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PAthogenisity Island DataBase (PAI DB)

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Homologs of hrpB gene of EF514224

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) HrpB
( YP_234286.1 )

type III secretion protein HrpB

NC_007005
(Pseudomonas syringae B728a)

3e-52

100

2) hrpB
( YP_273533.1 )

type III secretion component protein HrpB

NC_005773
(Pseudomonas syringae 1448A)

2e-50

3) hrpB
( NP_791210.1 )

type III secretion protein HrpB

NC_004578
(Pseudomonas syringae DC3000)

6e-35

4) Pmen_0029
( YP_001185536.1 )

YscI/HrpB family type III secretion apparatus protein

NC_009439
(Pseudomonas mendocina ymp)

7e-21

• Sequence Alignments

1) HrpB in NC_007005


> EF514224|29|G25|148746175|AAB05079.2|Pseudomonas_syringae_pv._syringae_61|-|21839..22213|hrpB|-|HrpB
Length=124

 Score =  197 bits (731),  Expect = 3e-52, Method: Compositional matrix adjust.
 Identities = 124/124 (100%), Positives = 124/124 (100%), Gaps = 0/124 (0%)

Query  1    MTISHLGNVKSISPELGQDVPQGLVSEPAQADVDIFTAATQPDGVSSGAPLSEHIASAIS  60
            MTISHLGNVKSISPELGQDVPQGLVSEPAQADVDIFTAATQPDGVSSGAPLSEHIASAIS
Sbjct  1    MTISHLGNVKSISPELGQDVPQGLVSEPAQADVDIFTAATQPDGVSSGAPLSEHIASAIS  60

Query  61   GGLGETEKMSQQAMRSMKKASGTGDALDIAAMTRTLSQCSLQTALTTKVVSKTAQALDKL  120
            GGLGETEKMSQQAMRSMKKASGTGDALDIAAMTRTLSQCSLQTALTTKVVSKTAQALDKL
Sbjct  61   GGLGETEKMSQQAMRSMKKASGTGDALDIAAMTRTLSQCSLQTALTTKVVSKTAQALDKL  120

Query  121  TNLQ  124
            TNLQ
Sbjct  121  TNLQ  124

2) hrpB in NC_005773


> EF514224|29|G25|148746175|AAB05079.2|Pseudomonas_syringae_pv._syringae_61|-|21839..22213|hrpB|-|HrpB
Length=124

 Score =  191 bits (708),  Expect = 2e-50, Method: Compositional matrix adjust.
 Identities = 116/124 (94%), Positives = 123/124 (99%), Gaps = 0/124 (0%)

Query  1    MTVSHLGNVKNISPELGQDVPQGLVSEPPQADVDIFTAATRPDNVSSGAPLSEHIASAIS  60
            MT+SHLGNVK+ISPELGQDVPQGLVSEP+QADVDIFTAAT+PD VSSGAPLSEHIASAIS
Sbjct  1    MTISHLGNVKSISPELGQDVPQGLVSEPAQADVDIFTAATQPDGVSSGAPLSEHIASAIS  60

Query  61   GGLGETEKMSQQAMRSMKKASGSGEALDIAAMTRTLSQCSLQTALTTKVVSKTAQAIDKL  120
            GGLGETEKMSQQAMRSMKKASG+G+ALDIAAMTRTLSQCSLQTALTTKVVSKTAQA+DKL
Sbjct  61   GGLGETEKMSQQAMRSMKKASGTGDALDIAAMTRTLSQCSLQTALTTKVVSKTAQALDKL  120

Query  121  TNLQ  124
            TNLQ
Sbjct  121  TNLQ  124

3) hrpB in NC_004578


> EF514224|29|G25|148746175|AAB05079.2|Pseudomonas_syringae_pv._syringae_61|-|21839..22213|hrpB|-|HrpB
Length=124

 Score =  140 bits (513),  Expect = 6e-35, Method: Compositional matrix adjust.
 Identities = 84/124 (68%), Positives = 105/124 (85%), Gaps = 0/124 (0%)

Query  1    MTISQLSNLKSVSPELGQNAHQGLGSEPVQADVDLFNAAMRPDSGPAASHLSDRIASALS  60
            MTIS+L+N+KS+SPELGQ+  QGL SEP QADVD+F AA +PD+ ++++ LS++IASA+S
Sbjct  1    MTISHLGNVKSISPELGQDVPQGLVSEPAQADVDIFTAATQPDGVSSGAPLSEHIASAIS  60

Query  61   ERLGSTEKLSQQALRQMKKVSNTEDPGDIVQMSRALSQCSLQMALTTKVVSKSAQALDKL  120
              LG TEK+SQQA+R MKK S T D+ DI  M+R+LSQCSLQ ALTTKVVSK+AQALDKL
Sbjct  61   GGLGETEKMSQQAMRSMKKASGTGDALDIAAMTRTLSQCSLQTALTTKVVSKTAQALDKL  120

Query  121  TNLQ  124
            TNLQ
Sbjct  121  TNLQ  124

4) Pmen_0029 in NC_009439


> EF514224|29|G25|148746175|AAB05079.2|Pseudomonas_syringae_pv._syringae_61|-|21839..22213|hrpB|-|HrpB
Length=124

 Score = 93.3 bits (335),  Expect = 7e-21, Method: Compositional matrix adjust.
 Identities = 59/126 (47%), Positives = 90/126 (72%), Gaps = 6/126 (4%)

Query  1    MSISKIDGLTS--PDL--KLDQGLVSEPSQADVDLFSSLMRDNGNTADQPSHLAAVIAET  56
            M+IS ++ + S  P+L   + QGLVSEP+QADVD+F++  + +G +++ P  L+  IA +
Sbjct  1    MTISHLGNVKSISPELGQDVPQGLVSEPAQADVDIFTAATQPDGVSSGAP--LSEHIASA  58

Query  57   VNARMTSVDDLSRQAMRHMKEAVTGNDVSAITDMSRALSQYSLQMAVTTKVVSKTGQALE  116
            +++ +   + +S+QAMR MK A    D   I+ M+R+LSQ SLQ A+TTKVVSKT+QAL+
Sbjct  59   ISGGLGETEKMSQQAMRSMKKASGTGDALDIAAMTRTLSQCSLQTALTTKVVSKTAQALD  118

Query  117  KLTNMQ  122
            KLTN+Q
Sbjct  119  KLTNLQ  124