + ++PN +W+ A +DP+ S A+Y++YNIGNN PV L EF+ A E+ LGK A K+
Sbjct  227  ISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKN  286

Query  303  MMPMQPGDVVATFADVSDLEADTGYKPGTSIQEGMQRFVDWYRDYYQ  349
             M +QPGDV  T+A+V DL  D ++KP T+IQ+G+++FVDWY +YY+
Sbjct  287  YMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

284) Oscil6304_3549 in NC_019693


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  334 bits (1253),  Expect = 4e-93, Method: Compositional matrix adjust.
 Identities = 180/332 (55%), Positives = 260/332 (79%), Gaps = 1/332 (0%)

Query  4    ILVTGAAGFIGFHLCQRLLGRGEAILGIDNLNDYYDVNLKRSRLALLQAHPQFEFCQLDL  63
            IL+TG+AGFIG HL ++L+ +G+ ++G+D++NDYY V+LK  RL  + +  +F F ++ L
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKVKL  61

Query  64   SDRQGMEKLFADYQPDRVINLAAQAGVRYSLTHPHAYVESNLIGFTNILEGCRHNHVKHL  123
             + +++ K+F D QP+ V+NLAAQAGVRYS+ +P++Y++SN++GF NILE  RH ++++L
Sbjct  62   ENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNL  121

Query  124  VFASSSSVYGANTKMPFSVRDNVDAPISLYAATKKANELMAHTYSYLYGLPTTGLRFFTV  183
            ++ASSSSVYGANT  PFS  DN+D P+SLYAATKK+NELMAHTYS LY LPTTGLRFFTV
Sbjct  122  IYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTV  181

Query  184  YGPWGRPDMALFLFTEAILAGKPIPVFNYGKMKRDFTYVDDIITGVVRVLDRIPKNNPES  243
            YGPWGRPDMALF FT AI+ +++I V+N G+M RDFTYVDDI+ ++ R++ + +  N E 
Sbjct  182  YGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEW  241

Query  244  TETHSPNPSLTVPYKVYNIGNNQPVELLRFIEILEDCLGKKAEKEFLPMQPGDVPATYAD  303
            + +++   S   PYKVYNIGNN PV L+ F+E +E+ LGK A K+++ +QPGDVP TYA+
Sbjct  242  SGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYAN  301

Query  304  IEELEQDVGFRPSIPLEVGIPRFVSWYQSYYR  335
            +++L +D++F+P   ++ G+ +FV WY  YY+
Sbjct  302  VDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

285) Dd1591_2850 in NC_012912


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  333 bits (1248),  Expect = 1e-92, Method: Compositional matrix adjust.
 Identities = 186/334 (56%), Positives = 260/334 (78%), Gaps = 1/334 (0%)

Query  1    MKFLVTGAAGFIGFYTCQSLCAAGHTVVGIDNLNSYYEVSlkearlaklralSGFRFERI  60
            MK+L+TG+AGFIG    + L   GH V+G+D++N YY VSLKE RL  +     F F+++
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DIADSQAMTALFAAEKFERVIHLAAQAGVRYSLENPMVYAQSNLIGHLNVLEGCRHHGVG  120
             + + + ++ +F  E+ E V++LAAQAGVRYS+ENP  Y +SN++G +N+LE  RH  + 
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLIYASSSSVYGLNGKTPFATTDAADHPISLYAATKKSNELMAHSYSHLYDLPTTGLRFF  180
            +LIYASSSSVYG N   PF+T+D  DHP+SLYAATKKSNELMAH+YSHLY+LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTRRILAGEPIDIYNQGDMWRDFTYVTDIVEGVLRVVDQIPTRNA  240
            TVYGPWGRPDMALFKFT+ I+ +++ID+YN+G+M RDFTYV DIVE++ R+V + ++ N 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWTVEGGSPATSSAPYRLYNIGNGSPVRLMDFVTALESALGREAVKNFMPMQAGDVYQTY  300
            +W+  +  P++S APY++YNIGN SPVRLM+FV A+E+ LG+EA KN+M +Q+GDV +TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTSDLFAVTGYRPQVGVNEGVRAFVDWYRDFYQ  334
            A+  DLF   +++P+  +++GV  FVDWY ++Y+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

286) Sta7437_1561 in NC_019748


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  333 bits (1251),  Expect = 5e-93, Method: Compositional matrix adjust.
 Identities = 189/333 (57%), Positives = 270/333 (82%), Gaps = 12/333 (3%)

Query  1    MTVLITGVAGFIGYHLAQRFLAEGKQVYGIDNLNDYYDVALKQARLNQLLSQPGFTFQYL  60
            M +LITG AGFIG HLA++++ +G  V G+D++NDYY V+LK+ RL+ + ++  FTF+ +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  61   DISGRSLIAQLFQQHHFECVVHLAAQAGVRYSLENPHTYVDSNLVGFTNILEGCRQSQIQ  120
             +     ++++F +++ E VV+LAAQAGVRYS+ENP+TY+DSN+VGF NILE  R+ +IQ
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVFASSSSVYGANTKVPFSVSDNVDRPISLYAATKKANELMAHAYSHLYQIPITGLRFF  180
            +L++ASSSSVYGANT  PFS SDN+D+P+SLYAATKK+NELMAH+YSHLY++P TGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGAWGRPDMAYFKFVKAIAENRSIDVYNFGKMKRDFTYIDDVIEAMVRVIAKI-----  235
            TVYG+WGRPDMA FKF KAI ++++IDVYN G+M RDFTY+DD++EA+ R++ K      
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  236  ------PQASETQPPYKIYNLGNHSPVELSEFIETIEQIMGKSAKKNFLPMQPGDVFSTY  289
                  P+++ + +PYK+YN+GN+SPV L EF+E+IE+ +GK A+KN++ +QPGDV  TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  290  ADVDELIKDVNFKPTTSITQGMEHFIDWYREYY  322
            A+VD+L++D++FKP T+I +G++ F+DWY EYY
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

287) Mrad2831_0674 in NC_010505


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  333 bits (1251),  Expect = 6e-93, Method: Compositional matrix adjust.
 Identities = 189/330 (58%), Positives = 257/330 (78%), Gaps = 1/330 (0%)

Query  6    VLITGVAGFIGNQLALRLLEAGRPVVGLDSVNAYYDVRLKEARLQRLAGFPGYSfarldl  65
            +LITG AGFIG++LA +L+  G+ V+G+DS+N YY V LKE RL+ ++    ++F ++ L
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKVKL  61

Query  66   adrdgldalfrrHAFRTVIHLAAQAGVRYSLTDPHAYAASNLVGFLNILEACRHGGVGHL  125
             + D+L  +F  +    V++LAAQAGVRYS+ +P++Y  SN+VGF+NILE  RH  + +L
Sbjct  62   ENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNL  121

Query  126  LYASSSSVYGGVTAMPFSVHQNVDHPLSLYAATKKANELMAHSYSHLYGLPTTGLRFFTV  185
            +YASSSSVYG+ T+ PFS  +N+DHPLSLYAATKK+NELMAH+YSHLY LPTTGLRFFTV
Sbjct  122  IYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTV  181

Query  186  YGPWGRPDMALYLFTRAILAGEPIRVFNEGRMLRDFTYIDDIVAGIQALAERPAAPDPGW  245
            YGPWGRPDMAL+ FT+AI+ +++I V+N+G M+RDFTY+DDIV +I  L  +PA+P+  W
Sbjct  182  YGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEW  241

Query  246  SGAVPDPGTSSAPYRIYNIGNNEPVALLEMITLLEDALGRKAEKILLPMQPGDVPATYAD  305
            SGA PDPG+S APY++YNIGNN PV L+E +  +E+ LG+ A K  + +QPGDVP TYA+
Sbjct  242  SGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYAN  301

Query  306  IDDLVRDAGFRPATPLKTGIGHFVDWYRTY  335
            +DDL RD +F+P T ++ G+  FVDWY  Y
Sbjct  302  VDDLFRDIDFKPETTIQDGVNKFVDWYLEY  331

288) uge in NC_014532


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  333 bits (1250),  Expect = 6e-93, Method: Compositional matrix adjust.
 Identities = 180/333 (55%), Positives = 262/333 (79%), Gaps = 3/333 (0%)

Query  1    MKLLITGMAGFIGHAVAKRLAGQEYDILGVDNLSDYYDVSLKQARLDDLADAPNIRFERL  60
            MK+LITG AGFIG  +AK+L  Q   ++GVD+++DYY VSLK+ RL  ++   N+ F+++
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKV  59

Query  61   DLADREAVAALFEAEGFDRVIHLAAQPGVRYSLENPHAYADANLLGHLNVLEGCRHGRVE  120
             L + + ++ +F  E  + V++LAAQ+GVRYS+ENP++Y D+N++G +N+LE  RH  ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGANDKTPFATSDNVDHPISLYAATKKANELMAHTYSHLYDLPTTGLRFF  180
            +L+YASSSSVYGAN   PF+TSDN+DHP+SLYAATKK+NELMAHTYSHLY+LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMAMFKFTRAVLAGEPLQVYNHGEMFRDFTYIDDIVEGIVRILD--VVPKR  238
            TVYGPWGRPDMA+FKFT+A++ +++++VYNHG+M RDFTY+DDIVE+I R++     P++
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  239  DEKTVPASPDTSDAPYRLYNIGHGSPVALMDFVRAVESATGREAICDFQPMQPGDVPRTW  298
            +     + P++S APY++YNIG+ SPV LM+FV A+E+  G+EA  ++  +QPGDVP T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  299  ADTEALFAATGHRPQIGVEEGVARFVEWYRDYY  331
            A+ + LF   + +P+  +++GV +FV+WY +YY
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

289) PSEBR_a3748 in NC_015379


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  333 bits (1251),  Expect = 6e-93, Method: Compositional matrix adjust.
 Identities = 171/336 (51%), Positives = 260/336 (78%), Gaps = 2/336 (0%)

Query  1    MNILVTGAAGFIGAHVVLRLLRDGHRVCGLDNFNDYYDPQLKHDRVTWVNDQAGEFPLAR  60
            M+IL+TG+AGFIG+H+  +L+++GH V G+D++NDYY   LK+DR+  +  +  +F + +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE--NFTFNK  58

Query  61   IDLVDAPAIDELFQTRRPDVVIHLAAQAGVRYSLENPQAYVDSNITGFLNILENCRRYPV  120
            + L +   +  +F   +P+VV++LAAQAGVRYS+ENP++Y+DSNI GF+NILE  R++ +
Sbjct  59   VKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNI  118

Query  121  KHLIYASSSSVYGANPRTPYSVQDNVDHPLSLYAASKKANELMAHSYSHLFGIPCTGLRF  180
            ++LIYASSSSVYGAN   P+S  DN+DHPLSLYAA+KK+NELMAH+YSHL+ +P TGLRF
Sbjct  119  QNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRF  178

Query  181  FTVYGPWGRPDMSPIQFARAIVEDRVLQLFNHGEHQRDFTYIDDIVESIARLIDRAPQVT  240
            FTVYGPWGRPDM+ ++F++AIV+D+ ++++NHG+  RDFTY+DDIVE+I+RL+ +++   
Sbjct  179  FTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPN  238

Query  241  PLLDHEQPDPATSRAPWRIYNIGGQHPVALRSYVALLEKHLGQTARIELLPLQAGDVLNT  300
                  +PDP++S AP ++YNIG + PV L  +V  +E+ LG+ AR + + LQ+GDV +T
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPET  298

Query  301  CADASDLARATGFKPRIELDEGLGRFIQWFLDYYAR  336
             A+  DL R  +FKP   +++G+ +F++W+L+YY +
Sbjct  299  YANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

290) wcaG in NC_009840


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  333 bits (1249),  Expect = 8e-93, Method: Compositional matrix adjust.
 Identities = 194/338 (58%), Positives = 265/338 (79%), Gaps = 6/338 (1%)

Query  1    MKILITGCAGFIGYHLSKRLIQEKYHVVGIDNLNNYYDPNLKKARLEELNKLAKEKNQEF  60
            MKILITG AGFIG HL+K+LI++   V+G+D++N+YY  +LK  RL  + K      ++F
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK------ENF  54

Query  61   NFDSFGIENSNLLEDFFKKYKPSRVINLAAQAGVRYSIENPSAYIQSNIVGFCNILELCR  120
             F+   +EN + L   F   +P  V+NLAAQAGVRYSIENP +YI+SNIVGF NILE  R
Sbjct  55   TFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSR  114

Query  121  HTEVKHLVYASSSSVYGGNTKMPFSEEQSVAHPVSLYAASKKSNELMAHTYSHLYNLPAT  180
            H ++++L+YASSSSVYG+NT  PFS  +++ HP+SLYAA+KKSNELMAHTYSHLYNLP+T
Sbjct  115  HFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTT  174

Query  181  GLRFFTVYGPWGRPDMALFLFTNAILSGKKIQVFNQGNMIRDFTYIDDIVESLFRLIFKE  240
            GLRFFTVYGPWGRPDMALF FT+AI++++ I+V+N+GNM+RDFTY+DDIVE++ RL+ K 
Sbjct  175  GLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKP  234

Query  241  AKPDENFDTSKPSLSTSWAPHRIFNIGNSKPVQLMEYINALENSLGVSAIKEFLPMQPGD  300
            A P+ +   + P  ++S AP +++NIGN+ PV+LME+++A+EN LG  A K+++ +QPGD
Sbjct  235  ASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGD  294

Query  301  VPATSADTSALEDWIGFKPNTAITDGINRFVDWYRNFY  338
            VP T A+   L   I+FKP+T+I DG+N+FVDWY ++Y
Sbjct  295  VPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

291) PputUW4_01986 in NC_019670


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  333 bits (1248),  Expect = 9e-93, Method: Compositional matrix adjust.
 Identities = 171/335 (52%), Positives = 256/335 (77%), Gaps = 2/335 (0%)

Query  1    MKILVTGAAGFIGAHCVLRLLRDGHQVFGLDNFNSYYDPQLKRDRVRWVQEQARPFPLST  60
            MKIL+TG+AGFIG+H   +L+++GH V+G+D++N YY   LK DR++ +  +   F ++ 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKEN--FTFNK  58

Query  61   IDLADATAIETLFAEEQPEVVIHLAAQAGVRYSLENPRAYLDSNLSGFLNILESCRNHPV  120
            + L +   +  +F +EQPEVV++LAAQAGVRYS+ENPR+Y+DSN+ GF+NILE  R+  +
Sbjct  59   VKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNI  118

Query  121  KHLVYASSSSVYGANQHTPYSVRDGVDHPLSLYAATKKSNELMAHSYSHLFGIPCTGLRF  180
            ++L+YASSSSVYGAN   P+S  D +DHPLSLYAATKKSNELMAH+YSHL+ +P TGLRF
Sbjct  119  QNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRF  178

Query  181  FTVYGPWGRPDMSPIQFARAIAEERPLKLFNYGEHQRDFTYIDDIIESITRLIECPPQAN  240
            FTVYGPWGRPDM+ ++F++AI +++++ ++N G+  RDFTY+DDI+E+I+RL+  P+ +N
Sbjct  179  FTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPN  238

Query  241  DQWDREHPDPATSMAPWRIFNIGGQHPVALKDYLALLEKHMGHKARVELLPLQPGDVLNT  300
             +W   +PDP++S AP +++NIG + PV L +++  +E+ +G  AR + + LQPGDV +T
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPET  298

Query  301  CADASDLARATDFQPRIQLDEGLWRFVAWFRAYYQ  335
             A+  DL R  DF+P   +++G+ +FV W+  YY+
Sbjct  299  YANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

292) VEJY3_10525 in NC_016613


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  332 bits (1246),  Expect = 1e-92, Method: Compositional matrix adjust.
 Identities = 184/334 (56%), Positives = 259/334 (78%), Gaps = 0/334 (0%)

Query  1    MKYLVTGAAGFIGSATVKKLNAQGHEVVGIDNINDYYDVELKHARLSFIKNPSFRFLQID  60
            MK L+TG+AGFIGS   KKL  QGH V+G+D+INDYY V LK+ RL  I + +F F ++ 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  61   ISNRAEMEALFEKENFDRVIHLAAQAGVRYSLENPHCYVESNVTGYLNILEGCRQNSVQH  120
            + N  ++  +F  E+ + V++LAAQAGVRYS+ENP+ Y++SN+ G++NILE  R+ ++Q+
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  121  LVYASSSSVYGLNSKVPFATSDSVDHPVSLYAATKKSNELMAHCYSHLYQIPTTGLRFFT  180
            L+YASSSSVYG N+  PF+TSD++DHP+SLYAATKKSNELMAH YSHLY++PTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  181  VYGSWGRPDMAPFIFTKKILDGESIDINNNGELWRDFTHIIDIVEGIVRIADVIPVQNAQ  240
            VYG+WGRPDMA F FTK I+++++ID+ N+G++ RDFT + DIVE+I R+    +  N +
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  241  WKVETGSPASSSAPFAVYNVGHGSPINLMDFIYGIENELGIEAKKNFRDMQPGDVYQTYA  300
            W      P+SS AP+ VYN+G+ SP+ LM+F+ +IEN LG EA+KN+ D+QPGDV +TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  301  DTEDLYAVTGYRPVVSIQEGIAEFVSWYREFYNK  334
            + +DL+   +++P  +IQ+G+  FV WY E+Y+K
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

293) Echvi_3804 in NC_019904


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  332 bits (1246),  Expect = 1e-92, Method: Compositional matrix adjust.
 Identities = 190/349 (55%), Positives = 265/349 (76%), Gaps = 17/349 (4%)

Query  1    MKYLVTGTAGFIGFHVALKLLERGDEVIGVDSINDYYDVNLKYGRLEASGISRHEIGTGK  60
            MK L+TGTAGFIG H+A KL+ +G+ VIGVDSINDYY V+LK +RL + G          
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK---------  51

Query  61   YVRSAVYGNYTFVKFDLADKALLFELMAANKVDVVIHLAAQAGVRYSLEHPDAYVQANIQ  120
                    N+TF K  L +   L  +   ++ +VV++LAAQAGVRYS+E+P +Y+++NI 
Sbjct  52   -------ENFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIV  104

Query  121  GFLNVLEACRQYPVKQLVYASSSSVYGANKAMPFSTEHAVDHPVSLYAATKKSNELMAHT  180
            GF+N+LE  R++ +++L+YASSSSVYGAN + PFST + +DHP+SLYAATKKSNELMAHT
Sbjct  105  GFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHT  164

Query  181  YSHLFGIPTTGLRFFTVYGPWGRPDMAMFLFADAIRKGEVIKVFNYGKMERDFTYIDDIV  240
            YSHL+ +PTTGLRFFTVYGPWGRPDMA+F F+ AI +++ I V+N G+M RDFTY+DDIV
Sbjct  165  YSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIV  224

Query  241  EGVVRVADKPRKPNPNWH-ENPTVSTSYAPYKIYNIGNSKPVKLMDYIHELEKAMGKSAQ  299
            E++ R+  KP  PN +W   +P  ++SYAPYK+YNIGN+ PV+LM++++ +E+ +GK A+
Sbjct  225  EAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEAR  284

Query  300  KEMMPMQAGDVVCTYADVQDLSADTGYRPATPLEEGVKQFVKWYAAYYK  348
            K+ M +Q+GDV  TYA+V+DL  D +++P T +++GV++FV WY  YYK
Sbjct  285  KNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

294) NIES39_O04300 in NC_016640


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  332 bits (1245),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 199/333 (60%), Positives = 266/333 (80%), Gaps = 3/333 (0%)

Query  1    MKILVTGAAGFIGFHLCQHLLKRGDTVIGIDNLNDYYAVSLKEDRIAQLKPLEKFTFYKL  60
            MKIL+TG+AGFIG HL + L+K+G+ VIG+D++NDYY+VSLKEDR+  +   E+FTF K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DLCDKVGIKKLFSEHQFEAVAHLAAQAGVRYSLKNPYAYIDSNLVGFINVLEGCRHHQIP  120
             L +  ++ K+F ++Q E V +LAAQAGVRYS+ NP +YIDSN+VGF+N+LE  RH +I 
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVFASSSSVYGSNKTVPFSVGDYVDYPVSLYAATKKANELMAHSYSHLYHIPTTGLRFF  180
            +L++ASSSSVYG+N + PFS +D +D P+SLYAATKK+NELMAH+YSHLY++PTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWYRPDMAMFIFTKAILADQPIPVFNYGNMERDFTYVDDVVEGVIRVIDKIPQPGS  240
            TVYGPW RPDMA+F FTKAI+ DQ+I V+N GNM RDFTYVDD+VE++ R++ K + P  
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  N--QAEIEGVKTTAPYQIYNIGNNKPVNLLYLIEVLENVLGKKAQKNMLPMQPGDVPITY  298
            +   A+ +   + APY++YNIGNN PV L+ ++E +EN LGK A+KN + +QPGDVP TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  299  ANVDSLIADVGFKPSTPIEVGVEKFVAWYKSYY  331
            ANVD L+ D++FKP T I+ GV+KFV WY  YY
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

295) Belba_2106 in NC_018010


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  332 bits (1245),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 209/350 (60%), Positives = 272/350 (78%), Gaps = 16/350 (4%)

Query  1    MKYFITGTAGFIGFHLTNALIERGDEVYGVDNINDYYDVNLKYARLEAAGIKRDDVAFGK  60
            MK +ITGTAGFIG HL++ LI +G+ V GVD+INDYY V+LK  RL + G  +++ +F K
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG--KENFTFNK  58

Query  61   AVKSQTLKGYTFMQLDIADKAkifeifkeekiDVVVNLAAQAGVRYSLENPDAYLQANIQ  120
                  L  Y  +   + D             +VVVNLAAQAGVRYS+ENP +Y+++NI 
Sbjct  59   V----KLENYDDLSKVFVDEQP----------EVVVNLAAQAGVRYSIENPRTYIDSNIV  104

Query  121  GFMNILEACRNYPVKHLVYASSSSVYGSNTKMPFSTSDNVDHPVSLYAATKKSNELMAHT  180
            GFMNILE  R++ +++L+YASSSSVYG+NT  PFSTSDN+DHP+SLYAATKKSNELMAHT
Sbjct  105  GFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHT  164

Query  181  YSHLFNIPTTGLRFFTVYGPWGRPDMALFLFADAMSKNEPIKVFNHGKMKRDFTYVADIV  240
            YSHL+N+PTTGLRFFTVYGPWGRPDMALF F+ A+ ++++I V+NHG+M RDFTYV DIV
Sbjct  165  YSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIV  224

Query  241  EGIIRVSDKPASPNTAWEGNQPDPGSSKAPYKVYNIGNSNPVELMDYIkalekalgkeae  300
            E+I R+  KPASPN  W G +PDPGSS APYKVYNIGN++PV LM+++ A+E+ LGKEA 
Sbjct  225  EAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEAR  284

Query  301  kemlPLQAGDVPATFADVSDLKRDTGYQPQTPVVEGVAKFVEWYKAFYQK  350
            K+ + LQ+GDVP T+A+V DL RD +++P+T + +GV KFV+WY  +Y+K
Sbjct  285  KNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

296) SELR_26490 in NC_017068


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  332 bits (1244),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 191/332 (58%), Positives = 258/332 (78%), Gaps = 12/332 (3%)

Query  12   KVLITGGAGFIGFHLSKRLLEAGAEIIGFDNCNDYYDVSLKKSRLAILRTFPRYKFIKGD  71
            K+LITG AGFIG HL+K+L+  G  +IG D+ NDYY VSLK  RL  +     + F K  
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKVK  60

Query  72   LADEDAVRTLFTDEKPDIVVNLGAQAGVRYSIDHPRSYIDSNVIGFFNILEACRHNPVEH  131
            L + D +  +F DE+P++VVNL+AQAGVRYSI++PR+YIDSN++GF NILE  RH  +++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  132  LLFASSSSVYGNQEKTPFSTTDNVDHPISLYAATKKSNELMAFTYSHLYDIPATGLRFFT  191
            L++ASSSSVYG +   PFST+DN+DHP+SLYAATKKSNELMA TYSHLY++P+TGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  192  VYGPYGRPDMAYFKFANLIRDGKAIKIYNNGDMLRDFTYVDDIVTGIEHMLCNP------  245
            VYGP GRPDMA FKF++ I +++AI +YN+G+M+RDFTYVDDIV +I +++ +P      
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  246  -----PKADGAGDRYKVYNIGNNSPVKLMDFIDTLEKALGKTAEKEYLPMQPGDVYQTYA  300
                 P ++++   YKVYNIGNNSPV+LM+F++++E+ LGK A K+Y+ +QPGDV +TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  301  DVSELERDFDFRPATTIADGLEKFAAWYRGYY  332
            +V +L RD+DF+P TTI DG++KF  WY  YY
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

297) PFLCHA0_c31100 in NC_021237


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  332 bits (1244),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 174/334 (53%), Positives = 261/334 (79%), Gaps = 2/334 (0%)

Query  1    MNILITGAAGFIGAHTALRLLKDGHQVTGLDNFNDYYDPQLKRDRVRWVERQVGHFPLQR  60
            M+ILITG+AGFIG+H A +L+K+GH V G+D++NDYY   LK DR++ + ++  +F +++
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE--NFTFNK  58

Query  61   LDLADSEGLERLFAEVRPQVVINLAAQAGVRYSLENPKAYLDSNLSGFLNLLEMCRRYPV  120
            + L + ++L ++F + +P+VV+NLAAQAGVRYS+ENP++Y+DSN+ GF+N+LE  R++ +
Sbjct  59   VKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNI  118

Query  121  QHLIYASSSSVYGANQQTPYKVSDNVDHPLSLYAASKKANELMAHSYSHLFGVPATGLRF  180
            Q+LIYASSSSVYGAN   P+  SDN+DHPLSLYAA+KK+NELMAH+YSHL+ +P+TGLRF
Sbjct  119  QNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRF  178

Query  181  FTVYGPWGRPDMSPILFADAISQGRPLKLFNYGMHQRDFTYIDDIVESLVRLLGKPPVRD  240
            FTVYGPWGRPDM+ + F+ AI +++++ ++N G   RDFTY+DDIVE++ RL+ KP+  +
Sbjct  179  FTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPN  238

Query  241  PLWDREQPDPSTSMAPWRLFNIGGQRPVELKDYVATLEKLLGHKAQVEYLPLQPGDVLNT  300
              W   +PDP++S AP +++NIG + PV L ++V ++E+ LG  A+ +Y+ LQPGDV +T
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPET  298

Query  301  CADVSALENLTGFGPQVPLEEGLREFVQWYLSYY  334
             A+V  L    +F P+  +++G+  FV+WYL YY
Sbjct  299  YANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

298) lspL in NC_004129


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  332 bits (1244),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 174/334 (53%), Positives = 261/334 (79%), Gaps = 2/334 (0%)

Query  1    MNILITGAAGFIGAHTALRLLKDGHQVTGLDNFNDYYDPQLKRDRVRWVERQVGHFPLQR  60
            M+ILITG+AGFIG+H A +L+K+GH V G+D++NDYY   LK DR++ + ++  +F +++
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE--NFTFNK  58

Query  61   LDLADSEGLERLFAEVRPQVVINLAAQAGVRYSLENPKAYLDSNLSGFLNLLEMCRRYPV  120
            + L + ++L ++F + +P+VV+NLAAQAGVRYS+ENP++Y+DSN+ GF+N+LE  R++ +
Sbjct  59   VKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNI  118

Query  121  QHLIYASSSSVYGANQQTPYKVSDNVDHPLSLYAASKKANELMAHSYSHLFGVPATGLRF  180
            Q+LIYASSSSVYGAN   P+  SDN+DHPLSLYAA+KK+NELMAH+YSHL+ +P+TGLRF
Sbjct  119  QNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRF  178

Query  181  FTVYGPWGRPDMSPILFADAISQGRPLKLFNYGMHQRDFTYIDDIVESLVRLLGKPPVRD  240
            FTVYGPWGRPDM+ + F+ AI +++++ ++N G   RDFTY+DDIVE++ RL+ KP+  +
Sbjct  179  FTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPN  238

Query  241  PLWDREQPDPSTSMAPWRLFNIGGQRPVELKDYVATLEKLLGHKAQVEYLPLQPGDVLNT  300
              W   +PDP++S AP +++NIG + PV L ++V ++E+ LG  A+ +Y+ LQPGDV +T
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPET  298

Query  301  CADVSALENLTGFGPQVPLEEGLREFVQWYLSYY  334
             A+V  L    +F P+  +++G+  FV+WYL YY
Sbjct  299  YANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

299) glr1068 in NC_005125


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  331 bits (1243),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 192/332 (58%), Positives = 249/332 (75%), Gaps = 13/332 (3%)

Query  1    MKVLITGVAGFIGYHLAARLLQEGSKVYGIDNLNSYYDVRLKEARLARLVPHPQFTFRHL  60
            MK+LITG AGFIG HLA +L+++G  V G+D++N YY V LKE RL + +   +FTF  +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRL-KSIGKENFTFNKV  59

Query  61   DIARRPAMFELFESESFDCVVHLAAQAGVRYSLKNPFAYVDSNLSGFVNLLECCRTSGIG  120
             +     +  +F  E  + VV+LAAQAGVRYS+ NP +Y+DSN+ GF+N+LEC R   I 
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGANTKAPFSVSDNVDHPVSLYAATKKANELMAHAYSHLYALPTTGLRFF  180
            +L+YASSSSVYGANT  PFS SDN+DHP+SLYAATKK+NELMAH+YSHLY LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMAYFKFVQAIEAGKPIDVYNHGHMQRDFTYIDDIVEGIVRLLPRVPTHAG  240
            TVYGPWGRPDMA FKF +AI  +++IDVYNHG+M RDFTY+DDIVE+I RL+ + ++   
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  A------------APYRIYNIGNHQPVSLIEFIEVIEQALGKRAVKNLLPMQPGDVPATC  288
                         APY++YNIGN+ PV L+EF+E IE+ LGK A KN + +QPGDVP T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  289  ADVDDLMREVGFKPSTPLTVGIERFVCWYRDY  320
            A+VDDL R+++FKP T +  G+++FV WY +Y
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEY  331

300) Ppro_3406 in NC_008609


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  331 bits (1243),  Expect = 3e-92, Method: Compositional matrix adjust.
 Identities = 193/332 (59%), Positives = 264/332 (80%), Gaps = 1/332 (0%)

Query  11   RVLVTGAAGFIGFHLSRHLLEQGYQVIGLDNLNDYYDQTLKEARLRLLEPLPGFSFLRAS  70
            ++L+TG+AGFIG HL++ L+ QG  VIG+D++NDYY  +LKE RL+ +     F+F +  
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKVK  60

Query  71   LEDARQMEELFSRERFDLVVNLAAQAGVRYSITNPHAYISSNVAGFLNVLEGCRHTGVKH  130
            LE+  ++  +F  E+ ++VVNLAAQAGVRYSI NP++YI SN+ GF+N+LE  RH  +++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  131  LVFASSSSVYGANARVPFSEHHTVDHPVSLYAATKKSNELMAHTYAHLFGLATTGLRFFT  190
            L++ASSSSVYGAN+  PFS  + +DHP+SLYAATKKSNELMAHTY+HL+ L+TTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  191  VYGPWGRPDMAYFSFTKAILEGRAIDVFNHGRMRRDFTYIDDIVQGIARVLERPPQGdaa  250
            VYGPWGRPDMA F FTKAI++++AIDV+NHG M RDFTY+DDIV++I+R++ +P+  +  
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  251  wdanapdpasssapYRIYNIGNNRPVELGRFIETLEQLLGKKAIKNMLPMQPGDVPATCA  310
            W +  PDP+SS APY++YNIGNN PV L  F+E++E+ LGK A KN + +QPGDVP T A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  311  DIDDLARDAGFRPSTPIETGLRRFVEWYREYY  342
            ++DDL RD +F+P T I+ G+ +FV+WY EYY
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

301) PSF113_1969 in NC_016830


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  331 bits (1241),  Expect = 4e-92, Method: Compositional matrix adjust.
 Identities = 172/334 (52%), Positives = 259/334 (78%), Gaps = 2/334 (0%)

Query  1    MNILVTGAAGFIGAHVVLRLLRDGHRVCGLDNFNDYYDPQLKHDRVAWVYEQAGDFPLAR  60
            M+IL+TG+AGFIG+H+  +L+++GH V G+D++NDYY   LK+DR+  +     +F + +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI--GKENFTFNK  58

Query  61   IDLVDAPAIDELFQTRRPDVVIHLAAQAGVRYSLENPQAYVDSNITGFLNILENCRRYPV  120
            + L +   +  +F   +P+VV++LAAQAGVRYS+ENP++Y+DSNI GF+NILE  R++ +
Sbjct  59   VKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNI  118

Query  121  KHLIYASSSSVYGANSRTPYSVQDNVDHPLSLYAASKKANELMAHSYSHLFGIPCTGLRF  180
            ++LIYASSSSVYGAN+  P+S  DN+DHPLSLYAA+KK+NELMAH+YSHL+ +P TGLRF
Sbjct  119  QNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRF  178

Query  181  FTVYGPWGRPDMSPIQFARAIAEDHVLQLFNHGEHQRDFTYIDDIVESIARLIERAPQVT  240
            FTVYGPWGRPDM+ ++F++AI +D+ ++++NHG+  RDFTY+DDIVE+I+RL+ +++   
Sbjct  179  FTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPN  238

Query  241  PLLDHEQPDPATSRAPWRIYNIGGQQPVSLRTYVELLEKHLGRTARIELLPLQAGDVLNT  300
                  +PDP++S AP ++YNIG + PV L  +VE +E+ LG+ AR + + LQ+GDV +T
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPET  298

Query  301  CADASDLARATGFKPCIELDDGLGRFIQWFLDYY  334
             A+  DL R  +FKP   ++DG+ +F++W+L+YY
Sbjct  299  YANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

302) Mic7113_3712 in NC_019738


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  330 bits (1240),  Expect = 4e-92, Method: Compositional matrix adjust.
 Identities = 196/333 (59%), Positives = 271/333 (82%), Gaps = 1/333 (0%)

Query  1    MKVLVTGVAGFIGYHLAKRLLAEGIEVYGIDNLNDYYDVTLKKDRLAQLQPQAKFTFEWL  60
            MK+L+TG AGFIG HLAK+L+ +G  V G+D++NDYY V+LK DRL  +  + +FTF+ +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  61   DLANRDRILELFPEQSFDYVINLAAQAGVRYSLENPFAYVDSNMSGFVNLLEGCRQTQVK  120
             L N D +  +F ++  + V+NLAAQAGVRYS+ENP +Y+DSN+ GF+N+LE  R+ +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVFASSSSVYGVNTKVPFAVTDNVDHPISLYAASKKANELIAHVYSHLYNLPATGLRFF  180
            +L++ASSSSVYG NT  PF+ +DN+DHP+SLYAA+KK+NEL+AH YSHLYNLP+TGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMAYFKFVKAIQEGKAIDIYNFGKMKRDFTYvddvvegvvrvMHKPPQSPV  240
            TVYGPWGRPDMA FKF KAI +++AID+YN G+M RDFTYVDD+VE++ R++ KP+ +  
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  NPSGNHPEVAPSSAPYKLYNIGNNNPVELMTFIEVIEQALGKTVEKNFLPLQPGDVLSTY  300
            + SG +P+ ++S APYK+YNIGNN+PV LM F+E IE+ LGK   KN++ LQPGDV  TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADVDELMKDVGFKPSTTIEEGIHRFVRWYQNYY  333
            A+VD+L +D++FKP TTI++G+++FV WY +YY
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

303) Dda3937_04708 in NC_014500


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  330 bits (1238),  Expect = 5e-92, Method: Compositional matrix adjust.
 Identities = 184/334 (56%), Positives = 262/334 (79%), Gaps = 1/334 (0%)

Query  1    MKFLVTGAAGFIGFYACQSLCAAGHTVVGIDNLNNYYEVSlkearlaklralPGFHFERI  60
            MK+L+TG+AGFIG    + L   GH V+G+D++N+YY VSLKE RL  +     F F+++
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DIADSQAMTALFAAEKFERVIHLAAQAGVRYSLENPMVYAESNLIGHLNVLEGCRHNGVG  120
             + + + ++ +F  E+ E V++LAAQAGVRYS+ENP  Y +SN++G +N+LE  RH  + 
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLIYASSSSVYGLNSKTPFATADSTDHPISLYAATKKSNELMAHSYSHLYDLPTTGLRFF  180
            +LIYASSSSVYG N+  PF+T+D+ DHP+SLYAATKKSNELMAH+YSHLY+LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTRRILAGEPIDIYNQGDMWRDFTYVTDIVEGMLRMVDQIPGRDV  240
            TVYGPWGRPDMALFKFT+ I+ +++ID+YN+G+M RDFTYV DIVE++ R+V + ++ + 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  GWTVEGGSPATSSAPYQLYNIGHGSPVRLMDFVTALESALGREAVKNFMPMQAGDVYQTY  300
             W+  +  P++S APY++YNIG+ SPVRLM+FV A+E+ LG+EA KN+M +Q+GDV +TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTSDLFAVTGYRPQVGVEKGVQAFVDWYRDFYQ  334
            A+  DLF   +++P+  ++ GV+ FVDWY ++Y+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

304) Lcho_3079 in NC_010524


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  330 bits (1239),  Expect = 5e-92, Method: Compositional matrix adjust.
 Identities = 183/334 (55%), Positives = 257/334 (77%), Gaps = 1/334 (0%)

Query  1    MKILITGAAGFIGMHTAQRLIADGHQVVGIDNLNDYYDVQLKRDRLARLAELPGFTFVQV  60
            MKILITG+AGFIG H A++LI +GH V+G+D++NDYY V LK DRL  ++    FTF +V
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DVADRDALMALFDAHAVTRVVHLAAQAGVRYSITNPHAYGEANLVGFLNMLEACRQHRIE  120
             + + D L  +F  +    VV+LAAQAGVRYSI NP++Y ++N+VGF+N+LE  R+  I+
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGGNRKMPFSEGDSVDHPVSLYAATKKANELMAHAYSHLYAIPTTGLRFF  180
            +L+YASSSSVYG+N   PFS +D++DHP+SLYAATKK+NELMAH+YSHLY +PTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMAYFSFTKAIVEGRPIQVFNNGDMLRDFTYIDDIVDGVVATLYRPATADA  240
            TVYGPWGRPDMA F FTKAIV++++I+V+N+G+M+RDFTY+DDIV+++   + +PA+++ 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  AFDPLLPHPGRAQKPFRVFNIGNQDPVALGDFIAAIEAAVGKSAIKEMLPMQPGDVQATY  300
                  P+PG +  P++V+NIGN+ PV L +F+ AIE  +GK A K+ + +QPGDV  TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADVSALAEWTGVQPKTSIRTGIDRFVAWYKAYYR  334
            A+V  L    + +P T+I+ G+++FV WY  YY+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

305) Q7S_13175 in NC_017047


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  330 bits (1238),  Expect = 6e-92, Method: Compositional matrix adjust.
 Identities = 195/334 (59%), Positives = 266/334 (80%), Gaps = 1/334 (0%)

Query  1    MKYLVTGAAGFIGFYVSQRLLAAGHSVIGIDNLNDYYDVNLKLARLAQLENKVGFEFIKL  60
            MK L+TG+AGFIG  ++++L+  GH VIG+D++NDYY V+LK  RL  +  K  F F K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  61   DLADREGMAALFAEQRFERVIHLAAQAGVRYSIENPLAYADANLIGFVNVLEGCRHNKVG  120
             L + ++++ +F +++ E V++LAAQAGVRYSIENP +Y D+N++GF+N+LE  RH ++ 
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLLYASSSSVYGLNKKQPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYKIPTTGLRFF  180
            +L+YASSSSVYG N  +PFST D++DHP+SLYAATKK+NELMAHTYSHLY++PTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTKAILAGQNIDVYNHGEMRRDFTYIDDIAEAIVRLQDVIPQSDP  240
            TVYGPWGRPDMALFKFTKAI+ +Q IDVYNHG+M RDFTY+DDI EAI RL    + ++ 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWTveggspasssapysvyNIGNSNPVKLMTYISALEKALGMVAGKNMLPMQPGDVHETS  300
            +W+  +  P+SS APY VYNIGN++PV+LM ++ A+E+ LG  A KN + +QPGDV ET 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTSPLAKAIDFKPETPVEQGVQRFVDWYRDFYQ  334
            A+   L + IDFKPET +++GV++FVDWY ++Y+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

306) Rahaq_2645 in NC_015061


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  330 bits (1238),  Expect = 6e-92, Method: Compositional matrix adjust.
 Identities = 195/334 (59%), Positives = 266/334 (80%), Gaps = 1/334 (0%)

Query  1    MKYLVTGAAGFIGFYVSQRLLAAGHSVIGIDNLNDYYDVNLKLARLAQLENKVGFEFIKL  60
            MK L+TG+AGFIG  ++++L+  GH VIG+D++NDYY V+LK  RL  +  K  F F K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  61   DLADREGMAALFAEQRFERVIHLAAQAGVRYSIENPLAYADANLIGFVNVLEGCRHNKVG  120
             L + ++++ +F +++ E V++LAAQAGVRYSIENP +Y D+N++GF+N+LE  RH ++ 
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLLYASSSSVYGLNKKQPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYKIPTTGLRFF  180
            +L+YASSSSVYG N  +PFST D++DHP+SLYAATKK+NELMAHTYSHLY++PTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTKAILAGQNIDVYNHGEMRRDFTYIDDIAEAIVRLQDVIPQSDP  240
            TVYGPWGRPDMALFKFTKAI+ +Q IDVYNHG+M RDFTY+DDI EAI RL    + ++ 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWTveggspasssapysvyNIGNSNPVKLMTYISALEKALGMVAGKNMLPMQPGDVHETS  300
            +W+  +  P+SS APY VYNIGN++PV+LM ++ A+E+ LG  A KN + +QPGDV ET 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTSPLAKAIDFKPETPVEQGVQRFVDWYRDFYQ  334
            A+   L + IDFKPET +++GV++FVDWY ++Y+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

307) PCNPT3_02605 in NC_020802


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  330 bits (1238),  Expect = 6e-92, Method: Compositional matrix adjust.
 Identities = 187/332 (57%), Positives = 257/332 (78%), Gaps = 0/332 (0%)

Query  1    MKYLVTGAAGFIASAVVERLTALGHEVIGIDNLNDYYDVRLKYARLERIKNPLFTFIKMD  60
            MK L+TG+AGFI+S +  +L   GH VIG+D++NDYY V LK  RL  I +  FTF K+ 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  61   LADRIALPELFKTQKFERVIHLGAQAGVRYSIENPFAYADSNLIGHLNILEGCRHYKIKH  120
            L +   L+ +F  ++ E V++L+AQAGVRYSIENP +Y DSN++G +NILE  RH++I++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  121  LIYASSSSVYGLNNEIPFSTEKGADHPVSFYAATKKANELMAHSYSHLYQLPTTGLRFFT  180
            LIYASSSSVYG N   PFST    DHP+S+YAATKK+NELMAH+YSHLY+LPTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  181  VYGPWGRPDMALFKFTEKIINGDEIEVYNHGDMWRDFTYIDDIVEGIIRIQDKAPTQQAD  240
            VYGPWGRPDMALFKFT  I+N++ I+VYNHG+M RDFTY+DDIVE+I R+  K+++ + +
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  241  WTPENGspasssapYAIYNIGNGEPVRLLEFIEALERALKMKAHKKFMPMQAGDVYQTFS  300
            W+  +  P+SS APY +YNIGN  PVRL+EF+EA+E  L   A+K++M +Q+GDV +T++
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  301  DSQALFDVLGYKPNTSVEKGIAEFVRWYQSFY  332
            + + LF  +++KP+T+++ G+  FV WY  +Y
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

308) wcaG-3 in NC_008319


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  330 bits (1239),  Expect = 6e-92, Method: Compositional matrix adjust.
 Identities = 182/337 (55%), Positives = 258/337 (77%), Gaps = 6/337 (1%)

Query  9    ILVTGAAGFIGAALCERLLQRGDRVIGIDNLNDYYDPALKQARLARIETLAVSTAGAWSF  68
            IL+TG+AGFIG+ L  +L+++G+ VIG+D++NDYY  +LK+ RL  I           +F
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK------ENFTF  56

Query  69   HRLALEDGDALLKLFAAEQPRVVVNLAAQAGVRYSLENPAAYIQSNLVGFGHILEGCRHH  128
            +++ LE+ D L K+F  EQP VVVNLAAQAGVRYS+ENP +YI+SN+VGF +ILE  RH 
Sbjct  57   NKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHF  116

Query  129  GVDNLVYASSSSVYGGNRNLPFHEQQAVNHPVSLYAASKKANELMAHTYSHLYGLPATGL  188
             ++NL+YASSSSVYG+N + PF   + ++HP+SLYAA+KK+NELMAHTYSHLY LP+TGL
Sbjct  117  NIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGL  176

Query  189  RFFTVYGPWGRPDMAPMLFARAILAGEPIKVFNHGKMQRDFTYIDDIVEGVLRCCDQPAT  248
            RFFTVYGPWGRPDMA   F++AI+ +++I V+NHG+M RDFTY+DDIVE++ R   +PA+
Sbjct  177  RFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPAS  236

Query  249  SNLDFDPMQPDPATAAAPHRVFNIGNSQPTELLRFIEVMEQALGREAIKDFQPMQPGDVV  308
            +N +    +PDP+++ AP +V+NIGN+ P  L+ F+E +E+ LG+EA K++  +QPGDV 
Sbjct  237  PNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVP  296

Query  309  ATAANTEALETWVGFKPSTPIEEGIQRFADWYRKFYQ  345
             T AN + L   ++FKP T I++G+++F DWY  +Y+
Sbjct  297  ETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

309) Syncc9605_0191 in NC_007516


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  330 bits (1238),  Expect = 6e-92, Method: Compositional matrix adjust.
 Identities = 180/336 (54%), Positives = 263/336 (79%), Gaps = 4/336 (1%)

Query  4    TVLVTGAAGFIGAALSKRLLQRGDRVVGLDNLNDYYDPGLKQSRLRQVEAIAPAGAWRFE  63
             +L+TG+AGFIG+ L+K+L+++G+ V+G+D++NDYY  +LK+ RL+ +          F+
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK----ENFTFN  57

Query  64   RLALEDDQGLMALFVEERPQVVVNLAAQAGVRYSLENPAAYIQSNLVGFGNLLEGCRYHG  123
            ++ LE+ ++L  +FV+E+P+VVVNLAAQAGVRYS+ENP +YI+SN+VGF N+LE  R   
Sbjct  58   KVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFN  117

Query  124  TQNLVYASSSSVYGGNRNLPFHERQPVNHPVSLYAASKKANELMAHTYSHLYGLPATGLR  183
             QNL+YASSSSVYG+N + PF   + ++HP+SLYAA+KK+NELMAHTYSHLY LP+TGLR
Sbjct  118  IQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLR  177

Query  184  FFTVYGPWGRPDMAPMLFARAILAGEPIKVFNHGKMQRDFTYIDDIVEGVLRCCDKPATS  243
            FFTVYGPWGRPDMA   F++AI+ +++I V+NHG+M RDFTY+DDIVE++ R   KPA++
Sbjct  178  FFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASP  237

Query  244  NPEFDPLQPDPATAAAPHRVFNIGNSQPTELLRFIEVMEQALGREAIKDFQPIQPGDVIA  303
            N E    +PDP+++ AP +V+NIGN+ P  L+ F+E +E+ LG+EA K++  +QPGDV  
Sbjct  238  NKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPE  297

Query  304  TAADTSALEKWINFTPSTSIEDGIQRFANWYFEYFN  339
            T A+   L + I+F P T+I+DG+++F +WY+EY++
Sbjct  298  TYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

310) tll1200 in NC_004113


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  329 bits (1234),  Expect = 1e-91, Method: Compositional matrix adjust.
 Identities = 193/337 (58%), Positives = 263/337 (79%), Gaps = 4/337 (1%)

Query  1    MDVLVTGVAGFIGHGAALALLRRGDRVIGLDNLNDYYDVNLKKSRLEHLNISSQPGQFIF  60
            M +L+TG AGFIG   A  L+++G+ VIG+D++NDYY V+LK  RL  +       +F F
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG----KENFTF  56

Query  61   RKIDLVDRLGVNQLFADFSPQKVIHLAAQAGVRYSLENPFAYIDSNIVGFLHILEACRHH  120
             K+ L +  +++++F D  P+ V++LAAQAGVRYS+ENP +YIDSNIVGF++ILE  RH 
Sbjct  57   NKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHF  116

Query  121  RVEHLVYASSSSVYGANKKLPFSVHDNVDHPLSLYAATKKANELMAHTYSHLYNIPTTGL  180
             +++L+YASSSSVYGAN   PFS  DN+DHPLSLYAATKK+NELMAHTYSHLYN+PTTGL
Sbjct  117  NIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGL  176

Query  181  RFFTVYGPWGRPDMALFKFTRAILNNEPLPVFNYGKHRRDFTYIDDIVEGILRVLDRPAA  240
            RFFTVYGPWGRPDMALFKFT+AI+N++++ V+N G+  RDFTY+DDIVE+I R++ +PA+
Sbjct  177  RFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPAS  236

Query  241  PNPAWCGETPDPATSLAPWRVYNIGAHRPiellryielleeylGKKALITFLPLQPGDVP  300
            PN  W G  PDP++S AP +VYNIG + P+ L+ ++E +E+ LGK A   ++ LQPGDVP
Sbjct  237  PNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVP  296

Query  301  DTYADVTALKEDTGYEPITPVEIGVQRFVEWYRDYYR  337
            +TYA+V  L  D ++ P T ++ GV++FV+WY +YY+
Sbjct  297  ETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

311) Nham_1302 in NC_007964


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  329 bits (1235),  Expect = 1e-91, Method: Compositional matrix adjust.
 Identities = 185/332 (56%), Positives = 260/332 (79%), Gaps = 1/332 (0%)

Query  6    ILVTGAAGFIGFHVAGRLLKEGRRVVGIDSLNDYYDPALKDGRLEILRKDSRFRFVKadl  65
            IL+TG+AGFIG H+A +L+K+G+ V+G+DS+NDYY  +LK++RL  + K++ F F K  L
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKEN-FTFNKVKL  61

Query  66   adraataalfaENRRSVVLHLAAQAGVRYSLQNPDAYVDSNLTAFANVLEGCRHAECPHL  125
             +    + +F +++  VV++LAAQAGVRYS++NP +Y+DSN+ +F N+LE  RH +  +L
Sbjct  62   ENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNL  121

Query  126  LFASSSSVYGANTKLPFSVRDNVDHPISLYAATKKSNELMAHAYSHLYRIPITGLRFFTV  185
            ++ASSSSVYGANT  PFS  DN+DHP+SLYAATKKSNELMAH+YSHLY +P TGLRFFTV
Sbjct  122  IYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTV  181

Query  186  YGPWYRPDMALYKFADAIVGGQPIRLFNHGDMRRDFTYVDDVVEAVIRLIDHVPRGEANW  245
            YGPW RPDMAL+KF+ AIV +Q+I ++NHG+M RDFTYVDD+VEA+ RL+   +  + +W
Sbjct  182  YGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEW  241

Query  246  SGDAPDPGTSPAPWRIYNIGNNKPAELMSVVAFLEKALGRTAQKEMLPMQPGDVQATFAD  305
            SG  PDPG+S AP ++YNIGNN P  LM  V  +E+ LG+ A+K+ + +QPGDV  T+A+
Sbjct  242  SGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYAN  301

Query  306  IDDLIRDVGFRPSTPLEDGIHRFAAWYCRYHR  337
            +DDL+RD++F+P T ++DG+++F  WY  Y +
Sbjct  302  VDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

312) VFMJ11_0184 in NC_011184


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  329 bits (1236),  Expect = 8e-92, Method: Compositional matrix adjust.
 Identities = 184/334 (56%), Positives = 257/334 (77%), Gaps = 0/334 (0%)

Query  1    MKYLVTGVAGFIGSATANKLNIAGHEVIGIDNLNGYYDVNLKQARLERIKHDLFRFISVD  60
            MK L+TG AGFIGS  A+KL   GH VIG+D++N+YY V+LK+ RL  I  + F F  V 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  61   IADRKAMESLFEEEKFDRVIHLAAQAGVRYSLENPYAYADSNLIGYLNILEGCRKNHVQH  120
            + +   +  +F +E+ + V++LAAQAGVRYS+ENP +Y DSN++G++NILE  R  ++Q+
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  121  LVYASSSSVYGLNAKVPFSTSDTVDHPVSLYAATKKSNELMAHSYSHLYDIPTTGLRFFT  180
            L+YASSSSVYG N+  PFSTSD +DHP+SLYAATKKSNELMAH+YSHLY++PTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  181  VYGSWGRPDMAPFIFTKKIIDGHTIDINNNGDMWRDFTHIDDIVEGIIRIVDVLPVKDDT  240
            VYG+WGRPDMA F FTK I+++++ID+ N+G+M RDFT +DDIVE+I R+V   +  +  
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  241  WTVESGTSASSSAPYKIYNVGHGSPINLIDFVKAIESELGIIAKKNFRGMQPGDVYQTYA  300
            W+     ++SS APYK+YN+G+ SP+ L++FV AIE+ LG  A+KN+ ++QPGDV +TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  301  DTQDLFDATGYKPKVTLKEGVAEFITWYRDFYGK  334
            + +DLF   ++KP  T+++GV  F+ WY ++Y K
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

313) Dalk_1699 in NC_011768


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  328 bits (1231),  Expect = 2e-91, Method: Compositional matrix adjust.
 Identities = 194/334 (59%), Positives = 272/334 (82%), Gaps = 1/334 (0%)

Query  1    MTQLITGAAGFIGFHLSKQLLEQGETVVGLDNLNDYYDPQLKTDRLKILRDYDNFVFEKG  60
            M  LITG+AGFIG HL+K+L+ QG+ V+G+D++NDYY   LK DRLK +   +NF F+K 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   EMADREFMPALFEKYGFEKVTNLAAQAGVRYSLKNPHSYVDSNLVGFTNILEGCRHTKVE  120
             + + + ++ +F     E V NLAAQAGVRYS+ NP++Y+DSN+VGF NILE  RH +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVFASSSSVYGANTDMPFSVHQNVDHPVSLYAASKKANELMAHAYSHLYGLPVTGLRFF  180
            +L++ASSSSVYGANT  PFS  +N+DHP+SLYAA+KK+NELMAH+YSHLY LP TGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFLFTKAILEGKPINVFNNGDMQRDFTYIDDIIQGVAKVLDNIpdpdp  240
            TVYGPWGRPDMALF FTKAI+++++I+V+N+G+M RDFTY+DDI++++++++ + + P+ 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  dwsgddpdpATSYTPYRLYNIGNNKPVKLLKFIELIEEALGMKAEKNMLPMQAGDVPATY  300
            +WSG DPDP++SY+PY++YNIGNN PV+L+ F+E IE+ LG  A KN + +Q+GDVP TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADIDDLARDAGYWPRTLVEDGVRNFINWYREYYK  334
            A++DDL RD ++ P T ++DGV +F++WY EYYK
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

314) Fbal_0146 in NC_014541


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  328 bits (1230),  Expect = 2e-91, Method: Compositional matrix adjust.
 Identities = 183/334 (55%), Positives = 261/334 (79%), Gaps = 3/334 (0%)

Query  1    MKILVTGAAGFIGFYVSSRLLEQGHQVVGLDNLNDYYDVSLKEARLAQLTAQDNFEFSRT  60
            MKIL+TG+AGFIG  ++ +L+ QGH V+G+D++NDYY VSLKE RL  + +++NF F++ 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  61   DLSDREAMAALFQNHQFDRVVHLAAQAGVRYSLDNPMAYVDSNLTGMVTILEGCRQTKVP  120
             L + + ++ +F ++Q + VV+LAAQAGVRYS++NP +Y+DSN+ G + ILE  R+ ++ 
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGMNKKVPFSEADAVDHPISLYAATKKSNELMAHTYSHLYGIPTTGLRFF  180
            +L+YASSSSVYG N   PFS +D +DHP+SLYAATKKSNELMAHTYSHLY +PTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMAAFKFTKKILAGEPIDVYNYGKLSRDFTYIDDIVEGVLRVMEAIPSADA  240
            TVYGPWGRPDMA FKFTK I+ +++IDVYN G++ RDFTY+DDIVE++ R++   +S++ 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  ERDCDRPDRST--APYALYNIGNHQPVELLTFIQTLEKALGVEANLNMMPMQPGDVYTTY  298
            E+    PD ++  APY +YNIGN+ PV L+ F++++E+ LG EA  N M +QPGDV  TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  299  ADTDNLRDAVGFSPDTSLADGLQRFADWYRSFYQ  332
            A+ D+L   ++F P+T++ DG+++F DWY  +Y+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

315) GNIT_2523 in NC_016041


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  328 bits (1229),  Expect = 3e-91, Method: Compositional matrix adjust.
 Identities = 193/337 (58%), Positives = 270/337 (81%), Gaps = 4/337 (1%)

Query  1    MKVLVTGAAGFIGAHTCRQLLdmdvdiigidnindyydTALKDARLDWIAEHENAARFRF  60
            MK+L+TG+AGFIG+H  ++L+  +  +IG+D+INDYY  +LK+ RL  I+ ++    F F
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKEN----FTF  56

Query  61   IKMDIAHREPMEALFKEHKFARVIHLAAQAGVRFSIENPHAYIDANIVGFMNILEGCRHN  120
             K+ + + + +  +F +++   V++LAAQAGVR+SIENP++YID+NIVGFMNILE  RH 
Sbjct  57   NKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHF  116

Query  121  QVEHLVYASSSSVYGANEAMPFSVDDNVDHPVSLYAASKKANELMAHTYSHLYNLPTTGL  180
            ++++L+YASSSSVYGAN + PFS  DN+DHP+SLYAA+KK+NELMAHTYSHLYNLPTTGL
Sbjct  117  NIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGL  176

Query  181  RFFTVYGPWGRPDMAPFKFTKAISAGQPIDVYNYGNHRRDFTYIDDIVSGVIKTMMHVAK  240
            RFFTVYGPWGRPDMA FKFTKAI  +Q+IDVYN GN  RDFTY+DDIV ++ + +   A 
Sbjct  177  RFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPAS  236

Query  241  PNLHWDAkspspssskGPWRVYNIGAQTPVHLLTFIETIEKALGKTAEKNLLPMQPGDVP  300
            PN +W +  P P+SS +P +VYNIG ++PV+L+ F+E+IE+ LGK A KN + +QPGDVP
Sbjct  237  PNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVP  296

Query  301  DTYADVEALVKDVGYRPNTTLDEGIEKFVKWYQAYYR  337
            +TYA+V+ L +D++++P+TT+++G++KFV WY  YY+
Sbjct  297  ETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

316) DMR_00110 in NC_012796


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  328 bits (1230),  Expect = 3e-91, Method: Compositional matrix adjust.
 Identities = 185/333 (56%), Positives = 266/333 (80%), Gaps = 1/333 (0%)

Query  1    MNILVTGAAGFIGFHLCRRFLSMGFHVTGLDNLNPYYSVALKKERIALLSADAKFRFVKE  60
            M+IL+TG+AGFIG HL ++++  G  V G+D++N YYSV+LK +R+  ++ + +F F K 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKV  59

Query  61   DMGDRASMDRLFDAGGFNYVVNLAAQAGVRHSLKCPEDYINANIIGYFNILENCRQHKVD  120
             + +   + ++F     + VVNLAAQAGVR S+  P  YI++NI+G+ NILE  R+ +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HFVFASSSSVYGLNTKMPFSVHDNVDHPISLYAASKKSNELMAHSYSYLFGLPCTGLRFF  180
            ++++ASSSSVYG NT  PFS  DN+DHP+SLYAA+KKSNELMAH+YS L+ LP TGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFLFTKAIIEGNPIQVFNHGQMERDFTYIDDIVEGVVRVTQNIPKPNP  240
            TVYGPWGRPDMALF FTKAI+++++I+V+NHG+M RDFTY+DDIVE++ R+ ++ + PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWNpaspdpsssvspYKLYNIGNNNSVTLLQFIEAIEEALGKEAIKEFLPLQPGDVPATC  300
            +W+ A PDP+SS +PYK+YNIGNN++V L++F+EAIE+ LGKEA K+++ LQPGDVP T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADIDDLIKDVGFKPATNIKTGIANFIAWYRDYY  333
            A++DDL++D++FKP T I+ G+ +F+ WY +YY
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

317) Atc_1646 in NC_015850


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  328 bits (1230),  Expect = 3e-91, Method: Compositional matrix adjust.
 Identities = 175/332 (53%), Positives = 258/332 (78%), Gaps = 4/332 (1%)

Query  5    RLLVTGAAGFIGFHLCRRLLAEGWTVRGIDNLNDYYDPALKRARLSQLEGHPAFTFQHLD  64
            ++L+TG+AGFIG HL ++L+ +G  V G+D++NDYY  +LK  RL  + G   FTF+ + 
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKVK  60

Query  65   IAQRDDLHRLFTGSRFDVVVNLAAQAGVRYSLEHPHSYADSNLLGFVNLLEGCRHQGVDH  124
            + + DDL ++F + + +VVVNLAAQAGVRYS+E+P++Y DSN++GF+N+LE  RH  +++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  125  LLFASSSSVYGANSRLPYSEHDPVDHPVSLYAATKRAGELMAHSYAHLYDIPVTGLRFFT  184
            L++ASSSSVYGAN+  P+S  D +DHP+SLYAATK++ ELMAH+Y+HLY++P TGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  185  VYGPWGRPDMAYFSFTRKILAGESIPVFNHGQMQRDFTYIDDIVEAVVRLVDHPPQRQVD  244
            VYGPWGRPDMA F FT+ I+ +++I V+NHG+M RDFTY+DDIVEA+ RLV  P+  + +
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  245  WPA---DPATSAAPFRIYNIGNHQPVALLDFIATLEECLGRKAQLELLPMQAGDVLATYA  301
            W++   DP++S AP+++YNIGN+ PV L++F+ ++E+ LG+ A+ + + +Q+GDV  TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  302  EVNDLAALVDFAPRTPLARGLAEFVRWYRQYY  333
            +V+DL   +DF P T +  G+  FV WY +YY
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

318) Mesci_4979 in NC_014923


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  328 bits (1229),  Expect = 3e-91, Method: Compositional matrix adjust.
 Identities = 173/340 (51%), Positives = 256/340 (76%), Gaps = 6/340 (1%)

Query  1    MKVLVTGAAGFIGYHVAKRLLERGDEVVGIDNVNDYYDPEIKEARLRLLDEASRKTNAGY  60
            MK+L+TG+AGFIG H+AK+L+ +G+ V+G+D++NDYY   +KE RL+ ++      +  +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG------KENF  54

Query  61   HFIRGNLADKSVVDACFADHAFDRVIHLAAQAGVRYSLENPHAYVESNIIAYTNMLEACR  120
             F + +L +   +   F D+  + V++LAAQAGVRYS+ENP++Y++SNI+++ N+LE  R
Sbjct  55   TFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSR  114

Query  121  NSAVAHLTYASTSSVYGANTDMPFSEHRPADHPLQFYAATKRANELMAHSYSQLFGLPTT  180
            +  + +L YAS+SSVYGANT  PFS     DHPL +YAATK++NELMAH+YS+L+ LPTT
Sbjct  115  HFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTT  174

Query  181  GLRFFTVYGPWGRPDMALFLFTKNILAGEPIKLFNNGNHTRDFTYVDDIAEGVIRASDSP  240
            GLRFFTVYGPWGRPDMALF FTK I+ +++I ++N+GN  RDFTYVDDI E++ R    P
Sbjct  175  GLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKP  234

Query  241  ATGNAAWDSSRPDPATSSAPWRIFNIGNNNPVKLTAYVEALENALGRKAIVELLPLQPGD  300
            A+ N  W ++ PDP++S AP +++NIGNN+PV+L  +VEA+EN LG+ A  + + LQPGD
Sbjct  235  ASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGD  294

Query  301  VPDTFADTSALEQAVGYRPTTTVTEGVGRFVEWYKAYFAR  340
            VP+T+A+   L + ++++P TT+ +GV +FV+WY  Y+ +
Sbjct  295  VPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

319) AvCA6_05410 in NC_021150


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  328 bits (1231),  Expect = 3e-91, Method: Compositional matrix adjust.
 Identities = 167/335 (50%), Positives = 264/335 (79%), Gaps = 2/335 (0%)

Query  1    MKVLVTGAAGFIGAHCVRRLLLDGHEVVGLDNFNDYYDPALKEDRVRWICREAGDFPLWR  60
            MK+L+TG+AGFIG+H  ++L+ +GH V+G+D++NDYY  +LKEDR++ I +E  +F + +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE--NFTFNK  58

Query  61   LDLGDADGVAGLFAAQRPEVVVHLAAQAGVRHSLSDPHAYVRSNLAGFLNILEGCRRQPV  120
            + L + D+++ +F  ++PEVVV+LAAQAGVR S+ +P++Y+ SN+ GF+NILE  R+  +
Sbjct  59   VKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNI  118

Query  121  QHLVYASSSSVYGANQHTPHSVQDNVDHPLSLYAASKKANELMAHSYSYLFGIPATGLRF  180
            Q+L+YASSSSVYGAN   P S  DN+DHPLSLYAA+KK+NELMAH+YS L+ +P+TGLRF
Sbjct  119  QNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRF  178

Query  181  FTVYGPWGRPDMSPIQFARAIVEGRPLRLFNYGRHQRDFTYIDDIVEGVVRLLPQPPRSD  240
            FTVYGPWGRPDM+ ++F++AIV+++++ ++N G   RDFTY+DDIVE++ RL+ +P+ ++
Sbjct  179  FTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPN  238

Query  241  PHWDRERPRAESSMAPWRLYNIGGHRPIALTDYIDTLERHLGRKALRELLPLQPGDVLDT  300
             +W    P + SS AP ++YNIG + P+ L ++++++E  LG+ A ++ + LQPGDV +T
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPET  298

Query  301  CADVSELQRDTGFQPQVSLEEGLARFVSWFCHYYR  335
             A+V +L RD +F+P+ ++++G+ +FV W+ +YY+
Sbjct  299  YANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

320) AvCA_05410 in NC_021149


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  328 bits (1231),  Expect = 3e-91, Method: Compositional matrix adjust.
 Identities = 167/335 (50%), Positives = 264/335 (79%), Gaps = 2/335 (0%)

Query  1    MKVLVTGAAGFIGAHCVRRLLLDGHEVVGLDNFNDYYDPALKEDRVRWICREAGDFPLWR  60
            MK+L+TG+AGFIG+H  ++L+ +GH V+G+D++NDYY  +LKEDR++ I +E  +F + +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE--NFTFNK  58

Query  61   LDLGDADGVAGLFAAQRPEVVVHLAAQAGVRHSLSDPHAYVRSNLAGFLNILEGCRRQPV  120
            + L + D+++ +F  ++PEVVV+LAAQAGVR S+ +P++Y+ SN+ GF+NILE  R+  +
Sbjct  59   VKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNI  118

Query  121  QHLVYASSSSVYGANQHTPHSVQDNVDHPLSLYAASKKANELMAHSYSYLFGIPATGLRF  180
            Q+L+YASSSSVYGAN   P S  DN+DHPLSLYAA+KK+NELMAH+YS L+ +P+TGLRF
Sbjct  119  QNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRF  178

Query  181  FTVYGPWGRPDMSPIQFARAIVEGRPLRLFNYGRHQRDFTYIDDIVEGVVRLLPQPPRSD  240
            FTVYGPWGRPDM+ ++F++AIV+++++ ++N G   RDFTY+DDIVE++ RL+ +P+ ++
Sbjct  179  FTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPN  238

Query  241  PHWDRERPRAESSMAPWRLYNIGGHRPIALTDYIDTLERHLGRKALRELLPLQPGDVLDT  300
             +W    P + SS AP ++YNIG + P+ L ++++++E  LG+ A ++ + LQPGDV +T
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPET  298

Query  301  CADVSELQRDTGFQPQVSLEEGLARFVSWFCHYYR  335
             A+V +L RD +F+P+ ++++G+ +FV W+ +YY+
Sbjct  299  YANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

321) Avin_05410 in NC_012560


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  328 bits (1231),  Expect = 3e-91, Method: Compositional matrix adjust.
 Identities = 167/335 (50%), Positives = 264/335 (79%), Gaps = 2/335 (0%)

Query  1    MKVLVTGAAGFIGAHCVRRLLLDGHEVVGLDNFNDYYDPALKEDRVRWICREAGDFPLWR  60
            MK+L+TG+AGFIG+H  ++L+ +GH V+G+D++NDYY  +LKEDR++ I +E  +F + +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE--NFTFNK  58

Query  61   LDLGDADGVAGLFAAQRPEVVVHLAAQAGVRHSLSDPHAYVRSNLAGFLNILEGCRRQPV  120
            + L + D+++ +F  ++PEVVV+LAAQAGVR S+ +P++Y+ SN+ GF+NILE  R+  +
Sbjct  59   VKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNI  118

Query  121  QHLVYASSSSVYGANQHTPHSVQDNVDHPLSLYAASKKANELMAHSYSYLFGIPATGLRF  180
            Q+L+YASSSSVYGAN   P S  DN+DHPLSLYAA+KK+NELMAH+YS L+ +P+TGLRF
Sbjct  119  QNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRF  178

Query  181  FTVYGPWGRPDMSPIQFARAIVEGRPLRLFNYGRHQRDFTYIDDIVEGVVRLLPQPPRSD  240
            FTVYGPWGRPDM+ ++F++AIV+++++ ++N G   RDFTY+DDIVE++ RL+ +P+ ++
Sbjct  179  FTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPN  238

Query  241  PHWDRERPRAESSMAPWRLYNIGGHRPIALTDYIDTLERHLGRKALRELLPLQPGDVLDT  300
             +W    P + SS AP ++YNIG + P+ L ++++++E  LG+ A ++ + LQPGDV +T
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPET  298

Query  301  CADVSELQRDTGFQPQVSLEEGLARFVSWFCHYYR  335
             A+V +L RD +F+P+ ++++G+ +FV W+ +YY+
Sbjct  299  YANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

322) UCYN_12340 in NC_013771


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  327 bits (1228),  Expect = 4e-91, Method: Compositional matrix adjust.
 Identities = 196/333 (59%), Positives = 268/333 (81%), Gaps = 7/333 (2%)

Query  3    KILVTGAAGFIGFHLSQYLLKNNNTIIGIDNLNSYYEISLKKARLDQLKTEKKFTFCLVD  62
            KIL+TG+AGFIG HL++ L+K+ + +IG+D++N YY +SLK  RL  +  E+ FTF  V 
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKEN-FTFNKVK  60

Query  63   IADQKHISQIFTEHQFDYVIHLAAQAGVRYSIENPYTYVDSNLTGFINILEGCRHGNIKH  122
            + +  ++S++F ++Q + V++LAAQAGVRYSIENP TY+DSN+ GF+NILE  RH NI++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  123  LVYASSSSVYGANKKIPFSISDNVDHPLSLYAATKKANELMAYTYSHLYNIPTTGLRFFT  182
            L+YASSSSVYGAN   PFS SDN+DHPLSLYAATKK+NELMA TYSHLYN+PTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  183  VYGPWGRPDMAYFLFTKSILSGQPINVFNQGNMKRDFTYIEDIVEGIAKVIDRIPMSSKT  242
            VYGPWGRPDMA F FTK+I+++Q+I+V+N+GNM RDFTY++DIVE+I++++ + + ++K 
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  243  -NGLESQ-----VPHKLYNIGNNKPVNLEYFIEVLEECLGCKAVKNYLPMQPGDVPITYA  296
             +G +++      P K+YNIGNN PV L  F+E +E+ LG  A KNY+ +QPGDVP TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  297  DIDDLEKDIGFKPNTDLRVGLEKFVSWYQEYYM  329
            ++DDL +DI+FKP+T ++ G++KFV WY EYY 
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

323) Syncc9902_0223 in NC_007513


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  327 bits (1228),  Expect = 4e-91, Method: Compositional matrix adjust.
 Identities = 185/336 (56%), Positives = 254/336 (76%), Gaps = 4/336 (1%)

Query  4    TVLVTGAAGFIGSALSQRLLQQGDRVVGVDNLNSYYDPALKQARLRQIEAVAQEGNWRFE  63
             +L+TG+AGFIGS L+++L++QG+ V+GVD++N YY  +LK+ RL+ I       N  F+
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG----KENFTFN  57

Query  64   SVALEHGEALMKLFSAEKPQVVVNLAAQAGVRYSIENPAAYIQSNLVGFGHILEGCRHHG  123
             V LE+ + L K+F  E+P+VVVNLAAQAGVRYSIENP +YI+SN+VGF +ILE  RH  
Sbjct  58   KVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFN  117

Query  124  VGNLVYASSSSVYGGNRNLPFDERQPVNHPVSLYAASKKANELMAHTYSHLYGLPATGLR  183
            + NL+YASSSSVYG+N + PF   + ++HP+SLYAA+KK+NELMAHTYSHLY LP+TGLR
Sbjct  118  IQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLR  177

Query  184  FFTVYGPWGRPDMAPMLFARAILAGEPIKVFNHGKMQRDFTYIDDIVEGVLRCCDKPATI  243
            FFTVYGPWGRPDMA   F++AI+ +++I V+NHG+M RDFTY+DDIVE++ R   KPA+ 
Sbjct  178  FFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASP  237

Query  244  NPDFDPLQPDPATAAAPHRVFNIGNSQPTELLRFIEVMEQALGCEAIKNFQPMQPGDVVA  303
            N +    +PDP+++ AP +V+NIGN+ P  L+ F+E +E+ LG EA KN+  +QPGDV  
Sbjct  238  NKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPE  297

Query  304  TAANTAALEDWVGFRPSTPIQVGVDRFAQWYRSFYS  339
            T AN   L   ++F+P T IQ GV++F +WY  +Y 
Sbjct  298  TYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

324) Ftrac_0598 in NC_014759


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  327 bits (1227),  Expect = 4e-91, Method: Compositional matrix adjust.
 Identities = 189/346 (55%), Positives = 268/346 (78%), Gaps = 16/346 (4%)

Query  3    KILVTGSAGFIGYHLTKALLERGDQVIGYDNINDYYDVNLKYGRLNELGIKRELVKNHQL  62
            KIL+TG+AGFIG HL+K L+ +G+ VIG D+INDYY V+LK +RL+ +G           
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE---------  52

Query  63   VLSEQYPNFRFVKADLCDRDYLYQLFEEEQFDHVINLAAQAGVRYSVENPQAYIDANIQG  122
                   NF F K  L + D L ++F +EQ + V+NLAAQAGVRYS+ENP++YID+NI G
Sbjct  53   -------NFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVG  105

Query  123  FLNILEACRHYPVKHLVYASSSSVYGSNTQMPFSVHHHTDHPLSLYAATKKSNEMMAHTY  182
            F+NILE  RH+ +++L+YASSSSVYG+NT  PFS  ++ DHPLSLYAATKKSNE+MAHTY
Sbjct  106  FMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTY  165

Query  183  SHLFNIATTGIRFFTVYGSWGRPDMALFLFAEAIRKGEKIKVFNQGEMERDFTYVGDIVK  242
            SHL+N++TTG+RFFTVYG+WGRPDMALF F+ AI +++ I V+N+G+M RDFTYV+DIV 
Sbjct  166  SHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVE  225

Query  243  GVMAALDQPATSNAAFDTNIPDAGSSNAPYRLYNIGNNQPVKLLDYIKALEKAMGKTAEK  302
            ++   + +PA++N       PD+GSS APY++YNIGNN PV+L++++ A+E+ +GK A K
Sbjct  226  AISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARK  285

Query  303  EFLPMQPGDVQKTYADVQDLINDFNYQPNTPLEKGIEEFVSWFIEY  348
            +++ +QPGDV  TYA+V+DL+ D++++P+T ++ G++ FV W++EY
Sbjct  286  NYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEY  331

325) mlr7549 in NC_002678


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  327 bits (1227),  Expect = 4e-91, Method: Compositional matrix adjust.
 Identities = 172/338 (51%), Positives = 257/338 (77%), Gaps = 6/338 (1%)

Query  1    MKVLVTGAAGFIGYHVARRLLERGDEVVGIDSVNDYYDPRIKQARLRLLAEASRGSNAGY  60
            MK+L+TG+AGFIG H+A++L+ +G+ V+G+DS+NDYY   +K+ RL+ ++      +  +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG------KENF  54

Query  61   HFIHGNLAEREIVDGCFADHDFDRVIHLAAQAGVRYSLENPRAYVESNIVAFTNMLEACR  120
             F   +L + + +   F D++ + V++LAAQAGVRYS+ENPR+Y++SNIV+F N+LE  R
Sbjct  55   TFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSR  114

Query  121  NAGMAHLTYASTSSVYGANTDMPFSEHRPADHPLQFYAATKRANELMAHSYSHLFGLPTT  180
            +  + +L YAS+SSVYGANT  PFS     DHPL +YAATK++NELMAH+YSHL+ LPTT
Sbjct  115  HFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTT  174

Query  181  GLRFFTVYGPWGRPDMALFLFTRSILAGEPIKLFNNGNHTRDFTYIDDIAEGVIRASDSP  240
            GLRFFTVYGPWGRPDMALF FT++I+ +++I ++N+GN  RDFTY+DDI E++ R    P
Sbjct  175  GLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKP  234

Query  241  AAGNPAWDSGHPDPATSSAPWRIFNIGNNNPVKLTAYVEALESALGRKAVIELLPLQAGD  300
            A+ N  W +++PDP++S AP +++NIGNN+PV+L  +VEA+E+ LG+ A  + + LQ+GD
Sbjct  235  ASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGD  294

Query  301  VPDTFADTTALQEAVGYRPGTSVSDGVGRFVEWYKAYF  338
            VP+T+A+   L   ++++P T++ DGV +FV+WY  Y+
Sbjct  295  VPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

326) Celal_3145 in NC_014934


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  327 bits (1227),  Expect = 5e-91, Method: Compositional matrix adjust.
 Identities = 189/352 (54%), Positives = 263/352 (75%), Gaps = 28/352 (7%)

Query  1    MKVLVTGAAGFIGFHTAQKLLDNGHEVVGLDNINDYYDTDLKFARLKELGILRKNATLFN  60
            MK+L+TG+AGFIG H A+KL+ +GH V+G+D+INDYY   LK  RLK +G          
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG----------  50

Query  61   SLSNSETFKDQFKFIRLNIEDRKNLPALFAEENFDIVCNLAAQAGVRYSIENPETYIDSN  120
                    K++F F ++++E+  +L+ +F +E+ ++V NLAAQAGVRYSIENP TYIDSN
Sbjct  51   --------KENFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSN  102

Query  121  IVGFLNILECCRHHSINHLVYASSSSVYGLNKEVPFKTTDTVDHPISLYAASKKANELMA  180
            IVGF+NILEC RH +I++L+YASSSSVYG N   PF T+D +DHP+SLYAA+KK+NELMA
Sbjct  103  IVGFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMA  162

Query  181  HTYSHLYGFATTGLRFFTVYGPWGRPDMAIYLFTDAISKNKPIKVFNHGDMERDFTYVDD  240
            HTYSHLY ++TTGLRFFTVYGPWGRPDMA++ FT AI ++++I V+NHG+M RDFTYVDD
Sbjct  163  HTYSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDD  222

Query  241  IVEGVFRIIEKDTK----------ERITKNEGYKIYNIGNNDSVKLTDFIIEIEKNLAVT  290
            IVE++ R++ K +           +  +    YK+YNIGNN +V+L +F+  IE++L+  
Sbjct  223  IVEAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKE  282

Query  291  AQKEFLPMQPGDVARTWANVDELITDYNYSPKTSVSSGIKKFVQWYQEYHSK  342
            A+K+++ +QPGDV+ T ANVD+L+ D ++ P T++  G++KFV+WY EY  K
Sbjct  283  ARKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

327) CtCNB1_0108 in NC_013446


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  327 bits (1226),  Expect = 5e-91, Method: Compositional matrix adjust.
 Identities = 177/332 (54%), Positives = 254/332 (77%), Gaps = 1/332 (0%)

Query  4    VLITGCAGFIGMHCAKRLLEQGVPVLGIDNLNNYYDVALKHARLAELRPHAHFRFVELDL  63
            +LITG AGFIG H AK+L+ QG  V+G+D++N+YY V+LK+ RL  +    +F F  + L
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKVKL  61

Query  64   ADRQGMADLFAEAAPSKVLHLAAQAGVRYSIDQPDDYTDSNLLGFGNILQGCRKHQVEHL  123
             + ++++ +F +  P  V++LAAQAGVRYSI++P  Y DSN++GF NIL+  R  ++++L
Sbjct  62   ENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNL  121

Query  124  VYASSSSVYGGNTRMPFAESDAVDHPISYYAATKKANELMAHSYAHLYGIPTTGLRFFTV  183
            +YASSSSVYG+NT  PF+ SD +DHP+S YAATKK+NELMAH+Y+HLY +PTTGLRFFTV
Sbjct  122  IYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTV  181

Query  184  YGPWGRPDMALFKFTKAMLAGESIDVYGEGKLVRDFTYIDDIVEGIMRVLDKPATPDAGY  243
            YGPWGRPDMALFKFTKA++ +++IDVY +G+++RDFTY+DDIVE+I R++ KPA+P+   
Sbjct  182  YGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEW  241

Query  244  DSRNPNPGTSTAPYRIFNIGNNSPTVLMDYIAALEGALKITARKQMLPIQPGDMHSTSAD  303
             + +P+PG+S APY+++NIGNNSP  LM+++ A+E  L   ARK+ + +QPGD+  T A+
Sbjct  242  SGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYAN  301

Query  304  TRALQAWVGFSPAMPVATGVQHFVDWYRSFYR  335
               L   ++F P   +  GV+ FVDWY  +Y+
Sbjct  302  VDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

328) SPISAL_08130 in NC_021291


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  327 bits (1226),  Expect = 5e-91, Method: Compositional matrix adjust.
 Identities = 169/334 (51%), Positives = 256/334 (77%), Gaps = 2/334 (0%)

Query  1    MKLLVTGAAGFIGYHTCAQLLARGDTVVGLDNLGPYYDVTLKEARLAQLQDAPRFDFRRV  60
            MK+L+TG+AGFIG H   +L+ +G+ V+G+D++  YY V+LKE RL  +     F F +V
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKV  59

Query  61   DLADAGAIRQVF-SEGFDRVIHLAAQAGVRYSLENPQSYVDSNVTGFLNVLEGCRYNAVE  119
             L + + + +VF  E  + V++LAAQAGVRYS+ENP++Y+DSN+ GF+N+LE  R   ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  120  HLVYASTSSVYGANTHMPFTEHEPADHPLAIYGATKRANELMAHSYAHLFGLPCTGLRFF  179
            +L+YAS+SSVYGANT  PF+  +  DHPL++Y+ATK++NELMAH+Y+HL+ LP TGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  180  TVYGPWGRPDMALFLFTRKILAGEPIQVFNHGHHQRDFTFVEDIVEGVIRACDNPATGNP  239
            TVYGPWGRPDMALF FT+ I+ +++I+V+NHG+  RDFT+V+DIVE++ R   +PA+ N 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  240  DWDSDHPDPATSAAPWRLFNIGNNQPVQLFHYIKVLESELGLEADMEMLPLQPGDVPDTW  299
            +W + +PDP++S AP +++NIGNN PV+L +++  +E+ LG EA  + + LQPGDVP+T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  300  ASAKDLEQAVRYQPATSVEEGIRRFVAWYRDYYQ  333
            A+  DL + + ++P T++++G+ +FV WY +YY+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

329) noeL in NC_017249


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  326 bits (1222),  Expect = 1e-90, Method: Compositional matrix adjust.
 Identities = 170/330 (52%), Positives = 256/330 (78%), Gaps = 1/330 (0%)

Query  4    VIVTGAAGFIGMHVCERLLARGERVVGIDAITPYYDPALKRARLATLEHHPGFKFHKIDL  63
            +++TG+AGFIG H+  +L+ +G+ V+G+D+I  YY  +LK  RL ++  +  F F+K+ L
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKVKL  61

Query  64   ADFAAVTRVFDEVSPDRVVHLAAQPGVRASIDDPITSIRANCDGFVTVLEAGRRHGLAHL  123
             ++  +++VF +  P+ VV+LAAQ+GVR SI++P T I +N  GF+ +LE +R+  + +L
Sbjct  62   ENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNL  121

Query  124  VYASSSSVYGANRTLPYSTEHSVNHPVSLYAASKKANELMAHTFAHVHKLPVTGLRFFTV  183
            +YASSSSVYGAN + P+ST ++++HP+SLYAA+KK+NELMAHT++H+ +LP TGLRFFTV
Sbjct  122  IYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTV  181

Query  184  YGPWGRPDMAAYLFTRAIFANEPIRIFNKGDMWRDFTYVDDIVEGVIRTLDRPAAPNPAW  243
            YGPWGRPDMA + FT+AI  +++I ++N G+M RDFTYVDDIVE++ R + +PA+PN  W
Sbjct  182  YGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEW  241

Query  244  NAERPENSSSYAPYRVYNIGNNRSVNLMEFVETLEKIIGKPAIRQLLPMQAGDVLETRAD  303
            ++  P+ +SSYAPY+VYNIGNN +V LMEFVE++E+ +GK A ++ + +Q+GDV ET A+
Sbjct  242  SGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYAN  301

Query  304  ISALQRDVGFSPSTSIADGLGRFVEWYRKY  333
            +  L RD++F P T+I DG+ +FV+WY  Y
Sbjct  302  VDDLFRDIDFKPETTIQDGVNKFVDWYLEY  331

330) Mesau_05055 in NC_019973


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  326 bits (1222),  Expect = 1e-90, Method: Compositional matrix adjust.
 Identities = 171/340 (51%), Positives = 257/340 (76%), Gaps = 6/340 (1%)

Query  1    MKVLVTGAAGFIGYHVARRLLERGDEVVGIDSINDYYDPQIKQARLRLLDEASRKTNAGY  60
            MK+L+TG+AGFIG H+A++L+ +G+ V+G+DSINDYY   +K+ RL+ ++      +  +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG------KENF  54

Query  61   HFIHGDLADRGVVDGCFADHAFDRVIHLAAQAGVRYSLENPRAYVESNIIAYTNMLEACR  120
             F    L + + +   F D+  + V++LAAQAGVRYS+ENPR+Y++SNI+++ N+LE  R
Sbjct  55   TFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSR  114

Query  121  DSRVGHLTYASTSSVYGANTDMPFSEHRPADHPLQFYAATKRANELMAHSYSHLFGLPTT  180
            +  + +L YAS+SSVYGANT  PFS     DHPL +YAATK++NELMAH+YSHL+ LPTT
Sbjct  115  HFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTT  174

Query  181  GLRFFTVYGPWGRPDMALFLFTRSILAGEPIKLFNNGNHTRDFTYVEDIAEGVIRASDSP  240
            GLRFFTVYGPWGRPDMALF FT++I+ +++I ++N+GN  RDFTYV+DI E++ R    P
Sbjct  175  GLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKP  234

Query  241  AAANPAWDSGRPDPATSSAPWRIFNIGNNNPVKLTAYVEALENALGRKAVIELLPLQAGD  300
            A++N  W ++ PDP++S AP +++NIGNN+PV+L  +VEA+EN LG+ A  + + LQ+GD
Sbjct  235  ASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGD  294

Query  301  VPDTFADTSALQAAVGYRPRTSVTEGVGRFVEWYQDYFGR  340
            VP+T+A+   L   ++++P T++ +GV +FV+WY +Y+ +
Sbjct  295  VPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

331) Acin_0072 in NC_016077


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  326 bits (1223),  Expect = 8e-91, Method: Compositional matrix adjust.
 Identities = 189/334 (57%), Positives = 254/334 (77%), Gaps = 12/334 (3%)

Query  1    MPIFITGAAGFIGYHLALRLLSKGYAVHGMDNLNAYYEVALKKERLKRLSYYPGFSFTEG  60
            M I+ITG+AGFIG HLA +L+ +G  V G+D++N YY V+LK +RLK ++    F+F   
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DISDKDAVEGVFTKLSPKIVVNLAAQAGVRYSIDHPRDYIDSNIVGFFTILEACRHHSVN  120
             + + D +  VF    P +VVNLAAQAGVRYSI++PR YIDSNIVGF  ILE  RH +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGNQEKTPFSVTDPVDHPISLYAATKKSNELMAYTYSHLYGVPTTGLRFF  180
            +L+YASSSSVYG +   PFS +D +DHP+SLYAATKKSNELMA TYSHLY +PTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPFGRPDMAYFKFANKIMKDEPITIYNHGDMYRDFTYVDDIVTGIENLL--PHPPQD  238
            TVYGP GRPDMA FKF++ I++D++I +YNHG+M RDFTYVDDIV +I  L+  P +P+ 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  239  GFGG---------DPYRIYNIGNSTPVKLMTFIEILEKALGKEAQKEYLPMQPGDVYQTF  289
              +G          PY++YNIGN++PV+LM F+E +E+ LGKEA+K+Y+ +QPGDV +T+
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  290  ADVSALEKDFGFKPTTTIEEGLKKFAQWYKAYYH  323
            A+V  L +D++FKP TTI++G++KF +WY  YY 
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

332) Nwi_1074 in NC_007406


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  326 bits (1223),  Expect = 9e-91, Method: Compositional matrix adjust.
 Identities = 189/332 (57%), Positives = 262/332 (79%), Gaps = 1/332 (0%)

Query  6    ILVTGAAGFIGFHVAARLLKQGHRVVGIDSLNDYYDPALKECRLEILRGDSRFRFVKSDL  65
            IL+TG+AGFIG H+A +L+KQGH V+G+DS+NDYY  +LKE RL  + G   F F K  L
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKVKL  61

Query  66   ADREATAALFAEHHLSVVLHLAAQAGVRYSLRNPHAYVDSNLTAFANVLEGCRHASCPHL  125
             + +  + +F +++  VV++LAAQAGVRYS+ NP++Y+DSN+ +F N+LE  RH +  +L
Sbjct  62   ENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNL  121

Query  126  LFASSSSVYGANTKLPFSVHDNVDHPISLYAATKKSNELMAHAYSHLYRVPTTGLRFFTV  185
            ++ASSSSVYGANT  PFS  DN+DHP+SLYAATKKSNELMAH+YSHLY +PTTGLRFFTV
Sbjct  122  IYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTV  181

Query  186  YGPWYRPDMALYKFADAIVGGQPIKLFNHGNMQRDFTFVDDVVEAVVRLIDRAPQPHasw  245
            YGPW RPDMAL+KF+ AIV +Q+I ++NHGNM RDFT+VDD+VEA+ RL+ +++ P+  W
Sbjct  182  YGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEW  241

Query  246  sgdasdagtssaPWRIYNIGNNKPAELMGVVALLEKALGRSAQKELLPMQPGDVQATFAD  305
            SG  +D+G+S AP ++YNIGNN P  LM  V  +E+ LG+ A+K+ + +QPGDV  T+A+
Sbjct  242  SGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYAN  301

Query  306  IDDLARDVGFRPSTSLEDGIHRFADWYCRYHR  337
            +DDL RD++F+P T+++DG+++F DWY  Y +
Sbjct  302  VDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

333) A2cp1_4436 in NC_011891


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  325 bits (1220),  Expect = 1e-90, Method: Compositional matrix adjust.
 Identities = 178/331 (54%), Positives = 258/331 (78%), Gaps = 14/331 (4%)

Query  4    ILVTGAAGFIGHFVAKRLLAAGRQVVGIDNLVPYYDVALKEARLARLTGIPGFRFERMDL  63
            IL+TG+AGFIG  +AK+L+  G+ V+G+D++  YY V+LKE RL  + G   F F+++ L
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKVKL  61

Query  64   ADRAAAERLFAEVRPDGVIHLAAQPGVRYSLENPHAYVDANITGFLNVLEGCRHHAVQHL  123
             +     ++F + +P+ V++LAAQ+GVRYS+ENP++Y+D+NI GF+N+LE  RH  +Q+L
Sbjct  62   ENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNL  121

Query  124  VYASSSSVYGGNTKVPFSVGDNVDHPVSLYAATKKANELMAHTYSHLFGIPATGLRFFTV  183
            +YASSSSVYG+NT  PFS +DN+DHP+SLYAATKK+NELMAHTYSHL+ +P+TGLRFFTV
Sbjct  122  IYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTV  181

Query  184  YGPWGRPDMAPMLFTKAILEGRPIKVFNHGNMKRDFTYVDDIVEGVLRVYERPPPGAGVR  243
            YGPWGRPDMA   FTKAI+++++I V+NHGNM RDFTYVDDIVE++ R+  +P++    +
Sbjct  182  YGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEW  241

Query  244  A-------------RVYNIGNSTPVDLMHFIGTLERLLGREAEKQMLPMQAGDVPATFAD  290
            +             +VYNIGN++PV LM+F+ ++E  LG+EA K+ + +Q+GDVP T+A+
Sbjct  242  SGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYAN  301

Query  291  VSDLEHDIDFRPRTSLEDGLRQLVEWYREFY  321
            V DL +DIDF+P T+++DG+ ++V+WY E+Y
Sbjct  302  VDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

334) R2APBS1_2153 in NC_020541


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  325 bits (1220),  Expect = 1e-90, Method: Compositional matrix adjust.
 Identities = 168/334 (51%), Positives = 251/334 (76%), Gaps = 2/334 (0%)

Query  1    MKVLVTGTAGFIGSHVALQLLERGDEVIGLDNLNDYYDVNLKKARLARFIAHPGYTHVHA  60
            MK+L+TGTAGFIGSH+A +L+ +G+ VIG+D++NDYY V+LK  RL   I+   +T    
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKS-IGKENFTFNKV  59

Query  61   DLADRTAMENAFAAHKPRRVINLAAQAGVRYAAENPHVYVASNVTGFLHVLEGCRRHEVE  120
             L +   + + F  ++P  V+NLAAQAGVRY+ ENP+ Y+ SN+ GF+++LE  R+ +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVFASTSSVYGADTAMPFSEHQSTEHPLTLYAASKKANEQMAHSYAHLYGIPCTGLRFF  180
            +L++AS+SSVYGA+T+ PFS  ++ +HPL+LYAA+KK+NE MAH+Y+HLY +P TGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFLFTRAILAGEPIKVFNHGRHKRSFTYVDDIVEGVIRTLDTLPGKDS  240
            TVYGPWGRPDMALF FT+AI+ +++I V+NHG   R FTYVDDIVE++ R +   ++ + 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DWNGNAPDPASSGVAPYRLYNIGNAEAVELLRYIAVLEQCLGRKAQMEMLPMQAGDVPDT  300
            +W+G  PDP+SS  APY++YNIGN  +V L+ ++  +E+ LG+ A+ + + +Q+GDVP+T
Sbjct  240  EWSGADPDPGSS-YAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPET  298

Query  301  EADVSELIRAVGYAPKVPIGTGIANFVSWYRGYY  334
             A+V +L+R +++ P   I  G+ +FV WY  YY
Sbjct  299  YANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

335) capI in NC_013861


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  325 bits (1219),  Expect = 2e-90, Method: Compositional matrix adjust.
 Identities = 192/335 (58%), Positives = 257/335 (77%), Gaps = 1/335 (0%)

Query  1    MRILITGCAGFIGMHTALRFLERKEEVIGVDSLNNYYDVRLKKARLAQLTSSPNFKFYPF  60
            M+ILITG AGFIG H A +++ + + VIGVDS+N+YY V LK  RL  + +  NF F   
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  61   DIGHCQSVHNLFVDEKPSLVVHLAAQVGVRYSLINPQAYIDSNIQGFMNILEACRHHSIE  120
             + + + + ++FVDE+P +VV+LAAQ GVRYS+ NP++YIDSNI GFMNILE  RH +I+
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGNNILIPFDESYDTCHPVSLYAATKKSNELMAHVYSHLYQLPTTGLRFF  180
            +L+YASSSSVYG N   PF  S +  HP+SLYAATKKSNELMAH YSHLY+LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMAFFKFTQAMVTGKPIDIYNNGEMIRDFTYIDDIVEGIVRIVDKSSATAN  240
            TVYGPWGRPDMA+FKFT+A+V +++ID+YN+G+M+RDFTY+DDIVE+I R+V K+++  +
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  DDNLTKNSSADADIPYRVFNIGNNHPIDLITYIQAIEHALGIKALKNYLPMQPGDVLATA  300
            + + +   ++ +  PY+V+NIGNN P+ L+ +++AIE+ LG  A KNY+ +QPGDV  T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ANIEALEEWISFKPSTPISLGVQHFVDWYREYYMK  335
            AN++ L   I FKP T I  GV+ FVDWY EYY K
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

336) Acfer_0500 in NC_013740


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  325 bits (1219),  Expect = 2e-90, Method: Compositional matrix adjust.
 Identities = 185/332 (56%), Positives = 255/332 (77%), Gaps = 12/332 (3%)

Query  9    KILITGAAGFIGYHLAKRLLSLGVQVAGLDNMNAYYDVQLKKDRLARLELYPAFSFTQGD  68
            KILITG+AGFIG HLAK+L+  G  V G+D++N YY V LK DRL  +     F+F +  
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKVK  60

Query  69   LADGETVNRIFEEFRPDIVVNLAAQAGVRYSIDHPREYIDSNIIGFFNILEACRHYQPEH  128
            L + + ++++F + +P++VVNLAAQAGVRYSI++PR YIDSNI+GF NILE  RH++ ++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  129  LLFASSSSVYGNQKKTPFATTDNVDHPISLYAATKKSDELMAYTYCHLYGIPSTGLRFFT  188
            L++ASSSSVYG +   PF+T+DN+DHP+SLYAATKKS+ELMA TY HLY +P+TGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  189  VYGPFGRPDMAYFKFTNKIMKGEPITIFNQGDMYRDFTYVDDIVTGIQNMLCCPPKPN--  246
            VYGP GRPDMA FKFT+ I+++++I ++N+G+M RDFTYVDDIV +I  ++  P+ PN  
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  247  ---GEGD------RYKIYNIGNNHPEKLMTFIETLEKALGKTAEKEYMPMQPGDVYQTYA  297
               ++ D       YK+YNIGNN P +LM F+E++E+ LGK A K+YM +QPGDV +TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  298  DVSELEKDFGFRPSTSIAEGLGKFARWYREYY  329
            +V +L +D++F+P T+I +G+ KF  WY EYY
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

337) cce_2101 in NC_010546


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  325 bits (1219),  Expect = 2e-90, Method: Compositional matrix adjust.
 Identities = 187/334 (56%), Positives = 270/334 (81%), Gaps = 12/334 (3%)

Query  2    VKVLVTGAAGFIGFHVSQKLLHQGETILGIDNLNSYYDVFLKKARLKQIKTYEKFRFYQL  61
            +K+L+TG+AGFIG H+++KL+ QG+ ++G+D++N YY V LK  RLK I   E+F F ++
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  62   DIADRKSISELFTQHNFDYVIHLAAQAGVRYSLENPYAYVDSNLVGFVNILEGCRHQNIK  121
             + +   +S +F +++ + V++LAAQAGVRYS+ENP +Y+DSN+VGF+NILE  RH NI+
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  122  HLMYASSSSVYGKNKKIPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGIPTTGLRFF  181
            +L+YASSSSVYG N   PFST D++DHP+SLYAATKK+NELMAHTYSHLY +PTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  182  TVYGPWGRPDMAYFLFTKAILEEKPIKVFNYGKMKRDFTYIDDIVEGIIHVMNNI-----  236
            TVYGPWGRPDMA F FTKAI+++++I V+N G+M RDFTY+DDIVE+I +++++      
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  237  ------PQSDNSSVPYKVYNIGNNQPVELGHFIEVLEDCIGKKAIKEFLPMQPGDVPMTY  290
                  P++++S  PYKVYNIGNN PV L +F+E +E+ +GK A K+++ +QPGDVP TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  291  ADVDELIKDVGFQPNTSLKTGLEKFVNWYRDYYQ  324
            A+VD+L++D++F+P+T+++ G++KFV+WY +YY+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

338) Tola_0275 in NC_012691


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  325 bits (1218),  Expect = 2e-90, Method: Compositional matrix adjust.
 Identities = 183/334 (55%), Positives = 246/334 (74%), Gaps = 1/334 (0%)

Query  1    MHYLVTGAAGFIGFHVAERLLAAGHQVTGLDNLNDYYDVNLKLSRLALLQAHPAFHFVKG  60
            M  L+TG+AGFIG H+A +L+  GH V G+D++NDYY V+LK  RL  + +   F F K 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  61   DLADRTLMADLFTNGQFRRVIHLGAQAGVRYSLDNPHAYADANLVGHLNILEGCRQHKIE  120
             L +   ++ +F + Q   V++L+AQAGVRYS++NP++Y D+N+VG +NILE  R+ +I+
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLLYASSSSVYGLNRKTPFSVNDSVDHPVSLYAATKKANELMSHSYAHLYGLPCTGLRFF  180
            +L+YASSSSVYG N   PFS +D++DHP+SLYAATKK+NELM+H+Y+HLY LP TGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTKAILAGQPIDVYNFGEMKRDFTFIDDIAEAIIRLAEVIPQPNA  240
            TVYGPWGRPDMALFKFTKAI+ +Q+IDVYN G+M RDFT++DDI EAI RL    + PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  EWTVETGSPAESSAPYRVYNIGNSQPVELKTFIHELEQALGIPAQMNLLPLQPGDVLETS  300
            EW+     P+ S APY+VYNIGN+ PV L  F++ +E+ LG  A+ N + LQPGDV ET 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTSALETVIGFKPQTPLASGLARFVSWYKSFYS  334
            A+   L   I+FKP+T +  G+ +FV WY  +Y 
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

339) Adeh_0221 in NC_007760


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  324 bits (1217),  Expect = 2e-90, Method: Compositional matrix adjust.
 Identities = 173/331 (53%), Positives = 256/331 (78%), Gaps = 13/331 (3%)

Query  5    LVTGAAGFIGFHLAKALLERGDEVLGIDSMVPYYDVRLKEARLAQLTGRPGFTFERLDLA  64
            L+TG+AGFIG HLAK L+ +G+ V+G+DS+  YY V LKE RL  + G+  FTF+++ L 
Sbjct  4    LITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKVKLE  62

Query  65   DRDATARLFERARFGAVVHLAAQPGVRYSLENPHAYVDANVTGFLDVLEGCRHHPVRHLV  124
            + D  +++F   +   VV+LAAQ+GVRYS+ENP++Y+D+N+ GF+++LE  RH  +++L+
Sbjct  63   NYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNLI  122

Query  125  YASSSSVYGGNSKVPFAVTDNVDHPVSLYAATKKANELMAYTYSHLFAIPATGLRFFTVY  184
            YASSSSVYG+N+  PF+ +DN+DHP+SLYAATKK+NELMA TYSHL+ +P+TGLRFFTVY
Sbjct  123  YASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTVY  182

Query  185  GPWGRPDMAPMLFARAILEGQPIKVFNHGQMRRDFTYVDDIVEGVIRVLDRPPA------  238
            GPWGRPDMA   F++AI+++Q+I V+NHG+M RDFTYVDDIVE++ R++ +P++      
Sbjct  183  GPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEWS  242

Query  239  ------AGVVPPHRLYNIGNSQPVELLRFIEVMEEALGKKAVRELLPMQPGDVPATFADV  292
                  ++  +P ++YNIGN+ PV L+ F+E +E+ LGK A ++ + +QPGDVP T+A+V
Sbjct  243  GADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYANV  302

Query  293  SELERDVGFRPATSIEEGVRRFVAWYRTYHR  323
             +L RD++F+P T+I++GV +FV WY  Y +
Sbjct  303  DDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

340) CCV52592_1226 in NC_009715


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  324 bits (1217),  Expect = 3e-90, Method: Compositional matrix adjust.
 Identities = 200/348 (58%), Positives = 270/348 (78%), Gaps = 16/348 (4%)

Query  1    MKILVTGTAGFIGFHLANALAARGDEVVGFDNINDYYDVNLKFARLKTAGFDTNEIAAGK  60
            MKIL+TGTAGFIG HLA+ L  +G+ V+G D+INDYY V+LK  RLK+ G          
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG----------  50

Query  61   QIRSKMKPNLSFVKGDLQEARLLKRLFGEHKFDAVVNLAAQAGVRYSLINPQAYIDANVT  120
                  K N++F K  L++   L ++F +++ + VVNLAAQAGVRYS+ NP++YID+N+ 
Sbjct  51   ------KENFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIV  104

Query  121  GFLNILECCRHNATPNLVYASSSSVYGLNENMPFSTHEGVNHPISLYAATKKSNEMMAHT  180
            GF+NILEC RH    NL+YASSSSVYG N + PFST + ++HP+SLYAATKKSNE+MAHT
Sbjct  105  GFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHT  164

Query  181  YSHLFGVPTTGLRFFTVYGPWGRPDMALFLFVKAALSGGTIDVFNYGKMKRDFTYIDDIV  240
            YSHL+ +PTTGLRFFTVYGPWGRPDMALF F KA +++ +IDV+N G+M RDFTY+DDIV
Sbjct  165  YSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIV  224

Query  241  KGVMKCVdnparanaawdakapdpasssapFKIYNIGNNSPVELMDYIKAIELKIGREIN  300
             ++ + V +PA +N  W +  PDP+SS AP+K+YNIGNNSPV LM+++ AIE K+G+E  
Sbjct  225  EAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEAR  284

Query  301  KNFLPLQAGDVPATYADVSDLIADFDYKPNTSVNEGVARFIEWYSEFY  348
            KN++ LQ+GDVP TYA+V DL+ D+D+KP+T++++GV +F++WY E+Y
Sbjct  285  KNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

341) SYNW0200 in NC_005070


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  324 bits (1217),  Expect = 3e-90, Method: Compositional matrix adjust.
 Identities = 173/335 (52%), Positives = 257/335 (77%), Gaps = 4/335 (1%)

Query  4    TVLVTGAAGFIGAALSQRLLARGERVVGLDNLNSYYDPALKQARLRQVEATASKGAWRFE  63
             +L+TG+AGFIG+ L+++L+ +G+ V+G+D++N YY  +LK+ RL+ +    +K    F+
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI----GKENFTFN  57

Query  64   PISLEDGDALTALFAEERPDVVVNLAAQAGVRYSLENPAAYIQSNLVGFGHILEGCRHHD  123
             + LE+ D L+ +F +E+P+VVVNLAAQAGVRYS+ENP +YI+SN+VGF +ILE  RH +
Sbjct  58   KVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFN  117

Query  124  VGHLVYASSSSVYGGNRNLPFHERQPVNHPVSLYAASKKANELMAHTYSHLYGVPATGLR  183
            + +L+YASSSSVYG+N + PF   + ++HP+SLYAA+KK+NELMAHTYSHLY +P+TGLR
Sbjct  118  IQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLR  177

Query  184  FFTVYGPWGRPDMAPMLFARAILAGEPIKVFNHGRMQRDFTYIDDIVEGVLRCCDKPATA  243
            FFTVYGPWGRPDMA   F++AI+ +++I V+NHG M RDFTY+DDIVE++ R   KPA++
Sbjct  178  FFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASP  237

Query  244  NPDFDPLQPDPATAAAPHRVFNIGNSQPTELLSFIEVMEQALGRDAIKDFQPMQPGDVVA  303
            N +    +PDP+++ AP +V+NIGN+ P  L+ F+E +E+ LG++A K++  +QPGDV  
Sbjct  238  NKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPE  297

Query  304  TAADTKALEDWVGFRPSTAIEAGVAQFAEWYRYFY  338
            T A+   L   ++F+P T+I+ GV +F +WY  +Y
Sbjct  298  TYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

342) Mesau_02518 in NC_019973


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  324 bits (1215),  Expect = 4e-90, Method: Compositional matrix adjust.
 Identities = 171/339 (51%), Positives = 255/339 (76%), Gaps = 6/339 (1%)

Query  1    MKVLVTGAAGFIGYHVARRLLERGDEVVGIDSINDYYDPQIKQARLRLLDEASRKTNAGY  60
            MK+L+TG+AGFIG H+A++L+ +G+ V+G+DSINDYY   +K+ RL+ ++      +  +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG------KENF  54

Query  61   HFIHGDLADRGVVDGCFADHAFDRVIHLAAQAGVRYSLENPRAYVESNIIAYTNMLEACR  120
             F    L + + +   F D+  + V++LAAQAGVRYS+ENPR+Y++SNI+++ N+LE  R
Sbjct  55   TFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSR  114

Query  121  GSRVGHLTYASTSSVYGANTDMPFSEHRPADHPLQFYAATKRANELMAHSYSHLFGLPTT  180
               + +L YAS+SSVYGANT  PFS     DHPL +YAATK++NELMAH+YSHL+ LPTT
Sbjct  115  HFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTT  174

Query  181  GLRFFTVYGPWGRPDMALFLFTRSILAGEPIKLFNNGNHTRDFTYVEDIAEGVIRASDSP  240
            GLRFFTVYGPWGRPDMALF FT++I+ +++I ++N+GN  RDFTYV+DI E++ R    P
Sbjct  175  GLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKP  234

Query  241  AAANPAWDSGRPDPATSSAPWRIFNIGNNNPVKLTAYVEALENALGRKAVIELLPLQAGD  300
            A++N  W ++ PDP++S AP +++NIGNN+PV+L  +VEA+EN LG+ A  + + LQ+GD
Sbjct  235  ASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGD  294

Query  301  VPDTFADTSALQAAVGYRPRTSVTEGVGRFVEWYQDFYS  339
            VP+T+A+   L   ++++P T++ +GV +FV+WY ++Y 
Sbjct  295  VPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

343) lspL in NC_004463


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  324 bits (1215),  Expect = 4e-90, Method: Compositional matrix adjust.
 Identities = 165/330 (50%), Positives = 255/330 (78%), Gaps = 1/330 (0%)

Query  7    VIVTGAAGFIGMHVCERLLARGEQVVGIDALTPYYDPALKRARLATLEHRPGFSFHEIDL  66
            +++TG+AGFIG H+  +L+ +G+ V+G+D++  YY  +LK  RL ++  +  F+F+ + L
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG-KENFTFNKVKL  61

Query  67   ADFAAVTRVFDEVSPDRVVHLAAQPGVRASIDDPITSIRANCDGFVTVLEAGRRHGVAHL  126
             ++  +++VF +  P+ VV+LAAQ+GVR SI++P T I +N  GF+ +LE +R+  + +L
Sbjct  62   ENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNL  121

Query  127  VYASSSSVYGANRTLPYSTEHSVNHPVSLYAASKKANELMAHTYAHVHKLPVTGLRFFTV  186
            +YASSSSVYGAN + P+ST ++++HP+SLYAA+KK+NELMAHTY+H+ +LP TGLRFFTV
Sbjct  122  IYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTV  181

Query  187  YGPWGRPDMAAWLFTRAIFANEPIKIFNNGDMWRDFTYVDDIVEGVIRTLDRPATPNPAW  246
            YGPWGRPDMA   FT+AI  +++I ++N+G+M RDFTYVDDIVE++ R + +PA+PN  W
Sbjct  182  YGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEW  241

Query  247  NAEAPENSTSYAPYRVYNIGNNRSVNLIEFVETLEKIIGKPAIRKLLPMQAGDVLETRAD  306
            ++  P+ ++SYAPY+VYNIGNN +V L+EFVE++E+ +GK A ++ + +Q+GDV ET A+
Sbjct  242  SGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYAN  301

Query  307  ISALQRDVGFAPSTPLAEGLGRFVEWYRKY  336
            +  L RD++F P T + +G+ +FV+WY  Y
Sbjct  302  VDDLFRDIDFKPETTIQDGVNKFVDWYLEY  331

344) A2cp1_0243 in NC_011891


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  323 bits (1212),  Expect = 6e-90, Method: Compositional matrix adjust.
 Identities = 176/332 (54%), Positives = 255/332 (77%), Gaps = 15/332 (4%)

Query  5    LVTGAAGFIGFHLAKALLDRGDVVLGVDSMVPYYDVRLKEARLAQLTGRPGFTFERLDLA  64
            L+TG+AGFIG HLAK L+ +G+ V+GVDS+  YY V LKE RL  + G+  FTF+++ L 
Sbjct  4    LITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKVKLE  62

Query  65   DREATSRLFERGGFGAVVHLAAQPGVRYSLENPHAYVDANVTGFLDVLEGCRRH-PVRHL  123
            + +  S++F       VV+LAAQ+GVRYS+ENP++Y+D+N+ GF+++LE C RH  +++L
Sbjct  63   NYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILE-CSRHFNIQNL  121

Query  124  VYASSSSVYGGNTKVPFAVTDNVDHPVSLYAATKKANELMAYTYSHLFAIPATGLRFFTV  183
            +YASSSSVYG+NT  PF+ +DN+DHP+SLYAATKK+NELMA TYSHL+ +P+TGLRFFTV
Sbjct  122  IYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTV  181

Query  184  YGPWGRPDMAPMLFARAILEGQPIKVFNHGQMRRDFTYVDDIVEGVIRVLDRPPA-----  238
            YGPWGRPDMA   F++AI+++Q+I V+NHG+M RDFTYVDDIVE++ R++ +P++     
Sbjct  182  YGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEW  241

Query  239  -------AGVVPPHRLYNIGNSQPVELLRFIDVMEAALGKKAVRELLPMQPGDVPATFAD  291
                   ++  +P ++YNIGN+ PV L+ F++ +E  LGK A ++ + +QPGDVP T+A+
Sbjct  242  SGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYAN  301

Query  292  VSDLERDVGFRPATSIEEGVRRFVAWYRAYHR  323
            V DL RD++F+P T+I++GV +FV WY  Y +
Sbjct  302  VDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

345) Rvan_0401 in NC_014664


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  323 bits (1212),  Expect = 7e-90, Method: Compositional matrix adjust.
 Identities = 177/339 (53%), Positives = 252/339 (75%), Gaps = 7/339 (2%)

Query  1    MKILVTGTAGFIGFHVARTLLARGADVVGFDVVNAYYDPslkerrlellaeasrapesGS  60
            MKIL+TGTAGFIG H+A+ L+ +G  V+G D +N YY        + L  +  ++    +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYS-------VSLKEDRLKSIGKEN  53

Query  61   FTFIRANLADQAAVNSAFAAHRFDRAIHLAAQAGVRHSLTHPHDYVQSNIVAFTNILEAC  120
            FTF + +L +   ++  F  ++ +  ++LAAQAGVR S+ +P+ Y++SNIV+F NILE  
Sbjct  54   FTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECS  113

Query  121  RHNDTPHLTYASTSSVYGANTAMPFSEHVGVDHPLQFYAATKRANELMAHAYSHLFRLPT  180
            RH +  +L YAS+SSVYGANT+ PFS    +DHPL +YAATK++NELMAH+YSHL+ LPT
Sbjct  114  RHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPT  173

Query  181  TGLRFFTVYGPWGRPDMALFLFTKAILAGEPIKLFNHGHHTRDFTYVEDIAEGVIRASDS  240
            TGLRFFTVYGPWGRPDMALF FTKAI+ +++I ++NHG+  RDFTYV+DI E++ R    
Sbjct  174  TGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKK  233

Query  241  IAEPNPDWSSDRPDPATSNAPFRIFNIGNNQPVRLMEYVAALEEALGRTAQVELLPLQPG  300
             A PN +WS+  PDP++S AP++++NIGNN PVRLME+V A+E+ LG+ A+ + + LQPG
Sbjct  234  PASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPG  293

Query  301  DVPDTFADVSRLERAVGYKPATPVNEGVSRFVAWYRDYY  339
            DVP+T+A+V  L R +++KP T +++GV++FV WY +YY
Sbjct  294  DVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

346) Acife_1710 in NC_015942


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  323 bits (1210),  Expect = 9e-90, Method: Compositional matrix adjust.
 Identities = 167/332 (51%), Positives = 254/332 (77%), Gaps = 4/332 (1%)

Query  4    RVLVTGAAGFIGFHMVRRLLADGWIVSGIDNLNDYYDPGLKRDRLAQLEGHPAFQFQPLD  63
            ++L+TG+AGFIG H+ ++L+ +G  V G+D++NDYY  +LK DRL  + G   F F+ + 
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKVK  60

Query  64   LANREAMQTLFAGPHFDVVINLAAQAGVRHSLEAPHSYVDSNVVGFLNVLEGCRAQGVSH  123
            L N + +  +F + + +VV+NLAAQAGVR S+E P++Y+DSN+VGF+N+LE  R   + +
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  124  LLFASSSSVYGANNRLPYSVHDSVDHPLSLYAATKRAGELMAHSYAHLYGIPSTGLRFFT  183
            L++ASSSSVYGAN   P+S  D++DHPLSLYAATK++ ELMAH+Y+HLY +P+TGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  184  VYGPWGRPDMAYFSFTQKILAGQPIPVFNHGQMQRDFTYIDDIIEGVTRLIPHAPEAQNT  243
            VYGPWGRPDMA F FT+ I+ +Q+I V+NHG+M RDFTY+DDI+E+++RL+  ++ +++ 
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  244  WPE---DPASSAAPFCIHNIGNHTPIALTDFIHTLEGCLGKSAQIEWLPMQDGDVMATYA  300
            W+    DP+SS AP+ + NIGN++P+ L +F++++E  LGK A+ + + +Q GDV  TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  301  DVSPLQQSVGFAPDTPLHKGLQHFVNWYRQYY  332
            +V  L + ++F P+T ++ G++ FV+WY +YY
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

347) lspL in NC_017082


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  323 bits (1210),  Expect = 9e-90, Method: Compositional matrix adjust.
 Identities = 169/332 (51%), Positives = 255/332 (77%), Gaps = 1/332 (0%)

Query  4    VIVTGAAGFIGMHVCERLLARGEQVVGIDAITPYYDPALKRARLATLEHRPGFRFYEIDL  63
            +++TG+AGFIG H+  +L+ +G+ V+G+D+I  YY  +LK  RL ++  +  F F  + L
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG-KENFTFNKVKL  61

Query  64   ADFAAVTRVFDEVAPDRVVHLAAQPGVRASIDDPITSIRANCDGFVTVLEAGRRHGLAHL  123
             ++  +++VF +  P+ VV+LAAQ+GVR SI++P T I +N  GF+ +LE +R+  + +L
Sbjct  62   ENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNL  121

Query  124  VYASSSSVYGANRTLPYSTEHSVNHPVSLYAASKKANELMAHTFAHVHKLPVTGLRFFTV  183
            +YASSSSVYGAN + P+ST ++++HP+SLYAA+KK+NELMAHT++H+ +LP TGLRFFTV
Sbjct  122  IYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTV  181

Query  184  YGPWGRPDMAAWLFTRAIFANEPIKIFNNGDMWRDFTYVDDIVEGVIRTLDRPATPNPAW  243
            YGPWGRPDMA   FT+AI  +++I ++N+G+M RDFTYVDDIVE++ R + +PA+PN  W
Sbjct  182  YGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEW  241

Query  244  NAEAPENSSSYAPYRVYNIGNNRSVNLMEFVETLEKIIGKPAIRKLLPMQAGDVLETRAD  303
            ++  P+ +SSYAPY+VYNIGNN +V LMEFVE++E+ +GK A ++ + +Q+GDV ET A+
Sbjct  242  SGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYAN  301

Query  304  ISALQRDVGFSPSTSIADGLGLFVEWYRQYHR  335
            +  L RD++F P T+I DG+  FV+WY +Y +
Sbjct  302  VDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

348) AnaeK_0232 in NC_011145


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  322 bits (1209),  Expect = 1e-89, Method: Compositional matrix adjust.
 Identities = 175/332 (53%), Positives = 256/332 (78%), Gaps = 15/332 (4%)

Query  5    LVTGAAGFIGFHLAKALLDRGDEVLGVDSMVPYYDVRLKEARLAQLSGRPGFTFERLDLA  64
            L+TG+AGFIG HLAK L+ +G+ V+GVDS+  YY V LKE RL  + G+  FTF+++ L 
Sbjct  4    LITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKVKLE  62

Query  65   DREATSRLFERGGFGAVVHLAAQPGVRYSLENPHAYVDANVTGFLDVLEGCRRH-PVRHL  123
            + +  S++F       VV+LAAQ+GVRYS+ENP++Y+D+N+ GF+++LE C RH  +++L
Sbjct  63   NYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILE-CSRHFNIQNL  121

Query  124  VYASSSSVYGGNTKVPFAVADNVDHPVSLYAATKKANELMAYTYSHLFAIPATGLRFFTV  183
            +YASSSSVYG+NT  PF+ +DN+DHP+SLYAATKK+NELMA TYSHL+ +P+TGLRFFTV
Sbjct  122  IYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTV  181

Query  184  YGPWGRPDMAPMLFARAILEGHPIKVFNHGQMRRDFTYVDDIVEGVIRVLDRPPA-----  238
            YGPWGRPDMA   F++AI+++++I V+NHG+M RDFTYVDDIVE++ R++ +P++     
Sbjct  182  YGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEW  241

Query  239  -------AGVVPPHRLYNIGNSQPVELLRFIEVMEEALGKKAVRELLPMQPGDVPATFAD  291
                   ++  +P ++YNIGN+ PV L+ F+E +E+ LGK A ++ + +QPGDVP T+A+
Sbjct  242  SGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYAN  301

Query  292  VSELERDVGFRPATSIEEGVRRFVAWYRAYHR  323
            V +L RD++F+P T+I++GV +FV WY  Y +
Sbjct  302  VDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

349) Tcr_1509 in NC_007520


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  322 bits (1207),  Expect = 2e-89, Method: Compositional matrix adjust.
 Identities = 196/342 (58%), Positives = 261/342 (77%), Gaps = 16/342 (4%)

Query  1    MKILVTGSAGFIGFYVTQALLKKNHDVIGIDNLNDYYDVDLKKARLSTLNQVCKESGLEK  60
            MKIL+TG+AGFIG  +++ L+K+ H VIG+D++NDYY V LK  RL ++ +         
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK--------E  52

Query  61   NYQFIEMDIANRAQVHDFFKEHRFDRVIHLAAQAGVRYSIENPHAYVDSNLVAFVNILEG  120
            N+ F  + + N  ++   F +++ + V++LAAQAGVRYSIENP++Y+DSN+V+F+NILE 
Sbjct  53   NFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILEC  112

Query  121  CRQQKTAHLIYASSSSVYGMNTKIPFSTEDRVDFPISLYAATKKSNELMAHTYSHLYGIP  180
             R+ +  +LIYASSSSVYG NT  PFST D +D P+SLYAATKKSNELMAHTYSHLY +P
Sbjct  113  SRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLP  172

Query  181  TTGLRFFTVYGPWGRPDMAYFSFTKKILKGEKIDVFNHGNMERDFTYIDDIVEGVVRVMD  240
            TTGLRFFTVYGPWGRPDMA F FTK I++++ IDV+NHGNM RDFTY+DDIVE++ R++ 
Sbjct  173  TTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVK  232

Query  241  HVPEITHSEITAAE-------APYKIYNIGNNQPIKLERFIKAIEMATGKQAVKNNLPMQ  293
              P   + E ++A+       APYK+YNIGNN P++L  F+ AIE   GK+A KN + +Q
Sbjct  233  K-PASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQ  291

Query  294  AGDVPRTYADVGDLMNDVGFKPETTIEDGVNAFVDWYRDFYK  335
            +GDVP TYA+V+DL  D++FKPETTI+DGVN FVDWY ++YK
Sbjct  292  PGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

350) CPS_0592 in NC_003910


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  322 bits (1207),  Expect = 2e-89, Method: Compositional matrix adjust.
 Identities = 183/333 (55%), Positives = 257/333 (78%), Gaps = 0/333 (0%)

Query  1    MKYLVTGAAGFIGSAVVERLCAAGHDVVGIDNINDYYDIALKQARLARIEHASFSFIKMD  60
            MK L+TG+AGFIGS +  +L   GH V+G+D+INDYY ++LK+ RL  I   +F+F K+ 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  61   IADRNVMAELFTAQQFDKVVHLAAQAGVRYSIENPMAYADSNLIGHLNVLEGCRNNQVKH  120
            + + + ++ +F  +Q + VV+LAAQAGVRYSIENP +Y DSN++G +N+LE  R+ ++++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  121  LIYASSSSVYGLNNKVPFSTKDTVDHPVSLYAATKKSNELMAHSYSHLYNIPTTGLRFFT  180
            LIYASSSSVYG N   PFST D +DHP+SLYAATKKSNELMAH+YSHLYN+PTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  181  VYGSWGRPDMAPYIFTKKILngdtidinnngdMWRDFTHVDDIVEGVIRIADVIPERDAE  240
            VYG+WGRPDMA + FTK I+N+++ID+ N+G+M RDFT VDDIVE++ R+    +  + E
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  241  WKVESGSPATSSAPYSVYNIGHGSPISLMDFVKAIEDELGIEAKKNFREMQPGDVYQTYA  300
            W      P++S APY VYNIG+ SP+ LM+FV AIE+ LG EA+KN+ ++QPGDV +TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  301  DTQDLFKATNYVPKISVKEGVAELVVWFKDFYK  333
            + +DLF+  ++ P  ++++GV  +V W+ ++YK
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

351) KKY_3138 in NC_016078


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  321 bits (1205),  Expect = 2e-89, Method: Compositional matrix adjust.
 Identities = 182/338 (54%), Positives = 260/338 (77%), Gaps = 6/338 (1%)

Query  1    MKILVTGSAGFIGYHVARRLIERGDSVVGFDNLNDYYDPALKEARLARLDELGATQGADY  60
            MKIL+TG+AGFIG H+A++LI +G+ V+G D++NDYY  +LKE RL  ++        ++
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK------ENF  54

Query  61   RFIRADLADQGAVDAAFGDHGFDRVIHLAAQAGVRYSLEDPRSYVASNLLGFTNILEACR  120
             F +  L + + +   F D+  + V++LAAQAGVRYS+E+PR+Y+ SN++GF NILE  R
Sbjct  55   TFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSR  114

Query  121  HNGAGHLTYASTSSVYGANTKMPFSEHDGADHPLQFYAATKRANELMAHSYSHLFALPTT  180
            H    +L YAS+SSVYGANT  PFS  D  DHPL +YAATK++NELMAH+YSHL+ LPTT
Sbjct  115  HFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTT  174

Query  181  GLRFFTVYGPWGRPDMALFKFTRAILAGEPIDVFNNGNHSRDFTYIDDIVEGVIRASdtp  240
            GLRFFTVYGPWGRPDMALFKFT+AI+ +++IDV+N+GN  RDFTY+DDIVE++ R    P
Sbjct  175  GLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKP  234

Query  241  atpdpdwdaaapdpaGSNAPFRIFNIGNSEPVKLADYIDALEEALGKRAIRNFLPLQPGD  300
            A+P+ +W +A PDP++S AP++++NIGN+ PV+L ++++A+E+ LGK A +N++ LQPGD
Sbjct  235  ASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGD  294

Query  301  VPDTYSDTTLLTRATGYRPSTPVREGVARFVAWYRDHY  338
            VP+TY++   L R  +++P T +++GV +FV WY + Y
Sbjct  295  VPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

352) Dtpsy_0401 in NC_011992


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  321 bits (1205),  Expect = 2e-89, Method: Compositional matrix adjust.
 Identities = 170/330 (52%), Positives = 259/330 (79%), Gaps = 1/330 (0%)

Query  5    LVTGCAGFIGMHCAQRLLERGERVVGIDNLNAYYDVGLKHARLGRLHGQGDFTFEQIDVA  64
            L+TG AGFIG H A++L+ +G+ V+G+D++N YY V+LK+ RL  + G+ +FTF+++ + 
Sbjct  4    LITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKVKLE  62

Query  65   DRDAMHALFARVRPHRVLHLAAQAGVRYSIDQPDDYTDSNLLGFGNILQGCRAQQVEHLV  124
            + D +  +F   +P+ V++LAAQAGVRYSI++P  Y DSN++GF NIL+  R  ++++L+
Sbjct  63   NYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNLI  122

Query  125  FASSSSVYGGNAKLPFSERDAVDHPVSYYAATKKANEVMAHAYAHLYGIPTTGLRFFTVY  184
            +ASSSSVYG+N+  PFS  D +DHP+S YAATKK+NE+MAH+Y+HLY +PTTGLRFFTVY
Sbjct  123  YASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTVY  182

Query  185  GPWGRPDMALFKFTRAMLAGETIDVYGEGQLVRDFTYIDDIVEGVLRVLDKPATPDAAFD  244
            GPWGRPDMALFKFT+A++ +++IDVY +G+++RDFTY+DDIVE++ R++ KPA+P+    
Sbjct  183  GPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEWS  242

Query  245  PLSPSPGTGLAPYRIFNIGNSAPTLLMDYIHALEEALGMVALKRMLPLQPGDMHSTAADM  304
               P PG++ APY+++NIGN++P  LM++++A+E+ LG  A K  + LQPGD+  T A++
Sbjct  243  GADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYANV  302

Query  305  AALASWVGFAPHTPVRDGVARFVHWYKDFY  334
              L   ++F P+T ++DGV +FV+WY ++Y
Sbjct  303  DDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

353) Chro_0096 in NC_019695


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  321 bits (1205),  Expect = 3e-89, Method: Compositional matrix adjust.
 Identities = 192/334 (58%), Positives = 265/334 (80%), Gaps = 2/334 (0%)

Query  1    MHVLVTGVAGFIGYHLAQRLLQEGIGVYGIDNLNNYYDVKLKHDRLAQLQPHPGFAFQKl  60
            M +L+TG AGFIG HLA++L+++G  V G+D++N+YY V LK+DRL  +     F+F+K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  61   dlaerdrllelFQYNKFDYVVNLAAQAGVRYSLQNPFAYSDSNLSGFVNLLEGCRHSQVK  120
             L + D L  +F  ++ + VVNLAAQAGVRYS++NP +Y DSN+ GF+N+LE  RH +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVFASSSSVYGANTKIPFSVSDRVDRPVSLYAATKKANELIAHVYSHLYNLPTTGLRFF  180
            +L++ASSSSVYGANT  PFS SD +D+P+SLYAATKK+NEL+AH YSHLYNLPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMAYFKFVQAIEAGKPIEVYNYGKMKRDFTYIDDVVEGVMRVMLRPPQMCS  240
            TVYGPWGRPDMA FKF +AI  +++I+VYN G+M RDFTY+DD+VE++ R++ +P+    
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  QPNGNSAIPENQ-APYKIYNIGNNSPVELNEFIQTIETALGKTARTQMLPMQPGDVPCTY  299
            + +G  + P +  APYK+YNIGNNSPV L EF+++IE  LGK AR + + +QPGDVP TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  300  ADVDDLIHDVGFKPTTPLSEGIQRFVDWYKLYYK  333
            A+VDDL++D++FKP T + +G+++FVDWY  YYK
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

354) Pedsa_0830 in NC_015177


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  321 bits (1205),  Expect = 3e-89, Method: Compositional matrix adjust.
 Identities = 183/349 (53%), Positives = 260/349 (75%), Gaps = 17/349 (4%)

Query  1    MKILVTGSAGFIGFHLVNSLLQRGDEVVGIDNLNDYYDVNLKYARLAQAGVYQETITYKK  60
            MKIL+TG+AGFIG HL + L+++G+ V+G+D++NDYY V+LK  RL   G          
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK---------  51

Query  61   EIRSSLFENYIFVQLDITDEKGLSALFKKHKFDAVCNLAAQAGVRYSLINPSTYIDTNIK  120
                   EN+ F ++ + +  +LS +F  ++ + V NLAAQAGVRYS+ NP TYID+NI 
Sbjct  52   -------ENFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIV  104

Query  121  GFLNILECSRHTNMKNLVYASSSSVYGLNKKMPFNVKDNVDHPVSLYAASKKSNELMAHA  180
            GF+NILECSRH N++NL+YASSSSVYG N   PF+  DN+DHP+SLYAA+KKSNELMAH+
Sbjct  105  GFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHT  164

Query  181  YSHLFNIATTGLRFFTVYGPWGRPDMAGFLFAKAISEGKSIQIFNNGNMKRDFTYIDDII  240
            YSHL+N++TTGLRFFTVYGPWGRPDMA F F+KAI ++++I+++N+GNM RDFTY+DDI+
Sbjct  165  YSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIV  224

Query  241  AGVITVIDNPNYNGTESWSGLTPDPSCSKAPYRVFNIGRGNSIDLMSFINEIEGNLGTRA  300
             ++  ++ +P  +    WSG  PDP+ S APY+V+NIG  +++ LM F++ IE +LG  A
Sbjct  225  EAISRLVKKPA-SPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEA  283

Query  301  QKTYLPLQDGDVVCTWSDVKNLKKEFDYEPKVSVKEGVKRFTDWYKSYY  349
            +K Y+ LQ GDV  T ++V +L +++D+ P  ++++GV++F DWY  YY
Sbjct  284  RKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

355) Sdel_1792 in NC_013512


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  321 bits (1203),  Expect = 4e-89, Method: Compositional matrix adjust.
 Identities = 196/348 (57%), Positives = 273/348 (79%), Gaps = 16/348 (4%)

Query  1    MKILVTGTAGFIGYHLAKKLLERGDEVVGVDNINDYYDVNLKYARLAELGIHKNEVKDNK  60
            MKIL+TGTAGFIG HLAKKL+ +G+ V+GVD+INDYY V+LK  RL             K
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRL-------------K  47

Query  61   LLGSTTYPKHQFIKVNLDDSETINKLFESEKFDAVCNLAAQAGVRYSLENPHAYIQSNVV  120
             +G   +    F KV+L++ + ++K+F  E+ + V NLAAQAGVRYS+ENP++YI+SN+V
Sbjct  48   SIGKENFT---FNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIV  104

Query  121  GFLNILEACRNYGVKNLCYASSSSVYGLNKSQPFKTSDHTDHPISLYAATKKSNEMMAHT  180
            GF+NILE  R++ ++NL YASSSSVYG N S+PF TSD+ DHP+SLYAATKKSNE+MAHT
Sbjct  105  GFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHT  164

Query  181  YAHLYNISCTGLRFFTVYGEMGRPDMAPMLFADAIFNDRPIKVFNHGNMSRDFTYigdiv  240
            Y+HLYN++ TGLRFFTVYG  GRPDMA   F+ AI ND++I V+NHGNM RDFTY++DIV
Sbjct  165  YSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIV  224

Query  241  dgivkvidNPAKPSDKFDANNPDSSISNAPYRIYNIGNNSPVQLLDFIKTLEIAIGKEAV  300
            ++I +++ +PA P+    + +PD++ S APY++YNIGNNSPV+L++F+ ++E  +GKEA 
Sbjct  225  EAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEAR  284

Query  301  QNFMDMQDGDVVSTYADVSDLINDFGYKPDTSLEVGIERFVKWYREFY  348
            +N+MD+Q GDV  TYA+V DL+ D+++KP+T+++ G+++FV WY E+Y
Sbjct  285  KNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

356) P700755_002082 in NC_018721


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  321 bits (1203),  Expect = 4e-89, Method: Compositional matrix adjust.
 Identities = 194/349 (56%), Positives = 263/349 (76%), Gaps = 29/349 (8%)

Query  3    KILVTGAAGFIGFHLCKTLIKENYLIIGLDNINDYYDVNLKFDRLKELGVEREKAAIFNK  62
            KIL+TG+AGFIG HL K LIK+   +IG+D+INDYY V+LK DRLK +G E         
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE---------  52

Query  63   ETSSNSFNNFKFIRLNLEDTDAISKLFEKEKFDEVVNLAAQAGVRYSIQNPRAYVQSNLV  122
                    NF F +++LE+ D +SK+F  E+ + VVNLAAQAGVRYSI+NPR+Y++SN+V
Sbjct  53   --------NFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIV  104

Query  123  GFLNILEGCRDTKVKHLLYASSSSVYGENKKTPFSVPDNVDHPISLYAATKKSNELMAHT  182
            GF+NILE  R+ ++++L+YASSSSVYG N   PFS +DN+DHP+SLYAATKKSNELMAHT
Sbjct  105  GFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHT  164

Query  183  YSHLYDIPTTGLRFFTVYGPWGRPDMALFLFTKAIIEGSSINVFNKGKMSRDFTYIDDII  242
            YSHLY++PTTGLRFFTVYGPWGRPDMALF FTKAI+++ +I+V+N G+M RDFTY+DDI+
Sbjct  165  YSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIV  224

Query  243  SGIEISLSLPPSKDKQ-----------QVPYRIFNIGKGSPETLEDFISCIEKSLDKKAH  291
             +I   +  P+S +K+             PY+++NIG+ SP  L +F+  IE+ L+K A+
Sbjct  225  EAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEAR  284

Query  292  KKMLPIQPGDVPKTWADISDL-KGMGYKSSTPIEKGVDKFVKWYKEYYK  339
            K+ + +QPGDVP T A++ DL +++++K+ T I+ GV+KFV WY EYYK
Sbjct  285  KNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

357) Murru_2323 in NC_015945


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  320 bits (1202),  Expect = 4e-89, Method: Compositional matrix adjust.
 Identities = 192/350 (55%), Positives = 259/350 (74%), Gaps = 28/350 (8%)

Query  1    MNILVTGAAGFIGYHLCELLIKNGHTVIGLDNINDYYDVGLKYARIQQLGIPRAKAEVDG  60
            M+IL+TG+AGFIG HL   LIK+GH VIG+D+INDYY V+LK  R++ +G          
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG----------  50

Query  61   QISSSTLHGEQMKFIKLDLADRQGLDRLFQENTFDVVCNLGAQAGVRYSLENPDAYIQSN  120
                     E+  F K+ L + ++L ++F ++  +VV NL+AQAGVRYS+ENP +YI+SN
Sbjct  51   --------KENFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSN  102

Query  121  VVGFANLLECCRHGNVKHLVYASSSSVYGLNEKIPFSTEDTVDRPISIYAATKKSNELMA  180
            +VGF N+LEC RH N+++L+YASSSSVYG N   PFST D +D+P+S+YAATKKSNELMA
Sbjct  103  IVGFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMA  162

Query  181  HTYSHLYQLPTTGLRFFTVYGPWGRPDMALFLFVDAIKKGKPINVFNYGNMARDFTYVDD  240
            HTYSHLY+LPTTGLRFFTVYGPWGRPDMALF F  AI ++++I+V+N GNM RDFTYVDD
Sbjct  163  HTYSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDD  222

Query  241  IVGGMSKIIETPVAESKRKDEL----------YKIYNIGNNKQVKLTDFIDAIESSLDTP  290
            IV ++S+++  P + +K               YK+YNIGNN  V+L +F++AIE+ L+  
Sbjct  223  IVEAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKE  282

Query  291  AKRNLMPIQPGDVESTWADVNDLIRDYDYKPDTPIEKGVKEFVDWYNDFY  340
            A++N M +QPGDV  T A+V+DL+RD D+KP+T I+ GV+ FVDWY ++Y
Sbjct  283  ARKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

358) SVI_1494 in NC_014012


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  320 bits (1201),  Expect = 5e-89, Method: Compositional matrix adjust.
 Identities = 188/333 (57%), Positives = 257/333 (78%), Gaps = 0/333 (0%)

Query  1    MKYLVTGVAGFIGSCVVERLTEQGHKVIGIDNVNDYYDTNLKNSRLKRAEHKNFKFIKND  60
            MK L+TG AGFIGS +  +L  QGH VIG+D++NDYY  +LK+ RLK     NF F K  
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  61   LADRAAMATLFTEHQFDRVIHLAAQAGVRYSIENPMAYADSNLIGHLNILEGCRNTKVKH  120
            L +   ++ +F ++Q + V++LAAQAGVRYSIENP +Y DSN++G +NILE  R+ ++++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  121  LVYASSSSVYGLNSKVPFSTSDTVDHPISLYAATKKSNELMAHSYSHLYDIPTTGLRFFT  180
            L+YASSSSVYG N+  PFSTSD +DHP+SLYAATKKSNELMAH+YSHLY++PTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  181  VYGPWGRPDMAPYIFTKKILSGETIDINNNGDMWRDFTYIDDIVEGVIRIVDVIPTRDDT  240
            VYGPWGRPDMA + FTK I+++++ID+ N+G+M RDFTY+DDIVE++ R+V   ++ +  
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  241  WKVEDGspasssapysiyniGHGSPINLMKFIEAIETELGIEAKKNFRGMQAGDVYQTYA  300
            W   D  P+SS APY +YNIG+ SP+ LM F+EAIE  LG EA+KN+ ++Q+GDV +TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  301  DTQDLFEVTGYKPKVGVAEGVAKLVSWYKDFYK  333
            + +DLF   ++KP   + +GV K+V WY ++YK
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

359) Glaag_3319 in NC_015497


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  320 bits (1200),  Expect = 6e-89, Method: Compositional matrix adjust.
 Identities = 196/332 (60%), Positives = 251/332 (76%), Gaps = 7/332 (2%)

Query  1    MKYLVTGAAGFIGNYVAEKLCNQGHEVIGLDNLNDYYDPELKLARLKRIEHFDNFTFVKA  60
            MK L+TG+AGFIG+ +A KL +QGH VIG+D++NDYY   LK  RLK I   +NFTF K 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DISDRDTIATLFSQQKFDRVIHLAAQAGVRYSIENPMAYIDSNLTGMATILEGCRHNNVE  120
             + + D ++ +F +++ + V++LAAQAGVRYSIENP +YIDSN+ G   ILE  RH N++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGANKKIPFAESDRVDYPVSLYAATKKSNELMAHTYSHLYALPTTGLRFF  180
            +L+YASSSSVYGAN   PF+ SD +D P+SLYAATKKSNELMAHTYSHLY LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMAPFLFTDAVANDRPIKVFNDGKMQRDFTYIDDIVEGIVRIQDVIPKPVE  240
            TVYGPWGRPDMA F FT A+ ND++I V+N+G+M RDFTY+DDIVE+I R+    + P  
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  Q----APTESSPY--YKLYNIGNNSPVELEAFITCIENALGKKAVKNYMPMQDGDVVRTF  294
            +     P  +S+Y  YK+YNIGNNSPV L  F+  IEN LGK A KNYM +Q GDV  T+
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  295  ADITNLESEIGFKPKTDLQDGINHFVDWFKDY  326
            A++ +L  +I+FKP T +QDG+N FVDW+ +Y
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEY  331

360) AHA_0962 in NC_008570


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  320 bits (1199),  Expect = 7e-89, Method: Compositional matrix adjust.
 Identities = 174/334 (53%), Positives = 252/334 (76%), Gaps = 1/334 (0%)

Query  1    MKYLVTGAAGFIGFHVARQLCEAGHQVVGLDNLNDYYEVSLKEARLAMLTPFPHFRFVQG  60
            MK L+TG+AGFIG H+A++L   GH V+G+D++NDYY VSLKE RL  +    +F F + 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   ELADQAGMAALFAEGRFERVIHLGAQAGVRHSLENPFAYSESNLTGMLTVLEGCRQHGIQ  120
             L +  +++ +F + + E V++L+AQAGVR S+ENP +Y +SN+ G + +LE  R+  IQ
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLIYASSSSVYGMGEQLPFSADQQVDHPVSLYAATKKSGELMAHAYSALYGLPTTGLRFF  180
            +LIYASSSSVYG     PFS+ +++DHP+SLYAATKKS ELMAH+YS LY LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMAIAKFTRAILAGEPIDVYNQGDLSRDFTFIDDIVEGILAVAELPPRPNP  240
            TVYGPWGRPDMA+ KFT+AI+ +++IDVYN+G++ RDFT++DDIVE+I  +   P+ PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  HWHAGEQSPAESAAPYRILNIGHGQPVRLLDFIEALEQALDKPAIKRMLPMQAGDMHATW  300
            +W +++  P+ S APY++ NIG+  PVRL++F+EA+E+ L+K A K  + +Q+GD+  T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADSEPLHTLTGLRPATSIKEGVAAFVRWYLDYYQ  334
            A+ + L    +++P T+I++GV  FV WYL+YY+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

361) R2APBS1_1046 in NC_020541


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  319 bits (1197),  Expect = 1e-88, Method: Compositional matrix adjust.
 Identities = 183/334 (55%), Positives = 257/334 (77%), Gaps = 1/334 (0%)

Query  1    MRILVTGTAGFIGaalaqrllarGDVVYGVDNHNTYYDPALKEARLARFIDHPNYTHQRA  60
            M+IL+TGTAGFIG+ LA++L+ +G+ V GVD+ N YY  +LKE RL + I+  N+T ++ 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRL-KSIGKENFTFNKV  59

Query  61   DLADAEALNHAFAACAPQRVVNLAAQAGVRYSLQNPQAYVASNLVGFVNMLEACRHGSVE  120
             L + + L+  F    P+ VVNLAAQAGVRYS++NP++Y+ SN+VGF+N+LE  RH +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGANRKLPFAVEDAVDHPVSLYAASKKANELMAHTYSHLYGLPTTGLRFF  180
            +L+YASSSSVYGAN   PF+  D +DHP+SLYAA+KK+NELMAHTYSHLY LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMSPMLFADRISRGEPIDVFNFGHHSRDFTYIDDIVEGVIRTLDHPAEPDP  240
            TVYGPWGRPDM+   F+  I  +++IDV+N G+  RDFTY+DDIVE++ R +  PA P+ 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  AYDAERPNPGSSNAPYRVYNLGNDQPVQLLRFIELLEQNFGRRVEKRLLPMQPGDVPDTW  300
               +  P+PGSS APY+VYN+GN+ PV+L+ F+E +E+++G+   K  + +QPGDVP+T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADVTALRRDVGYAPNTSIEDGVTRFVAWYREYHR  334
            A+V  L RD+++ P+T+I+DGV +FV WY EY +
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

362) AHML_05150 in NC_021290


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  319 bits (1195),  Expect = 1e-88, Method: Compositional matrix adjust.
 Identities = 173/334 (52%), Positives = 251/334 (76%), Gaps = 1/334 (0%)

Query  1    MKYLVTGAAGFIGFHVARRLCEAGHQVVGLDNLNDYYEVSLKEARLAMLTPFPHFRFVQG  60
            MK L+TG+AGFIG H+A++L   GH V+G+D++NDYY VSLKE RL  +    +F F + 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   ELADQAGMATLFAEGQFERVIHLGAQAGVRHSLENPFAYSESNLTGMLTVLEGCRQHGIR  120
             L +  +++ +F + Q E V++L+AQAGVR S+ENP +Y +SN+ G + +LE  R+  I+
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLIYASSSSVYGMGEQLPFSADQQVDHPVSLYAATKKSGELMAHAYSALYGLPTTGLRFF  180
            +LIYASSSSVYG     PFS+ +++DHP+SLYAATKKS ELMAH+YS LY LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMAIAKFTRAILAGEPIDVYNQGDLSRDFTFIDDIVEGILAVAELPPRPNP  240
            TVYGPWGRPDMA+ KFT+AI+ +++IDVYN+G++ RDFT++DDIVE+I  +   P+ PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  HWHAGEQSPAESAAPYRILNIGHGQPGRLLDFIEALEQALDKPAIKRMLPMQAGDMHATW  300
            +W +++  P+ S APY++ NIG+  P RL++F+EA+E+ L+K A K  + +Q+GD+  T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADSEPLHTLTGLRPATSIKEGVAAFVRWYLDYYQ  334
            A+ + L    +++P T+I++GV  FV WYL+YY+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

363) Acife_0994 in NC_015942


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  319 bits (1195),  Expect = 1e-88, Method: Compositional matrix adjust.
 Identities = 164/333 (50%), Positives = 254/333 (77%), Gaps = 2/333 (0%)

Query  4    RILVTGAGGFIGYHLCRRLLTEGWIVHGLDNLNAYYDPALKRDRLAHLENHSDFQFHTVD  63
            +IL+TG++GFIG HL ++L+ +G  V G+D++N YY  +LK DRL  + ++ +F F+ V 
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKVK  60

Query  64   LADRAAMTSLFAGPHFDVVVNLAAQAGVRHSLQDPAAYVDSNLVGFANVLEGCRAQAVDH  123
            L +   ++ +F + + +VVVNLAAQAGVR S+++P +Y+DSN+VGF N+LE  R   +++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  124  LLFASSSSVYGANARLPYSVHDGVDHPLSLYAASKRAGELMAHSYAHLFGIPCTGLRFFT  183
            L++ASSSSVYGAN+  P+S  D +DHPLSLYAA+K++ ELMAH+Y+HL+ +P TGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  184  VYGPWGRPDMAYFRFTRQILAGEPIPVFNHGQMRRDFTYIDDIIEGVVRLLDCVPRPVPA  243
            VYGPWGRPDMA F+FT+ I+ +++I V+NHG+M RDFTY+DDI+E++ RL+   + P   
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  244  -TTEQPDPSTSDAPFRLYNIGNHTPVALLDFIAILEDLLARKADIEWLPMQAGDVIATYA  302
             +  +PDP++S AP+++YNIGN++PV L++F+  +E+ L++ A  + + +Q+GDV  TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  303  DVGELQEAVGFSPATPLRDGLARFVAWYRNYYD  335
            +V++L   ++F P T ++DG+ +FV WY +YY 
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

364) FB2170_10021 in NC_014472


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  319 bits (1195),  Expect = 2e-88, Method: Compositional matrix adjust.
 Identities = 193/350 (56%), Positives = 261/350 (75%), Gaps = 27/350 (7%)

Query  1    MRVLITGAAGFIGFYLSKALVANGHYVVGLDNINDYYDVNLKYARLKELGISRTSSEPYN  60
            M++LITG+AGFIG  L+K L+ +GHYV+G+D+INDYY V+LK  RLK +G          
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE--------  52

Query  61   NMTASTILKDFYFVRLGLEDRENLPNLFKKECFDVVCNLAAQAGVRYSLENPEAYMDSNM  120
                     +F F ++ LE+ ++L+++F  E  +VV NLAAQAGVRYS+ENP +Y+DSN+
Sbjct  53   ---------NFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNI  103

Query  121  VGFLNILENCRHNDIKHLVYASSSSVYGLNEKVPFETTDAVDNPISLYAATKKSNELMAH  180
            VGF+NILE  RH +I++L+YASSSSVYG N   PF T+D +D+P+SLYAATKKSNELMAH
Sbjct  104  VGFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAH  163

Query  181  TYSHLYGFPTTGLRFFTVYGPWGRPDMAMFLFTDAIVNGKPIKVFNHGKMERDFTYIDDI  240
            TYSHLY +PTTGLRFFTVYGPWGRPDMA+F FT AIVN+++I V+NHG+M RDFTY+DDI
Sbjct  164  TYSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDI  223

Query  241  VQGVTLII----------EGDTSNRKTISDLYKIYNIGNNKSVRLMDFIEEIEQSLGINA  290
            V++++ ++           G  ++  +    YK+YNIGNN +VRLM+F+E IE+ LG +A
Sbjct  224  VEAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEA  283

Query  291  KKEMLPMQPGDVGKTWANVEDLVRDYNYSPNTPIEKGVKEFVIWYKNYHK  340
            +K+ + +QPGDV  T ANV+DL RD ++ P+T I+ GV+ FV WY +Y K
Sbjct  284  RKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

365) PsycPRwf_0982 in NC_009524


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  319 bits (1195),  Expect = 2e-88, Method: Compositional matrix adjust.
 Identities = 184/357 (52%), Positives = 256/357 (72%), Gaps = 23/357 (6%)

Query  1    MKILVTGAAGFIGFHVCQKLLARGDQIIGVDNLNDYYDVSLKMARLSELGVTLDAETMTA  60
            MKIL+TG+AGFIG H+ +KL+ +G+ +IGVD++NDYY VSLK  RL  +G          
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG----------  50

Query  61   DHSSRDSTSSANFEFIKLDIADRAAMESLFAEHQFDAVCHLAAQAGVRYSIENPHVYVET  120
                       NF F K+ + +   +  +F ++Q + V +LAAQAGVRYSIENP+ Y+++
Sbjct  51   ---------KENFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDS  101

Query  121  NVVGFLNILEGCRQHNVDNLCFASSSSVYGLNQSQPFKTSDHTDHPVSLYAATKKSNEMM  180
            N+VGF+NILE  R+ N++NL +ASSSSVYG N S+PF TSD+ DHP+SLYAATKKSNE+M
Sbjct  102  NIVGFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELM  161

Query  181  AHTYAHLFGIRCTGLRFFTVYGPWGRPDMAPMLFADAISNNRPIKVFNHGDMSRDFTYVG  240
            AHTY+HL+ +  TGLRFFTVYGPWGRPDMA   F+ AI N+++I V+NHG+M RDFTYV+
Sbjct  162  AHTYSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVD  221

Query  241  DIAEGILAILDTPAGSKDVGAPTFDPRHPSPETSSAPYRLYNIGNNSPVNLMVFIRTLEA  300
            DI E+I  ++  PA+++          +P P +S APY++YNIGNNSPV LM F+ ++E 
Sbjct  222  DIVEAISRLVKKPASPNK----EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIEN  277

Query  301  EFGTEAQKIMMDMQPGDVASTYADSSSLTQLTGFTPNTELAEGIKHFANWYRDYFKK  357
             +G EA+K  MD+QPGDV+ TYA+   L +  +F P+T + +G++ F +WY +Y+KK
Sbjct  278  KLGKEARKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

366) Selin_2201 in NC_014836


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  318 bits (1194),  Expect = 2e-88, Method: Compositional matrix adjust.
 Identities = 181/339 (54%), Positives = 264/339 (78%), Gaps = 6/339 (1%)

Query  7    MHHLVTGTAGFIGFHTAKKLLERGDSVVGFDSVNDYYDVDIKEARLRILEQTARETGSQY  66
            M  L+TGTAGFIG H AKKL+ +G+ V+G DS+NDYY V +KE RL+ + +       ++
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK------ENF  54

Query  67   AFVRANLADQEAVKQCFAEHDFGRVIHLAAQAGVRYSLMNPHAYVESNIVATTNILEACR  126
            +F + +L + + + + F +++   V++LAAQAGVRYS+ NP++Y++SNIV+  NILE  R
Sbjct  55   TFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSR  114

Query  127  HARTPHLTYASTSSVYGANTRMPFSEHRGVDHPLQFYAATKRANELMAHSYSHLYGLPTT  186
            H    +L YAS+SSVYGANT  PFS    +DHPL +YAATK++NELMAH+YSHLY LPTT
Sbjct  115  HFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTT  174

Query  187  GLRFFTVYGPWGRPDMALFLFTKNILAGEPIQVFNHGNHTRDFTFVDDIVEGVIRASDQI  246
            GLRFFTVYGPWGRPDMALF FTK I+ +++I+V+NHGN  RDFT+VDDIVE++ R   + 
Sbjct  175  GLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKP  234

Query  247  aapdpdwdsdnpdpaTSCAPFRIFNIGNNSPVKLGEYIAAIEDAVGKKAIKEMLPLQAGD  306
            A+P+ +W + +PDP++S AP++++NIGNNSPV+L E++ AIE+ +GK A K+ + LQ+GD
Sbjct  235  ASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGD  294

Query  307  VPDTFADVSELEKSVQYRPATPVREGVQRFVQWYREFYR  345
            VP+T+A+V +L + ++++P T +++GV++FV+WY E+Y+
Sbjct  295  VPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

367) PP4_28840 in NC_021505


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  318 bits (1191),  Expect = 3e-88, Method: Compositional matrix adjust.
 Identities = 178/334 (54%), Positives = 257/334 (77%), Gaps = 12/334 (3%)

Query  1    MPVLITGVAGFIGFHVARRLCEAGIEVLGIDNLNAYYSVELKRARLQQLSGFANFRFQPL  60
            M +LITG AGFIG H+A++L   G  V+G+D++N YYSV LK  RL+ ++   NF F+ +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DIANSADLQQLFTGQAFSEVIHLAAQAGVRYSLDNPGAYGQANLVGFLNMLEACRQHPPR  120
             + N  DL ++F ++    V++LAAQAGVRYS++NP +Y ++N+VGF+N+LE  R+   +
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLIYASSSSVYGANAKLPFSVDDTVEQPVSLYAASKRANELMAHSYAHLYRLPTTGLRFF  180
            +LIYASSSSVYGAN+  PFS  D +++P+SLYAA+K++NELMAH+Y+HLY LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTRAMLEGRPIEIYNNGLMGRDFTYIDDIVESILRLRLKP-----  235
            TVYGPWGRPDMALFKFT+A++++++I++YN+G M RDFTY+DDIVE+I RL  KP     
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  236  ------PQPAHGQPPCQLFNIGRGQPVRLLHFVECLEDALGIKAQRDYLPLQAGDVLETW  289
                  P+P+ + +P +++NIG   PVRL++FVE +E+ LG  A+++Y+ LQ+GDV ET 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  290  ADVGSLARWIDFIPGTSLEHGVNAFVGWYRDFYR  323
            A+V+ L R IDF P T++++GVN FV+WY ++Y+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

368) Mlg_2678 in NC_008340


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  318 bits (1191),  Expect = 3e-88, Method: Compositional matrix adjust.
 Identities = 173/332 (53%), Positives = 247/332 (75%), Gaps = 1/332 (0%)

Query  1    MKHLITGAAGFIGYHTAQALLARGDEVVGLDNLNDYYDPRLKRARLARLEGQPGFRFVKL  60
            MK LITG+AGFIG H A+ L+ +G+ V+G+D++NDYY   LK  RL  + G+  F F K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  61   DLADRAGMAELFRAERFQRVIHLAAQAGVRHSLTDPYSYVDSNVSGTLNVLEGCRYNDVE  120
             L +  +++ +F  E+ + V++LAAQAGVR S+ +P +Y+DSN+ G +N+LE  R  +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLTYASTSSVYGAHEDMPFTEHRHTDHPLAIYAATKKATEHMAHSYAHLYGLPCTGLRFF  180
            +L YAS+SSVYGA+   PF+   + DHPL++YAATKK+ E MAH+Y+HLY LP TGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFLFTRKILAGEPIDIYNNGDHGRDFTYVDDIVDGVIRASDRVARRNP  240
            TVYGPWGRPDMALF FT+ I+ +++ID+YN+G+  RDFTYVDDIV+++ R   + A  N 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  EWDPKRPDTATSNAPWRIYNIGANRPVRLMHYVEVLEEALGRKAEKNFLPLQPGDVPETH  300
            EW    PD ++S AP ++YNIG N PVRLM++VE +E+ LG+ A KN++ LQPGDVPET 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADVSALAQDTGYSPKVSVEEGIRRFVDWYREY  332
            A+V  L +D ++ P  ++++G+ +FVDWY EY
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEY  331

369) Niako_7109 in NC_016609


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  318 bits (1192),  Expect = 3e-88, Method: Compositional matrix adjust.
 Identities = 184/348 (53%), Positives = 269/348 (78%), Gaps = 16/348 (4%)

Query  1    MNILITGSAGFIGYFLTRKLLERGEHVVGLDNINEYYDTNLKYARLAENGINKNSIEWNR  60
            M+ILITG+AGFIG  L++KL+ +G+ V+G+D+IN+YY  +LK  RL  ++I K+      
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRL--KSIGKE------  52

Query  61   MLSSSKYGNYRFIKLSLEDKQMLMGLFRKEKFDMVVHLAAQAGVRYSINNPDVCIQSNVV  120
                    N+ F K+ LE+ + L  +F  E+ ++VV+LAAQAGVRYSI+NP   I+SN+V
Sbjct  53   --------NFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIV  104

Query  121  GFLNMLEACRHHAIQHLVYASSSSVYGLNEQMPFSVNQSIGHPISLYAATKKSNELMAHT  180
            GF+N+LE  RH  IQ+L+YASSSSVYG N   PFS +++I+HP+SLYAATKKSNELMAHT
Sbjct  105  GFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHT  164

Query  181  YSYLFNLPTTGLRFFTVYGPWGRPDMAYFLFADAIMKGQPITVFNEGKMKRDFTYIDDIV  240
            YS L+NLPTTGLRFFTVYGPWGRPDMA F F+ AI+++Q+I V+N+G+M RDFTY+DDIV
Sbjct  165  YSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIV  224

Query  241  EGIVRVLDKPATPDKEWNALYADPSGSIAPYRLYNIGNDNPVELMDFIREIEKNCDKHAK  300
            E+I R++ KPA+P+KEW++  +DP++S APY++YNIGN++PV LM+F+  IE++ +K+A+
Sbjct  225  EAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEAR  284

Query  301  IEMKTGEKCEVQTTWADINELAANFQYRPSTSLQTGIKEFIRWYREFY  348
             +    +  +V  T A++++L  +++++P T++Q G++ F+ WY E+Y
Sbjct  285  KNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

370) Ajs_0409 in NC_008782


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  318 bits (1192),  Expect = 3e-88, Method: Compositional matrix adjust.
 Identities = 168/330 (51%), Positives = 256/330 (78%), Gaps = 1/330 (0%)

Query  5    LVTGCAGFIGMHCVQRLLERGERVVGIDNLNAYYDVGLKHARLDRLHCQSDFTFEQIDVA  64
            L+TG AGFIG H  ++L+ +G+ V+G+D++N YY V+LK+ RL  +  + +FTF+++ + 
Sbjct  4    LITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKVKLE  62

Query  65   DRDAMHALFARVRPHRVLHLAAQAGVRYSIDQPDDYTDSNLLGFGNILQGCRAQQVEHLV  124
            + D +  +F   +P+ V++LAAQAGVRYSI++P  Y DSN++GF NIL+  R  ++++L+
Sbjct  63   NYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNLI  122

Query  125  FASSSSVYGGNAKLPFSERDAVDHPVSYYAATKKANEVMAHAYAHLYGIPTTGLRFFTVY  184
            +ASSSSVYG+N+  PFS  D +DHP+S YAATKK+NE+MAH+Y+HLY +PTTGLRFFTVY
Sbjct  123  YASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTVY  182

Query  185  GPWGRPDMALFKFTRAMLAGETIDVYGEGQLVRDFTYIDDIVEGVLRVLDKPATPDAAFD  244
            GPWGRPDMALFKFT+A++ +++IDVY +G+++RDFTY+DDIVE++ R++ KPA+P+    
Sbjct  183  GPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEWS  242

Query  245  PLSPSPGTGLAPYRIFNIGNSAPTLLMDYIQALEEALGMVALKRMRPLQPGDMHSTAADM  304
               P PG++ APY+++NIGN++P  LM++++A+E+ LG  A K    LQPGD+  T A++
Sbjct  243  GADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYANV  302

Query  305  SALASWVGFAPHTPVRDGVARFVHWYKDFY  334
              L   ++F P+T ++DGV +FV+WY ++Y
Sbjct  303  DDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

371) AFE_0609 in NC_011761


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  318 bits (1192),  Expect = 3e-88, Method: Compositional matrix adjust.
 Identities = 165/333 (50%), Positives = 255/333 (77%), Gaps = 2/333 (0%)

Query  4    RILVTGAAGFIGYHLCRRLLTEGWIVHGLDNLNAYYDPALKRDRLAHLENHPDFQFHTVD  63
            +IL+TG+AGFIG HL ++L+ +G  V G+D++N YY  +LK DRL  + ++ +F F+ V 
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKVK  60

Query  64   LADREAMTGLFAGPHFDVVVNLAAQAGVRHSLQDPAAYVDSNLVGFANVLEGCRAQAVDH  123
            L + + ++ +F + + +VVVNLAAQAGVR S+++P +Y+DSN+VGF N+LE  R   +++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  124  LLFASSSSVYGANARLPYSVHDGVDHPLSLYAASKRAGELMAHSYAHLFGIPCTGLRFFT  183
            L++ASSSSVYGAN+  P+S  D +DHPLSLYAA+K++ ELMAH+Y+HL+ +P TGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  184  VYGPWGRPDMAYFRFTRQILAGEPIPVFNHGQMRRDFTYIDDVIEGVVRLLDFAPRPAPM  243
            VYGPWGRPDMA F+FT+ I+ +++I V+NHG+M RDFTY+DD++E++ RL+  ++ P   
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  244  -STERPDPSTSDAPFRLYNIGNHTPVALLDFIAILEDLLARKADIEWLPMQAGDVIATYA  302
             S   PDP++S AP+++YNIGN++PV L++F+  +E+ L++ A  + + +Q+GDV  TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  303  DVGELQEAVGFSPATPLRDGLARFIDWYRSYYD  335
            +V++L   ++F P T ++DG+ +F+DWY  YY 
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

372) Lferr_0760 in NC_011206


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  318 bits (1192),  Expect = 3e-88, Method: Compositional matrix adjust.
 Identities = 165/333 (50%), Positives = 255/333 (77%), Gaps = 2/333 (0%)

Query  4    RILVTGAAGFIGYHLCRRLLTEGWIVHGLDNLNAYYDPALKRDRLAHLENHPDFQFHTVD  63
            +IL+TG+AGFIG HL ++L+ +G  V G+D++N YY  +LK DRL  + ++ +F F+ V 
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKVK  60

Query  64   LADREAMTGLFAGPHFDVVVNLAAQAGVRHSLQDPAAYVDSNLVGFANVLEGCRAQAVDH  123
            L + + ++ +F + + +VVVNLAAQAGVR S+++P +Y+DSN+VGF N+LE  R   +++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  124  LLFASSSSVYGANARLPYSVHDGVDHPLSLYAASKRAGELMAHSYAHLFGIPCTGLRFFT  183
            L++ASSSSVYGAN+  P+S  D +DHPLSLYAA+K++ ELMAH+Y+HL+ +P TGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  184  VYGPWGRPDMAYFRFTRQILAGEPIPVFNHGQMRRDFTYIDDVIEGVVRLLDFAPRPAPM  243
            VYGPWGRPDMA F+FT+ I+ +++I V+NHG+M RDFTY+DD++E++ RL+  ++ P   
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  244  -STERPDPSTSDAPFRLYNIGNHTPVALLDFIAILEDLLARKADIEWLPMQAGDVIATYA  302
             S   PDP++S AP+++YNIGN++PV L++F+  +E+ L++ A  + + +Q+GDV  TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  303  DVGELQEAVGFSPATPLRDGLARFIDWYRSYYD  335
            +V++L   ++F P T ++DG+ +F+DWY  YY 
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

373) P9211_12841 in NC_009976


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  317 bits (1189),  Expect = 4e-88, Method: Compositional matrix adjust.
 Identities = 184/336 (55%), Positives = 260/336 (78%), Gaps = 6/336 (1%)

Query  9    LVTGAAGFIGAALVKKLLKNGEKVIGIDDLNSYYDPGLKQARLDEIQKILKPSSSEWAFY  68
            L+TG+AGFIG+ L KKL+K+G+ VIG+D +N YY  +LK+ RL  I K       + +F 
Sbjct  4    LITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK------ENFTFN  57

Query  69   KIGLEDMDSLRELFLEKSPSVVVNLAAQAGVRYSIENPSAYLNSNLVGFFNILELCRHHS  128
            K+ LE+ D L  +F++  P VVVNLAAQAGVRYSIENP +Y++SN+VGF NILE  RH +
Sbjct  58   KVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFN  117

Query  129  VENLIYASSSSVYGGNRNLPFVETQPVNHPVSFYAATKKSNELMAHSYSHLYKIPATGLR  188
            ++NLIYASSSSVYG+N + PF  ++ ++HP+S+YAATKKSNELMAH+YSHLY++P+TGLR
Sbjct  118  IQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLR  177

Query  189  FFTVYGPWGRPDMAPMIFAKAIFSGKPINIYNQGEMLRDFTYIDDIAESLLRCCYKPATP  248
            FFTVYGPWGRPDMA   F+KAI ++++I++YN+G+M+RDFTY+DDI E++ R   KPA+P
Sbjct  178  FFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASP  237

Query  249  NSNFDSLNPDPSSSLASHRIFNIGNSEPIELLRFIELLEDSLGIRAIKNMLPMQLGDVVA  308
            N +  + +PDP+SS A+ +++NIGN+ P+ L+ F+E +E+ LG  A KN + +Q GDV  
Sbjct  238  NKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPE  297

Query  309  TAADTNLLEKWIDFRPRTSIEEGVKMFTKWYRDFYK  344
            T A+ + L + IDF+P T+I++GV+ F  WY ++YK
Sbjct  298  TYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

374) RSPPHO_02502 in NC_017059


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  317 bits (1190),  Expect = 4e-88, Method: Compositional matrix adjust.
 Identities = 169/335 (51%), Positives = 251/335 (75%), Gaps = 1/335 (0%)

Query  1    MTILVTGSAGFIGNHVALRLLQAGHQVVGVDCHTPYYDVRLKAARTERLLAFPRFREERI  60
            M IL+TG+AGFIG+H+A +L++ GH V+GVD    YY V LK  R  + ++   F  +++
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRL-KSIGKENFTFNKV  59

Query  61   DLADAEETARVFEVYRPRRVVHLAAQAGVRYSLENPRAYVDSNLMGTFTVLEGCRSVGVE  120
             L + ++ ++VF   +P  VV+LAAQAGVRYS+ENPR+Y+DSN++G   +LE  R   ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVFASTSSVYGANREQPFSEHHAADHPLTFYAATKRANEMMAHSYAHMFKLPSTALRFF  180
            +L++AS+SSVYGAN  +PFS  +  DHPL++YAATK++NE+MAH+Y+H+++LP+T+LRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFLFTEAILKGEPIKVFNHGDMVRDFTYIDDIVEGIVRVLDTPPLPVP  240
            TVYGPWGRPDMALF FT AI+++++I V+NHG+M+RDFTY+DDIVE+I R++  P+ P  
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  SLEGIPDPATSPVAPFRVYNIGNSRPVTLLRYIDLVEEALGMTARKTMLPMQIGDVPGTW  300
               G    + S+ AP++VYNIGN+ PV L+ +++ +E+ LG  ARK  + +Q GDVP T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADVSDLSNDTGYQPSTPVEEGVRRFVAWYRAFYKK  335
            A+V DL  D +++P T +++GV +FV WY  +YKK
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

375) VPBB_1859 in NC_019955


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  316 bits (1184),  Expect = 1e-87, Method: Compositional matrix adjust.
 Identities = 182/334 (55%), Positives = 254/334 (77%), Gaps = 0/334 (0%)

Query  1    MKYLVTGAAGFIGSATIRKLNSLGYEVIGIDNINDYYDVELKYARLNFIKNPLFRFFNMD  60
            MK L+TG+AGFIGS   +KL   G  VIG+D+INDYY V LK  RL+ I +  F F ++ 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  61   VSNKNEIERLFEKEKFDRVIHLAAQAGVRYSLVNPHCYAESNLSGFLNVLEACRKSHIKH  120
            + N +++ ++F  E+ + V++LAAQAGVRYS+ NP+ Y +SN+ GF+N+LE  R  +I++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  121  FIYASSSSVYGLNKKVPFSTSDNVDHPVSLYAATKKSNELMAHSYSHLYQLPTTGLRFFT  180
            +IYASSSSVYG N   PFSTSDN+DHP+SLYAATKKSNELMAH+YSHLY+LPTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  181  VYGSWGRPDMAPFIFTEKIINGQSIDINNNGDMWRDFTHINDIVEGIVRISDVIPRINQR  240
            VYG+WGRPDMA F FT  I+N+Q+ID+ N+G+M RDFT ++DIVE+I R+    +  N+ 
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  241  WQFENSTPADSSAPYSIYNIGYGSPICLMDFIKAIENELGIEAKKNYREMQPGDVYQTYA  300
            W   ++ P+ S APY +YNIG  SP+ LM+F+ AIEN LG EA+KNY ++QPGDV +TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  301  DTTAFYQATGYRPSVSVEEGIAEFVAWYRNFYNK  334
            +   +++  +++P  ++++G+  FV WY ++Y+K
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

376) M636_11720 in NC_021848


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  316 bits (1185),  Expect = 9e-88, Method: Compositional matrix adjust.
 Identities = 182/334 (55%), Positives = 254/334 (77%), Gaps = 0/334 (0%)

Query  1    MKYLVTGSAGFIGSATIRKLNSLGYEVIGIDNINDYYDVELKYARLNFIKNPLFRFFNMD  60
            MK L+TG+AGFIGS   +KL   G  VIG+D+INDYY V LK  RL+ I +  F F ++ 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  61   VSNKNEIERLFEKEKFDRVIHLAAQAGVRYSLVNPHCYAESNLSGFLNVLEACRKSHIKH  120
            + N +++ ++F  E+ + V++LAAQAGVRYS+ NP+ Y +SN+ GF+N+LE  R  +I++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  121  FIYASSSSVYGLNKKVPFSTSDNVDHPVSLYAATKKSNELMAHSYSHLYQLPTTGLRFFT  180
            +IYASSSSVYG N   PFSTSDN+DHP+SLYAATKKSNELMAH+YSHLY+LPTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  181  VYGSWGRPDMAPFIFTEKIINGQSIDINNNGDMWRDFTHINDIVEGIVRISDVIPRINQR  240
            VYG+WGRPDMA F FT  I+N+Q+ID+ N+G+M RDFT ++DIVE+I R+    +  N+ 
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  241  WQFENSTPADSSAPYSIYNIGYGSPICLMDFIKAIENELGIEAKKNYREMQPGDVYQTYA  300
            W   ++ P+ S APY +YNIG  SP+ LM+F+ AIEN LG EA+KNY ++QPGDV +TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  301  DTTAFYQATGYRPSVSVEEGIAEFVAWYRNFYNK  334
            +   +++  +++P  ++++G+  FV WY ++Y+K
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

377) Mmwyl1_0799 in NC_009654


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  315 bits (1182),  Expect = 1e-87, Method: Compositional matrix adjust.
 Identities = 187/332 (57%), Positives = 256/332 (78%), Gaps = 9/332 (2%)

Query  1    MKFLVTGAAGFIGMNVCKRLLEAGHDVVGLDSLNAYYLPALKQHRLAQLLPYENFRFVKL  60
            MK+L+TG+AGFIG ++ K+L+  GH V+G+DS+N YY  +LK++RL  +   ENF F K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DLADREGMAQLFAEEQFQRVIHLAAQAGVRYSLEAPFEYVDSNLVGMMTILEGCRQTKVE  120
             L + ++++++F +EQ + V++LAAQAGVRYS+E P  Y+DSN+VG M ILE  R+ +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGMNAKIPFSESDTVDHPVSLYAATKKANELMAHSYSHLYGIPTTGLRFF  180
            +L+YASSSSVYG N+  PFS SD +DHP+SLYAATKK+NELMAH+YSHLY +PTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPGGRPDMAPWLFTEAILNDKPIKVFNHGKMMRDFTYIDDIVEGVIRI-------QD  233
            TVYGP GRPDMA   FT AI+ND++I V+NHG+MMRDFTY+DDIVE++ R+       + 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  234  VLPQAQHSQGTT-APYAIYNIGNNQPIQLSEFIEAIETACGKTAEKIYMDMQPGDVPKTY  292
              + A+   G++ APY +YNIGNN P++L EF+EAIE   GK A K YMD+QPGDVP TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  293  ADTTQLGAVVGYKPATTIQEGMTKFVEWYKAF  324
            A+  +L   +++KP TTIQ+G+ KFV+WY  +
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEY  331

378) M634_12310 in NC_021847


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  315 bits (1180),  Expect = 2e-87, Method: Compositional matrix adjust.
 Identities = 181/334 (55%), Positives = 253/334 (76%), Gaps = 0/334 (0%)

Query  1    MKYLVTGAAGFIGSATIRKINSLGYEVIGIDNINDYYDVELKYARLSFIKNPLFRFFNMD  60
            MK L+TG+AGFIGS   +K+   G  VIG+D+INDYY V LK  RL  I +  F F ++ 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  61   ISNKNEIERLFEKEKFDRVIHLAAQAGVRYSLVNPHCYAESNLSGFLNVLEACRKSHIKH  120
            + N +++ ++F  E+ + V++LAAQAGVRYS+ NP+ Y +SN+ GF+N+LE  R  +I++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  121  FIYASSSSVYGLNKKVPFSTSDNVDHPVSLYAATKKSNELMAHSYSHLYQLPTTGLRFFT  180
            +IYASSSSVYG N   PFSTSDN+DHP+SLYAATKKSNELMAH+YSHLY+LPTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  181  VYGSWGRPDMAPFIFTEKIINGQSIDINNNGDMWRDFTHINDIVEGIVRISDVIPRINQR  240
            VYG+WGRPDMA F FT  I+N+Q+ID+ N+G+M RDFT ++DIVE+I R+    +  N+ 
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  241  WQFENSTPADSSAPYSIYNIGYGSPICLMDFIKAIENELGIEAKKNYREMQPGDVYQTYA  300
            W   ++ P+ S APY +YNIG  SP+ LM+F+ AIEN LG EA+KNY ++QPGDV +TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  301  DTTAFYQATGYRPSVSVEEGIAEFVAWYRNFYNK  334
            +   +++  +++P  ++++G+  FV WY ++Y+K
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

379) BBR47_42600 in NC_012491


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  315 bits (1181),  Expect = 2e-87, Method: Compositional matrix adjust.
 Identities = 176/333 (53%), Positives = 249/333 (75%), Gaps = 12/333 (3%)

Query  1    MSILVTGAAGFIGFHVARRLLEQGQTVWGVDNCNEYYDPVLKSNRLEILQAYPLFRFVKA  60
            M IL+TG+AGFIG H+A++L+ QG+ V GVD+ N+YY   LK +RL  +     F F K 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DIADQSKMDELFREMEPETVIHLAAQAGVRYSLENPHAYTTSNITGFLNILEGCRRSRVK  120
             + +   +  +F + +PE V++LAAQAGVRYS+ENP++Y  SNI GF+NILE  R+  ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLLYASSSSVYGGNTKLPFAEYDPVDEPVSLYAATKKANELMAYTYSHLYGLPATGLRFF  180
            +L+YASSSSVYG+NT  PF+  D +D+P+SLYAATKK+NELMA TYSHLY LP+TGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALYTFTKAILSGEPVRIFNYGNMTRDFTYVDDIVEGMLRLMNRI-----  235
            TVYGPWGRPDMAL+ FTKAI++++++ ++N GNM RDFTYVDDIVE++ RL+++      
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  236  ------PQREGDKAPHEVFNIGNHQPIDLLTFLSILEEKLGKKAVRDYLPIQPGDVPATY  289
                  P+  +  AP  V+NIGN+ P+ L+ F+  +E+KLGK A ++Y+ +QPGDVP TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  290  ASVEALYEATGFRPKTPVDVGISRFVDWYVSYY  322
            A+V+ L+   +F+P T ++ G+++FVDWY+ YY
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

380) B565_3268 in NC_015424


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  315 bits (1181),  Expect = 2e-87, Method: Compositional matrix adjust.
 Identities = 174/335 (52%), Positives = 254/335 (76%), Gaps = 3/335 (0%)

Query  1    MIYLVTGVAGFIGFHVASQLCAAGHRVVGLDNLNDYYEVSLKEARLAQLASFPHFHFERR  60
            M  L+TG AGFIG H+A +L   GH V+G+D++NDYY VSLKE RL  ++   +F F++ 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DLADREAMATLFARHRFERVIHLGAQAGVRYSIDNPFAYADSNLTGMLTVLEGCCQH-GI  119
             L + + ++ +F  ++ E V++L+AQAGVRYSI+NP +Y DSN+ G + +LE C +H  I
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILE-CSRHFNI  118

Query  120  QHLLYASSSSVYGMGDQMPYSTAQQVDHPISLYAATKKSGELMAHAYSALYGLPTTGLRF  179
            Q+L+YASSSSVYG     P+ST++++DHP+SLYAATKKS ELMAH+YS LY LPTTGLRF
Sbjct  119  QNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRF  178

Query  180  FTVYGPWGRPDMAIIKFTRAILAGEPIDVYNHGDLSRDFTYIDDIVAGILAVADQPPRPN  239
            FTVYGPWGRPDMA++KFT+AI+ +++IDVYNHG++ RDFTY+DDIV +I  +  +P+ PN
Sbjct  179  FTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPN  238

Query  240  PGWHaseqsaaesaaPYRIFNIGNGQPVRLLDFIEALEEAIGKPAIKRMLPMQAGDMHAT  299
              W +++  ++ S APY+++NIGN  PVRL++F+EA+E+ +GK A K  + +Q+GD+  T
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPET  298

Query  300  WADSEPLHTLTGLRPATPLKQGVAEFIRWYLDYYR  334
             A+ + L    +++P T +++GV  F+ WYL+YY+
Sbjct  299  YANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

381) Sama_2235 in NC_008700


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  315 bits (1180),  Expect = 2e-87, Method: Compositional matrix adjust.
 Identities = 173/334 (52%), Positives = 260/334 (78%), Gaps = 1/334 (0%)

Query  1    MKILVTGAAGFIGAAACKRLLSQGHQVHGIDNLNDYYDVSLKQARLAALASHPHFQFQRM  60
            MKIL+TG+AGFIG+   K+L+ QGH V G+D++NDYY VSLK+ RL +++ + +F F+++
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKV  59

Query  61   ELADRGAIATLFSTIKPDWVLHLGAQAGVRYSIDNPHAYADANLVGHLNILEGCRQTGVK  120
             L + + ++ +F   +P+ V++L+AQAGVRYSI+NP++Y D+N+VG +NILE  R+  ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGLNKKLPFATSDSVDHPVSLYAATKKANELMSHSYAHLYGVPCTGLRFF  180
            +L+YASSSSVYG N   PF+TSD++DHP+SLYAATKK+NELM+H+Y+HLY +P TGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMAPMLFARAIMAGEPIKVFNQGDMSRDFTFIDDIIEGVIGVLPLPPstss  240
            TVYGPWGRPDMA   F++AI+ +++I V+N+G+M RDFT++DDI+E++  ++  P+S + 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  qwsvesgsssessAPYRVLNIGHGSPVSLMHFIETLENALGRKAIKQFLPMQDGDVKATW  300
            +WS     ++ S APY+V NIG+ SPV LM+F+E++EN LG+ A K+++ +Q GDV  T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADTEDLFAITGVRPKVGIEQGVKAFADWYLNYYH  334
            A+ +DLF   + +P   I++GV+ F DWYL+YY 
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

382) Psyr_5106 in NC_007005


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  314 bits (1179),  Expect = 2e-87, Method: Compositional matrix adjust.
 Identities = 179/334 (54%), Positives = 249/334 (75%), Gaps = 12/334 (3%)

Query  1    MTVLVTGAAGFIGFHVAKRLCELGVEVVGIDNLNDYYSVELKQSRLALLQRLPGFTFHRL  60
            M +L+TG+AGFIG H+AK+L   G  V+G+D++NDYYSV LK+ RL  + +   FTF+++
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DITDAEGLSALFAQNGFEQVIHLAAQAGVRYSLEQPNVYAQSNLVGFINVLEACRQYRPA  120
             + + ++LS +F ++  E V++LAAQAGVRYS+E+P  Y +SN+VGF+N+LE  R++   
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLIYASSSSVYGANTRMPFQVEDAVDRPLSLYAATKRANELTAYSYCHLYGLRATGLRFF  180
            +LIYASSSSVYGANT  PF   D +D+PLSLYAATK++NEL A +Y HLY L +TGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTKAMLAGQPVDIYNHGEMARDFTYIDDIVESILRLRLLP-----  235
            TVYGPWGRPDMALFKFTKA++ +Q++D+YNHG+M RDFTY+DDIVE+I RL   P     
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  236  ------PDAVGSEPPHQLFNIGRGQPVKLLEFVDCLEAALGLRAERRYLPLQAGDVLQTW  289
                  PD+ +S +P +++NIG   PV+L+EFV+ +E  LG  A + Y+ LQ+GDV +T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  290  ADVSALSQWIDFQPQVSVDTGVRAFVDWYREHYQ  323
            A+V  L + IDF+P+ +++ GV  FVDWY E Y+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

383) Mlab_0897 in NC_008942


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  314 bits (1178),  Expect = 3e-87, Method: Compositional matrix adjust.
 Identities = 186/332 (57%), Positives = 254/332 (77%), Gaps = 12/332 (3%)

Query  5    TILITGAAGFIGFHLSKKLLEQGIQVIGYDNINSYYDVNLKYARLAILKDYPDFIFVKGD  64
             ILITG+AGFIG HL+KKL+ QG  VIG D+IN YY V+LK  RL  +    +F F K  
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKVK  60

Query  65   LADKSEVENVFTKYKPDIVVNLAAQAGVRYSIDNPQVYIDSNIIGFFNILEACRHHPAEH  124
            L +  ++ +VF   +P++VVNLAAQAGVRYSI+NP+ YIDSNI+GF NILE  RH   ++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  125  LIYASSSSVYGNQEKTPFSTDDDVSRPISLYAATKKSNELMAYTYSHLYGIPTTGLRFFT  184
            LIYASSSSVYG +   PFST D++ +P+SLYAATKKSNELMA TYSHLY +PTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  185  VYGPYGRPDMAYFSFTRKILAGETIQIFNNGDMYRDFTYIDDIVQGIENMLEHPPAAD--  242
            VYGP GRPDMA F FT+ I+ +++I+++N+G+M RDFTY+DDIV++I  ++  P++++  
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  243  ------ENGDR---YKLYNIGNNHPEKLMYFIEVLEKCIGREAKKEFLPMQPGDVYQTYA  293
                  + G     YK+YNIGNN P +LM F+E +E+ +G+EA+K+++ +QPGDV +TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  294  DVDDLVWDFGFKPETSVEVGLGKFVEWYKKYF  325
            +VDDL +D++FKPET+++ G+ KFV+WY  Y+
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

384) PHZ_c2237 in NC_011144


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  314 bits (1178),  Expect = 3e-87, Method: Compositional matrix adjust.
 Identities = 179/334 (54%), Positives = 254/334 (77%), Gaps = 2/334 (0%)

Query  1    MAILVTGSAGFIGFHLSRRLLQRGEQVIGVDNLNAYYDPSlkaarlalleaeaGYRHARI  60
            M IL+TG+AGFIG HL+++L+++G+ VIGVD++N YY  SLK  RL  +  E  +   ++
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKV  59

Query  61   DLADREAMAALFEETRPDGVVNLAAQAGVRYSLENPAAYADSNVVGFLNVLEGCRAVQPR  120
             L + + ++ +F + +P+ VVNLAAQAGVRYS+ENP +Y DSN+VGF+N+LE  R  + +
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASTSSVYGANGKLPFSVHDHAVHPITLYAATKLANEAMAHAYAHLFGVPCTGLRFF  180
            +L+YAS+SSVYGAN   PFS  D+  HP++LYAATK +NE MAH+Y+HL+ +P TGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMSPFKFLSAILEGRPIDVYGQGRMQRDFTYVDDIVDGVIAALDRPAQANP  240
            TVYGPWGRPDM+ FKF  AI+++++IDVY +G M RDFTYVDDIV+++   + +PA +N 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  EWDPQRPDPASSGVAPWRIYNIGASEPVELMRYIETFERKLGCKAKLNLMPMQPGDVVST  300
            EW    PDP+SS  AP ++YNIG + PV LM ++E++E KLG  A+ N M +QPGDV  T
Sbjct  240  EWSGADPDPGSS-YAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPET  298

Query  301  AADVSETVRDLGYRPTTSIEEGVGRFVDWYLDYY  334
             A+V +  RD++++P T+I++GV +FVDWYL+YY
Sbjct  299  YANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

385) AFE_1966 in NC_011761


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  314 bits (1178),  Expect = 3e-87, Method: Compositional matrix adjust.
 Identities = 166/332 (50%), Positives = 253/332 (77%), Gaps = 4/332 (1%)

Query  4    RILITGAAGFIGFHLARRLLADGWVVSGIDNLNDYYDPGLKRGRLAQLEGHPAFQFQPLD  63
            +ILITG+AGFIG HLA++L+ +G  V G+D++NDYY  +LK +RL  + G   F F+ + 
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKVK  60

Query  64   LADREGMQTLFAGPHFDAVVNLAAQAGVRHSLKAPHSYVDSNVVGFLNVLEGCRAQGVDH  123
            L + +++  +F + + + VVNLAAQAGVR S+  P++Y+DSN+VGF+N+LE  R   +++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  124  LLFASSSSVYGANNRLPYSVHDPVDHPVSLYAATKRAGELMAHSYAHLYGIPSTGLRFFT  183
            L++ASSSSVYGAN   P+S  D +DHP+SLYAATK++ ELMAH+Y+HLY +P+TGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  184  VYGPWGRPDMAYFSFTQKILAGHPIPVFNHGQMQRDYTYIDDIIEGVARLIPRAPEAQDI  243
            VYGPWGRPDMA F FT+ I+ +++I V+NHG+M RD+TY+DDI+E+++RL+ +++ ++  
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  244  WPE---DPASSAAPFCIQNIGNHTPVALTDFIRILEECLGKSAQIEWLPMQDGDVVATYA  300
            W+    DP+SS AP+ + NIGN++PV L +F+  +E+ LGK A+ + + +Q GDV  TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  301  DVTALQQSVGFAPNTPLRTGLQRFVTWYRQYY  332
            +V  L + ++F P+T ++ G+++FV WY +YY
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

386) Lferr_1634 in NC_011206


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  314 bits (1179),  Expect = 3e-87, Method: Compositional matrix adjust.
 Identities = 166/332 (50%), Positives = 253/332 (77%), Gaps = 4/332 (1%)

Query  12   RILITGAAGFIGFHLARRLLADGWVVSGIDNLNDYYDPGLKRGRLAQLEGHPAFQFQPLD  71
            +ILITG+AGFIG HLA++L+ +G  V G+D++NDYY  +LK +RL  + G   F F+ + 
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKVK  60

Query  72   LADREGMQTLFAGPHFDAVVNLAAQAGVRHSLKAPHSYVDSNVVGFLNVLEGCRAQGVDH  131
            L + +++  +F + + + VVNLAAQAGVR S+  P++Y+DSN+VGF+N+LE  R   +++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  132  LLFASSSSVYGANNRLPYSVHDPVDHPVSLYAATKRAGELMAHSYAHLYGIPSTGLRFFT  191
            L++ASSSSVYGAN   P+S  D +DHP+SLYAATK++ ELMAH+Y+HLY +P+TGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  192  VYGPWGRPDMAYFSFTQKILAGHPIPVFNHGQMQRDYTYIDDIIEGVARLIPRAPEAQDI  251
            VYGPWGRPDMA F FT+ I+ +++I V+NHG+M RD+TY+DDI+E+++RL+ +++ ++  
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  252  WPE---DPASSAAPFCIQNIGNHTPVALTDFIRILEECLGKSAQIEWLPMQDGDVVATYA  308
            W+    DP+SS AP+ + NIGN++PV L +F+  +E+ LGK A+ + + +Q GDV  TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  309  DVTALQQSVGFAPNTPLRTGLQRFVTWYRQYY  340
            +V  L + ++F P+T ++ G+++FV WY +YY
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

387) PMT1903 in NC_005071


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  314 bits (1177),  Expect = 4e-87, Method: Compositional matrix adjust.
 Identities = 180/334 (54%), Positives = 251/334 (76%), Gaps = 4/334 (1%)

Query  5    VVVTGAAGFIGAALVQRLLAQGDRVIGIDNLNDYYDPSLKRARLAQVEAASLKASWTFYP  64
            +++TG+AGFIG+ L ++L+ QG+ VIG+D++NDYY  SLK  RL  +     K + TF  
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG----KENFTFNK  58

Query  65   IALEDGAAIEELFKAEKPEVVVNLAAQAGVRYSLENPAAYIQANLVGFGHILEGCRHHGV  124
            + LE+   +  +F  E+PEVVVNLAAQAGVRYS+ENP +YI++N+VGF +ILE  RH  +
Sbjct  59   VKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNI  118

Query  125  QHLVYASSSSVYGGNRNLPFHEQQPVNHPVSLYAATKKANELMAHTYSHLYGLPATGLRF  184
            Q+L+YASSSSVYG+N + PF   + ++HP+SLYAATKK+NELMAHTYSHLY LP+TGLRF
Sbjct  119  QNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRF  178

Query  185  FTVYGPWGRPDMAPMLFAKAILAGEPIKVFNYGKMQRDFTYIDDIVEGLLRCCDKPATAN  244
            FTVYGPWGRPDMA   F+KAI+ +++I V+N G+M RDFTY+DDIVE++ R   KPA++N
Sbjct  179  FTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPN  238

Query  245  LGFDPRNPDPATAAVPHRLFNIGNSQPIELMHFIEFLENSLGREAVKDFQPMQPGDVMAT  304
                  +PDP+++  P +++NIGN+ P+ LM+F+E +EN LG+EA K++  +QPGDV  T
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPET  298

Query  305  AADTSALEAWVDFRPSTPIAEGVECFSQWYRSFY  338
             A+   L   +DF+P T I +GV+ F +WY  +Y
Sbjct  299  YANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

388) P9303_25381 in NC_008820


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  314 bits (1177),  Expect = 4e-87, Method: Compositional matrix adjust.
 Identities = 177/334 (53%), Positives = 252/334 (76%), Gaps = 4/334 (1%)

Query  5    VVVSGAAGFIGAALVQRLLAQGDRVIGIDNLNDYYDPSLKRARLAQIEAASLKASWTFYP  64
            ++++G+AGFIG+ L ++L+ QG+ VIG+D++NDYY  SLK  RL  I     K + TF  
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG----KENFTFNK  58

Query  65   IALEDGAGIEELFKAEKPQVVVNLAAQAGVRYSLENPAAYIQANLVGFGHILEGCRHHGV  124
            + LE+  ++  +F  E+P+VVVNLAAQAGVRYS+ENP +YI++N+VGF +ILE  RH  +
Sbjct  59   VKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNI  118

Query  125  QHLVYASSSSVYGGNRNLPFHEQQPVNHPVSLYAATKKANELMAHTYSHLYGLPATGLRF  184
            Q+L+YASSSSVYG+N + PF   + ++HP+SLYAATKK+NELMAHTYSHLY LP+TGLRF
Sbjct  119  QNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRF  178

Query  185  FTVYGPWGRPDMAPMLFAKAILAGEPIKVFNYGKMQRDFTYIDDIVEGLLRCCDKPATAN  244
            FTVYGPWGRPDMA   F+KAI+ +++I V+N G+M RDFTY+DDIVE++ R   KPA++N
Sbjct  179  FTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPN  238

Query  245  LGFDPLNPDPATAAVPHRLFNIGNSQPIELMHFIELLEKSLGREAVKDFQPMQPGDVMAT  304
                  +PDP+++  P +++NIGN+ P+ LM+F+E +E+ LG+EA K++  +QPGDV  T
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPET  298

Query  305  AADTSALEAWVNFRPSTPIAEGVECFSQWYRSFY  338
             A+   L   ++F+P T I +GV+ F +WY  +Y
Sbjct  299  YANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

389) L483_12850 in NC_021491


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  314 bits (1177),  Expect = 4e-87, Method: Compositional matrix adjust.
 Identities = 176/334 (53%), Positives = 256/334 (77%), Gaps = 12/334 (3%)

Query  1    MPVLITGVAGFIGFHVACRLCEAGIEVIGIDNLNAYYSVELKRARLQQLSSFANFRFQPL  60
            M +LITG AGFIG H+A +L   G  VIG+D++N YYSV LK  RL+ ++   NF F+ +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DIADSVDLQQLFSGQAFSEVIHLAAQAGVRYSLDNPGAYGQANLVGFLNMLEACRQQPPR  120
             + +  DL ++F ++    V++LAAQAGVRYS++NP +Y ++N+VGF+N+LE  R+   +
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLIYASSSSVYGANAKLPFSVDDPVEQPVSLYAASKRANELMAHSYAHLYRLPTTGLRFF  180
            +LIYASSSSVYGAN+  PFS  D +++P+SLYAA+K++NELMAH+Y+HLY LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTRAMLEGRPIEIYNNGLMGRDFTYIDDIVESILRLRLKP-----  235
            TVYGPWGRPDMALFKFT+A++++++I++YN+G M RDFTY+DDIVE+I RL  KP     
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  236  ------PQPAHGRPPCQLFNIGRGQPVRLLHFVECLEDALGIKAQRDYLPLQAGDVLETW  289
                  P+P+ + +P +++NIG   PVRL++FVE +E+ LG  A+++Y+ LQ+GDV ET 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  290  ADVGSLARWVDFTPGTSLEHGINAFVGWYRDFYR  323
            A+V+ L R +DF P T++++G+N FV+WY ++Y+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

390) PputGB1_2847 in NC_010322


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  314 bits (1176),  Expect = 5e-87, Method: Compositional matrix adjust.
 Identities = 179/334 (54%), Positives = 255/334 (77%), Gaps = 12/334 (3%)

Query  1    MPVLITGVAGFIGFHVARRLCEAGIDVVGIDNLNAYYSVELKLARLQRLFGFANFRFQTL  60
            M +LITG AGFIG H+A++L   G  V+G+D++N YYSV LK  RL+ + G  NF F+ +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  61   DIANSADLQQLFARQAFSEVIHLAAQAGVRYSLDNPGAYGQANLVGFLNILEACRQQPPR  120
             + N  DL ++F  +    V++LAAQAGVRYS++NP +Y ++N+VGF+NILE  R+   +
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLIYASSSSVYGANAKLPFSIDDPVEQPVSLYAASKRANELMAHSYAHLYRIPTTGLRFF  180
            +LIYASSSSVYGAN+  PFS  D +++P+SLYAA+K++NELMAH+Y+HLY +PTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTRAMLEGRPIEVYNNGLMGRDFTYIDDIVESIVRLRLKPPRP--  238
            TVYGPWGRPDMALFKFT+A++++++I+VYN+G M RDFTY+DDIVE+I RL  KP+ P  
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  239  ----TEGQP-----PCQLFNIGRGQPVRLLQFVECLEAALGIKAQRDYLPLQAGDVLETW  289
                ++ +P     P +++NIG   PVRL++FVE +E  LG  A+++Y+ LQ+GDV ET 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  290  ADVGSLARWIDYSPGTSLEHGVNAFVGWYRDFYR  323
            A+V+ L R ID+ P T++++GVN FV+WY ++Y+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

391) BF3921 in NC_006347


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  313 bits (1172),  Expect = 1e-86, Method: Compositional matrix adjust.
 Identities = 177/349 (51%), Positives = 261/349 (75%), Gaps = 16/349 (4%)

Query  1    MRVLVTGAAGFIGSFVCRELLLRGDEVVGLDNINTYYEVDLKYDRLATLTINRESVDWYK  60
            M++L+TG+AGFIGS + + L+ +G+ V+G+D+IN YY V LK DRL ++           
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK---------  51

Query  61   FVQSDTYQNFRFIRMNLEDRQAMQMLFANEHFDRVVNLAAQAGVRYSIENPYAYVESNVN  120
                   +NF F +++LE+ + +  +F +E+ + VVNLAAQAGVRYSIENP +Y++SN+ 
Sbjct  52   -------ENFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIV  104

Query  121  GFLNVLEGCRHNGVKHLVYASSSSVYGLNGKVPFSEKDGIAHPVSLYAATKKSDELMAHT  180
            GF+N+LE  RH  +++L+YASSSSVYG N   PFS  D I HP+SLYAATKKS+ELMAHT
Sbjct  105  GFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHT  164

Query  181  YSYLYGIPTTGLRFFTVYGPWGRPDMSPFLFADAMLHNRSIKVFNNGDMLRDFTYIDDIV  240
            YS LY +PTTGLRFFTVYGPWGRPDM+ F F+ A++++++I V+N+G+M+RDFTY+DDIV
Sbjct  165  YSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIV  224

Query  241  EGVLRVIDHIPMPDPRWCAEYPNPSSSTAPYKIYNIGNSYPVKLTDFIQAIEDMIGYSAE  300
            E++ R++   + P+  W +  P+P+SS APYK+YNIGN+ PV+L +F++AIE+ +G  A 
Sbjct  225  EAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEAR  284

Query  301  KIYLPMQSGDIYQTNADTTSLQEELGFKPNKSIKEGVKETIEWYRSYYK  349
            K Y+ +Q+GD+ +T A+   L  +++FKP+ +I++GV+  ++WY  YYK
Sbjct  285  KNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

392) Sfri_1374 in NC_008345


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  313 bits (1175),  Expect = 5e-87, Method: Compositional matrix adjust.
 Identities = 193/333 (58%), Positives = 260/333 (79%), Gaps = 3/333 (0%)

Query  1    MKYLVTGAAGFIGNFVAERLCDQGHEVVGLDNLNDYYDPNLKLARLKRIEHFSSFRFIKM  60
            MK L+TG+AGFIG+ +A +L  QGH V+G+D++NDYY  +LK  RLK I    +F F K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DIADRTAIAELFETEKFDRVIHLAAQAGVRYSIENPMAYVDSNLVGMATILEGCRHNKVQ  120
             + +   ++ +F  E+ + V++LAAQAGVRYSIENP +Y+DSN+VG   ILE  RH ++Q
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGMNEKMPFSTEDAVDHPVSLYAATKKANELMAHSYSHLYNLPTTGLRFF  180
            +L+YASSSSVYG N   PFST D +DHP+SLYAATKK+NELMAH+YSHLYNLPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMAPFLFTDAILNDREIKVFNHGKMKRDFTYIDDIVEGIIRI--QDVVPQQ  238
            TVYGPWGRPDMA F FT AI+ND+ I V+NHG+M RDFTY+DDIVE+I R+  +   P++
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  239  DsensntspsssKAPYKVFNIGNNEPIALMTFieaiekaagkiaekNFMPMQAGDVPATF  298
            +   ++  P+SS APYKV+NIGNN P+ LM F+EAIE+  GK A KN+M +Q+GDVP T+
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  299  ADIDSLIDQINFKPSMAIDKGIDNFVQWFISYY  331
            A++D L+ +I+FKP  +I+ G+++FV+W++ YY
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

393) PSPTO_5586 in NC_004578


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  313 bits (1175),  Expect = 5e-87, Method: Compositional matrix adjust.
 Identities = 176/335 (53%), Positives = 252/335 (76%), Gaps = 12/335 (3%)

Query  1    MTVLVTGAAGFIGFHVAKHLCEQGIEVVGIDNLNDYYSVELKHSRLAILERMPGFVFKRL  60
            M +L+TG+AGFIG H+AK L  QG  V+G+D++NDYYSV LK+ RL  + +   F F+++
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DITDATGLSTLFEHNTFEQVIHLAAQAGVRYSMEQPDAYIQSNLVGFSNVLEACRQHRPS  120
             + +  +LS +F ++  E V++LAAQAGVRYS+E+P +YI+SN+VGF N+LE  R+    
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLIYASSSSVYGANTRLPFRVEDAVDRPLSLYAATKRANELAAYSYCHLYGLRATGLRFF  180
            +LIYASSSSVYGANT  PF   D +D+PLSLYAATK++NEL A +Y HLY L +TGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTQAMLREEPVDIYNHGEMARDFTYIDDIVESILRLRLRP-----  235
            TVYGPWGRPDMALFKFT+A++ ++++D+YNHG+M RDFTY+DDIVE+I RL  +P     
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  236  ------PEPAGGEPAHQLFNIGRGQPVKLLEFVDCLEKALGLKAQRRYLPLQAGDVLQTW  289
                  P+P+++ ++ +++NIG   PV+L+EFV+ +E+ LG  A++ Y+ LQ+GDV +T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  290  ADVTALARWIDFQPHVSVDSGVSAFVEWYREHYQS  324
            A+V  L R IDF+P+ +++ GV+ FV+WY E Y+ 
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

394) Alide_0482 in NC_014910


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  313 bits (1174),  Expect = 6e-87, Method: Compositional matrix adjust.
 Identities = 170/332 (52%), Positives = 254/332 (77%), Gaps = 1/332 (0%)

Query  5    LVTGCAGFIGMHCAQRLLERGERVVGIDNLNAYYDVGLKHARLDRLRGQGDFTFEQIDVA  64
            L+TG AGFIG H A++L+ +G+ V+G+D++N YY V+LK+ RL  + G+ +FTF+++ + 
Sbjct  4    LITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKVKLE  62

Query  65   DRDAMHALFARVRPHRVLHLAAQAGVRYSIDQPDDYTDSNLLGFGNILQGCRAQQVEHLV  124
            + D +  +F   +P+ V++LAAQAGVRYSI++P  Y DSN++GF NIL+  R  ++++L+
Sbjct  63   NYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNLI  122

Query  125  FASSSSVYGGNAKLPFSERDAVDHPVSYYAATKKANEVMAHAYAHLYGIPTTGLRFFTVY  184
            +ASSSSVYG+N+  PFS  D +DHP+S YAATKK+NE+MAH+Y+HLY +PTTGLRFFTVY
Sbjct  123  YASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTVY  182

Query  185  GPWGRPDMALFKFTRAMLAGEAIDVYGQGRLVRDFTYIDDIVEGVLRVLDKPATPDAGHD  244
            GPWGRPDMALFKFT+A++ ++AIDVY +G ++RDFTY+DDIVE++ R++ KPA+P+    
Sbjct  183  GPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEWS  242

Query  245  PLAPNPGTSTAPYRIFNIGNSTPTLLMDYITALEAALGTTAIKRMLPIQPGDMHStaadt  304
               P+PG+S APY+++NIGN++P  LM+++ A+E  LG  A K  + +QPGD+  T A+ 
Sbjct  243  GADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYANV  302

Query  305  aalaaWVGFTPATPVREGVARFVHWYRGFYES  336
              L   ++F P T +++GV +FV+WY  +Y  
Sbjct  303  DDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

395) wbnF in NC_016632


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  313 bits (1174),  Expect = 7e-87, Method: Compositional matrix adjust.
 Identities = 181/334 (55%), Positives = 257/334 (77%), Gaps = 1/334 (0%)

Query  3    MKFLVTGAAGFIGYHVATRLLADGNEVIGLDNLNNYYDVALKISRLHLLIHQSKFQFIKL  62
            MK+L+TG+AGFIG H+A +L+ +G+ VIG+D++N+YY V+LK  RL   I + +F F K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKS-IGKENFTFNKV  59

Query  63   DLADSTGMASMFAEHKFQRVIHLAAQAGVRFSLENPLSYADSNLIGYLNILEGCRHNKVE  122
             L +  +++ +F +++ + V++LAAQAGVR+S+ENP +Y DSN++G++NILE  RH +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  123  HLLYASSSAVYGLNSKLPSSTADFTDHPVSLYAATKKANELMSHSYSYLYGIPSTGLRFF  182
            +L+YASSS+VYG N+  P ST+D  DHP+SLYAATKK+NELM+H+YS LY +P+TGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  183  TVYGPWGRPDMALFKFTKAMLAGESIDVYNKGEMYRDFTYIDDVTEVIVRLQALIPKPNS  242
            TVYGPWGRPDMALFKFTKA++ +++IDVYN G+M RDFTY+DD+ E I RL    + PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  243  HLIINKKLPTMSSAPYCVYNIGNNTSVKVIEYIRVLEQELGVIANKNMLSIQSGDVMSTH  302
            +       P  S APY VYNIGNN++V+++E++  +E+ LG  A KN + +Q+GDV  T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  303  ADTDKLYAAIGFKPKTCIQDGVKLFVNWYREFYK  336
            A+ D L+  I+FKP T IQDGV+ FV+WY E+YK
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

396) Fraau_2452 in NC_017033


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  313 bits (1173),  Expect = 8e-87, Method: Compositional matrix adjust.
 Identities = 183/332 (56%), Positives = 251/332 (76%), Gaps = 1/332 (0%)

Query  1    MRILVTGAAGFIGAALVERLLARGDEVAGLDNHNDYYDPALKEARLARFHDHPAYRHQRS  60
            M+IL+TG+AGFIG+ L  +L+ +G+ V G+D+ NDYY  +LKE RL  + +   +  ++ 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  61   DLADAGRLDALFADFRPQRVVNLAAQAGVRYSLQNPAAYISSNLVGFGNVLEACRHHEVE  120
             L + + L  +F D +P+ VVNLAAQAGVRYS++NP +YI SN+VGF N+LE  RH +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGANRSMPFSVDDPVDHPLSLYAATKKSNELMAHSYSHLYALPTTGLRFF  180
            +L+YASSSSVYGAN S PFS  D +DHPLSLYAATKKSNELMAH+YSHLY LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMAPMLFADRISRGQPLDVFNYGHHRRDFTYIDDIVEGIIRTLdrppaadp  240
            TVYGPWGRPDMA   F+  I  +Q++DV+N G+  RDFTY+DDIVE+I R + +P++++ 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  dydpMQPHPGRSNAPYRVYNIGNDQPVPLLQFIELMEQGLGRVVEKRLLPMQPGDVPDTW  300
            +    +P+PG S APY+VYNIGN+ PV L++F+E +E+ LG+   K  + +QPGDVP+T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADVTALREDVGYAPSTSIEAGVSAFVDWYRRY  332
            A+V  L  D+++ P T+I+ GV+ FVDWY  Y
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEY  331

397) Odosp_0133 in NC_015160


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  313 bits (1174),  Expect = 8e-87, Method: Compositional matrix adjust.
 Identities = 181/349 (52%), Positives = 257/349 (74%), Gaps = 16/349 (4%)

Query  1    MKILVTGAAGFIGSYVVQRLLERGDEVVGLDNINDYYEVELKYGRLAECGIVKEEVGWYK  60
            MKIL+TG+AGFIGS + ++L+ +G+ V+G+D+INDYY V LK +RL   G  KE+     
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG--KEN-----  53

Query  61   LVQSRKWPAYRFIRMNLEDSQAMEMLFVNERFGRVCHLAAQAGVRYSITNPRAYIESNID  120
                     + F +++LE+ + +  +FV+E+   V +LAAQAGVRYSI NPR+YI+SNI 
Sbjct  54   ---------FTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIV  104

Query  121  GFFNVLECCRWNRVEHLVFASSSSVYGLNGKVPFSEKDSIAHPVSLYAASKKSNELMAHA  180
            GF N+LEC R   +++L++ASSSSVYG N   PFS  D+I HP+SLYAA+KKSNELMAH+
Sbjct  105  GFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHT  164

Query  181  YSHLYGIPVTGLRFFTVYGPWGRPDMSPFLFADAVLHDRPVKVFNQGDMLRDFTYIDDIA  240
            YSHLY +P TGLRFFTVYGPWGRPDM+ F F+ A+++D+++ V+N+G+M+RDFTY+DDI 
Sbjct  165  YSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIV  224

Query  241  EGVIRCIDRVAEPDPAWNAECPDPACSSAPYRIYNIGNSEPVRLMDFIaaveaacekeav  300
            E++ R + + A P+  W++  PDP+ S APY++YNIGN+ PVRLM+F+ A+E    KEA 
Sbjct  225  EAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEAR  284

Query  301  keYLPMQPGDVYQTNADTSALQRDMGYKPSKDIREGIRETVAWFKSYYH  349
            K+Y+ +QPGDV +T A+   L RD+++KP   I++G+   V W+  YY 
Sbjct  285  KNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

398) HYPMC_2845 in NC_015717


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  313 bits (1173),  Expect = 9e-87, Method: Compositional matrix adjust.
 Identities = 181/333 (55%), Positives = 262/333 (79%), Gaps = 1/333 (0%)

Query  1    MKFLVTGAAGFIGFYTCLRLLERGDDVVGVDNLNGYYDPALKKARLVNLGGRPGFSFLHL  60
            MK+L+TG+AGFIG     +L+ +G+ V+GVD++N+YY  +LK  RL ++G +  F+F  +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG-KENFTFNKV  59

Query  61   DIAERSAMAELFRVQRFDKVIHLAAQAGVRYGMHNPHAYIDSNIVGTQNVLEGCRHNDVQ  120
             + +   ++ +F  ++ + V++LAAQAGVRY+++NP++YIDSNIVG  N+LE  RH ++Q
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVMASSSSVYGANTKMPFSEHDNVDHPVSLYAATKKANElaahayahlyRLPITALRFF  180
            +L+ ASSSSVYGANT  PFS  DN+DHP+SLYAATKK+NEL AH+Y+HLY LP T+LRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMAYFNFTKKILAGEPIEIFNGGDHARDFTYIDDIVEGVLRTADKIAAPDP  240
            TVYGPWGRPDMA F+FTK I+ +++I+++N G+  RDFTY+DDIVE++ R   K A+P+ 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  NWDSNAPDPAISDAPYRVYNIGNNKPVALMDFVAAIEKATGREAKKTFLPMQPGDVAKTF  300
            +W +  PDP+ S APY+VYNIGNN PV LM+FV AIE+  G+EA+K ++ +QPGDV+ T+
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADIDDLVHDVGFRPSTSLDDGIARFVAWYRSYY  333
            A++DDL +D++F+P T+++DG+ +FV WY  YY
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

399) LPV_1958 in NC_018140


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  313 bits (1173),  Expect = 9e-87, Method: Compositional matrix adjust.
 Identities = 179/334 (54%), Positives = 257/334 (77%), Gaps = 2/334 (0%)

Query  1    MKVLITGVCGFIGMHTAISFLKKSYHVIGIDNLSSA-NIDLKKSRLNQILPYDNFTFLQI  59
            MK+LITG  GFIG H A  ++K++  VIG+D+++   ++ LK  RL+ I   +NFTF ++
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  60   DICNRKNLMQVFDYEKPQLVIHLAAQTGVRHSLKEPFAYGNSNLLGFINILEGCRHSGVM  119
             + N  +L +VF  E+P++V++LAAQ+GVR S+ +P +Y +SN++GF+NILE  RH  + 
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  120  HLVYASSSSVYGLNSCVPFSEHQATDHPLSLYAATKKANELMAHSYSHLFGLPTTGLRFF  179
            +L+YASSSSVYG N+  PFS  +  DHPLSLYAATKK+NELMAH+YSHL+ LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  180  TVYGPWGRPDMAPFLFIKAVFAKTAIDVFNHGQMMRDFTYVDDVVEGIHHVIEKPASANP  239
            TVYGPWGRPDMA F F KA+    AIDV+NHG+MMRDFTYVDD+VE+I +++ KPAS+N 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  240  VFDPYTPDPATSSAPYRIFNIGNSHPISLMEFIHQLEKCTGLPIKKNYLDIQPGDMLTTH  299
                  PDP++S APY+++NIGN+ P+ LMEF++ +E+  G   +KNY+D+QPGD+  T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  300  SDINNLYEWTGFKPQTSLEQGVFHFVQWYKDYFK  333
            +++++L+   +FKP+T++++GV  FV+WY +Y+K
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

400) Alide2_0439 in NC_015422


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  313 bits (1173),  Expect = 9e-87, Method: Compositional matrix adjust.
 Identities = 170/332 (52%), Positives = 254/332 (77%), Gaps = 1/332 (0%)

Query  5    LVTGCAGFIGMHCAQRLLERGERVVGIDNLNAYYDVGLKHARLGRLHGQGDFTFEQIDVA  64
            L+TG AGFIG H A++L+ +G+ V+G+D++N YY V+LK+ RL  + G+ +FTF+++ + 
Sbjct  4    LITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKVKLE  62

Query  65   DRDAMHALFARVRPHRVLHLAAQAGVRYSIDQPDDYTDSNLLGFGNILQGCRAQQVEHLV  124
            + D +  +F   +P+ V++LAAQAGVRYSI++P  Y DSN++GF NIL+  R  ++++L+
Sbjct  63   NYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNLI  122

Query  125  FASSSSVYGGNAKLPFSERDAVDHPVSYYAATKKANEVMAHAYAHLYGIPTTGLRFFTVY  184
            +ASSSSVYG+N+  PFS  D +DHP+S YAATKK+NE+MAH+Y+HLY +PTTGLRFFTVY
Sbjct  123  YASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTVY  182

Query  185  GPWGRPDMALFKFTRAMLAGEAIDVYGQGRLVRDFTYIDDIVEGVLRVLDKPATPDAGHD  244
            GPWGRPDMALFKFT+A++ ++AIDVY +G ++RDFTY+DDIVE++ R++ KPA+P+    
Sbjct  183  GPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEWS  242

Query  245  PLAPNPGTSTAPYRIFNIGNSTPTLLMDYITALEAALGTTAIKRMLPIQPGDMHStaadt  304
               P+PG+S APY+++NIGN++P  LM+++ A+E  LG  A K  + +QPGD+  T A+ 
Sbjct  243  GADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYANV  302

Query  305  aalaaWVGFTPATPVREGVARFVHWYRGFYES  336
              L   ++F P T +++GV +FV+WY  +Y  
Sbjct  303  DDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

401) PputUW4_03050 in NC_019670


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  312 bits (1170),  Expect = 1e-86, Method: Compositional matrix adjust.
 Identities = 171/334 (52%), Positives = 248/334 (75%), Gaps = 11/334 (3%)

Query  1    MTVLVTGAAGFIGFHTVRRLCHEGQEVVGIDNLNDYYDVELKHARLKVLETLPGFRFRKM  60
            M +L+TG+AGFIG H  ++L  +G+ V+G+D++NDYY V LK+ RLK +     F F K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DIVDKPALMDLFRDHGFTEVVHLAAQAGVRYSLDNPDVYAQSNLVGFLNVLEACRHHRPE  120
             + +   L  +F D+    VV+LAAQAGVRYS++NP  Y +SN+VGF+N+LE  RH   +
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLIYASSSSVYGTNSKMPFNVEDPVDHPVSLYAASKRANELLAESYCHLYGLKASGLRFF  180
            +LIYASSSSVYG+N+  PF+  D +DHP+SLYAA+K++NEL+A++Y HLY L ++GLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTDAILKGLPIDIYNQGQMSRDFTYVDDIVEGIARLRPKPPVPQ-  239
            TVYGPWGRPDMALFKFT AI+++ +ID+YN+G+M RDFTYVDDIVE+I+RL  KP+ P+ 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  240  ---------GSGAGVNRLFNIGRGKPVALLDFVECLESALDRQARRNYLPMQAGDVVKTW  290
                     GS+ +  +++NIG   PV L++FVE +E+ L+++AR+NY+ +Q+GDV  T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  291  ADVSALAEWVGFSPQVTLETGVAAFVQWYRQFYR  324
            A+V  L   ++F P+ T++ GV  FV+WY ++Y+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

402) Patl_1087 in NC_008228


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  312 bits (1169),  Expect = 2e-86, Method: Compositional matrix adjust.
 Identities = 191/333 (58%), Positives = 255/333 (77%), Gaps = 5/333 (1%)

Query  1    MKYLVTGAAGFIGNYVAEKLCAEGHDVIGLDNLNDYYDPNLKLARLKRIEHCKTFTFVKA  60
            MK L+TG+AGFIG+ +A KL  +GH VIG+D++NDYY  +LK  RLK I     FTF K 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DISDRNTIAALFSQEKFDRVIHLAAQAGVRYSIENPMAYIDSNLTGMATILEGCRHNNVE  120
             + + + ++ +F +E+ + V++LAAQAGVRYSIENP +YIDSN+ G   ILE  RH N++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGANKKIPFAEGDRVDYPVSLYAATKKSNELMAHTYSHLYSLPTTGLRFF  180
            +L+YASSSSVYGAN   PF+ +D +D P+SLYAATKKSNELMAHTYSHLY+LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMAPFLFTDAVVNDRAIKVFNDGKMQRDFTYIDDIVEGILRIQNVIPKPRe  240
            TVYGPWGRPDMA F FT A+VND+AI V+N+G+M RDFTY+DDIVE+I R+ +  + P  
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  --esnsssessPF--YKLYNIGNNTPVELEAFIGCIENALSKKAVKNYMPMQDGDVVRTF  296
               +  +  +S++  YK+YNIGNN+PV L  F+  IEN L+K A KNYM +Q GDV  T+
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  297  ADITNLESEIGFKPQTELQDGINNFVGWFKQYY  329
            A++ +L  +I+FKP+T +QDG+N+FV+W+ +YY
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

403) SynRCC307_0185 in NC_009482


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  312 bits (1169),  Expect = 2e-86, Method: Compositional matrix adjust.
 Identities = 183/331 (56%), Positives = 260/331 (79%), Gaps = 0/331 (0%)

Query  5    ILVTGAAGFIGAAVCKRILADGESiigidnindyydPGLKISRLKTIEHGNWQFEKLDIS  64
            IL+TG+AGFIG+ + K+++ +G+ +IG+D+INDYY  +LK  RLK+I   N  F+K+ + 
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVKLE  62

Query  65   NQSSMKELFAKHKPCRVIHLAAQAGVRYSIENPSAYIQSNLVGFGNILEGCRHHDVKHLV  124
            N   +  +F  ++P  V++LAAQAGVRYSIENP +YI+SN+VGF NILE  RH ++++L+
Sbjct  63   NYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNLI  122

Query  125  YASSSSVYGGNTNLPFQESQAVNHPISLYAATKKSNELMAHTYSHLYGLPATGLRFFTVY  184
            YASSSSVYG+NT+ PF  S+ ++HP+SLYAATKKSNELMAHTYSHLY LP+TGLRFFTVY
Sbjct  123  YASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTVY  182

Query  185  GPWGRPDMAPMLFAKAILSGQPIRIFNNGLMQRDFTYIDDIVEGIVRVLRKPAAANPKFD  244
            GPWGRPDMA   F+KAI+++Q+I ++N+G M RDFTY+DDIVE+I R+++KPA++N    
Sbjct  183  GPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEWS  242

Query  245  KMKPDPATSWAPHRLFNIGNSNPIPLMEFINCMEDALGIEAIKQFEPIQPGDVEATAADT  304
               PDP++S AP +++NIGN++P+ LMEF++ +E+ LG EA K++  +QPGDV  T A+ 
Sbjct  243  GADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYANV  302

Query  305  AALHEWVGFKPSTSIEEGVKAFARWYRNYYQ  335
              L   ++FKP T+I++GV+ F  WY +YY+
Sbjct  303  DDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

404) VP2023 in NC_004603


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  311 bits (1167),  Expect = 2e-86, Method: Compositional matrix adjust.
 Identities = 182/336 (55%), Positives = 254/336 (76%), Gaps = 2/336 (0%)

Query  1    MKYLVTGAAGFIGSATIRKLNSLGYEVIGIDNINDYYDVELKYARLNFIKNPLFRFFNMD  60
            MK L+TG+AGFIGS   +KL   G  VIG+D+INDYY V LK  RL+ I +  F F ++ 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  61   ISNKNKNEIERLFEKEKFDRVIHLAAQAGVRYSLVNPHCYAESNLSGFLNVLEACRKSHI  120
            + N +  ++ ++F  E+ + V++LAAQAGVRYS+ NP+ Y +SN+ GF+N+LE  R  +I
Sbjct  61   LENYD--DLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNI  118

Query  121  KHFIYASSSSVYGLNKKVPFSTSDNVDHPVSLYAATKKSNELMAHSYSHLYQLPTTGLRF  180
            +++IYASSSSVYG N   PFSTSDN+DHP+SLYAATKKSNELMAH+YSHLY+LPTTGLRF
Sbjct  119  QNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRF  178

Query  181  FTVYGSWGRPDMAPFIFTEKIINGQSIDINNNGDMWRDFTHINDIVEGIVRISDVIPRIN  240
            FTVYG+WGRPDMA F FT  I+N+Q+ID+ N+G+M RDFT ++DIVE+I R+    +  N
Sbjct  179  FTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPN  238

Query  241  QRWQFENSTPADSSAPYSIYNIGYGSPICLMDFIKAIENELGIEAKKNYREMQPGDVYQT  300
            + W   ++ P+ S APY +YNIG  SP+ LM+F+ AIEN LG EA+KNY ++QPGDV +T
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPET  298

Query  301  YADTTAFYQATGYRPSVSVEEGIAEFVAWYRNFYNK  336
            YA+   +++  +++P  ++++G+  FV WY ++Y+K
Sbjct  299  YANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

405) wcaG in NC_005042


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  311 bits (1167),  Expect = 2e-86, Method: Compositional matrix adjust.
 Identities = 177/338 (53%), Positives = 260/338 (77%), Gaps = 6/338 (1%)

Query  4    VLITGAAGFIGAALVKKLLSEGERVIGIDNINEYYDTSLKYARLQYIESSSQEYLKNWVF  63
            +LITG+AGFIG+ L KKL+ +G+ VIG+D+IN+YY  SLK  RL+ I         N  F
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE------NFTF  56

Query  64   HKLGIENIDEIKEIFTKESPRIVVNLAAQAGVRYSLDNPHAYVQSNLVGFCNLLEMCRHY  123
            +K+ +EN D++  +F  E P +VVNLAAQAGVRYS++NP++Y++SN+VGF N+LE  RH+
Sbjct  57   NKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHF  116

Query  124  EVENLIYASSSSVYGGNTNLPFNETQAVNHPVSFYAATKKSNELMAHTYSHLYDLPATGL  183
            +++NLIYASSSSVYG+NT+ PF+ ++ ++HP+S+YAATKKSNELMAHTYSHLY+LP+TGL
Sbjct  117  NIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGL  176

Query  184  RFFTVYGPWGRPDMAPMKFAKAILEGDPIQVFNFGRMKRDFTYIDDVVESIFRCCYLQAT  243
            RFFTVYGPWGRPDMA  KF+KAI+++++I+V+N G M RDFTY+DD+VE+I R     A+
Sbjct  177  RFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPAS  236

Query  244  VNNNFDKSNPDPCTSFAPHRIFNVGNSQPTELDIFINLLEKSLSTKAIRDLLPMQPGDVV  303
             N++   ++PDP +S+AP +++N+GN+ P  L  F++ +E+ L+  A ++ + +QPGDV 
Sbjct  237  PNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVP  296

Query  304  ATAADTQKLKDWTGFSPSTSLEDGIQCFAEWYLSFYQS  341
             T A+ + L    +F P T+++DG++ F +WYL +Y+ 
Sbjct  297  ETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

406) RPC_1433 in NC_007925


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  311 bits (1166),  Expect = 3e-86, Method: Compositional matrix adjust.
 Identities = 180/329 (55%), Positives = 247/329 (76%), Gaps = 9/329 (2%)

Query  1    MSILVTGAAGFIGFHVARELLAAGHHVVGLDSLNDYYDPALKRARLSLLQADAQFEFVQa  60
            M IL+TG+AGFIG H+A+ L+  GH V+G+DS+NDYY  +LK  RL  + +  +F F + 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  61   dladraaiadlFVREKFPVVIHLAAQAGVRYSISHPYAYVDANLQGFINVLEGCRHNGCQ  120
             L +   ++ +FV E+  VV++LAAQAGVRYSI +P +Y+D+N+ GF+N+LE  RH   Q
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLIYASSSSVYGANTKLPFSVADRTDHPVSLYAATKKANEVMAHSYSHLYRLPTTGLRFF  180
            +LIYASSSSVYGANT  PFS +D  DHP+SLYAATKK+NE+MAH+YSHLY LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TIYGPWYRPDMALFLFAKAIVAGQPIKLFNHGKMRRDFTYIDDVTAVVSRLIDRVPQAGA  240
            T+YGPW RPDMALF F+KAIV +Q+I ++NHG+M RDFTY+DD+   +SRL+ + + +  
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  EAFGTAPA--------KIYNVGNHHPEDLMRVVALLEQELGREAKKDMLPMQPGDVPETF  292
            E  G+ P         K+YN+GN+ P  LM  V  +E+ LG+EA+K+ + +QPGDVPET+
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  293  ADVSDLIRDVGFSPATAIEHGIGKFAAWY  321
            A+V DL+RD++F P T+I++G+ KF  WY
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWY  328

407) SynWH7803_0245 in NC_009481


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  311 bits (1166),  Expect = 3e-86, Method: Compositional matrix adjust.
 Identities = 182/334 (55%), Positives = 253/334 (76%), Gaps = 4/334 (1%)

Query  8    ILITGAAGFIGAALAQRLLQRGDRVVGIDSLNSYYDPSLKQARLQQIEAVAAPGAWSFCH  67
            ILITG+AGFIG+ LA++L+++G+ V+G+DS+N YY  SLK+ RL+ I    +    +F  
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI----GKENFTFNK  58

Query  68   qaleaadalqelfaREKPRVVVNLAAQAGVRYSLENPAAYIQSNLVGFGNILEGCRHHGV  127
              LE  D L  +F  E+P VVVNLAAQAGVRYS+ENP +YI+SN+VGF NILE  RH  +
Sbjct  59   VKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNI  118

Query  128  ENLVYASSSSVYGGNRNLPFHEQQPVNHPVSLYAASKKANELMAHTYSHLYGLPATGLRF  187
            +NL+YASSSSVYG+N + PF   + ++HP+SLYAA+KK+NELMAHTYSHLY LP+TGLRF
Sbjct  119  QNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRF  178

Query  188  FTVYGPWGRPDMAPMLFAKAILAGEPIKVFNHGKMQRDFTYIDDIVEGVLRCCDKPATAN  247
            FTVYGPWGRPDMA   F+KAI+ +++I V+NHG+M RDFTY+DDIVE++ R   KPA++N
Sbjct  179  FTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPN  238

Query  248  PNFDALAPDPSTAAAPHRVFNIGNSQPTELLRFIEVMEQALGRQAIKDFQPMQPGDVVAT  307
             +  +  PDP+++ AP +V+NIGN+ P  L+ F+E +E+ LG++A K++  +QPGDV  T
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPET  298

Query  308  AADTSALESWVGFKPSTPIEEGIAQFAHWYRSFY  341
             A+   L   ++FKP T I++G+ +F +WY  +Y
Sbjct  299  YANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

408) Cyagr_2146 in NC_019675


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  311 bits (1166),  Expect = 3e-86, Method: Compositional matrix adjust.
 Identities = 166/333 (50%), Positives = 247/333 (75%), Gaps = 4/333 (1%)

Query  7    ILVTGVAGFIGGAVAEQLLARGERLIGLDNLNAYYDPALKQARLERLEGLAPAGAFRFHR  66
            IL+TG AGFIG+ +A +L+ +G+ +IG+D++N YY  +LK+ RL  +        F F++
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG----KENFTFNK  58

Query  67   LDLVDAEGVAALFAAERPDRVLHLAAQAGVRHSLENPSLYIQSNVVGFGTILEACRHGEV  126
            + L + ++++ +F  E+P+ V++LAAQAGVR S+ENP  YI+SN+VGF  ILE  RH ++
Sbjct  59   VKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNI  118

Query  127  EHLVYASSSSIYGGNRHMPFSEQDPVNHPVSLYAATKKANELMAHTYSHLYGLPATGLRF  186
            ++L+YASSSS+YG+N   PFS  D ++HP+SLYAATKK+NELMAHTYSHLY LP+TGLRF
Sbjct  119  QNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRF  178

Query  187  FTVYGPWGRPDMAPMLFARAILAGEPIRVFNQGRMERDFTYIDDIVEGVIRCLDKPATAD  246
            FTVYGPWGRPDMA   F++AI+ +++I V+N+G M RDFTY+DDIVE++ R + KPA+++
Sbjct  179  FTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPN  238

Query  247  PAFDPLHPDPATAAAPHRIFNIGNARPVPLLRFIELLEQALGRPAIRDLQPMQPGDVPAT  306
                  +PDP+++ AP +++NIGN  PV L+ F+E +E+ LG+ A ++   +QPGDVP T
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPET  298

Query  307  AADTSALESWVGFRPSTAIEVGIGRFAAWYRAF  339
             A+   L   ++F+P T+I+ G+ +F  WY  +
Sbjct  299  YANVDDLFRDIDFKPETTIQDGVNKFVDWYLEY  331

409) S70_10660 in NC_017731


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  311 bits (1164),  Expect = 4e-86, Method: Compositional matrix adjust.
 Identities = 174/334 (53%), Positives = 254/334 (77%), Gaps = 3/334 (0%)

Query  1    MKYLVTGSAGFIGFRLCQRLLDSGHEVVGIDNMNAYYDQGLKQSRLHILEQYPHFRFIPL  60
            MK L+TG+AGFIG +L ++L+  GH V+G+D++N YY  +LK+ RL  + +  +F F  +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DITDREKVVVLCTQEDFDRVIHLAAQAGVRYSLQNPFAYADSNLSGHLAILEGCRQANVK  120
             + + + +  +  +E+ + V++LAAQAGVRYS++NP +Y DSN+ G + ILE  R+ N++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGMSEQTPFSTDMPTDHPVSLYAATKKANELMAHSYSHIYQLPTTGLRFF  180
            +L+YASSSSVYG +   PFST    DHP+SLYAATKK+NELMAH+YSH+Y+LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTKAILAGEPIDVYNNGNLSRDFTFIDDIVEGVIRISDIIPQADP  240
            TVYGPWGRPDMALFKFTKAI+ +++IDVYN+GN+ RDFT++DDIVE++ R+    + ++ 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  E--NGSLSPAQSRAPYRLYNIGNGQPVKLTDFITALEKSLGKKAIKNFLPMQAGDVYTTW  298
            E   +   P+ S APY++YNIGN  PV+L +F+ A+E+ LGK A KN++ +Q+GDV  T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  299  ADTEDLFKVTGYRPQVSIEQGVQAFVDWYQSYYH  332
            A+ +DLF+  +++P+ +I++GV+ FVDWY  YY 
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

410) SELR_26820 in NC_017068


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  310 bits (1162),  Expect = 6e-86, Method: Compositional matrix adjust.
 Identities = 191/332 (58%), Positives = 256/332 (78%), Gaps = 12/332 (3%)

Query  12   KVLITGGAGFIGFHLSKRLLELGATVVGFDNCNDYYDVSLKESRLAILRDFPQYEFIKGD  71
            K+LITG AGFIG HL+K+L+  G  V+G D+ NDYY VSLKE RL  +    ++ F K  
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKVK  60

Query  72   LADESAVNALFEHSKPDIVVNLGAQAGVRYSIDHPRCYIDSNMIGFFNILEACRHNPVEH  131
            L +   ++ +F + +P++VVNL+AQAGVRYSI++PR YIDSN++GF NILE  RH  +++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  132  LLFASSSSVYGNQEKTPFSTTDNVDHPISLYAATKKSNELMAYTYSHLYGIPATGLRFFT  191
            L++ASSSSVYG +   PFST+DN+DHP+SLYAATKKSNELMA TYSHLY +P+TGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  192  VYGPYGRPDMAYFKFANLIREGKPIKIYNNGDMLRDFTYVDDIVAGIEHML---CNPPKE  248
            VYGP GRPDMA FKF++ I ++++I +YN+G+M+RDFTYVDDIV +I +++    +P KE
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  249  NNVGD--------KYKVYNIGNNSPVRLMDFIetlekalgkkaekeYLPMQPGDVYQTYA  300
             + +D         YKVYNIGNNSPVRLM+F+E++E+ LGK A K+Y+ +QPGDV +TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  301  DVSELERDFDFRPKTTIAEGLGHFAKWYREYY  332
            +V +L RD+DF+P TTI +G+  F  WY EYY
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

411) ASA_3338 in NC_009348


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  309 bits (1157),  Expect = 1e-85, Method: Compositional matrix adjust.
 Identities = 172/334 (52%), Positives = 247/334 (74%), Gaps = 1/334 (0%)

Query  1    MKYLVTGAAGFIGFHVARRLCEAGHQVVGLDNLNDYYEVSLKQARLARLLPFPHFHFEQR  60
            MK L+TG+AGFIG H+A++L   GH V+G+D++NDYY VSLK+ RL  +    +F F++ 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   ELADRDAMANLFTSGQFERVIHLGAQAGVRHSLENPFAYADSNLTGMLTVLEGCRQHGIN  120
             L + D ++++F   Q E V++L+AQAGVR S+ENP +Y DSN+ G + +LE  R+  I+
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLIYASSSSVYGLSDLMPFCAEQRVDHPVSLYAATKKSGELMAHAYSALYGLPTTGLRFF  180
            +LIYASSSSVYG +   PF + + +DHP+SLYAATKKS ELMAH+YS LY LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMAIAKFTRAILAGEPIDVYNQGLLSRDFTYIDDIVDGILAVAELPPRANP  240
            TVYGPWGRPDMA+ KFT+AI+ +++IDVYN+G + RDFTY+DDIV++I  +   P+ +N 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  HWRASQGSLAESAAPYRLLNIGNGQPVRLLDFIEALEQALDKPAIKRMLPMQAGDMHATW  300
            +W +++   + S APY++ NIGN  PVRL++F+EA+E+ L+K A K  + +Q+GD+  T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ADSEPLHTLTGTHPATPLRQGVAEFVRWYLDYYR  334
            A+ + L    +  P T +++GV  FV WYL+YY+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

412) Cpin_1080 in NC_013132


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  308 bits (1155),  Expect = 2e-85, Method: Compositional matrix adjust.
 Identities = 176/347 (51%), Positives = 259/347 (75%), Gaps = 17/347 (4%)

Query  1    MKILVTGAAGFIGYYATKRLAELNFEVVGLDNINEYYDINLKHARLAEAGIDKNKIAYNE  60
            MKIL+TG+AGFIG   +K+L      V+G+D+IN+YY ++LK+ RL   G +        
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE--------  52

Query  61   LILSDKYKNYRFVKLNLDDQENLAALFRNEQFDVVCNLAAQPGVRYSLENPFVYVNSNVV  120
                    N+ F K++L++ ++L+ +F +EQ +VV NLAAQ+GVRYS+ENP  Y++SN+V
Sbjct  53   --------NFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIV  104

Query  121  GFMNILECCRYNKVKHLVYASSSSVYGMSKKVPFEETDNVDNPVSLYAATKKANELFAHT  180
            GFMNILEC R  ++++L+YASSSSVYG +   PF  +DN+D+P+SLYAATKK+NEL AHT
Sbjct  105  GFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHT  164

Query  181  YSHLYGLKTTGLRFFTVYGPWGRPDMAPFLFTNAILKGEAIKVFNNGELSRDFTYVDDVV  240
            YSHLY L TTGLRFFTVYGPWGRPDMA F FT+AI++++AI V+N+G++ RDFTYVDD+V
Sbjct  165  YSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIV  224

Query  241  EGVIRVIMLPDNEKEQKDSGEAQGEFS-GLYKIFNIGNSSPVQLMDFIRCIEKATGKEAI  299
            E++ R++  P + + +  +++++   S + YK++NIGN+SPV+LM+F+  IE+  GKEA 
Sbjct  225  EAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEAR  284

Query  300  LKMLPMQPGDVVSTYADTSELAAYVNYRPSTPLQDGIDRFVSWFKEY  346
             + + +QPGDV  TYA+  +L   ++++P T +QDG+++FV W+ EY
Sbjct  285  KNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEY  331

413) Rru_A3576 in NC_007643


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  306 bits (1146),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 166/335 (50%), Positives = 253/335 (76%), Gaps = 3/335 (0%)

Query  1    MTTLVTGTAGFIGSHVALRLLQEGEQVVGIDCYTPYYDVGLKEARVARLKAFPGFSEHRL  60
            M  L+TGTAGFIGSH+A +L+++G+ V+G+D    YY V+LKE R+  +     F+ +++
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DLADEAGVDAVFRAARPRRVIHLAAQAGVRYSVENPRAYLESNLMGTFSVLEGCRKTGVE  120
             L +  ++  VF   +P  V++LAAQAGVRYS+ENPR+Y++SN++G  ++LE  R   ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVFASTSSVYGANKTQPFSEHQPADHPLTFYAATKRATEMMAHSYANIYQLPSTALRFF  180
            +L++AS+SSVYGAN ++PFS  +  DHPL++YAATK++ E+MAH+Y+++Y+LP+T+LRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFLFTEAMLKGEPIRVFNHGKMVRDFTYIDDIVDGILRASAKIPVAMA  240
            TVYGPWGRPDMALF FT A++++++I V+NHG+M+RDFTY+DDIV++I R   K + +  
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  G-GAAQPDPAGSPVGPFRVYNIGNSQPVELMRYIEVLEGCLGVTAKKEMLPMQLGDVPGT  299
              ++A+PDP GS+ +P++VYNIGN+ PV LM ++E +E  LG  A+K+ + +Q GDVP T
Sbjct  240  EWSGADPDP-GSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPET  298

Query  300  WADVSALAADTGYAPKIGVEEGVRRFVDWYRGYYK  334
             A+V  L  D ++ P   +++GV +FVDWY  YYK
Sbjct  299  YANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

414) F11_18305 in NC_017584


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  306 bits (1146),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 166/335 (50%), Positives = 253/335 (76%), Gaps = 3/335 (0%)

Query  1    MTTLVTGTAGFIGSHVALRLLQEGEQVVGIDCYTPYYDVGLKEARVARLKAFPGFSEHRL  60
            M  L+TGTAGFIGSH+A +L+++G+ V+G+D    YY V+LKE R+  +     F+ +++
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DLADEAGVDAVFRAARPRRVIHLAAQAGVRYSVENPRAYLESNLMGTFSVLEGCRKTGVE  120
             L +  ++  VF   +P  V++LAAQAGVRYS+ENPR+Y++SN++G  ++LE  R   ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVFASTSSVYGANKTQPFSEHQPADHPLTFYAATKRATEMMAHSYANIYQLPSTALRFF  180
            +L++AS+SSVYGAN ++PFS  +  DHPL++YAATK++ E+MAH+Y+++Y+LP+T+LRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFLFTEAMLKGEPIRVFNHGKMVRDFTYIDDIVDGILRASAKIPVAMA  240
            TVYGPWGRPDMALF FT A++++++I V+NHG+M+RDFTY+DDIV++I R   K + +  
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  G-GAAQPDPAGSPVGPFRVYNIGNSQPVELMRYIEVLEGCLGVTAKKEMLPMQLGDVPGT  299
              ++A+PDP GS+ +P++VYNIGN+ PV LM ++E +E  LG  A+K+ + +Q GDVP T
Sbjct  240  EWSGADPDP-GSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPET  298

Query  300  WADVSALAADTGYAPKIGVEEGVRRFVDWYRGYYK  334
             A+V  L  D ++ P   +++GV +FVDWY  YYK
Sbjct  299  YANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

415) Anamo_1185 in NC_018024


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  306 bits (1148),  Expect = 7e-85, Method: Compositional matrix adjust.
 Identities = 176/305 (58%), Positives = 237/305 (78%), Gaps = 1/305 (0%)

Query  10   KILITGAAGFIGFHLAKFMLERGHFVIGLDNLNSYYDPRLKEDRLDMLRAYDNFVFYRAD  69
            KILITG+AGFIG HLAK ++ +GH+VIG+D++N YY   LKEDRL  +   +NF F +  
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKVK  60

Query  70   LKEKPAVDEVFAACKPEYAVNLAAQAGVRYSLENPYAYVDSNLVGFVNVLEACRSYLVKH  129
            L +   +  VF   +PE  VNLAAQAGVRYS+ENP +Y+DSN+VGF+N+LE  R + +++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  130  LLFASSSSVYGGNKTVPFSTEHNTDHPVSLYAATKKANELMAHTYAHLYGIPSTGVRLFT  189
            L++ASSSSVYG+N + PFST +N DHP+SLYAATKK+NELMAHTY+HLY +P+TG+R+FT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  190  VYGPWGRPDMAYFSFTRDILAGVPIKVFNHGSMSRDFTYIDDVLKALYRLIGLVPKPNPD  249
            VYGPWGRPDMA F FT+ I+ + +I V+NHG+M RDFTY+DD++ A+ RL+   + PN +
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  250  WDEKASPISESFAPYKIYNLGNNSPVKLSRFIAVLENCLGKKAQKIYLDMQPGDVIMTYA  309
            W    +  + S+APYK+YN+GNNSPV+L  F+  +EN LGK A+K Y+D+QPGDV  TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  310  DVTDL  314
            +V DL
Sbjct  301  NVDDL  305

416) BN69_2393 in NC_018485


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  306 bits (1148),  Expect = 7e-85, Method: Compositional matrix adjust.
 Identities = 181/338 (54%), Positives = 259/338 (77%), Gaps = 6/338 (1%)

Query  1    MKVLVTGSAGFIGFHTAKALLERGDDVVGFDSVNAYYDPALKMARLAELEKIAQTSGGSY  60
            MK+L+TG+AGFIG H AK L+ +G+ V+G DS+N YY  +LK  RL  + K       ++
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK------ENF  54

Query  61   AFVQANLIDKTALDRCFRAHSFDRVIHLAAQAGVRHSITHPQDYVESNLVAFTNILEMCR  120
            +F + +L +   L + F  +  + V++LAAQAGVR SI +P+ Y++SN+V+F NILE  R
Sbjct  55   TFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSR  114

Query  121  HAETPHLTYASTSSVYGANTQFPFSEHRGVDHPLQFYAATKRANELMAHAYSHLFHLPTT  180
            H +  +L YAS+SSVYGANT  PFS    +DHPL +YAATK++NELMAH+YSHL++LPTT
Sbjct  115  HFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTT  174

Query  181  GLRFFTVYGPWGRPDMALFLFTKNILAGEPIKVFNHGNHTRDFTYVSDIVEGVIRVSDQp  240
            GLRFFTVYGPWGRPDMALF FTK I+ +++I V+NHGN  RDFTYV DIVE++ R+  +P
Sbjct  175  GLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKP  234

Query  241  slpnpdwssddpdpatsNAPFRILNIGSNAPVKLTEYIDALEERLGRKAIKELLPLQPGD  300
            + PN +WS+ DPDP++S AP+++ NIG+N+PV+L E+++A+E++LG+ A K+ + LQPGD
Sbjct  235  ASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGD  294

Query  301  VPDTYADVSELLKCTGYKPATPVREGVANFVEWYRCYY  338
            VP+TYA+V +L++  ++KP T +++GV +FV+WY  YY
Sbjct  295  VPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

417) PSEBR_a2943 in NC_015379


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  306 bits (1147),  Expect = 9e-85, Method: Compositional matrix adjust.
 Identities = 178/333 (54%), Positives = 246/333 (74%), Gaps = 13/333 (3%)

Query  1    MKVLVTGVAGFIGFHTAKRLCSDGHQVIGIDNLNSYYSVELKQARLAQLTECRDFRFQLL  60
            MK+L+TG AGFIG H AK+L  +GH VIG+D++N YYSV LK+ RL  +    +F F+ +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DVADKQALLELFVEHAFDQVVHLAAQAGVRYSIDNPDVYAQSNLVGFLNILEACRAHRPA  120
             + + + L  +FV++  + VV+LAAQAGVRYSI+NP  Y +SN+VGF+NILE  R     
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLIFASSSSVYGLNDRLPYATTDPVDQPVSFYAATKRANELMAHAYSHLYGIPTTGLRFF  180
            +LI+ASSSSVYG N   P++T+D +D+P+S+YAATK++NELMAH+YSHLY +PTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMAPFKFTDAILNGRTIDVYNDGAMSRDFTYIDDIVEGLVRLIPLPPTDET  240
            TVYGPWGRPDMA FKFT AI+N+++IDVYN+G M RDFTY+DDIVE++ RL+  P++ + 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  G------------VRNKVYNIGFGSPVKLLQFIECIEEALGIRAIKNFLPLQSGDVVNTW  288
                            KVYNIG  SPV+L++F+E IE+ LG  A KN++ LQ+GDV +T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  289  ADTRELEERVGFRPQVAVPVGVQSFVDWYRDYY  321
            A+  +L   ++F+P+ ++  GV+ FVDWY +YY
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

418) Desor_5182 in NC_016584


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  305 bits (1143),  Expect = 2e-84, Method: Compositional matrix adjust.
 Identities = 181/337 (54%), Positives = 258/337 (77%), Gaps = 12/337 (3%)

Query  15   FVTGGAGFIGYFLSKKLLELGCRVIAIDNMNDYYDVNLKESRLKQLEGQEGFTFIRGDIS  74
            ++TG AGFIG  L+KKL+  G  VI++D++NDYY V+LKE RLK + G+E FTF +  + 
Sbjct  4    LITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKVKLE  62

Query  75   DKKTVMKVFAEFKPQIVVNLAAQAGVRYSIENPDSYIQSNMIGFFNVLEACRHNPVEHLV  134
            +   + KVF + +P++VVNLAAQAGVRYSIENP +YI+SN++GF N+LE  RH  +++L+
Sbjct  63   NYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNLI  122

Query  135  YASSSSVYGANTKVPFSTEDKVDNPVSLYAATKKSNELMAHTYSQLFGIPSTGLRFFTVY  194
            YASSSSVYGANT  PFST D++D+P+SLYAATKKSNELMAHTYS+L+ +P+TGLRFFTVY
Sbjct  123  YASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTVY  182

Query  195  GPMGRPDMAYFGFTQKIFKGEIIKVFNFGDCYRDFTYIDDIVESVARILCNPPAKK----  250
            GP GRPDMA F FT+ I +++ I V+N G+  RDFTY+DDIVE+++R++ +P++ +    
Sbjct  183  GPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEWS  242

Query  251  -VDEDSILNGIQYAVYNIGNNQPEHLMDYIAALEKALSKAVGRVVVAEKEFLPMQPGDVK  309
              D D+  +   Y VYNIGNN P +LM+++ A+E+ L+K       A K+++ +QPGDV 
Sbjct  243  GADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKE------ARKNYMDLQPGDVP  296

Query  310  ATYSDSSPLVRDFDFKPGMSIEEGLQRFADWYVDYYQ  346
             TY++   L RD+DFKP  +I++G+++F DWY++YY+
Sbjct  297  ETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

419) BF638R_3294 in NC_016776


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  305 bits (1142),  Expect = 2e-84, Method: Compositional matrix adjust.
 Identities = 183/350 (53%), Positives = 260/350 (75%), Gaps = 30/350 (8%)

Query  1    MKALVTGAAGFIGSYTVKALVAQGCEVVGLDNINSYYDVQLKYDRLADTGITKESIEKDI  60
            MK L+TG+AGFIGS   K L+ QG  V+G+D+IN YY V LK DRL   +I KE+     
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRL--KSIGKEN-----  53

Query  61   LLPSAKYPSYRFIKMDLTDREGLTNLFKDEHFDIVVNLAAQAGVRYSIENPYAYIESNIV  120
                     + F K+ L + ++L+++F DE+ ++VVNLAAQAGVRYSIENP +YI+SNIV
Sbjct  54   ---------FTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIV  104

Query  121  GFLNLLECCRHYPVNHLVYASSSSIYGLNDKVPYAETDKADSPVSLYAATKKSNELMAHA  180
            GF+N+LEC RH+ +++L+YASSSS+YG N   P++ +D+ D P+SLYAATKKSNELMAH+
Sbjct  105  GFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHT  164

Query  181  YSKLYSIPTTGVRFFTVYGPWGRPDMAPCLFMKAILNGDPIKVFNNGQMRRDFTYIDDII  240
            YS LY++PTTG+RFFTVYGPWGRPDMA   F KAI+N+++I V+N+G+M RDFTY+DDI+
Sbjct  165  YSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIV  224

Query  241  AGLMKIIAHPS--------ADP------IPFYIYNIGNSAPVELMDFISVIEKTAGKTAI  286
             ++ +++  P+        ADP       P+ +YNIGN++PV LM+F+  IE+  GK A 
Sbjct  225  EAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEAR  284

Query  287  KQMMGMQPGDVVCTYADTGRLEKDFGYKPSTSIEEGIQKFYDWYVGYFNK  336
            K+ M++QPGDV  TYA+ + L +D+++KP T+I++G++KF DWY+ Y++K
Sbjct  285  KNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

420) BF3259 in NC_003228


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  305 bits (1142),  Expect = 2e-84, Method: Compositional matrix adjust.
 Identities = 183/350 (53%), Positives = 260/350 (75%), Gaps = 30/350 (8%)

Query  1    MKALVTGAAGFIGSYTVKALVAQGCEVVGLDNINSYYDVQLKYDRLADTGITKESIEKDI  60
            MK L+TG+AGFIGS   K L+ QG  V+G+D+IN YY V LK DRL   +I KE+     
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRL--KSIGKEN-----  53

Query  61   LLPSAKYPSYRFIKMDLTDREGLTNLFKDEHFDIVVNLAAQAGVRYSIENPYAYIESNIV  120
                     + F K+ L + ++L+++F DE+ ++VVNLAAQAGVRYSIENP +YI+SNIV
Sbjct  54   ---------FTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIV  104

Query  121  GFLNLLECCRHYPVNHLVYASSSSIYGLNDKVPYAETDKADSPVSLYAATKKSNELMAHA  180
            GF+N+LEC RH+ +++L+YASSSS+YG N   P++ +D+ D P+SLYAATKKSNELMAH+
Sbjct  105  GFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHT  164

Query  181  YSKLYSIPTTGVRFFTVYGPWGRPDMAPCLFMKAILNGDPIKVFNNGQMRRDFTYIDDII  240
            YS LY++PTTG+RFFTVYGPWGRPDMA   F KAI+N+++I V+N+G+M RDFTY+DDI+
Sbjct  165  YSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIV  224

Query  241  AGLMKIIAHPS--------ADP------IPFYIYNIGNSAPVELMDFISVIEKTAGKTAI  286
             ++ +++  P+        ADP       P+ +YNIGN++PV LM+F+  IE+  GK A 
Sbjct  225  EAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEAR  284

Query  287  KQMMGMQPGDVVCTYADTGRLEKDFGYKPSTSIEEGIQKFYDWYVGYFNK  336
            K+ M++QPGDV  TYA+ + L +D+++KP T+I++G++KF DWY+ Y++K
Sbjct  285  KNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

421) BF3440 in NC_006347


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  305 bits (1142),  Expect = 2e-84, Method: Compositional matrix adjust.
 Identities = 183/350 (53%), Positives = 260/350 (75%), Gaps = 30/350 (8%)

Query  1    MKALVTGAAGFIGSYTVKALVAQGCEVVGLDNINSYYDVQLKYDRLADTGITKESIEKDI  60
            MK L+TG+AGFIGS   K L+ QG  V+G+D+IN YY V LK DRL   +I KE+     
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRL--KSIGKEN-----  53

Query  61   LLPSAKYPSYRFIKMDLTDREGLTNLFKDEHFDIVVNLAAQAGVRYSIENPYAYIESNIV  120
                     + F K+ L + ++L+++F DE+ ++VVNLAAQAGVRYSIENP +YI+SNIV
Sbjct  54   ---------FTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIV  104

Query  121  GFLNLLECCRHYPVNHLVYASSSSIYGLNDKVPYAETDKADSPVSLYAATKKSNELMAHA  180
            GF+N+LEC RH+ +++L+YASSSS+YG N   P++ +D+ D P+SLYAATKKSNELMAH+
Sbjct  105  GFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHT  164

Query  181  YSKLYSIPTTGVRFFTVYGPWGRPDMAPCLFMKAILNGDPIKVFNNGQMRRDFTYIDDII  240
            YS LY++PTTG+RFFTVYGPWGRPDMA   F KAI+N+++I V+N+G+M RDFTY+DDI+
Sbjct  165  YSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIV  224

Query  241  AGLMKIIAHPS--------ADP------IPFYIYNIGNSAPVELMDFISVIEKTAGKTAI  286
             ++ +++  P+        ADP       P+ +YNIGN++PV LM+F+  IE+  GK A 
Sbjct  225  EAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEAR  284

Query  287  KQMMGMQPGDVVCTYADTGRLEKDFGYKPSTSIEEGIQKFYDWYVGYFNK  336
            K+ M++QPGDV  TYA+ + L +D+++KP T+I++G++KF DWY+ Y++K
Sbjct  285  KNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

422) PSF113_2845 in NC_016830


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  304 bits (1139),  Expect = 4e-84, Method: Compositional matrix adjust.
 Identities = 176/334 (53%), Positives = 245/334 (74%), Gaps = 13/334 (3%)

Query  1    MRVLVTGVAGFIGFHTAKRLCNDGHQVIGIDNLSSYYSVELKHARLAQLIECRDFHFQLL  60
            M++L+TG AGFIG H AK+L ++GH VIG+D+++ YYSV LK+ RL   I   +F F+ +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKS-IGKENFTFNKV  59

Query  61   DVEDKQALLELFAEHAFDHVVHLAAQAGVRYSIDNPDVYAQSNLVGFLNVLEACRAQRPA  120
             +E+ + L  +F ++  + VV+LAAQAGVRYSI+NP  Y +SN+VGF+N+LE  R     
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVFASSSSVYGLNNRLPYATTDPVDQPVSFYAATKRANELMAHAYSHLYGIPTTGLRFF  180
            +L++ASSSSVYG N   P++T+D +D+P+S+YAATK++NELMAH+YSHLY +PTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMAPFKFTDAILNGRAIDVYNDGAMSRDFTYIDDIVEGLVRLIPLPPTNGT  240
            TVYGPWGRPDMA FKFT AI+N++AIDVYN+G M RDFTY+DDIVE++ RL+  P++   
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  G------------VRNKVYNIGFGSPVKLLQFIECIEEALGIPALKRFLPLQPGDVVDTW  288
                            KVYNIG  SPV+L++F+E IE+ LG  A K ++ LQPGDV +T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  289  ADTRELEDHVGFRPQVAVPVGVQSFVDWYRAYYH  322
            A+  +L  +++F+P+ ++  GV+ FVDWY  YY 
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

423) lpsL in NC_020059


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  304 bits (1139),  Expect = 4e-84, Method: Compositional matrix adjust.
 Identities = 177/334 (53%), Positives = 249/334 (75%), Gaps = 2/334 (0%)

Query  1    MRYLITGTAGFIGFHLARRLLDEGHFVVGFDGMTPYYDVKLKEKRTAILARSNGFKAVTG  60
            M+ LITGTAGFIG HLA++L+ +GH+V+G D++  YY V LKE R   +++ N F     
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKEN-FTFNKV  59

Query  61   MLEDKAALDRAAELAEPDVIVHLAAQAGVRYSLENPRSYVDSNLVGSFNILELARNLQPK  120
             LE+   L +     +P+V+V+LAAQAGVRYS+ENPR+Y+DSN+VG  NILE +R+++ +
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLLLASTSSVYGANEKIPFAESDKADEQMTIYAATKKSMELMAHSYAHLFNVPTTAFRFF  180
            +L+ AS+SSVYGAN   PF+ SD+ D+ +++YAATKKS ELMAH+Y+HL+N+PTT++RFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFVDAIKNDRPIEIYGEGKMSRDFTYIDDLVEGIVRLIGVIPSEEN  240
            TVYGPWGRPDMALFKF  AI ND++I++Y +G+M RDFTY+DD+VE+I RL+   P+  N
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVK-KPASPN  238

Query  241  RIVSETVIDTLSRNAPFRVVNVGGGQPVGLMTFVETIETMLGKRAIRKMLPMQPGDVHNT  300
            +  S +  D  S  AP++V N+G   PV LM FVE+IE  LGK A ++ + +QPGDV +T
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPET  298

Query  301  YAVPDLLVALTGFKPQIEVDEGVKRFVEWYQENY  334
            YA  D L    +FKP+  +++GV++FV+WY E Y
Sbjct  299  YANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

424) Spica_1469 in NC_015732


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  304 bits (1139),  Expect = 4e-84, Method: Compositional matrix adjust.
 Identities = 175/347 (51%), Positives = 254/347 (74%), Gaps = 31/347 (8%)

Query  5    LITGAAGFIGFHLSKRLIEQGHTVIGLDNINDYYDITLKYARIAQLGIKKDEAEKYNQLV  64
            LITG+AGFIG HL+K+LI QGH VIG+D+INDYY ++LK  R+  +G             
Sbjct  4    LITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK------------  51

Query  65   KSTKYHTFSFIRLNLEDYNNLIDIFNQYNFDCVINLAAQAGVRYSIDHPFSYVQSNLVGF  124
                 + F+F +++LE+Y++L  +F + + + V+NLAAQAGVRYSI++P +Y++SN+VGF
Sbjct  52   -----ENFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGF  106

Query  125  LSILEACRHFKIPHLIYASSSSVYGMNSKYPFSEDDPVDHPVSLYAATKRANELMAHTYS  184
            ++ILE  RHF+I +LIYASSSSVYG N+  PFS  D +DHP+SLYAATK++NELMAHTYS
Sbjct  107  MNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYS  166

Query  185  HLYGFRTTGLRFFTVYGPWGRPDMAYFKFARSIMEEKPIEVYNNGDMYRDFTYIDDIIDG  244
            HLY + TTGLRFFTVYGPWGRPDMA FKF+++I+++++I+VYN+G+M RDFTY+DDI+++
Sbjct  167  HLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEA  226

Query  245  IVCVSNKNKENN--------------ELFKIYNIGNNNPEKLSKLITVLEESLGKKAQKI  290
            I  + +K    N                +K+YNIGNN+P +L  ++  +E+ LGK A+K 
Sbjct  227  ISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKN  286

Query  291  YLPMQPGDVYRTAADITALSRDCNWQPHTSLKTGIKSFAKWFLSFYN  337
            Y+ +QPGDV  T A++  L RD + +P+T+++ G++ F  W+L +Y+
Sbjct  287  YMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

425) TREPR_2368 in NC_015578


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  303 bits (1134),  Expect = 1e-83, Method: Compositional matrix adjust.
 Identities = 176/354 (50%), Positives = 260/354 (74%), Gaps = 21/354 (5%)

Query  1    MNYIVTGAAGFIGFYVTKKLLEQGHQVLGIDSLNDYYPVFLKHDRLKELGIVAGDVDYGV  60
            M+ ++TG+AGFIG  ++KKL+ QGH V+G+DS+NDYY+V LK+DRLK +G          
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK---------  51

Query  61   PLGSHSFQLFKFVQLKLEDKEALASLVNNYIQECGFIDRIIHLAAQAGVRYSIQNPDAYI  120
                   + F F ++KLE+ + L+ +   +++E    + +++LAAQAGVRYSI+NP +YI
Sbjct  52   -------ENFTFNKVKLENYDDLSKV---FVDEQP--EVVVNLAAQAGVRYSIENPRTYI  99

Query  121  TSNIAGFLNILELCRSLAVPHLVYASSSSVYGMNSKRPFSVQDQVDHPVSLYAATKRSNE  180
             SNI GF+NILE  R + + +L+YASSSSVYG N+ +PFS  D++DHP+SLYAATK+SNE
Sbjct  100  DSNIVGFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNE  159

Query  181  LMAHTYAHLFNIPVTGLRFFTVYGPWGRPDMAYYKFSLAISKGEPIDVYNNGEMLRDFTY  240
            LMAHTY+HL+N+P TGLRFFTVYGPWGRPDMA +KF+ AI ++++IDVYN+G+M+RDFTY
Sbjct  160  LMAHTYSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTY  219

Query  241  IDDITDGVLKASERLPSPAPGFDPLKSGPAESSAPFRLYNLGNNRPEKLKNFIETLETAL  300
            +DDI +++ +   + +SP        ++P+ S AP+++YN+GNN P +L +F+E++E  L
Sbjct  220  VDDIVEAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKL  279

Query  301  GTKAVKRYLPMQEGDVAATEADIEDTRRDLDWEPRTDINAGLKAFAEWFNGYYN  354
            G  A K Y+ +Q GDV+ T A+++D  RD+D  P T I+ G++ F +W+  YY+
Sbjct  280  GKEARKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

426) SpiGrapes_1571 in NC_016633


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  303 bits (1135),  Expect = 8e-84, Method: Compositional matrix adjust.
 Identities = 183/333 (55%), Positives = 246/333 (74%), Gaps = 13/333 (3%)

Query  15   LITGSAGFVGFHLSKRLLDLGCTVIGFDNLNDYYDVSLKQARLDILLSASSSFTFVKGDL  74
            LITG+AGF+G HL+K+L+  G  VIG D++NDYY VSLK+ RL  +  +  +FTF K  L
Sbjct  4    LITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI--GKENFTFNKVKL  61

Query  75   ADKVAVDGLFATYSPSVVVNLAAQAGVRYSIDNPYAYLQSNLVGFLNILEACRHNPVSHL  134
             +   +  +F    P VVVNLAAQAGVRYSI+NP +Y++SN+VGF+NILE  RH  + +L
Sbjct  62   ENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNL  121

Query  135  VYASSSSVYGMNDKIPFSTADKVDSPVSLYAATKKSNELMAHCYTHLYGIPSTGLRFFTV  194
            +YASSSSVYG N   PFST+D++D P+SLYAATKKSNELMAH Y+HLY +P+TGLRFFTV
Sbjct  122  IYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTV  181

Query  195  YGPYGRPDMAYFSFSKKIMEGEAIKVFNNGDMYRDFTYIDDIVKGMENMLCNPP------  248
            YGP GRPDMA F F+K I++++AI V+N+G+M RDFTY+DDIV ++  ++ +P+      
Sbjct  182  YGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEW  241

Query  249  --LENEHG---DRYKIYNIGNNKPEKLMYFIETLEQCLGKKAVKEYLPMQMGDVYQTYAD  303
               + + G     YK+YNIGNN P +LM F+E++E+ LGK A K+Y+ +Q GDV +TYA+
Sbjct  242  SGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYAN  301

Query  304  VSDLEADFDFKPNTPLSDGLGSFVSWFKEYYTH  336
            V DL  D+DFKP+T + DG+  FV W+ EYY  
Sbjct  302  VDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

427) PSEEN3360 in NC_008027


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  303 bits (1134),  Expect = 9e-84, Method: Compositional matrix adjust.
 Identities = 173/333 (52%), Positives = 252/333 (76%), Gaps = 12/333 (3%)

Query  1    MPVLITGAAGFIGFHLARRLCQEGLEVVGIDNLNAYYSVELKHARLKQLAEWPNLRFVPL  60
            M +LITG+AGFIG HLA++L ++G  V+G+D++N YYSV LK+ RLK ++   N+ F  +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DIadqdallqlfaahafTEVIHLAAQAGVRYSLDNPGVYGQSNLVGFLNMLEACRQYRPR  120
             + + D L ++F  +    V++LAAQAGVRYS++NP  Y +SN+VGF+N+LE  R++  +
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGANAKLPFCIEDPVEQPVSLYAASKRANELMAHSYAHLYQIPMTGLRFF  180
            +L+YASSSSVYGAN+  PF   D +++P+SLYAA+K++NELMAH+Y+HLY++P TGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTQAMLEGRPIDLYNHGRMGRDFTYIDDIVESIRRLRVKP-----  235
            TVYGPWGRPDMALFKFT+A++++++ID+YNHG M RDFTY+DDIVE+I RL  KP     
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  236  ------PKASEGQPPWQLFNIGRGEPVELLSFVECLEDALGIKAQRNYLPFQPGDVHQTW  289
                  P ++ + +P +++NIG   PV L+ FVE +E+ LG  A++NY+ +QPGDV +T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  290  ADVSSLAHWIDFSPSTSLEHGVRAFVGWYRDFY  322
            A+V  L + IDF P T++++GV  FV+WY ++Y
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

428) Cphy_1211 in NC_010001


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  302 bits (1132),  Expect = 1e-83, Method: Compositional matrix adjust.
 Identities = 182/326 (56%), Positives = 250/326 (77%), Gaps = 12/326 (3%)

Query  15   LVTGTAGFIGFHLAKMLLDQGATVVGYDNINDYYDTKFKYARLNILEKYNNFTFMKGDLA  74
            L+TGTAGFIG HLAK L+ QG  V+G D+INDYY   +K  RL+ + K +NFTF K  L 
Sbjct  4    LITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKVKLE  62

Query  75   DKQAIDKLFIECKPQIVVNLAAQAGVRYSIEKPETYINSNIIGFFNILEACRHYGVEHLI  134
            + + + K+F++ +P++VVNLAAQAGVRYSIE+P TYI+SNI+GF NILE  RH+ +++LI
Sbjct  63   NYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNLI  122

Query  135  FASSSSVYGANQKVPFSTYDKTDTPVSLYAATKKSNELMAYPYSHLYGIPTTGLRFFTVY  194
            +ASSSSVYGAN   PFST D+ D P+SLYAATKKSNELMA  YSHLY +PTTGLRFFTVY
Sbjct  123  YASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTVY  182

Query  195  GPYGRPDMAYFSFTKSIMESKPIKIFNNGDMYRDFTYIDDIVKGIEQILCNP--------  246
            GP GRPDMA F FTK+I++ ++I ++N+G+M RDFTY+DDIV +I +++ +P        
Sbjct  183  GPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEWS  242

Query  247  ---PEQDENKIKYKIYNIGNNKPVKLMDCIELLEKYIGKKAIKEYLPMQLGEVYQTYADL  303
               P+ + +   YK+YNIGNN PV+LM+ +E +E+ +GK A K+Y+ +Q G+V +TYA++
Sbjct  243  GADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYANV  302

Query  304  CDLEEDFHFIPSTSIETGLSNFVEWY  329
             DL  D++F P T+I+ G+++FV+WY
Sbjct  303  DDLFRDIDFKPETTIQDGVNKFVDWY  328

429) P9301_13991 in NC_009091


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  302 bits (1130),  Expect = 2e-83, Method: Compositional matrix adjust.
 Identities = 179/335 (54%), Positives = 252/335 (76%), Gaps = 5/335 (1%)

Query  8    ILITGAAGFIGSALAIKLLEENNHVIGIDNINNYYSTSFKKERLSNIIKSPNSSKYWNFH  67
            ILITG+AGFIGS LA KL+ + + VIG+D+IN+YYS S+K +RL +I K         F+
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKEN-----FTFN  57

Query  68   KISIENKNQIFNIFEKYRPKIVVNLAAQAGVRYSLENPEAYIKSNLVGFFNILEACKSFD  127
            K+ +EN +++ ++F   +P +VVNLAAQAGVRYS+ENP +YI SN+VGF NILE  + F+
Sbjct  58   KVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFN  117

Query  128  VENFIYASSSSVYGGNKKVPFKENDSSNHPISLYAATKRSNELMAHSYSHLYDIPSIGLR  187
            ++N+IYASSSSVYG+N   PF  +D+ +HP+SLYAATK+SNELMAH+YSHLY++P+ GLR
Sbjct  118  IQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLR  177

Query  188  FFTVYGPWGRPDMAPMIFANAIMNQLPINIFNFGKMKRDFTYIDDVVESIKRCCFKPATV  247
            FFTVYGPWGRPDMA   F++AI+N+ +I+++N G+M RDFTY+DD+VE+I R   KPA+ 
Sbjct  178  FFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASP  237

Query  248  SNTFDKFDPENSCSFAKHRIFNVGNSKPVELEIFIELLEDALGKKAIKKYDELQKGDVIS  307
            ++     DP+ + S+A  +++N+GN+ PV L  F+E +E+ LGK A K+Y +LQ GDV  
Sbjct  238  NKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPE  297

Query  308  TLSDTSLLTKWIDFTPSTSIQDGILYFAKWFENYY  342
            T ++   L + IDF P T+IQDG+  F  W+ +YY
Sbjct  298  TYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

430) Rvan_0185 in NC_014664


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  302 bits (1130),  Expect = 2e-83, Method: Compositional matrix adjust.
 Identities = 172/334 (52%), Positives = 246/334 (74%), Gaps = 12/334 (3%)

Query  1    MTILVTGAAGFIGFHVAKALLARGEAVVGFDNINSYYDPSLKHARLEHLAGERAFTFVKA  60
            M IL+TG+AGFIG H+AK L+ +G+ V+G D+IN YY  SLK+ RL  ++ E  FTF K 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKV  59

Query  61   DLADADAVRDTFARFEPRRVVHLAAQAGVRYSLQNPQAYLDSNVIGLLNILEGCRAHRPE  120
             L + D +   F   +P  VV+LAAQAGVRYS++NP++Y+DSN++G++NILE  R    +
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVFASSSSVYGLNTKLPFAEADKTDAPASLYGATKKSGELMAHAYAHLFNLPMTGLRFF  180
            +L++ASSSSVYG NT  PF+ +D+ D P SLY+ATKKS ELMAH+Y+HL+NLP TGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMSPIIFTKAIIEGRPIDLFNNGDHARDFTYIDDIVDGVLRVVDMT-----  235
            TVYGPWGRPDM+ + FTKAI+++++ID++N+G+  RDFTY+DDIV+++ R+V        
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  236  ------PVAGASGPAFEIYNIGHNEPVPLNDFVACIEDAIGKKAIRNLLPMQPGDVPETH  289
                  P +G+S +++ +YNIG+N PV L +FV  IE+ +GK A +N + +QPGDVPET 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  290  ADIERLAAATGFRPTTPIEVGIPRFVRWYRDYYQ  323
            A+++ L    +F+P T I+ G+ +FV WY +YY+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

431) Saro_3151 in NC_007794


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  302 bits (1130),  Expect = 2e-83, Method: Compositional matrix adjust.
 Identities = 165/334 (50%), Positives = 249/334 (75%), Gaps = 8/334 (2%)

Query  1    MKVLVTGAAGFIGYSLATRLLARGDEVIGVDIVNDYYDPRLKEARLARLAQQGGGRFTFL  60
            MK+L+TG+AGFIG  LA +L+ +G+ VIGVD +NDYY   LKE RL  ++++    FTF 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKEN---FTFN  57

Query  61   RTDFADYPALTAALEGAHFDRIVHLGAQAGVRYSIENPHAYVQSNLVGHVNLLEVARHRG  120
            +  + +Y  L+  + + + + +V+L+AQAGVRYSIENP++Y++SN+VG +N+LE +RH  
Sbjct  58   KVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFN  117

Query  121  VEHMVYASSSSVYGGNTKLPFSVDDRVDHPLSLYAATKKADELMSETYAHLYRLPLTGLR  180
            +++++YASSSSVYG+NT  PFS  D +DHPLSLYAATKK++ELM++TY+HLY LP TGLR
Sbjct  118  IQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLR  177

Query  181  FFTVYGPWGRPDMMMWLFTRAILAGEPIQVFNHGDMYRDFTYVDDIVSGVVACLDNPPLD  240
            FFTVYGPWGRPDM +  FT+AI+ +++I+V+NHG+M RDFTYVDDIV ++   + +P+  
Sbjct  178  FFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASP  237

Query  241  D-----GAPKAGGSLKPHRLYNIGNHKSEHLMKVIAILEAELGRKAEMRMLPMQPGDVRQ  295
            +     + P +G+S  P ++YNIGN+ + +LM  +  +E  LG+ A    + +QPGDV +
Sbjct  238  NKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPE  297

Query  296  SFADIDAISGDLGYRPTTGIETGVPNFVRWYKDY  329
            ++A++D +  D++++P T I+ GV +FV WY +Y
Sbjct  298  TYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEY  331

432) GFO_0148 in NC_008571


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  301 bits (1129),  Expect = 2e-83, Method: Compositional matrix adjust.
 Identities = 183/350 (53%), Positives = 257/350 (74%), Gaps = 30/350 (8%)

Query  1    MKILVTGAAGFIGFHLCEKLVKENHEVIGLDNINDYYSQDLKLARLKELGIKSKESNKFN  60
            MKIL+TG+AGFIG HL  KL+K+ H VIG+D+INDYYS  LK  RLK +G   KE     
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG---KE-----  52

Query  61   SKCLSTIYPNFSFFRMNLEDRDSLPELFKKENFDIVCNLAAQAGVRYSLENPEAYIDSNL  120
                     NF+F +++LE+ D L+ +F  E+ ++V NLAAQAGVRYS+ENP +YIDSN+
Sbjct  53   ---------NFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNI  103

Query  121  VGFANIIECCRNHHIKHLIYASSSSVYGQNKKIPFSTDDRVDEPISLYAATKRSNEIMAY  180
            VGF NI+EC R+ +I++LIYASSSSVYG N   PFST D +D+P+SLYAATK+SNE+MA 
Sbjct  104  VGFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAH  163

Query  181  TYSHLYKLPTTGLRFFTVYGPWGRPDMAMFLFADAITNGKVLKVFNEGNLERDFTFVDDI  240
            TYSHLY+LPTTGLRFFTVYGPWGRPDMA+F F+ AI N++ + V+N+GN+ RDFT+VDDI
Sbjct  164  TYSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDI  223

Query  241  VNGVMAVVNRVPSEKD-------------SKYNLFNIGNSKPINLLNFIKEIEDQLGLSA  287
            V+++  +V++ +S +              + Y+++NIGN+ P+ L++F+  IE++LG  A
Sbjct  224  VEAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEA  283

Query  288  EKQLMPMQPGDVDKTWADSKPLMENFDYQPSIEIKEGVQKYLQWFKMYYN  337
             K+ M +QPGDV  T A+   L  ++D++P   I++GV+K+++W+  YY+
Sbjct  284  RKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

433) RB2501_13454 in NC_013222


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  301 bits (1128),  Expect = 3e-83, Method: Compositional matrix adjust.
 Identities = 181/350 (52%), Positives = 253/350 (73%), Gaps = 27/350 (7%)

Query  1    MKILVTGAAGFIGFFATRLLAEKGHHVVGLDNINDYYDPELKFGRLRELGIDRGSAETFG  60
            MKIL+TG+AGFIG   ++ L  +GH V+G+D+INDYY   LK +RL+ +G +        
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE--------  52

Query  61   QETESSTLTNVAFVRLNLEDREELRALFERHSFDAVCHLAAQAGVRYSLENPEAYIDSNI  120
                     N +F +++LE+ ++L  +F  +  + V +LAAQAGVRYS+ENP +YIDSNI
Sbjct  53   ---------NFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNI  103

Query  121  VGFLNILENCRHCGIGHLVYASSSSVYGQNEKIPFETTDRVDHPISLYAATKKSNELMAH  180
            VGF+NILE  RH  I +L+YASSSSVYG N   PF T+D +DHP+SLYAATKKSNELMAH
Sbjct  104  VGFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAH  163

Query  181  TYSHLYGFATTGLRFFTVYGPWGRPDMALFLFTRAILEGRPIQVFNNGEQERDFTYIDDI  240
            TYSHLY ++TTGLRFFTVYGPWGRPDMALF FT+AI+++++I+V+N+G+  RDFTY+DDI
Sbjct  164  TYSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDI  223

Query  241  AEGVVRVLEDDLSGRRDHR----------EKYKLYNIGNGSPVKLMDFIEAIEKHTGKTA  290
             E++ R++    S  ++              YK+YNIGN SPV+LM+F+EAIE+  GK A
Sbjct  224  VEAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEA  283

Query  291  IREMLPAQPGDVTRTWADTGGLQKDYGYRAGSDLDDGIGKFVDWYVNYYS  340
             ++ +  QPGDV  T A+ ++L +D ++++ + ++DG+ KFVDWY++YY 
Sbjct  284  RKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

434) NATL1_03951 in NC_008819


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  300 bits (1125),  Expect = 5e-83, Method: Compositional matrix adjust.
 Identities = 182/338 (54%), Positives = 255/338 (76%), Gaps = 5/338 (1%)

Query  9    TILVTGAAGFIGAALVKALLNLDFKVIGIDNLNDYYSTSLKRSRLTEIEKVSTVNGEWFF  68
             IL+TG+AGFIG+ L K L++ +  VIG+D++NDYYS SLK  RL  I K      +  F
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-----ENFTF  56

Query  69   YEIPIEDNKVLQDIINRYNPQVFVHLAAQAGVRYSITNPAAYIQSNLVGFANVLEGCRQN  128
              + +E+   L  ++   +P+V V+LAAQAGVRYSI NP +YI+SN+VGF N+LE  R+ 
Sbjct  57   NKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHF  116

Query  129  QIPHLIYASSSSVYGGNKNLPFYEEQAVNHPVSLYAATKKSNELMAHTYSHLYDLPTTGL  188
            +I +LIYASSSSVYG+N + PF   + ++HP+SLYAATKKSNELMAHTYSHLY+LPTTGL
Sbjct  117  NIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGL  176

Query  189  RFFTVYGPWGRPDMAPMIFARSILNNEPIQVFNYGKMQRDFTYIDDVVEGIIRCCFKKAS  248
            RFFTVYGPWGRPDMA   F+++I+N+++I+V+N G+M RDFTY+DD+VE+I R   K AS
Sbjct  177  RFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPAS  236

Query  249  IDDEFNPLVPNPSTSSAPYRIFNIGNSRPTQLTYFIELLEKNLGKKAIKNFQPMQPGDVV  308
             + E +   P+P++S APY+++NIGN+ P +L  F+E +E++LGK A KN+  +QPGDV 
Sbjct  237  PNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVP  296

Query  309  STAARMDLLNSWVDYKPITSIENGIKLFSEWYLDYFKN  346
             T A +D L   +D+KP T+I++G++ F +WYL+Y+K+
Sbjct  297  ETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

435) PMN2A_1681 in NC_007335


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  300 bits (1125),  Expect = 5e-83, Method: Compositional matrix adjust.
 Identities = 181/338 (54%), Positives = 254/338 (76%), Gaps = 5/338 (1%)

Query  9    TILVTGAAGFIGAALVKALLNLNFKVIGIDNLNDYYSTSLKRSRLTEIEKVSTVNGEWFF  68
             IL+TG+AGFIG+ L K L++    VIG+D++NDYYS SLK  RL  I K      +  F
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-----ENFTF  56

Query  69   YEIPIEDNKVLQDIINRYNPQVFVHLAAQAGVRYSITNPAAYIQSNLVGFANVLEGCRQN  128
              + +E+   L  ++   +P+V V+LAAQAGVRYSI NP +YI+SN+VGF N+LE  R+ 
Sbjct  57   NKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHF  116

Query  129  QIPHLIYASSSSVYGGNKNLPFYEEQAVNHPVSLYAATKKSNELMAHTYSHLYDLPTTGL  188
            +I +LIYASSSSVYG+N + PF   + ++HP+SLYAATKKSNELMAHTYSHLY+LPTTGL
Sbjct  117  NIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGL  176

Query  189  RFFTVYGPWGRPDMAPMIFARSILNNEPIQVFNYGKMQRDFTYIDDVVEGIIRCCFKKAS  248
            RFFTVYGPWGRPDMA   F+++I+N+++I+V+N G+M RDFTY+DD+VE+I R   K AS
Sbjct  177  RFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPAS  236

Query  249  IDDDFNPLVPNPSTSSAPYRIFNIGNSRPTQLTYFIELLEKNLGKKAIKNFQPMQPGDVV  308
             + + +   P+P++S APY+++NIGN+ P +L  F+E +E++LGK A KN+  +QPGDV 
Sbjct  237  PNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVP  296

Query  309  STAARMDLLNSWVDYKPITSIENGIKLFSEWYLDYFKN  346
             T A +D L   +D+KP T+I++G++ F +WYL+Y+K+
Sbjct  297  ETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

436) NH8B_4033 in NC_016002


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  300 bits (1125),  Expect = 5e-83, Method: Compositional matrix adjust.
 Identities = 170/333 (52%), Positives = 247/333 (75%), Gaps = 13/333 (3%)

Query  1    MKVLVTGAAGFIGRAVCEKLLDKGGVDVVAVDNLNDYYAVELKHARLATLQSRPGFAFHR  60
            MK+L+TG+AGFIG  +  KL+ K G  V++VD++NDYY+V LK+ RL ++ ++  F+F++
Sbjct  1    MKILITGTAGFIGSHLAKKLI-KQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNK  58

Query  61   LDIADWPALEALFAAERVDYVIHLAAQAGVRYSIQNPHAYAQSNLTGFTNVLEACRRHPV  120
            + + +   L  +F  E+ + V++LAAQAGVRYSI+NP++Y +SN+ GF N+LE  R+  +
Sbjct  59   VKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNI  118

Query  121  KHLVYASSSSVYGQNAKVPFSEDDRVDAPVSFYAATKKANEVMAHSYAHLYALPTTGLRF  180
            ++L+YASSSSVYG N+  PFS  D +D P+S+YAATKK+NE+MAH+Y+HLY LPTTGLRF
Sbjct  119  QNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRF  178

Query  181  FTVYGPWGRPDMAPWLFTEAILKGETIKVFNHGKMQRDFTYIDDIVEGVLRVMEHVP---  237
            FTVYGPWGRPDMA   FT AI+++++I V+NHG+M RDFTY+DDIVE++ R++   +   
Sbjct  179  FTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPN  238

Query  238  ---QGTDGQP-----PYRLFNIGNHNPVELMEFIRATEAACGREAVKDYYPMQDGDVPVT  289
                G+D +P     PY+++NIGN++PV LMEF+ A E   G+EA K+Y  +Q GDVP T
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPET  298

Query  290  YADTARLRAAVGFSPDTPLADGMQRFVAWYRGY  322
            YA+   L   ++F P+T + DG+++FV WY  Y
Sbjct  299  YANVDDLFRDIDFKPETTIQDGVNKFVDWYLEY  331

437) P700755_001643 in NC_018721


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  300 bits (1125),  Expect = 5e-83, Method: Compositional matrix adjust.
 Identities = 180/348 (52%), Positives = 252/348 (73%), Gaps = 31/348 (8%)

Query  1    MKILVTGAAGFIGYHLCEQLLKLGHDVVGLDNINDYYDVNLKYARLKELGISESEIQYNK  60
            MKIL+TG+AGFIG HL  +L+K GH V+G+D+INDYY V+LK  RLK +G          
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG----------  50

Query  61   GINSNSHGDKLKFIKINLEDQENLPIFFEENSFDVVCNLAAQAGVRYSIEKPMKYVESNI  120
                    +++ F K++LE+ ++L+  F ++  +VV NLAAQAGVRYSIE+P  Y++SNI
Sbjct  51   -------KENFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNI  103

Query  121  MGFANLLECVRNTKVKKLVYASSSSVYGLNEKTPFATNDNVDNPISMYAATKKSNELMAH  180
            +GF N+LEC R+ ++++L+YASSSSVYG N   PF+T+DN+D+P+S+YAATKKSNELMAH
Sbjct  104  VGFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAH  163

Query  181  TYSHLFGIKTIGLRFFTVYGPWGRPDMAMFLFTDAILNNKPIKVFNEGNLSRDFTYIDDI  240
            TYSHL+ + T GLRFFTVYGPWGRPDMA+F FT AI+N+++I V+N+GN+ RDFTY+DDI
Sbjct  164  TYSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDI  223

Query  241  VEGVINTIEKK-NPNK-------------SLYNLYNIGHGSPVKLNDYIKEIEVATGKVA  286
            VE++   + K  +PNK             + Y++YNIG+ SPV+L +++  IE   GK A
Sbjct  224  VEAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEA  283

Query  287  ERIMMPMQPGDVEQTWADTSALFKDYNYKPTTKIDKGIEEFVRWYKDY  334
             +  M +QPGDV +T A+   LF+D ++KP T I+ G++ FV WY +Y
Sbjct  284  RKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEY  331

438) BJ6T_63240 in NC_017249


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  300 bits (1123),  Expect = 7e-83, Method: Compositional matrix adjust.
 Identities = 169/330 (52%), Positives = 249/330 (76%), Gaps = 10/330 (3%)

Query  1    MTGAAGFIGFHVARRLLDEGRRVVGLDNINSYYDPALKRARLDILRRDPRFSFVQIDLGH  60
            +TG+AGFIG H+A++L+ +G+ V+G+D+IN YY  +LK  RL  + ++  F+F ++ L +
Sbjct  5    ITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKVKLEN  63

Query  61   RSTMAELFAKHRFARVIHLAAQAGVRHSIDQPHAYVDANLEGFLNVLEGCRHNACGHLIY  120
               ++ +F  ++   V++LAAQAGVR SI++P++Y+D+N+ GF+N+LE  RH    +LIY
Sbjct  64   YDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNLIY  123

Query  121  ASSSSVYGANAELPFSTRHRADHPVSFYAATKKANELMAHSYSHLYRLPVTGLRFFTIYG  180
            ASSSSVYGAN+  PFST +  DHP+S+YAATKK+NELMAH+YSHLY LP TGLRFFT+YG
Sbjct  124  ASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTVYG  183

Query  181  PWGRPDMAIFLFADAIVKGRPIKLFNHGRMRRDFTYVDDVTRVISRLIERapddnad---  237
            PWGRPDMA+F F+ AIV++++I ++NHG M RDFTYVDD+   ISRL+ +++  N +   
Sbjct  184  PWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEWSG  243

Query  238  ------aagapaRLYNVGNNRPEALMHVLELIEKELGRTTAKEMLPMQPGDVPETFADVG  291
                  ++ AP ++YN+GNN P  LM+ +E IE+ LG+ + K+ + +QPGDVPET+A+V+
Sbjct  244  ADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYANVD  303

Query  292  DLMRDTGFSPSTPIETGISNFVRWYRDYYR  321
            DL RD +F P T I+ G+++FV WY +YY+
Sbjct  304  DLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

439) Snov_3206 in NC_014217


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  300 bits (1123),  Expect = 7e-83, Method: Compositional matrix adjust.
 Identities = 172/334 (52%), Positives = 250/334 (75%), Gaps = 4/334 (1%)

Query  5    RVFITGTAGFIGFHLARLLLSEGFRVHGYDGMTDYYDVRLKQRRHSMLAQSEGFSSTEAM  64
            +++ITGTAGFIG HLA+ L+ +G  V G D++ DYY V LK+ R   +++ E F+     
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKVK  60

Query  65   LQDMETLERTIEEFRPDIIVHLAAQAGVRYSLEKPRAYIDSNIVGTFNVMECARAVPVQH  124
            L++ + L + + + +P+++V+LAAQAGVRYS+E+PR+YIDSNIVG  N++EC+R   +Q+
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  125  LLMASTSSVYGANEEMPFHETDKADTPLTIYAATKKATEAMGHSYAHIYGLPTTMFRFFT  184
            L+ AS+SSVYGAN   PF  +D+ D PL++YAATKK+ E M+H+Y+H+Y LPTT +RFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  185  VYGPWGRPDMALFKFTRGILEGTPIDIYNHGEMWRDFTYVDDLVRGIRLLIDAVPPLPGA  244
            VYGPWGRPDMALFKFT++I+++ +ID+YNHG+M RDFTYVDD+V +I  L+    P +  
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKK--PASPN  238

Query  245  RE-TEVPGDSLSPAAPFRVVNIGNSDKVRLLDFVDAIEQELGAKAIRNYMPMQTGDVPAT  303
            +E +    D+ S+ AP++V NIGN+  VRL++FV+AIE+ LG  A +NYM +Q GDVP T
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPET  298

Query  304  WANADLIHALTGYKPNTPFREGVARFVAWYRDYY  337
             AN D +    ++KP+T +++GV +FV WY +YY
Sbjct  299  YANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

440) H681_01080 in NC_020829


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  299 bits (1120),  Expect = 1e-82, Method: Compositional matrix adjust.
 Identities = 175/332 (53%), Positives = 254/332 (77%), Gaps = 11/332 (3%)

Query  1    MKLLVTGAAGFIGFHTARRLCREGHEVVGIDNLNDYYSVELKlarlallrqqrNFRFERL  60
            MK+L+TG+AGFIG H A++L ++GH V+G+D++NDYYSV LK  RL  + ++ NF F+++
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKV  59

Query  61   DIADAPVLAALFQREGFDRVIHLAAQAGVRYSLENPQVYADANLSGFVNLLEGCRHARVG  120
             + +   L+ +F  E  + V++LAAQAGVRYS+ENP+ Y D+N+ GF+N+LE  RH  + 
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYAssssvygmssRMPFSTDAAVDQPVSLYAATKRANELMAHTYAHLYRLPLTGLRFF  180
            +L+YASSSSVYG ++  PFST   +D+P+SLYAATK++NELMAHTY+HLY LP TGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTRAILEGRPIEIYNNGEMSRDFTYIDDVVEGLLRIQDRPPEP--  238
            TVYGPWGRPDMALFKFT+AI+++++I++YN+G+M RDFTY+DD+VE++ R+  +P+ P  
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  239  ---GEHGE-----APVALYNIGRGEPVRLLDMVECVECALGRRAVRHYLPLQPGDVLQTW  290
               G + +     AP  +YNIG   PVRL++ VE +E  LG+ A ++Y+ LQPGDV +T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  291  ADVEALAQRTGFRPATPLQSGVERFVHWYREF  322
            A+V+ L +  +F+P T +Q GV++FV+WY E+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEY  331

441) lpsL in NC_011985


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  299 bits (1122),  Expect = 9e-83, Method: Compositional matrix adjust.
 Identities = 174/334 (53%), Positives = 246/334 (74%), Gaps = 2/334 (0%)

Query  1    MRYLITGTAGFIGFHLAKRLLDDGHFVVGFDGMTPYYDVKLKEKRTAILARSNGFKAVTG  60
            M+ LITGTAGFIG HLAK+L+ +GH+V+G D++  YY V LKE R   +++ N F     
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKEN-FTFNKV  59

Query  61   MLEDKAALDHAAELAEPDVIVHLAAQAGVRYSLENPRSYVDSNLVGSFNVLELARSIQPK  120
             LE+   L       +P+V+V+LAAQAGVRYS+ENPR+Y+DSN+VG  N+LE +R ++ +
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLLLASTSSVYGANEKIPFAESDKADEQMTIYAATKKSMELMAHSYAHLFHIPTTVFRFF  180
            +L+ AS+SSVYGAN   PF+ SD+ D+ +++YAATKKS ELMAH+Y+HL+++PTT +RFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFVEAIKHDRPIEIYGEGKMSRDFTYIDDLVEGIVKLIGVIPSEEN  240
            TVYGPWGRPDMALFKF  AI +D++I++Y +G+M RDFTY+DD+VE+I +L+   P+  N
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVK-KPASPN  238

Query  241  RVVSDTISDTLSKNAPFRIVNIGGGQPVGLMAFVETIEAMLGKRAIRHMLPMQPGDVHNT  300
            +  S++ +D  S  AP+++ NIG   PV LM FVE+IE  LGK A ++ + +QPGDV +T
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPET  298

Query  301  YAVPDLLVALTGFKPQIEVDAGVRRFVEWYQENY  334
            YA  D L    +FKP+  ++ GV +FV+WY E Y
Sbjct  299  YANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

442) A7H1H_0655 in NC_021878


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  298 bits (1118),  Expect = 2e-82, Method: Compositional matrix adjust.
 Identities = 194/348 (56%), Positives = 264/348 (76%), Gaps = 27/348 (7%)

Query  1    MKILITGTAGFIGYHLAKKLLNRGDEVVGLDNINDYYDVNLKYARlnelgilkeeiiene  60
            MKILITGTAGFIG HLAKKL+++G+ V+G+D+INDYY V+LK  RL+ +G          
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK---------  51

Query  61   lisskTYPKHKFVKMDLSDTENIYKLFETEKFDTVCNLAAQAGVRYSIENPHAYIDSNIK  120
                    +  F K+ L + +++ K+F  E+ + V NLAAQAGVRYSIENP++YIDSNI 
Sbjct  52   -------ENFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIV  104

Query  121  GFMNILEACRHNDVKNLCYASSSSVYGLNKSQPFKTTDKTDTPISLYAATKKSNELMAHT  180
            GFMNILE  RH +++NL YASSSSVYG N S+PF T+D+ D P+SLYAATKKSNELMAHT
Sbjct  105  GFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHT  164

Query  181  YSHLFGISTTGLRFFTVYGPWGRPDMAPMLFTNAILNDEEIKVFNHGDMSRDFTYiddiv  240
            YSHL+ ++TTGLRFFTVYGPWGRPDMA   FT+AI+ND+ I V+NHG+M RDFTY+DDIV
Sbjct  165  YSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIV  224

Query  241  dgiikvidNPVKTK-----------SNLAPYKIYNIGNNSPIQLLDFIKTLEKSIGLEAK  289
            ++I +++ +P   +           S+ APYK+YNIGNNSP++L++F+ ++E+ +G EA+
Sbjct  225  EAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEAR  284

Query  290  KNFLPMQDGDVESTYADVEDLMKDFNYKPNTKLADGIDEFVKWYKSFY  337
            KN++ +Q GDV  TYA+V+DL +D+++KP+T + DG++ FV WY  +Y
Sbjct  285  KNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

443) Mext_3553 in NC_010172


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  296 bits (1107),  Expect = 1e-81, Method: Compositional matrix adjust.
 Identities = 172/330 (53%), Positives = 236/330 (72%), Gaps = 1/330 (0%)

Query  7    ILVTGAAGFIGFHVACRLLRAGRPVVGVDSLTPYYDISLKaarlarleelPGFTSVRADL  66
            IL+TG+AGFIG H+A +L++ G+ V+GVDS+  YY +SLK  RL  +     FT  +  L
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKVKL  61

Query  67   ADAEATREIFARYAPEQVVHLAAQPGVRRSIVEPSPYVTSNVVAFLNVLEGCRHGGVKHL  126
             + +    +F    PE VV+LAAQ+GVR SI +P  Y+ SN+V+F+N+LE  RH  +++L
Sbjct  62   ENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNL  121

Query  127  AYASSSSVYGGNGKLPFAERDGVDHPVNLYAATKKANELMAHAYSHLYDLPATGLRFFTV  186
             YASSSSVYG+N   PF+  D +DHP++LYAATKK+NELMAH+YSHLY+LP+TGLRFFTV
Sbjct  122  IYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTV  181

Query  187  YGPWGRPDMAVYTFTDAIARGRPIEVANGGRVWRDFTYVDDVAEGVVRVLDRPARPDPTW  246
            YGPWGRPDMA++ FT AI  +++I+V N G + RDFTYVDD+ E++ R++ +PA P+  W
Sbjct  182  YGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEW  241

Query  247  DPLRPDPATSAAPHRVYNIGNDRPEELNRLVALIEGALGRRAERVDRPLPPGDILETRAD  306
                PDP++S AP +VYNIGN+ P  L  +V  IE  LG+ A +    L PGD+ ET A+
Sbjct  242  SGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYAN  301

Query  307  VSDLRRDVGFAPATPLEIGVERFVAWYCSY  336
            V DL RD++F P T ++ GV++FV WY  Y
Sbjct  302  VDDLFRDIDFKPETTIQDGVNKFVDWYLEY  331

444) BJ6T_37860 in NC_017249


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  296 bits (1108),  Expect = 1e-81, Method: Compositional matrix adjust.
 Identities = 167/332 (51%), Positives = 248/332 (75%), Gaps = 10/332 (3%)

Query  6    ILVTGAAGFIGFHVARQLLAEGRPVVGLDNLNSYYDPALKQARLALLRNDSNFAFVEADL  65
            IL+TG+AGFIG H+A++L+ +G+ V+G+D++N YY  +LK+ RL  + ++ NF+F    L
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKVKL  61

Query  66   ADRETIAALFARHRFDKVVHLAAQAGVRYSIDHPHAYADSNLQGFLNVLEGCRNNSCRHL  125
             + + ++ +F  ++ + VV+LAAQAGVRYSI++P++Y DSN+ GF+N+LE  R+ + ++L
Sbjct  62   ENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNL  121

Query  126  VYASSSSVYGANTKLPFAVQDRTDHPVSFYAATKKANELMAQSYSHLYRLPVTGLRFFTI  185
            +YASSSSVYGANT  PF+  D  DHP+S+YAATKK+NELMA++YSHLY LP TGLRFFT+
Sbjct  122  IYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTV  181

Query  186  YGPWGRPDMALFLFVNAIMAERPIRLFNHGKMRRDFTYIDDVTRVVSKLIDRVpaddpaa  245
            YGPWGRPDMALF F +AI+ +++I ++NHG+M RDFTY+DD+   +S+L+ + ++ +   
Sbjct  182  YGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEW  241

Query  246  anapS---------KVYNVGNHHPEELMHVVGLLEQELGRTAIKELLPMQPGDVLETFAD  296
            + A +         KVYN+GN+ P  LM+ V  +E+ LG+ A K+ + +QPGDV ET+A+
Sbjct  242  SGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYAN  301

Query  297  VEDLTRDTGFAPSTPIALGVRNFVTWYRDYFK  328
            V+DL RD +F P T I  GV +FV WY +Y+K
Sbjct  302  VDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

445) HNE_2639 in NC_008358


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  296 bits (1108),  Expect = 1e-81, Method: Compositional matrix adjust.
 Identities = 169/334 (51%), Positives = 251/334 (76%), Gaps = 3/334 (0%)

Query  1    MKILVTGAAGFIGSEMALRLLKEGHSVTGVDCFTPYYDPQLKEDRAARLTAFDDFRLERI  60
            MKIL+TG+AGFIGS++A +L+K+GH V GVD +  YY   LKEDR   +   ++F ++++
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   RIEDSEAMEAVFQRDTPEMVLHFAAQAGVRYSLDHPRDFIDANIVGSFNIIDLSRRHGTQ  120
            ++E+ + +  VF  + PE+V+++AAQAGVRYS+++PR +ID+NIVG  NI++ SR+   Q
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVMASTSSAYGANQKFPFEERDSAPYPLTIYAATKLASELIAHSHAHLYGVPTTVLRFF  180
            +L+ AS+SS YGAN   PF   D+   PL++YAATK ++EL+AH+ +HLY +PTT LRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  SVYGPWGRPDMAFFLFTDKIFKGQPIDVFNHGDLLRDFTYIDDLVEAIRRLMDTPPVVGN  240
            +VYGPWGRPDMA+F FT  I ++Q+IDV+NHG+++RDFTY+DD+VEAI RL+  P+   +
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  H--IIRGDSLSPVAPYRLVNIGNASPVRLMDYIEAIEGAIGRKAEKNMIDMQPGDVKQTF  298
            +      D+ S+ APY++ NIGN SPVRLM+++EAIE  +G+ A KN +D+QPGDV +T+
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  299  ADVRLLDALTGYTPDTDYRTGIARFVDWYRDYFK  332
            A+V  L    ++ P+T  + G+ +FVDWY +Y+K
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

446) lspL in NC_004463


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  296 bits (1110),  Expect = 7e-82, Method: Compositional matrix adjust.
 Identities = 166/332 (50%), Positives = 247/332 (75%), Gaps = 10/332 (3%)

Query  6    ILVTGAAGFIGFHVARQLLAEGRPVIGLDNLNSYYDPALKQARLELLRSDSRFSFVKADL  65
            IL+TG+AGFIG H+A++L+ +G+ VIG+D++N YY  +LK+ RL  +  ++ F+F K  L
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKEN-FTFNKVKL  61

Query  66   ADRETIAALFGQHAFAKVVHLAAQAGVRYSIEHPQAYADSNLLGFLNVLEGCRNNGCRHL  125
             + + ++ +F ++    VV+LAAQAGVRYSIE+P++Y DSN++GF+N+LE  R+   ++L
Sbjct  62   ENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNL  121

Query  126  VYASSSSVYGANTKLPFAVQDRTDHPVSFYAATKKANEVMAQSYSHLYRLPVTALRFFTI  185
            +YASSSSVYGANT  PF+  D  DHP+S+YAATKK+NE+MA++YSHLY LP T+LRFFT+
Sbjct  122  IYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTV  181

Query  186  YGPWGRPDMAMFLFVNAIMAGTPIRLFNHGRMRRDFTYIDDVTRVVSKLIDRVpaddpaa  245
            YGPWGRPDMA+F F +AI+ + +I ++NHG M RDFTY+DD+   +S+L+ + ++ +   
Sbjct  182  YGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEW  241

Query  246  anapS---------KVYNVGNHRPEELMHVVGLLEQELGRTAIKELLPMQPGDVLETFAD  296
            + A +         KVYN+GN+ P  LM+ V  +E+ LG+ A K+ + +QPGDV ET+A+
Sbjct  242  SGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYAN  301

Query  297  VEDLMRDTGFAPSTPIEHGVRNFVTWYRDYFK  328
            V+DL RD +F P T I++GV +FV WY +Y+K
Sbjct  302  VDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

447) HMPREF0351_11960 in NC_017960


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  296 bits (1110),  Expect = 8e-82, Method: Compositional matrix adjust.
 Identities = 174/345 (51%), Positives = 261/345 (76%), Gaps = 19/345 (5%)

Query  11   VFVTGVAGFIGSNLTKRLFADIEGVKVVGIDNMNDYYDVRLKEARLEELFKFENFVFVKG  70
            +++TG AGFIGS+L+K+L+   +G  V+G+D++NDYY V LKE RL  + K ENF F K 
Sbjct  3    ILITGTAGFIGSHLAKKLIK--QGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  71   NLADKAVITAIFEEHHPNIVVNLGAQAGVRYSIINPDAYIEGNMIGFYNILEACRHYPVE  130
            +L +   ++ +F +++P++VVNL+AQAGVRYSI NP +YI++N++GF NILE  RH+ ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  131  HLVYASSSSVYGSNKKIPYSTDDKVDNPVSLYAATKKSNELMTHAYSKLYNIPSTGLRFF  190
            +L+YASSSSVYG+N   P+ST D++D+P+SLYAATKKSNELM+H+YS LYN+P+TGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  191  TVYGPAGRPDMAYFGFTNKLLKGETIQIFNYGNCKRDFTYIDDIVEGVIRIMQ--GAPEK  248
            TVYGP GRPDMA F FT+ ++++++I+++N GN  RDFTY+DDIVE++ R+++  ++P+K
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  249  Q----TGEDGLPVPPYAVYNIGNHNPENLLDFVQILLEELIRAGVLPEDYDFEAHKELVP  304
            +      + G + +PY VYNIGN++P  L++FV+ + + L +          EA+K+ + 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGK----------EARKNYMD  289

Query  305  MQPGDVPVTYADTEALERDYGFKPATPLRTGLRKFAEWYKEFYMS  349
            +QPGDVP TYA+ + L RD +FKP T ++ G+ KF +WY E+Y  
Sbjct  290  LQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

448) BCE_5384 in NC_003909


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  295 bits (1104),  Expect = 2e-81, Method: Compositional matrix adjust.
 Identities = 186/341 (55%), Positives = 252/341 (74%), Gaps = 25/341 (7%)

Query  13   LITGAAGFVGYFLSKKLLDQGCKVIGIDNINDYYDVNLKYARLEQLKPYEKFIFIKGDIS  72
            LITG+AGF+G  L+KKL+ QG  VIG+D+INDYY V+LK  RL  +   E+F F K  + 
Sbjct  4    LITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKVKLE  62

Query  73   DKDMITKLFEEYKPNIVVNLAAQAGVRYSIENPDVYIQSNIIGFYNILEACRHFPVEHLV  132
            + D ++K+F + +P++VVNLAAQAGVRYSIENP  YI+SNI+GF NILE  RHF +++L+
Sbjct  63   NYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNLI  122

Query  133  YASSSSVYGANKKVPFEETDFVDNPVSLYASTKKSNELMAHTYSHLYKIPATGLRFFTVY  192
            YASSSSVYGAN   PF  +D +D+P+SLYA+TKKSNELMAHTYSHLY++P+TGLRFFTVY
Sbjct  123  YASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTVY  182

Query  193  GPLGRPDMAYFGFTDKYFAGDSIKIFNNGDFENDLYRDFTYIDDIVEGIQRLLSNPPKGD  252
            GP GRPDMA F FT     +++I ++N+G    ++ RDFTY+DDIVE+I RL+ +P+  +
Sbjct  183  GPWGRPDMALFKFTKAIVNDQAIDVYNHG----NMMRDFTYVDDIVEAISRLVKKPASPN  238

Query  253  VEH--------------KVFNIGNNNPEKLMVFIETLEKVLGKALGREVAFEKVFEPIKP  298
             E               KV+NIGNN+P +LM F+E++E+ LGK  +R     K +  ++P
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKE-AR-----KNYMDLQP  292

Query  299  GDVPATYASTDLLQKAVDFKPETSIEKGLQEFANWYIEYYK  339
            GDVP TYA+ D L + +DFKPET+I+ G++ F +WY+EYYK
Sbjct  293  GDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

449) Ddes_0025 in NC_011883


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  295 bits (1105),  Expect = 2e-81, Method: Compositional matrix adjust.
 Identities = 182/337 (55%), Positives = 253/337 (76%), Gaps = 4/337 (1%)

Query  1    MHVLVTGAAGFIGYHLAARLLADGHSVVGIDNCNDYYDVQLKKDRLAQLAALPQASCFRF  60
            M +L+TG+AGFIG HLA +L+ +GH V+G+D+ NDYY V LK DRL  ++       F F
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK----ENFTF  56

Query  61   EPLDLADGPGMSALFAREGFSHVVNLAAQAGVRYSLVNPESYLSSNLTGFGHVLEGCRHN  120
            + + L +  ++S +F  E    VVNLAAQAGVRYS+ NP +Y+ SN+ GF ++LE  RH 
Sbjct  57   NKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHF  116

Query  121  KVGHLLFASSSSVYGLNAAQPYSVRHNVDHPVSLYAATKKSNELMAHSYSHLYGIPCTGL  180
            ++ +L++ASSSSVYG N+++P+S  +N+DHP+SLYAATKKSNELMAH+YSHLY +P TGL
Sbjct  117  NIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGL  176

Query  181  RFFTVYGPWGRPDMALHLFTTAIVRGEPIKVFNEGRMRRDFTYIDDIVEGIVRllplapg  240
            RFFTVYGPWGRPDMAL  FT AIV +++I V+N+G M RDFTY+DDIVE+I RL+  +++
Sbjct  177  RFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPAS  236

Query  241  pdpafdpaapdpasssapWRIYNIGNNNTVELNDFIATLEDALGMKARKDMLPMQPGDVK  300
            P+     A PDP+SS AP ++YNIGNN+ V L +F+ ++E+ LG  ARK+ + +QPGDV 
Sbjct  237  PNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVP  296

Query  301  ATWADINDLTALTGFAPSTPLREGIARFVEWYKEYYK  337
             T A+++DL    +F P T +++G+ +FV+WY EYYK
Sbjct  297  ETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

450) FP2_31550 in NC_021042


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  295 bits (1106),  Expect = 2e-81, Method: Compositional matrix adjust.
 Identities = 177/345 (52%), Positives = 262/345 (76%), Gaps = 19/345 (5%)

Query  4    TVFITGASGFIGSNLAKRILTTEPDTKVIGLDNMNDYYDVRIKEARLAELQKFENYTFIK  63
             ++ITG++GFIGS+LAK+++    +  VIG+D++NDYY V +KE RL  + K EN+TF K
Sbjct  2    KILITGTAGFIGSHLAKKLIK--QGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNK  58

Query  64   GNLADKALINSIFEQYHPDIVVNLGAQAGVRYSITNPDAYIESNMIGFYNILEACHHYPV  123
             +L +   ++ +F + +P++VVNL+AQAGVRYSI NP +YI+SN++GF NILE  +H+ +
Sbjct  59   VKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNI  118

Query  124  EHLVYASSSSVYGSNKKVPYSTDDKVDNPVSLYAATKKSNELMAHAYSKLYNIPSTGLRF  183
            ++L+YASSSSVYG+N   P+ST D++D+P+SLYAATKKSNELMAH+YS LYN+P+TGLRF
Sbjct  119  QNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRF  178

Query  184  FTVYGPAGRPDMAYFGFTNKLVNGETIKIFNYGNCKRDFTYVDDIVEGVVRVMAK--APE  241
            FTVYGP GRPDMA F FT+ +VN+++I ++N GN  RDFTYVDDIVE++ R++ K  +P+
Sbjct  179  FTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPN  238

Query  242  KK----NGEDGLPIPPYAVYNIGNSNPENLLDFVQILSEELVRAGVLPADYDFEAHKELV  297
            K     + + G + +PY VYNIGN++P  L++FV+ + + L +          EA+K+ +
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGK----------EARKNYM  288

Query  298  PMQPGDVPVTFADTEPLERDFGFKPHTPLREGLRKFAQWYKEFYM  342
             +QPGDVP T+A+ + L RD++FKP+T +++G+ KF +WY E+Y 
Sbjct  289  DLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

451) Jann_0077 in NC_007802


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  295 bits (1105),  Expect = 2e-81, Method: Compositional matrix adjust.
 Identities = 168/331 (51%), Positives = 248/331 (75%), Gaps = 5/331 (1%)

Query  5    LVTGSAGFIGYHLCARLLADGWRVIGLDAMTDYYDVSLKEARLAMLTDHDAFTGVEARIE  64
            L+TG+AGFIG HL  +L+ +G  VIG+D++ DYY VSLKE RL  + + + FT    ++E
Sbjct  4    LITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKVKLE  62

Query  65   APGVLHDLFDEHRPDAIIHLAAQAGVRYSIENPESYVEANLIGTFRLLEAMRAFPPRHSL  124
              + L  +F +++P+ +++LAAQAGVRYSIENP +Y+++N++G   +LE  R F  ++ +
Sbjct  63   NYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNLI  122

Query  125  LASTSSAYGANTEMPYAETMQADHQMSFYAATKKSNEVMAHSYAHLYDLPTTMFRFFTVY  184
             AS+SS YGANT  P++ + + DH +S+YAATKKSNE+MAH+Y+HLY+LPTT +RFFTVY
Sbjct  123  YASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTVY  182

Query  185  GPWGRPDMALFKFTKAILNGDPIDVYNHGDMKRDFTYVTDLVDGIIRLIEAVPGTE----  240
            GPWGRPDMALFKFTKAI+N+++IDVYNHG+M RDFTYV D+V++I RL+   ++ +    
Sbjct  183  GPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEWS  242

Query  241  PVESDSLSPVAPHRIVNIGNSNSVQLMDYIEAIETATGRTAEKNMMPMQAGDVPATWADA  300
              ++D+ S+ AP ++ NIGN+++V+LM+++EAIE   G+ A KN M +Q+GDVP T A+ 
Sbjct  243  GADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYANV  302

Query  301  SLLQHLTQYTPRTDMAEGVANFVAWYRDYYK  331
              L +  ++ P T + +GV +FV WY +YYK
Sbjct  303  DDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

452) SpiBuddy_1808 in NC_015152


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  294 bits (1102),  Expect = 3e-81, Method: Compositional matrix adjust.
 Identities = 186/330 (57%), Positives = 257/330 (78%), Gaps = 11/330 (3%)

Query  15   LVTGAAGFIGFHLTQRLLSQGCSVIGFDNLNDYYEVSLKEERLRLLACDNFYFYkadlad  74
            L+TG+AGFIG HL+++L+ QG  VIG D++NDYY VSLKE+RL+ ++ +NF F K  L +
Sbjct  4    LITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVKLEN  63

Query  75   kkalddIFEQHAIDYVINLAAQAGVRYSIDNPYAYLQSNLVGFLNILEACRHHTVKHLVY  134
               L  +F ++  + V+NLAAQAGVRYSI+NP +Y++SN+VGF+NILE  RH  +++L+Y
Sbjct  64   YDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNLIY  123

Query  135  ASSSSVYGLNSKIPYSTTDQVDHPVSLYAATKKSNELMAHAYTHLYQIPSTGLRFFTVYG  194
            ASSSSVYG N+  P+ST+D++DHP+SLYAATKKSNELMAH+Y+HLY++P+TGLRFFTVYG
Sbjct  124  ASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTVYG  183

Query  195  PYGRPDMAYFSFAKRIMEGKGIKVYNNGDMWRDFTYVDDiiaaieriipnppepneaK--  252
            P GRPDMA F F+K I+++++I VYN+G+M RDFTYVDDI+ AI R++ +P+ PN     
Sbjct  184  PWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEWSG  243

Query  253  ---------DRYKIYNIGNNKPVRLSRFVEILETCLGREATKEYLPMQSGDVYQTYADVT  303
                       YK+YNIGNN PVRL  FVE +E  LG+EA K+Y+ +Q+GDV +TYA+V 
Sbjct  244  ADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYANVD  303

Query  304  DLMKDFDFKPDTPLENGLASFVSWFKSYYQ  333
            DL +D+DFKP+T +++G+  FV W+  YY+
Sbjct  304  DLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

453) Rleg2_2997 in NC_011369


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  294 bits (1102),  Expect = 3e-81, Method: Compositional matrix adjust.
 Identities = 165/331 (50%), Positives = 248/331 (75%), Gaps = 1/331 (0%)

Query  1    MRYFITGTAGFIGFHLARRLLQEGHEVTGFDGLTPYYNVKLKEMRHAALSQFPAFKPVIA  60
            M+ +ITGTAGFIG HLA++L+++GH V G D++  YY+V LKE R  ++++   F     
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   MLEDREALEAAVVAAKPDILIHLAAQAGVRYSLENPEAYLRSNVEGSWNIMEIARRVEIR  120
             LE+ + L    V  +P+++++LAAQAGVRYS+ENP +Y+ SN+ G  NI+E +R+ +I+
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLMLASTSSIYGANATVPFHETDRADEPLTIYAATKKSMELMAHSYAHLHKIPTTAFRFF  180
            +L+ AS+SS+YGAN++ PF  +D  D+PL++YAATKKS ELMAH+Y+HL ++PTT++RFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTKNMLEGQPIEIYGEGNMSRDFTYIDDLVEGIVRLSAIAPGEDN  240
            TVYGPWGRPDMALFKFTK ++++Q+I++Y +GNM RDFTY+DD+VE+I RL   +++ ++
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  RLDNVAVETLSRQAPFRVVNIGGGQPVSLMDFVETVEKALGRPAIRKMLAMQKGDVPRTF  300
                   +  S  AP++V NIG   PV LM+FVE++E+ LG+ A ++ + +Q GDVP T+
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  AAPDLLVALTGYKPDTTLDVGVKAFVDWYLD  331
            A  D L    ++KP+TT++ GV+ FVDWYL+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLE  330

454) Ccan_23190 in NC_015846


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  294 bits (1101),  Expect = 4e-81, Method: Compositional matrix adjust.
 Identities = 187/347 (54%), Positives = 251/347 (73%), Gaps = 29/347 (8%)

Query  1    MKILVTGAAGFIGFHTCKILLEREHKVFGIDNINDYYDVSLKYERLLQLGIEKSHCIENK  60
            MKIL+TG+AGFIG H  K L+ + H V+G+D+INDYY VSLK +RL  +G E        
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE--------  52

Query  61   QVVSSKFTNFCFQKTDIINKNILEKIFEVEKFDIVCHLAAQAGVRYSIENPESYIQSNIV  120
                    NF F+K  + N + L K+F  E+ ++V +LAAQAGVRYSIENP +YI+SNIV
Sbjct  53   --------NFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIV  104

Query  121  GFLNILECCRHFNIPHLVYASSSSVYGMNSKIPFHEQDLTDTPVSLYAATKKSNELMAYT  180
            GF+NILEC RHFNI +L+YASSSSVYG N+  PF   D  D P+SLYAATKKSNELMA T
Sbjct  105  GFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHT  164

Query  181  YTHLYHFATTGLRFFTVYGPWGRPDMSPILFADAIMNNRPIKVFNNGEMERDFTYIDDIV  240
            Y+HLY+++TTGLRFFTVYGPWGRPDM+ + F+ AI+N+++I V+N+G+M RDFTY+DDIV
Sbjct  165  YSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIV  224

Query  241  EGIVRVIEKPFGDFRNKS-------------KVYNIGNNKSVKLENFISEIECNMEKVAV  287
            E+I R++ KP +  ++ S             KVYNIGNN +V+L +F+  IE ++ K A 
Sbjct  225  EAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEAR  284

Query  288  KEMYPMQKGDVKRTWADVSELIKDYDYKPQTNIKQGVKKFIEWYKIY  334
            K+   +Q GDV  T A+V +L++D D+KP+T I++GV+KF++WY  Y
Sbjct  285  KNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEY  331

455) lspL in NC_020908


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  294 bits (1101),  Expect = 4e-81, Method: Compositional matrix adjust.
 Identities = 176/332 (54%), Positives = 249/332 (75%), Gaps = 3/332 (0%)

Query  4    KVLVTGSAGFIGYHLCKHLLAEGFDVIGLDAMTDYYDVRLKERRLANLLQSGSFRAVNDR  63
            K+L+TG+AGFIG HL K L+ +G  VIG+D++ DYY V LKE RL ++    +F   + +
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKVK  60

Query  64   LEADGVLMDLVAAEKPDFIVHLAGQAGVRYSIDEPRSYIDANIIGTFNLLEAVRATPVKH  123
            LE  + L  +   E+P+ +V+LA+QAGVRYSI++PR+YID+NI+G  N+LE  R   +++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  124  LLLASTSSAYGANTQMPYAETDKADTQMSFYAATKKSNEVMAHSYAHLYDIPTTMFRFFT  183
            L+ AS+SS YGANT  P++ +D+ D  +S+YAATKKSNE+MAH+Y+HLY++PTT +RFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  184  VYGPWGRPDMALFKFTKAILNGDPIDVYNHGDMSRDFTYVTDLVRGIHLLLD--AVPERL  241
            VYGPWGRPDMALFKFTKAI+N+++IDVYNHG+M RDFTYV D+V +I  L+   A P++ 
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  242  DDVPIGDSLSPVAPHRIVNIGNGEPVQLMDFIDAIEEALGQPATKNFMDMQPGDVPATWA  301
               +  D+ S+ AP ++ NIGN  PV+LM+F++AIE+ LG+ A KN+MD+QPGDVP T A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  302  DCALLQKLTGYTPKTDVVTGVKAFVDWYRDYY  333
            +   L +  ++ P T +  GV+ FVDWY +YY
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

456) lspL in NC_016894


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  294 bits (1101),  Expect = 4e-81, Method: Compositional matrix adjust.
 Identities = 172/344 (50%), Positives = 249/344 (73%), Gaps = 25/344 (7%)

Query  9    TILVTGAAGFIGFHLARKLLEKGYYVLGIDNINDYYDVKLKFDRLEILEYYDNFNFIKGD  68
             IL+TG+AGFIG HLA+KL+ +G YV+G+D+INDYY V LK DRL  +   +NF F K  
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKVK  60

Query  69   ITDKEMVMKIFEGNTPTIVVNLAAQAGVRNSIENPDVYIESNVVGFFNILEACRNYPVKH  128
            + + + + K+F ++ P +VVNLAAQAGVR SIENP  YI+SN+VGF NILE  R++ +++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  129  LVYASSSSVYGANIKVPFEEADAVDHPVSLYAATKKTNELMAYTYSYLYKIPATGLRFFT  188
            L+YASSSSVYGAN   PF  +D +DHP+SLYAATKK+NELMA TYS LY++P+TGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  189  VYGPFGRPDMAYFGFVNKYIAGEPINIFNNGDFKNDLYRDFTYVDDIVEGIERVIVQAPV  248
            VYGP GRPDMA F F +  + +++I+++N+G    ++ RDFTYVDDIVE+I R++ +++ 
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHG----NMMRDFTYVDDIVEAISRLVKKPAS  236

Query  249  GE--------------IRHNIFNIGNNKPIKLMTFIETLEKTLGNALDCSVVFDKIFQPL  294
             +                 +++NIGNN P++LM F+E++E+ LG+         K +  L
Sbjct  237  PNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEA------RKNYMDL  290

Query  295  KPGDVKVTYASIDKLYKAVGFKPSTSIEEGLQEFSNWYVKYYQM  338
            +PGDV  TYA++D L++ ++FKP T+I++G++ F +WY+ YY+ 
Sbjct  291  QPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

457) lspL1 in NC_014034


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  293 bits (1096),  Expect = 1e-80, Method: Compositional matrix adjust.
 Identities = 171/337 (51%), Positives = 253/337 (76%), Gaps = 7/337 (2%)

Query  21   RILLTGTAGFIGFHLARQLLAEGWRVQGYDGMTDYYDVALKHDRHAILRAHPNFTATEAM  80
            +IL+TGTAGFIG HLA++L+ +G  V G D++ DYY V+LK+DR   + +  NFT     
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKVK  60

Query  81   LEDQPRFDAVADAF---RPEVIVHLAAQAGVRYSLENPRAYLDSNVIGTFSVIEAARRLQ  137
            LE+   +D ++  F   +PEV+V+LAAQAGVRYS+ENPR+Y+DSN++G  +++E +R+++
Sbjct  61   LEN---YDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFN  117

Query  138  VKHLLIASTSSVYGANPKMPFAETDKADTQLTIYAATKKANESMAHAYAHLWNLPVTMFR  197
            +++L+ AS+SSVYGAN   PF+ +D+ D  L++YAATKK+NE MAH+Y+HL NLP T +R
Sbjct  118  IQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLR  177

Query  198  FFTVYGPWGRPDLALYKFVDAILDDRPIDIYNHGEMYRDFTYIDDLVRGIRLLIDAVPVR  257
            FFTVYGPWGRPD+AL+KF  AI++D++ID+YNHG+M RDFTY+DD+V +I  L+   +  
Sbjct  178  FFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASP  237

Query  258  PEDGIVPAGDSLSPVAPFRIVNIGNSDKVRLLDFVEAIEACLGKTALRNYLPMQKGDVPA  317
              +   +  D+ S+ AP+++ NIGN+  VRL++FVEAIE  LGK A +NY+ +Q GDVP 
Sbjct  238  NKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPE  297

Query  318  TFADATLLHSLTGYRPQTDFREGIARFVDWYRGYYKK  354
            T+A+   L    +++P+T +++G+ +FVDWY  YYKK
Sbjct  298  TYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

458) SL003B_0745 in NC_015259


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  293 bits (1099),  Expect = 6e-81, Method: Compositional matrix adjust.
 Identities = 165/332 (50%), Positives = 254/332 (77%), Gaps = 1/332 (0%)

Query  3    TVLVTGSAGFIGSHVAQRLLDDGWRVVGIDNVNAYYDPalkearlarlraSNHFHEEQVS  62
             +L+TG+AGFIGSH+A++L+ +G  V+G+D++N YY +        +  + ++F  ++V 
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYY-SVSLKEDRLKSIGKENFTFNKVK  60

Query  63   VEDREAVTAVFRRHAPERIIHLAAQAGVRHSLDAPQDYVDANITGFLNILEAARAHPVDH  122
            +E+ + ++ VF  + PE +++LAAQAGVR S++ P+ Y+D+NI GF+NILE +R   +++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  123  LVFASTSSVFGLDKAMPLSPHRGGNHPVSFYAATKKANEMMAHAYAHLFAIPCTGLRFFT  182
            L++AS+SSV+G + + P+S     +HP+S+YAATKK+NE+MAH+Y+HL+ +P TGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  183  VYGPWGRPDMALFKFTKAILAGEPVPLYNEGRMVRDFTYIDDIVEGVVRIadrpaapdpa  242
            VYGPWGRPDMALFKFTKAI+ ++++ +YN+G M+RDFTY+DDIVE++ R+  +PA+P+  
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  243  weaerpdpaSSAAPYRIYNIGNSQPVELLTYLEAIEAATGRTARRELLPMQPGDVSATWA  302
            W +  PDP+SS APY++YNIGN+ PV L+ ++EAIE   G+ AR++ + +QPGDV+ T A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  303  DVEDLVAATGFRPSTPVADGVRAFVDWYRDYY  334
            +V+DL    +F+P T + DGV  FVDWY +YY
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

459) BCK_09055 in NC_018491


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  293 bits (1098),  Expect = 7e-81, Method: Compositional matrix adjust.
 Identities = 182/341 (54%), Positives = 253/341 (75%), Gaps = 25/341 (7%)

Query  13   LITGAAGFVGYFLSKKLLEQGCQVIGIDNINDYYDVNLKYARLENLKPYENFTFIKGDIS  72
            LITG+AGF+G  L+KKL+ QG  VIG+D+INDYY V+LK  RL ++   ENFTF K  + 
Sbjct  4    LITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKVKLE  62

Query  73   DKDTINKLFEEYKPNIVVNLAAQAGVRYSIENPDVYIQSNIIGFYNILEACRHYPVDHLV  132
            + D ++K+F + +P++VVNLAAQAGVRYSIENP  YI+SNI+GF NILE  RH+ +++L+
Sbjct  63   NYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNLI  122

Query  133  YASSSSVYGANKKVPFEETDFVDNPVSLYASTKKSNELMAHTYSHLYKIPATGLRFFTVY  192
            YASSSSVYGAN   PF  +D +D+P+SLYA+TKKSNELMAHTYSHLY++P+TGLRFFTVY
Sbjct  123  YASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTVY  182

Query  193  GPMGRPDMAYFGFTDKYFAGESIKIFNNGDFENDLYRDFTYIDDIVEGIQRLLSNPPIED  252
            GP GRPDMA F FT     +++I ++N+G    ++ RDFTY+DDIVE+I RL+ +P+  +
Sbjct  183  GPWGRPDMALFKFTKAIVNDQAIDVYNHG----NMMRDFTYVDDIVEAISRLVKKPASPN  238

Query  253  VKHT--------------VFNIGNNNPEKLMVFIKALEKALSNSLGRTVEFKKEFEPIKP  298
               +              V+NIGNN+P +LM F+ A+E+ L++      E +K++  ++P
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGK------EARKNYMDLQP  292

Query  299  GDVPATYASTDLLQKAVDFKPETSIEKGLQEFTNWYVDYYK  339
            GDVP TYA+ D L + +DFKPET+I+ G++ F +WY++YYK
Sbjct  293  GDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

460) TERTU_1413 in NC_012997


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  293 bits (1097),  Expect = 7e-81, Method: Compositional matrix adjust.
 Identities = 179/332 (54%), Positives = 256/332 (78%), Gaps = 3/332 (0%)

Query  1    MKYLVTGSAGFIGAATAKRLVDEGHDVFGLDNLNSYYDPALKHHRLEKLLPCENYHQVTM  60
            MK L+TG+AGFIG+  AK+L+ +GH V+G+D++N YY  +LK++RL K +  EN+    +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRL-KSIGKENFTFNKV  59

Query  61   DLADREGVAKLFANEKFQRVIHLGAQAGVRHSINAPFEYIDGNVVGTMTILEGCRHNNVE  120
             L + ++++K+F +E+ + V++L+AQAGVR SI+ P  YID+N+VG M ILE  RH N++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLIYASSSSVYGMNPKVPFAESDNVDHPVSLYAATKKSNELMAHAYSNLYDIPTTGLRFF  180
            +LIYASSSSVYG N   PF+ SDN+DHP+SLYAATKKSNELMAH+YS+LY++PTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPAGRPDMAPWLFTEAILKGEPIKVFNKGKMQRDFTYIDDIVEGILRIQNVIPTPNP  240
            TVYGP GRPDMA   FT AI+++++I V+N G+M RDFTY+DDIVE+I R+ +  ++PN 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  D--DEGSNPSTSRAPYRIYNIGNNNPVELATFIDAIEQACGKKAEKILLPMQAGDVVRTY  298
            +  + +++P++S APY++YNIGNN+PV L  F++AIE+  GK A K  + +Q+GDV  TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  299  ADIDALTKATQHKPAVDIYDGVVQFVNWYKDY  330
            A++D L +  + KP   I DGV +FV+WY +Y
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEY  331

461) lpsL in NC_010994


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  293 bits (1098),  Expect = 7e-81, Method: Compositional matrix adjust.
 Identities = 166/331 (51%), Positives = 249/331 (76%), Gaps = 1/331 (0%)

Query  1    MRYFITGTAGFIGFHLARRLLQEGHEVTGFDGLTPYYNVKLKEMRHAALSQFPAFKPVIA  60
            M+ +ITGTAGFIG HLA++L+++GH V G D++  YY+V LKE R  ++++   F     
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   MLEDRPALEAAVLTATPDILIHLAAQAGVRYSLENPEAYIHSNVEGSWNIMEIARRVEVR  120
             LE+   L    +   P+++++LAAQAGVRYS+ENP +YI+SN+ G  NI+E +R+ +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLMLASTSSIYGANATVPFRETDRADEPLTIYAATKKSMELMAHSYAHLHKIPTTAFRFF  180
            +L+ AS+SS+YGAN++ PF  +D  D+PL++YAATKKS ELMAH+Y+HL ++PTT++RFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFAKNMLEGQPIEIYGEGNMSRDFTYIDDLVEAIVRLSAIAPSEEN  240
            TVYGPWGRPDMALFKF+K ++++Q+I++Y +GNM RDFTY+DD+VEAI RL   ++S ++
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  RLDDAAVETLSRQAPFRVVNIGGGQPVSLMDFVETVEKTLGRPAIRLMLAMQKGDVPRTF  300
               +A  +  S  AP++V NIG   PV LM+FVE++E+ LG+ A +  + +Q GDVP T+
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  AAPDLLIALTGYKPDTTLDVGVKAFVDWYLD  331
            A  D L+   ++KP+TT++ GV+ FVDWYL+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLE  330

462) AZC_2261 in NC_009937


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  293 bits (1097),  Expect = 8e-81, Method: Compositional matrix adjust.
 Identities = 166/333 (50%), Positives = 249/333 (75%), Gaps = 1/333 (0%)

Query  1    MRFLVTGTAGFIGFHLAKRLLAGGHVVVGVDGLTPYYDVRLKHSRHAELERHNGFSAVIG  60
            M++L+TGTAGFIG HLAK+L+  GH V+GVD++  YY V LK+ R   + ++N F+    
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKEN-FTFNKV  59

Query  61   MIETPDVLAQAADLAQPDVIIHLAAQAGVRYSLENPKAYVDANLNGSWNVLELARHLKPR  120
             +E  D L++     QP+V+++LAAQAGVRYS+ENP++Y+D+N+ G  N+LE +RH++ +
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLLLASTSSVYGANAKVPFCETDRADEPMTLYAATKKSMEAMAHSYAHLYGVPTTAFRFF  180
            +L+ AS+SSVYGAN+  PF  +D  D+P++LYAATKKS E MAH+Y+HLY +PTT++RFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFVSAILKGEPIDIYGEGRMSRDFTFIDDLVEAVLRLVERAPQTGA  240
            TVYGPWGRPDMALFKF  AI+++++ID+Y +G M RDFT++DD+VEA+ RLV +++    
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  PVGRAGVDSLSPVAPFRVVNIAGGQPVGLLDFVETVEQAVGRPAIRNLLPMQAGDVPRTY  300
              + A+ D+ S+ AP++V NI+   PV L++FVE++E+ +G+ A +N + +Q+GDVP TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  ASAALLEALTGYRPDTPLGVGVPAFVEWYRSYY  333
            A+   L    +++P+T +  GV  FV+WY  YY
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

463) BT_0380 in NC_004663


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  292 bits (1095),  Expect = 1e-80, Method: Compositional matrix adjust.
 Identities = 177/344 (52%), Positives = 258/344 (75%), Gaps = 20/344 (5%)

Query  13   VLVTGAAGFIGANLVKRLLNEFDTVKVIGIDNITEYYDVRLKYERLQELSAYGDRFVFIK  72
            +L+TG+AGFIG++L K+L+++     VIG+D+I +YY V LK +RL+ ++   + F F K
Sbjct  3    ILITGTAGFIGSHLAKKLIKQ--GHYVIGVDSINDYYSVSLKEDRLKSIGK--ENFTFNK  58

Query  73   DSIAKKEIVESIFTNYHPQVVVNLAAQAGVRYSITNPDAYIESNLIGFYNILESCRHHSV  132
              + + + +  +F + +P+VVVNLAAQAGVRYSI NP +YI+SN++GF NILE  RH ++
Sbjct  59   VKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNI  118

Query  133  EHLVYASSSSVYGCNKKVPYSTDDKVDNPVSLYAATKKSNELMAHAYSKLYNIPSTGLRF  192
            ++L+YASSSSVYG N   P+ST D++D+P+SLYAATKKSNELMAH+YS LYN+P+TGLRF
Sbjct  119  QNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRF  178

Query  193  FTVYGPCGRPDMAYFSFTNKLLKGETIQIYNYGNCKRDFTYIDDIVEGIVRIMQH--APE  250
            FTVYGP GRPDMA F FT+ ++++++I++YN GN  RDFTY+DDIVE+I R+++   +P+
Sbjct  179  FTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPN  238

Query  251  K-RNGEDGLPV---PPYKVYNIGNNSPENLLDFVTILQDELIRAGVLPNYYDFESYKELV  306
            K ++G D  P    +PYKVYNIGNNSP  L++FV  +++ L +          E+ K+ +
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGK----------EARKNYM  288

Query  307  PMQPGDVPVTYADTTPLQQDFGFKPSTSLREGLRKFAGWYAKYY  350
             +QPGDVP TYA+   L +D++FKP T++++G+ KF +WY  YY
Sbjct  289  DLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

464) BXY_03140 in NC_021017


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  292 bits (1094),  Expect = 1e-80, Method: Compositional matrix adjust.
 Identities = 171/345 (50%), Positives = 248/345 (72%), Gaps = 26/345 (7%)

Query  1    MKILVTGAAGFIGSKLMGVLASRGDEVVGIDSINNYYDVRLKYGRLSEMGIILNDEFVWN  60
            MKIL+TG+AGFIGS L   L  +G+ V+G+DSIN+YY V LK +RL  +G   +++F   
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG---KENFT--  55

Query  61   QPIQSLRYETCRFIRMSIDDRHAMEELFEREHFEKVVNLAAQAGVRYSITNPYAYLQSNL  120
                        F ++ +++ + +  +F  E+ E VVNLAAQAGVRYSI NP +Y++SN+
Sbjct  56   ------------FNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNI  103

Query  121  AGFLNVLECCRHYEVKHLVFASSSSVYGLNSKVPYSEEDKVDTPVSLYAATKKSNELMAH  180
             GF+N+LEC RH+++++L++ASSSSVYG N+  P+S  D++D P+SLYAATKKSNELMAH
Sbjct  104  VGFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAH  163

Query  181  SYSKLYGLAVTGLRFFTVYGPWGRPDMAPMLFARAISNGEQIKVFNNGDMIRDFTYIDDI  240
            +YS LY L+ TGLRFFTVYGPWGRPDMA   F++AI N++ I V+N+G+M+RDFTY+DDI
Sbjct  164  TYSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDI  223

Query  241  VEGTIRTLDHVPVTQKSSNG---------VAYKIYNIGCSHPVKLMDFIHEIESAMGHEA  291
            VE+  R +   +  +K  +G          +YK+YNIG + PV+LM+F++ IE+ +G EA
Sbjct  224  VEAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEA  283

Query  292  EKIFLPMQPGDVYQTNADTSMLKKEIGYEPMVTLHDGVAKFIQWY  336
             K ++ +QPGDV +T A+   L ++I++ P  T++DGV KF++WY
Sbjct  284  RKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWY  328

465) GLX_11850 in NC_016027


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  292 bits (1092),  Expect = 2e-80, Method: Compositional matrix adjust.
 Identities = 174/334 (53%), Positives = 244/334 (74%), Gaps = 7/334 (2%)

Query  1    MRVLVTGTAGFIGFHVARRLLREGHEVTGIDGMVPYYDVALKHARHAMLREFAQFTCHEF  60
            M++L+TGTAGFIG H+A++L+++GH V G+D++  YY V+LK+ R   +    +FT +  
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   MLEDTQAIAAAFEQSQPELVIHLAAQAGVRHSIENPGSYISANIVGTYNILEQVRQHRPG  120
             LE+ + ++  F + QPE+V++LAAQAGVR SIENP +YI +NIVG  NILE  R+    
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HVMLASTSSVYGANREIPFVESQRCDHPLSLYAATKKATEELGHSYSHIWDIPFTAFRFF  180
            +++ AS+SSVYGAN   PF  S+  DHPLSLYAATKK+ E ++H+YSH+ ++P T++RFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFRFTANTLAGKPIDVYNNGIMERDFTYIDDLVEAICLLMVRPPL---  237
            TVYGPWGRPDMALF+FT   + +++IDVYN+G M RDFTY+DD+VEAI  L+ +P+    
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  238  --RPGEPDPGASPVAPYRVINIGNSQPVSLMAFIAAIEKALGRPCIRNYMPMQPGDVLRT  295
                ++PDPG+S  APY+V NIGN+ PV LM F+ AIE+ LG+   +NYM +QPGDV  T
Sbjct  240  EWSGADPDPGSS-YAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPET  298

Query  296  WADCTALRQLTGFCPATSVQDGVDAFVAWYRDYY  329
             A+   L +  +F P T++QDGV+ FV WY +YY
Sbjct  299  YANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

466) Tresu_1529 in NC_015385


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  292 bits (1092),  Expect = 2e-80, Method: Compositional matrix adjust.
 Identities = 179/339 (53%), Positives = 250/339 (74%), Gaps = 21/339 (6%)

Query  11   IFVTGAAGFIGSFLCKNLLENVSGIKIIGIDCITDYYDVSLKQERLDMLSSLKKDFTFVK  70
            I++TG+AGFIGS L K+L+ +  G  +IG+D I DYY VSLK++RL  ++  K +FTF K
Sbjct  3    ILITGTAGFIGSHLAKKLIKQ--GHYVIGVDSINDYYSVSLKEDRLKSIG--KENFTFNK  58

Query  71   GDIADKSLLDSLFEKYNPAVVVNLAAQAGVRYSIDNPDAYIHSNMIGFYNILECCRHNPV  130
              + +   L  +F   +P VVVNLAAQAGVRYSI+NP +YI+SN++GF NILEC RH  +
Sbjct  59   VKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNI  118

Query  131  EHLVFASSSSVYGSNKKVPYSTEDKVDNPVSLYAATKKSNELFAHAYSKLYKIPCTGLRF  190
            ++L++ASSSSVYG+N   P+ST D++D+P+SLYAATKKSNEL AH+YS LY++P TGLRF
Sbjct  119  QNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRF  178

Query  191  FTVYGPMGRPDMAYFKFTNKLVKGEPIQIYNNGDMYRDFTYVDDIVKGVRAVMQKT----  246
            FTVYGP GRPDMA FKFT+ +V++++I++YN+G+M RDFTYVDDIV ++  +++K     
Sbjct  179  FTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPN  238

Query  247  -------PEATDDGALYKIYNIGNSRPESLMRFVEILENCLIKENIISEQGKKELLPMQP  299
                   P++    A YK+YNIGN+ P  LM FVE +EN L KE      ++K+ + +QP
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKE------ARKNYMDLQP  292

Query  300  GDVYQTFADVSDLEKDFGFKPATTLEQGLGAFAKWYKGY  338
            GDV +T+A+V DL +D++FKP TT+++G+  F  WY  Y
Sbjct  293  GDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEY  331

467) lspL in NC_008380


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  292 bits (1093),  Expect = 2e-80, Method: Compositional matrix adjust.
 Identities = 166/331 (51%), Positives = 246/331 (75%), Gaps = 1/331 (0%)

Query  1    MRYFITGTAGFIGFHLARRLLQEGHDVTGFDGLTPYYNVKLKEMRHAALSQFPAFKPVIA  60
            M+ +ITGTAGFIG HLA++L+++GH V G D++  YY+V LKE R  ++++   F     
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   MLEDRPALEAAVLAAKPDILIHLAAQAGVRYSLENPEAYLRSNVEGSWNILEIARRVEIR  120
             LE+   L    +  +P+++++LAAQAGVRYS+ENP +Y+ SN+ G  NILE +R+ +I+
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLMLASTSSIYGANATVPFRETDRADEPLTIYAATKKSMELMAHSYAHLHKIPTTAFRFF  180
            +L+ AS+SS+YGAN++ PF  +D  D+PL++YAATKKS ELMAH+Y+HL ++PTT++RFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTKNMLAGQPIEIYGEGNMSRDFTYIDDLIEAIVRLSAVVPSEEN  240
            TVYGPWGRPDMALFKFTK ++ +Q+I++Y +GNM RDFTY+DD++EAI RL    +S ++
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  RLENTAVETLSRQAPFRVVNIGGGQPVSLMDFVETVEKALGRPAIRKMLAMQKGDVPRTF  300
                +  +  S  AP++V NIG   PV LM+FVE++E+ LG+ A ++ + +Q GDVP T+
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  AAPDLLVALTGYKPDTTLDVGVKAFVDWYLD  331
            A  D L    ++KP+TT++ GV+ FVDWYL+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLE  330

468) PMT9312_1313 in NC_007577


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  292 bits (1094),  Expect = 2e-80, Method: Compositional matrix adjust.
 Identities = 167/337 (50%), Positives = 257/337 (77%), Gaps = 5/337 (1%)

Query  9    NILVTGAAGFIGYALAERLLKEGEINIIGIDNLNSYYNPALKKRRIEILNQKDENRLWHF  68
            +IL+TG+AGFIG  LA +L+K+G+  +IG+D++N YY+ +LK  R+  + + +      F
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHY-VIGVDSINDYYSVSLKEDRLKSIGKEN----FTF  56

Query  69   LKVDLKDKNKVNEIFEKYNPHLVVNLAAQAGVRYSLENPDTYLESNLLGFLNILEGCRNF  128
             KV L + + ++ +F   +P++VVNLAAQAGVRYS+ENP TY++SN++GF+NILE  R+F
Sbjct  57   NKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHF  116

Query  129  NVEHLIYASSSSVYGGNIIMPYSEDHSVDHPLSLYAATKKSNEMLAHSYSHLFKIPSTGL  188
            N+++LIYASSSSVYG+N   P+S  +++DHPLSLYAATKKSNE++AH+YSHL+++P+TGL
Sbjct  117  NIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGL  176

Query  189  RFFTVYGPYGRPDMAPMIFADSILNRKPINVFNNGDMSRDFTFISDIVEAIYKCCLKKPI  248
            RFFTVYGP GRPDMA   F+ +I+N ++I+V+N+G+M RDFT++ DIVEAI +   K + 
Sbjct  177  RFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPAS  236

Query  249  SNKSFYDHRPEPSTSFAPHRIFNVGSNNPINLMSFIEKLEDELGISAIKKMRPMQPGDVK  308
            +NK   +  P+P++S+AP +++N+G+N+P+ LM F+E +E+ LG  A K+   +QPGDV 
Sbjct  237  PNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVP  296

Query  309  STFADITKLSEWINYHPSTSFNKGIHLFAKWYKDYFK  345
             T+A++  L   I++ P T+++ G++ F  WY +Y+K
Sbjct  297  ETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

469) lspL in NC_011989


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  292 bits (1093),  Expect = 2e-80, Method: Compositional matrix adjust.
 Identities = 161/336 (48%), Positives = 254/336 (76%), Gaps = 2/336 (0%)

Query  1    MRYFITGTAGFIGFHLARRLLQDGHTVTGYDGMTAYYNLKLKEARNAALAQFPNFSGVIG  60
            M+ +ITGTAGFIG HLA++L+++GH V G D++  YY++ LKE R  ++++  NF+    
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   MLEDRDALERAVDQAKPDVIIHLAAQAGVRYSLENPKAYLDSNLIGSWNIVEIARQLQIG  120
             LE+ D L +   + +P+V+++LAAQAGVRYS+ENP++Y+DSN++G  NI+E +R+++I 
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLMLASTSSIYGANPQVPFRETDRADEPMTFYAASKKGMELMAHSYAHLYKVPTTAFRFF  180
            +L+ AS+SS+YGAN   PF  +D  D+P+++YAA+KK+ ELMAH+Y+HLY++PTT++RFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFMKAMLADEAIEIYGEGKMSRDFTYIDDLIDSVIALSAIAPSEEN  240
            TVYGPWGRPDMALFKF KA++ D+AI++Y +G+M RDFTY+DD+++++  L    P+  N
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVK-KPASPN  238

Query  241  RVRTPENLDTLSHNAPFRVINIGGGQPIALMDFIETIETIMGRPTKRKMLPMQQGDVPRT  300
            + ++  + D  S  AP++V NIG   P+ LM+F+E+IE  +G+ ++++ + +Q GDVP T
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPET  298

Query  301  FASPDLLVALTGQKPTTTLDVGVKATMDWYLEHYRQ  336
            +A+ D L    + KP TT++ GV+  +DWYLE Y++
Sbjct  299  YANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

470) PMM1210 in NC_005072


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  291 bits (1090),  Expect = 3e-80, Method: Compositional matrix adjust.
 Identities = 179/336 (54%), Positives = 256/336 (77%), Gaps = 8/336 (2%)

Query  4    ILVTGSAGFIGSSLSIKLVHKGFRVIGVDNLNSYYSVSLKKDRLKEIIKST-KFNKGKYE  62
            IL+TG+AGFIGS L+ KL+ +G  VIGVD++N YYSVSLK DRLK I K    FNK K E
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVKLE  62

Query  63   GFNFSIENINELEKLFTKYKPKFVVNLAAQAGVRYSLIDPHQYVQSNLVGFHNIIYLSKK  122
             ++       +L K+F   +P  VVNLAAQAGVRYS+ +P+ Y++SN+VGF NI+  S+ 
Sbjct  63   NYD-------DLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRH  115

Query  123  YDVRNFIYASSSSVYGGNTNMPFNESQSVDHPVSFYAATKKCNEVIAHSYSHIYDLPTTG  182
            ++++N+IYASSSSVYG+NT+ PF+ S+++DHP+S+YAATKK NE++AH+YSH+Y+LPTTG
Sbjct  116  FNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTG  175

Query  183  LRFFTVYGPWGRPDMAPMIFTKAILSGDEINIFNNGEMMRDFTYiddvvdgivgCVYKSA  242
            LRFFTVYGPWGRPDMA   FTKAI++++ I+++N+G+MMRDFTY+DD+V++I   V K+A
Sbjct  176  LRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPA  235

Query  243  ESSDNFNRDKPDPSISFAKHKIFNVGNGNPIKLMKFIELLELSIGKSAKKIFKPMQTGDV  302
             ++ + +   PDP+ S+A  K++N+GN +P++LM F+E +E  +GK A+K +  +Q GDV
Sbjct  236  SPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDV  295

Query  303  IATSANINKLSDWIGYEPKINLTEGIGKFVKWYKEY  338
              T AN++ L   I++ P   + +G+ KFV WY EY
Sbjct  296  PETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEY  331

471) OB2883 in NC_004193


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  291 bits (1091),  Expect = 3e-80, Method: Compositional matrix adjust.
 Identities = 179/340 (53%), Positives = 254/340 (75%), Gaps = 25/340 (7%)

Query  9    LITGAAGFIGHFLSRRLLDQGFNVIGLDNVNDYYDVNLKETRLKLLQPYNNFTFIKGDIS  68
            LITG+AGFIG  L+++L+ QG  VIG+D++NDYY V+LKE RLK +   +NFTF K  + 
Sbjct  4    LITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKVKLE  62

Query  69   DKELVLSIFEEYKPSIVVNLAAQAGVRYSIENPDVYMQSNVIGFYNILEACRHHLVDHLI  128
            + + +  +F + +P +VVNLAAQAGVRYSIENP  Y++SN++GF NILE  RH  +++LI
Sbjct  63   NYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNLI  122

Query  129  YASSSSVYGANKKVPFEETDFVDNPVSLYASTKKSNELMAHTYSHLYGIPATGLRFFTVY  188
            YASSSSVYGAN   PF  +D +D+P+SLYA+TKKSNELMAHTYSHLY +P+TGLRFFTVY
Sbjct  123  YASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTVY  182

Query  189  GPMGRPDMAYFGFTNKLFHGEPIQIFNNGDFENDLYRDFTYIDDIVEGIERLI--PHSPV  246
            GP GRPDMA F FT+ + ++++I+++N+G    ++ RDFTY+DDIVE+I RL+  P SP 
Sbjct  183  GPWGRPDMALFKFTKAIVNDQAIDVYNHG----NMMRDFTYVDDIVEAISRLVKKPASPN  238

Query  247  GE------------VQHKVYNIGNSNPEKLMVFIETLEKCLSNSLGEKVEFEKHFEPIKP  294
             E               KVYNIGN++P +LM F+E++E+ L++      E  K++  ++P
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGK------EARKNYMDLQP  292

Query  295  GDVPATYASTKQLYDAVGFRPQTSIEEGLQQFTDWYVEYY  334
            GDVP TYA+  +L+  ++F+P+T+I++G+++F DWY+EYY
Sbjct  293  GDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

472) BN69_2304 in NC_018485


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  291 bits (1090),  Expect = 3e-80, Method: Compositional matrix adjust.
 Identities = 165/332 (50%), Positives = 248/332 (75%), Gaps = 6/332 (1%)

Query  1    MRVFVTGTAGFIGFHLAKRLLEAGHLVDGFDGMTPYYDPRLKEARRAILLRTNGYRDTIA  60
            M++++TGTAGFIG HLAK+L+  GH V G D++  YY   LKE R   + + + +     
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   MLEDMEALTRAAEQAAPDVIIHLAAQAGVRYSLQNPRAYVDANLVGAFNVMEIARLLKPR  120
             LE+ + L++   +  P+V+++LAAQAGVRYS++NPR+Y+D+N+VG  N++E +R ++ +
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HFLWASTSSVYGASPTVPFHESDRTDFPLTLYAATKKAGEAMAHSYAHLWSIPTTMFRFF  180
            +++ AS+SSVYGA+ + PF  SD  D PL+LYAATKK+ E MAH+Y+HL ++PTT +RFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMAPLKFVDAIENDRVIDIYNHGDMSRDFTYVADLVESVVRLID--CVPER  238
            TVYGPWGRPDMA +KF  AI ND+ ID+YNHG+M RDFTYV D+VE++ RL+     P++
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  239  D---SGDDSVSPVAPLRVVNIGRGAPVKLLDFIETIERALGKKAKRNYLDMQPGDVPRTF  295
            +   ++ D+ S+ AP +V NIG  +PV+L++F+E+IE  LGK A++NY+D+QPGDVP T+
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  296  ASADLLERLTGYRPQTSLDEGVAALVDWYRAY  327
            A+ D L R  +++P+T++++GV  +VDWY  Y
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEY  331

473) lspL2 in NC_014034


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  291 bits (1089),  Expect = 4e-80, Method: Compositional matrix adjust.
 Identities = 172/337 (52%), Positives = 252/337 (75%), Gaps = 7/337 (2%)

Query  7    RILITGTAGFIGFHLARLLLAEGWRVQGYDGMTDYYDVALKHDRHAILRAHPNFTATEAM  66
            +ILITGTAGFIG HLA+ L+ +G  V G D++ DYY V+LK+DR   + +  NFT     
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKVK  60

Query  67   LEDQPRFDAVADAF---RPEVIVHLAAQAGVRYSLENPRAYLDSNVIGTFSVIEAARRLQ  123
            LE+   +D ++  F   +PEV+V+LAAQAGVRYS+ENPR+Y+DSN++G  +++E +R+++
Sbjct  61   LEN---YDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFN  117

Query  124  VKHLLIASTSSVYGANPKMPFAETDKADTQLTIYAATKKANESMAHAYAHLWNLPVTMFR  183
            +++L+ AS+SSVYGAN   PF+ +D+ D  L++YAATKK+NE MAH+Y+HL NLP T +R
Sbjct  118  IQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLR  177

Query  184  FFTVYGPWGRPDLALYKFVDAILDDRPIDIYNHGEMYRDFTYIDDLVRGIRLLIDAVPQR  243
            FFTVYGPWGRPD+AL+KF  AI++D++ID+YNHG+M RDFTY+DD+V +I  L+   +  
Sbjct  178  FFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASP  237

Query  244  PEDGVVPAGDSLSPVAPFRIVNIGNSDKVRLLDFVEAIEACLGKTALRNYLPMQKGDVPA  303
              +   +  D+ S+ AP+++ NIGN+  VRL++FVEAIE  LGK A +NY+ +Q GDVP 
Sbjct  238  NKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPE  297

Query  304  TFADATLLHSLTGYRPQTDFRDGIARFVDWYRGYYNK  340
            T+A+   L    +++P+T ++DG+ +FVDWY  YY+K
Sbjct  298  TYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

474) Rleg_3246 in NC_012850


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  291 bits (1088),  Expect = 4e-80, Method: Compositional matrix adjust.
 Identities = 165/331 (50%), Positives = 247/331 (75%), Gaps = 1/331 (0%)

Query  1    MRYFITGTAGFIGFHLARRLLQEGHDVTGFDGLTPYYNVKLKEMRHAALSQFPAFRPVIS  60
            M+ +ITGTAGFIG HLA++L+++GH V G D++  YY+V LKE R  ++++   F     
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   MLEDRPALEAAVLAAKPDILIHLAAQAGVRYSLENPEAYLRSNVEGSWNIMEIARRVEIR  120
             LE+   L    +  +P+++++LAAQAGVRYS+ENP +Y+ SN+ G  NI+E +R+ +I+
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLMLASTSSIYGANATVPFHETDRADEPLTIYAATKKSMELMAHSYAHLHKIPTTAFRFF  180
            +L+ AS+SS+YGAN++ PF  +D  D+PL++YAATKKS ELMAH+Y+HL ++PTT++RFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFTKNMLEGQPIEIYGEGNMSRDFTYIDDLIEAIVRLSAVVPSEEN  240
            TVYGPWGRPDMALFKFTK ++++Q+I++Y +GNM RDFTY+DD++EAI RL    +S ++
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  RLENTAVETLSRQAPFRVVNIGGGQPVSLMDFVETVEKALGRPAIRKMLAMQKGDVPRTF  300
                +  +  S  AP++V NIG   PV LM+FVE++E+ LG+ A ++ + +Q GDVP T+
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  AAPDLLVALTGYKPDTTLDVGVKAFVDWYLD  331
            A  D L    ++KP+TT++ GV+ FVDWYL+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLE  330

475) llh_0450 in NC_017492


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  290 bits (1084),  Expect = 1e-79, Method: Compositional matrix adjust.
 Identities = 179/345 (52%), Positives = 259/345 (76%), Gaps = 20/345 (5%)

Query  11   ILVTGAAGFIGSNLVKRIYQEAPSATVIGIDNMNTYYDVALKEFRLNELAKYPTFTFVKG  70
            IL+TG+AGFIGS+L K++ +++    VIG+D++N YY V+LKE RL+ ++K   FTF K 
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGH--YVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  71   NIADKALITELFEKYKPSVVVNLAAQAGVRYSITNPDAYVESNLVGFFNILEACRHCESL  130
            ++ +   ++ +F   +P VVVNLAAQAGVRYSI NP +Y++SN+VGF NILE  RH + +
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFN-I  118

Query  131  EHLVYASSSSVYGSNKKVPYSTDDKVDNPVSLYAATKKSNELMAHAYSKLYNIPSTGLRF  190
            ++L+YASSSSVYG+N   P+ST D++D+P+SLYAATKKSNELMAH+YS LYN+P+TGLRF
Sbjct  119  QNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRF  178

Query  191  FTVYGPAGRPDMAYFGFTNKLVKGETIKIFNYGNCKRDFTYVDDIVEGVVRVMKK--APD  248
            FTVYGP GRPDMA F FT+ +V++++I ++N GN  RDFTYVDDIVE++ R++KK  +P+
Sbjct  179  FTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPN  238

Query  249  KK----NGEDGLPIPPYAVYNIGNQNPENLLDFVQILSEELVRAKVLPEDYDFEAHKELV  304
            K     + + G + +PY VYNIGN++P  L++FV+ + + L +          EA+K+ +
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGK----------EARKNYM  288

Query  305  SMQPGDVPVTYADTSALERDFGHKPSTSLRTGLRNFAEWYAEFYK  349
             +QPGDVP TYA+   L RD++ KP T+++ G+ +F +WY E+YK
Sbjct  289  DLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

476) RPE_1454 in NC_008435


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  289 bits (1082),  Expect = 1e-79, Method: Compositional matrix adjust.
 Identities = 174/329 (53%), Positives = 239/329 (73%), Gaps = 9/329 (2%)

Query  1    MTILVTGAAGFIGFHVARELVNAGQRVIGVDSLNDYYDPALKRARLDMLRDLPGFEFLQa  60
            M IL+TG+AGFIG H+A+ L++ G+ VIGVDS+NDYY  +LK  RL  + +   F F + 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  61   dladraataalfaKHKFPVVIHLAAQAGVRYSLQHPHAYIDANLQGFANVLEGCRHNGCR  120
             L +    + +F  ++  VV++LAAQAGVRYS+++P++YID+N+ GF N+LE  RH   +
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGANTKLPFAVSDRTDHPISLYAATKKANEVMAYSYSHLYKLPTTGLRFF  180
            +L+YASSSSVYGANT  PF+ SD  DHP+SLYAATKK+NE+MA +YSHLY+LPTTGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TIYGPWYRPDMALFLFAKAIVAGEPIKLFNHGKMRRDFTYVDDVTRVISRLIDHVPEAGE  240
            T+YGPW RPDMALF F+KAIV +++I ++NHG+M RDFTYVDD+   ISRL+   + +  
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  TQFGVAPA--------RIYNVGNHHPEELMHVVGLLEQELGRVAAKEMLPMQPGDVPATF  292
               G  P         ++YN+GN+ P  LM+ V  +E+ LG+ A K+ + +QPGDVP T+
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  293  ADVDDLIRDVGFSPSTPIADGLREFARWY  321
            A+VDDL+RD++F P T I DG+  F  WY
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWY  328

477) lpsL in NC_016812


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  289 bits (1083),  Expect = 1e-79, Method: Compositional matrix adjust.
 Identities = 173/336 (52%), Positives = 251/336 (75%), Gaps = 4/336 (1%)

Query  1    MRYLITGTAGFIGFHVAKRLIDDGHFVVGFDGMTPYYDVTLKQRRHAILERSNGFKAVTA  60
            M+ LITGTAGFIG H+AK+LI +GH+V+G D++  YY V+LK+ R   + + N F     
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKEN-FTFNKV  59

Query  61   MledraaldraaelaePEVIIHLAAQAGVRYSLENPKAYVDANLLGSWNILELARAIGPK  120
             LE+   L +     +PEV+++LAAQAGVRYS+ENP++Y+D+N++G  NILE +R +  +
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLMLASTSSIYGANEKIPFAEADRADEPMTLYAATKKSMELMAHSYAHLYKVPTTAFRFF  180
            +L+ AS+SS+YGAN   PF+ +D  D+P++LYAATKKS ELMAH+Y+HLY++PTT++RFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFVDAILNGRPIDIYGEGRMSRDFTYIDDLVEGILRL-SHVAPSEA  239
            TVYGPWGRPDMALFKF  AI+N+++ID+Y +G M RDFTY+DD+VE+I RL    A+++ 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  240  NRVGPDLAQDTLSGHAPFRVVNVGGGQPVDLMTFVETVEKAVGRPAVRNMLPMQMGDVPR  299
            ++ G+D   D  S+ AP++V N+G   PV LM FVE++E+ +G+ A +N + +Q GDVP 
Sbjct  240  EWSGAD--PDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPE  297

Query  300  TYASPDLLEALTGFKPTMPIEEGVARFVEWYEQYYR  335
            TYA+ D L    +FKP   I++GV +FV+WY +YY+
Sbjct  298  TYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

478) BF638R_1542 in NC_016776


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  288 bits (1080),  Expect = 2e-79, Method: Compositional matrix adjust.
 Identities = 180/347 (52%), Positives = 254/347 (74%), Gaps = 20/347 (5%)

Query  12   TILVTGAAGFIGSNLVKRLLTDFNNIKVIGIDSITDYYDVNLKYKRLTEIDSLSKDWTFL  71
             IL+TG+AGFIGS+L K+L+ + +   VIG+DSI DYY V+LK  RL  I+    + TF 
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHY--VIGVDSINDYYSVSLKEDRLKSIGK--ENFTFN  57

Query  72   KGSIADKALIENVFTENKIDVVVNLAAQAGVRYSITNPGSYIESNLIGFYNILEVCRHHE  131
            K  + +   + +VF +++ +VVVNLAAQAGVRYSI NP +YI+SN++GF NILE  RH +
Sbjct  58   KVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFN  117

Query  132  VAHLVYASSSSVYGSNKKIPYSTDDKVDNPVSLYAATKKSNELMAHAYSKLYNIPSTGLR  191
            + +L+YASSSSVYG+N   P+ST D++D+P+SLYAATKKSNELMAH+YS LYN+P+TGLR
Sbjct  118  IQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLR  177

Query  192  FFTVYGPAGRPDMAYFGFTNKLVKGETIKIFNYGNCKRDFTYVDDIVEGVVRVMRHAPER  251
            FFTVYGP GRPDMA F FT+ +V++++I ++N GN  RDFTYVDDIVE++ R+++ ++  
Sbjct  178  FFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASP  237

Query  252  ---RTGEDGLPV---PPYIIYNIGNNQPENLLDFVTILQEELVRAGVLPAEYDFEAHKEL  305
               ++G D  P    +PY +YNIGNN P  L++FV  +++ L +          EA+K+ 
Sbjct  238  NKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGK----------EARKNY  287

Query  306  VPMQPGDVPVTYADTTPLVQDFDFKPSTPLREGLCKFAEWYNGYYNK  352
            + +QPGDVP TYA+   L +D+DFKP T +++G+ KF +WY  YY+K
Sbjct  288  MDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

479) Rumal_0412 in NC_014833


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  288 bits (1080),  Expect = 2e-79, Method: Compositional matrix adjust.
 Identities = 179/350 (52%), Positives = 255/350 (73%), Gaps = 24/350 (6%)

Query  8    NVFVTGAAGFIGSNLVTKLFGMLDGVCIIGLDNMNDYYDVSLKEYRIAEIEKAEKNSKCT  67
            ++++TG+AGFIGS+L  KL  + +G  +IG+D++NDYY VSLKE R+  I K +      
Sbjct  2    KILITGTAGFIGSHLAKKL--IKQGHYVIGVDSINDYYSVSLKEDRLKSIGKEN------  53

Query  68   FKFYKGDLADKALITKIFEEHKPEIVVNLAAQAGVRYSIENPDAYINSNMIGFYNILEAC  127
            F F K  L +   ++K+F +++PE+VVNLAAQAGVRYSIENP +YI+SN++GF NILE  
Sbjct  54   FTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECS  113

Query  128  RHNPVEHLVYASSSSVYGGNKKVPFSTDDMVDHPVSLYAATKKSNELFAHAYSKLYNIPT  187
            RH  +++L+YASSSSVYG+N   PFST D +DHP+SLYAATKKSNEL AH+YS LYN+PT
Sbjct  114  RHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPT  173

Query  188  TGLRFFTVYGPAGRPDMAYFGFTNKLVNGETIKIFNYGNCKRDFTFVDDIVEGIVRVMQK  247
            TGLRFFTVYGP GRPDMA F FT+ +VN+++I ++N GN  RDFT+VDDIVE+I R+++K
Sbjct  174  TGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKK  233

Query  248  --APEKK----NGEDGLPVPPYALYNIGGGTPENLLDFVHILSEELVRAGVLPEDYDFDA  301
              +P+K     + + G + +PY +YNIG  +P  L++FV+ + + L +          +A
Sbjct  234  PASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGK----------EA  283

Query  302  HKELVPMQPGDVPVTYADSTALERDFGFKPTIDLRTGLRRFAEWYKNFYM  351
            +K+ + +QPGDVP TYA+   L RD++FKP   ++ G+ +F +WY ++Y 
Sbjct  284  RKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

480) NGR_c08380 in NC_012587


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  288 bits (1078),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 171/336 (51%), Positives = 251/336 (75%), Gaps = 4/336 (1%)

Query  1    MRYLITGTAGFIGFHVAKRLIDDGHFVVGFDGMTPYYDVTLKQRRHAILERSNGFKAVTA  60
            M+ LITGTAGFIG H+AK+LI +GH+V+G D++  YY V+LK+ R   + + N F     
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKEN-FTFNKV  59

Query  61   MledraaldraaelaePEVIIHLAAQAGVRYSLENPKAYVDANLLGSWNILELARAIGPK  120
             LE+   L +     +PEV+++LAAQAGVRYS+ENP++Y+D+N++G  NILE +R +  +
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLMLASTSSIYGANEKIPFAEADRADEPMTLYAATKKSMELMAHSYAHLYKVPTTAFRFF  180
            +L+ AS+SS+YGAN   PF+ +D  D+P++LYAATKKS ELMAH+Y+HLY++PTT++RFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFVDAILNGRPIDIYGEGRMSRDFTYIDDLVEGILRL-SHVAPSEA  239
            TVYGPWGRPDMALFKF  AI+N+++ID+Y +G M RDFTY+DD+VE+I RL    A+++ 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  240  NRVGPDLAQDTLSGHAPFRVVNVGGGQPVDLMTFVDTVEKAVGRPAVRNMLPMQMGDVPR  299
            ++ G+D   D  S+ AP++V N+G   PV LM FV+++E+ +G+ A +N + +Q GDVP 
Sbjct  240  EWSGAD--PDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPE  297

Query  300  TYASPDLLEALTGFKPMMPVEEGVARFVEWYEQYYR  335
            TYA+ D L    +FKP   +++GV +FV+WY +YY+
Sbjct  298  TYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

481) CbC4_0718 in NC_015425


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  287 bits (1075),  Expect = 4e-79, Method: Compositional matrix adjust.
 Identities = 181/341 (54%), Positives = 249/341 (74%), Gaps = 17/341 (4%)

Query  13   LVTGAAGFIGFYLSKKLLEKGCRVIGIDNINDYYDVNLKYTRLHELEAFEKFIFIKGSIS  72
            L+TG+AGFIG  L+KKL+ +G  VIG+D+INDYY V+LK  RL  +   E+F F K  + 
Sbjct  4    LITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKVKLE  62

Query  73   DKSMIMDTFKNCKPNIVVNLAAQAGVRYSIENPDVYIESNIVGFFNILEACRYNNVEHLV  132
            +   +   F + +P++VVNLAAQAGVRYSIENP  YI+SNIVGF NILE  R  N+++L+
Sbjct  63   NYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNLI  122

Query  133  YASSSSVYGSNKKVPFEECDFVDNPVSLYAATKKSNELMAHTYSHLYNIPATGLRFFTVY  192
            YASSSSVYG+N   PF   D +D+P+SLYAATKKSNELMAHTYSHLYN+P+TGLRFFTVY
Sbjct  123  YASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTVY  182

Query  193  GPMGRPDMAYFGFANKYFKGEPIKIFNNGDFEHDLYRDFTYIDDIVEGIQRLLSNPPSRL  252
            GP GRPDMA F F++   ++++I ++N+G    ++ RDFTY+DDIVE+I RL+ +P+S  
Sbjct  183  GPWGRPDMALFKFTKAIVNDQAIDVYNHG----NMMRDFTYVDDIVEAISRLVKKPASPN  238

Query  253  SENSVQEI------AAHRVFNIGNNNPEKLMTFITTLEKCLSKSLDRKIIFKKIFEPLKA  306
             E S  +       A+ +V+NIGNN+P +LM F+ ++E+ L+K        +K +  L++
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEA------RKNYMDLQP  292

Query  307  GDVPATYASTDKLQEYIGFKPSTSIEEGLQKFAEWYVKYYK  347
            GDVP TYA+ D L   I+FKP T+I++G++KF +WY+ YYK
Sbjct  293  GDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

482) RHECIAT_PC0000849 in NC_010997


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  287 bits (1076),  Expect = 4e-79, Method: Compositional matrix adjust.
 Identities = 171/334 (52%), Positives = 247/334 (74%), Gaps = 4/334 (1%)

Query  1    MRFLVTGTGGFIGFHLARRLLEEGHSVTGFDGMTRYYDVSLKERRHAILSSYGNFQPIIA  60
            M++L+TGT+GFIG HLA++L+ +GH V G D++  YY VSLKE R   ++   NF     
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   MLENRERLTEAFNIAQPDVVVHLAAQAGVRYSLENPDAYIGSNLVGSWNVLDLCRQFRPN  120
             LEN + L+  F   QP+VVV+LAAQAGVRYS+ENP +YI+SN+VG  N+L+  R+F  +
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLLLASTSSIYGANSKIPFEESDKADEPLTLYAASKKSMEVMAHSQSHLHKIPTTAFRFF  180
            +L+ AS+SS+YGAN+  PF  SD+ D+PL+LYAA+KKS E+MAH+ SHL ++PTT++RFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFVSAILNGKPIDVYGHGQMSRDFTYIDDLVEAIVRLIPVIPQASA  240
            TVYGPWGRPDMALFKF  AI+N+++IDVY HG+M RDFTY+DD+VEAI RL+   + ++ 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  P-ADAAIDNVSMQAPFRIVNIGGGQPVGLETFIETVEQALGQKALRNMLPMQQGDVPRTF  299
              ++A  D  S  AP+++ NIG   PV L  F+E++E+ LG+ A +N + +Q GDVP T+
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  300  AA-PELLRALTGYTPQTPVAEGVRRFVEWYRQAF  332
            A   +L+R + ++ P+T + +GV +FV+WY + +
Sbjct  300  ANVDDLFRDI-DFKPETTIQDGVNKFVDWYLEYY  332

483) RPD_1617 in NC_007958


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  287 bits (1074),  Expect = 5e-79, Method: Compositional matrix adjust.
 Identities = 170/331 (52%), Positives = 234/331 (71%), Gaps = 14/331 (4%)

Query  6    VLVTGAAGFIGYHLSRELLDAGYDVVGLDNVNDYYDPALKSARLDLLRDNPRFDFVKLDL  65
            +L+TG+AGFIG HL++ L+  G  V+G+D++NDYY  +LK  RL  + ++  F F K+ L
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKVKL  61

Query  66   KDRSATDAVFAKGRFPVVFHLAAQAGVRYSISNPHAYADSNLGAFVNVLEGCRHNGCRHL  125
             +      VF   +  VV +LAAQAGVRYSI NP++Y DSN+ +F+N+LE  RH   ++L
Sbjct  62   ENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNL  121

Query  126  VYASSSSVYGANAKLPFSVGDRTDHPISLYAATKKSNELMAHSYSHLFGLRTTGLRFFTV  185
            +YASSSSVYGAN+  PFS +D  DHP+SLYAATKKSNELMAH+YSHL+ L TTGLRFFTV
Sbjct  122  IYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTV  181

Query  186  YGPWYRPDMAIFLFAKAISSGAPIRLFNHGRMRRDFTHISDVTRVMRRLLDVPE------  239
            YGPW RPDMA+F F+KAI ++ +I ++NHG M RDFT + D+   + RL+  P       
Sbjct  182  YGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEW  241

Query  240  NAGDPTA-------RVYNVGNHRPEELMRVVDLLEAEFGRKAEKELLPMQPGDVPETFAD  292
            +++DP +       +VYN+GN+ P  LM  V+ +E  +G+ A K+ + +QPGDVPET+A+
Sbjct  242  SGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYAN  301

Query  293  IDDLKRDFGFSPETRIEDGIRDFASWYRKYY  323
            +DDL RD++F PET I+DG+  F  WY  YY
Sbjct  302  VDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

484) Sphch_2557 in NC_015593


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  287 bits (1074),  Expect = 5e-79, Method: Compositional matrix adjust.
 Identities = 163/335 (49%), Positives = 243/335 (73%), Gaps = 10/335 (2%)

Query  1    MTILVTGAAGFIGMAVADRLLSQGRAVFGIDNMNDYYPVSLKRDRIAALHERHGGLFTFA  60
            M IL+TG+AGFIG  +A +L+ QG+ V+G+D++NDYY+VSLK DR+ ++   +   FTF 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKEN---FTFN  57

Query  61   ELDFADMDALQAALHDHPIDAIVHLGAQAGVRYSLINPHAYVRSNLAGHVNMLEVARERR  120
             + + + D L   + D+  + +V+L+AQAGVRYS+ NP++Y+ SN+ G +N+LE +R+  
Sbjct  58   KVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFN  117

Query  121  VRHLVYASSSSVYGGNDSLPFRVEDRADHPVSLYAATKRADELMSETYAHLFRIPMTGLR  180
            +++L+YASSSSVYG+N S PF   D  DHP+SLYAATK+++ELM++TY+HL+ +P TGLR
Sbjct  118  IQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLR  177

Query  181  FFTVYGPWGRPDMAMWIFTSKILAGQPIPVFNHGRMQRDFTYIDDIVSGVIGCLDHAPE-  239
            FFTVYGPWGRPDMA+  FT  I+ +Q+I V+NHG M RDFTY+DDIV + I+ L   P  
Sbjct  178  FFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEA-ISRLVKKPAS  236

Query  240  -----DDGAAKAGGSRSPHRLYNIGNNRPEELMHLISILEDACGRKAEIDFQPMQPGDVP  294
                  ++ + +G+S +P ++YNIGNN P  LM+++  +E+  G+ A  ++  +QPGDVP
Sbjct  237  PNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVP  296

Query  295  ATFADISAIAQDIGFAPTTGIEVGVPRFVDWYRAY  329
             T+A++  + +DI+F P T I+ GV +FVDWY  Y
Sbjct  297  ETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEY  331

485) lspL in NC_018000


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  287 bits (1073),  Expect = 6e-79, Method: Compositional matrix adjust.
 Identities = 174/336 (52%), Positives = 248/336 (74%), Gaps = 4/336 (1%)

Query  1    MRYLITGTAGFIGFHVAKRLIDDGHFVVGFDGMTPYYDVKLKERRHAILERSNGFKAVTA  60
            M+ LITGTAGFIG H+AK+LI +GH+V+G D++  YY V LKE R   + + N F     
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKEN-FTFNKV  59

Query  61   MledraaldraaelaePEVIIHLAAQAGVRYSLENPKAYVDANLMGSWNILELARTIGPK  120
             LE+   L +     +PEV+++LAAQAGVRYS+ENP++Y+D+N++G  NILE +R +  +
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLMLASTSSIYGANEKIPFAEADRTDEPMTLYAATKKSMELMAHSYAHLYKVPTTAFRFF  180
            +L+ AS+SS+YGAN   PF+ +D  D+P++LYAATKKS ELMAH+Y+HLY++PTT++RFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFVDAILNGRPIDVYGEGRMSRDFTYIDDLVEGILRL-SHVAPSEA  239
            TVYGPWGRPDMALFKF  AI+N+++IDVY +G M RDFTY+DD+VE+I RL    A+++ 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  240  NRVGPDLAQDTLSRQAPFRVVNVGGGQPVELMTFVETVERAVGRPAVRNMLPMQMGDVPR  299
            ++ G+D   D  S  AP++V N+G   PV LM FVE++E  +G+ A +N + +Q GDVP 
Sbjct  240  EWSGAD--PDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPE  297

Query  300  TYASPDLLEALTGFKPTMPVEEGVARFVEWYEQYYR  335
            TYA+ D L    +FKP   +++GV +FV+WY +YY+
Sbjct  298  TYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

486) SJA_C1-31330 in NC_014006


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  287 bits (1073),  Expect = 6e-79, Method: Compositional matrix adjust.
 Identities = 160/335 (48%), Positives = 245/335 (74%), Gaps = 10/335 (2%)

Query  1    MTILVTGAAGFIGMAVADRLLSEGRAVFGIDNMNDYYPVSLKRDRIAALHQRHGGLFTFA  60
            M IL+TG+AGFIG  +A +L+ +G+ V+G+D++NDYY+VSLK DR+ ++ + +   FTF 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKEN---FTFN  57

Query  61   ELDFADMDALQAALHDHPVDAIIHLGAQAGVRYSLINPHAYVRSNLAGHVNMLEVARERR  120
             + + + D L   + D+  + +++L+AQAGVRYS+ NP++Y+ SN+ G +N+LE +R+  
Sbjct  58   KVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFN  117

Query  121  VRHLVYASSSSVYGGNDTLPFRVEDRADHPVSLYAATKRADELMSETYAHLFRIPMTGLR  180
            +++L+YASSSSVYG+N + PF   D  DHP+SLYAATK+++ELM++TY+HL+ +P TGLR
Sbjct  118  IQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLR  177

Query  181  FFTVYGPWGRPDMAMWIFTSKILSGQPIPVFNHGRMQRDFTYIDDIVSGVIGCLDHAPE-  239
            FFTVYGPWGRPDMA+  FT  I+++Q+I V+NHG M RDFTY+DDIV + I+ L   P  
Sbjct  178  FFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEA-ISRLVKKPAS  236

Query  240  -----DDGAAKAGGSRSPHRLYNIGNNRPEELMHLISVLEEACGRKAEIDFQPMQPGDVP  294
                  ++ + +G+S +P ++YNIGNN P  LM+++  +E+  G+ A  ++  +QPGDVP
Sbjct  237  PNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVP  296

Query  295  ATFADISAIAQDIGFAPTTGIEVGVPRFVDWYRAY  329
             T+A++  + +DI+F P T I+ GV +FVDWY  Y
Sbjct  297  ETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEY  331

487) Dtox_3989 in NC_013216


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  286 bits (1070),  Expect = 1e-78, Method: Compositional matrix adjust.
 Identities = 186/342 (55%), Positives = 250/342 (74%), Gaps = 25/342 (7%)

Query  17   LITGAAGFIGFFLSKRLLEQGCRVIGIDNINDYYDVKLKYARLEQLKLFEQFTFVEGDIS  76
            LITG+AGFIG  L+K+L+ QG  VIG+D+INDYY V LK  RL  +   E+FTF    + 
Sbjct  4    LITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKVKLE  62

Query  77   DKDVITGTFQEYRPNIVVNLAAQAGVRYSLENPDAYIQSNIIGFFNILEACRYSPVDHLV  136
            + D ++  F + +P++VVNLAAQAGVRYS+ENP +YI+SNI+GF NILE  R   +++L+
Sbjct  63   NYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNLI  122

Query  137  YASSSSVYGSNKKVPFEESDFVDHPVSLYAATKKSNELMAHTYSHLYKIPSTGLRFFTVY  196
            YASSSSVYG+N   PF  SD +DHP+SLYAATKKSNELMAHTYSHLY++P+TGLRFFTVY
Sbjct  123  YASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTVY  182

Query  197  GPMGRPDMAYFGFTQRYFAGEPIRIFNNGDFENDLYRDFTYIDDIVEGIERLLCK--APD  254
            GP GRPDMA F FT+    +++I ++N+G    ++ RDFTY+DDIVE+I RL+ K  +P+
Sbjct  183  GPWGRPDMALFKFTKAIVNDQAIDVYNHG----NMMRDFTYVDDIVEAISRLVKKPASPN  238

Query  255  KT------------VPHKVFNIGNNSPEKLMVFIETLEKCLSKSAGREIVFNKIYEPIKP  302
            K              P KV+NIGNNSP +LM F+E++E+ L+K A       K Y  ++P
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEA------RKNYMDLQP  292

Query  303  GDVPATYADTGLLQEAVGFKPETSIEEGLQRFADWYVEYYKM  344
            GDVP TYA+ + L   ++FKPET+I++G+++F DWY+EYYK 
Sbjct  293  GDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

488) lspL in NC_020911


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  286 bits (1070),  Expect = 1e-78, Method: Compositional matrix adjust.
 Identities = 178/335 (54%), Positives = 243/335 (73%), Gaps = 4/335 (1%)

Query  3    KALVTGSAGFIGYHLCKHLLAAGFDVIGFDAMTDYYDVRLKERRQANLLQSSGFRAVNDR  62
            K L+TG+AGFIG HL K L+  G  VIG D++ DYY V LKE R  ++     F   + +
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKVK  60

Query  63   LEADGVLMDLVAAEQPDFVVHLAGQAGVRYSIVEPRSYIDANIIGTFNLLEAVRATPVKH  122
            LE  + L  +   EQP+ VV+LA+QAGVRYSI +PR+YID+NI+G  N+LE  R   +++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  123  LLLASTSSAYGANTKMPYSETDKADTQMSFYAATKKSNEVMAHSYAHLYDIPTTMFRFFT  182
            L+ AS+SS YGANT  P+S +D+ D  +S+YAATKKSNE+MAH+Y+HLY++PTT +RFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  183  VYGPWGRPDMALFKFTKAILNGDPIDVYNHGDMSRDFTYVTDLVRGIHLLLNAIPERLDD  242
            VYGPWGRPDMALFKFTKAI+N+++IDVYNHG+M RDFTYV D+V +I  L++  +    +
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  243  VPAPQVFDGDSLSPVAPHRIVNIGNGEPVQLMAFIEAIEGALGQPAAKNFMDMQPGDVPA  302
             +++   D D+ S+ AP ++ NIGN  PV+LM F+EAIE  LG+ A KN+MD+QPGDVP 
Sbjct  241  WSGA---DPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPE  297

Query  303  TWADGALLQKLTGYTPKTDVTTGVKAFVDWYRDYY  337
            T A+   L +  ++ P T +  GV+ FVDWY +YY
Sbjct  298  TYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

489) Dfer_4589 in NC_013037


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  286 bits (1071),  Expect = 1e-78, Method: Compositional matrix adjust.
 Identities = 178/350 (51%), Positives = 248/350 (71%), Gaps = 33/350 (9%)

Query  1    MKILVTGAAGFIGFYLVKKLIGEGHEVFGIDNINDYYATSLKIDRLKECGIKHIDLAAPW  60
            MKIL+TG+AGFIG  L KKLI +GH V+G+D+INDYY+ SLK DRLK  G          
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK---------  51

Query  61   ENIYNSSIGNYAFQRVDLLNMDRLLELFEEHRFDYVVNLAAQAGIRYSIENPRSYLNSNV  120
                     N++F++V L N D L  +F +++ + VVNLAAQAG+RYSIENPR+Y++SN+
Sbjct  52   --------ENFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNI  103

Query  121  EGFFNILECCRQYPPRKLVFASSSSVYGLNEEQPFSTEQKVDSPINVYAASKKSNELMAH  180
             GF NILEC R++  ++L++ASSSSVYG N  +PFST +++D P+++YAA+KKSNELMAH
Sbjct  104  VGFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAH  163

Query  181  AYSHLYKFTTVGLRFFTVYGPWGRPDMAPFLFADAILNDRPIKVFNNGQMKRDFTYVDDI  240
            +YSHLY++ T GLRFFTVYGPWGRPDMA F F+ AI+ND++I V+N+G+M RDFTYVDDI
Sbjct  164  TYSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDI  223

Query  241  VDGIASVI--------------SADLSEY--YQVFNIGNGKPVDLLYFIQCLEKSLGKEA  284
            V++I+ ++              +   S Y  Y+V+NIGN  PV L+ F++ +E+ LGKEA
Sbjct  224  VEAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEA  283

Query  285  VKEMHPMVPGDIVSTWADTTQLEASTGYKSQTDIAHGVELFASWYKKYFK  334
             K+   + PGD+  T A+  +L    ++K++T I +GV+ F  WY  Y+K
Sbjct  284  RKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

490) Xaut_3569 in NC_009720


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  286 bits (1071),  Expect = 9e-79, Method: Compositional matrix adjust.
 Identities = 174/335 (52%), Positives = 249/335 (75%), Gaps = 4/335 (1%)

Query  1    MRYLITGTAGFIGFHLAKRLLDEGHFVVGYDGMTKYYDVALKEKRHAILARSN-GFKAVI  59
            M+ LITGTAGFIG HLAK+L+ +GH+V+G D++  YY V+LKE R   +++ N  F+ V 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKV-  59

Query  60   aaledkdalekaaelaePDVIVHLAAQAGVRYSLENPRSYIDSNLVGSFNVIDLASRFKP  119
              LE+ D L K     +P+V+V+LAAQAGVRYS+ENPR+YIDSN+VG  N+++ + +F+ 
Sbjct  60   -KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNI  118

Query  120  KHLLLASTSSVYGSNEKVPFAESDKADEPMTIYAATKKSMEVMAHSYSHLHKIPTTAFRF  179
            ++L+ AS+SSVYG+N   PF+ SD+ D+P+++YAATKKS E+MAH+YSHL ++PTT++RF
Sbjct  119  QNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRF  178

Query  180  FTVYGPWGRPDMALFKFVDAIRNDRPIEIYGEGKMSRDFTYIDDLIEGIVRLIGVPPDEA  239
            FTVYGPWGRPDMALFKF  AI ND++I++Y +G+M RDFTY+DD++E+I RL+   P  +
Sbjct  179  FTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVK-KPASP  237

Query  240  NRVTAEGVIDTLSHHAPFRIVNIGGGQPVALMRFVETIEESMGKPAVRKMLPMQQGDVPR  299
            N+  + +  D  S  AP+++ NIG   PV LM FVE+IE+ +GK A ++ + +Q GDVP 
Sbjct  238  NKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPE  297

Query  300  TFAAPDLLVALTGFKPQIEIEVGVRRFAEWYQEHY  334
            T+A  D L    +FKP+  I+ GV +F +WY E Y
Sbjct  298  TYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

491) BCO26_0348 in NC_015634


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  285 bits (1068),  Expect = 2e-78, Method: Compositional matrix adjust.
 Identities = 179/341 (53%), Positives = 245/341 (72%), Gaps = 23/341 (6%)

Query  13   LVTGAAGFIGFYLCERLLKQNCKVIGIDNINDYYDVNLKYFRLEKLKLYEKFTFIKTDIS  72
            L+TG+AGFIG  L  +L+KQ   VIG+D+INDYY V+LK  RL  +   E+FTF K  + 
Sbjct  4    LITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKVKLE  62

Query  73   NKKMIQEIFNEYKPEIVVNLAAQAGVRYSIENPDVYIQSNIIGFYNILESCRKYSVDHLV  132
            N   +  +F + +PE+VVNLAAQAGVRYSIENP  YI+SNI+GF NILE  R +++++L+
Sbjct  63   NYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNLI  122

Query  133  YASSSSVYGSNKKVPFEEKDFVDHPVSLYAATKKSNELMAHTYSHLYKIPATGLRFFTVY  192
            YASSSSVYG+N   PF   D +DHP+SLYAATKKSNELMAHTYSHLY++P+TGLRFFTVY
Sbjct  123  YASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTVY  182

Query  193  GPMGRPDMAYFGFVNKYFLGEPIRIFNNADFEHDLTRDFTYIDDIVEGMERVISNPPVIG  252
            GP GRPDMA F F +    +++I ++N++    ++ RDFTY+DDIVE++ R++ +P+   
Sbjct  183  GPWGRPDMALFKFTKAIVNDQAIDVYNHG----NMMRDFTYVDDIVEAISRLVKKPASPN  238

Query  253  DA------------APHRVFNIGNNKPVKLMAFVEALEKSLSKTLGREVKFKKIFEPIKP  300
                          AP +V+NIGNN PV+LM FVEA+E+ L+K        +K +  ++P
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEA------RKNYMDLQP  292

Query  301  GDVPTTYASTELLESAVGFKPKTSIEEGLQKFSDWYVKYYK  341
            GDVP TYA+ + L   ++FKP T+I++G++KF DWY+ YYK
Sbjct  293  GDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

492) BT_0600 in NC_004663


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  285 bits (1067),  Expect = 2e-78, Method: Compositional matrix adjust.
 Identities = 173/345 (51%), Positives = 255/345 (74%), Gaps = 20/345 (5%)

Query  13   VLVTGAAGFIGANLVKRLLNEFDSVKVIGIDSITEYYDVRLKYERLQELSAYGDRFVFIK  72
            +L+TG+AGFIG++L K+L+++  +  VIG+DSI +YY V LK +RL+ ++   + F F K
Sbjct  3    ILITGTAGFIGSHLAKKLIKQ--GHYVIGVDSINDYYSVSLKEDRLKSIGK--ENFTFNK  58

Query  73   DSIAKKEIVESIFTNYHPQVVVNLAAQAGVRYSITNPDAYIESNLIGFYNILESCRHHSV  132
              + + + +  +F + +P+VVVNLAAQAGVRYSI NP +YI+SN++GF NILE  RH ++
Sbjct  59   VKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNI  118

Query  133  EHLVYASSSSVYGSNKKVPYSTDDKVDNPVSLYAATKKSNELMAHAYSKLYNIPSTGLRF  192
            ++L+YASSSSVYG+N   P+ST D++D+P+SLYAATKKSNELMAH+YS LYN+P+TGLRF
Sbjct  119  QNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRF  178

Query  193  FTVYGPCGRPDMAYFGFTNKLREGKTIQIFNYGNCKRDFTYVDDIVEGIVCIMQH--APE  250
            FTVYGP GRPDMA F FT+ + ++++I+++N GN  RDFTYVDDIVE+I  +++   +P+
Sbjct  179  FTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPN  238

Query  251  KK----NGEDGLPIPPYKVYNIGNNSPENLLDFVTILQEELIAAKVLPDDYDFETHKELV  306
            K     + + G + +PYKVYNIGNNSP  L++FV  +++ L            E++K+ +
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGK----------EARKNYM  288

Query  307  PMQPGDVSVTYADTTSLEQDFGFKPSISLRKGLRAFAQWYSKYYK  351
             +QPGDV+ TYA+   L +D++FKP  +++ G+  F +WY  YYK
Sbjct  289  DLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

493) lspL in NC_017082


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  285 bits (1067),  Expect = 2e-78, Method: Compositional matrix adjust.
 Identities = 168/332 (51%), Positives = 243/332 (74%), Gaps = 10/332 (3%)

Query  6    ILVTGAAGFIGFHVARQLLAEGRTVVGLDNLNSYYDPALKrdrlellrddSRFSFVKADL  65
            IL+TG+AGFIG H+A++L+ +G+ V+G+D++N YY  +LK DRL  +     F+F K  L
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKVKL  61

Query  66   ADREAIAALFARHGFTEVVHLAAQAGVRYSIEQPQAYADSNLQGFLNVLEGCRHNGCRHL  125
             + + ++ +F  +    VV+LAAQAGVRYSIE+P++Y DSN+ GF+N+LE  RH   ++L
Sbjct  62   ENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNL  121

Query  126  VYASSSSVYGANTKLPFAVQDRTDHPVSFYAATKKANEVMAQSYSHLYRLPVTALRFFTI  185
            +YASSSSVYGANT  PF+  D  DHP+S+YAATKK+NE+MA++YSHLY LP T+LRFFT+
Sbjct  122  IYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTV  181

Query  186  YGPWGRPDMALFLFANAIMAGKPIRLFNHGRMRRDFTYIDDVTCVVSKLIDRVpaddpaa  245
            YGPWGRPDMALF F++AI+ +++I ++NHG M RDFTY+DD+   +S+L+ + ++ +   
Sbjct  182  YGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEW  241

Query  246  anapS---------KVYNVGNHHPEELMHVVGLLEQELGRTAIKELLPMQPGDVLETFAD  296
            + A +         KVYN+GN+ P  LM+ V  +E+ LG+ A K+ + +QPGDV ET+A+
Sbjct  242  SGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYAN  301

Query  297  VEDLMRDTGFAPSTPIALGVRNFVTWYRDYFK  328
            V+DL RD +F P T I  GV +FV WY +Y+K
Sbjct  302  VDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

494) Rpal_4503 in NC_011004


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  285 bits (1066),  Expect = 2e-78, Method: Compositional matrix adjust.
 Identities = 169/332 (51%), Positives = 244/332 (74%), Gaps = 9/332 (2%)

Query  6    VLVTGAAGFIGYHVARELLEAGNVVVGLDSLNDYYDPALKQARLDLLTPYPGFSFVRADL  65
            +L+TG+AGFIG H+A+ L+  G+ V+G+DS+NDYY  +LK+ RL  +     F+F +  L
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKVKL  61

Query  66   SDRAAIADLFAKHRFPVVIHLAAQAGVRHSLSHPHDYADSNLEGFLNVLEGCRHNGCSHL  125
             +   ++ +F  ++  VV++LAAQAGVR S+ +P+ Y DSN+ GF+N+LE  RH    +L
Sbjct  62   ENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNL  121

Query  126  IYASSSSVYGANTKLPFSVADPTDHPISLYAATKKANELMAHCYSHLYRLPTTGLRFFTI  185
            IYASSSSVYGANT  PFS +D  DHP+SLYAATKK+NELMAH YSHLY LPTTGLRFFT+
Sbjct  122  IYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTV  181

Query  186  YGPWYRPDMALYLFARAITEGRPIKLFNHGKMrrdftfvddvtrvvtKLMTLVPTAEPGQ  245
            YGPW RPDMAL+ F++AI ++++I ++NHG+M RDFT+VDD+   +++L+   ++++   
Sbjct  182  YGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEW  241

Query  246  NGGAPA--------RVYNVGNHSPEELMHVVALLERALGRPAIKEMLPMQPGDVPETFAD  297
            +G+ P         +VYN+GN+SP  LM+ V  +E  LG+ A K+ + +QPGDVPET+A+
Sbjct  242  SGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYAN  301

Query  298  VEALFRDVGFRPSTPIEDGVRAFVRWFRDYHR  329
            V+ LFRD++F+P T I+DGV  FV W+ +Y +
Sbjct  302  VDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

495) PGA1_65p00440 in NC_018288


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  285 bits (1066),  Expect = 2e-78, Method: Compositional matrix adjust.
 Identities = 165/330 (50%), Positives = 233/330 (71%), Gaps = 4/330 (1%)

Query  5    LITGSAGFIGYHLADRLLAAGWRVIGLDCLSPYYDVRLKECRHARLAEYAGFTPIIGKLE  64
            LITG+AGFIG HLA +L+  G  VIG+D ++ YY V LKE R   ++    FT    KLE
Sbjct  4    LITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKVKLE  62

Query  65   DPDRLMGLFATHKPDAVIHLAAQAGVRHSIDAPRDYLEANLIGTFELLEAARAHPPAHML  124
            + D L  +F  ++P+ V++LAAQAGVR SI+ PR Y+++N++G  ++LE +R     +++
Sbjct  63   NYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNLI  122

Query  125  IASTSSAYGANTQMPFDERQQADHQMSFYAATKKAGETMAHSYAHLYGLPTTMFRFFTVY  184
             AS+SS YGANT  PF   ++ DH +S+YAATKK+ E MAH+Y+HLY LPTT +RFFTVY
Sbjct  123  YASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTVY  182

Query  185  GPWGRPDMALFKFTQAMQAGQPIDVYNHGRMSRDFTYIDDLVAGITGLID--AVPGDQ-P  241
            GPWGRPDMALFKFT+A+  +Q+IDVYNHG M RDFTY+DD+V +I+ L+   A P  + +
Sbjct  183  GPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEWS  242

Query  242  VSEQDNLSPVAPFRVVNIGASRPTPLMEYIAALETALGITAQKNLMEMQPGDVPATWADT  301
             ++ D  S+ AP++V NIG + P  LME++ A+E  LG  A+KN M++QPGDVP T A+ 
Sbjct  243  GADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYANV  302

Query  302  SLLNQLTGYEPQVPVEEGVARFVTWYRAYY  331
              L +  ++ P+  +++GV +FV WY  YY
Sbjct  303  DDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

496) lpsL in NC_007761


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  285 bits (1066),  Expect = 2e-78, Method: Compositional matrix adjust.
 Identities = 164/331 (50%), Positives = 250/331 (76%), Gaps = 1/331 (0%)

Query  1    MRYFITGTAGFIGFHLARRLLQEGHEVTGFDGLTPYYNVKLKEMRHAALSQFPAFRPVIS  60
            M+ +ITGTAGFIG HLA++L+++GH V G D++  YY+V LKE R  ++++   F     
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   MLEDRPaleaavsaaaPDILIHLAAQAGVRYSLENPEAYIHSNVEGSWNIMEIARRVEVR  120
             LE+   L        P+++++LAAQAGVRYS+ENP +YI+SN+ G  NI+E +R+ +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLMLASTSSIYGANATVPFRETDRADEPLTIYAATKKSMELMAHSYAHLHKIPTTAFRFF  180
            +L+ AS+SS+YGAN++ PF  +D  D+PL++YAATKKS ELMAH+Y+HL ++PTT++RFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFAKNMLEGQPIEIYGEGNMSRDFTYIDDLIEAIVRLSAIAPSEEN  240
            TVYGPWGRPDMALFKF+K ++++Q+I++Y +GNM RDFTY+DD++EAI RL   ++S ++
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  RLGDAGIETLSRQAPFRVVNIGGGQPVSLMDFVETVEKALGRRAIRKMLAMQKGDVPRTF  300
              ++A+ +  S  AP++V NIG   PV LM+FVE++E+ LG+ A ++ + +Q GDVP T+
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  AAPDLLVALTGYKPDTTLDVGVEAFVDWYID  331
            A  D L    ++KP+TT++ GV+ FVDWY++
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLE  330

497) C770_GR4Chr1091 in NC_019845


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  284 bits (1064),  Expect = 3e-78, Method: Compositional matrix adjust.
 Identities = 169/337 (51%), Positives = 248/337 (74%), Gaps = 4/337 (1%)

Query  1    MRYLITGTAGFIGFHVAKRLIDEGHFVVGFDGMTPYYDVTLKERRHAILQRSNGFKAVTA  60
            M+ LITGTAGFIG H+AK+LI +GH+V+G D++  YY V+LKE R   + + N F     
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKEN-FTFNKV  59

Query  61   MledraaldraaelaePEVIIHLAAQAGVRYSLENPKAYVDANLVGSWNMLELAKAIAPK  120
             LE+   L +     +PEV+++LAAQAGVRYS+ENP++Y+D+N+VG  N+LE ++ +  +
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLMLASTSSIYGANEKIPFAEADRADEPMTLYAATKKSMELMAHSYAHLYKVPTTAFRFF  180
            +L+ AS+SS+YGAN   PF+ +D  D+P++LYAATKKS ELMAH+Y+HLY++PTT++RFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFVDAIHNGRPIDIYGEGRMSRDFTYIDDLVESIVRLSHVPPS-EE  239
            TVYGPWGRPDMALFKF  AI N+++ID+Y +G M RDFTY+DD+VE+I RL   P+S + 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  240  NRVAPEKATDTLSRHAPFRVVNTGGGQPVELMTFVETVEKAVGRPAIHNMLPMQQGDVPR  299
            ++ +++   D  S  AP++V N G   PV LM FVE++E+ +G+ A  N + +Q GDVP 
Sbjct  240  EWSGAD--PDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPE  297

Query  300  TFASPDLLEALTGFKPSVSVEEGVARFVEWYDQNYRR  336
            T+A+ D L    +FKP  ++++GV +FV+WY + Y++
Sbjct  298  TYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

498) lspL in NC_018700


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  284 bits (1064),  Expect = 3e-78, Method: Compositional matrix adjust.
 Identities = 169/337 (51%), Positives = 248/337 (74%), Gaps = 4/337 (1%)

Query  1    MRYLITGTAGFIGFHVAKRLIDEGHFVVGFDGMTPYYDVTLKERRHAILQRSNGFKAVTA  60
            M+ LITGTAGFIG H+AK+LI +GH+V+G D++  YY V+LKE R   + + N F     
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKEN-FTFNKV  59

Query  61   MledraaldraaelaePEVIIHLAAQAGVRYSLENPKAYVDANLVGSWNMLELAKAIAPK  120
             LE+   L +     +PEV+++LAAQAGVRYS+ENP++Y+D+N+VG  N+LE ++ +  +
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLMLASTSSIYGANEKIPFAEADRADEPMTLYAATKKSMELMAHSYAHLYKVPTTAFRFF  180
            +L+ AS+SS+YGAN   PF+ +D  D+P++LYAATKKS ELMAH+Y+HLY++PTT++RFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFVDAIHNGRPIDIYGEGRMSRDFTYIDDLVESIVRLSHVPPS-EE  239
            TVYGPWGRPDMALFKF  AI N+++ID+Y +G M RDFTY+DD+VE+I RL   P+S + 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  240  NRVAPEKATDTLSRHAPFRVVNTGGGQPVELMTFVETVEKAVGRPAIHNMLPMQQGDVPR  299
            ++ +++   D  S  AP++V N G   PV LM FVE++E+ +G+ A  N + +Q GDVP 
Sbjct  240  EWSGAD--PDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPE  297

Query  300  TFASPDLLEALTGFKPSVSVEEGVARFVEWYDQNYRR  336
            T+A+ D L    +FKP  ++++GV +FV+WY + Y++
Sbjct  298  TYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

499) P9515_13711 in NC_008817


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  284 bits (1064),  Expect = 3e-78, Method: Compositional matrix adjust.
 Identities = 166/342 (49%), Positives = 251/342 (74%), Gaps = 13/342 (3%)

Query  4    KILVTGCAGFIGFHVCKQLIKKGLFVIGLDNLNNYYDISLKRARLKEIENFSKNNIKGEF  63
            KIL+TG AGFIG H+ K+LIK+G +VIG+D++N+YY +SLK  RLK I        K +F
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG-------KENF  54

Query  64   LFIKADLKDEKILKNISKVHLPKKVIHLAAQAGVRHSIENPRAYINSNLVGFGNVLEFCK  123
             F K  L +   L ++   + P  V++LAAQAGVR SIENPR+YI+SN+VGF N+LE  +
Sbjct  55   TFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSR  114

Query  124  DNQVDHLIYASSSSIYGGNKKIPFSEKDFVDYPVSLYAATKKSNELMAHSYSHLFKLPST  183
            + ++++LIYASSSS+YG+N   PFS  D +D P+SLYAATKKSNELMAH+YSHL++LP+T
Sbjct  115  HFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTT  174

Query  184  GIRLFTVYGPWGRPDMAPMIFTKSILSSKPIKIFNNGEMFRDFTYIDDVSEAILKLLHLP  243
            G+R+FTVYGPWGRPDMA   FTK+I++ ++I ++N+G+M RDFTY+DD+ EAI +L+  P
Sbjct  175  GLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKP  234

Query  244  PKYLNDDKNLNSSELPELTPHRIINIGSSNPINLLEFIDILESEINIKAIRVFEKMQLGD  303
            +   ++    ++   +  +P ++ NIG+++P+ L+EF++ +E+ +   A + +  +Q GD
Sbjct  235  ASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGD  294

Query  304  VKKTYADTSYIEDL---INYKPNTSLKNGIREFVKWYKNFYK  342
            V  TYA+   ++DL   I++KP+T++++G+  FV WY ++YK
Sbjct  295  VPETYAN---VDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

500) mll6759 in NC_002678


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  284 bits (1063),  Expect = 4e-78, Method: Compositional matrix adjust.
 Identities = 166/330 (51%), Positives = 243/330 (74%), Gaps = 1/330 (0%)

Query  10   IVVTGTAGFIGFHVASRLLRRGLAVIGVDNFTPYYDVGLKEARFAQLCAEPGFTPMQMDL  69
            I++TGTAGFIG H+A +L+++G  VIGVD++  YY V+LKE R+  +  E  FT  ++ L
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKVKL  61

Query  70   ADQALVKALFSDFQPSHFVHLAAQAGVRYSLADPHAYVQSNIVAFLNVLEGCRHAGVSHL  129
             +   +  +F D QP   V+LAAQAGVRYS+ +P++Y++SNIV+F+N+LE  RH  + +L
Sbjct  62   ENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNL  121

Query  130  VYASSSSVYGANRSIPFSEHHGASHPVSFYAATKSANECMAHSYSHLFGLPVTGLRFFTV  189
            +YASSSSVYGAN S PFS  +   HP+S+YAATK +NE MAH+YSHL+ LP TGLRFFTV
Sbjct  122  IYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTV  181

Query  190  YGPWGRPDMAVYTFTHAIAEGRTIEIANAGRVWRDFTYIDDIVEGVVRVLAAPPRPDPDW  249
            YGPWGRPDMA++ FT AI ++++I++ N G + RDFTY+DDIVE++ R++  P+ P+ +W
Sbjct  182  YGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEW  241

Query  250  DSRaaapatssapYRIYNIGNDRPEEINRLIAIIETALGRRAVRVNVPLPPGDVLKTRAD  309
             +  + P++S APY++YNIGN+ P  +  ++  IE  LG+ A +  + L PGDV  T A+
Sbjct  242  SGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYAN  301

Query  310  VSDLRGAVGFAPATALEDGVQRFVEWYRDF  339
            V DL   ++F P T+++DGV++FV+WY ++
Sbjct  302  VDDLFRDIDFKPETTIQDGVNKFVDWYLEY  331

501) lpsL in NC_003047


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  284 bits (1063),  Expect = 4e-78, Method: Compositional matrix adjust.
 Identities = 169/337 (51%), Positives = 248/337 (74%), Gaps = 4/337 (1%)

Query  1    MRYLITGTAGFIGFHVAKRLIDEGHFVVGFDGMTPYYDVTLKERRHAILQRSNGFKAVTA  60
            M+ LITGTAGFIG H+AK+LI +GH+V+G D++  YY V+LKE R   + + N F     
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKEN-FTFNKV  59

Query  61   MledraaldraaelaePEVIIHLAAQAGVRYSLENPKAYVDANLVGSWNMLELAKAIAPK  120
             LE+   L +     +PEV+++LAAQAGVRYS+ENP++Y+D+N+VG  N+LE ++ +  +
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLMLASTSSIYGANEKIPFAEADRADEPMTLYAATKKSMELMAHSYAHLYKVPTTSFRFF  180
            +L+ AS+SS+YGAN   PF+ +D  D+P++LYAATKKS ELMAH+Y+HLY++PTT++RFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFVDAIHNGRPIDIYGEGRMSRDFTYIDDLVESIVRLSHVPPS-EE  239
            TVYGPWGRPDMALFKF  AI N+++ID+Y +G M RDFTY+DD+VE+I RL   P+S + 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  240  NRVAPEKATDTLSRHAPFRVVNTGGGQPVELMTFVETVEKAVGRPAIHNMLPMQQGDVPR  299
            ++ +++   D  S  AP++V N G   PV LM FVE++E+ +G+ A  N + +Q GDVP 
Sbjct  240  EWSGAD--PDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPE  297

Query  300  TFASPDLLEALTGFKPSVSVEEGVARFVEWYDQNYRR  336
            T+A+ D L    +FKP  ++++GV +FV+WY + Y++
Sbjct  298  TYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

502) lpsL in NC_020528


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  284 bits (1063),  Expect = 4e-78, Method: Compositional matrix adjust.
 Identities = 169/337 (51%), Positives = 248/337 (74%), Gaps = 4/337 (1%)

Query  1    MRYLITGTAGFIGFHVAKRLIDEGHFVVGFDGMTPYYDVTLKERRHAILQRSNGFKAVTA  60
            M+ LITGTAGFIG H+AK+LI +GH+V+G D++  YY V+LKE R   + + N F     
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKEN-FTFNKV  59

Query  61   MledraaldraaelaePEVIIHLAAQAGVRYSLENPKAYVDANLVGSWNMLELAKAIAPK  120
             LE+   L +     +PEV+++LAAQAGVRYS+ENP++Y+D+N+VG  N+LE ++ +  +
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLMLASTSSIYGANEKIPFAEADRADEPMTLYAATKKSMELMAHSYAHLYKVPTTSFRFF  180
            +L+ AS+SS+YGAN   PF+ +D  D+P++LYAATKKS ELMAH+Y+HLY++PTT++RFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFVDAIHNGRPIDIYGEGRMSRDFTYIDDLVESIVRLSHVPPS-EE  239
            TVYGPWGRPDMALFKF  AI N+++ID+Y +G M RDFTY+DD+VE+I RL   P+S + 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  240  NRVAPEKATDTLSRHAPFRVVNTGGGQPVELMTFVETVEKAVGRPAIHNMLPMQQGDVPR  299
            ++ +++   D  S  AP++V N G   PV LM FVE++E+ +G+ A  N + +Q GDVP 
Sbjct  240  EWSGAD--PDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPE  297

Query  300  TFASPDLLEALTGFKPSVSVEEGVARFVEWYDQNYRR  336
            T+A+ D L    +FKP  ++++GV +FV+WY + Y++
Sbjct  298  TYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

503) Sinme_0877 in NC_015590


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  284 bits (1063),  Expect = 4e-78, Method: Compositional matrix adjust.
 Identities = 169/337 (51%), Positives = 248/337 (74%), Gaps = 4/337 (1%)

Query  1    MRYLITGTAGFIGFHVAKRLIDEGHFVVGFDGMTPYYDVTLKERRHAILQRSNGFKAVTA  60
            M+ LITGTAGFIG H+AK+LI +GH+V+G D++  YY V+LKE R   + + N F     
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKEN-FTFNKV  59

Query  61   MledraaldraaelaePEVIIHLAAQAGVRYSLENPKAYVDANLVGSWNMLELAKAIAPK  120
             LE+   L +     +PEV+++LAAQAGVRYS+ENP++Y+D+N+VG  N+LE ++ +  +
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLMLASTSSIYGANEKIPFAEADRADEPMTLYAATKKSMELMAHSYAHLYKVPTTSFRFF  180
            +L+ AS+SS+YGAN   PF+ +D  D+P++LYAATKKS ELMAH+Y+HLY++PTT++RFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFVDAIHNGRPIDIYGEGRMSRDFTYIDDLVESIVRLSHVPPS-EE  239
            TVYGPWGRPDMALFKF  AI N+++ID+Y +G M RDFTY+DD+VE+I RL   P+S + 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  240  NRVAPEKATDTLSRHAPFRVVNTGGGQPVELMTFVETVEKAVGRPAIHNMLPMQQGDVPR  299
            ++ +++   D  S  AP++V N G   PV LM FVE++E+ +G+ A  N + +Q GDVP 
Sbjct  240  EWSGAD--PDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPE  297

Query  300  TFASPDLLEALTGFKPSVSVEEGVARFVEWYDQNYRR  336
            T+A+ D L    +FKP  ++++GV +FV+WY + Y++
Sbjct  298  TYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

504) SinmeB_0705 in NC_017322


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  284 bits (1063),  Expect = 4e-78, Method: Compositional matrix adjust.
 Identities = 169/337 (51%), Positives = 248/337 (74%), Gaps = 4/337 (1%)

Query  1    MRYLITGTAGFIGFHVAKRLIDEGHFVVGFDGMTPYYDVTLKERRHAILQRSNGFKAVTA  60
            M+ LITGTAGFIG H+AK+LI +GH+V+G D++  YY V+LKE R   + + N F     
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKEN-FTFNKV  59

Query  61   MledraaldraaelaePEVIIHLAAQAGVRYSLENPKAYVDANLVGSWNMLELAKAIAPK  120
             LE+   L +     +PEV+++LAAQAGVRYS+ENP++Y+D+N+VG  N+LE ++ +  +
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLMLASTSSIYGANEKIPFAEADRADEPMTLYAATKKSMELMAHSYAHLYKVPTTSFRFF  180
            +L+ AS+SS+YGAN   PF+ +D  D+P++LYAATKKS ELMAH+Y+HLY++PTT++RFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFVDAIHNGRPIDIYGEGRMSRDFTYIDDLVESIVRLSHVPPS-EE  239
            TVYGPWGRPDMALFKF  AI N+++ID+Y +G M RDFTY+DD+VE+I RL   P+S + 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  240  NRVAPEKATDTLSRHAPFRVVNTGGGQPVELMTFVETVEKAVGRPAIHNMLPMQQGDVPR  299
            ++ +++   D  S  AP++V N G   PV LM FVE++E+ +G+ A  N + +Q GDVP 
Sbjct  240  EWSGAD--PDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPE  297

Query  300  TFASPDLLEALTGFKPSVSVEEGVARFVEWYDQNYRR  336
            T+A+ D L    +FKP  ++++GV +FV+WY + Y++
Sbjct  298  TYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

505) lpsL in NC_017325


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  284 bits (1063),  Expect = 4e-78, Method: Compositional matrix adjust.
 Identities = 169/337 (51%), Positives = 248/337 (74%), Gaps = 4/337 (1%)

Query  1    MRYLITGTAGFIGFHVAKRLIDEGHFVVGFDGMTPYYDVTLKERRHAILQRSNGFKAVTA  60
            M+ LITGTAGFIG H+AK+LI +GH+V+G D++  YY V+LKE R   + + N F     
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKEN-FTFNKV  59

Query  61   MledraaldraaelaePEVIIHLAAQAGVRYSLENPKAYVDANLVGSWNMLELAKAIAPK  120
             LE+   L +     +PEV+++LAAQAGVRYS+ENP++Y+D+N+VG  N+LE ++ +  +
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLMLASTSSIYGANEKIPFAEADRADEPMTLYAATKKSMELMAHSYAHLYKVPTTSFRFF  180
            +L+ AS+SS+YGAN   PF+ +D  D+P++LYAATKKS ELMAH+Y+HLY++PTT++RFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFVDAIHNGRPIDIYGEGRMSRDFTYIDDLVESIVRLSHVPPS-EE  239
            TVYGPWGRPDMALFKF  AI N+++ID+Y +G M RDFTY+DD+VE+I RL   P+S + 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  240  NRVAPEKATDTLSRHAPFRVVNTGGGQPVELMTFVETVEKAVGRPAIHNMLPMQQGDVPR  299
            ++ +++   D  S  AP++V N G   PV LM FVE++E+ +G+ A  N + +Q GDVP 
Sbjct  240  EWSGAD--PDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPE  297

Query  300  TFASPDLLEALTGFKPSVSVEEGVARFVEWYDQNYRR  336
            T+A+ D L    +FKP  ++++GV +FV+WY + Y++
Sbjct  298  TYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

506) Gdia_0764 in NC_011365


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  284 bits (1063),  Expect = 4e-78, Method: Compositional matrix adjust.
 Identities = 158/335 (48%), Positives = 238/335 (72%), Gaps = 7/335 (2%)

Query  1    MRILMTGTAGFIGFHVACRLLDDGHEVTGIDGITAYYDVALKRERHDRLAMRPGFTRHEF  60
            M+IL+TGTAGFIG H+A +L+ +GH V G+D+I  YY V+LK +R   ++ +  FT +  
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG-KENFTFNKV  59

Query  61   MLEDAVRLAETCREARPDIVIHLAAQAGVRYSLENPGAYISANIVGTHNLLEAIKTLGVR  120
             LE+   L+    + +P++V++LAAQAGVRYS+ENP +YI +NIVG  N+LE  + + ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HFVLASTSSVYGASAESPFTEDQACNHPLSLYGATKKACEEIGHSHAHLYGLPITACRFF  180
            +++ AS+SSVYGA++  PF+  +  +HPLSLY+ATKK+ E ++H+ +HLY LP T+ RFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFRFTSNILGGRPIDVYNNAQMERDFTYIDDVVEALCRLLPHAPAVTT  240
            TVYGPWGRPDMALF+FT  I+ +++IDVYN+++M RDFTY+DD+VEA+ RL+   PA   
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLV-KKPASPN  238

Query  241  PTRRGVSPV-----APFRVVNVGHGQPVALGDFIGAIERATGRTAIRHNLPMQPGDVPRT  295
              + G  P      AP++V N+G+  PV L +F+ AIE   G+ A ++ + +QPGDVP T
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPET  298

Query  296  WADCTILEHLTGYRPATALQDGIDAFVAWYRDWYD  330
             A+   L +  +++P T++QDG++ FV WY + Y 
Sbjct  299  YANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

507) GDI_2522 in NC_010125


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  284 bits (1063),  Expect = 4e-78, Method: Compositional matrix adjust.
 Identities = 158/335 (48%), Positives = 238/335 (72%), Gaps = 7/335 (2%)

Query  1    MRILMTGTAGFIGFHVACRLLDDGHEVTGIDGITAYYDVALKRERHDRLAMRPGFTRHEF  60
            M+IL+TGTAGFIG H+A +L+ +GH V G+D+I  YY V+LK +R   ++ +  FT +  
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG-KENFTFNKV  59

Query  61   MLEDAVRLAETCREARPDIVIHLAAQAGVRYSLENPGAYISANIVGTHNLLEAIKTLGVR  120
             LE+   L+    + +P++V++LAAQAGVRYS+ENP +YI +NIVG  N+LE  + + ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HFVLASTSSVYGASAESPFTEDQACNHPLSLYGATKKACEEIGHSHAHLYGLPITACRFF  180
            +++ AS+SSVYGA++  PF+  +  +HPLSLY+ATKK+ E ++H+ +HLY LP T+ RFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFRFTSNILGGRPIDVYNNAQMERDFTYIDDVVEALCRLLPHAPAVTT  240
            TVYGPWGRPDMALF+FT  I+ +++IDVYN+++M RDFTY+DD+VEA+ RL+   PA   
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLV-KKPASPN  238

Query  241  PTRRGVSPV-----APFRVVNVGHGQPVALGDFIGAIERATGRTAIRHNLPMQPGDVPRT  295
              + G  P      AP++V N+G+  PV L +F+ AIE   G+ A ++ + +QPGDVP T
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPET  298

Query  296  WADCTILEHLTGYRPATALQDGIDAFVAWYRDWYD  330
             A+   L +  +++P T++QDG++ FV WY + Y 
Sbjct  299  YANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

508) Weevi_0960 in NC_015144


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  284 bits (1062),  Expect = 5e-78, Method: Compositional matrix adjust.
 Identities = 174/349 (50%), Positives = 254/349 (73%), Gaps = 29/349 (8%)

Query  3    KVLVTGAAGFIGYFTVKKLMEVGYEVVGLDNINDYYDINLKYARLKDVGFRREDAEVWTK  62
            K+L+TG+AGFIG    KKL+  G  V+G+D+INDYY ++LK  RLK +G          K
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG----------K  51

Query  63   ETQSTTYKNLSFIRLNLEDRENLPTLFEKHQFDAVIHLAAQAGVRYSLENPMAYVDSNLV  122
            E       N++F +++LE+ ++L+ +F  +Q + V++LAAQAGVRYS+ENP +Y+DSN+V
Sbjct  52   E-------NFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIV  104

Query  123  GYVNLLECCRHAKVKHLVYASSSSVYGENPKTPFEEEDRVDYPVSLYAATKKANELLAHT  182
            G++N+LEC RH ++++L+YASSSSVYG N   PF   D +D P+SLYAATKK+NEL+AHT
Sbjct  105  GFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHT  164

Query  183  YSHLYQLPTTGLRFFTVYGPYGRPDMAPMLFATAITENRPIKVFNNGDMSRDFTFIDDIV  242
            YSHLY+LPTTGLRFFTVYGP GRPDMA   F+ AI ++++I V+N+G+M RDFT++DDIV
Sbjct  165  YSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIV  224

Query  243  NGIIISLKNPPAKDQE---------HPY--YQLFNIGNGSPVSLMQFIETLEKELGKVAD  291
            ++I   +K+P++ ++E          +Y  Y+++NIGN SPV LM+F+E++E+ LGK A 
Sbjct  225  EAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEAR  284

Query  292  KNMMPMQAGDVPRTWAETTKL-NQLGYDSTISIAEGVKEFVKWFKAYNK  339
            KN M +Q+GDVP T A+   L  ++++ +  +I +GV+ FV W+  Y K
Sbjct  285  KNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

509) Anae109_4196 in NC_009675


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  283 bits (1059),  Expect = 1e-77, Method: Compositional matrix adjust.
 Identities = 166/331 (51%), Positives = 238/331 (72%), Gaps = 15/331 (4%)

Query  45   IVLTGCAGFIGSHVARRLLRDGHEVSGLDNLNDYYDPSLKRARLALLAPERGFRFTAADV  104
            I++TG AGFIGSH+A++L+++GH V G+D++NDYY  SLK  RL  ++ E  F F    +
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKVKL  61

Query  105  ADREALDAVLDEAEPEYVVHLAAQVGVRNSVRNPRAYAETNLDGFFNVLDGCARR-GVRH  163
             + + L  V+ + +PE VV+LAAQ GVR S+ NPR+Y ++N+ GF N+L+ C+R+  +++
Sbjct  62   ENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILE-CSRHFNIQN  120

Query  164  LVYASSSSVYGSNEKVPFSEEDPVDHPISFYAATKKANEIMAHAYSHLNRLPTTGLRFFT  223
            L+YASSSSVYG+N   PFS  D +DHP+S+YAATKK+NE+MAH+YSHL  LPTTGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  224  VYGPWGRPDMAPILFGRAILRGEPITLFNHGRMLRDFTYvddvvevvTALVPRPPEPEDA  283
            VYGPWGRPDMA + F +AI+ +++I ++NHG M+RDFTYVDD+VE ++ LV +P+ P+  
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  284  ------------APYRVLNVGNDRPVALEEFVAILERHLGRPALRKYAPMQPGDVPATWA  331
                        APY+V N+GN+ PV L EFV  +E  LG+ A ++Y  +QPGDVP T A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  332  DVRRLQATVGFVPRTPIEEGLRRMTEWLVAY  362
            +V  L   ++F P T I++G+ +  +W + Y
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEY  331

510) Smed_0689 in NC_009636


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  283 bits (1061),  Expect = 6e-78, Method: Compositional matrix adjust.
 Identities = 171/336 (51%), Positives = 245/336 (73%), Gaps = 2/336 (0%)

Query  1    MRYLITGTAGFIGFHVAKRLIDEGHFVVGFDGMTPYYDVTLKERRHAILQRSNGFKAVra  60
            M+ LITGTAGFIG H+AK+LI +GH+V+G D++  YY V+LKE R   + + N F   + 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKEN-FTFNKV  59

Query  61   mledraaldraaelaePEVIIHLAAQAGVRYSLENPKAYVDSNLVGSWNMLELAKAIAPK  120
             LE+   L +     +PEV+++LAAQAGVRYS+ENP++Y+DSN+VG  N+LE ++ +  +
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLMLASTSSIYGANEKIPFAEADRADEPMTLYAATKKSMELMAHSYAHLYEVPTTAFRFF  180
            +L+ AS+SS+YGAN   PF+ +D  D+P++LYAATKKS ELMAH+Y+HLY++PTT++RFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFVDAIHNGRPIDIYGEGRMSRDFTYIDDLVESIVRLSHIAPAEEN  240
            TVYGPWGRPDMALFKF  AI N+++ID+Y +G M RDFTY+DD+VE+I RL    PA  N
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVK-KPASPN  238

Query  241  RVAPEKATDTLSRHAPFRVVNTGGGQPVELMTFVETVEKAVGRPAIHNMLPMQQGDVPRT  300
            +  +    D  S  AP++V N G   PV LM FVE++E+ +G+ A  N + +Q GDVP T
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPET  298

Query  301  FASPDLLEALTGFKPSVSVEEGVARFVEWYEQNYRR  336
            +A+ D L    +FKP  ++++GV +FV+WY + Y++
Sbjct  299  YANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

511) PGA2_71p460 in NC_018422


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  283 bits (1061),  Expect = 6e-78, Method: Compositional matrix adjust.
 Identities = 163/330 (50%), Positives = 233/330 (71%), Gaps = 4/330 (1%)

Query  5    LITGSAGFIGYHLADRLLAAGWRVIGLDCLSPYYDVRLKECRHARLAEHPGFMPIIGKLE  64
            LITG+AGFIG HLA +L+  G  VIG+D ++ YY V LKE R   ++ +  F     KLE
Sbjct  4    LITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKVKLE  62

Query  65   DPDRLMGLFATHKPDAVIHLAAQAGVRHSIDAPRDYLEANLIGTFELLEAARAHPPAHML  124
            + D L  +F  ++P+ V++LAAQAGVR SI+ PR Y+++N++G  ++LE +R     +++
Sbjct  63   NYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNLI  122

Query  125  IASTSSAYGANTQMPFDERQQADHQMSFYAATKKAGETMAHSYAHLYGLPTTMFRFFTVY  184
             AS+SS YGANT  PF   ++ DH +S+YAATKK+ E MAH+Y+HLY LPTT +RFFTVY
Sbjct  123  YASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTVY  182

Query  185  GPWGRPDMALFKFTKAMQAGQPIDVYNHGRMSRDFTYIDDLVAGITGLID--AVPGDQ-P  241
            GPWGRPDMALFKFTKA+  +Q+IDVYNHG M RDFTY+DD+V +I+ L+   A P  + +
Sbjct  183  GPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEWS  242

Query  242  VSEQDNLSPVAPFRVVNIGASRPTPLMDYIAALETALGITAQKNLMEMQAGDVPATWADT  301
             ++ D  S+ AP++V NIG + P  LM+++ A+E  LG  A+KN M++Q+GDVP T A+ 
Sbjct  243  GADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYANV  302

Query  302  SLLSQLTGYEPQVPVEEGVARFVTWYRAYY  331
              L +  ++ P+  +++GV +FV WY  YY
Sbjct  303  DDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

512) lpsL in NC_021905


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  283 bits (1060),  Expect = 6e-78, Method: Compositional matrix adjust.
 Identities = 164/331 (50%), Positives = 249/331 (76%), Gaps = 1/331 (0%)

Query  1    MSYFITGTAGFIGFHLARRLLQEGHEVTGFDGLTPYYNVKLKEMRHAALSQFPAFRPVIS  60
            M  +ITGTAGFIG HLA++L+++GH V G D++  YY+V LKE R  ++++   F     
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   MLEDRPaleaavsaaaPDILIHLAAQAGVRYSLENPEAYIHSNVEGSWNIMEIARRVEVR  120
             LE+   L        P+++++LAAQAGVRYS+ENP +YI+SN+ G  NI+E +R+ +++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLMLASTSSIYGANATVPFRETDRADEPLTIYAATKKSMELMAHSYAHLHKIPTTAFRFF  180
            +L+ AS+SS+YGAN++ PF  +D  D+PL++YAATKKS ELMAH+Y+HL ++PTT++RFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFAKNMLEGQPIEIYGEGNMSRDFTYIDDLIEAIVRLSAIAPSEEN  240
            TVYGPWGRPDMALFKF+K ++++Q+I++Y +GNM RDFTY+DD++EAI RL   ++S ++
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  RLGDAGIETLSRQAPFRVVNIGGGQPVSLMDFVETVEKALGRRAIRKMLAMQKGDVPRTF  300
              ++A+ +  S  AP++V NIG   PV LM+FVE++E+ LG+ A ++ + +Q GDVP T+
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  301  AAPDLLVALTGYKPDTTLDVGVKAFVDWYID  331
            A  D L    ++KP+TT++ GV+ FVDWY++
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLE  330

513) Krodi_2784 in NC_015496


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  283 bits (1061),  Expect = 6e-78, Method: Compositional matrix adjust.
 Identities = 169/349 (49%), Positives = 243/349 (70%), Gaps = 33/349 (9%)

Query  1    MKILVTGAAGFIGYHLCKRLLSEGHTVVGLDNINDYYDPQLKFDRLKELGVVREQAEKWN  60
            MKIL+TG+AGFIG HL K+L+ +GH V+G+D+INDYY   LK DRLK +G          
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG----------  50

Query  61   TLSTSNLEDNFLFIRLNLQDREGLPILFKRNSFDQVCNLAAQAGVRYSIDNPEVYVDTNI  120
                    +NF F +++L++ ++L+ +F  +  + V NLAAQAGVRYSI+NP  Y+D+NI
Sbjct  51   -------KENFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNI  103

Query  121  VGFLNILECCRDCKVSKLVYASSSSVYGNSKEVPFTEKQSVDEPISIYAATKKSNELMAH  180
            VGF+NILEC R+ ++ +L+YASSSSVYG +   PF+  +++D+P+S+YAATKKSNELMAH
Sbjct  104  VGFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAH  163

Query  181  TYSHLFNIETIGLRFFTVYGPWGRPDMAMFLFTDAILNKRPIKVFNEGNLSRDFTYISDi  240
            TYSHL+N+ T GLRFFTVYGPWGRPDMA+F FT AI+N ++I V+N+GN+ RDFTY+ DI
Sbjct  164  TYSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDI  223

Query  241  iegvitvitgtSRTKKP----------------IYNIGNSEPVKLLDFITVLESELGITA  284
            +E++  ++   +  +K                 +YNIGN+ PV+L++F+  +E+ LG  A
Sbjct  224  VEAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEA  283

Query  285  IKQMMPMQDGDVHRTWADVSSLQNDFGYAPSVSVAEGIAAFLAWYRSYY  333
             K+ M +Q GDV  T A+V  L  D+++ P  ++ +G+  F+ WY  YY
Sbjct  284  RKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

514) Spith_0050 in NC_017583


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  283 bits (1061),  Expect = 6e-78, Method: Compositional matrix adjust.
 Identities = 169/348 (49%), Positives = 243/348 (70%), Gaps = 18/348 (5%)

Query  1    MRFLVTGSAGFVGFHLVDLLLRKGHEVVGIDNLSPYYDVGLKKARLAEHGIVVGERGEGI  60
            M++L+TG+AGF+G HL   L+++GH V+G+D+++ YY V+LK  RL   G          
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG----------  50

Query  61   SSRIRDGYTFYFGDIRDSGF--LETLLRRHGVERVIHLAAQAGVRYSLTHPEVYLQSNIE  118
                ++ +TF    ++   +  L  ++  +  E V++LAAQAGVRYS+ +P  Y++SNI 
Sbjct  51   ----KENFTF--NKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIV  104

Query  119  GFWVVLEASRRCGVERLVYASTSSVYGLNEKVPFSERDGVDHPVSLYAATKRSNELFAHV  178
            GF  +LE SR+  ++ L+YAS+SSVYG N   PFS  D +DHP+SLYAATK+SNEL AH 
Sbjct  105  GFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHT  164

Query  179  YSHIYGLPTIGLRFFTVYGPWGRPDMAYFSFTERILKGEPIEVFNHGRMERDFTYVEDVV  238
            YSH+Y LPT GLRFFTVYGPWGRPDMA F FT  I+++++I+V+NHG M RDFTYV+D+V
Sbjct  165  YSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIV  224

Query  239  EGVARVAEHPLperrdwdpsdprpdrssAPFWVYNIGHGSPVGLMDFIRAIEEALGREAR  298
            E+++R+   P +  ++W  +DP P+ S AP+ VYNIG+ SPV LM+F+ AIE+ LG+EAR
Sbjct  225  EAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEAR  284

Query  299  IVYREMQPGDVVATHASTESLEEAVGYHPSTPLSEGIRRFVAWYCSYY  346
              Y ++QPGDV  T A+ + L   +++ P T + +G+ +FV WY  YY
Sbjct  285  KNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

515) Rsph17025_4099 in NC_009430


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  283 bits (1060),  Expect = 7e-78, Method: Compositional matrix adjust.
 Identities = 165/332 (50%), Positives = 250/332 (76%), Gaps = 5/332 (1%)

Query  3    RILVTGTAGFIGFHLARLLLAEGFRVHGYDGMTDYYDVALKRRRHAMLLQDPNFSATEGL  62
            +IL+TGTAGFIG HLA+ L+ +G  V G D++ DYY V+LK  R   + ++ NF+     
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKVK  60

Query  63   LEDQALFDRVADEFAPEVIVHLAAQAGVRYSVENPRAYLDANVIGTFSVMEAARRLKVAH  122
            LE+   + +V  +  PEV+V+LAAQAGVRYS+ENPR+Y+D+N++G  +++E +R++++ +
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  123  LMMASTSSVYGANEEMPFRETDKADHQLTIYAATKKANESMGHAWAHVHGVPVTMFRFFT  182
            L+ AS+SSVYGAN   PF  +D+ DH L++YAATKK+NE M+H+ +H+  +P T +RFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  183  VYGPWGRPDLALFKFVDAILDGRPIDIYNHGEMWRDFTYVDDLVRAIRLLIEAVPGGPE-  241
            VYGPWGRPD+ALFKF  AI+++++ID+YNHG+M RDFTYVDD+V AI  L+   P++P+ 
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKK-PASPNK  239

Query  242  --TAVEEDSLSPAAPFRIVNIGNSDKVRLLDFVEAIEESLGRRAIRNYMPMQLGDVPATW  299
              ++ + D+ S+ AP+++ NIGN+  VRL++FVEAIE+ LG+ A +NYM +Q GDVP T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  300  ADAGLLHRLTGYRPQTDVRDGIARFVAWYRDY  331
            A+ + L R  +++P+T ++DG+ +FV WY +Y
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEY  331

516) W7Y_1401 in NC_017866


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  283 bits (1060),  Expect = 8e-78, Method: Compositional matrix adjust.
 Identities = 169/346 (49%), Positives = 252/346 (73%), Gaps = 19/346 (5%)

Query  39   KTILITGAAGFIGWNLAERLLHSYPDITIVGLDNLNDYYDVKLKEARLERLTKYPNLIFE  98
              ILITG+AGFIG +LA +L+    +  ++G+D++NDYY V LKE RL  + K  N+ F+
Sbjct  1    MKILITGTAGFIGSHLAKKLIK--QGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFN  57

Query  99   KGDLSDKKLIGRLFEKHHFDVVVNLGAQAGVRYSITNPDAYVSSNLIGFYNILEACRHNP  158
            K  L +   ++++F  ++ +VVVNL+AQAGVRYSI NP +Y+ SN++GF NILE  RH  
Sbjct  58   KVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFN  117

Query  159  VEHLVYASSSSVYGGNKKVPFSTEDKVDNPVSLYAATKKSNELMAHAYSKLYDIPSTGLR  218
            +++L+YASSSSVYG+N   PFST D++D+P+SLYAATKKSNELMAH+YS LY++P+TGLR
Sbjct  118  IQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLR  177

Query  219  FFTVYGPAGRPDMAYFGFTNKLLAGETIKIFNYGNCQRDFTYIDDIVEGIVRVIQ--GAP  276
            FFTVYGP GRPDMA F FT+ ++ +++I ++N GN  RDFTY+DDIVE+I R+++  ++P
Sbjct  178  FFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASP  237

Query  277  TRQ----TGEDGLPVPPYALYNIGCGHPENLLDFVTTLQEELIRAEVLPDDYDFEAHKEL  332
             ++      + G + +PY +YNIG   P  L++FV ++++ L +          EA+K+ 
Sbjct  238  NKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGK----------EARKNY  287

Query  333  VPMQPGDVPVTYADTEALTRDYGYRPTTSLRDGLRRFAEWYKQYYM  378
            + +QPGDVP TYA+ + L RD +++P T+++DG+ +F +WY +YY 
Sbjct  288  MDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

517) BIF_01577 in NC_017214


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  283 bits (1060),  Expect = 8e-78, Method: Compositional matrix adjust.
 Identities = 169/346 (49%), Positives = 252/346 (73%), Gaps = 19/346 (5%)

Query  39   KTILITGAAGFIGWNLAERLLHSYPDITIVGLDNLNDYYDVKLKEARLERLTKYPNLIFE  98
              ILITG+AGFIG +LA +L+    +  ++G+D++NDYY V LKE RL  + K  N+ F+
Sbjct  1    MKILITGTAGFIGSHLAKKLIK--QGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFN  57

Query  99   KGDLSDKKLIGRLFEKHHFDVVVNLGAQAGVRYSITNPDAYVSSNLIGFYNILEACRHNP  158
            K  L +   ++++F  ++ +VVVNL+AQAGVRYSI NP +Y+ SN++GF NILE  RH  
Sbjct  58   KVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFN  117

Query  159  VEHLVYASSSSVYGGNKKVPFSTEDKVDNPVSLYAATKKSNELMAHAYSKLYDIPSTGLR  218
            +++L+YASSSSVYG+N   PFST D++D+P+SLYAATKKSNELMAH+YS LY++P+TGLR
Sbjct  118  IQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLR  177

Query  219  FFTVYGPAGRPDMAYFGFTNKLLAGETIKIFNYGNCQRDFTYIDDIVEGIVRVIQ--GAP  276
            FFTVYGP GRPDMA F FT+ ++ +++I ++N GN  RDFTY+DDIVE+I R+++  ++P
Sbjct  178  FFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASP  237

Query  277  TRQ----TGEDGLPVPPYALYNIGCGHPENLLDFVTTLQEELIRAEVLPDDYDFEAHKEL  332
             ++      + G + +PY +YNIG   P  L++FV ++++ L +          EA+K+ 
Sbjct  238  NKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGK----------EARKNY  287

Query  333  VPMQPGDVPVTYADTEALTRDYGYRPTTSLRDGLRRFAEWYKQYYM  378
            + +QPGDVP TYA+ + L RD +++P T+++DG+ +F +WY +YY 
Sbjct  288  MDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

518) W91_1436 in NC_017867


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  283 bits (1060),  Expect = 8e-78, Method: Compositional matrix adjust.
 Identities = 169/346 (49%), Positives = 252/346 (73%), Gaps = 19/346 (5%)

Query  39   KTILITGAAGFIGWNLAERLLHSYPDITIVGLDNLNDYYDVKLKEARLERLTKYPNLIFE  98
              ILITG+AGFIG +LA +L+    +  ++G+D++NDYY V LKE RL  + K  N+ F+
Sbjct  1    MKILITGTAGFIGSHLAKKLIK--QGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFN  57

Query  99   KGDLSDKKLIGRLFEKHHFDVVVNLGAQAGVRYSITNPDAYVSSNLIGFYNILEACRHNP  158
            K  L +   ++++F  ++ +VVVNL+AQAGVRYSI NP +Y+ SN++GF NILE  RH  
Sbjct  58   KVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFN  117

Query  159  VEHLVYASSSSVYGGNKKVPFSTEDKVDNPVSLYAATKKSNELMAHAYSKLYDIPSTGLR  218
            +++L+YASSSSVYG+N   PFST D++D+P+SLYAATKKSNELMAH+YS LY++P+TGLR
Sbjct  118  IQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLR  177

Query  219  FFTVYGPAGRPDMAYFGFTNKLLAGETIKIFNYGNCQRDFTYIDDIVEGIVRVIQ--GAP  276
            FFTVYGP GRPDMA F FT+ ++ +++I ++N GN  RDFTY+DDIVE+I R+++  ++P
Sbjct  178  FFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASP  237

Query  277  TRQ----TGEDGLPVPPYALYNIGCGHPENLLDFVTTLQEELIRAEVLPDDYDFEAHKEL  332
             ++      + G + +PY +YNIG   P  L++FV ++++ L +          EA+K+ 
Sbjct  238  NKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGK----------EARKNY  287

Query  333  VPMQPGDVPVTYADTEALTRDYGYRPTTSLRDGLRRFAEWYKQYYM  378
            + +QPGDVP TYA+ + L RD +++P T+++DG+ +F +WY +YY 
Sbjct  288  MDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

519) Balac_1399 in NC_012814


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  283 bits (1060),  Expect = 8e-78, Method: Compositional matrix adjust.
 Identities = 169/346 (49%), Positives = 252/346 (73%), Gaps = 19/346 (5%)

Query  39   KTILITGAAGFIGWNLAERLLHSYPDITIVGLDNLNDYYDVKLKEARLERLTKYPNLIFE  98
              ILITG+AGFIG +LA +L+    +  ++G+D++NDYY V LKE RL  + K  N+ F+
Sbjct  1    MKILITGTAGFIGSHLAKKLIK--QGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFN  57

Query  99   KGDLSDKKLIGRLFEKHHFDVVVNLGAQAGVRYSITNPDAYVSSNLIGFYNILEACRHNP  158
            K  L +   ++++F  ++ +VVVNL+AQAGVRYSI NP +Y+ SN++GF NILE  RH  
Sbjct  58   KVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFN  117

Query  159  VEHLVYASSSSVYGGNKKVPFSTEDKVDNPVSLYAATKKSNELMAHAYSKLYDIPSTGLR  218
            +++L+YASSSSVYG+N   PFST D++D+P+SLYAATKKSNELMAH+YS LY++P+TGLR
Sbjct  118  IQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLR  177

Query  219  FFTVYGPAGRPDMAYFGFTNKLLAGETIKIFNYGNCQRDFTYIDDIVEGIVRVIQ--GAP  276
            FFTVYGP GRPDMA F FT+ ++ +++I ++N GN  RDFTY+DDIVE+I R+++  ++P
Sbjct  178  FFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASP  237

Query  277  TRQ----TGEDGLPVPPYALYNIGCGHPENLLDFVTTLQEELIRAEVLPDDYDFEAHKEL  332
             ++      + G + +PY +YNIG   P  L++FV ++++ L +          EA+K+ 
Sbjct  238  NKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGK----------EARKNY  287

Query  333  VPMQPGDVPVTYADTEALTRDYGYRPTTSLRDGLRRFAEWYKQYYM  378
            + +QPGDVP TYA+ + L RD +++P T+++DG+ +F +WY +YY 
Sbjct  288  MDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

520) Bl12_1315 in NC_021593


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  283 bits (1060),  Expect = 8e-78, Method: Compositional matrix adjust.
 Identities = 169/346 (49%), Positives = 252/346 (73%), Gaps = 19/346 (5%)

Query  39   KTILITGAAGFIGWNLAERLLHSYPDITIVGLDNLNDYYDVKLKEARLERLTKYPNLIFE  98
              ILITG+AGFIG +LA +L+    +  ++G+D++NDYY V LKE RL  + K  N+ F+
Sbjct  1    MKILITGTAGFIGSHLAKKLIK--QGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFN  57

Query  99   KGDLSDKKLIGRLFEKHHFDVVVNLGAQAGVRYSITNPDAYVSSNLIGFYNILEACRHNP  158
            K  L +   ++++F  ++ +VVVNL+AQAGVRYSI NP +Y+ SN++GF NILE  RH  
Sbjct  58   KVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFN  117

Query  159  VEHLVYASSSSVYGGNKKVPFSTEDKVDNPVSLYAATKKSNELMAHAYSKLYDIPSTGLR  218
            +++L+YASSSSVYG+N   PFST D++D+P+SLYAATKKSNELMAH+YS LY++P+TGLR
Sbjct  118  IQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLR  177

Query  219  FFTVYGPAGRPDMAYFGFTNKLLAGETIKIFNYGNCQRDFTYIDDIVEGIVRVIQ--GAP  276
            FFTVYGP GRPDMA F FT+ ++ +++I ++N GN  RDFTY+DDIVE+I R+++  ++P
Sbjct  178  FFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASP  237

Query  277  TRQ----TGEDGLPVPPYALYNIGCGHPENLLDFVTTLQEELIRAEVLPDDYDFEAHKEL  332
             ++      + G + +PY +YNIG   P  L++FV ++++ L +          EA+K+ 
Sbjct  238  NKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGK----------EARKNY  287

Query  333  VPMQPGDVPVTYADTEALTRDYGYRPTTSLRDGLRRFAEWYKQYYM  378
            + +QPGDVP TYA+ + L RD +++P T+++DG+ +F +WY +YY 
Sbjct  288  MDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

521) BLC1_1356 in NC_017216


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  283 bits (1060),  Expect = 8e-78, Method: Compositional matrix adjust.
 Identities = 169/346 (49%), Positives = 252/346 (73%), Gaps = 19/346 (5%)

Query  39   KTILITGAAGFIGWNLAERLLHSYPDITIVGLDNLNDYYDVKLKEARLERLTKYPNLIFE  98
              ILITG+AGFIG +LA +L+    +  ++G+D++NDYY V LKE RL  + K  N+ F+
Sbjct  1    MKILITGTAGFIGSHLAKKLIK--QGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFN  57

Query  99   KGDLSDKKLIGRLFEKHHFDVVVNLGAQAGVRYSITNPDAYVSSNLIGFYNILEACRHNP  158
            K  L +   ++++F  ++ +VVVNL+AQAGVRYSI NP +Y+ SN++GF NILE  RH  
Sbjct  58   KVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFN  117

Query  159  VEHLVYASSSSVYGGNKKVPFSTEDKVDNPVSLYAATKKSNELMAHAYSKLYDIPSTGLR  218
            +++L+YASSSSVYG+N   PFST D++D+P+SLYAATKKSNELMAH+YS LY++P+TGLR
Sbjct  118  IQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLR  177

Query  219  FFTVYGPAGRPDMAYFGFTNKLLAGETIKIFNYGNCQRDFTYIDDIVEGIVRVIQ--GAP  276
            FFTVYGP GRPDMA F FT+ ++ +++I ++N GN  RDFTY+DDIVE+I R+++  ++P
Sbjct  178  FFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASP  237

Query  277  TRQ----TGEDGLPVPPYALYNIGCGHPENLLDFVTTLQEELIRAEVLPDDYDFEAHKEL  332
             ++      + G + +PY +YNIG   P  L++FV ++++ L +          EA+K+ 
Sbjct  238  NKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGK----------EARKNY  287

Query  333  VPMQPGDVPVTYADTEALTRDYGYRPTTSLRDGLRRFAEWYKQYYM  378
            + +QPGDVP TYA+ + L RD +++P T+++DG+ +F +WY +YY 
Sbjct  288  MDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

522) BALAC2494_01337 in NC_017215


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  283 bits (1060),  Expect = 8e-78, Method: Compositional matrix adjust.
 Identities = 169/346 (49%), Positives = 252/346 (73%), Gaps = 19/346 (5%)

Query  39   KTILITGAAGFIGWNLAERLLHSYPDITIVGLDNLNDYYDVKLKEARLERLTKYPNLIFE  98
              ILITG+AGFIG +LA +L+    +  ++G+D++NDYY V LKE RL  + K  N+ F+
Sbjct  1    MKILITGTAGFIGSHLAKKLIK--QGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFN  57

Query  99   KGDLSDKKLIGRLFEKHHFDVVVNLGAQAGVRYSITNPDAYVSSNLIGFYNILEACRHNP  158
            K  L +   ++++F  ++ +VVVNL+AQAGVRYSI NP +Y+ SN++GF NILE  RH  
Sbjct  58   KVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFN  117

Query  159  VEHLVYASSSSVYGGNKKVPFSTEDKVDNPVSLYAATKKSNELMAHAYSKLYDIPSTGLR  218
            +++L+YASSSSVYG+N   PFST D++D+P+SLYAATKKSNELMAH+YS LY++P+TGLR
Sbjct  118  IQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLR  177

Query  219  FFTVYGPAGRPDMAYFGFTNKLLAGETIKIFNYGNCQRDFTYIDDIVEGIVRVIQ--GAP  276
            FFTVYGP GRPDMA F FT+ ++ +++I ++N GN  RDFTY+DDIVE+I R+++  ++P
Sbjct  178  FFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASP  237

Query  277  TRQ----TGEDGLPVPPYALYNIGCGHPENLLDFVTTLQEELIRAEVLPDDYDFEAHKEL  332
             ++      + G + +PY +YNIG   P  L++FV ++++ L +          EA+K+ 
Sbjct  238  NKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGK----------EARKNY  287

Query  333  VPMQPGDVPVTYADTEALTRDYGYRPTTSLRDGLRRFAEWYKQYYM  378
            + +QPGDVP TYA+ + L RD +++P T+++DG+ +F +WY +YY 
Sbjct  288  MDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

523) Balat_1399 in NC_012815


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  283 bits (1060),  Expect = 8e-78, Method: Compositional matrix adjust.
 Identities = 169/346 (49%), Positives = 252/346 (73%), Gaps = 19/346 (5%)

Query  39   KTILITGAAGFIGWNLAERLLHSYPDITIVGLDNLNDYYDVKLKEARLERLTKYPNLIFE  98
              ILITG+AGFIG +LA +L+    +  ++G+D++NDYY V LKE RL  + K  N+ F+
Sbjct  1    MKILITGTAGFIGSHLAKKLIK--QGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFN  57

Query  99   KGDLSDKKLIGRLFEKHHFDVVVNLGAQAGVRYSITNPDAYVSSNLIGFYNILEACRHNP  158
            K  L +   ++++F  ++ +VVVNL+AQAGVRYSI NP +Y+ SN++GF NILE  RH  
Sbjct  58   KVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFN  117

Query  159  VEHLVYASSSSVYGGNKKVPFSTEDKVDNPVSLYAATKKSNELMAHAYSKLYDIPSTGLR  218
            +++L+YASSSSVYG+N   PFST D++D+P+SLYAATKKSNELMAH+YS LY++P+TGLR
Sbjct  118  IQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLR  177

Query  219  FFTVYGPAGRPDMAYFGFTNKLLAGETIKIFNYGNCQRDFTYIDDIVEGIVRVIQ--GAP  276
            FFTVYGP GRPDMA F FT+ ++ +++I ++N GN  RDFTY+DDIVE+I R+++  ++P
Sbjct  178  FFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASP  237

Query  277  TRQ----TGEDGLPVPPYALYNIGCGHPENLLDFVTTLQEELIRAEVLPDDYDFEAHKEL  332
             ++      + G + +PY +YNIG   P  L++FV ++++ L +          EA+K+ 
Sbjct  238  NKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGK----------EARKNY  287

Query  333  VPMQPGDVPVTYADTEALTRDYGYRPTTSLRDGLRRFAEWYKQYYM  378
            + +QPGDVP TYA+ + L RD +++P T+++DG+ +F +WY +YY 
Sbjct  288  MDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

524) BalV_1356 in NC_017217


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  283 bits (1060),  Expect = 8e-78, Method: Compositional matrix adjust.
 Identities = 169/346 (49%), Positives = 252/346 (73%), Gaps = 19/346 (5%)

Query  39   KTILITGAAGFIGWNLAERLLHSYPDITIVGLDNLNDYYDVKLKEARLERLTKYPNLIFE  98
              ILITG+AGFIG +LA +L+    +  ++G+D++NDYY V LKE RL  + K  N+ F+
Sbjct  1    MKILITGTAGFIGSHLAKKLIK--QGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFN  57

Query  99   KGDLSDKKLIGRLFEKHHFDVVVNLGAQAGVRYSITNPDAYVSSNLIGFYNILEACRHNP  158
            K  L +   ++++F  ++ +VVVNL+AQAGVRYSI NP +Y+ SN++GF NILE  RH  
Sbjct  58   KVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFN  117

Query  159  VEHLVYASSSSVYGGNKKVPFSTEDKVDNPVSLYAATKKSNELMAHAYSKLYDIPSTGLR  218
            +++L+YASSSSVYG+N   PFST D++D+P+SLYAATKKSNELMAH+YS LY++P+TGLR
Sbjct  118  IQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLR  177

Query  219  FFTVYGPAGRPDMAYFGFTNKLLAGETIKIFNYGNCQRDFTYIDDIVEGIVRVIQ--GAP  276
            FFTVYGP GRPDMA F FT+ ++ +++I ++N GN  RDFTY+DDIVE+I R+++  ++P
Sbjct  178  FFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASP  237

Query  277  TRQ----TGEDGLPVPPYALYNIGCGHPENLLDFVTTLQEELIRAEVLPDDYDFEAHKEL  332
             ++      + G + +PY +YNIG   P  L++FV ++++ L +          EA+K+ 
Sbjct  238  NKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGK----------EARKNY  287

Query  333  VPMQPGDVPVTYADTEALTRDYGYRPTTSLRDGLRRFAEWYKQYYM  378
            + +QPGDVP TYA+ + L RD +++P T+++DG+ +F +WY +YY 
Sbjct  288  MDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

525) wbnF in NC_005296


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  282 bits (1057),  Expect = 1e-77, Method: Compositional matrix adjust.
 Identities = 169/332 (51%), Positives = 242/332 (73%), Gaps = 9/332 (2%)

Query  24   VLVTGAAGFIGYHVARELLEAGNVVVGLDSLNDYYDPALKQARLDLLTPYPGFSFVHADL  83
            +L+TG+AGFIG H+A+ L+  G+ V+G+DS+NDYY  +LK+ RL  +     F+F    L
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKVKL  61

Query  84   SDRPAIADLFAKHRFPVVIHLAAQAGVRHSLSHPHDYADSNLEGFLNVLEGCRHNGCSHL  143
             +   ++ +F  ++  VV++LAAQAGVR S+ +P+ Y DSN+ GF+N+LE  RH    +L
Sbjct  62   ENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNL  121

Query  144  IYASSSSVYGANTKLPFSVDDPTDHPISLYAATKKANELMAHCYSHLYRLPTTGLRFFTI  203
            IYASSSSVYGANT  PFS  D  DHP+SLYAATKK+NELMAH YSHLY LPTTGLRFFT+
Sbjct  122  IYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTV  181

Query  204  YGPWYRPDMALYLFARAITEGRPIKLFNHGKMrrdftfvddvtrvvtKLMTLVPTAEPGQ  263
            YGPW RPDMAL+ F++AI ++++I ++NHG+M RDFT+VDD+   +++L+   ++++   
Sbjct  182  YGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEW  241

Query  264  NGGAPA--------RVYNVGNHSPEELMHVVALLERELGRPAIKEMLPMQPGDVPETFAD  315
            +G+ P         +VYN+GN+SP  LM+ V  +E  LG+ A K+ + +QPGDVPET+A+
Sbjct  242  SGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYAN  301

Query  316  VEALFRDVGFRPSTPIEDGVRAFVRWFRDYHR  347
            V+ LFRD++F+P T I+DGV  FV W+ +Y +
Sbjct  302  VDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

526) Rsph17029_4095 in NC_009040


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  282 bits (1056),  Expect = 1e-77, Method: Compositional matrix adjust.
 Identities = 163/332 (50%), Positives = 250/332 (76%), Gaps = 5/332 (1%)

Query  3    RILVTGTAGFIGFHLARLLLAEGFRVHGYDGMTDYYDVALKRRRHAMLLQDPNFSATEGM  62
            +IL+TGTAGFIG HLA+ L+ +G  V G D++ DYY V+LK  R   + ++ NF+     
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKVK  60

Query  63   LEDQALFDRVADEFAPEVIVHLAAQAGVRYSVENPRAYLDANVIGSFSVMEAARRLKVAH  122
            LE+   + +V  +  PEV+V+LAAQAGVRYS+ENPR+Y+D+N++G  +++E +R++++ +
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  123  LMMASTSSVYGANEEMPFRETDKADRQLTIYAATKKANESMGHAWAHVHGLPITMFRFFT  182
            L+ AS+SSVYGAN   PF  +D+ D+ L++YAATKK+NE M+H+ +H+  LP T +RFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  183  VYGPWGRPDLALFRFVEAILEDRPIEIYNHGEMWRDFTYVDDLVRAIRLLIEAVPGGPE-  241
            VYGPWGRPD+ALF+F  AI++D++I++YNHG+M RDFTYVDD+V AI  L+   P++P+ 
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKK-PASPNK  239

Query  242  --TAVEEDSLSPAAPFRIVNIGNSDKVRLLDFVEAIEESLGRRAIRSYLPMQVGDVPATW  299
              ++ + D+ S+ AP+++ NIGN+  VRL++FVEAIE+ LG+ A ++Y+ +Q GDVP T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  300  ADAGLLQRLTGYRPQTDIRDGIAQFVSWYRDY  331
            A+ + L R  +++P+T I+DG+ +FV WY +Y
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEY  331

527) KE3_0784 in NC_021900


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  282 bits (1054),  Expect = 2e-77, Method: Compositional matrix adjust.
 Identities = 178/342 (53%), Positives = 254/342 (75%), Gaps = 17/342 (4%)

Query  11   IFVTGVAGFIGSNVASRLLEEYHCKVVGIDNMNDYYDVKIKEWRLEKLKKLGLAFIKGDL  70
            I++TG AGFIGS++A +L+ + H  V+G+D++NDYY V +KE RL  + K  ++F K  L
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHY-VIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVKL  61

Query  71   SDRTTIDNIFETYKPAVVVNLGAQAGVRYSIENPDTYISSNVIGFYNILEACRWNNVEHL  130
             +   + ++F   +P VVVNL+AQAGVRYSIENP TYI SN++GF NILE  R  N+++L
Sbjct  62   ENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNL  121

Query  131  VYASSSSVYGSNKKVPYSVDDKVDNPVSLYAATKKSNELMAHAYSKLYNIPSTGLRFFTV  190
            +YASSSSVYG+N   P+S  D++D+P+SLYAATKKSNELMAH+YS LYN+P+TGLRFFTV
Sbjct  122  IYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTV  181

Query  191  YGPAGRPDMAYFGFTDKLKNGETIKIFNYGNCKRDFTYIDDIVEGVIRVMQ--GAPEKK-  247
            YGP GRPDMA F FT  + N+++I ++N GN  RDFTY+DDIVE++ R+++  ++P+K  
Sbjct  182  YGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEW  241

Query  248  NGVD---GLPIPPYAVYNIGNSSPENLLDFVQILSEELVRAGVLPEHYDFESHKELVSMQ  304
            +G D   G + +PY VYNIGN+SP  L++FV+ + + L +          E++K+ + +Q
Sbjct  242  SGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGK----------EARKNYMDLQ  291

Query  305  PGDVPVTYADTEPLQRDFGFKPNTDLRTGLRKFAEWYKEFYK  346
            PGDVP TYA+ + L RD++FKP+T ++ G+ KF +WY E+YK
Sbjct  292  PGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

528) RSP_3926 in NC_009007


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  282 bits (1055),  Expect = 2e-77, Method: Compositional matrix adjust.
 Identities = 163/332 (50%), Positives = 249/332 (75%), Gaps = 5/332 (1%)

Query  3    RILVTGTAGFIGFHLARLLLAEGFRVHGYDGMTDYYDVALKRRRHAMLLQDPNFSATEGM  62
            +IL+TGTAGFIG HLA+ L+ +G  V G D++ DYY V+LK  R   + ++ NF+     
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKVK  60

Query  63   LEDQALFDRVADEFAPEVIVHLAAQAGVRYSVENPRAYLDANVIGSFTVMEAARRLKVAH  122
            LE+   + +V  +  PEV+V+LAAQAGVRYS+ENPR+Y+D+N++G   ++E +R++++ +
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  123  LMMASTSSVYGANEEMPFRETDKADRQLTIYAATKKANESMGHAWAHVHGLPITMFRFFT  182
            L+ AS+SSVYGAN   PF  +D+ D+ L++YAATKK+NE M+H+ +H+  LP T +RFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  183  VYGPWGRPDLALFRFVEAILEDRPIEIYNHGEMWRDFTYVDDLVRAIRLLIEAVPGGPE-  241
            VYGPWGRPD+ALF+F  AI++D++I++YNHG+M RDFTYVDD+V AI  L+   P++P+ 
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKK-PASPNK  239

Query  242  --TAVEEDSLSPAAPFRIVNIGNSDKVRLLDFVEAIEESLGRRAIRSYLPMQVGDVPATW  299
              ++ + D+ S+ AP+++ NIGN+  VRL++FVEAIE+ LG+ A ++Y+ +Q GDVP T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  300  ADAGLLQRLTGYRPQTDIRDGIAQFVSWYRDY  331
            A+ + L R  +++P+T I+DG+ +FV WY +Y
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEY  331

529) RSKD131_4531 in NC_011960


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  282 bits (1055),  Expect = 2e-77, Method: Compositional matrix adjust.
 Identities = 163/332 (50%), Positives = 249/332 (75%), Gaps = 5/332 (1%)

Query  3    RILVTGTAGFIGFHLARLLLAEGFRVHGYDGMTDYYDVALKRRRHAMLLQDPNFSATEGM  62
            +IL+TGTAGFIG HLA+ L+ +G  V G D++ DYY V+LK  R   + ++ NF+     
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKVK  60

Query  63   LEDQALFDRVADEFAPEVIVHLAAQAGVRYSVENPRAYLDANVIGSFTVMEAARRLKVAH  122
            LE+   + +V  +  PEV+V+LAAQAGVRYS+ENPR+Y+D+N++G   ++E +R++++ +
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  123  LMMASTSSVYGANEEMPFRETDKADRQLTIYAATKKANESMGHAWAHVHGLPITMFRFFT  182
            L+ AS+SSVYGAN   PF  +D+ D+ L++YAATKK+NE M+H+ +H+  LP T +RFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  183  VYGPWGRPDLALFRFVEAILEDRPIEIYNHGEMWRDFTYVDDLVRAIRLLIEAVPGGPE-  241
            VYGPWGRPD+ALF+F  AI++D++I++YNHG+M RDFTYVDD+V AI  L+   P++P+ 
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKK-PASPNK  239

Query  242  --TAVEEDSLSPAAPFRIVNIGNSDKVRLLDFVEAIEESLGRRAIRSYLPMQVGDVPATW  299
              ++ + D+ S+ AP+++ NIGN+  VRL++FVEAIE+ LG+ A ++Y+ +Q GDVP T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  300  ADAGLLQRLTGYRPQTDIRDGIAQFVSWYRDY  331
            A+ + L R  +++P+T I+DG+ +FV WY +Y
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEY  331

530) capI in NC_014484


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  282 bits (1054),  Expect = 2e-77, Method: Compositional matrix adjust.
 Identities = 171/346 (50%), Positives = 244/346 (71%), Gaps = 14/346 (4%)

Query  1    MRFLVTGSAGFVGFHLVDFLLRKGHEVVGIDNLSPYYDVGLKKARLAEHGIVVGERGEGM  60
            M++L+TG+AGF+G HL   L+++GH V+G+D+++ YY V+LK  RL      +G      
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKS----IGKENFTF  56

Query  61   RSRIWEGYIFYFEDVRDRVFLETLLRRHGVERVIHLAAQAGVRYSLTHPEVYLQSNIEGF  120
                 E Y    +D+  +VF++     +  E V++LAAQAGVRYS+ +P  Y++SNI GF
Sbjct  57   NKVKLENY----DDL-SKVFVD-----EQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGF  106

Query  121  WAVLEASRRCGVERLVYASTSSVYGLNEKVPFSERDGVDHPVSLYAATKRSNELFAHVYS  180
              +LE SR+  ++ L+YAS+SSVYG N   PFS  D +DHP+SLYAATK+SNEL AH YS
Sbjct  107  MNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYS  166

Query  181  HIYGLPTIGLRFFTVYGPWGRPDMAYFSFTERILKGEPIEVFNHGHMERDFTYVEDVVEG  240
            H+Y LPT GLRFFTVYGPWGRPDMA F FT  I+++++I+V+NHG+M RDFTYV+D+VE+
Sbjct  167  HLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEA  226

Query  241  VARVAEHPLperrdwdpgdprpdrSSAPFWVYNIGHGSPVGLMDFIRAIEEALGREARIV  300
            ++R+   P +  ++W  +DP P+ S AP+ VYNIG+ SPV LM+F+ AIE+ LG+EAR  
Sbjct  227  ISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKN  286

Query  301  YREMQPGDVVATHASTKSLEEAVGYRPSTPLSEGIRRFVAWYCSYY  346
            Y ++QPGDV  T A+   L   ++++P T + +G+ +FV WY  YY
Sbjct  287  YMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

531) BLA_0602 in NC_011835


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  282 bits (1054),  Expect = 2e-77, Method: Compositional matrix adjust.
 Identities = 169/345 (49%), Positives = 252/345 (74%), Gaps = 19/345 (5%)

Query  7    TILITGAAGFIGWNLAERLLHSYPDITIVGLDNLNDYYDVKLKEARLERLTKYPNLIFEK  66
             ILITG+AGFIG +LA +L+    +  ++G+D++NDYY V LKE RL  + K  N+ F+K
Sbjct  2    KILITGTAGFIGSHLAKKLIK--QGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNK  58

Query  67   GDLSDKKLIGRLFEKHHFDVVVNLGAQAGVRYSITNPDAYVSSNLIGFYNILEACRHNPV  126
              L +   ++++F  ++ +VVVNL+AQAGVRYSI NP +Y+ SN++GF NILE  RH  +
Sbjct  59   VKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNI  118

Query  127  EHLVYASSSSVYGGNKKVPFSTEDKVDNPVSLYAATKKSNELMAHAYSKLYDIPSTGLRF  186
            ++L+YASSSSVYG+N   PFST D++D+P+SLYAATKKSNELMAH+YS LY++P+TGLRF
Sbjct  119  QNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRF  178

Query  187  FTVYGPAGRPDMAYFGFTNKLLAGETIKIFNYGNCQRDFTYIDDIVEGIVRVIQ--GAPT  244
            FTVYGP GRPDMA F FT+ ++ +++I ++N GN  RDFTY+DDIVE+I R+++  ++P 
Sbjct  179  FTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPN  238

Query  245  RQ----TGEDGLPVPPYALYNIGCGHPENLLDFVTTLQEELIRAEVLPDDYDFEAHKELV  300
            ++      + G + +PY +YNIG   P  L++FV ++++ L +          EA+K+ +
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGK----------EARKNYM  288

Query  301  PMQPGDVPVTYADTEALTRDYGYRPTTSLRDGLRRFAEWYKQYYM  345
             +QPGDVP TYA+ + L RD +++P T+++DG+ +F +WY +YY 
Sbjct  289  DLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

532) Swit_0844 in NC_009511


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  282 bits (1055),  Expect = 2e-77, Method: Compositional matrix adjust.
 Identities = 163/334 (49%), Positives = 244/334 (74%), Gaps = 8/334 (2%)

Query  1    MAILITGAAGFIGMHCSLRLLARGDSVVGIDNLNDYYPVQLKRDRVARVATEGGDRYRFI  60
            M ILITG+AGFIG H + +L+ +G+ V+G+D++NDYY+V LK DR+  +   G + + F 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI---GKENFTFN  57

Query  61   PCDFADHaaleaalagleIDRIIHLGAQAGVRYSIENPRAYAQSNLVGHLNILELARERR  120
               + +   L   + + + + +++L+AQAGVRYSIENPR+Y +SN+VG +NILE +R+  
Sbjct  58   KVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFN  117

Query  121  AGHLVYASSSSVYGGNETLPFRVEDRVDHPLSLYAATKKADELMSETYAHLYRLPQTGLR  180
              +L+YASSSSVYG+N + PF   D +DHPLSLYAATKK++ELM++TY+HLY LP TGLR
Sbjct  118  IQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLR  177

Query  181  FFTVYGPWGRPDMALWLFTDAILRGRPIQVFNGGEMRRDFTYIDDIVTGVVAALDHPPAD  240
            FFTVYGPWGRPDMAL  FT AI+ +++I+V+N G+M RDFTY+DDIV ++   +  P++ 
Sbjct  178  FFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASP  237

Query  241  D-----GQAKAGGSVSPHAVYNIGNHRSEELTRLIDLIEAACGRPAIREMKPMQPGDVRE  295
            +     +++ +G+S +P  VYNIGN+ +  L  +++ IE   G+ A ++   +QPGDV E
Sbjct  238  NKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPE  297

Query  296  TFADIGAIERDLGFRPTTDISDGVPRFVDWFRDY  329
            T+A+++ + RD++F+P T I DGV +FVDW+ +Y
Sbjct  298  TYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEY  331

533) RUM_09610 in NC_021039


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  281 bits (1053),  Expect = 3e-77, Method: Compositional matrix adjust.
 Identities = 174/350 (50%), Positives = 254/350 (73%), Gaps = 25/350 (7%)

Query  13   ILVTGAAGFIGANLVTALLNTVKDIKLVGLDNINDYYDVSIKEYRLSEIRKLAAAKPDCT  72
            IL+TG+AGFIG++L   L++    +  +G+D+INDYY VS+KE RL  I K         
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYV--IGVDSINDYYSVSLKEDRLKSIGK-------EN  53

Query  73   WTFIKGNLADKALIEKIFTESKPEMVVNLAAQAGVRYSITNPDVYVESNLVGFYNILEAC  132
             TF K +L +   + K+F + +PE+VVNLAAQAGVRYSI NP  Y++SN+VGF NILE  
Sbjct  54   FTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECS  113

Query  133  RNHPVEHLVYASSSSVYGSNKKVPYSTDDKVDNPVSLYAATKKSNELLAHAYSKLYNIPS  192
            R+  +++L+YASSSSVYG+N   P+ST D++D+P+SLYAATKKSNEL+AH+YS LYN+P+
Sbjct  114  RHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPT  173

Query  193  TGLRFFTVYGPAGRPDMAYFSFTNKLLKGETIQIFNFGNCKRDFTYVDDIVEGIKRVMER  252
            TGLRFFTVYGP GRPDMA F FT+ ++++++I+++N GN  RDFTYVDDIVE+I R++ +
Sbjct  174  TGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKK  233

Query  253  --APEKK----NGDDGLPLPPYRIYNIGNSTPENLLDFVTVLQEELIRADVLPSDYDFES  306
              +P+K     + D G + +PY++YNIGN++P  L++FV  +++ L +          E+
Sbjct  234  PASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGK----------EA  283

Query  307  HKKLVPMQPGDVPVTYADTSALEQDTGFKPNTPLRTGLCKFAEWYKKFYN  356
            +K+ + +QPGDVP TYA+   L +D +FKP+T ++ G+ KF +WY  +Y+
Sbjct  284  RKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

534) Plav_1922 in NC_009719


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  280 bits (1048),  Expect = 6e-77, Method: Compositional matrix adjust.
 Identities = 160/335 (48%), Positives = 236/335 (71%), Gaps = 15/335 (4%)

Query  1    MTILVTGAAGFIGSYLCHYLLDRGDEVVGVDDLNDYYDPALKAARLERLTGRNGFSFVRA  60
            M IL+TG+AGFIGS L   L+ +G+ V+GVD +NDYY  +LK  RL  + G++ F+F + 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  61   DISDKDALAEAVSGRRIAKVAHLAAQAGVRYSLENPRAYVRSNLTGHLEILELCRGLGTV  120
             + + D L+    + +   V +LAAQAGVRYS+ENPR+Y+ SN+ G ++ILE C     +
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILE-CSRHFNI  118

Query  121  EHLVYASSSSVYGGNEKVPFSEADPVDHPVSLYAATKKADELMSHAYAHLYGIKQTGLRF  180
            ++L+YASSSSVYG+N   PFS +D +DHP+SLYAATKK++ELM+H+Y+HLY +  TGLRF
Sbjct  119  QNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRF  178

Query  181  FTVYGPWGRPDMAYWIFTEAMLKGKPIRVFNDGDMWRDFTYIDDIISGTV----------  230
            FTVYGPWGRPDMA   FT A++++++I V+N+G+M RDFTY+DDI+ +            
Sbjct  179  FTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPN  238

Query  231  ---AALDHAPAGKGAPHRIYNIGHNKPERLGRFIDILEEVLGVKAVRQYEPMQPGDVPRT  287
               ++ D  P++  AP ++YNIG+N P RL  F++ +E+ LG  A ++Y  +QPGDVP T
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPET  298

Query  288  FADITAIERDLGFSPKTGLREGLAAFADWYRGYYR  322
            +A++  + RD++F P T +++G+  F DWY  YY+
Sbjct  299  YANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

535) G432_07445 in NC_020561


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  280 bits (1047),  Expect = 7e-77, Method: Compositional matrix adjust.
 Identities = 161/334 (49%), Positives = 245/334 (74%), Gaps = 8/334 (2%)

Query  1    MTILITGAAGFIGQQVAARLLARGDRVIGIDNLNDYYPVALKRARIADLETRFGDAFRFA  60
            M ILITG+AGFIG ++A +L+ +G+ VIG+D++NDYY+V+LK  R+  +     + F F 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK---ENFTFN  57

Query  61   QIDFADHEalaralagaaISGIVHLGAQAGVRYSIENPRAYAQSNLVGHLNMLEVARERP  120
            ++ + + + L++ + +     +V+L+AQAGVRYSIENPR+Y +SN+VG +N+LE +R+  
Sbjct  58   KVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFN  117

Query  121  GVPMVYASSSSVYGANESLPFRVEDRVDHPVSLYAATKKADELMSETYAHLYRIPLTGLR  180
               ++YASSSSVYGAN S PF   D +DHP+SLYAATKK++ELM++TY+HLY +P TGLR
Sbjct  118  IQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLR  177

Query  181  FFTVYGPWGRPDMAVWLFTRAILAGDPIRVFNGGDMRRDFTYIDDIVTGVVASLDNPPPD  240
            FFTVYGPWGRPDMA+  FT+AI+ +++I V+N G+M RDFTY+DDIV ++   + +P++ 
Sbjct  178  FFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASP  237

Query  241  D-----GQAKAGGSRAPHRLYNIGNHRSEELGRLIDVIEAACGRPAIRDYQPMQPGDVKE  295
            +     +++ +G+S AP ++YNIGN+ +  L  +++ IE   G+ A ++Y  +QPGDV E
Sbjct  238  NKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPE  297

Query  296  TYADISAIRDDLGYAPTTPIDVGVPRFVDWYRAY  329
            TYA++  +  D+++ P T I+ GV +FVDWY  Y
Sbjct  298  TYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEY  331

536) Psesu_2998 in NC_014924


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  279 bits (1045),  Expect = 1e-76, Method: Compositional matrix adjust.
 Identities = 168/332 (51%), Positives = 251/332 (76%), Gaps = 12/332 (3%)

Query  5    MKILVTGAAGFVGFHTTTRLLGAGHEVVGIDNLNAYYDVGLKQGRLALLKDRPGFSFTKL  64
            MKIL+TG+AGF+G H + +L+  GH V+G+D++N YY V+LK++RL  + ++  F+F K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  65   DLADRAGMASLFQDHAFDLVLHLGAQAGVRYSLENPFAYLDSNLTGMLTVLEGCRHSGVK  124
             L +  +++ +F D+  ++V++L+AQAGVRYS+ENP +Y+DSN+ G + +LE  RH  ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  125  HLVYASSSSVYGSNTKLPFATEDRVDTPVSLYAATKKADELMAHTYAHLYRFPITGLRFF  184
            +L+YASSSSVYG+NT  PF+T D +D P+SLYAATKK++ELMAHTY+HLY +P TGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  185  TVYGPWGRPDMAYYKFANAIMAGKPIDVYNHGDMRRDFTYiddivdaieaivaQ------  238
            TVYGPWGRPDMA +KF++AI+ +++IDVYNHG+M RDFTY+DDIV+AI  +V +      
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  239  -----GPKPSGMDVPHKVYNLGHNHPEQLLDMIellegllgKQAEKRMLPMQPGDVYATY  293
                 +P P++   P KVYN+G+N P +L++ +E +E  LGK+A K  + +QPGDV  TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  294  ADISDISRDYGYTTKTSLANGLKQFVSWYRSY  325
            A++ D+ RD ++   T++ +G+++FV WY  Y
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEY  331

537) capI in NC_017956


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  279 bits (1044),  Expect = 1e-76, Method: Compositional matrix adjust.
 Identities = 162/335 (49%), Positives = 243/335 (73%), Gaps = 14/335 (4%)

Query  1    MTVLITGVAGFIGSHVASVLLDRGEEVLGIDDLNDYYAPSLKQARLDRLLGRRSFIFRKM  60
            M +LITG AGFIGSH+A  L+ +G+ V+G+D +NDYY+ SLK+ RL + +G+ +F F K+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRL-KSIGKENFTFNKV  59

Query  61   DVAEREAI-RSLTEHAPQIDRIVHLAAQAGVRYSIEAPHSYTRANVEGHLCLLELARHLP  119
             + + + + + + ++ P++  +V+LAAQAGVRYSIE P++Y  +N+ G + +LE +RH+ 
Sbjct  60   KLENYDDLSKVFVDEQPEV--VVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHF-  116

Query  120  ELRHMVYASSSSVYGGNAQLPFSEADRVDTPLSLYAATKRAGELMAYTYAHLYKLPLTGL  179
            ++++++YASSSSVYG+N+  PFS +D +D PLSLYAATK++ ELMA TY+HLY+LP TGL
Sbjct  117  NIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGL  176

Query  180  RFFTVYGPWGRPDMSAWLFTDAILSGRPIRVFNEGRMRRDFTYIDDIVSGVISALDTPPV  239
            RFFTVYGPWGRPDM+   FT AI+++++I V+N+G M RDFTY+DDIV ++   +  P+ 
Sbjct  177  RFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPAS  236

Query  240  ---------RGAGADAVPHRIFNLGNNAPVALNDFIRAIETATGREAVKVLEPMQPGDVP  290
                      ++G+   P +++N+GNN+PV L +F+ AIE   G+EA K    +QPGDVP
Sbjct  237  PNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVP  296

Query  291  ATYADIESARDLLGFEPLTSIGDGVRHFVDWFRAY  325
             TYA+++     ++F P T+I DGV  FVDW+  Y
Sbjct  297  ETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEY  331

538) SUB1028 in NC_012004


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  279 bits (1043),  Expect = 2e-76, Method: Compositional matrix adjust.
 Identities = 176/351 (51%), Positives = 256/351 (73%), Gaps = 24/351 (6%)

Query  10   TIFITGAAGFIGSNLVLELLKSGEANLIIGLDNMNDYYDVSLKEFRLSQINDLSQDSASK  69
             I+ITG+AGFIGS+L   L+K G  + +IG+D++NDYY VSLKE RL  I      +  +
Sbjct  2    KILITGTAGFIGSHLAKKLIKQG--HYVIGVDSINDYYSVSLKEDRLKSI------GKEN  53

Query  70   WKFIKGSIADKELIEEVFLQYHPEIVVNLAAQAGVRYSITNPDVYIESNIIGFYNILEAC  129
              F K  + + + +  VF++ +PE+VVNLAAQAGVRYSI NP  YI+SNI+GF NILE  
Sbjct  54   FTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECS  113

Query  130  RHYPVEHLVYASSSSVYGSNAKIPYSTEDKVDTPVSLYAATKKSNELLAHSYSKLYNIPT  189
            RH+ +++L+YASSSSVYG+N+  P+ST D++D P+SLYAATKKSNEL+AH+YS LYN+PT
Sbjct  114  RHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPT  173

Query  190  TGLRFFTVYGPAGRPDMAYFGFTNKLMKGETIQIFNYGNCKRDFTYVDDIVKGVV-LVMN  248
            TGLRFFTVYGP GRPDMA F FT+ ++++++I+++N GN  RDFTYVDDIV ++  LV +
Sbjct  174  TGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKK  233

Query  249  GAPKQEQGPDGLPIP-----PYAIYNIGNSHPENLLDFVTILQEELIAAGVLPEEYDFES  303
             A+ + + +++ P P     PY +YNIGN+ P  L++FV  +++ L            E+
Sbjct  234  PASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGK----------EA  283

Query  304  HKELVAMQPGDVAITYADTSALEKDFGYKPNTSLREGLRKFSEWYYDYYLK  354
            +K+ + +QPGDV+ TYA+   L +D+++KP+T++++G+ KF +WY +YY K
Sbjct  284  RKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

539) Msil_1168 in NC_011666


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  278 bits (1041),  Expect = 2e-76, Method: Compositional matrix adjust.
 Identities = 165/330 (50%), Positives = 248/330 (76%), Gaps = 4/330 (1%)

Query  1    MRILVTGSAGFIGFHMAARLLADGHEVVGVDGFTHYYDPELKRRRNAILSQNPYFTSHAI  60
            M+IL+TG+AGFIG H+A +L+ +GH V+GVD++ +YY   LK  R   ++++  FT + +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKEN-FTFNKV  59

Query  61   LLEDASALKRVY-DAGFDAVYHFAAQAGVRYSLENPRAYVDANLTGAFNLLELMREAPPK  119
             LE+   L +V+ D   + V ++AAQAGVRYS+ENPR+Y+D+N+ G  N+LE  R+   +
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  120  HALMASTSSVYGANTKIPFHETDRADHPLTFYAATKKANEEMAHSYAHLFKIPVTMLRFF  179
            + + AS+SSVYGANT  PF  +D  DHPL++YAATKK+NE MAH+Y+HL+++P T LRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  180  TVYGPWGRPDMALFKFVDAMVEGRPIDVFNHGKMKRDFTFVGDLVEAMALLIDKAPPAPD  239
            TVYGPWGRPDMALFKF  A+V++++IDV+NHG+M RDFT+V+D+VEA++ L+ K++++  
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  240  SRTSPTPDYDSLSPVAPWRIVNIGTERPVGLMDFIEAIETATGLKAERNYLEMQKGDVPL  299
             ++++ P  D+ S+ AP ++ NIG + PV LM+F+EAIE   G  A +NY+++Q GDVP 
Sbjct  240  EWSGADP--DPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPE  297

Query  300  TFASTRLLFELTGYRPATTLAEGVKAFVDW  329
            T+A+   LF   +++P TT+ +GV+ FVDW
Sbjct  298  TYANVDDLFRDIDFKPETTIQDGVNKFVDW  327

540) PRU_1542 in NC_014033


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  278 bits (1041),  Expect = 2e-76, Method: Compositional matrix adjust.
 Identities = 173/349 (50%), Positives = 250/349 (72%), Gaps = 24/349 (6%)

Query  11   ILVTGAAGFIGSYLVHRLFKDVKGATIVGIDNMNDYYDVRLKEYRLKKLNVQCSMFHVQW  70
            IL+TG+AGFIGS L  +L+K+  G  ++G+D++NDYY V LKE RLK +  +   F+   
Sbjct  3    ILITGTAGFIGSHLAKKLIKQ--GHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFN---  57

Query  71   HFVRGDLADKDLIEKLFAQYNFDVVVNLAAQAGVRYSITNPDAYIQSNIIGFYNIIEACR  130
               +  L + D + K+F + + +VVVNLAAQAGVRYSI NP +YI+SNI+GF NI+E  R
Sbjct  58   ---KVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSR  114

Query  131  NHPVEHLVYASSSSVYGGNKKVPFSTDDRVDNPVSLYAATKKSNELMAHCYSKLYDIPTT  190
            +  +++L+YASSSSVYG+N   PFST D +D+P+SLYAATKKSNELMAH YS LY++PTT
Sbjct  115  HFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTT  174

Query  191  GLRFFTVYGPAGRPDMAYFGFTNKLIKGETIQIFNYGNCRRDFTYVDDIVEGIVRVMQGA  250
            GLRFFTVYGP GRPDMA F FT+ ++++++I+++N GN  RDFTYVDDIVE+I R+++ +
Sbjct  175  GLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKP  234

Query  251  PERKKG------EDGLPVPPYAVYNIGGGQPEKLLDFVNILQEELVRAGVLPKDFDFEAH  304
            +  +K       + G + +PY VYNIG   P +L++FV+ +++ L +          EA+
Sbjct  235  ASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGK----------EAR  284

Query  305  KQLVPMQPGDVPATFADATALERDFGFTPKISLREGLRDFSEWYKSYYK  353
            K+ + +QPGDVP T+A+   L RD++F P  ++++G+  F +WY  YYK
Sbjct  285  KNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

541) Mesop_2112 in NC_015675


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  278 bits (1040),  Expect = 3e-76, Method: Compositional matrix adjust.
 Identities = 169/332 (51%), Positives = 248/332 (75%), Gaps = 2/332 (0%)

Query  1    MRYFVTGTAGFIGFHLARRLLDEGHSVTGFDGMTPYYDVTLKQSRHALLQRYGAFRFHIG  60
            M+ ++TGTAGFIG HLA++L+ +GH V G D++  YY V+LK+ R   + +   F F+  
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   QLEDMdalrraadlaNPDVIVHLAAQAGVRYSIDNPRSYTDSNLVGSFNVLELARDLKPR  120
            +LE+ D L +     +P+V+V+LAAQAGVRYSI+NPR+Y DSN+VG  N+LE +R+++ +
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLLIASTSSVYGANETTPFVETDQTDWPLTFYAATKKAVEAMSHSYSHLFQVPTTSFRFF  180
            +L+ AS+SSVYGAN + PF  +D+ D PL++YAATKK+ E M+H+YSHL+++PTT++RFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFKFVDAIENGRPIEIYGEGAMRRDFTYVGDLVEAIVRLIGCAPVCGQ  240
            TVYGPWGRPDMALFKF  AI N+++I++Y +G M RDFTYV+D+VEAI RL+  ++   +
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  241  PVSGPDVVDTLSPVAPWRVVNIGGGQPVELLSFIETIENCLAKRAIRKSLPMQSGDMSVT  300
              SG+D  D  S+ AP +V NIG   PV L+ F+E+IEN L+K A ++ + +Q+GD++ T
Sbjct  240  EWSGAD-PDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPET  298

Query  301  YADPRLLQTLTGFRPETSVEDGVAAFVRWYLQ  332
            YA+   L    +F+PET+++DGV  FV WYL+
Sbjct  299  YANVDDLFRDIDFKPETTIQDGVNKFVDWYLE  330

542) Bache_0967 in NC_014933


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  278 bits (1039),  Expect = 3e-76, Method: Compositional matrix adjust.
 Identities = 168/346 (49%), Positives = 239/346 (70%), Gaps = 30/346 (8%)

Query  8    HILVTGAAGFIGSQLVNALLKQGYNVTGMDNINSYYDTSLKYARLLSAGIVQEEIHDGRP  67
             IL+TG+AGFIGS+L + L+KQG  V G+D+IN YY  SLK  RL S G           
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK----------  51

Query  68   VVSTIFPAYRFIKIDLADRVAMERLFENENFDIVVNLAGQPGVRYSIENPYAYVESNILG  127
                    + F K+ L +   + ++F +E+ ++VVNLA+Q+GVRYSIENP +Y++SNI+G
Sbjct  52   ------ENFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVG  105

Query  128  FLNVLEACRHYAVKHLLYASSSSVYGMDDNVPYSEDDKTDHPVSLYAATKKSNELMAYAY  187
            F+N+LE  RH+ +++L+YASSSSVYG + + P+S  D+ DHP+SLYAATKKSNELMA +Y
Sbjct  106  FMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTY  165

Query  188  SKLYGIPVTGLRFFTVYGPWGRPDMAPYLFMKAILDGKSIKVFNHGNLSRDFTYIDDIVN  247
            S LY +P TGLRFFTVYGPWGRPDMA + F KAI+++++I V+NHGN+ RDFTY+DDIV+
Sbjct  166  SHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVE  225

Query  248  GLLLLIEHPSEEA--------------IPARVYNIGHASPVKLLDFISAIECVTGHKAVM  293
            ++  L+  P+                  P +VYNIG+ SPV+L++F+ AIE   G  A  
Sbjct  226  AISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARK  285

Query  294  QMEDMQPGDVYCTCADVSHLHHDFGYSPEVSMEEGIGCFYDWFKAY  339
            +  D+QPGDV  T A+V +L +D+++ PE ++++G+  F DW+  Y
Sbjct  286  NYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEY  331

543) Odosp_0323 in NC_015160


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  277 bits (1036),  Expect = 6e-76, Method: Compositional matrix adjust.
 Identities = 168/342 (50%), Positives = 234/342 (69%), Gaps = 23/342 (6%)

Query  1    MQVLITGSAGFIGYHLAKALARQGIATYGIDSINSYYDVSLKKARLKACGIDLSRQEQEY  60
            M++LITG+AGFIG HLAK L +QG    G+DSIN YY VSLK  RLK+ G +        
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE--------  52

Query  61   RSTLYPNYTFRQMDLCDKPALDALFASRTFDTVINLAAQAGVRYSLEHPETYIDSNVSGF  120
                  N+TF ++ L +   L  +F     + V+NLAAQAGVRYS+E+P TYIDSN+ GF
Sbjct  53   ------NFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGF  106

Query  121  LHILEGCRHHHIPRLIFASSSSVYGNSTEVPFREDARADHPVSIYAATKKSNELMAYTYS  180
            ++ILE  RH +I  LI+ASSSSVYG +T  PF      DHP+S+YAATKKSNELMA TYS
Sbjct  107  MNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYS  166

Query  181  RLYGLQTVGLRFFTVYGPWGRPDMAPMLFGRSILEDKPIRIFNEGRLSRDFTYIDDIIAG  240
            +LY L T GLRFFTVYGPWGRPDMA   F ++I++D++I ++N+G + RDFTY+DDI+ +
Sbjct  167  HLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEA  226

Query  241  IVTILDHPGLVRED------VPG---VPAVIYNIGHGSPVQLMDFIGLLEQHLGKTARKE  291
            I  ++  P+    +       PG    P  +YNIG+ SPV+LM+F+  +E+ LGK ARK+
Sbjct  227  ISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKN  286

Query  292  FVGMQPGDVYQTWADTTKLHTDYNYRATTSLGKGIEQFALWF  333
            ++++QPGDV +T A+   L  D ++++ T++  G+++F  W+
Sbjct  287  YMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWY  328

544) Cycma_3085 in NC_015914


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  277 bits (1035),  Expect = 7e-76, Method: Compositional matrix adjust.
 Identities = 171/351 (49%), Positives = 242/351 (69%), Gaps = 34/351 (9%)

Query  7    KILVTGAAGFIGYHLCEKLLSLGHEVIGLDNINDYYDTGLKFGRLERLGISGEDRIVYNQ  66
            KIL+TG+AGFIG HL  KL+  GH VIG+D+INDYY  +LK +RL  +G           
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG-----------  50

Query  67   VVESDKHGKKMQFIKLNLEDRDNLPILFKTHSFDMVCNLAAQAGVRYSLENPLAYVDSNV  126
                     +  F K++LE+ D+L+ +F  +  ++V NLAAQAGVRYS+ENP +Y+DSN+
Sbjct  51   -------KENFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNI  103

Query  127  SGFVNLLESMHINGVDKLVYASSSSVYGLNEKIPFDTKDTVDHPISVYAATKKANELMAH  186
             GF+N+LE  +   +++L+YASSSSVYG N   PF T D +DHP+S+YAATKK+NELMAH
Sbjct  104  VGFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAH  163

Query  187  TYSHLYGIKTIGLRFFTVYGPWGRPDMAMFLFTDALLNNRPIKIFNEGKLSRDFTYIDDI  246
            TYSHLY + T GLRFFTVYGPWGRPDMA+F FT A++N+++I ++N+G++ RDFTY+DDI
Sbjct  164  TYSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDI  223

Query  247  VNGVVATLEKDSEQ----------------LYSLYNIGNGTPVKLLDFIDAIEVETREKF  290
            V+++   + K +                   Y +YNIGN +PV+L++F++AIE       
Sbjct  224  VEAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEA  283

Query  291  IREMLPMQPGDVEKTWADTSALEKDFNYKPSTKIQEGVKNFIDWYKLYYKK  341
             ++ + +QPGDV  T A+   L +D+++KP T IQ+GV++F+DWY  YYKK
Sbjct  284  RKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

545) Dred_3026 in NC_009253


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  276 bits (1032),  Expect = 1e-75, Method: Compositional matrix adjust.
 Identities = 178/341 (53%), Positives = 248/341 (73%), Gaps = 25/341 (7%)

Query  15   LITGAAGFIGYFLSKLLLEQGCRVIGVDNINDYYDVNLKYARLKLLKPFEKFISIKGDIS  74
            LITG+AGFIG  L+K L+ QG  VIGVD+INDYY V+LK  RLK +   E+F   K  + 
Sbjct  4    LITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKVKLE  62

Query  75   DKAMIMKIFEEYKPNIVVNLAAQAGVRYSLENPDAYIQSNTIGFYNILEACRYNPVNHLV  134
            +   + K+F + +P++VVNLAAQAGVRYS+ENP +YI+SN +GF NILE  R   +++L+
Sbjct  63   NYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNLI  122

Query  135  YASSSSVYGANKKVPFEETDFVDHPVSLYAATKKSNELMAHTYSHLYKIPATGLRFFTVY  194
            YASSSSVYGAN   PF  +D +DHP+SLYAATKKSNELMAHTYSHLY++P+TGLRFFTVY
Sbjct  123  YASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTVY  182

Query  195  GPMGRPDMAYFGFTDKYFKGEPIRIFNNGDFENDLYRDFTYIDDIVEGVERLLSNAPTDA  254
            GP GRPDMA F FT    ++++I ++N+G    ++ RDFTY+DDIVE++ RL+ ++++  
Sbjct  183  GPWGRPDMALFKFTKAIVNDQAIDVYNHG----NMMRDFTYVDDIVEAISRLVKKPASPN  238

Query  255  --------------IPHRVFNIGNNSPEKLMVFIETLEKALSKTIGREVVFDKIFEPIKA  300
                           P +V+NIGNNSP +LM F+E++E+ L+K   ++      +  +++
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKN------YMDLQP  292

Query  301  GDVPATYASTDLLQEAVGFKPETSIEEGLQRFADWYVEYYK  341
            GDVP TYA+ D L   ++FKPET+I++G+++F DWY+EYYK
Sbjct  293  GDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

546) wcaG in NC_010794


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  276 bits (1031),  Expect = 1e-75, Method: Compositional matrix adjust.
 Identities = 155/330 (47%), Positives = 239/330 (73%), Gaps = 3/330 (0%)

Query  9    KIFISGAAGFLGYSTARRLLELGYKVAGIDNLNPYYSVELKEARLKILQGYSEFIFGKVD  68
            KI+I+G+AGF+G   A++L+  G  V G+D++N YYSV LKE RLK + G  +F F KV 
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKVK  60

Query  69   LLDKKAVEALFFDFEPDCVIHYAAQAGVRYSLVDPYAYAQSNVSGVVPILECCRKKGIGH  128
            L +   +  +F D +P+ V++ AAQAGVRYS+ +P +Y +SN+ G + ILEC R   I +
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  129  FLLASSSSVYGMNRLIPFKVNHPADHPLSIYAATKKAAELIAHSYSHLFAIPVSCLRFFT  188
            ++ ASSSSVYG N   PF  ++  DHPLS+YAATKK+ EL+AH+YSHL+ +P + LRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  189  VYGPWGRPDMAYYKFASSIYRDRPIEVYAEGKLKRDYTYVDDVVEAVIRLIDSPPQPNRG  248
            VYGPWGRPDMA +KF+ +I  D++I+VY +G++ RD+TYVDD+VEA+ RL+  P+ PN+ 
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  249  EGQLEDCLDPSVSTAPFRIHNVGNKQPENILKLVHLIEKYLDKKARIKFLPMPPGDVECT  308
             +  +   DP+ S AP+++ N+GN+ P  ++ +V+ IE+ L+K AR +++ + PGDV  T
Sbjct  241  WSGADP--DPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPET  298

Query  309  YADTTTLEKEIGYSPQTSLEEGIGRFIKWF  338
            YA+   L ++I++ P+T++++G+ +F+ W+
Sbjct  299  YANVDDLFRDIDFKPETTIQDGVNKFVDWY  328

547) HMPREF1038_00405 in NC_018630


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  276 bits (1031),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 178/356 (50%), Positives = 255/356 (72%), Gaps = 31/356 (8%)

Query  6    ILITGVAGFIGSNLVRKLLELEGTMTIIGLDNLNDYYDIALKDYRLLQLNKLIQDYPEKN  65
            ILITG AGFIGS+L +KL+       +IG+D++NDYY ++LK+ RL  + K  +++    
Sbjct  3    ILITGTAGFIGSHLAKKLIK--QGHYVIGVDSINDYYSVSLKEDRLKSIGK--ENFT---  55

Query  66   WIFIKGDIADKMLINKIFKSYHPQIVVNLAAQAGVRYSITNPDVYIESNIVGFHNVLEAC  125
              F K  + +   ++K+F   +P++VVNLAAQAGVRYSI NP  YI+SNIVGF N+LE C
Sbjct  56   --FNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILE-C  112

Query  126  RHSYEIYDGGVEHLVYASSSSVYGGNKKIPFATEDKVDNPISLYAATKKTNELQAYAYSK  185
             + ++I     ++L+YASSSSVYG+N   PF+T D++D+P+SLYAATKK+NEL A +YS 
Sbjct  113  SRHFNI-----QNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSH  167

Query  186  IYNIPSTGLRFFTVYGPAGRPDMAYFGFTDKLRSGSDIEIYNHGNCKRDFTYIDDIVEGI  245
            +YN+P+TGLRFFTVYGP GRPDMA F FT  + ++  I++YNHGN  RDFTY+DDIVE+I
Sbjct  168  LYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAI  227

Query  246  VRVMQ---SAPKKLVGSDNLP---LAPYKVYNIGNSKPENLLDFVDVLQQELIKAGVLPE  299
             R+++   S+ K   G+D  P    APYKVYNIGN+ P  L++FV+ +++ L K      
Sbjct  228  SRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGK------  281

Query  300  NYDFDSHKKLVPMQPGDVPVTYADTSDLERDFGFKPKTSLREGLRKFAEWYKDYYN  355
                +++K+ + +QPGDVP TYA+  DL RD++FKP T++++G+ KF +WY +YY+
Sbjct  282  ----EARKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

548) gla in NC_017591


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  276 bits (1031),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 178/356 (50%), Positives = 255/356 (72%), Gaps = 31/356 (8%)

Query  6    ILITGVAGFIGSNLVRKLLELEGTMTIIGLDNLNDYYDIALKDYRLLQLNKLIQDYPEKN  65
            ILITG AGFIGS+L +KL+       +IG+D++NDYY ++LK+ RL  + K  +++    
Sbjct  3    ILITGTAGFIGSHLAKKLIK--QGHYVIGVDSINDYYSVSLKEDRLKSIGK--ENFT---  55

Query  66   WIFIKGDIADKMLINKIFKSYHPQIVVNLAAQAGVRYSITNPDVYIESNIVGFHNVLEAC  125
              F K  + +   ++K+F   +P++VVNLAAQAGVRYSI NP  YI+SNIVGF N+LE C
Sbjct  56   --FNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILE-C  112

Query  126  RHSYEIYDGGVEHLVYASSSSVYGGNKKIPFATEDKVDNPISLYAATKKTNELQAYAYSK  185
             + ++I     ++L+YASSSSVYG+N   PF+T D++D+P+SLYAATKK+NEL A +YS 
Sbjct  113  SRHFNI-----QNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSH  167

Query  186  IYNIPSTGLRFFTVYGPAGRPDMAYFGFTDKLRSGSDIEIYNHGNCKRDFTYIDDIVEGI  245
            +YN+P+TGLRFFTVYGP GRPDMA F FT  + ++  I++YNHGN  RDFTY+DDIVE+I
Sbjct  168  LYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAI  227

Query  246  VRVMQ---SAPKKLVGSDNLP---LAPYKVYNIGNSKPENLLDFVDVLQQELIKAGVLPE  299
             R+++   S+ K   G+D  P    APYKVYNIGN+ P  L++FV+ +++ L K      
Sbjct  228  SRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGK------  281

Query  300  NYDFDSHKKLVPMQPGDVPVTYADTSDLERDFGFKPKTSLREGLRKFAEWYKDYYN  355
                +++K+ + +QPGDVP TYA+  DL RD++FKP T++++G+ KF +WY +YY+
Sbjct  282  ----EARKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

549) SPP_0392 in NC_012467


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  276 bits (1031),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 178/356 (50%), Positives = 255/356 (72%), Gaps = 31/356 (8%)

Query  6    ILITGVAGFIGSNLVRKLLELEGTMTIIGLDNLNDYYDIALKDYRLLQLNKLIQDYPEKN  65
            ILITG AGFIGS+L +KL+       +IG+D++NDYY ++LK+ RL  + K  +++    
Sbjct  3    ILITGTAGFIGSHLAKKLIK--QGHYVIGVDSINDYYSVSLKEDRLKSIGK--ENFT---  55

Query  66   WIFIKGDIADKMLINKIFKSYHPQIVVNLAAQAGVRYSITNPDVYIESNIVGFHNVLEAC  125
              F K  + +   ++K+F   +P++VVNLAAQAGVRYSI NP  YI+SNIVGF N+LE C
Sbjct  56   --FNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILE-C  112

Query  126  RHSYEIYDGGVEHLVYASSSSVYGGNKKIPFATEDKVDNPISLYAATKKTNELQAYAYSK  185
             + ++I     ++L+YASSSSVYG+N   PF+T D++D+P+SLYAATKK+NEL A +YS 
Sbjct  113  SRHFNI-----QNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSH  167

Query  186  IYNIPSTGLRFFTVYGPAGRPDMAYFGFTDKLRSGSDIEIYNHGNCKRDFTYIDDIVEGI  245
            +YN+P+TGLRFFTVYGP GRPDMA F FT  + ++  I++YNHGN  RDFTY+DDIVE+I
Sbjct  168  LYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAI  227

Query  246  VRVMQ---SAPKKLVGSDNLP---LAPYKVYNIGNSKPENLLDFVDVLQQELIKAGVLPE  299
             R+++   S+ K   G+D  P    APYKVYNIGN+ P  L++FV+ +++ L K      
Sbjct  228  SRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGK------  281

Query  300  NYDFDSHKKLVPMQPGDVPVTYADTSDLERDFGFKPKTSLREGLRKFAEWYKDYYN  355
                +++K+ + +QPGDVP TYA+  DL RD++FKP T++++G+ KF +WY +YY+
Sbjct  282  ----EARKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

550) ELI_1795 in NC_014624


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  276 bits (1034),  Expect = 9e-76, Method: Compositional matrix adjust.
 Identities = 170/346 (50%), Positives = 248/346 (72%), Gaps = 20/346 (5%)

Query  10   TILITGAAGFIGSNLVIELLRTVPSVSIIGIDNMNDYYDVSIKAWRLEQIEALGGSWTFV  69
             ILITG+AGFIGS+L   L++   +  +IG+D++NDYY VS+K  RL  I     + TF 
Sbjct  2    KILITGTAGFIGSHLAKKLIK--QGHYVIGVDSINDYYSVSLKEDRLKSIGK--ENFTFN  57

Query  70   RGNIADKELIVNLFEKYKPEIVVNLAAQAGVRYSITNPDVYIESNLIGFYNILEACRHYP  129
            + ++ + + + ++F   +PE+VVNLAAQAGVRYSI NP  YI+SN++GF NILE  RH+ 
Sbjct  58   KVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFN  117

Query  130  VEHLVYASSSSVYGVNKKVPYSTEDKVDNPVSLYAATKKSNELMAHAYSKLYNIPSTGLR  189
            +++L+YASSSSVYG N   P+ST D++D+P+SLYAATKKSNELMAH+YS LYN+P+TGLR
Sbjct  118  IQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLR  177

Query  190  FFTVYGPAGRPDMAYFSFTNKLRAGETIKIFNYGNCLRDFTYIDDIVEGVKRVIQ--GAP  247
            FFTVYGP GRPDMA F FT+ +  +++I ++N GN +RDFTY+DDIVE++ R+++  ++P
Sbjct  178  FFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASP  237

Query  248  DKK----TGEDGLPIPPYAVYNIGNSKPENLLDFVQILSEELVKAEVLPDDYNFENHKEL  303
            +K       + G + +PY VYNIGN+ P  L++FV+ + + L K          E +K+ 
Sbjct  238  NKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGK----------EARKNY  287

Query  304  VAMQPGDVTVTYADTSELESTFEFKPNTDLRTGLRRFAEWYKVFYK  349
            + +QPGDV  TYA+  +L   ++FKP+T ++ G+ +F +WY  +YK
Sbjct  288  MDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

551) Spiaf_0061 in NC_017098


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  275 bits (1029),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 163/280 (59%), Positives = 216/280 (78%), Gaps = 10/280 (3%)

Query  112  GFRFVRMQLEDAAGLLQLFADEGFDRVCHLAAQAGVRYSLENPQAYISSNIQGFLNILEA  171
             F F +++LE+  +L ++F DE  + V +LAAQAGVRYS+ENP++YI SNI GF+NILE 
Sbjct  53   NFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILEC  112

Query  172  CRQHPVQHLVYASSSSVYGSNEKMPFSTSDNVDHPVSLYAASKKSNELMAHTYSHLYGIP  231
             R+  +Q+L+YASSSSVYG+N   PFSTSDN+DHP+SLYAA+KKSNELMAHTYSHLY +P
Sbjct  113  SRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLP  172

Query  232  ATGLRFFTVYGPWGRPDMAPMLFSDAITAGRAIKVFNNGDMQRDFTYVDDIVAGVVRVLD  291
            +TGLRFFTVYGPWGRPDMA   F+ AI  ++AI V+N+G+M RDFTYVDDIV ++ R++ 
Sbjct  173  TTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVK  232

Query  292  gapgaga----------gsqapHRVYNIGRGAPVKLMEFIAVLERCLGREAQKNYLPMQP  341
             ++++            +S AP +VYNIG  +PV+LMEF+  +E  LG+EA+KNY+ +QP
Sbjct  233  KPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQP  292

Query  342  GDVPATWADVSDLERDHDYRPATTVEDGVASFVAWYREFY  381
            GDVP T A+V DL RD D++P TT++DGV  FV WY E+Y
Sbjct  293  GDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332


 Score = 54.7 bits (188),  Expect = 7e-09, Method: Compositional matrix adjust.
 Identities = 30/53 (57%), Positives = 41/53 (78%), Gaps = 0/53 (0%)

Query  1   MKILVTGASGFIGFHTAVQLLSQGHEVVGLDSNNDYYDVGLKYGRLAELGIDR  53
           MKIL+TG++GFIG H A +L+ QGH V+G+DS NDYY V+LK +RL  +G + 
Sbjct  1   MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKEN  53

552) RC1_0233 in NC_011420


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  275 bits (1029),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 154/336 (46%), Positives = 241/336 (72%), Gaps = 14/336 (4%)

Query  3    MKVLVTGVAGFIGFHLAQALLDRGDTVVGVDNLNDYYSTALKQDRLALLRQREGFHFQHL  62
            MK+L+TG AGFIG HLA+ L+ +G+ V+GVD++NDYYS +LK+DRL  +  +E F F+ +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  63   NIADRDGMaalaaahpdtaaiahlaaQAGVRYSLTDPFAYVESNLMGHVVMLETARRFEG  122
            ++ + D+++ +   +     +   A QAGVRYS+ +P +Y++SN++G + +LE +R+F+ 
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAA-QAGVRYSIENPRTYIDSNIVGFMNILECSRHFN-  117

Query  123  LRHLVYASSSSVYGLSEAHPFSLDDRADRPASLYGATKRADELISHSYSHIHRIPQTGLR  182
            +++L+YASSSSVYG + + PFS  D  D+P SLY+ATK+++EL++H+YSH+  +P TGLR
Sbjct  118  IQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLR  177

Query  183  FFTVYGPWGRPDMALFLFTRAILAGEPIELFNHGRLQRDFTYIDDIIAGVVRALDRP---  239
            FFTVYGPWGRPDMALF FT+AI+ +++I+++NHG + RDFTY+DDI+ ++ R + +P   
Sbjct  178  FFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASP  237

Query  240  --------PPVVEGAVPHRVFNLGNNTPVELERFVAVLEDALGLKARRHLAPMQPGDVLS  291
                    P    +  P +V+N+GNN+PV L  FV  +E+ LG  AR++   +QPGDV  
Sbjct  238  NKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPE  297

Query  292  THADIEESRRVLGFEPSTPIEAGIGRFVDWYRAYYR  327
            T A++++  R ++F P T I+ G+ +FVDWY  YY+
Sbjct  298  TYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

553) lspL in NC_003063


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  274 bits (1026),  Expect = 3e-75, Method: Compositional matrix adjust.
 Identities = 170/331 (52%), Positives = 247/331 (75%), Gaps = 4/331 (1%)

Query  1    MRYLVTGTAGFIGFYVAKRLLDAGHFVTGFDGMTKYYDVSLKEKRHAILARSNGFRAEIG  60
            M+ L+TGTAGFIG  +AK+L+  GH+V G D++  YY VSLKE R   +++ N F  +  
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKEN-FTFNKV  59

Query  61   MLEDTDALKRaaeaaepeiiihlaaQAGVRYSLENPRAYIDSNLIGSFNMLELARSLKVK  120
             LE+ D L +     +PE++++LAAQAGVRYS+ENPR+YIDSN++G  N+LE +R ++++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLMLASTSSIYGANEKIPFAESDKADEPMTLYAATKKSMELMAHSYAHLHKLPTTAFRFF  180
            +L+ AS+SS+YGAN   PF+ SD+ D+P++LYAATKKS ELMAH+Y+HL +LPTT++RFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMAPIKFVDAVSNGQPIDIYGQGNMSRDFTYIDDLVEGIVRLSAVIPSEEN  240
            TVYGPWGRPDMA +KF  A+ N+Q+ID+Y +GNM RDFTY+DD+VE+I RL    P+  N
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVK-KPASPN  238

Query  241  RVTQEGVTDTLSHHAPFRVVNIGGGQPVELMHFVETIEKAVGKPAIRNMLPMQQGDVPRT  300
            +    +  D  S  AP++V NIG   PV LM+FVE+IE+ +GK A +N + +Q GDVP T
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPET  298

Query  301  FAS-PDLLRALTGYVPQTPVEEGIKALVAWY  330
            +A+  DL+R + ++ P+T +++G++ +V WY
Sbjct  299  YANVDDLFRDI-DFKPETTIQDGVNKFVDWY  328

554) FSU_1408 in NC_017448


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  274 bits (1026),  Expect = 4e-75, Method: Compositional matrix adjust.
 Identities = 175/354 (50%), Positives = 255/354 (73%), Gaps = 28/354 (7%)

Query  13   VLVTGAAGFIGCNLCKKLLNDYNCSELVGLDSITDYYDVNIKHERLKEIETLATLTGKKW  72
            +L+TG+AGFIG +L KKL+++ +   ++G+DSI DYY V++K++RLK I         + 
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHY--VIGVDSINDYYSVSLKEDRLKSIGK------ENF  54

Query  73   TFVKANLADKAAIDSLFEKYHFAVVVNLAAQAGVRYSITNPDAYIQSNLIGFYNILEACR  132
            TF K +L +   +  +F   +  VVVNLAAQAGVRYSI NP +YI+SN++GF NILE C 
Sbjct  55   TFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILE-CS  113

Query  133  RGAEKGEVEHLVYASSSSVYGSNKKIPYSTDDKVDNPVSLYAATKKSNELMAHAYSKLYN  192
            R     ++++L+YASSSSVYG+N   P+ST D++D+P+SLYAATKKSNELMAH+YS LYN
Sbjct  114  R---HFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYN  170

Query  193  IPSTGLRFFTVYGPAGRPDMAYFGFTNKLKAGKTIQIFNYGKCKRDFTFVDDIVEGVVRV  252
            +P+TGLRFFTVYGP GRPDMA F FT+ +  +++I+++N G+  RDFT+VDDIVE++ R+
Sbjct  171  LPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRL  230

Query  253  MQH--APEKQ----NGEDGLPLPPYKVYNIGNNHPENLLDFVTILQEELVRAKVLPADYD  306
            ++   +P+K+    + + G + +PYKVYNIGNN P  L++FV  +++ L +         
Sbjct  231  VKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGK---------  281

Query  307  FEAHKELVPMQPGDVPVTYADTTALEQDFGFKPATPLREGLRKFAEWYAEWYGK  360
             EA+K+ + +QPGDVP TYA+   L +D++FKP T +++G+ KF +WY E Y K
Sbjct  282  -EARKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

555) Fisuc_0962 in NC_013410


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  274 bits (1026),  Expect = 4e-75, Method: Compositional matrix adjust.
 Identities = 175/354 (50%), Positives = 255/354 (73%), Gaps = 28/354 (7%)

Query  13   VLVTGAAGFIGCNLCKKLLNDYNCSELVGLDSITDYYDVNIKHERLKEIETLATLTGKKW  72
            +L+TG+AGFIG +L KKL+++ +   ++G+DSI DYY V++K++RLK I         + 
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHY--VIGVDSINDYYSVSLKEDRLKSIGK------ENF  54

Query  73   TFVKANLADKAAIDSLFEKYHFAVVVNLAAQAGVRYSITNPDAYIQSNLIGFYNILEACR  132
            TF K +L +   +  +F   +  VVVNLAAQAGVRYSI NP +YI+SN++GF NILE C 
Sbjct  55   TFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILE-CS  113

Query  133  RGAEKGEVEHLVYASSSSVYGSNKKIPYSTDDKVDNPVSLYAATKKSNELMAHAYSKLYN  192
            R     ++++L+YASSSSVYG+N   P+ST D++D+P+SLYAATKKSNELMAH+YS LYN
Sbjct  114  R---HFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYN  170

Query  193  IPSTGLRFFTVYGPAGRPDMAYFGFTNKLKAGKTIQIFNYGKCKRDFTFVDDIVEGVVRV  252
            +P+TGLRFFTVYGP GRPDMA F FT+ +  +++I+++N G+  RDFT+VDDIVE++ R+
Sbjct  171  LPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRL  230

Query  253  MQH--APEKQ----NGEDGLPLPPYKVYNIGNNHPENLLDFVTILQEELVRAKVLPADYD  306
            ++   +P+K+    + + G + +PYKVYNIGNN P  L++FV  +++ L +         
Sbjct  231  VKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGK---------  281

Query  307  FEAHKELVPMQPGDVPVTYADTTALEQDFGFKPATPLREGLRKFAEWYAEWYGK  360
             EA+K+ + +QPGDVP TYA+   L +D++FKP T +++G+ KF +WY E Y K
Sbjct  282  -EARKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

556) Astex_1266 in NC_014816


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  274 bits (1024),  Expect = 5e-75, Method: Compositional matrix adjust.
 Identities = 161/333 (49%), Positives = 235/333 (71%), Gaps = 2/333 (0%)

Query  1    MRVFITGTAGFIGFHLAQRLLTEGHTIHGYDGMTEYYDVRLKRARVERLKSAPQYTHTEA  60
            M+++ITGTAGFIG HLA++L+ +GH + G D++ +YY V LK  R+  + +  ++T    
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  61   MLENMDALMTAAEACQPEIIIHLAAQAGVRYSLEQPRTYVNTNVIGSFNILEVARLLKPQ  120
             LEN D L       QPE++++LAAQAGVRYS+E+PRTY+++N++G  NILE +R ++ Q
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLLLASTSSVYGANEKVPFEEVDKTDEPMTLYAATKKSMEVMAHSYAHLWKIPTTAFRFF  180
            +L+ AS+SSVYGAN   PF   D+ D+P++LYAATKKS E+MAH+Y+HL ++PTT++RFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPYGRPDMALFKFVNAADRNEAIDVYGMGQHARDFTYIDDLVEAIVRLIPVAPSEGN  240
            TVYGP GRPDMALFKF +A   ++AIDVY  G+  RDFTY+DD+VEAI RL+   P+  N
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVK-KPASPN  238

Query  241  RVPDDQAHDTLSKLGPFRVVNLGGGQPVSLLSFIDTIEEALQTPLKRNMLPMQKGDVPRT  300
            +   +   D  S  +P++V N+G   PV L+ F+++IE+ L    ++N + +Q GDVP T
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPET  298

Query  301  YASTRLLQALTGFLPRIGLKDGVTRFVNWFRAY  333
            YA+   L    +F P   ++DGV +FV+W+  Y
Sbjct  299  YANVDDLFRDIDFKPETTIQDGVNKFVDWYLEY  331

557) ELI_13270 in NC_007722


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  274 bits (1025),  Expect = 5e-75, Method: Compositional matrix adjust.
 Identities = 155/333 (47%), Positives = 238/333 (72%), Gaps = 8/333 (2%)

Query  32   RILVTGAAGFIGAALCVRLASEGHRVFGIDNLNSYYDPQLKRDRLSEIEAIAGEAFTFSQ  91
            +IL+TG+AGFIG+ L  +L  +GH V+G+D++N YY   LK DRL    +I+ E FTF++
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLK---SIGKENFTFNK  58

Query  92   CDFADRASFANCLADLDISRIAHLGAQPGVRYSLENPHAYIEANIVGHLNMLEFARERQV  151
              + +   +++ + D +   + +L+AQ+GVRYS+ENP++YI++NIVG +N+LE +R+ ++
Sbjct  59   VKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNI  118

Query  152  EHLVYASSSSVYGGNEKVPFSVDDRVDHPFSLYAATKKADELMSETYAHLYRIPQTGLRF  211
            ++L+YASSSSVYG+N   PFS  D +DHP+SLYAATKK++ELM++TY+HLY +P TGLRF
Sbjct  119  QNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRF  178

Query  212  FTVYGPWGRPDMMPWIFTAKILRGEPIPVFNHGKMQRDFTFIDDIVSGIVACLGSPPA--  269
            FTVYGPWGRPDM    FT  I+ +++I V+NHG+M RDFT++DDIV +I   +  P++  
Sbjct  179  FTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPN  238

Query  270  ---DDGTLKPGGSTKPHAIYNIGNNRPEQLLDVIAIIERACGRKAEIEMLPMQKGDVPRT  326
                ++   PG+S  P  +YNIGNN P +L++ +  IE   G+ A  + + +Q GDVP T
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPET  298

Query  327  YADIEAMERDHGYSPTTPVDVGFPRFVEWFKSY  359
            YA+++ + RD ++ P T ++ G  +FV+W+  Y
Sbjct  299  YANVDDLFRDIDFKPETTIQDGVNKFVDWYLEY  331

558) STP_0894 in NC_015558


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  273 bits (1020),  Expect = 1e-74, Method: Compositional matrix adjust.
 Identities = 171/351 (49%), Positives = 251/351 (72%), Gaps = 28/351 (7%)

Query  8    TILVTGAAGFIGSNLVLELMNDNSVEHIIGLDNMNDYYDVSLKDFRLEQIENLEKNSTTK  67
             IL+TG+AGFIGS+L   L+++   + +IG+D++NDYY VSLK+ RL  I      +  +
Sbjct  2    KILITGTAGFIGSHLAKKLIKQG--HYVIGVDSINDYYSVSLKEDRLKSI------GKEN  53

Query  68   WTFIKGSIADRDLVESIFKTYKPEIVVNLAAQAGVRYSITNPDVYIESNIIGFYNILEAC  127
             TF K  + + D +  +F   +PE+VVNLAAQAGVRYSI NP  YI+SNI+GF NILE  
Sbjct  54   FTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECS  113

Query  128  RNYPVEHLVYASSSSVYGSNAKIPYSTEDKADSPVSLYAATKKSNELLAHSYSKLYNIPS  187
            R++ +++L+YASSSSVYG+N+  P+ST D+ D P+SLYAATKKSNEL+AH+YS LYN+P+
Sbjct  114  RHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPT  173

Query  188  TGLRFFTVYGPAGRPDMAYFGFTNKLINGETIEIFNYGNCKRDFTYIDDIVKGI-KLV--  244
            TGLRFFTVYGP GRPDMA F FT+ ++N+++I+++N GN  RDFTY+DDIV +I +LV  
Sbjct  174  TGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKK  233

Query  245  -----MAWPPSQINGEDGLPIPPYSVYNIGNSHPENLLEFVTILQEELISAGVLPANFDF  299
                   W+ +  + + G + +PY VYNIGN+ P  L+EFV  +++ L            
Sbjct  234  PASPNKEWSGA--DPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGK----------  281

Query  300  EGHKKLVAMQPGDVAVTYADTSALQKDFGYKPNTSLREGLRNFAKWYFKFY  350
            E++K+ + +QPGDV+ TYA+   L +D+++KP+T++++G+ +F  WY+ +Y
Sbjct  282  EARKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

559) amb2159 in NC_007626


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  273 bits (1023),  Expect = 6e-75, Method: Compositional matrix adjust.
 Identities = 161/337 (48%), Positives = 240/337 (72%), Gaps = 16/337 (4%)

Query  1    MTILVTGAAGFIGYHTSLRLLARGERVLGVDCLSPYYDVRLKQTRLEHLRKHEGFSFVQA  60
            M IL+TG+AGFIG H + +L+ +G+ V+GVD ++ YY V LK+ RL  + K E F+F + 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DIADRAAMQQV-ATSNPEVTDYINLAAQAGVRHSLTAPFDYTHSNIEGHLVMLEMARANP  119
             + +   + +V    +PEV   +NLAAQAGVR S+  P  Y +SNI G + +LE +R + 
Sbjct  60   KLENYDDLSKVFVDEQPEVV--VNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSR-HF  116

Query  120  KCRHFVYASSSSVYGANTKLPFSVEDRVDTPISLYAASKRSGELMSHSYSHLFRVPTTGL  179
            + ++++YASSSSVYGANT  PFS  D +D P+SLYAA+K+S ELM+H+YSHL+ +PTTGL
Sbjct  117  NIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGL  176

Query  180  RFFTVYGPWGRPDMAAYLFADAIIAGQPIKVFNNGDMRRDFTYIDDIVSGVVGVLDNPPA  239
            RFFTVYGPWGRPDMA + F+ AI+ +Q+I V+N+G+M RDFTY+DDIV ++  ++ +P++
Sbjct  177  RFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPAS  236

Query  240  DD----GKAP-------PYRLYNIGNNNSEKLMDFIGLVESSLGRKATYDFHPMQPGDVK  288
             +    G  P       PY++YNIGNN++ +LM+F+  +E+ LG+ A  ++  +QPGDV 
Sbjct  237  PNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVP  296

Query  289  ETYADISAIQRDVGFAPATPISVGVPRFIEWYKQYHR  325
            ETYA++  + RD++F P T I  GV +F++WY +Y +
Sbjct  297  ETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

560) bpr_I0517 in NC_014387


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  272 bits (1018),  Expect = 2e-74, Method: Compositional matrix adjust.
 Identities = 177/377 (47%), Positives = 254/377 (68%), Gaps = 58/377 (15%)

Query  11   KRVIVTGAAGFIGSNLCMELIK--RYSDIQILGIDNVNDYYDVGIKKDRLKRIAEILGDK  68
             ++++TG+AGFIGS+L   LIK  +Y    ++G+D++NDYY V++K DRLK         
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHY----VIGVDSINDYYSVSLKEDRLK---------  47

Query  69   VGTAGEYGVSETIGDSRFVFIKGNIADRAVIDKAFDEFKPEVVVNLAAQAGVRYSIENPD  128
                       +IG   F F K ++ +   + K F + +PEVVVNLAAQAGVRYSIENP 
Sbjct  48   -----------SIGKENFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPR  96

Query  129  AYIEANLIGFYNILEACRHSYDSQKASDDYKGVEHLVYASSSSVYGSNKKIPYSTDDKVD  188
            +YI++N++GF NILE C + ++          +++L+YASSSSVYG+N   P+ST D++D
Sbjct  97   TYIDSNIVGFMNILE-CSRHFN----------IQNLIYASSSSVYGANTSKPFSTSDNID  145

Query  189  NPVSLYAATKKSNELLAHAYTKLYGIPSTGLRFFTVYGPAGRPDMAYFGFTNKLVKGETI  248
            +P+SLYAATKKSNEL+AH+Y+ LY +P+TGLRFFTVYGP GRPDMA F FT+ +V++++I
Sbjct  146  HPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAI  205

Query  249  KIFNFGNCKRDFTYVDDIVEGVINVMEKA-----------PDENENGVRYKVYNIGNNDP  297
             ++N GN  RDFTYVDDIVE++  ++ K+           PD   +   YKVYNIGNN P
Sbjct  206  DVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSP  265

Query  298  VNLLDFVDILQQELISAGVLPKDYDFEAHKELVPMQPGDVEVTYADVTPLQQDFGFKPNT  357
            V L++FV+ +++ L            EA+K+ + +QPGDV  TYA+V  L +D++FKP+T
Sbjct  266  VRLMEFVEAIENKLGK----------EARKNYMDLQPGDVPETYANVDDLFRDIDFKPET  315

Query  358  PLREGLRKFAKWYKEYY  374
             +++G+ KF  WY EYY
Sbjct  316  TIQDGVNKFVDWYLEYY  332

561) Hbal_1809 in NC_012982


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  272 bits (1016),  Expect = 2e-74, Method: Compositional matrix adjust.
 Identities = 151/329 (46%), Positives = 238/329 (73%), Gaps = 12/329 (3%)

Query  1    MTILVTGAAGFIGFHTCKALVARGETVLGLDNVNGYYDVDLKQARLEQLLSQKNFTFVEM  60
            M IL+TG+AGFIG H  K L+ +G+ V+G+D++N+YY V LK+ RL  + ++ NFTF  +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  61   DISDNDALERAVSGQKIHAVLHLAAQAGVRYSIENPKVYADTNLQGFFNVLEYARNSGVA  120
             + + D L +   +++ + V++LAAQAGVRYSIENP+ Y D+N+ GF N+LE +R+  + 
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  NVVYASSSSIYGGNTKMPFAEDDVTDTPVSFYAATKKSNELMAHSYAHLYGISLTGLRFF  180
            N++YASSSS+YG+NT  PF+  D  D P+S+YAATKKSNELMAH+Y+HLY ++ TGLRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGEWGRPDMAYWIFSEKLRRNEPVQIFNNGDMSRDFTYIDDIVTGVIAAIDRPASA--  238
            TVYG WGRPDMA   F+  +  +++++++N+G+M RDFTY+DDIV ++   + +PAS+  
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  239  --LGLD-------VPHRVYNLGNDKPEKLMDLVGCIEKAFGQELIKEFQPMQLGDVERTW  289
               G D        P +VYN+GN+ P +LM++V  IE+ +G+E  K++  +Q GDV  T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  290  ADISRARKELGFNPHTSLEEGIERFASWF  318
            A++    ++++F+P+T++++G+++F  W+
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWY  328

562) CV_0819 in NC_005085


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  271 bits (1015),  Expect = 2e-74, Method: Compositional matrix adjust.
 Identities = 158/332 (48%), Positives = 245/332 (74%), Gaps = 16/332 (4%)

Query  3    KILVTGAAGFIGRAVCEKLLERRDVQVVGIDNLNDYYAVELKHARLATLQGRSNFSFHRQ  62
            KIL+TG+AGFIG  +  KL+ +++  V+G+D++NDYY+V LK+ RL ++ G+ NF+F++ 
Sbjct  2    KILITGTAGFIGSHLAKKLI-KQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  63   DIADWPAMERLFSAEKFDYVIHLAAQAGVRYSLQNPHAYAESNLLGFTNVLEACRRHPVK  122
             + +   + ++F  E+ + V++LAAQAGVRYS++NP++Y +SN++GF N+LE  R+  ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  123  HLVFagsssvygsgsavPFSEDQRADHPVSFYAATKRANELMAASYSHLYRLPTTSLRFF  182
            +L++A+SSSVYG+ ++ PFS  +  DHP+S+YAATK++NELMA +YSHLY LPTT+LRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  183  TVYGPWGRPDMAPWLFTDAILNGRPIKVFNHGKMQRDFTYIDDIVEGVVRVMEHVPSGE-  241
            TVYGPWGRPDMA   FT AI+N+++I V+NHG+M RDFTY+DDIVE++ R++   +S + 
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  242  -------------LPHTIFNIGNHQPVELMTFIQLTEKYCGREAIKEYLPMQDGDVPITY  288
                          P  ++NIGN+ PV LM F++  E+  G+EA K+Y+ +Q GDVP TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  289  AETSRLRDAVGFTPSTSLEVGMARFVEWFRNY  320
            A+   L   ++F P T+++ G+ +FV+W+ +Y
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEY  331

563) Dfer_0063 in NC_013037


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  271 bits (1014),  Expect = 3e-74, Method: Compositional matrix adjust.
 Identities = 171/347 (50%), Positives = 238/347 (69%), Gaps = 30/347 (8%)

Query  1    MKVLVTGSAGFIGFHTVNKLLSEGFDVVGLDNINDYYSPQLKYARLQEAGIEQESVKWYS  60
            MK+L+TG+AGFIG H  +KL+ +G  V+G+D+INDYYS  LK  RL+  G E+       
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKEN-------  53

Query  61   LVQSKLHSAYRFVRMDLEDKQQLFSLFQSEKFDYVINLAAQAGVRYSIENPDVYVQSNVI  120
                     + F ++ LE+ ++L  +F  E+ + V+NLAAQAGVRYSIENP  Y++SN++
Sbjct  54   ---------FTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIV  104

Query  121  GFHYILEACRHFPPKHLVHASSSSVYGANAKIPFSEEDKVDTPVSLYAATKKSNELMAHA  180
            GF  ILE  RHF  ++L+ ASSSSVYGAN+  PFS  D++D P+SLYAATKKSNELMAH+
Sbjct  105  GFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHT  164

Query  181  YSHLYGIPITCLRFFTVYGPWGRPDMAPMLFARAISEGKPIKIFNNGEMERDFTFVGDIV  240
            YSHLY +P T LRFFTVYGPWGRPDMA   F++AI ++++I ++N+G+M RDFT+V+DIV
Sbjct  165  YSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIV  224

Query  241  NGITKTTV---------TGFDETP-----KYRVLNIGNGSPVNLMDFITELEKGLEAEAQ  286
            ++I++            +G D  P      Y+V NIGN SPV LM+F+  +E+ L  EA+
Sbjct  225  EAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEAR  284

Query  287  KDFMPMQPGDVPRTWASQDKLQDIVNYTPEVKLTDGILEFAKWFQSY  333
            K++M +QPGDVP T A+ D L   +++ PE  + DG+  F  W+  Y
Sbjct  285  KNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEY  331

564) BbuZS7_0450 in NC_011728


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  271 bits (1015),  Expect = 3e-74, Method: Compositional matrix adjust.
 Identities = 158/346 (46%), Positives = 251/346 (73%), Gaps = 18/346 (5%)

Query  1    MKIFLTGIAGFIGFHVAKKLVEKGHEVLGIDVLNDYYELKFKHERLEALGFCSKDVKTHK  60
            MKI++TG AGFIG H+AKKL+ +GH V+G+D +NDYY + +K++RL ++G   K+  T +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG---KENFTFN  57

Query  61   IIKSEKYNNLSFAYLDILNKDKLLELFKDHKFTHVCHLAAQAGIRDSLENPDSYVSINIV  120
             +K E+Y++LS              +F D++   V +LAAQAG+R S+ENP +Y+  NIV
Sbjct  58   KVKLENYDDLS-------------KVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIV  104

Query  121  GFFNVLDVCRVYKENIEHFVYASTSSVYGINENMPSSEDSITDHPLNLYAASKKSNEMMA  180
            GF N+L+  R +  NI++++YAS+SSVYG N + P S     DHPL+LYAA+KKSNE+MA
Sbjct  105  GFMNILECSRHF--NIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMA  162

Query  181  HAYSASFNIPTTGLRFFTVYGTYGRPDMALYLFSDGIKNGKAINIFNNGNMARDFTYVDD  240
            H+YS  +N+PTTGLRFFTVYG  GRPDMAL+ F+ +I N++AI+++N+GNM RDFTYVDD
Sbjct  163  HTYSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDD  222

Query  241  IADGVYKVLKNPAKSDCNFDVKNPNSSTSSFPYRIYNIGTGHATKLLDFISELEANFDKK  300
            I +++ +++K+PA ++ +    +P++++S  PY++YNIG   + +L++F+  +E +++K 
Sbjct  223  IVEAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKE  282

Query  301  ALKNYMPMQKADVVESCCDILKLKNDVGYEAKVSIKEGIKEFSQWY  346
            A KNYM +Q +DV E+  ++  L  D+++ +  +I++G++ F +WY
Sbjct  283  ARKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWY  328

565) Rpdx1_4240 in NC_014834


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  271 bits (1013),  Expect = 4e-74, Method: Compositional matrix adjust.
 Identities = 167/332 (51%), Positives = 236/332 (72%), Gaps = 12/332 (3%)

Query  6    VLVTGAAGFIGYHVARELLEAGRSVVGLDSLNHYYDPALKQARLDLLTPYPGFSFVRGDL  65
            +L+TG+AGFIG H+A+ L+  G+ V+G+DS+N+YY  +LK+ RL  +     F+F +  L
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKVKL  61

Query  66   ADRSATAELFATRRFPVVIHLAAQAGVRHSLSHPHDYADSNLEGFLNVLEGCRHHGCEHL  125
             +    + +F   +  VV++LAAQAGVR S+ +P+ Y DSN+ GF+N+LE  RH   ++L
Sbjct  62   ENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNL  121

Query  126  IYASSSSVYGANTKLPFSVDDPTDHPISLYAATKKANELMAHCYSHLYRLPTTGLRFFTI  185
            IYASSSSVYGANT  PFS  D  DHP+SLYAATKK+NELMAH YSHLY LPTTGLRFFT+
Sbjct  122  IYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTV  181

Query  186  YGPWYRPDMALYLFAKAITEGRPIKLFNHGQMrrdftyvddvtrvvtrLIDLVPTGRD--  243
            YGPW RPDMAL+ F+KAI ++++I ++NHG+M RDFTYVDD+   ++RL+   ++     
Sbjct  182  YGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEW  241

Query  244  ---------GHAPARVYNVGNHSPEELMHVVALLERALGRPAVREMLPMQPGDVPATFAD  294
                     + AP +VYN+GN+SP  LM+ V  +E  LG+ A ++ + +QPGDVP T+A+
Sbjct  242  SGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYAN  301

Query  295  VEALVRDVGFRPSTPIEDGIGAFVAWFRRYHQ  326
            V+ L RD++F+P T I+DG+  FV W+  Y +
Sbjct  302  VDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

566) BH0444 in NC_010673


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  271 bits (1012),  Expect = 4e-74, Method: Compositional matrix adjust.
 Identities = 165/346 (48%), Positives = 258/346 (75%), Gaps = 18/346 (5%)

Query  1    MRVFLTGIAGFIGFHVAKRLADNGHEVLGVDVINDYYEPNLKYERLKALGFDRENICGKK  60
            M++++TG AGFIG H+AK+L  +GH V+GVD INDYY  +LK +RLK++G  +EN+  +K
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG--KENFTFNK  58

Query  61   ILQSNKYDNLSFICLDILNKEQVLSLFSRYKFTHVCHLAAQAGIRDSIENPDSYISVNIV  120
            + + ++YD+LS + +D  ++ +V           V +LAAQAG+R SIENP +YI  NIV
Sbjct  59   V-KLENYDDLSKVFVD--EQPEV-----------VVNLAAQAGVRYSIENPRTYIDSNIV  104

Query  121  GFFNVLDACRIHKSHIEHFVYASTSAVYGINEKMPSDEDSITDHPLNLYAASKKSNEVIA  180
            GF N+L+ C  H  +I++++YAS+S+VYG N   P       DHPL+LYAA+KKSNE++A
Sbjct  105  GFMNILE-CSRH-FNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMA  162

Query  181  HAYSSSFNIPTTGLRFFTVYGPYGRPDMALYLFADGITKQTPINVFNNGNMARDFTYvdd  240
            H+YS  +N+PTTGLRFFTVYGP GRPDMAL+ F+ +I ++ +I+V+N+GNM RDFTYVDD
Sbjct  163  HTYSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDD  222

Query  241  vvdGVYSVLKKPAESDRNFNTQNPNSSSSLAPYKIYNIGTGHAIKLMEFIDELETNLGNK  300
            +V+++  ++KKPA ++++ +  +P+++SS APYK+YNIG   +++LMEF++ +E +LG+ 
Sbjct  223  IVEAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKE  282

Query  301  ACKNFLPMQKADVVESCCSISKLKNDFAYEALTSIKEGIKKFAHWY  346
            A KN++ +Q +DV E+  ++  L  D+ + + T+I++G++KF +WY
Sbjct  283  ARKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWY  328

567) AGROH133_13009 in NC_015508


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  270 bits (1010),  Expect = 6e-74, Method: Compositional matrix adjust.
 Identities = 166/331 (51%), Positives = 248/331 (75%), Gaps = 4/331 (1%)

Query  1    MRYLVTGTAGFIGFYVAKRLLDAGHFVTGFDGMTKYYDVSLKEKRHAILSRSNGFRAEIG  60
            M+ L+TGTAGFIG  +AK+L+  GH+V G D++  YY VSLKE R   +++ N F  +  
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKEN-FTFNKV  59

Query  61   MLEDTDALKRaaeaaepeiiihlaaQAGVRYSLENPRAYIDSNLIGSWNMLELAKNLRVK  120
             LE+ D L +     +PE++++LAAQAGVRYS+ENPR+YIDSN++G  N+LE ++++ ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLMLASTSSIYGANEKIPFAESDKADEPMTLYAATKKSMELMAHSYAHLHKLPTTAFRFF  180
            +L+ AS+SS+YGAN   PF+ SD+ D+P++LYAATKKS ELMAH+Y+HL +LPTT++RFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMAPIKFVDAISNGEPIDIYGQGNMSRDFTYIDDLVEGIVRLSQVIPSEEN  240
            TVYGPWGRPDMA +KF  AI N+++ID+Y +GNM RDFTY+DD+VE+I RL +  P+  N
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVK-KPASPN  238

Query  241  RVTEEGVTDTLSHHAPFRIVNIGGGQPVELMHFVETVEKAVGRPAIRNMLPMQQGDVPRT  300
            +    +  D  S  AP+++ NIG   PV LM+FVE++E+ +G+ A +N + +Q GDVP T
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPET  298

Query  301  FAS-PDLLRALTGYVPQTPVEEGIKALVAWY  330
            +A+  DL+R + ++ P+T +++G++ +V WY
Sbjct  299  YANVDDLFRDI-DFKPETTIQDGVNKFVDWY  328

568) BB_0444 in NC_001318


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  270 bits (1011),  Expect = 6e-74, Method: Compositional matrix adjust.
 Identities = 157/346 (46%), Positives = 251/346 (73%), Gaps = 18/346 (5%)

Query  1    MKIFLTGIAGFIGFHVAKKLVEKGHEVLGIDVLNDYYELKFKHERLEALGFCSKDVKTHK  60
            MKI++TG AGFIG H+AKKL+ +GH V+G+D +NDYY + +K++RL ++G   K+  T +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG---KENFTFN  57

Query  61   IIKSEKYNNLSFAYLDILNKDKLLELFKDHKFTHVCHLAAQAGIRDSLENPDSYVSINIV  120
             +K E+Y++LS              +F D++   V +LAAQAG+R S+ENP +Y+  NIV
Sbjct  58   KVKLENYDDLS-------------KVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIV  104

Query  121  GFFNVLDVCRVYKENIEHFVYASTSSVYGINENMPSSEDSITDHPLNLYAASKKSNEMMA  180
            GF N+L+  R +  NI++++YAS+SSVYG N + P S     DHPL+LYAA+KKSNE+MA
Sbjct  105  GFMNILECSRHF--NIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMA  162

Query  181  HAYSASFNIPTTGLRFFTVYGTYGRPDMALYLFSDGIKNGKAINIFNNGNMARDFTYVGD  240
            H+YS  +N+PTTGLRFFTVYG  GRPDMAL+ F+ +I N++AI+++N+GNM RDFTYV+D
Sbjct  163  HTYSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDD  222

Query  241  IADGVYKVLKNPAKSDCNFDVKNPNSSTSSFPYRIYNIGTGHATKLLDFISELEANFDKK  300
            I +++ +++K+PA ++ +    +P++++S  PY++YNIG   + +L++F+  +E +++K 
Sbjct  223  IVEAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKE  282

Query  301  ALKNYMPMQKADVVESCCDILKLKNDVGYEAKVSIKEGIKEFSQWY  346
            A KNYM +Q +DV E+  ++  L  D+++ +  +I++G++ F +WY
Sbjct  283  ARKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWY  328

569) BbuJD1_0444 in NC_017403


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  270 bits (1011),  Expect = 6e-74, Method: Compositional matrix adjust.
 Identities = 157/346 (46%), Positives = 251/346 (73%), Gaps = 18/346 (5%)

Query  1    MKIFLTGIAGFIGFHVAKKLVEKGHEVLGIDVLNDYYELKFKHERLEALGFCSKDVKTHK  60
            MKI++TG AGFIG H+AKKL+ +GH V+G+D +NDYY + +K++RL ++G   K+  T +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG---KENFTFN  57

Query  61   IIKSEKYNNLSFAYLDILNKDKLLELFKDHKFTHVCHLAAQAGIRDSLENPDSYVSINIV  120
             +K E+Y++LS              +F D++   V +LAAQAG+R S+ENP +Y+  NIV
Sbjct  58   KVKLENYDDLS-------------KVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIV  104

Query  121  GFFNVLDVCRVYKENIEHFVYASTSSVYGINENMPSSEDSITDHPLNLYAASKKSNEMMA  180
            GF N+L+  R +  NI++++YAS+SSVYG N + P S     DHPL+LYAA+KKSNE+MA
Sbjct  105  GFMNILECSRHF--NIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMA  162

Query  181  HAYSASFNIPTTGLRFFTVYGTYGRPDMALYLFSDGIKNGKAINIFNNGNMARDFTYVGD  240
            H+YS  +N+PTTGLRFFTVYG  GRPDMAL+ F+ +I N++AI+++N+GNM RDFTYV+D
Sbjct  163  HTYSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDD  222

Query  241  IADGVYKVLKNPAKSDCNFDVKNPNSSTSSFPYRIYNIGTGHATKLLDFISELEANFDKK  300
            I +++ +++K+PA ++ +    +P++++S  PY++YNIG   + +L++F+  +E +++K 
Sbjct  223  IVEAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKE  282

Query  301  ALKNYMPMQKADVVESCCDILKLKNDVGYEAKVSIKEGIKEFSQWY  346
            A KNYM +Q +DV E+  ++  L  D+++ +  +I++G++ F +WY
Sbjct  283  ARKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWY  328

570) BbuN40_0444 in NC_017418


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  270 bits (1011),  Expect = 6e-74, Method: Compositional matrix adjust.
 Identities = 157/346 (46%), Positives = 251/346 (73%), Gaps = 18/346 (5%)

Query  1    MKIFLTGIAGFIGFHVAKKLVEKGHEVLGIDVLNDYYELKFKHERLEALGFCSKDVKTHK  60
            MKI++TG AGFIG H+AKKL+ +GH V+G+D +NDYY + +K++RL ++G   K+  T +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG---KENFTFN  57

Query  61   IIKSEKYNNLSFAYLDILNKDKLLELFKDHKFTHVCHLAAQAGIRDSLENPDSYVSINIV  120
             +K E+Y++LS              +F D++   V +LAAQAG+R S+ENP +Y+  NIV
Sbjct  58   KVKLENYDDLS-------------KVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIV  104

Query  121  GFFNVLDVCRVYKENIEHFVYASTSSVYGINENMPSSEDSITDHPLNLYAASKKSNEMMA  180
            GF N+L+  R +  NI++++YAS+SSVYG N + P S     DHPL+LYAA+KKSNE+MA
Sbjct  105  GFMNILECSRHF--NIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMA  162

Query  181  HAYSASFNIPTTGLRFFTVYGTYGRPDMALYLFSDGIKNGKAINIFNNGNMARDFTYVGD  240
            H+YS  +N+PTTGLRFFTVYG  GRPDMAL+ F+ +I N++AI+++N+GNM RDFTYV+D
Sbjct  163  HTYSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDD  222

Query  241  IADGVYKVLKNPAKSDCNFDVKNPNSSTSSFPYRIYNIGTGHATKLLDFISELEANFDKK  300
            I +++ +++K+PA ++ +    +P++++S  PY++YNIG   + +L++F+  +E +++K 
Sbjct  223  IVEAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKE  282

Query  301  ALKNYMPMQKADVVESCCDILKLKNDVGYEAKVSIKEGIKEFSQWY  346
            A KNYM +Q +DV E+  ++  L  D+++ +  +I++G++ F +WY
Sbjct  283  ARKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWY  328

571) TM1040_3776 in NC_008042


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  270 bits (1009),  Expect = 7e-74, Method: Compositional matrix adjust.
 Identities = 160/330 (49%), Positives = 234/330 (71%), Gaps = 4/330 (1%)

Query  5    LITGTAGFIGYHLATYLLASGWQVVGLDCLSPYYDIALKRRRHAMLEVNDNFIPVIGKLE  64
            LITGTAGFIG HLA  L+  G  V+G+D ++ YY ++LK  R   +  ++NF     KLE
Sbjct  4    LITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG-KENFTFNKVKLE  62

Query  65   DPGRLMGLLADHKPNAVIHLAAQAGVRHSIDAPRDYLEANLIGTFEVLEAARAHPPEHIM  124
            + + L  ++ D++P+ V++LAAQAGVR SI+ PR Y+++N++G  ++LE +R    ++++
Sbjct  63   NYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNLI  122

Query  125  IASTSSAYGANTNIPFDEHQKADHQMSFYAATKKAGETMAHSYAHLYGLPTTMFRFFTVY  184
             AS+SS YGANT+ PF   ++ DH +S+YAATKK+ E MAH+Y+HLY LPTT +RFFTVY
Sbjct  123  YASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTVY  182

Query  185  GPWGRPDMALFKFTKAIEAGEAIDVYNHGRMSRDFTYIDDLVAGITGLIEAVPGDT---P  241
            GPWGRPDMALFKFTKAI  ++AIDVYNHG M RDFTY+DD+V +I+ L+   ++     +
Sbjct  183  GPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEWS  242

Query  242  VSTQDTLSPVAPFRIVNIGASKPTPLMDYIaaletalettaRKNLMEMQPGDVPATWADT  301
             +  D  S+ AP+++ NIG + P  LM+++ A+E  L   ARKN M++QPGDVP T A+ 
Sbjct  243  GADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYANV  302

Query  302  TLLSQLTGYEPQVSVEEGVARFVAWYRGYY  331
              L +  ++ P+ ++++GV +FV WY  YY
Sbjct  303  DDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

572) Cthe_1361 in NC_009012


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  269 bits (1007),  Expect = 1e-73, Method: Compositional matrix adjust.
 Identities = 174/347 (51%), Positives = 251/347 (73%), Gaps = 26/347 (7%)

Query  11   IFITGVAGFIGAYFAKQLLdtvdgitiigidNMNDYYDVKLKESRLESLCNNSKFIFVKG  70
            I+ITG AGFIG+ +AK+L+   + +  ++  ++NDYY V LKE RL S+  + +F F K 
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYVIGVD--SINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  71   NIADKELINNIFNTYHPQIVVNLAAQAGVRYSITNPDAYIESNIIGFYNILEACRHSYDE  130
            ++ + + ++++F   +P++VVNLAAQAGVRYSI NP +YI+SNI+GF NILE C + ++ 
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILE-CSRHFN-  117

Query  131  GKVPVEHLVYASSSSVYGSNKKVPYSTEDKVDYPVSLYAATKKSNELMAYTYSKLYNIPS  190
                +++L+YASSSSVYG+N   P+ST D++D P+SLYAATKKSNELMA TYS LYN+P+
Sbjct  118  ----IQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPT  173

Query  191  TGLRFFTVYGPAGRPDMAYFSFTNKLAQGKKIQIFNYGDMYRDFTYIDDIVKGIVLVLQK  250
            TGLRFFTVYGP GRPDMA F FT+ + +++ I+++N G+M RDFTY+DDIV +I  +++K
Sbjct  174  TGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKK  233

Query  251  V-----------PEPMEDGVRYKIYNIGNNKPENLMHFVEVLEKCLMEEGIITKPGEKEL  299
                        P+P      YK+YNIGNN P  LM+FVE +E+ L       K + K+ 
Sbjct  234  PASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKL------GKEARKNY  287

Query  300  LPMQPGDVYQTYADVDDLVRDFGFKPSTSLEEGLSKFAKWYREFYMQ  346
            + +QPGDV +TYA+VDDL RD++FKP T++++G++KF  WY E+Y +
Sbjct  288  MDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

573) Clo1313_0892 in NC_017304


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  269 bits (1007),  Expect = 1e-73, Method: Compositional matrix adjust.
 Identities = 174/347 (51%), Positives = 251/347 (73%), Gaps = 26/347 (7%)

Query  11   IFITGVAGFIGAYFAKQLLdtvdgitiigidNMNDYYDVKLKESRLESLCNNSKFIFVKG  70
            I+ITG AGFIG+ +AK+L+   + +  ++  ++NDYY V LKE RL S+  + +F F K 
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYVIGVD--SINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  71   NIADKELINNIFNTYHPQIVVNLAAQAGVRYSITNPDAYIESNIIGFYNILEACRHSYDE  130
            ++ + + ++++F   +P++VVNLAAQAGVRYSI NP +YI+SNI+GF NILE C + ++ 
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILE-CSRHFN-  117

Query  131  GKVPVEHLVYASSSSVYGSNKKVPYSTEDKVDYPVSLYAATKKSNELMAYTYSKLYNIPS  190
                +++L+YASSSSVYG+N   P+ST D++D P+SLYAATKKSNELMA TYS LYN+P+
Sbjct  118  ----IQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPT  173

Query  191  TGLRFFTVYGPAGRPDMAYFSFTNKLAQGKKIQIFNYGDMYRDFTYIDDIVKGIVLVLQK  250
            TGLRFFTVYGP GRPDMA F FT+ + +++ I+++N G+M RDFTY+DDIV +I  +++K
Sbjct  174  TGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKK  233

Query  251  V-----------PEPMEDGVRYKIYNIGNNKPENLMHFVEVLEKCLMEEGIITKPGEKEL  299
                        P+P      YK+YNIGNN P  LM+FVE +E+ L       K + K+ 
Sbjct  234  PASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKL------GKEARKNY  287

Query  300  LPMQPGDVYQTYADVDDLVRDFGFKPSTSLEEGLSKFAKWYREFYMQ  346
            + +QPGDV +TYA+VDDL RD++FKP T++++G++KF  WY E+Y +
Sbjct  288  MDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

574) BbiDN127_0446 in NC_015921


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  268 bits (1003),  Expect = 2e-73, Method: Compositional matrix adjust.
 Identities = 155/346 (45%), Positives = 249/346 (72%), Gaps = 18/346 (5%)

Query  1    MKIFLTGIAGFIGFHVAKKLVEEGHEVLGIDVLNDYYELKFKHERLEALGFCSEDVKTHK  60
            MKI++TG AGFIG H+AKKL+ +GH V+G+D +NDYY + +K++RL ++G   E+   +K
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG--KENFTFNK  58

Query  61   IIKSKKYNNLSFLYLDILNKDKLLELFKDHEFTHVCHLAAQAGIRDSLENPDSYVSINIV  120
            + K  +Y++LS              +F D++   V +LAAQAG+R S+ENP +Y+  NIV
Sbjct  59   V-KLENYDDLS-------------KVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIV  104

Query  121  GFFNVLDVCRVYKEKIEHFVYASTSSVYGINENMPSSEDSITDHPLNLYAASKKSNEMMA  180
            GF N+L+  R ++  I++++YAS+SSVYG N + P S     DHPL+LYAA+KKSNE+MA
Sbjct  105  GFMNILECSRHFN--IQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMA  162

Query  181  HAYSASFNIPTTGLRFFTVYGTYGRPDMALYLFSDGIKNGKSINIFNNGNMARDFTYVSD  240
            H+YS  +N+PTTGLRFFTVYG  GRPDMAL+ F+ +I N+++I+++N+GNM RDFTYV D
Sbjct  163  HTYSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDD  222

Query  241  IAEGVYKVLKNPAKSDCNFDVKNPNSSTSSFPYRIYNIGTGHATKLLDFISELEANFDKK  300
            I E++ +++K+PA ++ +    +P++++S  PY++YNIG   + +L++F+  +E +++K 
Sbjct  223  IVEAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKE  282

Query  301  ALKNYMPMQKADVVESCCDILKLKNDVGYEAKISIKEGIKEFSQWY  346
            A KNYM +Q +DV E+  ++  L  D+++ +  +I++G++ F +WY
Sbjct  283  ARKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWY  328

575) Q7M_449 in NC_017808


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  268 bits (1002),  Expect = 3e-73, Method: Compositional matrix adjust.
 Identities = 159/346 (46%), Positives = 247/346 (72%), Gaps = 18/346 (5%)

Query  1    MRVLLTGIAGFIGFHVAKKLADDGHEVLGIDILNNYYDPSLKYERLEILGFNSENIDSKK  60
            M++L+TG AGFIG H+AKKL  +GH V+G+D +N+YY  SLK +RL  +G          
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG----------  50

Query  61   VVNSYKYNNLSFVNLDILNKERVLSLFNNYKFTHICHLAAQAGIRDSIENPDSYIAINIV  120
              +++ +N++ + N D L+K     +F + +   + +LAAQAG+R SIENP +YI  NIV
Sbjct  51   -KENFTFNKVKLENYDDLSK-----VFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIV  104

Query  121  GFFNILDACRIYKDSIEHFVYASTSAVYGLNEKMPSSEDSITDHPLNLYAASKKSNEVIA  180
            GF NIL+  R +  +I++++YAS+S+VYG N   P S     DHPL+LYAA+KKSNE++A
Sbjct  105  GFMNILECSRHF--NIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMA  162

Query  181  HAYSSSFNIPTTGLRFFTVYGPYGRPDMALYLFADGIMRQSTINVFNNGDMARDFTYVDD  240
            H+YS  +N+PTTGLRFFTVYGP GRPDMAL+ F+ +I+ + +I+V+N+G+M RDFTYVDD
Sbjct  163  HTYSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDD  222

Query  241  VVNGVCNVLKKPARSDSSFDTQNPNSSSSFAPYRIYNVGTGQAVKLMEFineleinlenK  300
            +V+++  ++KKPA ++      +P+++SS+APY++YN+G   +V+LMEF++ +E +L + 
Sbjct  223  IVEAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKE  282

Query  301  ACKNFLPMQKADVVESCCDISKLKNDFAYEALTSIKDGIRKFAIWY  346
            A KN++ +Q +DV E+  ++  L  D+ + + T+I+DG+ KF  WY
Sbjct  283  ARKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWY  328

576) BT0444 in NC_008710


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  268 bits (1002),  Expect = 3e-73, Method: Compositional matrix adjust.
 Identities = 158/346 (46%), Positives = 249/346 (72%), Gaps = 18/346 (5%)

Query  1    MRVFLTGIAGFIGFHVAKRLADNGHEVLGVDVLNDYYEPNLKYERLEVLGFDRKNIGSKK  60
            M++++TG AGFIG H+AK+L  +GH V+GVD +NDYY  +LK +RL  +G  + N+  +K
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG--KENFTFNK  58

Query  61   VIQSNKYNNLSFIYLDILDKDKVLSLFSDYKFTHVCHLAAQAGIRDSIENPDSYISVNIV  120
            V + ++Y++LS +++D  ++  V           V +LAAQAG+R SIENP +YI  NIV
Sbjct  59   V-KLENYDDLSKVFVD--EQPEV-----------VVNLAAQAGVRYSIENPRTYIDSNIV  104

Query  121  GFFNVLDACRIHKSHIEHFVYASTSAVYGINKKMPSDEDSITDHPLNLYAASKKSNEVIA  180
            GF N+L+ C  H  +I++++YAS+S+VYG N   P       DHPL+LYAA+KKSNE++A
Sbjct  105  GFMNILE-CSRH-FNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMA  162

Query  181  HAYSSSFNIPTTGLRFFTVYGPYGRPDMALYLFADGIIKQTPINVFNNGDMARDFTYVDD  240
            H+YS  +N+PTTGLRFFTVYGP GRPDMAL+ F+ +I+++ +I+V+N+G+M RDFTYVDD
Sbjct  163  HTYSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDD  222

Query  241  VADGVYSVLKKPAESDVNFDVQNPNSSSSLAPYKIYNIGTGHATELLEFINELETNLGNK  300
            + +++  ++KKPA ++ +    +P+++SS APYK+YNIG   +  L+EF++ +E +LG+ 
Sbjct  223  IVEAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKE  282

Query  301  ACKNFLPMQKADVVKSCCNISKLKTDFAYESLISIKEGIKKFANWY  346
            A KN++ +Q +DV  +  N+  L  D+ + +  +I++G++KF +WY
Sbjct  283  ARKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWY  328

577) wbnF in NC_003919


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  268 bits (1001),  Expect = 3e-73, Method: Compositional matrix adjust.
 Identities = 150/332 (46%), Positives = 234/332 (71%), Gaps = 15/332 (4%)

Query  1    MTILVTGAAGFIGAYTCRALAARGETVVGLDNYNNYYDPQLKHDRVATLC-PGLDIRTLD  59
            M IL+TG+AGFIG+   + L  +G+ V+G+D+ N+YY   LK+DR+ ++    + +  + 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  60   LTDREGLAALFDEIQPTRVVHLAAQAGVRYSLENPHAYVDSNLVGFVNMLELCRHRGVQH  119
            L + ++L+ +F + QP  VV+LAAQAGVRYS+ENP++Y+DSN+VGF+N+LE  RH  +Q+
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  120  LVYASSSSVYGDSATPPFSEDQRVDQPRSLYAATKAANELMGHTYAQLYGLRATGLRFFT  179
            L+YASSSSVYG +++ PFS  + +D+P SLYAATK +NELM+HTY++LY L +TGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  180  VYGPWGRPDMAPLIFSRAVLAGRPIEVFNHGKMQRDFTFVDDIVAGVLGALDTPSDAP--  237
            VYGPWGRPDMA + F++A++ +++I+V+NHG+M RDFT+VDDIV ++   +  P+ +   
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  238  ------------VPHRVFNLGNHTPVELEYFIDVIAQAAGRPAEKVYRPMQPGDMIRTMA  285
                         P +V+N+GN++PV L  F++ I +  G+ A K Y  +QPGD+  T A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  286  DTQRAQAAFGFDPATPVERGLPQVVEWCRQYF  317
            + +     ++F P T ++ G+ + V+W  +Y+
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

578) XAC29_19825 in NC_020800


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  268 bits (1001),  Expect = 3e-73, Method: Compositional matrix adjust.
 Identities = 150/332 (46%), Positives = 234/332 (71%), Gaps = 15/332 (4%)

Query  1    MTILVTGAAGFIGAYTCRALAARGETVVGLDNYNNYYDPQLKHDRVATLC-PGLDIRTLD  59
            M IL+TG+AGFIG+   + L  +G+ V+G+D+ N+YY   LK+DR+ ++    + +  + 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  60   LTDREGLAALFDEIQPTRVVHLAAQAGVRYSLENPHAYVDSNLVGFVNMLELCRHRGVQH  119
            L + ++L+ +F + QP  VV+LAAQAGVRYS+ENP++Y+DSN+VGF+N+LE  RH  +Q+
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  120  LVYASSSSVYGDSATPPFSEDQRVDQPRSLYAATKAANELMGHTYAQLYGLRATGLRFFT  179
            L+YASSSSVYG +++ PFS  + +D+P SLYAATK +NELM+HTY++LY L +TGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  180  VYGPWGRPDMAPLIFSRAVLAGRPIEVFNHGKMQRDFTFVDDIVAGVLGALDTPSDAP--  237
            VYGPWGRPDMA + F++A++ +++I+V+NHG+M RDFT+VDDIV ++   +  P+ +   
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  238  ------------VPHRVFNLGNHTPVELEYFIDVIAQAAGRPAEKVYRPMQPGDMIRTMA  285
                         P +V+N+GN++PV L  F++ I +  G+ A K Y  +QPGD+  T A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  286  DTQRAQAAFGFDPATPVERGLPQVVEWCRQYF  317
            + +     ++F P T ++ G+ + V+W  +Y+
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

579) wcaG in NC_020815


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  268 bits (1001),  Expect = 3e-73, Method: Compositional matrix adjust.
 Identities = 150/332 (46%), Positives = 234/332 (71%), Gaps = 15/332 (4%)

Query  1    MTILVTGAAGFIGAYTCRALAARGETVVGLDNYNNYYDPQLKHDRVATLC-PGLDIRTLD  59
            M IL+TG+AGFIG+   + L  +G+ V+G+D+ N+YY   LK+DR+ ++    + +  + 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  60   LTDREGLAALFDEIQPTRVVHLAAQAGVRYSLENPHAYVDSNLVGFVNMLELCRHRGVQH  119
            L + ++L+ +F + QP  VV+LAAQAGVRYS+ENP++Y+DSN+VGF+N+LE  RH  +Q+
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  120  LVYASSSSVYGDSATPPFSEDQRVDQPRSLYAATKAANELMGHTYAQLYGLRATGLRFFT  179
            L+YASSSSVYG +++ PFS  + +D+P SLYAATK +NELM+HTY++LY L +TGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  180  VYGPWGRPDMAPLIFSRAVLAGRPIEVFNHGKMQRDFTFVDDIVAGVLGALDTPSDAP--  237
            VYGPWGRPDMA + F++A++ +++I+V+NHG+M RDFT+VDDIV ++   +  P+ +   
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  238  ------------VPHRVFNLGNHTPVELEYFIDVIAQAAGRPAEKVYRPMQPGDMIRTMA  285
                         P +V+N+GN++PV L  F++ I +  G+ A K Y  +QPGD+  T A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  286  DTQRAQAAFGFDPATPVERGLPQVVEWCRQYF  317
            + +     ++F P T ++ G+ + V+W  +Y+
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

580) BDU_442 in NC_011229


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  267 bits (1000),  Expect = 4e-73, Method: Compositional matrix adjust.
 Identities = 163/348 (47%), Positives = 252/348 (73%), Gaps = 22/348 (6%)

Query  1    MRVLLTGIAGFIGFHVAKKLADDGHEVLGIDILNNYYDPSLKYERLEILGFNSENIDNKK  60
            M++L+TG AGFIG H+AKKL  +GH V+G+D +N+YY  SLK +RL  +G   EN+  +K
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG--KENFTFNK  58

Query  61   VVNSHKYNNLS--FVNLDILNKEQVLSLFNNYKFTHICHLAAQAGIRDSIENPDSYIAIN  118
            V + ++Y++LS  FV+    ++ +V           + +LAAQAG+R SIENP +YI  N
Sbjct  59   V-KLENYDDLSKVFVD----EQPEV-----------VVNLAAQAGVRYSIENPRTYIDSN  102

Query  119  IVGFFNILDACRIYKDSIEHFVYASTSAVYGLNEKMPSSEDSITDHPLNLYAASKKSNEV  178
            IVGF NIL+  R +  +I++++YAS+S+VYG N   P S     DHPL+LYAA+KKSNE+
Sbjct  103  IVGFMNILECSRHF--NIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNEL  160

Query  179  IAHAYSSSFNIPTTGLRFFTVYGPYGRPDMALYLFADGIMRQSTINVFNNGDMARDFTYV  238
            +AH+YS  +N+PTTGLRFFTVYGP GRPDMAL+ F+ +I+ + +I+V+N+G+M RDFTYV
Sbjct  161  MAHTYSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYV  220

Query  239  DDVVNGVCNVLKKPARSDSNFDTQNPNSSSSFAPYRIYNVGTGQAVKLMEFineleinle  298
            DD+V+++  ++KKPA ++ +    +P+++SS+APY++YN+G   +V+LMEF++ +E +L 
Sbjct  221  DDIVEAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLG  280

Query  299  nKACKNFLPMQKADVVESCCDISKLKNDFAYEALTSIKDGIRKFAIWY  346
            + A KN++ +Q +DV E+  ++  L  D+ + + T+I+DG+ KF  WY
Sbjct  281  KEARKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWY  328

581) gla in NC_013722


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  267 bits (999),  Expect = 4e-73, Method: Compositional matrix adjust.
 Identities = 153/332 (47%), Positives = 230/332 (70%), Gaps = 15/332 (4%)

Query  1    MTVLVTGAAGFVGAYTCRALAARGETVVGLDNYNDYYDPQLKRDRVAALCPQ-VDIRTLD  59
            M +L+TG+AGF+G+   + L  +G+ V+G+D+ NDYY   LK DR+ ++  +   +  + 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  60   LTDREGLSALFDETRPERVVHLAAQAGVRYSLQNPQAYVDSNLVGFVNMLELCRHRRVQH  119
            L + ++LS +F + +PE VV+LAAQAGVRYS++NP++Y+DSN+VGF+N+LE  RH  +Q+
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  120  LVYASSSSVYGDSAAAPFSEDQRIDQPRSLYAATKAANELMGHTYAQLYGLRATGLRFFT  179
            L+YASSSSVYG +++ PFS  + ID+P SLYAATK +NELM+HTY++LY L +TGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  180  VYGPWGRPDMAPLLFSRAVLAGRPIEVFNHGRMRRDFTFIADIVAGV-------------  226
            VYGPWGRPDMA + F++A++ +++I+V+NHG M RDFT++ DIV ++             
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  227  -LGALDHPCIDALPHRVFNLGNHRPVELERFIGVIETAAGRTAEKLYRPMQPGDMIETMA  285
              GA  +P     P +V+N+GN+ PV L  F+  IE   G+ A K Y  +QPGD+ ET A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  286  DTARAHAAFGFDPTTPIETGLPQVVQWCRDYF  317
            +       ++F P T I+ G+ + V+W  +Y+
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

582) L144_02165 in NC_022048


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  267 bits (1000),  Expect = 4e-73, Method: Compositional matrix adjust.
 Identities = 156/346 (46%), Positives = 251/346 (73%), Gaps = 18/346 (5%)

Query  1    MKIFLTGIAGFIGFHVAKKLVEKGHEVLGIDVLNDYYELKFKHERLEALGFCSKYVKTHK  60
            MKI++TG AGFIG H+AKKL+ +GH V+G+D +NDYY + +K++RL ++G   ++  T +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG-KENF--TFN  57

Query  61   IIKSEKYNNLSFAYLDILNKDKLLELFKDHKFTHVCHLAAQAGIRDSLENPDSYVSINIV  120
             +K E+Y++LS              +F D++   V +LAAQAG+R S+ENP +Y+  NIV
Sbjct  58   KVKLENYDDLS-------------KVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIV  104

Query  121  GFFNVLDVCRVYKENIEHFVYASTSSVYGINENMPSSEDSITDHPLNLYAASKKSNEMMA  180
            GF N+L+  R +  NI++++YAS+SSVYG N + P S     DHPL+LYAA+KKSNE+MA
Sbjct  105  GFMNILECSRHF--NIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMA  162

Query  181  HAYSASFNIPTTGLRFFTVYGTYGRPDMALYLFSDGIKNGKAINIFNNGNMARDFTYVGD  240
            H+YS  +N+PTTGLRFFTVYG  GRPDMAL+ F+ +I N++AI+++N+GNM RDFTYV+D
Sbjct  163  HTYSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDD  222

Query  241  IADGVYKVLKNPAKSDCNFDVKNPNSSTSSFPYRIYNIGTGHATKLLDFISELEANFDKK  300
            I +++ +++K+PA ++ +    +P++++S  PY++YNIG   + +L++F+  +E +++K 
Sbjct  223  IVEAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKE  282

Query  301  ALKNYMPMQKADVVESCCDILKLKNDVGYEAKVSIKEGIKEFSQWY  346
            A KNYM +Q +DV E+  ++  L  D+++ +  +I++G++ F +WY
Sbjct  283  ARKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWY  328

583) I871_02340 in NC_022079


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  267 bits (998),  Expect = 5e-73, Method: Compositional matrix adjust.
 Identities = 160/349 (46%), Positives = 251/349 (72%), Gaps = 24/349 (6%)

Query  1    MRVFLTGIAGFIGFYVAKKLADNGHEVLGVDILNDYYDPSLKYERLKILG---FDYEHID  57
            M++++TG AGFIG  +AKKL  +GH V+GVD +NDYY  SLK +RLK +G   F ++   
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNK--  58

Query  58   SGKVVQSNRYDNLSFVYLDILDKQKVLSLFSCYKFTHVCHLLAQAGIRDSIENPDSYISV  117
                V+ + YD+LS V++D  ++  V           V +L AQAG+R SIENP +YI  
Sbjct  59   ----VKLENYDDLSKVFVD--EQPEV-----------VVNLAAQAGVRYSIENPRTYIDS  101

Query  118  NIVGFFNVLDACRIYKENIEHFVYASTSAVYGLNEKMPSSEDNITDHPLNLYAASKKSNE  177
            NIVGF N+L+  R +  NI++++YAS+S+VYG N   P S  +  DHPL+LYAA+KKSNE
Sbjct  102  NIVGFMNILECSRHF--NIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNE  159

Query  178  VIAHAYSASFNIPTTGLRFFTVYGPYGRPDMALYLFAAGIINKTPINVFNNGNMARDFTY  237
            ++AH+YS  +N+PTTGLRFFTVYGP GRPDMAL+ F+ +I+N  +I+V+N+GNM RDFTY
Sbjct  160  LMAHTYSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTY  219

Query  238  IDDVVDGLYNILRNPAESDSNFDVRNPNSSSSRAPYRIYNIGTGHSIKIKDFINELEVNL  297
            +DD+V+++  ++++PA ++ +    +P+++SS APY++YNIG   ++++ +F++ +E +L
Sbjct  220  VDDIVEAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKL  279

Query  298  GNKAYKKFLPMQKSEVVESCCDISKLKNDLDYEALTSIKDGIKKFADWY  346
            G+ A K+++ +Q ++V E+  ++  L  D+D+ + T+I+DG++KF DWY
Sbjct  280  GKEARKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWY  328

584) wbnF in NC_016010


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  267 bits (998),  Expect = 5e-73, Method: Compositional matrix adjust.
 Identities = 149/332 (45%), Positives = 233/332 (71%), Gaps = 15/332 (4%)

Query  1    MTILVTGAAGFIGAYTCRALAARGETVVGLDNYNSYYDPQLKHDRVAALC-PGIDIRTLD  59
            M IL+TG+AGFIG+   + L  +G+ V+G+D+ N YY   LK+DR+ ++    + +  + 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  60   LTDREGLAALFDEIQPTRVVHLAAQAGVRYSLENPHAYVDSNLVGFVNMLELCRHRGVQH  119
            L + ++L+ +F + QP  VV+LAAQAGVRYS+ENP++Y+DSN+VGF+N+LE  RH  +Q+
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  120  LVYASSSSVYGDSATPPFSEDQRVDQPRSLYAATKAANELMGYTYAQLYGLRATGLRFFT  179
            L+YASSSSVYG +++ PFS  + +D+P SLYAATK +NELM+ TY++LY L +TGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  180  VYGPWGRPDMAPLIFSRAVLAGRPIEVFNHGKMQRDFTFVDDIVAGVLGALDTPSTAP--  237
            VYGPWGRPDMA + F++A++ +++I+V+NHG+M RDFT+VDDIV ++   +  P+++   
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  238  ------------VPHRVFNLGNHTPVELETFIDVIAQAAGRAAEKVYRPMQPGDMIRTMA  285
                         P +V+N+GN++PV L  F++ I +  G+ A K Y  +QPGD+  T A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  286  DTQRAQAAFGFDPATPVERGLPQVVEWCRQYF  317
            + +     ++F P T ++ G+ + V+W  +Y+
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

585) wbnF in NC_007508


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  267 bits (998),  Expect = 5e-73, Method: Compositional matrix adjust.
 Identities = 149/332 (45%), Positives = 233/332 (71%), Gaps = 15/332 (4%)

Query  1    MTILVTGAAGFIGAYTCRALAARGETVVGLDNYNSYYDPQLKHDRVAALC-PGIDIRTLD  59
            M IL+TG+AGFIG+   + L  +G+ V+G+D+ N YY   LK+DR+ ++    + +  + 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  60   LTDREGLAALFDEIQPTRVVHLAAQAGVRYSLENPHAYVDSNLVGFVNMLELCRHRGVQH  119
            L + ++L+ +F + QP  VV+LAAQAGVRYS+ENP++Y+DSN+VGF+N+LE  RH  +Q+
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  120  LVYASSSSVYGDSATPPFSEDQRVDQPRSLYAATKAANELMGYTYAQLYGLRATGLRFFT  179
            L+YASSSSVYG +++ PFS  + +D+P SLYAATK +NELM+ TY++LY L +TGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  180  VYGPWGRPDMAPLIFSRAVLAGRPIEVFNHGKMQRDFTFVDDIVAGVLGALDTPSTAP--  237
            VYGPWGRPDMA + F++A++ +++I+V+NHG+M RDFT+VDDIV ++   +  P+++   
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  238  ------------VPHRVFNLGNHTPVELETFIDVIAQAAGRAAEKVYRPMQPGDMIRTMA  285
                         P +V+N+GN++PV L  F++ I +  G+ A K Y  +QPGD+  T A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  286  DTQRAQAAFGFDPATPVERGLPQVVEWCRQYF  317
            + +     ++F P T ++ G+ + V+W  +Y+
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

586) LSL_0980 in NC_007929


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  267 bits (998),  Expect = 6e-73, Method: Compositional matrix adjust.
 Identities = 168/355 (48%), Positives = 251/355 (71%), Gaps = 33/355 (9%)

Query  10   RILITGGAGFIGANLILSLLQTVKSVNILTVDNINDYYDVSLKEWRLQQIESEATQHEES  69
            +ILITG AGFIG++L   L++  ++  ++ VD+INDYY VSLKE RL+ I  E       
Sbjct  2    KILITGTAGFIGSHLAKKLIK--QGHYVIGVDSINDYYSVSLKEDRLKSIGKE-------  52

Query  70   KFEFIKGDISDVGLVNQIFADFKPDIVVNLAAQAGVRNSITNPDAYIKSNIIGFYNILEA  129
            +F F K  + + + ++++F D +P++VVNLAAQAGVR SI NP +YI SNI+GF NILE 
Sbjct  53   NFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILE-  111

Query  130  CRHSYDNENGVEHLVFASSSSIYGNGKEIPYKTDSNTDKPISLYAATKKSDEMLAHVYSH  189
            C + ++    +++L++ASSSS+YG     P+ T  N D P+SLYAATKKS+E++AH YSH
Sbjct  112  CSRHFN----IQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSH  167

Query  190  LFGIPITGLRFFTVYGPGGRPDMAYFKFTKKLINDEKIQIFNYGNCRRDFTYIDDVVEGV  249
            L+ +P TGLRFFTVYGP GRPDMA FKFTK ++ND+ I+++N GN  RDFTY+DD+VE++
Sbjct  168  LYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAI  227

Query  250  KRVM--SGVPEK--SEQDLEP-----AYRIYNIGNHHPENLMEFVKILQDELVRANVLPK  300
             R++  ++ P+K  S  D +P     +Y++YNIGN+ P  LMEFV  +++ L +      
Sbjct  228  SRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGK------  281

Query  301  DYDFEGHMELVPMQPGDVAVTYADISELEKDFNFKPDTRLRVGLRKFAEWYRDFY  355
                E++ + + +QPGDV+ TYA++ +L +D++FKP+T ++ G+ KF +WY ++Y
Sbjct  282  ----EARKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

587) Mpop_3216 in NC_010725


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  267 bits (998),  Expect = 6e-73, Method: Compositional matrix adjust.
 Identities = 153/336 (46%), Positives = 227/336 (68%), Gaps = 6/336 (1%)

Query  1    MHALVTGSAGFIGHALSRRLLAAGHGVTGFDALSPYYDVALKRARHADLARHPGFEAVEA  60
            M  L+TG+AGFIG  L+++L+  GH V G D+++ YY V+LK  R   ++++  F     
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKV  59

Query  61   RLETPGALLDVMARVKPDLVFHLAAQAGVRYSLIDPGAYVEANLVGFANLLEAVRAHPVR  120
            +LE  + L  V    +P++V +LAAQAGVRYS+ +P +Y+++N+VGF N+LE  R   ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLLTASTSSAYGGNTSVPFRETDRAVSPLTLYAASKLANEAMAHSYAHLFGVPTTAFRFF  180
            +L+ AS+SS YG+NTS PF  +D    PL+LYAA+K +NE MAH+Y+HL+ +PTT++RFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFLFTRKILAGEPIEVFGEGAAERDFTFIDDLVDAILALSERP--PPR  238
            TVYGPWGRPDMALF FT+ I+ +++I+V+ +G   RDFT++DD+V+AI  L  +P  P +
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  239  PSAGGPVSPADTLSAVAPYRLVNIGGGRPVRLDAMIGALETALGRKAERVLKPLPPGDVI  298
              +G+   P+   S+ APY++ NIG   PVRL   + A+E  LG+ A +    L PGDV 
Sbjct  240  EWSGADPDPG---SSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVP  296

Query  299  RTHASTDLLADLVGRLPETPLEIGIPAFVKWYLGYY  334
             T A+ D L   ++  PET ++ G+  FV WYL YY
Sbjct  297  ETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

588) Vpar_0682 in NC_013520


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  267 bits (997),  Expect = 8e-73, Method: Compositional matrix adjust.
 Identities = 172/356 (49%), Positives = 257/356 (73%), Gaps = 30/356 (8%)

Query  13   ILVTGAAGFVGANLVMSLLSEAEGTQIIGIDSVNDYYDVALKEYRLQQIDELSKDNKNIW  72
            IL+TG+AGF+G++L   L+ +  G  +IG+DS+NDYY V+LKE RL+ I+      K+  
Sbjct  3    ILITGTAGFIGSHLAKKLIKQ--GHYVIGVDSINDYYSVSLKEDRLKSIG------KENF  54

Query  73   IFKKGNIADKSFVDEIFAIYKPRVVVNLAAQAGVRYSITNPDAYIESNIIGFYNILEACR  132
             F+K ++ +   +  +F   +P VVVNLAAQAGVRYSI NP +YI+SNI+GF NILE C 
Sbjct  55   TFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILE-CS  113

Query  133  HSYDDGERGVEHLVYASSSSVYGANKQIPYSTDDKVDNPVSLYAATKKSNELLAYSYAKL  192
            + ++     +++L+YASSSSVYGAN   P+ST D++D+P+SLYAATKKSNEL+A +Y+ L
Sbjct  114  RHFN-----IQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHL  168

Query  193  YNIPSTGLRFFTVYGPAGRPDMAYFGFTNTLRNGGTIKIFNYGNCKRDFTYIDDIVEGVS  252
            YN+P+TGLRFFTVYGP GRPDMA F FT+++ N+ +I ++N GN  RDFTY+DDIVE++S
Sbjct  169  YNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAIS  228

Query  253  KVI--STAPER-RNGADGLPV---PPYAIYNIGNSNPENLLDFVRILSEELVSAGVLSED  306
            +++  +++P++ ++GAD  P    +PY +YNIGN++P  L++FV  + + L         
Sbjct  229  RLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGK-------  281

Query  307  YNFEEHKELVPMQPGDVPVTYADTSALEADFGFKPNTTLREGLKRFAIWYKDFYMM  362
               E +K+ + +QPGDVP TYA+   L  D++FKP+TT+++G+++F  WY ++Y  
Sbjct  282  ---EARKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

589) A9601_13971 in NC_008816


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  266 bits (995),  Expect = 1e-72, Method: Compositional matrix adjust.
 Identities = 166/339 (49%), Positives = 246/339 (73%), Gaps = 10/339 (2%)

Query  5    RILITGAAGFIGSALILRLLENEKTIIGVDNLNNYYDVRLKKSRLKLITEKSKKLKANWI  64
            +ILITG+AGFIGS L  +L+ +   +IGVD++N+YY V LK  RLK I       K N  
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG------KENFT  55

Query  65   FHEFHIEDKKSLD--FITEKYSPSIVIHLAAQAGVRYSLDNPKSYADSNLIGFFNILEFC  122
            F+   +E+   L   F+ E+  P +V++LAAQAGVRYS++NP++Y DSN++GF NILE  
Sbjct  56   FNKVKLENYDDLSKVFVDEQ--PEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECS  113

Query  123  KENKVKNFVFASSSSVYGLNKKIPFVEDDNVDHPISFYAATKKSNELMAHSYSHLYDIPT  182
            ++ +++N+++ASSSSVYG N   PF   DN+DHP+S+YAATKKSNELMAH+YSHLY++PT
Sbjct  114  RHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPT  173

Query  183  TGLRFFTVYGPFGRPDMAPMIFANAILNSKPINIFNYGNLHRDFTYIDDIVNGLFGCCYK  242
            TGLRFFTVYGP GRPDMA   F++AI+N ++I+++N GN+ RDFTY+DDIV+++     K
Sbjct  174  TGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKK  233

Query  243  PAIKSENFSSNYQNKSYSNAPFQIFNIGNSNPIKIDYFISMLELNFNKKAIINLMPLQPG  302
            PA  + + S+   + + S AP++++NIGN++P+++  F+  +E ++ K A  N M LQPG
Sbjct  234  PASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPG  293

Query  303  DVKFTYADISKIQKWIGYKPKVSFEKGIREFSKWYLDFY  341
            DV  TYA++  + + I++KP  +++ G+  F  WYL++Y
Sbjct  294  DVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

590) RD1_B0043 in NC_008387


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  266 bits (994),  Expect = 1e-72, Method: Compositional matrix adjust.
 Identities = 160/331 (49%), Positives = 233/331 (71%), Gaps = 4/331 (1%)

Query  1    MITGSAGFVGYFTAHALLRQGWRVIGLDALSDYYDVTLKARRHAMLEEMPGFTPVIGRLE  60
            +ITG+AGF+G   A  L++QG  VIG+D+++DYY V+LK  R   +     FT    +LE
Sbjct  4    LITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG-KENFTFNKVKLE  62

Query  61   TPGLLQQLFAAHEPRLVIHLAAQAGVRYSIDNPASYVQANLVGTAELLEAVRAHPPAHTL  120
              + L ++F  ++P +V++LAAQAGVRYSI+NP +Y+++N+VG  ++LE  R     + +
Sbjct  63   NYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNLI  122

Query  121  LASTSSVYGANTEMPYTETHKADTQMSFYAATKKATEAMAHSYAHLYALPITMFRFFTVY  180
             AS+SSVYGANT  P++ +++ D  +S+YAATKK+ E MAH+Y+HLY LP T +RFFTVY
Sbjct  123  YASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTVY  182

Query  181  GPWGRPDMAHFKFTKAILNGDPIEVYNHGNQQRDFTYIDDLVAGIIALADAIPDPK---A  237
            GPWGRPDMA FKFTKAI+N+++I+VYNHGN  RDFTY+DD+V +I  L    + P+   +
Sbjct  183  GPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEWS  242

Query  238  PVPGDSLSPVAPFRVVNIGNGTPVKLMDYIAAIEAACGRTAEKIFLDAQPGDVPATWADT  297
                D+ S+ AP++V NIGN +PV+LM+++ AIE   G+ A K ++D QPGDVP T A+ 
Sbjct  243  GADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYANV  302

Query  298  SLLEALTGPRPTTDVHTGLQHFVDWYRSYYR  328
              L    + +P T ++ G++ FVDWY  YY+
Sbjct  303  DDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

591) BRE_445 in NC_011244


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  266 bits (995),  Expect = 9e-73, Method: Compositional matrix adjust.
 Identities = 162/348 (47%), Positives = 252/348 (73%), Gaps = 22/348 (6%)

Query  1    MRVLLTGIAGFIGFHVAKKLADDGHEVLGIDILNNYYDPSLKYERLEILGFNSENIDSKK  60
            M++L+TG AGFIG H+AKKL  +GH V+G+D +N+YY  SLK +RL  +G   EN+  +K
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG--KENFTFNK  58

Query  61   VVNSHKYNNLS--FVNLDILNKEQVLSLFNNYKFTHICHLAAQAGIRDSIENPDSYIAIN  118
            V + ++Y++LS  FV+    ++ +V           + +LAAQAG+R SIENP +YI  N
Sbjct  59   V-KLENYDDLSKVFVD----EQPEV-----------VVNLAAQAGVRYSIENPRTYIDSN  102

Query  119  IVGFFNILDACRIYKDSIEHFVYASTSAVYGLNEKMPSSEDSITDHPLNLYAASKKSNEV  178
            IVGF NIL+  R +  +I++++YAS+S+VYG N   P S     DHPL+LYAA+KKSNE+
Sbjct  103  IVGFMNILECSRHF--NIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNEL  160

Query  179  IAHAYSSSFNIPTTGLRFFTVYGPYGRPDMALYLFADGVMRQSTINVFNNGDMARDFTYV  238
            +AH+YS  +N+PTTGLRFFTVYGP GRPDMAL+ F+ +++ + +I+V+N+G+M RDFTYV
Sbjct  161  MAHTYSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYV  220

Query  239  DDVVNGVCNVLKKPARSDSNFDKQNPNSSSSFAPYRIYNVGTGQAVKLMEFineleinle  298
            DD+V+++  ++KKPA ++ +    +P+++SS+APY++YN+G   +V+LMEF++ +E +L 
Sbjct  221  DDIVEAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLG  280

Query  299  nKACKNFLPMQKADVVESCCDISKLKNDFAYEALTSIKDGIRKFAIWY  346
            + A KN++ +Q +DV E+  ++  L  D+ + + T+I+DG+ KF  WY
Sbjct  281  KEARKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWY  328

592) BpOF4_06525 in NC_013791


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  265 bits (990),  Expect = 2e-72, Method: Compositional matrix adjust.
 Identities = 183/342 (54%), Positives = 246/342 (72%), Gaps = 25/342 (7%)

Query  13   LITGAAGFIGYYMSKKLLEQGCvvvgvdnvndyydvKLKHARLEQLQPFDKFTFIKGDIS  72
            LITG+AGFIG  ++KKL+ QG  V+GVD++NDYY V LK+ RL  +   ++FTF K  + 
Sbjct  4    LITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKVKLE  62

Query  73   DKPMIDSVFEEYKPNIVVNLAAQAGVRYSIENPDVYIQSNIIGFYNILEACRYHPVEHLI  132
            +   +  VF + +P++VVNLAAQAGVRYSIENP  YI+SNI+GF NILE  R   +++LI
Sbjct  63   NYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNLI  122

Query  133  YASSSSVYGANKKVPFEETDFVDTPVSLYASTKKSNELMAHTYSHLYKIPATGLRFFTVY  192
            YASSSSVYGAN   PF  +D +D P+SLYA+TKKSNELMAHTYSHLY++P+TGLRFFTVY
Sbjct  123  YASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTVY  182

Query  193  GPMGRPDMAYFGFTDKYFAGEPIKIFNNGDFDHDLYRDFTYIDDIVEGIERLIGKPPVDA  252
            GP GRPDMA F FT     +++I ++N+G    ++ RDFTY+DDIVE+I RL+ KP+   
Sbjct  183  GPWGRPDMALFKFTKAIVNDQAIDVYNHG----NMMRDFTYVDDIVEAISRLVKKPASPN  238

Query  253  --------------VPHKVFNIGNNNPEKLMTFINTLERTLTKALGREVQFEKVYEPIKP  298
                           P KV+NIGNN+P +LM F++++E      LG+E +  K Y  ++P
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENK----LGKEAR--KNYMDLQP  292

Query  299  GDVPATYASTDLLQEAVGFKPKTSIEEGLQQFADWYVEYYKK  340
            GDVP TYA+ D L   ++FKP T+I++G+++F DWY+EYYKK
Sbjct  293  GDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

593) CC1_04390 in NC_021009


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  265 bits (991),  Expect = 2e-72, Method: Compositional matrix adjust.
 Identities = 173/355 (49%), Positives = 252/355 (71%), Gaps = 31/355 (8%)

Query  13   VLVTGSSGFIGANLVLELLRTQQSIKIIGIDNMNDYYDVSIKKYRLKQIEKAVAEHPESS  72
            +L+TG++GFIG++L   L++  + +  IG+D++NDYY VS+K  RLK I K        +
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYV--IGVDSINDYYSVSLKEDRLKSIGKE-------N  53

Query  73   WKFIKGSIADKALINEIFETYKPSVVVNLAAQAGVRYSITNPDVYIESNLIGFYNILEAC  132
              F K  + +   ++ +F   +P VVVNLAAQAGVRYSI NP  YI+SN++GF NILE C
Sbjct  54   FTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILE-C  112

Query  133  RHSYDNGQTGVEHLVYASSSSVYGSNKKVPYSTEDKVDNPVSLYAATKKSNELLAHAYSK  192
             + ++     +++L+YASSSSVYG+N   P+ST D++D+P+SLYAATKKSNEL+AH+YS 
Sbjct  113  SRHFN-----IQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSH  167

Query  193  LYNIPSTGLRFFTVYGPAGRPDMAYFGFTNKLRNNETIYIFNYGNCKRDFTYVDDIVEGI  252
            LYN+P+TGLRFFTVYGP GRPDMA F FT+ + N+++I ++N GN  RDFTYVDDIVE+I
Sbjct  168  LYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAI  227

Query  253  KRVMQ--ATPEKKLG----EDGLPIPPYAVYNIGNNHPENLLEFVDILQQELIRAKVLPE  306
             R+++  A+P+K  +    + G + +PY VYNIGNN P  L+EFV+ +++ L +      
Sbjct  228  SRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGK------  281

Query  307  DYDFESHKKLVPMQLGDVPVTYADTSALEADFGFKPSTSLREGLRKFAEWYREFY  361
                E++K+ + +Q GDVP TYA+   L  D++FKP T++++G+ KF +WY E+Y
Sbjct  282  ----EARKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

594) Mnod_4525 in NC_011894


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  265 bits (990),  Expect = 2e-72, Method: Compositional matrix adjust.
 Identities = 150/332 (46%), Positives = 235/332 (71%), Gaps = 3/332 (0%)

Query  1    MRCLVTGTAGFIGFHlarrllaaGHAVVGVDGLTDYYDVALKRARLSALAGPGFANHSFM  60
            M+ L+TGTAGFIG HLA++L+  GH V+GVD++ DYY V+LK  RL +++   F+ +   
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  61   LEEPGAFAALMGEVKPDIVVHLAAQAGVRYSLENPESYVAANMVGTFQVLEGLRQHPVRH  120
            LE+ + ++ +  + +P++VV+LAAQAGVRYS+ENP +Y+ +N+VG  ++LE  R+  +++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  121  ALMASTSSVYGGNPRTPFRETDTVATPLTIYAASKIAGEAMAHAYAHLWRIPTTAFRFFT  180
             + AS+SSVYG+N   PF  +D +  PL++YAA+K + E MAH+Y+HL  +PTT++RFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  181  VYGPWGRPDMALFLFTRKILAGEPVEVFDHGRAVRDFTYIDDLVESIVRLIEVPPGPE--  238
            VYGPWGRPDMALF FT+ I+ +++++V++HG  +RDFTY+DD+VE+I RL+  P++P+  
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  239  -PVSPADTLSPVAPFRIVNIGGGAPVTVGAMLDVLEAALGMKATRLLRDLPPGDVSRTEA  297
             + + +D  S+ AP+++ NIG  +PV +   ++ +E  LG  A +   DL PGDV+ T A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  298  ETRLLEDLIGYVPATPVTVGIPAFVAWYREHY  329
            +   L   I++ P T +  G+  FV WY E Y
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

595) SMD_4144 in NC_017671


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  264 bits (988),  Expect = 3e-72, Method: Compositional matrix adjust.
 Identities = 154/332 (47%), Positives = 235/332 (71%), Gaps = 15/332 (4%)

Query  1    MTILLTGAAGFIGAYTARALLEAGQAVVGLDNFNDYYDPQIKRDRVAALC-PSLDLRALD  59
            M IL+TG+AGFIG+  A+ L+  G+ V+G+D++NDYY   +K DR+ ++   ++ +  + 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  60   LTDREGLAALFDEVQPTAVIHLAAQAGVRYSLENPHAYVDSNLVGFVNMLELCRHRGVQH  119
            L + ++L+ +F + QP  V++LAAQAGVRYS+ENP++Y+DSN+VGF+N+LE  RH  +Q+
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  120  LVYASSSSVYGDSATPPFSEDQRVDQPRSLYAATKAANELMAYTYAQLYGLHATGLRFFT  179
            L+YASSSSVYG +++ PFS  + +D+P SLYAATK +NELMA TY++LY L +TGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  180  VYGPWGRPDMAPLLFSRAVLAGRPIDVFNEGRMQRDFTHVSDIVSGI-------------  226
            VYGPWGRPDMA + F++A++ +++IDV+N+G M RDFT V DIV +I             
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  227  -LGALAHPADGPVPHRVFNLGNHTPVELERFISVIEQAAGRPAQKVYKPMQPGDMVRTMA  285
              GA ++P+ +  P +V+N+GN++PV L  F+  IE+  G+ A+K Y  +QPGD+  T A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  286  DTRRAHDAFGFDAVTPIEEGLPPVVQWCREYF  317
            +       ++F + T I++G+   V+W  EY+
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

596) PP1Y_AT8131 in NC_015580


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  264 bits (988),  Expect = 4e-72, Method: Compositional matrix adjust.
 Identities = 157/316 (50%), Positives = 229/316 (73%), Gaps = 10/316 (3%)

Query  25   LMARGQPVIGIDSMNDYYQVSLKEARRDRLVARFGNLFTFHTLDFADMEATQAALAPHDF  84
            L+ +G+ VIG+DS+NDYY VSLKE   DRL +   + FTF+ + + + +     +  ++ 
Sbjct  20   LIKQGHYVIGVDSINDYYSVSLKE---DRLKSIGKENFTFNKVKLENYDDLSKVFVDEQP  76

Query  85   GLIVHLGAQAGVRYSLENPQAYVASNLAGHVNMLEIARARQVGHMVYASSSSVYGGNEKL  144
             ++V+L+AQAGVRYS+ENP++Y+ SN+ G +N+LE +R  ++ +++YASSSSVYG+N   
Sbjct  77   EVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNLIYASSSSVYGANTSK  136

Query  145  PFAVEDRADHPVSLYAATKKADELMSETYAHLFRIPLTGLRFFTVYGPWGRPDMAMWKFT  204
            PF+  D  DHP+SLYAATKK++ELM++TY+HL+ +P TGLRFFTVYGPWGRPDMA+ KFT
Sbjct  137  PFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTVYGPWGRPDMALFKFT  196

Query  205  ERMLSGRPIDVYNHGEMQRDFTYIDDIVGGVLACLDRPPVDDGRE------KAGGSVKPH  258
              ++++++IDVYNHG+M RDFTY+DDIV ++ + L + P    +E       +G+S  P 
Sbjct  197  KAIVNDQAIDVYNHGNMMRDFTYVDDIVEAI-SRLVKKPASPNKEWSGADPDPGSSYAPY  255

Query  259  ALYNIGNNRSERLMRLIEVLEDACGVKAELNLLPMQPGDVPATYANIDALTRDTGYAPTT  318
             +YNIGNN + RLM ++E +E+  G  A  N + +QPGDVP TYAN+D L RD ++ P T
Sbjct  256  KVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYANVDDLFRDIDFKPET  315

Query  319  PIEIGVPRFVEWYRGY  334
             I+ GV +FV+WY  Y
Sbjct  316  TIQDGVNKFVDWYLEY  331

597) Oter_0892 in NC_010571


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  264 bits (987),  Expect = 4e-72, Method: Compositional matrix adjust.
 Identities = 158/336 (48%), Positives = 239/336 (72%), Gaps = 14/336 (4%)

Query  1    MKVLVTGAAGFIGYHVARRLAETKHCEVLGLDNLNDYYSVELKRARLTELEQLEDFRFVQ  60
            MK+L+TG+AGFIG H+A++L    H  V+G+D++NDYYSV LK  RL  + + E+F F +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHY-VIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNK  58

Query  61   ADFGEAAAFEGIYSHFKPDYVVHLGAQAGVRHSAENPAAYTHSNITGFLNVLEACRRRPP  120
              + +   +  ++ + +P+ VV+L+AQAGVR S ENP +Y +SNI GF+N+LE  R+   
Sbjct  59   VKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNI  118

Query  121  KHLVFASSSSVYGAHAVVPFREDANTDHPISYYGATKKSNELMAHTYAHLYGLTVTGLRF  180
            ++L++ASSSSVYGA++  PF    N DHP+S Y+ATKKSNELMAHTY+HLY L  TGLRF
Sbjct  119  QNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRF  178

Query  181  FTVYGPWSRPDMAPILFSQAICAGRPIKLFNQGRNRRDFTYVDDIVDGVVKVLLYPP---  237
            FTVYGPW+RPDMA + F++AI  +++I ++N+G   RDFTYVDDIV+++ +++  P+   
Sbjct  179  FTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPN  238

Query  238  ----ATLPVP-----PFRLFNIGHNRPVEVLLFVQMLEELLGKKAVVELVPPQPGDMLET  288
                ++ P P     P++++NIG+N PV ++ FV+ +E+ LGK A  + +  QPGD+ ET
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPET  298

Query  289  CASIDRLREAIGYSPRISLEDGLRRFVDWFRRYYQS  324
             A++D L   I++ P  +++DG+ +FVDW+  YY+ 
Sbjct  299  YANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

598) HN6_00804 in NC_017481


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  264 bits (987),  Expect = 4e-72, Method: Compositional matrix adjust.
 Identities = 166/355 (47%), Positives = 250/355 (71%), Gaps = 33/355 (9%)

Query  10   RILITGGAGFIGANLILSLLQTVKSVNILTVDNINDYYDISLKEWRLQQIESEATQHEES  69
            +ILITG AGFIG++L   L++  ++  ++ VD+INDYY +SLKE RL+ I  E       
Sbjct  2    KILITGTAGFIGSHLAKKLIK--QGHYVIGVDSINDYYSVSLKEDRLKSIGKE-------  52

Query  70   KFEFIKGDISDVGLVNQIFADFKPDIVVNLAAQAGVRNSITNPDAYIKSNIIGFYNILEA  129
            +F F K  + + + ++++F D +P++VVNLAAQAGVR SI NP +YI SNI+GF NILE 
Sbjct  53   NFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILE-  111

Query  130  CRHSYDNENGVEHLVFASSSSIYGNGKEIPYKTDSNTDKPIFLYAATKKSDEMLAHVYSH  189
            C + ++    +++L++ASSSS+YG     P+ T  N D P+ LYAATKKS+E++AH YSH
Sbjct  112  CSRHFN----IQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSH  167

Query  190  LFGIPITGLRFFTVYGPGGRPDMAYFKFTKKLINDEKIQIFNYGNCRRDFTYIDDVVEGV  249
            L+ +P TGLRFFTVYGP GRPDMA FKFTK ++ND+ I+++N GN  RDFTY+DD+VE++
Sbjct  168  LYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAI  227

Query  250  KRVM--SGVPEK--SEQDLEP-----AYRIYNIGNHHPENLMEFVKILQDELVRANVLPK  300
             R++  ++ P+K  S  D +P     +Y++YNIGN+ P  LMEFV  +++ L +      
Sbjct  228  SRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGK------  281

Query  301  DYDFEGHMELVPMQPGDVAVTYADISELEKDFNFKPDTRLRVGLRKFAEWYRDFY  355
                E++ + + +QPGDV+ TYA++ +L +D++FKP+T ++ G+ KF +WY ++Y
Sbjct  282  ----EARKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

599) BgCN_0457 in NC_018747


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  264 bits (988),  Expect = 4e-72, Method: Compositional matrix adjust.
 Identities = 155/346 (45%), Positives = 250/346 (73%), Gaps = 18/346 (5%)

Query  1    MKIFLTGIAGFIGFHVAKKLVEEGHEVLGVDILNDYYELKFKNERLEALGFCPNDVKTRK  60
            MKI++TG AGFIG H+AKKL+ +GH V+GVD +NDYY + +K++RL ++G   ++  T +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG---KENFTFN  57

Query  61   IIKSEKYNNLSFAYFDILNKDKLLKLFKEYKFTHVCHLAAQAGIRDSLENPDSYVSINIV  120
             +K E+Y++LS             K+F + +   V +LAAQAG+R S+ENP +Y+  NIV
Sbjct  58   KVKLENYDDLS-------------KVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIV  104

Query  121  GFFNVLDVCRVYKENIKHFVYASTSSVYGINENIPSSEDSITDHPLNLYAASKKSNEMIA  180
            GF N+L+  R +  NI++++YAS+SSVYG N + P S     DHPL+LYAA+KKSNE++A
Sbjct  105  GFMNILECSRHF--NIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMA  162

Query  181  HAYSASFNIPTTGLRFFTVYGTYGRPDMALYLFSDGIKNGEPINIFNNGNMARDFTYVSD  240
            H+YS  +N+PTTGLRFFTVYG  GRPDMAL+ F+ +I N+++I+++N+GNM RDFTYV D
Sbjct  163  HTYSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDD  222

Query  241  IANGVYKVLKNPAKSDCNFDVKNPNSSTSSFPYRIYNIGTGHATKLLDFIKELEANFDKK  300
            I +++ +++K+PA ++ +    +P++++S  PY++YNIG   + +L++F+  +E +++K 
Sbjct  223  IVEAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKE  282

Query  301  ALKNYMPMQKADVVESCCDIVKLKNDVGYEAKISIKEGIKEFSQWY  346
            A KNYM +Q +DV E+  ++  L  D+++ +  +I++G++ F +WY
Sbjct  283  ARKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWY  328

600) CC_2378 in NC_002696


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  264 bits (985),  Expect = 5e-72, Method: Compositional matrix adjust.
 Identities = 150/328 (46%), Positives = 226/328 (69%), Gaps = 18/328 (5%)

Query  6    IIVTGAAGFVGYHVAERLLDRGETVIGVDVFNAYYDPALKEARAARLDGRDGFTMLRMDI  65
            I++TG+AGF+G H+A +L+ +G+ VIGVD +N YY  +LKE R   + G++ FT  ++ +
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKVKL  61

Query  66   ADHEALADLVKASGAQKVIHLAAQAGVRYSIENPFAYERSNLAGHLSVLEACRHAGVEHL  125
             + + L+ +     ++ V++LAAQAGVRYSIENP +Y  SN+ G +++LE  RH  +++L
Sbjct  62   ENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNL  121

Query  126  VYASSSSVYGDRPLNGDGFRESDPAETPVSLYAATKRSCELLSQSYAKLYGFPQSGLRFF  185
            +YASSSSVYG     +  F  SD  + P+SLYAATK+S EL++++Y+ LY +P +GLRFF
Sbjct  122  IYASSSSVYGAN--TSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  186  TVYGPWGRPDMAYFSFTEKMLKGETIEVYGEGKMARDFTYIDDIVDGILGVLDNP--PAK  243
            TVYGPWGRPDMA F FT  ++++++I+VY +G+M RDFTY+DDIV++I  ++ +P  P K
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  244  -------------GGHEVYNIGDNDPVGLMDMINTLEAALGIEANKVFRPMQPGDVTATY  290
                         +   VYNIG+N PV LM+ ++++E  LG EA K +  +QPGDV  TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  291  ANIDKLHALCGYKPKVKLAEGLARFVDW  318
            AN+D L    ++KP   + +G+ +FVDW
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDW  327

601) CCNA_02463 in NC_011916


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  264 bits (985),  Expect = 5e-72, Method: Compositional matrix adjust.
 Identities = 150/328 (46%), Positives = 226/328 (69%), Gaps = 18/328 (5%)

Query  6    IIVTGAAGFVGYHVAERLLDRGETVIGVDVFNAYYDPALKEARAARLDGRDGFTMLRMDI  65
            I++TG+AGF+G H+A +L+ +G+ VIGVD +N YY  +LKE R   + G++ FT  ++ +
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKVKL  61

Query  66   ADHEALADLVKASGAQKVIHLAAQAGVRYSIENPFAYERSNLAGHLSVLEACRHAGVEHL  125
             + + L+ +     ++ V++LAAQAGVRYSIENP +Y  SN+ G +++LE  RH  +++L
Sbjct  62   ENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNL  121

Query  126  VYASSSSVYGDRPLNGDGFRESDPAETPVSLYAATKRSCELLSQSYAKLYGFPQSGLRFF  185
            +YASSSSVYG     +  F  SD  + P+SLYAATK+S EL++++Y+ LY +P +GLRFF
Sbjct  122  IYASSSSVYGAN--TSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  186  TVYGPWGRPDMAYFSFTEKMLKGETIEVYGEGKMARDFTYIDDIVDGILGVLDNP--PAK  243
            TVYGPWGRPDMA F FT  ++++++I+VY +G+M RDFTY+DDIV++I  ++ +P  P K
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  244  -------------GGHEVYNIGDNDPVGLMDMINTLEAALGIEANKVFRPMQPGDVTATY  290
                         +   VYNIG+N PV LM+ ++++E  LG EA K +  +QPGDV  TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  291  ANIDKLHALCGYKPKVKLAEGLARFVDW  318
            AN+D L    ++KP   + +G+ +FVDW
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDW  327

602) lspL in NC_012988


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  264 bits (986),  Expect = 5e-72, Method: Compositional matrix adjust.
 Identities = 151/335 (46%), Positives = 229/335 (69%), Gaps = 4/335 (1%)

Query  1    MHALVTGSAGFIGHALSRRLLAAGFGVTGFDGLSPYYDVGLKRARHADLAQSPGFEAVEA  60
            M  L+TG+AGFIG  L+++L+  G  V G D+++ YY V+LK  R   +++   F     
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKV  59

Query  61   RLETPSALLDVMARVKPDLVFHLAAQAGVRYSLIDPGAYVEANLVGFANLLEAVRAHPVK  120
            +LE    L  V    +P++V +LAAQAGVRYS+ +P +Y+++N+VGF N+LE  R   ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLLAASTSSAYGGNASVPFRETDRAVSPLTLYAASKLANEAMAHSYAHLFRIPTTAFRFF  180
            +L+ AS+SS YG+N+S PF  +D    PL+LYAA+K +NE MAH+Y+HL+ +PTT++RFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFLFTRKILAGEPIEVFGEGAAERDFTFIDDLIDAIVALSERPPPMPS  240
            TVYGPWGRPDMALF FT+ I+ +++I+V+ +G   RDFT++DD+++AI  L  +P++ P+
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPAS-PN  238

Query  241  EGGPVSAADTLSTVAPYRLVNIGGGRPVRLDAMIGALEAALGRKAERVLKPLPPGDVIRT  300
               + + +D  S+ APY++ NIG   PVRL   + A+E  LG+ A +    L PGDV  T
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPET  298

Query  301  HAS-PDLLRDLVGRLPETPLETGIPAFVRWYLDYY  334
             A+  DL+RD+  + PET ++ G+  FV WYL+YY
Sbjct  299  YANVDDLFRDIDFK-PETTIQDGVNKFVDWYLEYY  332

603) lspL in NC_012808


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  264 bits (985),  Expect = 6e-72, Method: Compositional matrix adjust.
 Identities = 151/335 (46%), Positives = 230/335 (69%), Gaps = 4/335 (1%)

Query  1    MHALVTGSAGFIGHALSRRLLAAGFGVTGFDGLSPYYDVGLKRARQADLAQSPRFEAVEA  60
            M  L+TG+AGFIG  L+++L+  G  V G D+++ YY V+LK  R   +++   F     
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKV  59

Query  61   RLETPGALLDVMARVKPDLVFHLAAQAGVRYSLIDPGAYVEANLVGFANLLEAVRAHPVK  120
            +LE  + L  V    +P++V +LAAQAGVRYS+ +P +Y+++N+VGF N+LE  R   ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLLVASTSSAYGGNASVPFRETDRAVSPLTLYAASKLANEAMAHSYAHLFRVPTTAFRFF  180
            +L+ AS+SS YG+N+S PF  +D    PL+LYAA+K +NE MAH+Y+HL+ +PTT++RFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFLFTRKILAGEPIEVFGEGAAERDFTFIDDLIDAIVALSERPPPMPS  240
            TVYGPWGRPDMALF FT+ I+ +++I+V+ +G   RDFT++DD+++AI  L  +P++ P+
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPAS-PN  238

Query  241  EGGPVSAADTLSTVAPYRLVNIGGGRPVRLDAMIGALEAALGRKAERVLKPLPPGDVIRT  300
               + + +D  S+ APY++ NIG   PVRL   + A+E  LG+ A +    L PGDV  T
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPET  298

Query  301  HAS-PDLLRDLVGRLPETPLETGIPAFVRWYLDYY  334
             A+  DL+RD+  + PET ++ G+  FV WYL+YY
Sbjct  299  YANVDDLFRDIDFK-PETTIQDGVNKFVDWYLEYY  332

604) Cseg_0088 in NC_014100


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  264 bits (985),  Expect = 6e-72, Method: Compositional matrix adjust.
 Identities = 147/328 (45%), Positives = 226/328 (69%), Gaps = 18/328 (5%)

Query  6    IIVTGAAGFVGYHVAERLLDRGEAVIGVDVFNAYYDPALKEARASRLDGRDAFTMVRMDI  65
            I++TG+AGF+G H+A +L+ +G+ VIGVD +N YY  +LKE R   + G++ FT  ++ +
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKVKL  61

Query  66   AEHEALAALVNASGAKQVIHLAAQAGVRYSIDNPFAYERSNLAGHLSVLEACRHAGVEHL  125
             + + L+ +     +  V++LAAQAGVRYSI+NP +Y  SN+ G +++LE  RH  +++L
Sbjct  62   ENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNL  121

Query  126  VYASSSSVYGDRPLNGDGFKESDPAESPVSLYAATKRSCELLSQSYAKLYGFPQSGLRFF  185
            +YASSSSVYG     +  F  SD  + P+SLYAATK+S EL++++Y+ LY +P +GLRFF
Sbjct  122  IYASSSSVYGAN--TSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  186  TVYGPWGRPDMAYYGFTEKMLKGQEIEVYGEGKMARDFTYIDDIVDGILGVLDNPPAQ--  243
            TVYGPWGRPDMA + FT  ++++Q I+VY +G+M RDFTY+DDIV++I  ++ +P++   
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  244  -------------GGHEVYNIGDNDPVGLMDMIATLEKALGIEAKKVFRPMQPGDVTATY  290
                         +   VYNIG+N PV LM+ + ++E+ LG EA+K +  +QPGDV  TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  291  ANIDKLHALCGYKPKVKLAEGLQRFVDW  318
            AN+D L    ++KP   + +G+++FVDW
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDW  327

605) Mext_3027 in NC_010172


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  263 bits (982),  Expect = 1e-71, Method: Compositional matrix adjust.
 Identities = 151/335 (46%), Positives = 230/335 (69%), Gaps = 4/335 (1%)

Query  1    MHALVTGSAGFIGHALSRRLLAAGFGVTGFDGLSPYYDVGLKRARHADLAQSPRFEAVEA  60
            M  L+TG+AGFIG  L+++L+  G  V G D+++ YY V+LK  R   +++   F     
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKV  59

Query  61   RLETPGALLDVMARVKPDLVFHLAAQAGVRYSLIDPGAYVEANLVGFANLLEAVRAHPVK  120
            +LE  + L  V    +P++V +LAAQAGVRYS+ +P +Y+++N+VGF N+LE  R   ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLLVASTSSAYGGNASVPFRETDRAVSPLTLYAASKLANEAMAHSYAHLFRVPTTAFRFF  180
            +L+ AS+SS YG+N+S PF  +D    PL+LYAA+K +NE MAH+Y+HL+ +PTT++RFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFLFTRKILAGEPIEVFGEGAAERDFTFIDDLIDAIVALSERPPPMPS  240
            TVYGPWGRPDMALF FT+ I+ +++I+V+ +G   RDFT++DD+++AI  L  +P++ P+
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPAS-PN  238

Query  241  EGGPISAADTLSTVAPYRLVNIGGGRPVRLDAMIGALEAALGRKAERVLKPLPPGDVIRT  300
               + + +D  S+ APY++ NIG   PVRL   + A+E  LG+ A +    L PGDV  T
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPET  298

Query  301  HAS-PDLLRDLVGRLPETPLETGIPAFVRWYLDYY  334
             A+  DL+RD+  + PET ++ G+  FV WYL+YY
Sbjct  299  YANVDDLFRDIDFK-PETTIQDGVNKFVDWYLEYY  332

606) Mchl_3251 in NC_011757


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  263 bits (983),  Expect = 8e-72, Method: Compositional matrix adjust.
 Identities = 151/335 (46%), Positives = 230/335 (69%), Gaps = 4/335 (1%)

Query  1    MHALVTGSAGFIGHALSRRLLAAGFGVTGFDGLSPYYDVGLKRARHADLAQSPGFEAVEA  60
            M  L+TG+AGFIG  L+++L+  G  V G D+++ YY V+LK  R   +++   F     
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKV  59

Query  61   RLETPGALLDVMARVKPDLVFHLAAQAGVRYSLIDPGAYVEANLVGFANLLEAVRAHPVK  120
            +LE  + L  V    +P++V +LAAQAGVRYS+ +P +Y+++N+VGF N+LE  R   ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLLVASTSSAYGGNASVPFRETDRAVSPLTLYAASKLANEAMAHSYAHLFRVPTTAFRFF  180
            +L+ AS+SS YG+N+S PF  +D    PL+LYAA+K +NE MAH+Y+HL+ +PTT++RFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPWGRPDMALFLFTRKILAGEPIEVFGEGAAERDFTFIDDLIDAIVALSERPPPMPS  240
            TVYGPWGRPDMALF FT+ I+ +++I+V+ +G   RDFT++DD+++AI  L  +P++ P+
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPAS-PN  238

Query  241  EGGPISAADTLSTVAPYRLVNIGGGRPVRLDAMIGALEAALGRKAERVLKPLPPGDVIRT  300
               + + +D  S+ APY++ NIG   PVRL   + A+E  LG+ A +    L PGDV  T
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPET  298

Query  301  HAS-PDLLRDLVGRLPETPLETGIPAFVRWYLDYY  334
             A+  DL+RD+  + PET ++ G+  FV WYL+YY
Sbjct  299  YANVDDLFRDIDFK-PETTIQDGVNKFVDWYLEYY  332

607) KK9_0460 in NC_017717


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  262 bits (981),  Expect = 1e-71, Method: Compositional matrix adjust.
 Identities = 154/346 (45%), Positives = 248/346 (72%), Gaps = 18/346 (5%)

Query  1    MKIFLTGIAGFIGFHVAKKLVEEGHEVLGVDILNDYYELKFKNERLEALGFCSNDVKTHK  60
            MKI++TG AGFIG H+AKKL+ +GH V+GVD +NDYY + +K++RL ++G   ++  T +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG---KENFTFN  57

Query  61   IIKSEKYNNLSFAYldilnkdkllklfkEYKFTHVCHLAAQAGIRDSLENPDSYVSINIV  120
             +K E+Y++LS  ++D                  V +LAAQAG+R S+ENP +Y+  NIV
Sbjct  58   KVKLENYDDLSKVFVDEQPEV-------------VVNLAAQAGVRYSIENPRTYIDSNIV  104

Query  121  GFFNVLDVCRVYKENIKHFVYASTSSVYGINENIPSSEDSITDHPLNLYAASKKSNEMIA  180
            GF N+L+  R +  NI++++YAS+SSVYG N + P S     DHPL+LYAA+KKSNE++A
Sbjct  105  GFMNILECSRHF--NIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMA  162

Query  181  HAYSASFNIPTTGLRFFTVYGTYGRPDMALYLFSDGIKNGEPINIFNNGNMARDFTYVSD  240
            H+YS  +N+PTTGLRFFTVYG  GRPDMAL+ F+ +I N+++I+++N+GNM RDFTYV D
Sbjct  163  HTYSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDD  222

Query  241  IANGVYKVLKNPAKSDCNFDVKNPNSSTSSFPYRIYNIGTGHATKLLDFIRELEANFDKK  300
            I +++ +++K+PA ++ +    +P++++S  PY++YNIG   + +L++F+  +E +++K 
Sbjct  223  IVEAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKE  282

Query  301  ALKNYMPMQKADVVESCCDIVKLKNDVGYEAKISIKEGIKEFSQWY  346
            A KNYM +Q +DV E+  ++  L  D+++ +  +I++G++ F +WY
Sbjct  283  ARKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWY  328

608) gAE4 in NC_015713


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  262 bits (978),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 157/326 (49%), Positives = 232/326 (72%), Gaps = 18/326 (5%)

Query  10   VFITGIAGFIGSHLASFLKKRGDYVIGCDNFNDYYSPELKKARVERLKKQGIEILNCDIC  69
            ++ITG AGFIGSHLA  L K+G+YVIG D++NDYYS  LK  R+  + K+ + + +  + 
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVKLE  62

Query  70   DQDVLSRLFDEKGFTHIVHLAAQAGVRYSITHPFPYSHSNLNGFLHILELCRHHQPLKLV  129
            + D LS++F +     +V+LAAQAGVRYSI +P  Y +SN+ GF++ILE  RH +  +L+
Sbjct  63   NYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNLI  122

Query  130  FASSSSVYGGNTKIPFCESDPTDHPISLYAATKKSGELLAQTYYHLYHFPIIGLRFFTVY  189
            +ASSSSVYG+NT  PF  SD  DHP+SLYAATKKS EL+A+TY HLY++P  GLRFFTVY
Sbjct  123  YASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTVY  182

Query  190  GPWGRPDMAYYSFTESILNDKPIPVFNHGKMGRDFTYIDDIVDGTVRAL--------DFE  241
            GPWGRPDMA + FT +I+ND++I V+NHG+M RDFTY+DDIV++  R +        +  
Sbjct  183  GPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEWS  242

Query  242  GG----------FELFNLGNNQSESLMEMIHILEKHIGKKARIDFKPMQLGDVEQTFADI  291
            G+          + ++N+GNN +  LME ++ +E+ +GK AR ++  +Q GDV +T+A++
Sbjct  243  GADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYANV  302

Query  292  DKAQKLLGFQPKVSLDLGLERFVQWY  317
            D   + ++F+P  +++ G+++FV+WY
Sbjct  303  DDLFRDIDFKPETTIQDGVNKFVDWY  328

609) BafHLJ01_0486 in NC_018887


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  262 bits (978),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 154/346 (45%), Positives = 249/346 (72%), Gaps = 18/346 (5%)

Query  1    MKIFLTGIAGFIGFHVAKKLVEKGHEVLGIDILNDYYDLKFKHERLEALGFCSKDVKTDK  60
            MKI++TG AGFIG H+AKKL+ +GH V+G+D +NDYY + +K++RL ++G   K+  T +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG---KENFTFN  57

Query  61   IIKSEKYNNLSFAYLDILNKDKLLELFKEYKFTHVCHLAAQAGIRDSLENPDSYVSINIV  120
             +K E+Y++LS  ++D                  V +LAAQAG+R S+ENP +Y+  NIV
Sbjct  58   KVKLENYDDLSKVFVDEQPE-------------VVVNLAAQAGVRYSIENPRTYIDSNIV  104

Query  121  GFFNVLDVCRVCKENIKHFVYASTSSVYGINENIPSNEDSSTDHPLNLYAASKKSNEMIA  180
            GF N+L+  R    NI++++YAS+SSVYG N + P +   + DHPL+LYAA+KKSNE++A
Sbjct  105  GFMNILECSRHF--NIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMA  162

Query  181  HAYSASFNIPTTGLRFFTVYGTYGRPDMALYLFSDGIKNGESINIFNNGNMARDFTYVSD  240
            H+YS  +N+PTTGLRFFTVYG  GRPDMAL+ F+ +I N+++I+++N+GNM RDFTYV D
Sbjct  163  HTYSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDD  222

Query  241  IANGVYKVLKNPARSDCNFDVKNPNSSTSSFPYRIYNIGTGHATKLLDFIEELEANFDKK  300
            I +++ +++K+PA ++ +    +P++++S  PY++YNIG   + +L++F+E +E +++K 
Sbjct  223  IVEAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKE  282

Query  301  ALKNYMPMQKADVVESCCDILKLKNDVGYEAKISIKEGIKEFSQWY  346
            A KNYM +Q +DV E+  ++  L  D+++ +  +I++G++ F +WY
Sbjct  283  ARKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWY  328

610) XFLM_00665 in NC_017562


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  262 bits (979),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 148/334 (45%), Positives = 234/334 (71%), Gaps = 15/334 (4%)

Query  1    MTVLVTGAAGFIGAHVCRALAARNDTVVGLDNYNAYYDPQLKRDRVTALCPDVY-IRTLD  59
            M +L+TG+AGFIG+H+ + L  + + V+G+D+ N YY   LK DR+ ++  + + +  + 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  60   LTDRERCAALFNEVQPDQVVHLAAQAGVRYSIENPHAYVDSNLVGFLNVLELCRHCRVQH  119
            L + +  + +F + QP+ VV+LAAQAGVRYSIENP++Y+DSN+VGF+N+LE  RH  +Q+
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  120  LVYASSSSVYGDSAIPPFSEQQRVDQPRSLYGATKVANEVMAYSYAQLYGLRATGLRFFT  179
            L+YASSSSVYG ++  PFS  + +D+P SLY+ATK +NE+MA +Y++LY L +TGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  180  VYGPWGRPDMAPLIFSRAVMEGRPIEVFNHGRMERDFTFINDIVAGV-------------  226
            VYGPWGRPDMA + F++A++++++I+V+NHG M RDFT+++DIV ++             
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  227  -IGALDAPGEQAVPHRLFNLGNHTPVSLEHFIKVIEQAAGRPADKHYKPMQPGDmmatma  285
              GA   PG    P +++N+GN++PV L +F+  IE+  G+ A K+Y  +QPGD+  T A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  286  diaaaraaFGFEPVTSIEIGMPQVVEWCRHYFDT  319
            ++      ++F P T+I+ G+ + V+W  +Y+  
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

611) XfasM23_1398 in NC_010577


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  262 bits (979),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 148/334 (45%), Positives = 234/334 (71%), Gaps = 15/334 (4%)

Query  1    MTVLVTGAAGFIGAHVCRALAARNDTVVGLDNYNAYYDPQLKRDRVTALCPDVY-IRTLD  59
            M +L+TG+AGFIG+H+ + L  + + V+G+D+ N YY   LK DR+ ++  + + +  + 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  60   LTDRERCAALFNEVQPDQVVHLAAQAGVRYSIENPHAYVDSNLVGFLNVLELCRHCRVQH  119
            L + +  + +F + QP+ VV+LAAQAGVRYSIENP++Y+DSN+VGF+N+LE  RH  +Q+
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  120  LVYASSSSVYGDSAIPPFSEQQRVDQPRSLYGATKVANEVMAYSYAQLYGLRATGLRFFT  179
            L+YASSSSVYG ++  PFS  + +D+P SLY+ATK +NE+MA +Y++LY L +TGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  180  VYGPWGRPDMAPLIFSRAVMEGRPIEVFNHGRMERDFTFINDIVAGV-------------  226
            VYGPWGRPDMA + F++A++++++I+V+NHG M RDFT+++DIV ++             
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  227  -IGALDAPGEQAVPHRLFNLGNHTPVSLEHFIKVIEQAAGRPADKHYKPMQPGDmmatma  285
              GA   PG    P +++N+GN++PV L +F+  IE+  G+ A K+Y  +QPGD+  T A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  286  diaaaraaFGFEPVTSIEIGMPQVVEWCRHYFDT  319
            ++      ++F P T+I+ G+ + V+W  +Y+  
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

612) wbnF in NC_004556


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  262 bits (979),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 148/334 (45%), Positives = 234/334 (71%), Gaps = 15/334 (4%)

Query  1    MTVLVTGAAGFIGAHVCRALAARNDTVVGLDNYNAYYDPQLKRDRVTALCPDVY-IRTLD  59
            M +L+TG+AGFIG+H+ + L  + + V+G+D+ N YY   LK DR+ ++  + + +  + 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  60   LTDRERCAALFNEVQPDQVVHLAAQAGVRYSIENPHAYVDSNLVGFLNVLELCRHCRVQH  119
            L + +  + +F + QP+ VV+LAAQAGVRYSIENP++Y+DSN+VGF+N+LE  RH  +Q+
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  120  LVYASSSSVYGDSAIPPFSEQQRVDQPRSLYGATKVANEVMAYSYAQLYGLRATGLRFFT  179
            L+YASSSSVYG ++  PFS  + +D+P SLY+ATK +NE+MA +Y++LY L +TGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  180  VYGPWGRPDMAPLIFSRAVMEGRPIEVFNHGRMERDFTFINDIVAGV-------------  226
            VYGPWGRPDMA + F++A++++++I+V+NHG M RDFT+++DIV ++             
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  227  -IGALDAPGEQAVPHRLFNLGNHTPVSLEHFIKVIEQAAGRPADKHYKPMQPGDmmatma  285
              GA   PG    P +++N+GN++PV L +F+  IE+  G+ A K+Y  +QPGD+  T A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  286  diaaaraaFGFEPVTSIEIGMPQVVEWCRHYFDT  319
            ++      ++F P T+I+ G+ + V+W  +Y+  
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

613) Sala_1553 in NC_008048


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  261 bits (977),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 158/332 (48%), Positives = 238/332 (72%), Gaps = 10/332 (3%)

Query  1    MSTLITGAAGFIGMQVAAALLRRGEAVVGIDNFTPYYSVELKRARVARLDAGFGGLFTFI  60
            M  LITG+AGFIG ++A  L+++G+ V+G+D++  YYSV LK  R+  ++      FTF 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE---NFTFN  57

Query  61   dgdfgdaaalagalagQRIDRIVHLGAQPGVRYSLENPAAYVHSNIAGHVNILELARHRA  120
               + +   L+  + +++ + +V+L+AQ+GVRYS+ENP +Y++SNI G +NILE +RH  
Sbjct  58   KVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFN  117

Query  121  VSHLVYASSSSVYGMRADTPFRVADRADTPISLYAATKRADELLSETYAHLFRIPLTGLR  180
            + +L+YASSSSVYG  +  PF  +D  D P+SLYAATK+++EL+++TY+HL+ +P TGLR
Sbjct  118  IQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLR  177

Query  181  FFTVYGPWGRPDMAVWKFTEAVLQGRPIDVYNHGDMRRDFTFVDDIVNGVVLALDHPPAD  240
            FFTVYGPWGRPDMA+ KFT A++++++IDVYNHG+M RDFT+VDDIV+++   L   PA 
Sbjct  178  FFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAIS-RLVKKPAS  236

Query  241  DHRE------KPGGFTTPHRLYNIGNNRSERLTDMIAIIEQACGRKAELNLLPMQAGDVY  294
             ++E       PG+  +P ++YNIGNN + RL + +  IE+  G+ A  N + +Q+GDV 
Sbjct  237  PNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVP  296

Query  295  QTAADIDDIQRDLGFAPTTPISVGIPAFVDWY  326
            +T A++DD+ RD++F P T I  G+  FVDWY
Sbjct  297  ETYANVDDLFRDIDFKPETTIQDGVNKFVDWY  328

614) XOC_4226 in NC_017267


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  261 bits (977),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 152/334 (46%), Positives = 233/334 (70%), Gaps = 15/334 (4%)

Query  1    MTILVTGAAGFIGAYTCRALAARGEAVVGLDNYNRYYDPQLKHDRVAALC-PGVDIRTLD  59
            M IL+TG+AGFIG+   + L  +G+ V+G+D+ N YY   LK+DR+ ++      +  + 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  60   LTDRDGLAALFDETQPKRVVHLAAQAGVRYSLENPSAYVDSNLVGFVNMLELCRHRGVQH  119
            L + D+L+ +F + QP  VV+LAAQAGVRYS+ENP +Y+DSN+VGF+N+LE  RH  +Q+
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  120  LVYASSSSVYGDSATPPFSEDQRVDQPRSLYAATKAANELMGYTYAQLYGLRATGLRFFT  179
            L+YASSSSVYG +++ PFS  + +D+P SLYAATK +NELM+ TY++LY L +TGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  180  VYGPWGRPDMAPLIFSRAVLAGRPIEVFNHGKMQRDFTFVDDIVAGVLGALDTPSS----  235
            VYGPWGRPDMA + F++A++ +++I+V+NHG+M RDFT+VDDIV ++   +  P+S    
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  236  ----EP------VPHRMFNLGNHTPVELEYFIDVIAQAAGRPAEKVYRPMQPGDMIRTMA  285
                +P       P +++N+GN++PV L  F++ I +  G+ A K Y  +QPGD+  T A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  286  DTQRAQAAFGFDPATPVERGLPQVVNWCRQYFGK  319
            + +     ++F P T ++ G+ + V+W  +Y+ K
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

615) XC_3937 in NC_007086


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  261 bits (975),  Expect = 3e-71, Method: Compositional matrix adjust.
 Identities = 149/332 (45%), Positives = 232/332 (70%), Gaps = 15/332 (4%)

Query  1    MTILVTGAAGFIGAYTCRALAARGENVVGLDNYNSYYDPQLKHDRVAALCPQ-IDIRTLD  59
            M IL+TG+AGFIG+   + L  +G+ V+G+D+ N YY   LK+DR+ ++  + + +  + 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  60   LTDREGLAALFDEIQPTRVVHLAAQAGVRYSLENPHAYVDSNLVGFVNVLELCRHRGVQH  119
            L + ++L+ +F + QP  VV+LAAQAGVRYS+ENP++Y+DSN+VGF+N+LE  RH  +Q+
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  120  LVYASSSSVYGDSATPPFSEDQRVDQPRSLYAATKAANELMGYTYAQLYGLRATGLRFFT  179
            L+YASSSSVYG +++ PFS  + +D+P SLYAATK +NELM+ TY++LY L +TGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  180  VYGPWGRPDMAPLIFSRAVLAGRPIEVFNHGKMQRDFTFVADIVAGVLGALDTPST----  235
            VYGPWGRPDMA + F++A++ +++I+V+NHG+M RDFT+V DIV ++   +  P++    
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  236  ----EP------VPHRVFNLGNHTPVELEYFIDVIAQAAGRPAEKVYRPMQPGDMIRTMA  285
                +P       P +V+N+GN++PV L  F++ I +  G+ A K Y  +QPGD+  T A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  286  DTSRAQAAFGFDPATPVELGLPQVVEWCQRYF  317
            +       ++F P T ++ G+ + V+W   Y+
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

616) wbnF in NC_003902


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  261 bits (975),  Expect = 3e-71, Method: Compositional matrix adjust.
 Identities = 149/332 (45%), Positives = 232/332 (70%), Gaps = 15/332 (4%)

Query  1    MTILVTGAAGFIGAYTCRALAARGENVVGLDNYNSYYDPQLKHDRVAALCPQ-IDIRTLD  59
            M IL+TG+AGFIG+   + L  +G+ V+G+D+ N YY   LK+DR+ ++  + + +  + 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  60   LTDREGLAALFDEIQPTRVVHLAAQAGVRYSLENPHAYVDSNLVGFVNVLELCRHRGVQH  119
            L + ++L+ +F + QP  VV+LAAQAGVRYS+ENP++Y+DSN+VGF+N+LE  RH  +Q+
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  120  LVYASSSSVYGDSATPPFSEDQRVDQPRSLYAATKAANELMGYTYAQLYGLRATGLRFFT  179
            L+YASSSSVYG +++ PFS  + +D+P SLYAATK +NELM+ TY++LY L +TGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  180  VYGPWGRPDMAPLIFSRAVLAGRPIEVFNHGKMQRDFTFVADIVAGVLGALDTPST----  235
            VYGPWGRPDMA + F++A++ +++I+V+NHG+M RDFT+V DIV ++   +  P++    
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  236  ----EP------VPHRVFNLGNHTPVELEYFIDVIAQAAGRPAEKVYRPMQPGDMIRTMA  285
                +P       P +V+N+GN++PV L  F++ I +  G+ A K Y  +QPGD+  T A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  286  DTSRAQAAFGFDPATPVELGLPQVVEWCQRYF  317
            +       ++F P T ++ G+ + V+W   Y+
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

617) BafPKo_0455 in NC_017238


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  261 bits (974),  Expect = 4e-71, Method: Compositional matrix adjust.
 Identities = 154/346 (45%), Positives = 248/346 (72%), Gaps = 18/346 (5%)

Query  1    MKIFLTGIAGFIGFHVAKKLVEKGHEVLGIDILNDYYDLKFKHERLEALGFCSKGVKTDK  60
            MKI++TG AGFIG H+AKKL+ +GH V+G+D +NDYY + +K++RL ++G   K   T +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG---KENFTFN  57

Query  61   IIKSEKYNNLSFAYLDILNKDKLLELFKEYKFTHVCHLAAQAGIRDSLENPDSYVSINIV  120
             +K E+Y++LS  ++D                  V +LAAQAG+R S+ENP +Y+  NIV
Sbjct  58   KVKLENYDDLSKVFVDEQPE-------------VVVNLAAQAGVRYSIENPRTYIDSNIV  104

Query  121  GFFNVLDVCRVCKENIKHFVYASTSSVYGINENIPSNEDSSTDHPLNLYAASKKSNEMIA  180
            GF N+L+  R    NI++++YAS+SSVYG N + P +   + DHPL+LYAA+KKSNE++A
Sbjct  105  GFMNILECSRHF--NIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMA  162

Query  181  HAYSASFNIPTTGLRFFTVYGTYGRPDMALYLFSDGIKNGESINIFNNGNMARDFTYVSD  240
            H+YS  +N+PTTGLRFFTVYG  GRPDMAL+ F+ +I N+++I+++N+GNM RDFTYV D
Sbjct  163  HTYSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDD  222

Query  241  IANGVYKVLKNPARSDCNFDVKNPNSSTSSFPYRIYNIGTGHATKLLDFIEELEANFDKK  300
            I +++ +++K+PA ++ +    +P++++S  PY++YNIG   + +L++F+E +E +++K 
Sbjct  223  IVEAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKE  282

Query  301  ALKNYMPMQKADVVESCCDILKLKNDVGYEAKISIKEGIKEFSQWY  346
            A KNYM +Q +DV E+  ++  L  D+++ +  +I++G++ F +WY
Sbjct  283  ARKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWY  328

618) BG0452 in NC_006156


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  261 bits (975),  Expect = 4e-71, Method: Compositional matrix adjust.
 Identities = 154/346 (45%), Positives = 246/346 (72%), Gaps = 18/346 (5%)

Query  1    MKIFLTGIAGFIGFHVAKKLVEEGHEVLGVDILNDYYELKFKNERLEALGFCPKDVKTHK  60
            MKI++TG AGFIG H+AKKL+ +GH V+GVD +NDYY + +K++RL ++G   K+  T +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG---KENFTFN  57

Query  61   IIKSKKYNNLSFAYldilnkdkllklfkEYKFTHVCHLAAQAGIRDSLENPDSYVSINIV  120
             +K  +Y++LS  ++D                  V +LAAQAG+R S+ENP +Y+  NIV
Sbjct  58   KVKLENYDDLSKVFVDEQPEV-------------VVNLAAQAGVRYSIENPRTYIDSNIV  104

Query  121  GFFNVLDVCRVYKENIKHFVYASTSSVYGINENIPSSEDSITDHPLNLYAASKKSNEMIA  180
            GF N+L+  R +  NI++++YAS+SSVYG N + P S     DHPL+LYAA+KKSNE++A
Sbjct  105  GFMNILECSRHF--NIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMA  162

Query  181  HAYSASFNIPTTGLRFFTVYGTYGRPDMALYLFSDGIKNCEPINIFNNGNMARDFTYVSD  240
            H+YS  +N+PTTGLRFFTVYG  GRPDMAL+ F+ +I N ++I+++N+GNM RDFTYV D
Sbjct  163  HTYSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDD  222

Query  241  IANGVYKVLKNPAKSDCNFDVKNPNSSTSSFPYRIYNIGTGHATKLLDFIRELEANFDKK  300
            I +++ +++K+PA ++ +    +P++++S  PY++YNIG   + +L++F+  +E +++K 
Sbjct  223  IVEAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKE  282

Query  301  ALKNYMPMQKADVVESCCDIVKLKNDVGYEAKISIKEGIKEFSQWY  346
            A KNYM +Q +DV E+  ++  L  D+++ +  +I++G++ F +WY
Sbjct  283  ARKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWY  328

619) XCR_0436 in NC_017271


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  261 bits (974),  Expect = 4e-71, Method: Compositional matrix adjust.
 Identities = 149/332 (45%), Positives = 232/332 (70%), Gaps = 15/332 (4%)

Query  1    MTILVTGAAGFIGAYTCRALAARGENVVGLDNYNSYYDPQLKHDRVAALCPQ-IDIRMLD  59
            M IL+TG+AGFIG+   + L  +G+ V+G+D+ N YY   LK+DR+ ++  + + +  + 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  60   LTDREGLAALFDEIQPTRVVHLAAQAGVRYSLENPHAYVDSNLVGFVNMLELCRHRGVQH  119
            L + ++L+ +F + QP  VV+LAAQAGVRYS+ENP++Y+DSN+VGF+N+LE  RH  +Q+
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  120  LVYASSSSVYGDSATPPFSEDQRVDQPRSLYAATKAANELMGYTYAQLYGLRATGLRFFT  179
            L+YASSSSVYG +++ PFS  + +D+P SLYAATK +NELM+ TY++LY L +TGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  180  VYGPWGRPDMAPLIFSRAVLAGRPIEVFNHGKMQRDFTFVADIVAGVLGALDTPST----  235
            VYGPWGRPDMA + F++A++ +++I+V+NHG+M RDFT+V DIV ++   +  P++    
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  236  ----EP------VPHRVFNLGNHTPVELEYFIDVIAQAAGRPAEKVYRPMQPGDMVRTMA  285
                +P       P +V+N+GN++PV L  F++ I +  G+ A K Y  +QPGD+  T A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  286  DTSRAQAAFGFDPATPVELGLPQVVEWCQRYF  317
            +       ++F P T ++ G+ + V+W   Y+
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

620) M446_3211 in NC_010511


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  260 bits (970),  Expect = 1e-70, Method: Compositional matrix adjust.
 Identities = 150/335 (45%), Positives = 245/335 (74%), Gaps = 5/335 (1%)

Query  1    MHCVVTGAAGFIGFHLARRLLADGHRVTGIDGLTDYYDVGLKRARLRALEGPGFANHVGL  60
            M  ++TG+AGFIG HLA++L+ +GH V G+D++ DYY V+LK  RL+++    F+ +   
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  61   LEEPGFFARVMDQARPDILVHLAAQAGVRYSLENPASYVAANVVGTFEVLEGLRAHPVRH  120
            LE+ + +++V  + +P+++V+LAAQAGVRYS+ENP +Y+ +N+VG  ++LE  R   +++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  121  ALLASTSSVYGGNDRVPFRETDPVARPVSLYAASKVAGESMAHAYAHLWRIPTTAFRFFT  180
             + AS+SSVYG+N   PF  +D + +P+SLYAA+K + E MAH+Y+HL  +PTT++RFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  181  VYGPWGRPDMAVFVFTKRILAGEPVEVFDHGRAARDFTYIDDLIESIVRLIDRPPGGA--  238
            VYGPWGRPDMA+F FTK I+ +++++V++HG   RDFTY+DD++E+I RL+ +P++    
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  239  -PVSESDSLSPVAPFRVVNIGGGNPATVSDLLDGleaalgrratrllrdlPPGDVPLTQA  297
             + +++D+ S+ AP++V NIG  +P  + ++++++E  LG+ A +   DL PGDVP T A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  298  ET-GLLRDLIGYAPATPLREGVAAFVDWYRAYHAN  331
            +  +L+RD I++ P T +++GV  FVDWY  Y  +
Sbjct  301  NVDDLFRD-IDFKPETTIQDGVNKFVDWYLEYYKK  334

621) XOO_0469 in NC_007705


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  260 bits (971),  Expect = 7e-71, Method: Compositional matrix adjust.
 Identities = 150/334 (45%), Positives = 233/334 (70%), Gaps = 15/334 (4%)

Query  1    MTILVTGAAGFIGAYTCRALAARSEAVVGLDNYNRYYDPQLKHDRVAALC-PGVDIRTLD  59
            M IL+TG+AGFIG+   + L  +++ V+G+D+ N YY   LK+DR+ ++      +  + 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  60   LTDRDGLAALFDEIQPTRVVHLAAQAGVRYSLENPSAYVDSNLVGFVNMLELCRHRGVQH  119
            L + D+L+ +F + QP  VV+LAAQAGVRYS+ENP +Y+DSN+VGF+N+LE  RH  +Q+
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  120  LVYASSSSVYGDSATPPFSEDQRVDQPRSLYAATKAANELMGYTYAQLYGLRATGLRFFT  179
            L+YASSSSVYG +++ PFS  + +D+P SLYAATK +NELM+ TY++LY L +TGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  180  VYGPWGRPDMAPLIFSRAVLAGRPIEVFNHGKMQRDFTFIEDIVAGVLGALDTPSS----  235
            VYGPWGRPDMA + F++A++ +++I+V+NHG+M RDFT+++DIV ++   +  P+S    
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  236  ----EP------VPHRVFNLGNHTPVELEYFIDVIAQAAGRPAEKVYRPMQPGDMIRTMA  285
                +P       P +V+N+GN++PV L  F++ I +  G+ A K Y  +QPGD+  T A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  286  DTQRAQAAFGFDPATPVERGLPQVVNWCRQYFGK  319
            + +     ++F P T ++ G+ + V+W  +Y+ K
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

622) PXO_02926 in NC_010717


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  260 bits (971),  Expect = 7e-71, Method: Compositional matrix adjust.
 Identities = 150/334 (45%), Positives = 233/334 (70%), Gaps = 15/334 (4%)

Query  1    MTILVTGAAGFIGAYTCRALAARSEAVVGLDNYNRYYDPQLKHDRVAALC-PGVDIRTLD  59
            M IL+TG+AGFIG+   + L  +++ V+G+D+ N YY   LK+DR+ ++      +  + 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  60   LTDRDGLAALFDEIQPTRVVHLAAQAGVRYSLENPSAYVDSNLVGFVNMLELCRHRGVQH  119
            L + D+L+ +F + QP  VV+LAAQAGVRYS+ENP +Y+DSN+VGF+N+LE  RH  +Q+
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  120  LVYASSSSVYGDSATPPFSEDQRVDQPRSLYAATKAANELMGYTYAQLYGLRATGLRFFT  179
            L+YASSSSVYG +++ PFS  + +D+P SLYAATK +NELM+ TY++LY L +TGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  180  VYGPWGRPDMAPLIFSRAVLAGRPIEVFNHGKMQRDFTFIEDIVAGVLGALDTPSS----  235
            VYGPWGRPDMA + F++A++ +++I+V+NHG+M RDFT+++DIV ++   +  P+S    
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  236  ----EP------VPHRVFNLGNHTPVELEYFIDVIAQAAGRPAEKVYRPMQPGDMIRTMA  285
                +P       P +V+N+GN++PV L  F++ I +  G+ A K Y  +QPGD+  T A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  286  DTQRAQAAFGFDPATPVERGLPQVVNWCRQYFGK  319
            + +     ++F P T ++ G+ + V+W  +Y+ K
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

623) wbnF in NC_006834


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  260 bits (970),  Expect = 9e-71, Method: Compositional matrix adjust.
 Identities = 152/334 (46%), Positives = 233/334 (70%), Gaps = 15/334 (4%)

Query  24   MTILITGAAGFIGAYTCRALAARSEAVVGLDNYNRYYDPQLKHDRVAALC-PGVDIRTLD  82
            M ILITG+AGFIG+   + L  +++ V+G+D+ N YY   LK+DR+ ++      +  + 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  83   LTDRDGLAALFDEIQPTRVVHLAAQAGVRYSLENPSAYVDSNLVGFVNMLELCRHRGVQH  142
            L + D+L+ +F + QP  VV+LAAQAGVRYS+ENP +Y+DSN+VGF+N+LE  RH  +Q+
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  143  LVYASSSSVYGDSATPPFSEDQRVDQPRSLYAATKAANELMGYTYAQLYGLRATGLRFFT  202
            L+YASSSSVYG +++ PFS  + +D+P SLYAATK +NELM+ TY++LY L +TGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  203  VYGPWGRPDMAPLIFSRAVLAGRPIEVFNHGKMQRDFTFVEDIVAGVLGALDTPSS----  258
            VYGPWGRPDMA + F++A++ +++I+V+NHG+M RDFT+V+DIV ++   +  P+S    
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  259  ----EP------VPHRVFNLGNHTPVELEYFIDVIAQAAGRPAEKVYRPMQPGDMIRTMA  308
                +P       P +V+N+GN++PV L  F++ I +  G+ A K Y  +QPGD+  T A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  309  DTQRAQAAFGFDPATPVERGLPQVVNWCRQYFGK  342
            + +     ++F P T ++ G+ + V+W  +Y+ K
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

624) gla in NC_010688


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  259 bits (969),  Expect = 1e-70, Method: Compositional matrix adjust.
 Identities = 151/332 (46%), Positives = 229/332 (69%), Gaps = 15/332 (4%)

Query  1    MTILVTGAAGFIGAYTCRALAARGENVVGLDNYNSYYDPQLKHDRVAALCPQ-IDIRTLD  59
            M IL+TG+AGFIG+   + L  +G+ V+G+D+ N YY   LK+DR+ ++  + + +  + 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  60   LTDRAGLAALFDEIQPTRVVHLAAQAGVRYSLENPSAYVDSNLVGFVNVLELCRHRGVQH  119
            L +  +L+ +F + QP  VV+LAAQAGVRYS+ENP +Y+DSN+VGF+N+LE  RH  +Q+
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  120  LVYASSSSVYGDSATPPFSEDQRVDQPRSLYAATKAANELMGYTYAQLYGLRATGLRFFT  179
            L+YASSSSVYG +++ PFS  + +D+P SLYAATK +NELM+ TY++LY L +TGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  180  VYGPWGRPDMAPLIFSRAVLAGRPIEVFNHGKMQRDFTFVADIVAGV-------------  226
            VYGPWGRPDMA + F++A++ +++I+V+NHG+M RDFT+V DIV ++             
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  227  -LGALDAPSSEPVPHRVFNLGNHTPVELEYFIDVIAQAAGRPAEKVYRPMQPGDMVRTMA  285
              GA   P+S   P +V+N+GN++PV L  F++ I +  G+ A K Y  +QPGD+  T A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  286  DTSRAQAAFGFDPATPVELGLPQVVEWCHRYF  317
            +       ++F P T ++ G+ + V+W   Y+
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

625) Zymop_0327 in NC_015709


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  259 bits (968),  Expect = 1e-70, Method: Compositional matrix adjust.
 Identities = 153/338 (46%), Positives = 237/338 (71%), Gaps = 10/338 (2%)

Query  1    MAILITGVAGFIGSYTAKALLEKGKKVIGIDNLNNYYDPALKKARLLQLDKITSGSFQFY  60
            M ILITG AGFIGS  AK L+ +G  VIG+D++N+YY  +LK  RL     I   +F F 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRL---KSIGKENFTFN  57

Query  61   KADFSEAQRLNEILKEHDFDQIIHFGAQAGVRYSLINPKAYGESNLMGHLNILELARHRA  120
            K  + + + L+ ++ +++ + +++++AQAGVRYS+ NP++Y +SN++G +NILE +RH  
Sbjct  58   KVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFN  117

Query  121  IAHMVYASSSSVYGNRSLLPFKVESQPDYPVSLYAATKRAGEMMSESYAYLYRMPLTGLR  180
            I +++YASSSSVYG  +  PF    + D P+SLYAATK++ E+M+++Y+ LY +P TGLR
Sbjct  118  IQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLR  177

Query  181  FFTVYGPWGRPDMAMWIFTQSILNHQPIMLFNHGDMQRDFTYIDDIVSGVLGVLAHPPVD  240
            FFTVYGPWGRPDMA+  FT++I+N+Q+I ++NHG+M RDFTY+DDIV ++ + L   P  
Sbjct  178  FFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAI-SRLVKKPAS  236

Query  241  DGKE------KAGGSINPHSLYNIGNNRPEKLQDMVKLLEQACQRKAIKELRPMQAGDVY  294
              KE       +G+S  P  +YNIGNN P +L + V  +E+   + A K+   +Q+GDV 
Sbjct  237  PNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVP  296

Query  295  ATYADITAIKQDIGFEPQTSLKDGIPRFVEWFCHYHDR  332
             TYA++  + +DI+F P+T+++DG+ +FV+W+ +Y  +
Sbjct  297  ETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

626) PB2503_07222 in NC_014414


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  259 bits (968),  Expect = 1e-70, Method: Compositional matrix adjust.
 Identities = 146/330 (45%), Positives = 231/330 (70%), Gaps = 15/330 (4%)

Query  1    MRVLVTGAAGFIGSYTCHALLDRGWTVTGVDCLNAYYDPALKQDRLRFLEARDGFTFTKV  60
            M++L+TG+AGFIGS     L+ +G  V GVD +N YY  +LK+DRL+ + +++ FTF KV
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  61   DLSDAAAVANI--GSAFDIVIHLAAQAGVRYSLENPLSYVDSNVRAHLNVLELVRHAETP  118
             L +   ++++  +   ++V++LAAQAGVRYS+ENP +Y+DSN+ + +N+LE  RH +  
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  119  PFLIYASSSSVYGDTTPAPFQETARADQPVSLYAATKRSCELLSESYTAVFDLAQVGLRF  178
              LIYASSSSVYG  T+ PF  +   D+P+SLYAATK+S EL++++Y+ +++L+  GLRF
Sbjct  120  N-LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRF  178

Query  179  FTVYGPWGRPDMAYWSFAERMAKGEPIDVFNNGKLGRDFTWIDDVIDGIVRI--------  230
            FTVYGPWGRPDMA   F+  + ++++IDV+N+G++ RDFT +DD++++I R+        
Sbjct  179  FTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPN  238

Query  231  ---AEGGPTPGEARGRHRVYNIGNSRPEPLMHFIEVLERAMGMTATKVMLPMQPGDVHQT  287
               + ++P PG + +  +VYNIGN+ P  LM+F+E +E  +G  A K  + +QPGDV +T
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPET  298

Query  288  AADTGHLAEDYGFAATTSIETGLPIFADWF  317
             A+ ++L  D +F + T+I+ G+  F DW+
Sbjct  299  YANVDDLFRDIDFKPETTIQDGVNKFVDWY  328

627) AZL_021990 in NC_013854


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  258 bits (965),  Expect = 2e-70, Method: Compositional matrix adjust.
 Identities = 159/335 (48%), Positives = 237/335 (71%), Gaps = 15/335 (4%)

Query  1    MTILVTGAAGFIGSHVAAALLDRGEQVLGIDNLNDYYAVPLKEARLARLTGRPGFRFLKA  60
            M IL+TG+AGFIGSH+A  L+ +G+ V+G+D++NDYY+V+LKE RL  + G+  F F K 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  61   DVADRATVEGLWPRFDDVTGVVHLAAQPGVRYSIENPYAYVDANVTGQVTLLEAARRMPG  120
             + +   +  +    ++   VV+LAAQ+GVRYSIENP +Y+D+N+ G + +LE +R+   
Sbjct  60   KLENYDDLSKVFVD-EQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHF-N  117

Query  121  LRHFVYASTSSVYGANRKMPFSVEDRVDSPVSVYAATKKAAEMLAFTYSHLYQLPMTGLR  180
            +++++YAS+SSVYGAN   PFS  D +D P+S+YAATKK+ E++A TYSHLY+LP TGLR
Sbjct  118  IQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLR  177

Query  181  FFTVYGPWSRPDMATWLFADAIAAGRPIRVFNGGKMKRDFTYIDDIVAGVLAALDRPAP-  239
            FFTVYGPW+RPDMA   F+ AI  +++I V+N G+M RDFTY+DDIV ++   + +PA+ 
Sbjct  178  FFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASP  237

Query  240  ------VDAETG---APHRVFNLGNNRCEELMRFITVLEQAFGREAVKVMEPMQAGDVQE  290
                   D++ G   AP +V+N+GNN    LM F+  +E+ +G+EA K    +Q+GDV E
Sbjct  238  NKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPE  297

Query  291  TAADI-ELSRQVLGFEPKTPIETGLPRFVEWYKGY  324
            T A++ +L R++ +F P T I+ G+ +FV+WY  Y
Sbjct  298  TYANVDDLFRDI-DFKPETTIQDGVNKFVDWYLEY  331

628) MmarC5_0496 in NC_009135


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  258 bits (965),  Expect = 2e-70, Method: Compositional matrix adjust.
 Identities = 158/334 (48%), Positives = 235/334 (71%), Gaps = 21/334 (6%)

Query  1    MKILVTGAAGFIGYSLCKNLLDENIESLVGIDNLNSYYDPILKEKRLDMLnkfsknnfkf  60
            MKIL+TG+AGFIG  L K+L+ +  + ++G+D++N YY   LKE RL  + K +      
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQG-HYVIGVDSINDYYSVSLKEDRLKSIGKENFTFN--  57

Query  61   YKIDLDNFKELEDIFSKEMPDLIVHLAAQAGVRYSLENPWAYEYSNNIGTLNIFEIAKKY  120
             K+ L+N+ +L  +F  E P+++V+LAAQAGVRYS+ENP++Y  SN +G +NI+E ++ +
Sbjct  58   -KVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHF  116

Query  121  NIKKIVFASSSSVYGGNQKIPFSERDNVGKPVSIYAATKKYNELLAHVYHHLYDMEMVGL  180
            NI+++++ASSSSVYG+N   PFS  DN++ P+S+YAATKK NEL+AH Y HLY++   GL
Sbjct  117  NIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGL  176

Query  181  RFFTVYGEFGRPDMAYWKFTKKILNGEQIDIYNFGDMNRDFTYISDIVEGIKNAINTPN-  239
            RFFTVYG  GRPDMA  KFTK I+N++ ID+YN G+M RDFTY+ DIVE+I   ++ P  
Sbjct  177  RFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPAS  236

Query  240  ----------------LGYNIFNLGGDNPVNLEYMINLIEKELGINAIKNYMPIQPGDVP  283
                              Y+++N+G ++PV L   ++ IE+ LG +A KNYM +QPGDVP
Sbjct  237  PNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVP  296

Query  284  VTMADLEKSKKMINYRPKVSIEEGIQKFVNWYLE  317
             T A+++   + I+++P  +I++G++KFV+WYLE
Sbjct  297  ETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLE  330

629) AZOLI_2265 in NC_016622


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  258 bits (964),  Expect = 2e-70, Method: Compositional matrix adjust.
 Identities = 158/337 (47%), Positives = 237/337 (71%), Gaps = 15/337 (4%)

Query  1    MTILVTGAAGFIGSHVAAALLDRGESVLGLDNLNDYYAVALKEARLARLTGRPGFRFVKA  60
            M IL+TG+AGFIGSH+A  L+ +G+ V+G+D++NDYY+V+LKE RL  + G+  F F K 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  61   DISDRSTVEGLWPQLKDVTGVVHLAAQPGVRYSIENPYAYVDANVTGQVTLLEAARRMPG  120
             + +   +  +  +  +   VV+LAAQ+GVRYSIENP +Y+D+N+ G + +LE +R+   
Sbjct  60   KLENYDDLSKVFVD-EQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHF-N  117

Query  121  LRHFVYASTSSVYGANRKMPFSVEDRVDSPVSVYAATKKAAEMLAFTYSHLYRMPMTGLR  180
            +++++YAS+SSVYGAN   PFS  D +D P+S+YAATKK+ E++A TYSHLY +P TGLR
Sbjct  118  IQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLR  177

Query  181  FFTVYGPWSRPDMATWLFADAITAGRPIRVFNGGKMKRDFTFIDDIVAGVLAALDRPAP-  239
            FFTVYGPW+RPDMA   F+ AI  +++I V+N G+M RDFT++DDIV ++   + +PA+ 
Sbjct  178  FFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASP  237

Query  240  ------VDAETG---APHRVFNLGNNRCEELMRFIGVLEQAFGREAVKVMEPMQAGDVQE  290
                   D++ G   AP +V+N+GNN    LM F+  +E+ +G+EA K    +Q+GDV E
Sbjct  238  NKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPE  297

Query  291  TAADI-ELSRQVLGFEPKTPIEIGLPRFVEWYKGYHK  326
            T A++ +L R++ +F P T I+ G+ +FV+WY  Y K
Sbjct  298  TYANVDDLFRDI-DFKPETTIQDGVNKFVDWYLEYYK  333

630) Xfasm12_1471 in NC_010513


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  256 bits (956),  Expect = 1e-69, Method: Compositional matrix adjust.
 Identities = 147/334 (45%), Positives = 232/334 (70%), Gaps = 15/334 (4%)

Query  1    MTVLVTGAAGFIGAHVCRVLAARNDTVVGLDNYNAYYDPQLKRDRVTALCPDV-HIRTLD  59
            M +L+TG+AGFIG+H+ + L  + + V+G+D+ N YY   LK DR+ ++  +   +  + 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  60   LTDRERCAALFNEVQPDRVVHLAAQAGVRYSIENPHAYVDSNLVGFLNVLELCRHCRVQH  119
            L + +  + +F + QP+ VV+LAAQAGVRYSIENP++Y+DSN+VGF+N+LE  RH  +Q+
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  120  LVYASSSSVYGDSAIPPFSEQQRVDQPRSLYGATKVANEVMAYSYAQLYGLRATGLRFFT  179
            L+YASSSSVYG ++  PFS  + +D+P SLY+ATK +NE+MA +Y++LY L +TGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  180  VYGPWGRPDMAPLIFSRAVLEGRPIEVFNHGRMERDFTFINDIVAGV-------------  226
            VYGPWGRPDMA + F++A++++++I+V+NHG M RDFT+++DIV ++             
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  227  -IGALDAPGEQAVPHRLFNLGNHTPVSLEHFIKVIEQAAGRPADKHYKPMQLGDmmatma  285
              GA   PG    P +++N+GN++PV L +F+  IE+  G+ A K+Y  +Q GD+  T A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  286  diaaaraaFGFEPVTSIEIGMPQVVEWCRHYFDT  319
            ++      ++F P T+I+ G+ + V+W  +Y+  
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

631) XF2279 in NC_002488


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  256 bits (958),  Expect = 8e-70, Method: Compositional matrix adjust.
 Identities = 147/333 (45%), Positives = 234/333 (71%), Gaps = 15/333 (4%)

Query  20   MTVLVTGAAGFIGAHVCRALAARNDTVVGLDNYNAYYDPQLKRDRVTALCPDV-HIRTLD  78
            M +L+TG+AGFIG+H+ + L  + + V+G+D+ N YY   LK DR+ ++  +   +  + 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  79   LTDRERCAALFNEVQPDQVVHLAAQAGVRYSIENPHAYVDSNLVGFLNVLELCRHCRVQH  138
            L + +  + +F + QP+ VV+LAAQAGVRYSIENP++Y+DSN+VGF+N+LE  RH  +Q+
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  139  LVYASSSSVYGDSATPPFSEQQRVDQPRSLYGATKVANEVMAYSYAQLYGLRATGLRFFT  198
            L+YASSSSVYG +++ PFS  + +D+P SLY+ATK +NE+MA +Y++LY L +TGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  199  VYGPWGRPDMAPLIFSRAVLEGRPIEVFNHGRMERDFTFINDIVAGV-------------  245
            VYGPWGRPDMA + F++A++++++I+V+NHG M RDFT+++DIV ++             
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  246  -IGALDAPGEQAVPHRLFNLGNHTPVPLEHFINVIEQAAGRPADKHYKPMQLGDmmatma  304
              GA   PG    P +++N+GN++PV L +F++ IE+  G+ A K+Y  +Q GD+  T A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  305  diaaaraaFGFEPVTSIEIGMPQVVEWCRHYFD  337
            ++      ++F P T+I+ G+ + V+W  +Y+ 
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

632) BurJV3_4007 in NC_015947


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  255 bits (952),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 152/332 (46%), Positives = 230/332 (70%), Gaps = 15/332 (4%)

Query  1    MTILLTGAAGFIGAYTARALLEAGQPVVGLDNFNDYYDPQIKRDRVAALCPAldlrtldl  60
            M IL+TG+AGFIG+  A+ L+  G+ V+G+D++NDYY   +K DR+ ++           
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  61   tdr-EGLAALFDEVKPTAVIHLAAQAGVRYSLENPHAYVDSNLVGFVNMLELCRHRGVQH  119
             +  ++L+ +F + +P  V++LAAQAGVRYS+ENP++Y+DSN+VGF+N+LE  RH  +Q+
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  120  LVYASSSSVYGDSATPPFSEDQRVDQPRSLYAATKAANELMAYTYAQLYGLHATGLRFFT  179
            L+YASSSSVYG +++ PFS  + +D+P SLYAATK +NELMA TY++LY L +TGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  180  VYGPWGRPDMAPLLFSRAVLAGRPIDVFNEGRMQRDFTHVSDIVSGI-------------  226
            VYGPWGRPDMA + F++A++ +++IDV+N+G M RDFT V DIV +I             
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  227  -LGALAHPADGPVPHRVFNLGNHTPVELERFISVIEQAAGRPAQKVYKPMQPGDMVRTMA  285
              GA ++P+ +  P +V+N+GN++PV L  F+  IE+  G+ A+K Y  +QPGD+  T A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  286  DTRRAHDAFGFDAVTPIEEGLPPVVQWCREYF  317
            +       ++F + T I++G+   V+W  EY+
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

633) Mmar10_2492 in NC_008347


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  255 bits (951),  Expect = 3e-69, Method: Compositional matrix adjust.
 Identities = 141/331 (43%), Positives = 222/331 (68%), Gaps = 18/331 (5%)

Query  1    MTSFVTGAAGFIGFHAARAQLEAGEDVVGIDNLNPYYDPKLKQARLDQLTRYPGFRFEAI  60
            M  ++TG+AGFIG H A+  +  G+ V+G+D++N YY   LK+ RL  + +   F F+ +
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DLADHEAVAGLVADVRPQRILHLGAQAGVRYSLEAPFAYARSNLTGHLSVLEAARALGDR  120
             L + + ++ +  D +P+ +++L+AQAGVRYS+E P +Y  SN+ G +++LE +R +   
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFN--  117

Query  121  LEHLVYASSSSVYGERSAVPFKECDAAESPASLYAATKRSDELMSASYCSLYGIPATGLR  180
            +++L+YASSSSVYG  ++ PF   D  + P SLYAATK+S+ELM+ +Y  LY +P+TGLR
Sbjct  118  IQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLR  177

Query  181  FFTVYGPWGRPDMAYWLFADAMLAGRPIQVFNNGNMERDFTYIDDIVEALSRILADSPAR  240
            FFTVYGPWGRPDMA   F+ A++ +++I+V+N+GNM RDFTY+DDIVEA+SR++  +++ 
Sbjct  178  FFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASP  237

Query  241  GRH---------------AIYNIGGSSPVRLLDMIETLETELGVVADKVMLPMQPGDVTR  285
             ++                +YNIG +SPVRL++ +E++E  LG  A K  + +QPGDV  
Sbjct  238  NKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPE  297

Query  286  TFADTSRLEADYGFRPSVDLATGLAGFATWF  316
            T+A+   L  D +F+P   +  G+  F  W+
Sbjct  298  TYANVDDLFRDIDFKPETTIQDGVNKFVDWY  328

634) gAE4 in NC_015702


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  254 bits (950),  Expect = 3e-69, Method: Compositional matrix adjust.
 Identities = 157/332 (48%), Positives = 226/332 (69%), Gaps = 20/332 (6%)

Query  8    NIIVTGAAGFIGFHTTLALAQRGDHVIGYDNFNDYYSPQLKRDRCELLKKAGIEVVEGDI  67
            +I++TG+AGFIG H +  L ++G+ VIG D++NDYYS  LK DR   + K  +      +
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVKL  61

Query  68   CDTSKLKQCVRANQATHFVNLAAQAGVRYSLTNPQSYVKSNLEGFVSVLEICKDHPGI-S  126
             +   L +    +Q+   VNLAAQAGVRYS+ NP++Y+ SN+ GF+++LE C  H  I +
Sbjct  62   ENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILE-CSRHFNIQN  120

Query  127  LVYASSSSVYGLNRKIPFSIEDRTDQQASLYGATKKANELFAQTYHHLYXIPVTGLRFFT  186
            L+YASSSSVYG N   PFS  D  D+  SLY+ATKK+NEL A+TY HLY +P TGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  187  VYGPWGRPDMAYSLFTKAILSGEPIEIYNYGKMQRDFTYVDDIVSGILAAIDRE------  240
            VYGPWGRPDMA   FTKAI+++++I++YN G+M RDFTYVDDIV +I   + +       
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  241  ------------AQCDLFNLGHHEPVELLEFIRTLEEYLGRTATKIFKELQPGDVPETFA  288
                        A   ++N+G++ PV L+EF+ ++E+ LG+ A K + +LQPGDVPET+A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  289  DIRESTRHLNFVPKVGMREGLAKFLDWYRDYY  320
            ++ +  R+++F P   +++G+ KF+DWY +YY
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

635) SELR_17160 in NC_017068


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  253 bits (945),  Expect = 1e-68, Method: Compositional matrix adjust.
 Identities = 167/352 (48%), Positives = 246/352 (70%), Gaps = 25/352 (7%)

Query  14   KNILVTGAAGFIGSYLVQRLLQETTGATIIGIDCLTDYNPIELKEWRLAQVEKAAKDSAS  73
             +IL+TG+AGFIGS L ++L+++  G  +IG+D + DY ++ LKE RL  + K       
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQ--GHYVIGVDSINDYYSVSLKEDRLKSIGKEN-----  53

Query  74   AWKFIKGDIADKDLIDSLFDEYKFAVVVNLAAQAGVRYSIDHPETYIHSNLIGFYNLLEA  133
               F K  + + D +  +F + +  VVVNLAAQAGVRYSI++P TYI+SN++GF N+LE 
Sbjct  54   -FTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILEC  112

Query  134  ARHDEAMEHFVYASSSSVYGGNKKIPFSTDDKVDNPVSLYAATKKSNELMAHSYSKLYNF  193
            +RH + +++++YASSSSVYG+N   PFST D++D+P+SLYAATKKSNELMAH+YS LYN+
Sbjct  113  SRHFN-IQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNL  171

Query  194  PTTGLRFFTVYGPAGRTDMFYFSATNNLKAGKTIKIFNYGNCKRDFTYIDDIVEGVYRVM  253
            PTTGLRFFTVYGP GR DM  F  T+ +  +++I ++N GN  RDFTY+DDIVE++ R++
Sbjct  172  PTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLV  231

Query  254  K--GAPKKE----TGEDGLPIPPYAVYNIGGGTPENLLDYIDTLQHALVDNGVLPQDYDF  307
            K  ++P+KE      + G + +PY VYNIG  +P  L+++++++++ L            
Sbjct  232  KKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGK----------  281

Query  308  EAHKELAPMQPGDVPVTYADSQALERDYDFRPAIDIKQGLNSFAAWYRGFYN  359
            EA+K+   +QPGDVP TYA+ + L RD DF+P   I++G+N F  WY  +Y+
Sbjct  282  EARKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYK  333

636) galE3 in NC_017030


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  253 bits (944),  Expect = 1e-68, Method: Compositional matrix adjust.
 Identities = 136/333 (41%), Positives = 220/333 (67%), Gaps = 16/333 (4%)

Query  1    MRVLVTGAAGFIGAHVCERLLSRGDTVVGLDALDAAPGDVALRRSRLQRLSGARGFTFLA  60
            M++L+TG+AGFIG+H+  +L+ +G+ V+G+D+++   + V+L+  RL+ + G   FTF  
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYS-VSLKEDRLKSI-GKENFTFNK  58

Query  61   GDITDAARLGEAFSAARPEGVVHLAARVGVRAPDAEAPAYADTNVTGFVRVLEACREARV  120
              + +   L+  F   +PE VV+LAA+ GVR +  ++ +Y D+N+ GF+ +LE  R+  +
Sbjct  59   VKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNI  118

Query  121  QHLVYAssssVYGAATPAPFREDAPVDQPLNLYGATKRANELMAHAYSHLHRLPTSGLRF  180
            Q+L+YASSSSVYGA T+ PF     +D+PL+LY+ATK++NELMAH+YSHL  LPT+GLRF
Sbjct  119  QNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRF  178

Query  181  FTVYGPWGRPDMAPLLFLRALAKGEPLRLHGDGRMRRDFTFVDDVAEAVLRVLDRPPSGS  240
            FTVYGPWGRPDMA + F +A+ +++++ +  +G M RDFT+VDD+ EA+ R++ +P+S +
Sbjct  179  FTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPN  238

Query  241  --------------PPHRLLNVGHGEPVALGDFVGLLERHWGTKARVTSVPSAPAEMVST  286
                          +P ++ N+G+  PV L +FV  +E   G  AR   +   P+++  T
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPET  298

Query  287  WADTSRLEAVTGFRPRVSVDAGVARLVAWYREW  319
             A+   L    +F+P  +++ GV ++V WY E 
Sbjct  299  YANVDDLFRDIDFKPETTIQDGVNKFVDWYLEY  331

637) Smal_3963 in NC_011071


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  252 bits (942),  Expect = 1e-68, Method: Compositional matrix adjust.
 Identities = 150/332 (46%), Positives = 230/332 (70%), Gaps = 15/332 (4%)

Query  1    MTILLTGAAGFIGAYTARALLEADQSVVGLDNFNDYYDPQIKRDRVAALCPtldlrtldl  60
            M IL+TG+AGFIG+  A+ L+  ++ V+G+D++NDYY   +K DR+ ++           
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  61   tdQ-QGLAALFDEVKPTAVIHLAAQAGVRYSLENPQAYVDSNLIGFVNMLELCRHRGVQH  119
             ++ ++L+ +F + +P  V++LAAQAGVRYS+ENP++Y+DSN++GF+N+LE  RH  +Q+
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  120  LVYASSSSVYGDSATPPFSEDQRVDQPRSLYAATKAANELMAYTYAQLYGLHATGLRFFT  179
            L+YASSSSVYG +++ PFS  + +D+P SLYAATK +NELMA TY++LY L +TGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  180  VYGPWGRPDMAPLLFSRAVLAGRPIDVFNEGRMQRDFTHVSDIVAGI-------------  226
            VYGPWGRPDMA + F++A++ +++IDV+N+G M RDFT V DIV +I             
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  227  -LGALAHPADGPVPHRVFNLGNHTPVELERFISVIEQAAGRPAQKVYKPMQPGDMVRTMA  285
              GA ++P+ +  P +V+N+GN++PV L  F+  IE+  G+ A+K Y  +QPGD+  T A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  286  DTRRAHDAFGFDAVTPIEAGLPPVVQWCREYF  317
            +       ++F + T I+ G+   V+W  EY+
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

638) Metok_0054 in NC_015636


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  251 bits (937),  Expect = 4e-68, Method: Compositional matrix adjust.
 Identities = 160/334 (48%), Positives = 239/334 (72%), Gaps = 25/334 (7%)

Query  5    NILITGSAGFIGFHLSKYLL--ENYNDIQIIGIDNLNNYYNPILKEKRNDILKNYENYNF  62
            +ILITG+AGFIG HL+K L+   +Y    +IG+D++N+YY+  LKE R   + + EN+ F
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHY----VIGVDSINDYYSVSLKEDRLKSIGK-ENFTF  56

Query  63   IKMDFSNWHDLVNNLKNKDIDLIIHLGAQAGVRYSLENPWAYESSNILGTLNIYELARKL  122
             K+ + N +DL + + + + +++++L+AQAGVRYS+ENP++Y  SNI+G +NI E +R +
Sbjct  57   NKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHF  116

Query  123  NIEKVVYAssssVYGGNKKIPFSEDDNVDKPVSLYAATKKSNELMAYTYHHLYGIKMTGL  182
            NI++++YASSSSVYG+N   PFS  DN+D P+SLYAATKKSNELMA TY HLY +  TGL
Sbjct  117  NIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGL  176

Query  183  RFFTVYGEYGRPDMAYFKFAKKIISNEPIDIYNYGNMERDFTYISDVVDGINSAIKKDFD  242
            RFFTVYG  GRPDMA FKF+K I+++++ID+YN GNM RDFTY+ D+V++I+  +KK   
Sbjct  177  RFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPAS  236

Query  243  ------------------YEIFNLGNSRPIKLMYFVELIEQYLNKSAEKNFLPMQDGDVL  284
                              Y ++N+GN+ P++LM FVE IE+ L K A KN++ +Q GDV 
Sbjct  237  PNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVP  296

Query  285  RTYADLSKSRKLLNYSPKVSIEEGLKRFCNWFLE  318
             TYA++    + +++ P  +I++G+++F +W+LE
Sbjct  297  ETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLE  330

639) Smlt4612 in NC_010943


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  250 bits (934),  Expect = 6e-68, Method: Compositional matrix adjust.
 Identities = 152/332 (46%), Positives = 231/332 (70%), Gaps = 15/332 (4%)

Query  1    MTILLTGAAGFIGAYTARALLEAGQPVVGLDNFNDYYDPQIKRDRVAALCPAldlrtldl  60
            M IL+TG+AGFIG+  A+ L+  G+ V+G+D++NDYY   +K DR+ ++           
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  61   tdq-qglAALFDEVKPTAVIHLAAQAGVRYSLENPHAYVDSNLVGFVNMLELCRHRGVQH  119
             ++ ++L+ +F + +P  V++LAAQAGVRYS+ENP++Y+DSN+VGF+N+LE  RH  +Q+
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  120  LVYASSSSVYGDSATPPFSEDQRVDQPRSLYAATKAANELMAYTYAQLYGLHATGLRFFT  179
            L+YASSSSVYG +++ PFS  + +D+P SLYAATK +NELMA TY++LY L +TGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  180  VYGPWGRPDMAPLLFSRAVLAGRPIDVFNEGRMQRDFTHVSDIVSGI-------------  226
            VYGPWGRPDMA + F++A++ +++IDV+N+G M RDFT V DIV +I             
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  227  -LGALAHPADGPVPHRVFNLGNHTPVELERFISVIEQAAGRPAQKVYKPMQPGDMVRTMA  285
              GA ++P+ +  P +V+N+GN++PV L  F+  IE+  G+ A+K Y  +QPGD+  T A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  286  DTRRAHDAFGFDAVTPIEEGLPPVVQWCREYF  317
            +       ++F + T I++G+   V+W  EY+
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

640) MJ_1055 in NC_000909


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  249 bits (929),  Expect = 1e-67, Method: Compositional matrix adjust.
 Identities = 159/332 (48%), Positives = 239/332 (72%), Gaps = 21/332 (6%)

Query  5    NILVTGSAGFIGFHLSKYLMDNYEDLKVIGIDNLNNYYNPVLKEKRNEILKNYENYTFIK  64
            +IL+TG+AGFIG HL+K L+   ++  VIG+D++N+YY+  LKE R   + + EN+TF K
Sbjct  2    KILITGTAGFIGSHLAKKLIK--QGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNK  58

Query  65   LDFSDWDDLVENLKDKEIDLIVHLGAQAGVRYSLQNPWAYIKSNEMGTLNIFEFARRFDI  124
            + + + DDL   + D + +++V+L+AQAGVRYS++NP++YI SN +G +NI+E +R+F+I
Sbjct  59   VKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNI  118

Query  125  EKVVYAssssVYGGNRKIPFSEDDRVDKPISLYASTKRSNELMAHVYHHLYGIKMIGLRF  184
            ++++YASSSSVYG+N   PFS  D +D P+SLYA+TK+SNELMAH Y HLY +   GLRF
Sbjct  119  QNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRF  178

Query  185  FTVYGEYGRPDMAYFKFAKNILLGKEIEVYNYGNMERDFTYISDVVDGILRAIKKDFD--  242
            FTVYG  GRPDMA FKF+K I+ ++ I+VYN GNM RDFTY+ D+V++I R +KK     
Sbjct  179  FTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPN  238

Query  243  ----------------YEIFNLGNSKPVKLMYFIELIEKYLNkkakkkFLPMQDGDVLRT  286
                            Y ++N+GN+ PV+LM F+E IE+ L K A+K+++ +Q GDV  T
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPET  298

Query  287  YADLSKSEKLLGYKPKVTIEEGLKRFCNWFLE  318
            YA++    + +++KP  TI++G+++F +W+LE
Sbjct  299  YANVDDLFRDIDFKPETTIQDGVNKFVDWYLE  330

641) SLG_15840 in NC_015976


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  249 bits (928),  Expect = 2e-67, Method: Compositional matrix adjust.
 Identities = 153/332 (47%), Positives = 235/332 (71%), Gaps = 4/332 (1%)

Query  3    RAFITGTAGFIGFHLAELLLQEGWEVSGYDGLTDYYDVALKQSRHRILRQHPaftateal  62
            + +ITGTAGFIG HLA  L+++G  V G D++ DYY V+LK+ R + + ++        L
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVKL  61

Query  63   ledeaalrtalaaaRPDVVIHLAAQAGVRYSIENPRAYVDANMVGTFNLMDAALAARPAH  122
             + +   +  +   +P+VV++LAAQAGVRYSIENPR+Y+D+N+VG  N+++ +      +
Sbjct  62   ENYDDLSKVFVDE-QPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  123  LLMASTSSVYGANSVLPYAEDHQADWPLSFYAATKKANEAMGHAWAHIHGLPITMFRFFT  182
            L+ AS+SSVYGAN+  P++  ++ D PLS+YAATKK+NE M+H+ +H+  LP T +RFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  183  VYGPWGRPDMALFKFTRAILNGDPIDVYNHGEMWRDFTYVGDLVRGI-RLLMDAVPGAA-  240
            VYGPWGRPDMALFKFT+AI+N+++IDVYNHG+M RDFTYV+D+V +I RL+  + +    
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  241  -PAVEGDSLSPVAPWRIVNIGNSRQERLSDFIDAVEAATGRKVIRNLLPMQAGDVPATWA  299
             ++ + D+ S+ AP ++ NIGN+   RL +F++A+E   G+   +N + +Q+GDVP T A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  300  DCSLLERLTGYRPATDMREGVAQFVEWYRGHY  331
            +   L R  +++P T +++GV +FV+WY   Y
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

642) ACMV_26790 in NC_015186


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  247 bits (924),  Expect = 4e-67, Method: Compositional matrix adjust.
 Identities = 142/330 (44%), Positives = 226/330 (69%), Gaps = 18/330 (5%)

Query  1    MKVLLTGAAGFIGYHVAEALLSRGALVAGVDDLNPYYDVRLKHARLDRLAAHDGFRFHRV  60
            MK+L+TG+AGFIG H+A  L+ +G  V GVD +N YY V LK+ RL  ++  + F F++V
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG-KENFTFNKV  59

Query  61   DIADHAALRAV--GDDWDVIVHLAAQAGVRYSIDNPFAYAAANLVGHLSVLEVARHVPRL  118
             + +   L  V  +++ +V+V+LAAQAGVRYSI+NP +Y  +N+VG +++LE +RH   +
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHF-NI  118

Query  119  KHLVYASSSSVYGAGTPLPYAETARADRPQSLYAATKRADELMSAAYAHLYGIRQTGLRF  178
            ++L+YASSSSVYGA T+ P++ +   D+P SLYAATK+++ELM+ +Y+HLY +  TGLRF
Sbjct  119  QNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRF  178

Query  179  FTVYGPWGRPDMAYFGFAEAIMAGRPITLYEAGTLKRDFTYIDDIVEGVMGVIEHAPAEV  238
            FTVYGPWGRPDMA F F+ AI+ +++I +Y+ G + RDFTY+DDIVE++  ++  +++  
Sbjct  179  FTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPN  238

Query  239  --------------GAHRIFNIGNHRAEFVRDLVQLLEEELGRKAVIVDASRPPADPVET  284
                          ++ +++NIGN+ +  + ++V+ +E+ LG+ A        P+D  ET
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPET  298

Query  285  CADLSALAELTGFAPKTNLNQGIKKFVSWY  314
             A++  L    +F P T +++G++KFV WY
Sbjct  299  YANVDDLFRDIDFKPETTIQDGVNKFVDWY  328

643) CLS_25740 in NC_021047


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  247 bits (924),  Expect = 4e-67, Method: Compositional matrix adjust.
 Identities = 153/356 (43%), Positives = 238/356 (67%), Gaps = 41/356 (11%)

Query  10   VLITGAAGFIGFHLTMAMLREKGKAVRIVGIDNLNDYYDPALKRERLFLAEEEQKKQRKA  69
            +LITG+AGFIG HL+  ++++   +  ++G+D++NDYY  +LK +RL           K+
Sbjct  3    ILITGTAGFIGSHLAKKLIKQ---GHYVIGVDSINDYYSVSLKEDRL-----------KS  48

Query  70   GGSSSFLFIQADVADEKAVAQIFEDYKPSLVLHLAAQAGVRYSVDHPKEYIRTNIAGFFN  129
             G  +F F +  + +   ++++F D +P +V++LAAQAGVRYS+++P+ YI +NI GF N
Sbjct  49   IGKENFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMN  108

Query  130  ILEACRSLREKGEPLHLVFASSSSVYGDNQKIPYSVDDKTDSPASLYAATKKSGELLARA  189
            ILE  R +  +    +L++ASSSSVYG N   P+S  D+ D P SLYAATKKS EL+A++
Sbjct  109  ILECSRHFNIQ----NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHT  164

Query  190  YSRLYKIPATGLRFFTVYGPFGRPDMAYFKFTERMVKGIPITLYNYGDMRRDFTYVDDVV  249
            YS+LY++P+TGLRFFTVYGP GRPDMA FKFT  +V++ +I +YN G+M RDFTYVDD+V
Sbjct  165  YSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIV  224

Query  250  GCILKI-----------SGHPPKSENGCVPFRIFNIGNSHPEKLEDFVCLLEESLKRHGV  298
              I ++           SG  P + ++  P++++NIGN+ P +L +FV  +E+ L     
Sbjct  225  EAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKL-----  279

Query  299  IKKDTERVYLPMQPGDVYQTYADMSEYEKEFGAVSF---TRLREGLDRFAGWYAEY  351
              K++ + Y+ +QPGDV +TYA++ +    F  + F   T +++G+++F +WY EY
Sbjct  280  -GKEARKNYMDLQPGDVPETYANVDDL---FRDIDFKPETTIQDGVNKFVDWYLEY  331

644) wcaG in NC_014225


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  245 bits (916),  Expect = 2e-66, Method: Compositional matrix adjust.
 Identities = 150/333 (46%), Positives = 223/333 (67%), Gaps = 22/333 (6%)

Query  5    LLITGAAGFIGFHLARAAKMRGDRVVGLDNFNSYYDPKLKEMRALLLKQEGIEVIHGDIC  64
            +LITG+AGFIG HLA+    +G+ V+G+D++N YY   LKE R   + +E +      + 
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVKLE  62

Query  65   DEALLEKTAKSHAVTHIAHLAAQAGVRYSLENPKAYVKSNIEGFLNVLEVCRRQ--NLKL  122
            +   L K    +    + +LAAQAGVRYS+ENP++Y+ SNI GF+N+LE C R+    +L
Sbjct  63   NYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILE-CSRHFNIQNL  121

Query  123  VYASSSSVYGMNEKVPFSEIDRVDLQASLYGATKKSNELFAATYHHLFNISATGLRYFTV  182
            +YASSSSVYG N   PFS  D +D   SLY+ATKKSNEL A TY HL+N+++TGLR+FTV
Sbjct  122  IYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTV  181

Query  183  YGPWGRPDMAYYSFTQKILNGDPIKVFNHGKMLRDFTYIDDIVRGTLAAIDKECA-----  237
            YGPWGRPDMA + FT+ I+N+++I V+NHG+M+RDFTY+DDIV +    + K  +     
Sbjct  182  YGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEW  241

Query  238  -------------CEVFNLGNHRPTELRKFIEIIEKAVGKKAKMEFLPMQPGDVPATFAD  284
                           V+N+GN+ P  L  F+E IE+ +GK A+ +++ +QPGDVP T+A+
Sbjct  242  SGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYAN  301

Query  285  ISHSQKSLGFEPKTSLETGIPLFVEWF-NFFKK  316
            + +  + ++F P T+++ G+  FV+W+ +++KK
Sbjct  302  VDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

645) MXAN_3987 in NC_008095


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  245 bits (914),  Expect = 2e-66, Method: Compositional matrix adjust.
 Identities = 138/334 (42%), Positives = 222/334 (67%), Gaps = 18/334 (5%)

Query  1    MRVLVTGAAGFIAHHVSARLLARGDAVIGVDNLDPSGDVALKQARLTRLGTLPGATGFTF  60
            M++L+TG+AGFI+ H++ +L+ +G+ VIGVD+++    V+LK+ RL  +G       FTF
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK----ENFTF  56

Query  61   RPVDVTDSPSLRALFEEMRPEAVVHLAARVGVRAPAGTAQAYVDANVSGFLQVLEQASAA  120
              V + +   L  +F + +PE VV+LAA+ GVR +   +++Y+D+N+ GF+++LE +   
Sbjct  57   NKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHF  116

Query  121  RVRHLVyassssvygagsvppFQEGAAADHPLSVYAATKRADELLAHAYSHLHGLPTSGL  180
             +++L+YASSSSVYGA +  PF  +   DHPLS+YAATK+++EL+AH+YSHL  LPT+GL
Sbjct  117  NIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGL  176

Query  181  RFFTVYGPWGRPDMAPLRFLQAIRDGTELSLHGEGRMQRDFTYVEDVAEAVVRVLDRPL-  239
            RFFTVYGPWGRPDMA ++F +AI ++  + +  +G M RDFTYV+D+ EA+ R++ +P  
Sbjct  177  RFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPAS  236

Query  240  -----------PGA--PRHRVLNVGRGEPVSVRAFLSVLERILGARARVKSTPAQPGEMD  286
                       PG+  +  +V N+G   PV +  F+  +E  LG  AR +    QPG++ 
Sbjct  237  PNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVP  296

Query  287  ATWADPSALERETGFRPRVSVEEGLTRLVAWFHE  320
             T A+   L R+ +F+P  ++++G+ ++V W+ E
Sbjct  297  ETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLE  330

646) MYSTI_03928 in NC_020126


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  245 bits (913),  Expect = 3e-66, Method: Compositional matrix adjust.
 Identities = 139/331 (42%), Positives = 228/331 (69%), Gaps = 18/331 (5%)

Query  1    MRVLVTGAAGFIAHHVITRLLARGDTVIGVDNLESSGDVALKQARLTHLQSVPGAERFTC  60
            M++L+TG+AGFI+ H+  +L+ +G+ VIGVD+++    V+LK+ RL  +    G E FT 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI----GKENFTF  56

Query  61   HRADITDTASLAALFRHEQPESVIHLAARVGVRSAGASAQSYLDANVTGFLQVLEQaraa  120
            ++  + +   L+ +F +EQPE V++LAA+ GVR +  ++++Y+D+N+ GF+++LE +R  
Sbjct  57   NKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHF  116

Query  121  rvahvvyassssvygagTPPPFAETAAADHPLNVYSATKRAGELLAHTYSHLYGLPTSGL  180
             + +++YASSSSVYGA T+ PF+ +   DHPL++Y+ATK++ EL+AHTYSHLY LPT+GL
Sbjct  117  NIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGL  176

Query  181  RFFTVYGPWGRPDMAPLRFLRALREGLPIDLYGEGRMRRDFTHVDDVAEAVVRVLDRPP-  239
            RFFTVYGPWGRPDMA ++F +A+ ++ +ID+Y +G M RDFT VDD+ EA+ R++ +P+ 
Sbjct  177  RFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPAS  236

Query  240  -------------TGTPPYRLLNVGRGEPVSLRDFVAVLERHTGTQALLNPRPAQPGEMD  286
                         ++ +PY++ N+G   PV L +FV  +E   G +A  N    QPG++ 
Sbjct  237  PNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVP  296

Query  287  ATWSDSTALERETGFRPRVSVDEGLAGLVAW  317
             T ++   L R+ +F+P  ++++G+  +V W
Sbjct  297  ETYANVDDLFRDIDFKPETTIQDGVNKFVDW  327

647) lspL in NC_015729


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  244 bits (912),  Expect = 5e-66, Method: Compositional matrix adjust.
 Identities = 150/303 (50%), Positives = 217/303 (72%), Gaps = 4/303 (1%)

Query  24   LITGTAGFIGYFTARALLAEGWRVIGLDAMTNYYDVILKQRRHEMLAQSPHFTPVIGRLE  83
            LITGTAGFIG   A+ L+ +G  VIG+D++ +YY V LK+ R   +++  +FT    +LE
Sbjct  4    LITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE-NFTFNKVKLE  62

Query  84   TPGLLQQLFAAHEPQLVIHLAAQAGVRHSIDNPASYVQSNLVGTAELLEAVRAHPPAHTL  143
              + L ++F  ++P++V++LAAQAGVR SI+NP +Y++SN+VG  ++LE  R     + +
Sbjct  63   NYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNLI  122

Query  144  LASTSSVYGANTEMPYLETHKVDTQMSFYAATKKATEAMTHSYAHLYGLPITMFRFFTVY  203
             AS+SSVYGANT  P+  ++++D  +S+YAATKK+ E M+H+Y+HLY LP T +RFFTVY
Sbjct  123  YASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTVY  182

Query  204  GPWGRPDMAHFKFTKAILNGDPIEVYNHGNQQRDFTYIDDLVAGIVALADAIPDPK---A  260
            GPWGRPDMA FKFTKAI+N+++I+VYNHGN  RDFTY+DD+V +I  L    + P+   +
Sbjct  183  GPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEWS  242

Query  261  PVPGDSLSPVAPFRVVNIGNGTPVKLMDYIAAIEAACGRKAEKVFRDAQPGDVPATWADT  320
                D+ S+ AP++V NIGN +PV+LM+++ AIE   G+ A K + D QPGDVP T A+ 
Sbjct  243  GADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYANV  302

Query  321  SLL  323
              L
Sbjct  303  DDL  305

648) Spirs_4248 in NC_014364


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  244 bits (910),  Expect = 5e-66, Method: Compositional matrix adjust.
 Identities = 163/347 (47%), Positives = 233/347 (68%), Gaps = 31/347 (8%)

Query  3    KILVTGAAGFIGHATVCTLLDAGWTVVGIDSINDYYDTALKYARLHTTGIGEEGVEYGKM  62
            KIL+TG+AGFIG      L+  G  V+G+DSINDYY  +LK  RL + G  +        
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKEN--------  53

Query  63   IGSSCYPEYRFMQLALEDRDAVARLFREENFDVVCNLAAQAGVRYSLENPFAYADSNLTG  122
                    + F ++ LE+ D ++++F +E+ +VV NLAAQAGVRYS+ENP +Y DSN+ G
Sbjct  54   --------FTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVG  105

Query  123  FLSILEACRHADvsylvyassssvyGENRSVPFRESDRVDNPVSLYAATKKANELMASAY  182
            F++ILE  RH ++  L+YASSSSVYG N S PF  SD +D+P+SLYAATKK+NELMA +Y
Sbjct  106  FMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTY  165

Query  183  SRLYGFSTVGLRFFTVYGPWGRPDMAPTLFLSAMFEGRPIKVFNNGNMKRDFTYIDDIVS  242
            S+LY ++T GLRFFTVYGPWGRPDMA   F  A+ ++++I V+N+GNM RDFTY+DDIV 
Sbjct  166  SHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVE  225

Query  243  GVVQVISSPKNDGSH---------------TLYNIGRGKPVDLSEFIDLLEKYSGRKAQR  287
            ++ +++  P +   +                +YNIG   PV L EF++ +E+  G+ A++
Sbjct  226  AISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARK  285

Query  288  NLLPIQPGDVPITWADTSCLERDFAYRPSTPVEAGIAQFVEWYREFY  334
            N + +QPGDVP T A+   L RD+ ++P T ++ G+ +FV+WY E+Y
Sbjct  286  NYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

649) Acry_2353 in NC_009484


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  240 bits (895),  Expect = 6e-65, Method: Compositional matrix adjust.
 Identities = 139/326 (43%), Positives = 222/326 (69%), Gaps = 18/326 (5%)

Query  1    MTGAAGFIGYHVAEALLSRGALVAGVDDLNPYYDVRLKHARLDRLAAHDGFRFHRVDIAD  60
            +TG+AGFIG H+A  L+ +G  V GVD +N YY V LK+ RL  ++  + F F++V + +
Sbjct  5    ITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG-KENFTFNKVKLEN  63

Query  61   HAALRAV--GDDWDVIVHLAAQAGVRYSIDNPFAYAAANLVGHLSVLEVARHVPRLKHLV  118
               L  V  +++ +V+V+LAAQAGVRYSI+NP +Y  +N+VG +++LE +RH   +++L+
Sbjct  64   YDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHF-NIQNLI  122

Query  119  YASSSSVYGAGTPLPYAETARADRPQSLYAATKRADELMSAAYAHLYGIRQTGLRFFTVY  178
            YASSSSVYGA T+ P++ +   D+P SLYAATK+++ELM+ +Y+HLY +  TGLRFFTVY
Sbjct  123  YASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTVY  182

Query  179  GPWGRPDMAYFGFAEAIMAGRPITLYEAGTLKRDFTYIDDIVEGVMGVIEHAPAEV----  234
            GPWGRPDMA F F+ AI+ +++I +Y+ G + RDFTY+DDIVE++  ++  +++      
Sbjct  183  GPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEWS  242

Query  235  ----------GAHRIFNIGNHRAEFVRDLVQLLEEELGRKAVIVDASRPPADPVETCADL  284
                      ++ +++NIGN+ +  + ++V+ +E+ LG+ A        P+D  ET A++
Sbjct  243  GADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYANV  302

Query  285  SALAELTGFAPKTNLNHGIKKFVSWY  310
              L    +F P T +++G++KFV WY
Sbjct  303  DDLFRDIDFKPETTIQDGVNKFVDWY  328

650) Maeo_0415 in NC_009635


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  240 bits (895),  Expect = 7e-65, Method: Compositional matrix adjust.
 Identities = 160/334 (48%), Positives = 240/334 (72%), Gaps = 25/334 (7%)

Query  5    NILITGSAGFIGFHLSKYLL--ENYNNVQVIGIDNLNNYYNPLLKEKRNDILKNYENYNF  62
            +ILITG+AGFIG HL+K L+   +Y    VIG+D++N+YY+  LKE R   + + EN+ F
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHY----VIGVDSINDYYSVSLKEDRLKSIGK-ENFTF  56

Query  63   IKADFSNWNDLENNLKNKDIDLIVHLGAQAGVRYSLENPWAYEKSNLLGTMNIFELARKL  122
             K  + N +DL + + + + +++V+L+AQAGVRYS+ENP++Y  SN++G MNI+E +R +
Sbjct  57   NKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHF  116

Query  123  NIEKVVYAssssVYGGNKKIPFSEDDIVDKPVSLYAATKKSNELMAHTYHHLYDIKMIGL  182
            NI++++YASSSSVYG+N   PFS  D +D P+SLYAATKKSNELMAHTY HLY++   GL
Sbjct  117  NIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGL  176

Query  183  RFFTVYGEYGRPDMAYFKFAKKILSNEPIDIYNYGDMERDFTYisdvvdgiissiEKDFD  242
            RFFTVYG  GRPDMA FKF+K I+++++ID+YN G+M RDFTY+ D+V++I   + K   
Sbjct  177  RFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPAS  236

Query  243  ------------------YEIFNLGNSRPVKLMYFVELLEKYLNKEAEKNFLPMQDGDVL  284
                              Y ++N+GN+ PV+LM FVE +E+ L KEA KN++ +Q GDV 
Sbjct  237  PNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVP  296

Query  285  RTYADLNKSSKLLNYNPKVSIEEGLKRFCNWFLE  318
             TYA+++   + ++++P  +I++G+++F +W+LE
Sbjct  297  ETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLE  330

651) Mevan_0412 in NC_009634


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  240 bits (895),  Expect = 7e-65, Method: Compositional matrix adjust.
 Identities = 155/332 (47%), Positives = 228/332 (69%), Gaps = 18/332 (5%)

Query  1    MKILVTGAAGFIGFSFSENILKNTEIQIIGIDNLNPYYDVKLKEKRLDILKGFKNFKFFD  60
            MKIL+TG+AGFIG  ++ +++K+ +  +IG+D++N YY V LKE RL  + G  NF F  
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHY-VIGVDSINDYYSVSLKEDRLKSI-GKENFTFNK  58

Query  61   EDIINYEELDEIFNLEKPDLIVHLAAQAGVRYSLENPHVYEYSNNLGTLNIFELAKKYGI  120
              + NY++L  +F  E+P+++V+LAAQAGVRYS+ENP+ Y  SN +G +NI+E ++ + I
Sbjct  59   VKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNI  118

Query  121  KRVIFASSSSVYGGNEKTPFLESDNVDKPVSLYAATKKYNELIAHVYNHLYGIEMIGLRF  180
            + +I+ASSSSVYG+N   PF  SDN+D P+SLYAATKK NEL+AH Y+HLY +   GLRF
Sbjct  119  QNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRF  178

Query  181  FTVYGEFGRPDMAYWKFTKNILEEKPIDVYNYGKMKRDFTYISDIVEGI----KSAVFLS  236
            FTVYG  GRPDMA  KFTK I+++++IDVYN G+M RDFTY+ DIVE+I    K +   +
Sbjct  179  FTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPN  238

Query  237  KK------------IDYEIFNLGGDNPIELEYMISLIEKETGKKAIKNYLPVQEGDVLIT  284
            K               Y ++N+G ++P+ L   +  IE+  GK A KNY+ +Q GDV  T
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPET  298

Query  285  MADLTKSKENLKYYPNICIEEGIKRFVKWYIQ  316
             A++     ++ + P+  I++G+++FV WY++
Sbjct  299  YANVDDLFRDIDFKPETTIQDGVNKFVDWYLE  330

652) Psesu_2853 in NC_014924


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  240 bits (895),  Expect = 7e-65, Method: Compositional matrix adjust.
 Identities = 150/332 (46%), Positives = 224/332 (68%), Gaps = 14/332 (4%)

Query  1    MTVLVTGAAGFIGAYTCQALAARGEHVIGLDNYNDYYDPAIKRDRVAALCPQVdiraldl  60
            M +L+TG+AGFIG+   + L  +G+ VIG+D+ NDYY  ++K DR+ ++  +        
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  61   adr-dglaalFAEVRPVRVVHLAAQAGVRYSLQNPHAYVASNLEGFVNMLELCRHGGVGH  119
             +  D+L+ +F + +P  VV+LAAQAGVRYS++NP++Y+ SN+ GF+N+LE  RH  + +
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  120  LVYASSSSVYGDSATPPFSEEQRIDRPRSLYAATKAANELMAYSYAQLYGLRATGLRFFT  179
            L+YASSSSVYG +++ PFS  + ID+P SLYAATK +NELMA +Y++LY L +TGLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  180  VYGPWGRPDMAPLLFSRAVLAGRPIEVFNQGRMRRDFTHVSDIVAGILGALDRPA-----  234
            VYGPWGRPDMA + F++A++ +++I+V+N+G M RDFT V DIV +I   + +PA     
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  235  --------GNDLALHEVFNLGNHTPVELERFIGVIEQAAGVPARKVYKPMQPGDMIETMA  286
                    G+  A   V+N+GN++PV L  F+  IE+  G  ARK Y  +QPGD+ ET A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  287  DTRRAAEAFGYEPRTPIEAGLPPVVHWCREYF  318
            +       +++ P T I+ G+   V+W  EY+
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

653) JCM7686_0115 in NC_022041


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  239 bits (892),  Expect = 1e-64, Method: Compositional matrix adjust.
 Identities = 159/332 (48%), Positives = 234/332 (71%), Gaps = 3/332 (0%)

Query  3    TVLVTGAAGFIGFHLSELLLAEGCTVIGVDSLNDYYDPalkaarlarlaaHPGFRFTQGK  62
             +L+TG+AGFIG HL+  L+ +G  VIGVDS+NDYY +        +  +   F F + K
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYY-SVSLKEDRLKSIGKENFTFNKVK  60

Query  63   VETPGLLASLIAEHRPSHAVHLAAQAGVRYSIDNPRAYLEANIAGSFELLEAARAHHLPH  122
            +E  + L+ ++ +++P   V+LAAQAGVRYSI+NPR+Y+++NI G  ++LE +R  ++ +
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  123  LLMASTSSVYGANTAMPYREIDKADSQMSFYaaskkaaeamahshahLFDLPVTMFRFFT  182
            L+ AS+SSVYGANT+ P+   D+ D  +S+YAA+KK+ E MAH+ +HL++LP T +RFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  183  VYGPWGRPDMAPALFTSAITEGRPIKVFNHGKMQRDFTYVGDIVRGIRLLMDRP--PVKG  240
            VYGPWGRPDMA   FT AI ++++I V+NHG+M RDFTYV+DIV +I  L+ +P  P K 
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  241  APVGPEDSLSPVAPWRVVNIGNGAPVPLMEFIAAIEAATGREAVKEMLPMQPGDVPATWA  300
             + +  D+ S+ AP +V NIGN +PV LMEF+ AIE   G+EA K+ + +QPGDVP T A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  301  DTTLLQSLTGYQPQTSVTDGIRAYVDWYRSYY  332
            +   L    +++P+T++ DG+  +VDWY  YY
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY  332

654) SLG_34220 in NC_015976


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  238 bits (886),  Expect = 4e-64, Method: Compositional matrix adjust.
 Identities = 144/336 (43%), Positives = 222/336 (67%), Gaps = 21/336 (6%)

Query  7    ILVTGAAGFIGHATAHRLLAQGERVIGLDNFNDYYDPALKRARAATFQSCPGFRMIEADI  66
            IL+TG+AGFIG   A +L+ QG+ VIG+D++NDYY  +LK  R  ++     F      +
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKVKL  61

Query  67   ADPGAVAAIMREHGIVRVVHLAAQAGVRYSLDHPFSYERSNLAGHLAVLEACRHAPGFAH  126
             + + ++ +  ++    VV+LAAQAGVRYS+++P +Y  SN+ G + +LE C +   + +
Sbjct  62   ENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILE-CSRHFNIQN  120

Query  127  LVYASSSSVYGSRTFSGAGFREDDAVDKPASLYAATKRACELMSESYAGLYGFPQTGLRF  186
            L+YASSSSVYG+ T  +  F   D +D P SLYAATK++ ELM+++Y+ LY +P TGLRF
Sbjct  121  LIYASSSSVYGANT--SKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRF  178

Query  187  FTVYGPWGRPDMAYFNFTRRILAGEPIEVYGEGAMARDFTYVDDIVDGLVGALDHPPPAN  246
            FTVYGPWGRPDMA F+FT+ I+ +++I+VY +G M RDFTYVDDIV+++   +  P+++N
Sbjct  179  FTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPN  238

Query  247  EN---------------RILNIGDNKPVGLMDMIEILETVLGRRAEKLMRPMQPGDVPAT  291
             +               ++ NIG+N PV LM+ +E +E  LG+ A K    +QPGDVP T
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPET  298

Query  292  WADISKL-RDLTGYQPKVMLAEGLHRFAAWYRDFYM  326
             A++  L RD+ +++P   + +G+++F  WY ++Y 
Sbjct  299  YANVDDLFRDI-DFKPETTIQDGVNKFVDWYLEYYK  333

655) Caul_4825 in NC_010338


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  238 bits (886),  Expect = 4e-64, Method: Compositional matrix adjust.
 Identities = 139/332 (42%), Positives = 224/332 (68%), Gaps = 18/332 (5%)

Query  5    VIVTGGAGFIGMHVAERLLERGETVIGVDLFNDYYDPALKAARAARLEDRPGFSMVRMDI  64
            +++TG AGFIG H+A +L+ +G+ VIGVD +NDYY  +LK  R   + ++  F+  ++ +
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKVKL  61

Query  65   ADHVAFAELVRTVGAKRIVHLAAQAGVRYSIDNPFAYQHSNLAGHLSVLEAARHNQVSHL  124
             +   ++ +     +  +V+LAAQAGVRYSI+NP +Y +SN+ G +++LE +RH ++ +L
Sbjct  62   ENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNL  121

Query  125  VYASSSSVYGDRPLDGAGFKETDPVDAPVSLYAATKRANELMSISYAKLYGFPMSGLRFF  184
            +YASSSSVYG     +  F  +D +D P+SLYAATK++NELM+ +Y+ LY +P +GLRFF
Sbjct  122  IYASSSSVYGANT--SKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  185  TVYGPWGRPDMAYYGFTQKILGGEPIEVYGEGRMARDFTYiddivdgvvgvldNPPPP--  242
            TVYGPWGRPDMA + FT+ I+ +++I+VY +G M RDFTY+DDIV+++  ++ +P++P  
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  243  -------------AGHEIYNIGDNDPIGLMEMITTLETALGRQATKILRPMQPGDVTATF  289
                         A   +YNIG+N P+ LME + ++E  LG++A K    +QPGDV  T+
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  290  ADISKLNALTGYKPRVGLAQGLERFAAWWRDF  321
            A++  L    ++KP   + +G+++F  W  ++
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEY  331

656) Desti_2739 in NC_018025


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  235 bits (878),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 150/329 (46%), Positives = 222/329 (68%), Gaps = 17/329 (5%)

Query  4    VLITGSAGFIGFFVASSLLESGETVIGIDNFNSYYTPELKRARTDILRNYTNFVPLEMDL  63
            +LITG+AGFIG  +A  L+  G+ VIG+D++N YY+  LK  R   + +  NF    + L
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKVKL  61

Query  64   VERDAVKSCFAKYSPEIVFHSAAQAGVRHSLKNPHAYQQSNLEGFINLIEEAKQTGIKRF  123
             + D +   F    PE+V + AAQAGVR S+ NP++Y +SN+ GF+N++E +++  I+ +
Sbjct  62   ENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNL  121

Query  124  VYASSSSVYGGNTKMPYAEDDPVNTPVSLYAATKRANELIAYTYTHLWNLQTIGLRFFTV  183
            +YASSSSVYG+NT  P++  D ++ P+SLYAATK++NEL+A TY+HL NL T GLRFFTV
Sbjct  122  IYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTV  181

Query  184  YGPWGRPDMAYWSFLEAILHDEPIKVFNFGKNRRDFTYIDEIVSGVIAALR---------  234
            YGPWGRPDMA   F  AI++D++I V+N G+  RDFTY+D+IV ++   ++         
Sbjct  182  YGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEW  241

Query  235  -------SDRLEPYEIINLGNNTPVELMEFIELLESFAGKKAIKEMVPPQPGDVVATYAD  287
                   +    PY + N+GNN+PV LMEF+E +E+  GK A K+ +  QPGDV  TYA+
Sbjct  242  SGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYAN  301

Query  288  ITRAQSKLDFQPRTALKEGLERFVSWYLE  316
            +      +DF+P T++++G+++FV WYLE
Sbjct  302  VDDLFRDIDFKPETTIQDGVNKFVDWYLE  330

657) GbCGDNIH1_0736 in NC_008343


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  235 bits (875),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 148/338 (44%), Positives = 235/338 (70%), Gaps = 21/338 (6%)

Query  1    MPVLVTGVAGFIGFHVARALMRQGETVIGIDNLNSYYDVGLKrarlavlerearFSFFKV  60
            M +L+TG AGFIG H+A+ L++QG+ VIG+D++N YY V+LK  RL  + +E  F+F KV
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKEN-FTFNKV  59

Query  61   DLADRVAMAE-FTRSCYSVDRIVHLAAQAGVRYSLLDPYAYVASNIMGHLAILEMARALP  119
             L +   ++  F       + +V+LAAQAGVRYS+ +P +Y+ SNI+G + ILE +R + 
Sbjct  60   KLENYDDLSKVFVDE--QPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHF-  116

Query  120  DLRHLVYASSSSVYGGDLEAPFRESERIERPLSLYAATKRADELMSAAYDHLFGIPQTGL  179
            ++++L+YASSSSVYG++   PF  S+ I++PLSLYAATK+++ELM+ +Y HL+ +P TGL
Sbjct  117  NIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGL  176

Query  180  RFFTAYGPWGRPDMAYYAFAKAITQGEEIQLFDHGRLKRDFTYIDDIVDGVIRCLDRPPS  239
            RFFT YGPWGRPDMA + F+KAI +++ I++++HG + RDFTY+DDIV+++ R + +P+S
Sbjct  177  RFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPAS  236

Query  240  SA---DGA-----------RLINIGNNRPEEVSYLVQCLEKAIGKKAMIRTLPCPLTDVQ  285
            +     GA           ++ NIGNN P  +  +V+ +E+ +GK A    +     DV 
Sbjct  237  PNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVP  296

Query  286  ETAADI-TLIHELTGFKPRTELDEGIRRFVAWFRDYHR  322
            ET A++  L++++ +FKP T +++G+ +FV W+ +Y +
Sbjct  297  ETYANVDDLFRDI-DFKPETTIQDGVNKFVDWYLEYYK  333

658) Metig_0228 in NC_015562


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  233 bits (869),  Expect = 9e-63, Method: Compositional matrix adjust.
 Identities = 152/331 (46%), Positives = 229/331 (70%), Gaps = 21/331 (6%)

Query  5    NILVTGSAGFIGFHLSKYLLENYDDVNVIGIDNLNNYYNPMLKEKRNEILKNYENYHFIK  64
            +IL+TG+AGFIG HL+K L+   ++  VIG+D++N+YY+  LKE R   + + EN+ F K
Sbjct  2    KILITGTAGFIGSHLAKKLIK--QGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNK  58

Query  65   LDFSDWDSLVENLKDREIDLIVHLGAQAGVRYSLENPWTYIKSNDMGTLNIFELARKLDI  124
            + + + D L   + D + +++V+L+AQAGVRYS+ENP+TYI SN +G +NI+E +R ++I
Sbjct  59   VKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNI  118

Query  125  EKVVYAssssVYGGNKKIPFSEDDRVDNPISLYAATKRSNELMAYTYHHLYGIKMIGLRF  184
            ++++YASSSSVYG+N   PFS  D +D+P+SLYAATK+SNELMA TY HLY +   GLRF
Sbjct  119  QNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRF  178

Query  185  FTVYGEYGRPDMAFWKFTKNILLGKPIEVYNYGKMERDFTYISDIVDGIIKSIDKNFD--  242
            FTVYG  GRPDMA+ KFTK I+ +++I+VYN G+M RDFTY+ DIV++I + + K     
Sbjct  179  FTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPN  238

Query  243  ----------------YEIFNLGNDNPTNLEYAISLIEKYLGKKAIKDYKPIQPGDVERT  286
                            Y ++N+GN++P  L   +  IE+ LGK A K+Y  +QPGDV  T
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPET  298

Query  287  WADLTKSRKLLGYDPKVRIEEGLKRFCEWFL  317
             A++    + +++ P   I++G+++F +W+L
Sbjct  299  YANVDDLFRDIDFKPETTIQDGVNKFVDWYL  329

659) Oant_0610 in NC_009667


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  232 bits (865),  Expect = 2e-62, Method: Compositional matrix adjust.
 Identities = 155/338 (46%), Positives = 233/338 (69%), Gaps = 24/338 (7%)

Query  1    MKAIVTGAAGFIGFHTAQRLLDEGWQVIGIDNVNDYYPVALKETRLSKLHMREGFRFAKA  60
            MK ++TG+AGFIG H A++L+ +G  VIG+D++NDYY+V+LKE RL  +  +E F F K 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG-KENFTFNKV  59

Query  61   DISDAEAFNaaigadrdadiiVHLAAQAGVRYSIENPTVYISANVQGQVTVFETALRLDK  120
             + + + ++  +  ++   + V+LAAQAGVRYSIENP  YI +N+ G + ++E + +++ 
Sbjct  60   KLENYDDLSKVFVDEQPEVV-VNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNI  118

Query  121  RPPVVYAssssVYGANEKVPFSESDPVDHPVSIYAATKRSGELLAYSYRHVHKLHSAGLR  180
            +  ++YASSSSVYGAN   PFS SD +DHP+S+YAATK+S EL+A +Y H+ +L ++GLR
Sbjct  119  QN-LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLR  177

Query  181  FFTVYGPYGRPDMAPWLFTSAILKGEPIRVFNNGEMQRDFTFVDDIVSGVVGAARRILDK  240
            FFTVYGP GRPDMA   FT AI+++++I V+N+G+M RDFT+VDDIV ++     R++ K
Sbjct  178  FFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAI----SRLVKK  233

Query  241  P---------EDTAP--------VYNLGNNRPVMLNDFIAAIEKATGKEAIRKLEPMPAA  283
            P          D  P        VYN+GNN PV L +F+ AIE+  GKEA ++   + ++
Sbjct  234  PASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPG  293

Query  284  DVPRTYADITLAAGDLGFSPKTTLDQGIPLFVEWFRGY  321
            DVP TYA++     D++F P TT+++G+  FV+W+  Y
Sbjct  294  DVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEY  331

660) Bresu_1138 in NC_014375


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  232 bits (865),  Expect = 2e-62, Method: Compositional matrix adjust.
 Identities = 145/331 (44%), Positives = 215/331 (65%), Gaps = 20/331 (6%)

Query  1    MTVVVTGAAGFIGMHVAERLLNEGQAVIGIDSFNAYYDPalkrlrarrlaTHGGFRMIEA  60
            M +++TG+AGFIG H+A +L+++G+ VIG+DS+N YY +   +    +      F     
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYY-SVSLKEDRLKSIGKENFTFNKV  59

Query  61   DIADPALMSAIVRDHGIRQVIHLAAQAGVRYSIDNPFAYERSNLAGHLSILEACRHGGVE  120
             + +   +S +  D+    V++LAAQAGVRYSI+NP +Y  SN+ G ++ILE  RH  ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  HLVYASSSSVYGDRPLDGRGFREDDPAVSPVSLYAATKRSCELLSHSYASLYGFPQSGLR  180
            +L+YASSSSVYG     ++ F   D    P+SLYAATK+S EL++H+Y+ LY +P +GLR
Sbjct  120  NLIYASSSSVYGANT--SKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLR  177

Query  181  FFTVYGPMGRPDMAYFGFTEKIMRGDPIEVYGEGRMARDFTYVDDIVDGILGVLVNPPTA  240
            FFTVYGP GRPDMA F FT  I+ +++I+VY +G M RDFTYVDDIV++I + LV+ P++
Sbjct  178  FFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAI-SRLVKKPAS  236

Query  241  GGHE----------------IYNIGDSRPVGLMEMIDLLEKALGREAIKIMRPMQPGDVT  284
               E                +YNIG++ PV LME ++ +E+ LG+EA K    +QPGDV 
Sbjct  237  PNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVP  296

Query  285  ATYADISKLHALTGYQPKVELADGLPRFVDW  315
             TYA++  L    +++P   + DG+ +FVDW
Sbjct  297  ETYANVDDLFRDIDFKPETTIQDGVNKFVDW  327

661) AZOBR_140024 in NC_016617


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  230 bits (858),  Expect = 6e-62, Method: Compositional matrix adjust.
 Identities = 156/336 (47%), Positives = 235/336 (70%), Gaps = 18/336 (5%)

Query  1    MTIVVTGAAGFIGSHVAAALLDRGETVLGIDNLNDYYSValkearlarlaarPGFRFVKT  60
            M I++TG+AGFIGSH+A  L+ +G+ V+G+D++NDYYSV+LKE RL  ++    F F K 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   DVSDRTAIEALDPDFAEATG--VVHLAAQAGVRYSLENPYAYVDANVTGQVAMLEAARRM  118
             + +    + L   F +     VV+LAAQAGVRYS+ENP +Y+D+N+ G + +LE +R+ 
Sbjct  60   KLEN---YDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHF  116

Query  119  PKLKHFVYASTSSVYGANKKMPFSVEDRVDSPMSIYAATKKAAEMMTYAYCHLYKFPATG  178
             ++++++YAS+SSVYGAN   PFS  D +D P+S+YAATKK+ E+M+ +Y HLY++P+TG
Sbjct  117  -NIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTG  175

Query  179  LRFFTVYGPWGRPDMAAYLFADAIMAGRPIRVFNEGRMKRDFTFVEDIaagvlaaldrpa  238
            LRFFTVYGPWGRPDMA + F+ AI+ +++I V+N+G M RDFT+V+DI  ++   + +PA
Sbjct  176  LRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPA  235

Query  239  aad-----------angapHTVYNLGNNRTEDLMRFIGIIEESLGREAVKVMEPLQMGDV  287
            +++           ++ AP  VYN+GNN    LM F+  IE+ LG+EA K    LQ GDV
Sbjct  236  SPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDV  295

Query  288  PETTADIEASRLDLGYEPKTPIDVGLPRFIAWYKDY  323
            PET A+++    D+++ P T I+ G+ +F+ WY +Y
Sbjct  296  PETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEY  331

662) Bind_2656 in NC_010581


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  230 bits (858),  Expect = 6e-62, Method: Compositional matrix adjust.
 Identities = 140/332 (43%), Positives = 227/332 (69%), Gaps = 18/332 (5%)

Query  4    IIVTGAAGFIGMHVAERLLDRGEAVVGIDIFNSYYDPTLKAARAARLESRPSFSMVRMDI  63
            I++TG+AGFIG H+A +L+ +G+ V+G+D +N YY  +LK  R   + ++ +F+  ++ +
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKVKL  61

Query  64   ADHESFLALVKRSGVRRIVHLAAQAGVRYSIDNPFAYEHSNLAGHLSVLEACRHAKIEHL  123
             + + +  +        +V+LAAQAGVRYSI+NP +Y +SN+ G +++LE  RH +I++L
Sbjct  62   ENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNL  121

Query  124  VYASSSSVYGDRPLTASGFKETDPVDAPVSLYAATKRSCELISQSYARLYGFPQSGLRFF  183
            +YASSSSVYG    T+  F  +D +D P+SLYAATK+S EL++++Y++LY +P +GLRFF
Sbjct  122  IYASSSSVYGAN--TSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  184  TVYGPWGRPDMAYYGFTEKILAGHPIEVYGDGKMSRdftfiddivdgiigildCPPLMGD  243
            TVYGPWGRPDMA + FT  I+ +++I+VY +G+M RDFT++DDIV++I  ++  P+    
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  244  H---------------EIYNIGDSQPVSLMDMIATLELALGREAVKIFRPMQPGDVTATY  288
            +                +YNIG++ PV LM+ + ++E  LG+EA K +  +QPGDV  TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  289  ADVSKLYSLIGYQPKVNLATGLQRFVHWRLSF  320
            A+V  L+  I+++P   +  G+++FV+W L +
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLEY  331

663) Ilyop_0396 in NC_014632


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  230 bits (858),  Expect = 8e-62, Method: Compositional matrix adjust.
 Identities = 148/351 (43%), Positives = 225/351 (65%), Gaps = 40/351 (11%)

Query  5    LMTGASGFIGSHLVEKLLKEGNRVICVDNFNDYYDLSIKVENTLESTGNVQCTIDNVQLE  64
            L+TG++GFIGSHL  KL+K+G+ VI VD++NDYY +S+K +                   
Sbjct  4    LITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKED-------------------  44

Query  65   KVKRLKGLKETVDSENYILEVVDIRDLESLEKIFSENKIDTVVHLAARAGVRPSIEDPIL  124
               RLK    +++ EN+ ++ V + + + L K+F +++ + VV+LAA+AGVR SIE+P  
Sbjct  45   ---RLK----SIGKENFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRT  97

Query  125  YQEVNGRGTQNILECCRKYGVKNIVAASSSSVYGNNKVVPFKETDVVDYAISPYAATKKS  184
            Y + N  G  NILEC R + ++N++ ASSSSVYG N   PF  +D +D ++S YAATKKS
Sbjct  98   YIDSNIVGFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKS  157

Query  185  NEVMGHVYHSLYKINMAFLRFFTVYGPRQRPDLAINKFTSLILAGEEIPVYGDGSTSRDY  244
            NE+M+H Y  LY++  + LRFFTVYGP+ RPD+A+ KFT  I+ ++ I VY +G+  RD+
Sbjct  158  NELMAHTYSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDF  217

Query  245  TYIADIVDGICRSI--------DYVENNEN------VYEIFNIGSNSPVSLAEMIKTIEK  290
            TY+ DIV++I R +        +    + +       Y ++NIG+NSPV L E + +IE+
Sbjct  218  TYVDDIVEAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIEN  277

Query  291  VVGIKAKINRLPMQPGDVDRTYADVTKLKEMTGYNPSLTFEEGIRKFVDWY  341
             +G  A+ N + +QPGDV  TYA+V  L    +++P  T+++G+ KFVDWY
Sbjct  278  KLGKEARKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWY  328

664) Metin_1457 in NC_014122


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  229 bits (852),  Expect = 2e-61, Method: Compositional matrix adjust.
 Identities = 149/331 (46%), Positives = 230/331 (70%), Gaps = 22/331 (6%)

Query  6    ILVTGSAGFIGFHLSKYLLENYDVNVIGIDNLNNYYNPLLKEKRNEILKSYEDYSFIKLD  65
            IL+TG+AGFIG HL+K L+ + +  VIG+D++N+YY+  LKE R   +   E+++F K+ 
Sbjct  3    ILITGTAGFIGSHLAKKLIKQ-GHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKVK  60

Query  66   FSDWDTLFKSLKDKEIDLIVHLGAQAGVRYSLRNPWAYIRSNDMGTLNIFELARRLDIEK  125
            + + D L K + D + +++V+L+AQAGVRYS+ NP++YI SN +G +NI+E +R+++I++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  126  VVYAssssVYGGNKKVPFSEEDRVDKPISLYAATKRANELMAYTYHHLYGIKMIGLRFFT  185
            ++YASSSSVYG+N   PFS  D +D P+SLYAATK++NELMA TY HLY +   GLRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  186  VYGEYGRPDMAFWKFAKNILLEKPIEVYNYGKMERDFTYISDVVDGIIKSIEKDFD----  241
            VYG  GRPDMA+ KF+K I+ +++I+VYN G+M RDFTY+ D+V++I + + K       
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  242  --------------YEIFNLGNDNPVNL-EYAISLMEKYLGKKAIKDYKPIQPGDVERTW  286
                          Y ++N+GN++PV L E+  ++ +K LGK A K+Y  +QPGDV  T 
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENK-LGKEARKNYMDLQPGDVPETY  299

Query  287  ADLRKSRELLGYDPKVKIEEGLKRFCWWFLE  317
            A++      +++ P   I++G+++F  W+LE
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLE  330

665) Zmob_0362 in NC_017262


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  227 bits (845),  Expect = 7e-61, Method: Compositional matrix adjust.
 Identities = 142/334 (43%), Positives = 231/334 (70%), Gaps = 8/334 (2%)

Query  1    MAILITGIAGFIGSFAAKSLLERGEEIVGIDNLNDYYDPElkkkrlaelkklkNGKLHFS  60
            M ILITG AGFIGS  AK L+ +G+ ++G+D++NDYY       +   LK + + ++ F+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYS---VSLKEDRLKSIGKENFTFN  57

Query  61   PIDFSDGTLLNNTLEKFDFDRIIHLGAQAGVRYSLINPQIYGDSNLIGHLNILELARHRK  120
             + + +   L++ +   + + +++L+AQAGVRYS+ NP+ Y DSN++G +NILE +RH +
Sbjct  58   KVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFN  117

Query  121  VRHMVYASSSSVYGNRSTLPFKVDSQPDYPASLYAATKRAGEMLSESYAYLYRIPLTGLR  180
            +++++YASSSSVYG  ++ PF    + D P SLYAATK++ E+++++Y+ LY +P TGLR
Sbjct  118  IQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLR  177

Query  181  FFTVYGIWGRPDMAMWIFTKKILQKQPIMLFNNGEMQRDFTYIDDAVSGLIAALDNPPQD  240
            FFTVYG WGRPDMA+  FTK I++ Q+I ++N+G+M RDFTY+DD V ++   + +P+  
Sbjct  178  FFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASP  237

Query  241  NN-----KIKSGGSLNPHNLYNIGNHHPENLKYLVELLEEACGCHAIKELRPMQAGDVST  295
            N+        +G+S  P ++YNIGN+ P  L  +VE +E+  G +A K+   +Q+GDV+ 
Sbjct  238  NKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPE  297

Query  296  TYADIETSKRDLGFHPKITLDIGAGRFVEWFRHY  329
            TYA+++   RD++F P  T++ G  +FV+W+ +Y
Sbjct  298  TYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEY  331

666) ZZ6_0360 in NC_018145


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  226 bits (841),  Expect = 1e-60, Method: Compositional matrix adjust.
 Identities = 143/334 (43%), Positives = 231/334 (70%), Gaps = 8/334 (2%)

Query  1    MAILITGIAGFIGSFAAKSLLERGEEIIGIDNLNDYYDPElkkkrlaelkklkNGKLHFF  60
            M ILITG AGFIGS  AK L+ +G+ +IG+D++NDYY       +   LK + + ++ F 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYS---VSLKEDRLKSIGKENFTFN  57

Query  61   PIDFSDGALLNNSLEKFDCDRIIHLGAQAGVRYSLINPQIYGDSNLIGHLNILELARHRK  120
             + + +   L++ +   + + +++L+AQAGVRYS+ NP+ Y DSN++G +NILE +RH +
Sbjct  58   KVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFN  117

Query  121  VRHMVYASSSSVYGNRSTLPFKVDSQPDYPASLYAATKRAGEMLSESYAYLYRIPLTGLR  180
            +++++YASSSSVYG  ++ PF    + D P SLYAATK++ E+++++Y+ LY +P TGLR
Sbjct  118  IQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLR  177

Query  181  FFTVYGIWGRPDMAMWIFTKKILQKQPIMLFNNGEMQRDFTYIDDAVSGLIAALDNPPQD  240
            FFTVYG WGRPDMA+  FTK I++ Q+I ++N+G+M RDFTY+DD V ++   + +P+  
Sbjct  178  FFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASP  237

Query  241  NN-----KIKSGGSLNPHNLYNIGNHHPENLKYLVELLEEACGCHAIKELCPMQAGDVST  295
            N+        +G+S  P ++YNIGN+ P  L  +VE +E+  G +A K+   +Q+GDV+ 
Sbjct  238  NKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPE  297

Query  296  TYADIETSKRDLGFHPKITLDIGASRFVEWFRHY  329
            TYA+++   RD++F P  T++ G ++FV+W+ +Y
Sbjct  298  TYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEY  331

667) Za10_0357 in NC_013355


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  226 bits (841),  Expect = 1e-60, Method: Compositional matrix adjust.
 Identities = 143/334 (43%), Positives = 232/334 (70%), Gaps = 8/334 (2%)

Query  1    MAILITGIAGFIGSFAAKSLLERGEEIVGIDNLNDYYDPElkkkrlaelkklkNGKLHFS  60
            M ILITG AGFIGS  AK L+ +G+ ++G+D++NDYY       +   LK + + ++ F+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYS---VSLKEDRLKSIGKENFTFN  57

Query  61   PIDFSDGALLNNTLEKFDFDRIIHLGAQAGVRYSLINPQIYGDSNLIGHLNILELARHRK  120
             + + +   L++ +   + + +++L+AQAGVRYS+ NP+ Y DSN++G +NILE +RH +
Sbjct  58   KVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFN  117

Query  121  VRHMVYASSSSVYGNRSTLPFKVDSQPDYPASLYAATKRAGEMLSESYAYLYRIPLTGLR  180
            +++++YASSSSVYG  ++ PF    + D P SLYAATK++ E+++++Y+ LY +P TGLR
Sbjct  118  IQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLR  177

Query  181  FFTVYGIWGRPDMAMWIFTKKILQKQPIMLFNNGEMQRDFTYIDDAVSGLIAALDNPPQD  240
            FFTVYG WGRPDMA+  FTK I++ Q+I ++N+G+M RDFTY+DD V ++   + +P+  
Sbjct  178  FFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASP  237

Query  241  NN-----KIKSGGSLNPHNLYNIGNHHPENLKYLVELLEEACGCHAIKELRPMQAGDVST  295
            N+        +G+S  P ++YNIGN+ P  L  +VE +E+  G +A K+   +Q+GDV+ 
Sbjct  238  NKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPE  297

Query  296  TYADIETSKRDLGFYPKITLDIGVGRFVEWFRHY  329
            TYA+++   RD++F P  T++ GV +FV+W+ +Y
Sbjct  298  TYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEY  331

668) ZMO0941 in NC_006526


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  226 bits (841),  Expect = 1e-60, Method: Compositional matrix adjust.
 Identities = 143/334 (43%), Positives = 232/334 (70%), Gaps = 8/334 (2%)

Query  1    MAILITGIAGFIGSFAAKSLLERGEEIVGIDNLNDYYDPElkkkrlaelkklkNGKLHFS  60
            M ILITG AGFIGS  AK L+ +G+ ++G+D++NDYY       +   LK + + ++ F+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYS---VSLKEDRLKSIGKENFTFN  57

Query  61   PIDFSDGALLNNTLEKFDFDRIIHLGAQAGVRYSLINPQIYGDSNLIGHLNILELARHRK  120
             + + +   L++ +   + + +++L+AQAGVRYS+ NP+ Y DSN++G +NILE +RH +
Sbjct  58   KVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFN  117

Query  121  VRHMVYASSSSVYGNRSTLPFKVDSQPDYPASLYAATKRAGEMLSESYAYLYRIPLTGLR  180
            +++++YASSSSVYG  ++ PF    + D P SLYAATK++ E+++++Y+ LY +P TGLR
Sbjct  118  IQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLR  177

Query  181  FFTVYGIWGRPDMAMWIFTKKILQKQPIMLFNNGKMQRDFTYIDDAVSGLIAALDNPPQD  240
            FFTVYG WGRPDMA+  FTK I++ Q+I ++N+G+M RDFTY+DD V ++   + +P+  
Sbjct  178  FFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASP  237

Query  241  NN-----KIKSGGSLNPHNLYNIGNHHPENLKYLVELLEEACGCHAIKELRPMQAGDVST  295
            N+        +G+S  P ++YNIGN+ P  L  +VE +E+  G +A K+   +Q+GDV+ 
Sbjct  238  NKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPE  297

Query  296  TYADIETSKRDLGFYPKITLDIGVGRFVEWFRHY  329
            TYA+++   RD++F P  T++ GV +FV+W+ +Y
Sbjct  298  TYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEY  331

669) Flexsi_1426 in NC_015672


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  225 bits (837),  Expect = 3e-60, Method: Compositional matrix adjust.
 Identities = 138/330 (42%), Positives = 225/330 (69%), Gaps = 20/330 (6%)

Query  1    MNILLTGAAGFIGAHTANKLLESGHNVIGVDNLNDYYDVNLKLHRLNNINHPGFKFHKLD  60
            M+IL+TG+AGFIG+H A+KL+  GH VIGVD++NDYY V+LK +RL++I    F F+K+ 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK  60

Query  61   ISNFEALSLLFDLYKFDSVINLAARAGVRYSIENPFVYFDTNTNGTLNLLEMCRRKDIRK  120
            + N++ LS +F   + + V+NLAA+AGVRYSIENP  Y+D+N  G +N+LE  R+ +I++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  121  FVLASTSSLYAGQK-MPFTEDKPVNTPISPYAASKKGAEVTCYSYHNLFDIDISVVRYFT  179
            ++ AS+SS+Y+++   PF+    ++ P+S YAA+KK+ E+   +Y +L+++  + +R+FT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  180  VYGPAGRPDMSIFRFIKQIYLDQPITIYGDGTQSRDFTYVDDIAEGTVIALKNVG-----  234
            VYGP GRPDM++F+F K I  DQ+I +Y +G   RDFTYVDDI E+    +K+ +     
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  235  --------------YEIFNLGNNTPYELMNVVKMIEKKLGKKAEIEYKPFHKADMTATWA  280
                          Y ++N+GNN+P  LM+ V  IE+KLGK A  +Y  ++ +D+  T A
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  281  DIQKADNILGWEPEHTLEQGIDKTIEWFLD  310
            +++     ++  PE T+++G++K ++W+L+
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLE  330

670) pc0079 in NC_005861


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  224 bits (835),  Expect = 4e-60, Method: Compositional matrix adjust.
 Identities = 145/319 (46%), Positives = 224/319 (71%), Gaps = 18/319 (5%)

Query  26   HLAQKLAKRGDRIIGYDNFNPYYDTQLKRDRALKLSKLGIEIIEGDIQNYEKLQNSillh  85
            HLA+KL K+G+ +IG D++N YY   LK DR   ++K  + +    ++NY+ L + ++ +
Sbjct  15   HLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVKLENYDDLSKVFVDE  74

Query  86   qtthlihlAAQAGVRYSLQEPATYLKTNVDGFLNILEICRSHPHLKLIYASSSSVYGLNT  145
            Q   +++LAAQAGVRYS+++P TY+ +N+ GF+NILE  R     +LIYASSSSVYG NT
Sbjct  75   QPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNLIYASSSSVYGANT  134

Query  146  KVPFSLEDRTDQQASLYGVTKKTNELMAKTYHHLFGISSIGLRFFTVYGPWGRPDMAYFS  205
              PFS  D  D+  SLY+ TKK+NELMA TY HL+ +++ GLRFFTVYGPWGRPDMA F 
Sbjct  135  SKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTVYGPWGRPDMALFK  194

Query  206  FANAIVQGKPIEIFNEGKMQRDFTYVDDIVEGTI-------------GAIDTEISLG---  249
            F++AIV++++I+++N+G+M RDFTYVDDIVE+               ++ D + + +   
Sbjct  195  FTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEWSGADPDPGSSYAP  254

Query  250  --VFNLGNHRPVellyfvlllekelGIEAHKIWLPMQSGDVVATFADIQESTKQLGFQPK  307
              V+N+GN+ PV L+ FV  +E+ LG EA+K  + +Q+GDV  T+A++++  ++++F+P 
Sbjct  255  YKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYANVDDLFRDIDFKPE  314

Query  308  ISIEEGLCRFVKWYKNYYN  326
             +I++G+ +FV WY +YY+
Sbjct  315  TTIQDGVNKFVDWYLEYYK  333

671) Geob_2923 in NC_011979


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  224 bits (835),  Expect = 4e-60, Method: Compositional matrix adjust.
 Identities = 136/338 (41%), Positives = 223/338 (66%), Gaps = 24/338 (7%)

Query  1    MRILITGGAGFIGSHLAERLFLCGHDIIIVDNFNDFYSPAVKRRNFTETAGNAAACGRRL  60
            M+ILITG AGFIGSHLA +L+  GH +I VD++ND+YS ++K   +   + +  +  +  
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNK--  58

Query  61   LLCEGDIRDEEF--IRAIFTQELPDAVIHLAAAAGVRPSIDNPLLYEEVNVRGTMNLLEA  118
                  ++ E++  +  +F +E P+ V++LAA AGVR SI+NP  Y + N+ G MN+LE 
Sbjct  59   ------VKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILEC  112

Query  119  AKAIGVRLFLFASSSSVYGNNPKVPFAEADPVDNPISPYAATKKAGELICHTYHHLYDIN  178
            ++ + ++ +++ASSSSVYG N   PF+ +D +D+P+S YAATKK+ EL+ HTY HLY++ 
Sbjct  113  SRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLP  172

Query  179  IACLRFFTVYGPRQRPDLAISKFVRLIEQGKPIPFYGDGSTSRDYTYIGDIVAGIEKAL-  237
             + LRFFTVYGP+ RPD+A+ KF + I ++++I  Y +G+  RD+TY++DIV +I + + 
Sbjct  173  TTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVK  232

Query  238  -------QWVNTGEK------RYDIFNLGGSSPVALNRLVKIIEHQLGKKAVLECLPMQA  284
                   +W  ++         Y ++N+G +SPV L  +V  IE++LGK A  + + +Q+
Sbjct  233  KPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQP  292

Query  285  GDVERTFANIEKSSSVLGYKPVTPIEEGIANFVRWYQD  322
            GDV  T+AN++     +++KP T I++G+ +FV WY +
Sbjct  293  GDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLE  330

672) B932_0956 in NC_019396


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  222 bits (828),  Expect = 1e-59, Method: Compositional matrix adjust.
 Identities = 139/338 (42%), Positives = 227/338 (68%), Gaps = 20/338 (5%)

Query  1    MKVLVTGAAGFIGFHVADALLARGMDVVGVDTLNSYYDRSLKEARLQQLQGQTNFLFLQM  60
            MK+L+TG+AGFIG H+A  L+ +G  V+GVD++N YY  SLKE RL+ + G+ NF F ++
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI-GKENFTFNKV  59

Query  61   DVSDRDGM-KSLVATHPDIEVIIHLAAQAGVRYSLVDPYSYVQTNVMGQVVLLEACRDLK  119
             + + D++ K +V  +P  EV+++LAAQAGVRYS+ +P +Y+++N++G + +LE  R++ 
Sbjct  60   KLENYDDLSKVFVDEQP--EVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHF-  116

Query  120  DLKHFVYASSSSVYGRNRSLPFKEGDRVDEPGSLYAVTKRAGELTASTYAYLYGIPQTGL  179
            ++++++YASSSSVYG N S PF  +D +D+P SLYA TK++ EL A TY+ LY +P TGL
Sbjct  117  NIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGL  176

Query  180  RFFTVYGAWGRPDMAYYGFADAICTGKPVTLYEGADLSRDFTYIDDITAGILDVMDLPPA  239
            RFFTVYG+WGRPDMA + F+ AI  ++++ +Y+ +++ RDFTY+DDI  +I  ++  P++
Sbjct  177  RFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPAS  236

Query  240  RGEA---------------RLLNLGGDRPERVTTLIGLLEKYLGKAARIELQKRPVADME  284
                               ++ N+G + P R+  ++  +E+ LGK AR +      +D+ 
Sbjct  237  PNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVP  296

Query  285  KTWASLDDVKGLCGWAPRVSLEEGVMKFAAWYREFHKN  322
             T A++DD+    +  P  ++++GV KF  WY E+ K+
Sbjct  297  ETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYYKK  334

673) Ilyop_2446 in NC_014633


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  221 bits (823),  Expect = 4e-59, Method: Compositional matrix adjust.
 Identities = 140/331 (43%), Positives = 224/331 (68%), Gaps = 15/331 (4%)

Query  1    MIIITGGAGFIGSHLCENLIKNGEKIICIDNFNEYYDPMIKENNIKTLISNDRFQLFKGD  60
             I+ITG AGFIGSHL  +LIK+G+ +I +D++N+YY   +KE+ +K+ I+++ F + K  
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKS-IGKENFTFNKVK  60

Query  61   IRDMPFLEKIFSENRVEMVINLAAMAGVRPSLEDPLLYEEVNIKGLMNILELCKKYKINK  120
            + +   L K+F +++ E+V+NLAA AGVR S+E+P  Y + NI G+MNILE  + ++I++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  121  FIQASSSSVYGNNSKVPFSENDVVDYAISPYAATKKSGEILGHVFHHLYNIDMIQLRFFT  180
            +I ASSSSVYG N+  PFS +D +D ++S YAATKKS E+++H + HLYN+    LRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  181  VYGPRQRPDLAIHKFTKFITEGKAVPVYGDGSSERDYTYIDDILDGII----KSIDYLRE  236
            VYGP+ RPD+A+ KFTK I +++A+ VY +G+  RD+TY+DDI+++I     K+    +E
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  237  NQGI----------YHILNLGESETISLNKMIQVIQDELGIKAIINHLPLQPGDVNKTYA  286
              G           Y + N+G++  + L   ++ I++ LG  A  N + LQPGDV  TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  287  DISKAKKLLGYSPKTNFKIGIKNFISWYQEF  317
            ++    + +++ P T ++ G+++F+ WY E+
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLEY  331

674) Gura_2302 in NC_009483


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  219 bits (816),  Expect = 1e-58, Method: Compositional matrix adjust.
 Identities = 139/335 (42%), Positives = 215/335 (65%), Gaps = 22/335 (6%)

Query  1    MRILVTGGAGFIGSHLVERLISSGHDVVIIDNFNDFYDPQLKRRNFSEIVGTAEEGEQNL  60
            M+IL+TG AGFIGSHL  +LI  GH V+ +D++ND+Y   LK   +  I      G +N+
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI------GKENF  54

Query  61   ILCEGDIRDADFVKAVVLQESVDAVIHLAAAAGVRPSIENPLFYEEVNIRGTMNILEAAR  120
             +    + + D +  V ++E  + V++LAA AGVR SIENP  Y + NI G MNILE +R
Sbjct  55   TFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSR  114

Query  121  TAGVRFLLFASSSSVYGNSFKTPFSESDPVDHPISPYAATKKAGELICHTYHHLYKMNIA  180
               ++ L++ASSSSVYG +   PFS SD +DHP+S YAATKK+ EL+ HTY HLY++  +
Sbjct  115  HFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTT  174

Query  181  CLRFFTVYGPRQRPDLAINKFTRLIDQGKAVPFYGDGTTSRDYTFINDIIAGVEKALS--  238
             LRFFTVYGP+ RPD+A+ KFT+ I +++A+  Y +G   RD+T+++DI+ ++ + +   
Sbjct  175  GLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKP  234

Query  239  ------WVCSVEP-------RYDIFNLGGSRPVELSRLVEILESELGKKAILDRLPMQPG  285
                  W  + +P        Y ++N+G + PV L  +VE +E+ LGK A  + + +QPG
Sbjct  235  ASPNKEW-SGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPG  293

Query  286  DVHITFADLAKSGSILGYQPVTSIEEGLRAFIRWY  320
            DV  T+A++      ++++P T+I++G+  F+ WY
Sbjct  294  DVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWY  328

675) LILAB_28080 in NC_015711


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  219 bits (817),  Expect = 1e-58, Method: Compositional matrix adjust.
 Identities = 134/334 (41%), Positives = 220/334 (66%), Gaps = 18/334 (5%)

Query  1    MRVLVTGAAGFIAHHVSARLLARGAAVIGVDNLDPAGDVALKQarlarlralPGAEAFTF  60
            M++L+TG+AGFI+ H++ +L+ +G  VIGVD+++    V+LK+ RL  +    G E FTF
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSI----GKENFTF  56

Query  61   RHQDVTDGPSLRALFEQTRPEAVVHLaarvgvrapagaaqaYVDANVSGFLQVLEQSSAA  120
                + +   L  +F + +PE VV+LAA+ GVR +   +++Y+D+N+ GF+++LE S   
Sbjct  57   NKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHF  116

Query  121  GVRHLvyassssvygagsaPPFQEGAAADHPLSVYAATKRADELLAHAYSHLHGLPVSGL  180
             +++L+YASSSSVYGA ++ PF  +   DHPLS+YAATK+++EL+AH+YSHL  LP +GL
Sbjct  117  NIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGL  176

Query  181  RFFTVYGPWGRPDMAPLRFLRALREGTELPLHGDGRMQRDFTYVEDVAEAVLRVLDRPPQ  240
            RFFTVYGPWGRPDMA ++F +A+ ++  + +  +G M RDFTYV+D+ EA+ R++ +P+ 
Sbjct  177  RFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPAS  236

Query  241  GA--------------PACRVLNVGRGEPVSMRAFLAVLERLMGARARVRSTPVQPGEMD  286
                            ++ +V N+G   PV +  F+  +E  +G  AR     +QPG++ 
Sbjct  237  PNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVP  296

Query  287  ATWADPSALERETGFRPRVSVEEGLARLVTWFQE  320
             T A+   L R+ +F+P  ++++G+ ++V W+ E
Sbjct  297  ETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLE  330

676) RA0C_1617 in NC_017045


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  213 bits (792),  Expect = 1e-56, Method: Compositional matrix adjust.
 Identities = 142/349 (41%), Positives = 225/349 (65%), Gaps = 37/349 (10%)

Query  7    LVTGGSGFIGSHLVEALLKNGHFVINVDNFDDFYNYKTKINNTLESLGITTNFDFENKNL  66
            L+TG +GFIGSHL   L+K+GH+VI VD+++D+Y+   K ++ L S+G   NF F++ +L
Sbjct  4    LITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLK-EDRLKSIG-KENFTFNKVKL  61

Query  67   DIKKLASLVNKGNYKFYYQDIRDKEGLEKIFKNHRPDVVIHLAALAGVRPSIERPLEYQE  126
            +           NY          ++L K+F +++P+VV++LAA AGVR SIE P  Y +
Sbjct  62   E-----------NY----------DDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYID  100

Query  127  VNIKGTMNIWEVAKDLGICKFVIASSSSVYGNNEKIPFSEEDNVDRPISPYAATKKCVEV  186
             NI G MNI E ++++ I +++ ASSSSVYG N   PFS  DN+D+P+S YAATKK  E+
Sbjct  101  SNIVGFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNEL  160

Query  187  LGHTYHHLYGMDMVQLRFFTVYGPRQRPDLAIHKFAKIIKDNKQVPFYGDGNTARDYTFV  246
            ++HTY HLY +    LRFFTVYGP+ RPD+A+ KF+K I +++ +  Y +GN  RD+T+V
Sbjct  161  MAHTYSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYV  220

Query  247  DDIIDGIMKSIKY----------VEENAGV----YEIFNLGESEVIPLHKMLSTIEEELG  292
            DDI+++I + +K            + ++G     Y ++N+G++  + L   + +IE+ LG
Sbjct  221  DDIVEAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLG  280

Query  293  VKATLNKLPMQAGDVQKTNADIRKAQQKIGYAPTTNFQNGIKKFVEWFL  341
              A  N + +Q+GDV  T A++    + I++ P T +Q+G++KFV+W+L
Sbjct  281  KEARKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYL  329

677) Riean_1341 in NC_014738


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  213 bits (792),  Expect = 1e-56, Method: Compositional matrix adjust.
 Identities = 142/349 (41%), Positives = 225/349 (65%), Gaps = 37/349 (10%)

Query  7    LVTGGSGFIGSHLVEALLKNGHFVINVDNFDDFYNYKTKINNTLESLGITTNFDFENKNL  66
            L+TG +GFIGSHL   L+K+GH+VI VD+++D+Y+   K ++ L S+G   NF F++ +L
Sbjct  4    LITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLK-EDRLKSIG-KENFTFNKVKL  61

Query  67   DIKKLASLVNKGNYKFYYQDIRDKEGLEKIFKNHRPDVVIHLAALAGVRPSIERPLEYQE  126
            +           NY          ++L K+F +++P+VV++LAA AGVR SIE P  Y +
Sbjct  62   E-----------NY----------DDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYID  100

Query  127  VNIKGTMNIWEVAKDLGICKFVIASSSSVYGNNEKIPFSEEDNVDRPISPYAATKKCVEV  186
             NI G MNI E ++++ I +++ ASSSSVYG N   PFS  DN+D+P+S YAATKK  E+
Sbjct  101  SNIVGFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNEL  160

Query  187  LGHTYHHLYGMDMVQLRFFTVYGPRQRPDLAIHKFAKIIKDNKQVPFYGDGNTARDYTFV  246
            ++HTY HLY +    LRFFTVYGP+ RPD+A+ KF+K I +++ +  Y +GN  RD+T+V
Sbjct  161  MAHTYSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYV  220

Query  247  DDIIDGIMKSIKY----------VEENAGV----YEIFNLGESEVIPLHKMLSTIEEELG  292
            DDI+++I + +K            + ++G     Y ++N+G++  + L   + +IE+ LG
Sbjct  221  DDIVEAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLG  280

Query  293  VKATLNKLPMQAGDVQKTNADIRKAQQKIGYAPTTNFQNGIKKFVEWFL  341
              A  N + +Q+GDV  T A++    + I++ P T +Q+G++KFV+W+L
Sbjct  281  KEARKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYL  329

678) G148_0261 in NC_020125


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  213 bits (792),  Expect = 1e-56, Method: Compositional matrix adjust.
 Identities = 142/349 (41%), Positives = 225/349 (65%), Gaps = 37/349 (10%)

Query  7    LVTGGSGFIGSHLVEALLKNGHFVINVDNFDDFYNYKTKINNTLESLGITTNFDFENKNL  66
            L+TG +GFIGSHL   L+K+GH+VI VD+++D+Y+   K ++ L S+G   NF F++ +L
Sbjct  4    LITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLK-EDRLKSIG-KENFTFNKVKL  61

Query  67   DIKKLASLVNKGNYKFYYQDIRDKEGLEKIFKNHRPDVVIHLAALAGVRPSIERPLEYQE  126
            +           NY          ++L K+F +++P+VV++LAA AGVR SIE P  Y +
Sbjct  62   E-----------NY----------DDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYID  100

Query  127  VNIKGTMNIWEVAKDLGICKFVIASSSSVYGNNEKIPFSEEDNVDRPISPYAATKKCVEV  186
             NI G MNI E ++++ I +++ ASSSSVYG N   PFS  DN+D+P+S YAATKK  E+
Sbjct  101  SNIVGFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNEL  160

Query  187  LGHTYHHLYGMDMVQLRFFTVYGPRQRPDLAIHKFAKIIKDNKQVPFYGDGNTARDYTFV  246
            ++HTY HLY +    LRFFTVYGP+ RPD+A+ KF+K I +++ +  Y +GN  RD+T+V
Sbjct  161  MAHTYSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYV  220

Query  247  DDIIDGIMKSIKY----------VEENAGV----YEIFNLGESEVIPLHKMLSTIEEELG  292
            DDI+++I + +K            + ++G     Y ++N+G++  + L   + +IE+ LG
Sbjct  221  DDIVEAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLG  280

Query  293  VKATLNKLPMQAGDVQKTNADIRKAQQKIGYAPTTNFQNGIKKFVEWFL  341
              A  N + +Q+GDV  T A++    + I++ P T +Q+G++KFV+W+L
Sbjct  281  KEARKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYL  329

679) RIA_0873 in NC_017569


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  213 bits (792),  Expect = 1e-56, Method: Compositional matrix adjust.
 Identities = 142/349 (41%), Positives = 225/349 (65%), Gaps = 37/349 (10%)

Query  7    LVTGGSGFIGSHLVEALLKNGHFVINVDNFDDFYNYKTKINNTLESLGITTNFDFENKNL  66
            L+TG +GFIGSHL   L+K+GH+VI VD+++D+Y+   K ++ L S+G   NF F++ +L
Sbjct  4    LITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLK-EDRLKSIG-KENFTFNKVKL  61

Query  67   DIKKLASLVNKGNYKFYYQDIRDKEGLEKIFKNHRPDVVIHLAALAGVRPSIERPLEYQE  126
            +           NY          ++L K+F +++P+VV++LAA AGVR SIE P  Y +
Sbjct  62   E-----------NY----------DDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYID  100

Query  127  VNIKGTMNIWEVAKDLGICKFVIASSSSVYGNNEKIPFSEEDNVDRPISPYAATKKCVEV  186
             NI G MNI E ++++ I +++ ASSSSVYG N   PFS  DN+D+P+S YAATKK  E+
Sbjct  101  SNIVGFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNEL  160

Query  187  LGHTYHHLYGMDMVQLRFFTVYGPRQRPDLAIHKFAKIIKDNKQVPFYGDGNTARDYTFV  246
            ++HTY HLY +    LRFFTVYGP+ RPD+A+ KF+K I +++ +  Y +GN  RD+T+V
Sbjct  161  MAHTYSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYV  220

Query  247  DDIIDGIMKSIKY----------VEENAGV----YEIFNLGESEVIPLHKMLSTIEEELG  292
            DDI+++I + +K            + ++G     Y ++N+G++  + L   + +IE+ LG
Sbjct  221  DDIVEAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLG  280

Query  293  VKATLNKLPMQAGDVQKTNADIRKAQQKIGYAPTTNFQNGIKKFVEWFL  341
              A  N + +Q+GDV  T A++    + I++ P T +Q+G++KFV+W+L
Sbjct  281  KEARKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYL  329

680) CL3_12070 in NC_021024


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  212 bits (788),  Expect = 2e-56, Method: Compositional matrix adjust.
 Identities = 128/305 (42%), Positives = 209/305 (69%), Gaps = 21/305 (6%)

Query  8    YITGFRKGEWKGCMAHGIVLIQADVADEKAVAQIFEDYKPSLVLHLAAQAGVRYSVDHPK  67
            Y  +++ +  K+   + + + +  + +   ++++F D +P +V++LAAQAGVRYS+++P+
Sbjct  37   YSVSLKEDRLKSIGKENFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPR  96

Query  68   EYIRTNIAGFFNILEACRSLREKGEPLHLVFASSSSVYGDNQKIPYSVDDKTDSPASLYA  127
             YI +NI GF NILE  R +  +    +L++ASSSSVYG N   P+S  D+ D P SLYA
Sbjct  97   TYIDSNIVGFMNILECSRHFNIQ----NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYA  152

Query  128  ATKKSGELLARAYSRLYKIPATGLRFFTVYGPFGRPDMAYFKFTERMVKGIPITLYNYGD  187
            ATKKS EL+A++YS+LY++P+TGLRFFTVYGP GRPDMA FKFT  +V++ +I +YN G+
Sbjct  153  ATKKSNELMAHTYSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGN  212

Query  188  MRRDFTYVDDVVGCILKI-----------SGHPPKSENGCVPFRIFNIGNSHPEKLEDFV  236
            M RDFTYVDD+V  I ++           SG  P + ++  P++++NIGN+ P +L +FV
Sbjct  213  MMRDFTYVDDIVEAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFV  272

Query  237  CLLEESLKRHGVIKKDTEREYLPMQPGDVYQTYADMSEYEKEFGAVSFTRLREGLDRFAG  296
              +E+ L       K++ ++Y+ +QPGDV +TYA++ +  ++++  + T +++G+++F +
Sbjct  273  EAIENKL------GKEARKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVD  326

Query  297  WYAEY  301
            WY EY
Sbjct  327  WYLEY  331

681) B739_0545 in NC_018609


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  212 bits (789),  Expect = 2e-56, Method: Compositional matrix adjust.
 Identities = 141/349 (41%), Positives = 225/349 (65%), Gaps = 37/349 (10%)

Query  7    LVTGGSGFIGSHLVEALLKNGHFVINVDNFDDFYNYKTKINNTLESLGITTNFDFENKNL  66
            L+TG +GFIGSHL   L+K+GH+VI VD+++D+Y+   K ++ L S+G   NF F++ +L
Sbjct  4    LITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLK-EDRLKSIG-KENFTFNKVKL  61

Query  67   DIKKLASLVNKGNYKFYYQDIRDKEGLEKIFKNHRPDVVIHLAALAGVRPSIERPLEYQE  126
            +           NY          ++L K+F +++P+VV++LAA AGVR SIE P  Y +
Sbjct  62   E-----------NY----------DDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYID  100

Query  127  VNIKGTMNIWEVAKDSGVCKFVIASSSSVYGNNEKNPFSEEDNVDRPISPYAATKKCVEV  186
             NI G MNI E +++  + +++ ASSSSVYG N  +PFS  DN+D+P+S YAATKK  E+
Sbjct  101  SNIVGFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNEL  160

Query  187  LGHTYHHLYGMDMVQLRFFTVYGPRQRPDLAIHKFAKIIKDNKQVPFYGDGNTARDYTFV  246
            ++HTY HLY +    LRFFTVYGP+ RPD+A+ KF+K I +++ +  Y +GN  RD+T+V
Sbjct  161  MAHTYSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYV  220

Query  247  DDIIDGIMKSIKY----------VEENAGV----YEIFNLGESEVIPLHKMLSTIEEELG  292
            DDI+++I + +K            + ++G     Y ++N+G++  + L   + +IE+ LG
Sbjct  221  DDIVEAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLG  280

Query  293  VKATLNKLPMQAGDVQKTNADIRKAQQKIGYAPTTNFQNGIKKFVEWFL  341
              A  N + +Q+GDV  T A++    + I++ P T +Q+G++KFV+W+L
Sbjct  281  KEARKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYL  329

682) Mpsy_2511 in NC_018876


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  209 bits (779),  Expect = 1e-55, Method: Compositional matrix adjust.
 Identities = 136/329 (42%), Positives = 216/329 (66%), Gaps = 19/329 (5%)

Query  1    MVILLTGCAGFIGSHVLDRLLSMDEEVIGVDNFDSFYNPLIKCKNIEHNLKNKNFALYNA  60
            M IL+TG AGFIGSH+  +L+  ++ VIGVD+++ +Y+  +K   +  ++ + NF++ + 
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRL-KSIGKENFTFNKV  59

Query  61   DIRHIKEMNAIFHDNDITTIIHLAARAGVRPSINDPLLYEDVNIRGTLNLLELSRKYNVE  120
             + +  +++ +F D++   +++LAA+AGVR SI++P  Y D NI G +N+LE SR +N++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  NFVFASTSSVYGANEKIPFSEEDCVDRSISPYAASKKACETFCYTHHHLYNLPVVCLRFF  180
            N+++AS+SSVYGAN   PFS  D +D+++S YAA+KK+ E    T  HLYNLP   LRFF
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  181  TVYGPRQRPEMAIHKFTQLIDEGSEIEMYGNGASKRDYTYIDDIVDGIIN-----ATGIK  235
            TVYGP+ RP+MA+ KFT+ I ++  I++Y +G   RD+TY+DDIV++I       A+  K
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  236  E-------------GYEIINLGNSDVVELRYLIRVIEQNLGKKANIKELPDQPGDVPITY  282
            E              Y + N+GN+  V L  ++  IE++LGK A  + +  QPGDVP TY
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  283  ADISKARSLIRYNPQVKIEEGVRRFVEWY  311
            A++      I ++P+  I++GV +FV+WY
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWY  328

683) BHWA1_02667 in NC_012226


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  209 bits (776),  Expect = 2e-55, Method: Compositional matrix adjust.
 Identities = 138/331 (42%), Positives = 227/331 (69%), Gaps = 19/331 (5%)

Query  1    MNILLTGVAGFIGSNLLDKLLTNKDHTVIGIDNLNDFYDPLikqnniknninnknfifyn  60
            M+IL+TG AGFIGS+L  KL+ +++H VIG+D++ND+Y ++  +++  ++I + NF F +
Sbjct  1    MKILITGTAGFIGSHLAKKLI-KQGHYVIGVDSINDYY-SVSLKEDRLKSIGKENFTFNK  58

Query  61   iDLLNTSELKKIFENNKIDNVIHLAGYGGVRPSIENPKLYIDNNIVATLNILECMKNHKI  120
            + L N  +L K+F +++ + V++LA+ +GVR SIENP+ YID+NIV+ +NILEC ++ +I
Sbjct  59   VKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNI  118

Query  121  QKLVYASSSSVYGNSKETIFKETLNVSEPISPYAMTKKACEELCYTYNKLYNIKVIALRF  180
            Q+L+YASSSSVYG +    F  + N+ +P+S YA TKK+ E +  TY+ LYN+   +LRF
Sbjct  119  QNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRF  178

Query  181  FTVYGKRQRPDLAISKFTKLILENNPIPVFGDGSTMRDYTYIEDIVSGIISAI-------  233
            FTVYG + RPD+A+ KFTK I+++++I V+ +G+ MRD+TY++DIV +I   +       
Sbjct  179  FTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPN  238

Query  234  -EYNKTN---------YEIINLGGGEPINLERMIKTIETVLGKKAIINRMEMQKGDVDKT  283
             E + ++         Y + N+G   P+ L   + +IE  LGK A  N M++Q GDV  T
Sbjct  239  KEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPET  298

Query  284  VADITKARNLLNYNPSTSFENGIKKFVDWYI  314
             A++      ++++P T++++G++KFVDWY+
Sbjct  299  YANVDDLFRDIDFKPETTIQDGVNKFVDWYL  329

684) THEYE_A1375 in NC_011296


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  208 bits (775),  Expect = 2e-55, Method: Compositional matrix adjust.
 Identities = 132/327 (41%), Positives = 213/327 (66%), Gaps = 20/327 (6%)

Query  4    IFVTGSAGFIGWATCKLLLNKGFTVIGIDNINDYYDPKIKELRLQDLKKFQNFIFYKADI  63
            I++TG+AGFIG    K L+++G  VIG+D+INDYY   +KE RL+ + K +NF F K  +
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKVKL  61

Query  64   EDFENLKNIFKSYKIDGVINLAARAGVRASVENPWGYLDTNVRGTINLLECVKEYAIKNF  123
            E++++L ++F   + + V+NLAA+AGVR S+ENP+ Y+D+N+ G +N+LEC +++ I+N+
Sbjct  62   ENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNL  121

Query  124  VLASTSSVYGDTEKMPFKVSDITDKPLAPYPASKKSAELFCYSYHYLYGINTIIPRYFTV  183
            + AS+SSVYG     PF  SD  D PL+ Y+A+KKS EL   +Y  LY + T   R+FTV
Sbjct  122  IYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTV  181

Query  184  YGPFGRPDMSIFRFIKKINDGEPITVYGDGKQKRDFTFVEDIAEATVLCLNLEG------  237
            YGP GRPDM++F+F K I ++++I VY +G+  RDFT+V+DI EA    ++  +      
Sbjct  182  YGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEW  241

Query  238  -------------YKIMNFGNDRPVELIYVINLIEELIGKKAKIQWQPRHPADIYATWAD  284
                         YK+ N+GN+ PV L+  ++ IE+ +GK A+ +    +P+D+  T A+
Sbjct  242  SGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYAN  301

Query  285  ISEAKQYIGWSPKISIEEGIRITVEWF  311
            + +  + I+  P  +I++G+   V+W+
Sbjct  302  VDDLFRDIDFKPETTIQDGVNKFVDWY  328

685) Sterm_3095 in NC_013517


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  207 bits (768),  Expect = 8e-55, Method: Compositional matrix adjust.
 Identities = 142/349 (41%), Positives = 221/349 (64%), Gaps = 38/349 (10%)

Query  5    LVTGGAGFIGSHLVEKLLKNGNKVINIDNFNEFYNYNIKVKNVLDSTGKIQKNDDGEIKV  64
            L+TG AGFIGSHL  KL+K+G+ VI +D++N++Y+ ++K  + L S GK           
Sbjct  4    LITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLK-EDRLKSIGK-----------  51

Query  65   NELQDLKKLVDSENYILEIVDITNMEILEEIFQRNEIDTVIHLAAMAGVRPSIEKPLLYE  124
                        EN+ ++ V + N + L  +F  ++ + V++LAA AGVR SIE+P  Y 
Sbjct  52   ------------ENFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYI  99

Query  125  KVNIRGTMNILELINKYNIKKFICASSSSVYGNNEKVPFSEKDNVDRAISPYAATKKSCE  184
              NI G MNILE    +NI+++I ASSSSVYG N   PFS  DN+D+++S YAATKKS E
Sbjct  100  DSNIVGFMNILECSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNE  159

Query  185  IIGHSYHHLYDIDTIMLRFFTVYGPRQRPDLAIHKFTKAIIEEKEIPFYGDGTTQRDYTY  244
            +++H+Y HLY++ T  LRFFTVYGP+ RPD+A+ KFTKAI++++ I  Y +G   RD+TY
Sbjct  160  LMAHTYSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTY  219

Query  245  IDDIIDGV---LKSIIYLEKNKN-----------IYEIINLGESETISLRKMVKTLENEI  290
            +DDI++++   +K     +K+ +            Y + N+G++  + L   V ++EN +
Sbjct  220  VDDIVEAISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKL  279

Query  291  GKKAVLKKLSMQPGDVNRTFADISKAKELIGYDPKTKFEEGIKKFVNWY  339
            GK A  + + +QPGDV  T+A++      I++ P T +++G++KFV+WY
Sbjct  280  GKEARKNYMDLQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWY  328

686) Thein_1217 in NC_015681


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  204 bits (760),  Expect = 3e-54, Method: Compositional matrix adjust.
 Identities = 131/327 (41%), Positives = 219/327 (67%), Gaps = 19/327 (5%)

Query  4    ILITGGAGFIGSHLVDNLLARGEKVVVVDDFNDYYSPKIKWKNIEQALKNHNFHLEQGDI  63
            ILITG AGFIGSHL  +L+ +G+ V+ VD +NDYYS  +K  +  +++ ++NF +++  +
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLK-EDRLKSIGKENFTFNKVKL  61

Query  64   RDFPFLERVFKRYPIKCVVHLAARAGVRPSVEDPILYEEVNGVGTTNLLELARRFEVPKF  123
             ++  L +VF       VV+LAA+AGVR S+E+P  Y + N VG  N+LE +R+F++ ++
Sbjct  62   ENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNL  121

Query  124  vygssssvygyTDQVPFKEDACADQPVSPYAATKRANELMCHAYHHLFGLKVVCLRFFTV  183
            +Y+SSSSVYG     PF      D+P+S YAATK++NELM H+Y HL+ L    LRFFTV
Sbjct  122  IYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTV  181

Query  184  YGPRQRPEMAIHKFTRLIDEGKEIPVYGDGSSKRDYTYIDDIIQGVV------AAIDKDF  237
            YGP+ RP+MA+ KFT+ I +++ I VY +G+  RD+TY+DDI++++       A+ +K+ 
Sbjct  182  YGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEW  241

Query  238  D------------YEIFNLGESQVTDLLTLIRLIEENLGKPAKIKFLPFQAGDVPITYAD  285
                         Y ++N+G++    L+ ++  IE++LGK A+ +++ +Q+GDVP TYA+
Sbjct  242  SGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYAN  301

Query  286  ISKAKKILGYNPQVPIEEGIKRFISWY  312
            +    + ++++P+  I++G+++F+ WY
Sbjct  302  VDDLFRDIDFKPETTIQDGVNKFVDWY  328

687) Ilyop_2745 in NC_014633


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  191 bits (707),  Expect = 5e-50, Method: Compositional matrix adjust.
 Identities = 140/328 (43%), Positives = 214/328 (66%), Gaps = 15/328 (4%)

Query  3    KYLVTGGAGFIGSHLCDYLLDRGHKVVVVDNFNAYYDVEIKERNVGSNLDNPNYKLYRGD  62
            K L+TG AGFIGSHL   L+ +GH V+ VD++N YY V +KE  +  ++++ N+ + +  
Sbjct  2    KILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRL-KSIGKENFTFNKVK  60

Query  63   IRDIDFLKKIFQDEKIDAVINLAAMAGIRPSLENPMLYEEVNIRGLMNLLELSKANGINK  122
            + + D L K+F DE+ + V+NLAA AG+R S+ENP  Y + NI G+MN+LE S+   I++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  123  FIQASSSSVYGNNKKVPFKETAVVDFAISPYAATKKSGEVMGHVYHYLYNIDMIQLRFFT  182
            +I ASSSSVYG N   PF  +  +D ++S YAATKKS E+M+H Y  LYN+    LRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  183  VYGPRQRPDLAIHKFTGMITAGEAIPFYGDGTTQRdytyiddiidgiVKSIRYLENNDN-  241
            VYGP+ RPD+A+ KFT  I  ++AI  Y +G   RD+TY+DDI+++I + ++   + ++ 
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  242  -------------VYEIFNLGESHTISLKEMVGTIEEELGIEAKINRQPMQPGDVEKTYA  288
                          Y ++N+G++  + L E V +IE+ LG EA+ N   +QPGDV  TYA
Sbjct  241  WSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  289  DISKAKEILGYNPKTEFKDGIRKFVQWY  316
            ++      ++++P T ++DG+ KFV+WY
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWY  328

688) SYO3AOP1_0164 in NC_010730


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  191 bits (708),  Expect = 5e-50, Method: Compositional matrix adjust.
 Identities = 133/330 (41%), Positives = 214/330 (65%), Gaps = 22/330 (6%)

Query  4    VLLTGAAGFIGWKTAEFLLKEGYKVIGVDNLNNYYDVRLKEYRKKDLEKYENFKFYPVDI  63
            +L+TG+AGFIG   A  L+K+G  VIGVD++N+YY V LKE R K + K ENF F  V +
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKVKL  61

Query  64   ENLQALEILFNDYKFDVVINLAARAGVRYSMINPYVYMTTNANGTLNLLDLMKKYSVKKF  123
            EN + L  +F D + +VV+NLAA+AGVRYS+ NP  Y+ +N  G +N+L+  + ++++++
Sbjct  62   ENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNL  121

Query  124  VLASTSSLYAGQ-PMPFKEDLPVNTPISPYAASKKAAEVMAYTYHYLYGIDVSVVRYFTV  182
            + AS+SS+Y+++ + PF     ++ P+S YAA+KK+ E+MA TY  LY +  + +R+FTV
Sbjct  122  IYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTV  181

Query  183  YGPAGRPDMSIFRFIKWIDEGKPIILYGDGSQSRDFTYVDDIARG-TILATKELG-----  236
            YGP GRPDM++F+F K I ++++I +Y +G+  RDFTYVDDI  + + L  K  +     
Sbjct  182  YGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKEW  241

Query  237  -------------YEIINLGGGKNPISLKRVIETIEAHLGKKAVIDYRPFHKADLKETWA  283
                         Y + N+ G ++P+ L   +E+IE  LGK A  +Y  ++ +D+ ET A
Sbjct  242  SGADPDPGSSYAPYKVYNI-GNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETYA  300

Query  284  DITKAKNLLGWEPKVSFEEGIKKTVDWYLE  313
            ++      ++  P  ++++G++K VDWYLE
Sbjct  301  NVDDLFRDIDFKPETTIQDGVNKFVDWYLE  330

689) nse in NC_000918


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  190 bits (705),  Expect = 7e-50, Method: Compositional matrix adjust.
 Identities = 137/331 (42%), Positives = 218/331 (66%), Gaps = 21/331 (6%)

Query  1    MNILVTGCAGLIGWKVSEKLLEHGHRVIGVDNLNSYYDPRLKEYRLEQLKKFENFKFYKV  60
            M+IL+TG AG+IG  ++ KL+ +GH VIGVD++N YY   LKE RL  + K ENF F KV
Sbjct  1    MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGK-ENFTFNKV  59

Query  61   NIENREALRILFQEFEFDAVINEAARAGVRYSIQNPHIYFttntlgnlnllelMKEFGVK  120
            ++EN + L  +F + + + V+N AA+AGVRYSI+NP+ Y+ +N +G +N+LE  ++F ++
Sbjct  60   KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ  119

Query  121  KLILASTSSLYAGQ-PMPFKEELPVNTPISPYAASKKAAEVTAYTYHYLYGIDVVILRYF  179
            +LI AS+SS+Y+++ + PF     ++ P+S YAA+KK+ E+ A TY  LY +    LR+F
Sbjct  120  NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF  179

Query  180  TVYGLAGRPDMAVFNFIYKTLKGIPIKVYGDGSQKRDFTYVDDVAEATVKALNLKG----  235
            TVYG  GRPDMA+F+F    +++ +I VY +G+  RDFTYVDD+ EA  + ++  +    
Sbjct  180  TVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNK  239

Query  236  ---------------YEIINVGNNKPRALKELIELIEKYTGKEVKVEYGDFHKADMRDTW  280
                           Y + N+GNN P  L E++E IE+  GKE + +Y D++ +D+ +T 
Sbjct  240  EWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPETY  299

Query  281  ADITKAKRLLGWEPKTSLEEGVKKTVEWFLE  311
            A++    R ++  P T++++GV+K V+W+LE
Sbjct  300  ANVDDLFRDIDFKPETTIQDGVNKFVDWYLE  330

690) Solca_3570 in NC_017770


> U10927|29|G29|506705|AAA64648.1|Staphylococcus_aureus_M|+|19460..20464|cap1I|-|type 
1 capsule synthesis gene
Length=334

 Score =  190 bits (705),  Expect = 8e-50, Method: Compositional matrix adjust.
 Identities = 133/330 (41%), Positives = 216/330 (66%), Gaps = 25/330 (7%)

Query  4    ILITGGAGFIGSNLIKKLLTEGKVNITCVDNFDDFYSRKVKEHNIASFINHPNFKLFEFD  63
            ILITG AGFIGS+L KKL+ +G   +  VD+++D+YS  +KE+ + S I   NF +    
Sbjct  3    ILITGTAGFIGSHLAKKLIKQGH-YVIGVDSINDYYSVSLKEDRLKS-IGKENFTFNKVK  60

Query  64   LADYKNINH-FLTKKFDTIIHLAGKAGVRPSIEQPQAYQRANVDATQNLLEFAKNQGIKQ  122
            L +Y +++  F+  + + +++LA++AGVR SIE+P++Y  +N+ +  N+LE +++  I++
Sbjct  61   LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN  120

Query  123  FIFASSSSVYGINPNTPWKEDEPL-MPISPYASTKLSCEQLGHVYSHLYDIRFLALRFFT  181
            +I+ASSSSVYG N + P    + +  P+S YA+TK S E ++H YSHLY++   +LRFFT
Sbjct  121  LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT  180

Query  182  VYGPAQRPDLAIHKFFKSILNEAAIPVFGDGNTSRDYTYIDDILQGII------------  229
            VYGP  RPD+A+ KF K+I+N+ AI V+ +GN  RD+TY+DDI+++I             
Sbjct  181  VYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPASPNKE  240

Query  230  -------ACIDYDKSNYEIINLGNSDTVTLSHLIESIEKTCNKKAIINRMPMQPGDVPKT  282
                   +   Y  + Y + N+GN+  V L +++E+IE+   K A  N M +QPGDVP T
Sbjct  241  WSGADPDPGSSY--APYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGDVPET  298

Query  283  FADVGKAHRLLGYRPTTKLTEGLKKFYEWY  312
            +A+V+   R ++++P T + +G++KF +WY
Sbjct  299  YANVDDLFRDIDFKPETTIQDGVNKFVDWY  328