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Homologs of lscO gene of AY144116

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) sctO
( NP_930974.1 )

Type III secretion component protein SctO

NC_005126
(Photorhabdus luminescens TTO1)

4e-53

2) sctO
( YP_003039888.1 )

type iii secretion component protein scto

NC_012962
(Photorhabdus asymbiotica ATCC 43949)

7e-39

3) YPTS_4286
( YP_001874686.1 )

type III secretion YscO fmaily protein

NC_010635
(Yersinia pseudotuberculosis PB1/+)

4e-21

4) yscO
( NP_995370.1 )

putative type III secretion protein YscO

NC_005813
(Yersinia pestis 91001)

2e-20

5) yscO
( YP_001604473.1 )

type III secretion protein YscO

NC_010157
(Yersinia pestis Angola)

2e-20

6) YPA_CD0021
( YP_636813.1 )

type III secretion protein

NC_008122
(Yersinia pestis Antiqua)

2e-20

7) yscO
( NP_395175.1 )

type III secretion apparatus component

NC_003131
(Yersinia pestis CO92)

2e-20

8) yscO
( YP_005503174.1 )

type III secretion apparatus component

NC_017153
(Yersinia pestis D106004)

2e-20

9) yscO
( YP_005506957.1 )

type III secretion apparatus component

NC_017157
(Yersinia pestis D182038)

2e-20

10) YPDSF_3976
( YP_001154605.1 )

type III secretion protein

NC_009377
(Yersinia pestis Pestoides F)

2e-20

11) yscO
( YP_003560533.1 )

type III secretion apparatus component

NC_014017
(Yersinia pestis Z176003)

2e-20

12) pYV0068
( YP_068477.1 )

yscO; type III secretion protein

NC_006153
(Yersinia pseudotuberculosis IP 32953)

2e-20

13) yscO
( YP_001004079.1 )

type III secretion system translocation protein

NC_008791
(Yersinia enterocolitica 8081)

5e-20

14) YE105_P0023
( YP_004424925.1 )

type III secretion system translocation protein

NC_015475
(Yersinia enterocolitica 105.5R(r))

2e-19

15) Y11_p0771
( YP_006007925.1 )

type III secretion spans bacterial envelope protein (YscO)

NC_017565
(Yersinia enterocolitica Y11)

2e-19

• Sequence Alignments

1) sctO in NC_005126


> AY144116|29|G29|27550060|AAO18043.1|Photorhabdus_luminescens_W14|-|24951..25412|lscO|-|LscO
Length=153

 Score =  200 bits (743),  Expect = 4e-53, Method: Compositional matrix adjust.
 Identities = 127/134 (95%), Positives = 131/134 (98%), Gaps = 0/134 (0%)

Query  1    MISRLQRIKALRVERAEKHFSLQQMKLQTARQHHQQALQTLQDYCQWRIEEEQRLFALCQ  60
            MISRLQRIKALRVERAEKHFSLQQMKLQTARQ+HQQALQTLQDY QWRIEEEQRLFALCQ
Sbjct  1    MISRLQRIKALRVERAEKHFSLQQMKLQTARQNHQQALQTLQDYGQWRIEEEQRLFALCQ  60

Query  61   GQPIDRKGLERWQQQVALLRENEAQLEKQVAEMTEKVELELRQLKECQRVLHHTRQQQEK  120
            G+PIDRKGLERWQQQVALLRENEAQLEKQ AEM EKVELELRQL+ECQRVLHH+RQQQEK
Sbjct  61   GKPIDRKGLERWQQQVALLRENEAQLEKQAAEMKEKVELELRQLQECQRVLHHARQQQEK  120

Query  121  FNELGRQQQEAIRA  134
            FNELGRQQQEAIRA
Sbjct  121  FNELGRQQQEAIRA  134

2) sctO in NC_012962


> AY144116|29|G29|27550060|AAO18043.1|Photorhabdus_luminescens_W14|-|24951..25412|lscO|-|LscO
Length=153

 Score =  153 bits (563),  Expect = 7e-39, Method: Compositional matrix adjust.
 Identities = 128/153 (84%), Positives = 145/153 (95%), Gaps = 0/153 (0%)

Query  1    MISRLQRIKALRVKRAEQHLSLQQMKLQTAHQHHEQALRNVQNYSQWRIAEEQRLFKLCQ  60
            MISRLQRIKALRV RAE+H+SLQQMKLQTA+Q+H+QAL+ +Q+Y+QWRI EEQRLF LCQ
Sbjct  1    MISRLQRIKALRVERAEKHFSLQQMKLQTARQNHQQALQTLQDYGQWRIEEEQRLFALCQ  60

Query  61   GQPIDRKGLERWQQQVALLRKNEAQLERKAAEIleqvelelrqlqecqrvlHHARRQQEK  120
            G+PIDRKGLERWQQQVALLR NEAQLE++AAE+ E+VELELRQLQECQRVLHHAR+QQEK
Sbjct  61   GKPIDRKGLERWQQQVALLRENEAQLEKQAAEMKEKVELELRQLQECQRVLHHARQQQEK  120

Query  121  FNELGRQEQEALRIqgeyqeeleqeeFHRQARV  153
            FNELGRQ+QEA+R QGEYQEELEQEEFHRQ RV
Sbjct  121  FNELGRQQQEAIRAQGEYQEELEQEEFHRQERV  153

3) YPTS_4286 in NC_010635


> AY144116|29|G29|27550060|AAO18043.1|Photorhabdus_luminescens_W14|-|24951..25412|lscO|-|LscO
Length=153

 Score = 94.1 bits (338),  Expect = 4e-21, Method: Compositional matrix adjust.
 Identities = 63/131 (49%), Positives = 98/131 (75%), Gaps = 0/131 (0%)

Query  1    MIRRLHRVKVLRVERAEKAIKTQQACLQAAHRRHQEAVQTSQDYHLWRIDEEQRLFDQRK  60
            MI RL+R+K LRVERAEK +  QQ  LQ+A++ HQ+A+QT QDY  WRI+EEQRLF   +
Sbjct  1    MISRLQRIKALRVERAEKHFSLQQMKLQTARQNHQQALQTLQDYGQWRIEEEQRLFALCQ  60

Query  61   NTTLNCKDLEKWQRQIASLREKEANYELECAKllerlanererltlCQKMLQQARHKENK  120
               ++ K+LE+WQ+Q+A LRE+EA+ E + A + E++  E  +L  CQ++L++AR++++K
Sbjct  61   GKPIDRKGLERWQQQVALLRENEAQLEKQAAEMKEKVELELRQLQECQRVLHHARQQQEK  120

Query  121  FLELVQREDED  131
            F EL ++++E 
Sbjct  121  FNELGRQQQEA  131

4) yscO in NC_010157


> AY144116|29|G29|27550060|AAO18043.1|Photorhabdus_luminescens_W14|-|24951..25412|lscO|-|LscO
Length=153

 Score = 91.8 bits (329),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 60/121 (50%), Positives = 91/121 (76%), Gaps = 0/121 (0%)

Query  1    MIRRLHRVKVLRVERAEKAIKTQQACLQAAHRRHQEAVQTSQDYHLWRIDEEQRLFDQRK  60
            MI RL+R+K LRVERAEK +  QQ  LQ+A++ HQ+A+QT QDY  WRI+EEQRLF   +
Sbjct  1    MISRLQRIKALRVERAEKHFSLQQMKLQTARQNHQQALQTLQDYGQWRIEEEQRLFALCQ  60

Query  61   NTTLNCKDLEKWQRQIASLREKEANYELECAKllerlanererltlCQKMLQQARHKENK  120
               ++ K+LE+WQ+Q+A LRE+EA+ E + A + E++  E  +L  CQ++L++AR++++K
Sbjct  61   GKPIDRKGLERWQQQVALLRENEAQLEKQAAEMKEKVELELRQLQECQRVLHHARQQQEK  120

Query  121  F  121
            F
Sbjct  121  F  121

5) YPA_CD0021 in NC_008122


> AY144116|29|G29|27550060|AAO18043.1|Photorhabdus_luminescens_W14|-|24951..25412|lscO|-|LscO
Length=153

 Score = 91.8 bits (329),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 60/121 (50%), Positives = 91/121 (76%), Gaps = 0/121 (0%)

Query  1    MIRRLHRVKVLRVERAEKAIKTQQACLQAAHRRHQEAVQTSQDYHLWRIDEEQRLFDQRK  60
            MI RL+R+K LRVERAEK +  QQ  LQ+A++ HQ+A+QT QDY  WRI+EEQRLF   +
Sbjct  1    MISRLQRIKALRVERAEKHFSLQQMKLQTARQNHQQALQTLQDYGQWRIEEEQRLFALCQ  60

Query  61   NTTLNCKDLEKWQRQIASLREKEANYELECAKllerlanererltlCQKMLQQARHKENK  120
               ++ K+LE+WQ+Q+A LRE+EA+ E + A + E++  E  +L  CQ++L++AR++++K
Sbjct  61   GKPIDRKGLERWQQQVALLRENEAQLEKQAAEMKEKVELELRQLQECQRVLHHARQQQEK  120

Query  121  F  121
            F
Sbjct  121  F  121

6) yscO in NC_005813


> AY144116|29|G29|27550060|AAO18043.1|Photorhabdus_luminescens_W14|-|24951..25412|lscO|-|LscO
Length=153

 Score = 91.8 bits (329),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 60/121 (50%), Positives = 91/121 (76%), Gaps = 0/121 (0%)

Query  1    MIRRLHRVKVLRVERAEKAIKTQQACLQAAHRRHQEAVQTSQDYHLWRIDEEQRLFDQRK  60
            MI RL+R+K LRVERAEK +  QQ  LQ+A++ HQ+A+QT QDY  WRI+EEQRLF   +
Sbjct  1    MISRLQRIKALRVERAEKHFSLQQMKLQTARQNHQQALQTLQDYGQWRIEEEQRLFALCQ  60

Query  61   NTTLNCKDLEKWQRQIASLREKEANYELECAKllerlanererltlCQKMLQQARHKENK  120
               ++ K+LE+WQ+Q+A LRE+EA+ E + A + E++  E  +L  CQ++L++AR++++K
Sbjct  61   GKPIDRKGLERWQQQVALLRENEAQLEKQAAEMKEKVELELRQLQECQRVLHHARQQQEK  120

Query  121  F  121
            F
Sbjct  121  F  121

7) yscO in NC_003131


> AY144116|29|G29|27550060|AAO18043.1|Photorhabdus_luminescens_W14|-|24951..25412|lscO|-|LscO
Length=153

 Score = 91.8 bits (329),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 60/121 (50%), Positives = 91/121 (76%), Gaps = 0/121 (0%)

Query  1    MIRRLHRVKVLRVERAEKAIKTQQACLQAAHRRHQEAVQTSQDYHLWRIDEEQRLFDQRK  60
            MI RL+R+K LRVERAEK +  QQ  LQ+A++ HQ+A+QT QDY  WRI+EEQRLF   +
Sbjct  1    MISRLQRIKALRVERAEKHFSLQQMKLQTARQNHQQALQTLQDYGQWRIEEEQRLFALCQ  60

Query  61   NTTLNCKDLEKWQRQIASLREKEANYELECAKllerlanererltlCQKMLQQARHKENK  120
               ++ K+LE+WQ+Q+A LRE+EA+ E + A + E++  E  +L  CQ++L++AR++++K
Sbjct  61   GKPIDRKGLERWQQQVALLRENEAQLEKQAAEMKEKVELELRQLQECQRVLHHARQQQEK  120

Query  121  F  121
            F
Sbjct  121  F  121

8) yscO in NC_017153


> AY144116|29|G29|27550060|AAO18043.1|Photorhabdus_luminescens_W14|-|24951..25412|lscO|-|LscO
Length=153

 Score = 91.8 bits (329),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 60/121 (50%), Positives = 91/121 (76%), Gaps = 0/121 (0%)

Query  1    MIRRLHRVKVLRVERAEKAIKTQQACLQAAHRRHQEAVQTSQDYHLWRIDEEQRLFDQRK  60
            MI RL+R+K LRVERAEK +  QQ  LQ+A++ HQ+A+QT QDY  WRI+EEQRLF   +
Sbjct  1    MISRLQRIKALRVERAEKHFSLQQMKLQTARQNHQQALQTLQDYGQWRIEEEQRLFALCQ  60

Query  61   NTTLNCKDLEKWQRQIASLREKEANYELECAKllerlanererltlCQKMLQQARHKENK  120
               ++ K+LE+WQ+Q+A LRE+EA+ E + A + E++  E  +L  CQ++L++AR++++K
Sbjct  61   GKPIDRKGLERWQQQVALLRENEAQLEKQAAEMKEKVELELRQLQECQRVLHHARQQQEK  120

Query  121  F  121
            F
Sbjct  121  F  121

9) yscO in NC_017157


> AY144116|29|G29|27550060|AAO18043.1|Photorhabdus_luminescens_W14|-|24951..25412|lscO|-|LscO
Length=153

 Score = 91.8 bits (329),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 60/121 (50%), Positives = 91/121 (76%), Gaps = 0/121 (0%)

Query  1    MIRRLHRVKVLRVERAEKAIKTQQACLQAAHRRHQEAVQTSQDYHLWRIDEEQRLFDQRK  60
            MI RL+R+K LRVERAEK +  QQ  LQ+A++ HQ+A+QT QDY  WRI+EEQRLF   +
Sbjct  1    MISRLQRIKALRVERAEKHFSLQQMKLQTARQNHQQALQTLQDYGQWRIEEEQRLFALCQ  60

Query  61   NTTLNCKDLEKWQRQIASLREKEANYELECAKllerlanererltlCQKMLQQARHKENK  120
               ++ K+LE+WQ+Q+A LRE+EA+ E + A + E++  E  +L  CQ++L++AR++++K
Sbjct  61   GKPIDRKGLERWQQQVALLRENEAQLEKQAAEMKEKVELELRQLQECQRVLHHARQQQEK  120

Query  121  F  121
            F
Sbjct  121  F  121

10) YPDSF_3976 in NC_009377


> AY144116|29|G29|27550060|AAO18043.1|Photorhabdus_luminescens_W14|-|24951..25412|lscO|-|LscO
Length=153

 Score = 91.8 bits (329),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 60/121 (50%), Positives = 91/121 (76%), Gaps = 0/121 (0%)

Query  1    MIRRLHRVKVLRVERAEKAIKTQQACLQAAHRRHQEAVQTSQDYHLWRIDEEQRLFDQRK  60
            MI RL+R+K LRVERAEK +  QQ  LQ+A++ HQ+A+QT QDY  WRI+EEQRLF   +
Sbjct  1    MISRLQRIKALRVERAEKHFSLQQMKLQTARQNHQQALQTLQDYGQWRIEEEQRLFALCQ  60

Query  61   NTTLNCKDLEKWQRQIASLREKEANYELECAKllerlanererltlCQKMLQQARHKENK  120
               ++ K+LE+WQ+Q+A LRE+EA+ E + A + E++  E  +L  CQ++L++AR++++K
Sbjct  61   GKPIDRKGLERWQQQVALLRENEAQLEKQAAEMKEKVELELRQLQECQRVLHHARQQQEK  120

Query  121  F  121
            F
Sbjct  121  F  121

11) yscO in NC_014017


> AY144116|29|G29|27550060|AAO18043.1|Photorhabdus_luminescens_W14|-|24951..25412|lscO|-|LscO
Length=153

 Score = 91.8 bits (329),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 60/121 (50%), Positives = 91/121 (76%), Gaps = 0/121 (0%)

Query  1    MIRRLHRVKVLRVERAEKAIKTQQACLQAAHRRHQEAVQTSQDYHLWRIDEEQRLFDQRK  60
            MI RL+R+K LRVERAEK +  QQ  LQ+A++ HQ+A+QT QDY  WRI+EEQRLF   +
Sbjct  1    MISRLQRIKALRVERAEKHFSLQQMKLQTARQNHQQALQTLQDYGQWRIEEEQRLFALCQ  60

Query  61   NTTLNCKDLEKWQRQIASLREKEANYELECAKllerlanererltlCQKMLQQARHKENK  120
               ++ K+LE+WQ+Q+A LRE+EA+ E + A + E++  E  +L  CQ++L++AR++++K
Sbjct  61   GKPIDRKGLERWQQQVALLRENEAQLEKQAAEMKEKVELELRQLQECQRVLHHARQQQEK  120

Query  121  F  121
            F
Sbjct  121  F  121

12) pYV0068 in NC_006153


> AY144116|29|G29|27550060|AAO18043.1|Photorhabdus_luminescens_W14|-|24951..25412|lscO|-|LscO
Length=153

 Score = 91.8 bits (329),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 60/121 (50%), Positives = 91/121 (76%), Gaps = 0/121 (0%)

Query  1    MIRRLHRVKVLRVERAEKAIKTQQACLQAAHRRHQEAVQTSQDYHLWRIDEEQRLFDQRK  60
            MI RL+R+K LRVERAEK +  QQ  LQ+A++ HQ+A+QT QDY  WRI+EEQRLF   +
Sbjct  1    MISRLQRIKALRVERAEKHFSLQQMKLQTARQNHQQALQTLQDYGQWRIEEEQRLFALCQ  60

Query  61   NTTLNCKDLEKWQRQIASLREKEANYELECAKllerlanererltlCQKMLQQARHKENK  120
               ++ K+LE+WQ+Q+A LRE+EA+ E + A + E++  E  +L  CQ++L++AR++++K
Sbjct  61   GKPIDRKGLERWQQQVALLRENEAQLEKQAAEMKEKVELELRQLQECQRVLHHARQQQEK  120

Query  121  F  121
            F
Sbjct  121  F  121

13) yscO in NC_008791


> AY144116|29|G29|27550060|AAO18043.1|Photorhabdus_luminescens_W14|-|24951..25412|lscO|-|LscO
Length=153

 Score = 90.5 bits (324),  Expect = 5e-20, Method: Compositional matrix adjust.
 Identities = 59/121 (49%), Positives = 90/121 (75%), Gaps = 0/121 (0%)

Query  1    MIRRLHRVKVLRVERAEQAIKTQQACLQAAHRRHQEAVQTSQDYHLWRIDEEQRLFDQRK  60
            MI RL+R+K LRVERAE+ +  QQ  LQ+A++ HQ+A+QT QDY  WRI+EEQRLF   +
Sbjct  1    MISRLQRIKALRVERAEKHFSLQQMKLQTARQNHQQALQTLQDYGQWRIEEEQRLFALCQ  60

Query  61   NTTLNCKDLEKWQRQIASLREKEANYELECAKllerlanererlTSCQKTLQQARHKENK  120
               ++ K+LE+WQ+Q+A LRE+EA+ E + A + E++  E  +L  CQ+ L++AR++++K
Sbjct  61   GKPIDRKGLERWQQQVALLRENEAQLEKQAAEMKEKVELELRQLQECQRVLHHARQQQEK  120

Query  121  F  121
            F
Sbjct  121  F  121

14) YE105_P0023 in NC_015475


> AY144116|29|G29|27550060|AAO18043.1|Photorhabdus_luminescens_W14|-|24951..25412|lscO|-|LscO
Length=153

 Score = 88.4 bits (316),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 61/129 (48%), Positives = 95/129 (74%), Gaps = 0/129 (0%)

Query  1    MIRRLHRVKVLRVERAEQAIKTQQACLQAAHRRHQEAVQTSQDYHLWRIDEEQRLFDQRK  60
            MI RL+R+K LRVERAE+ +  QQ  LQ+A++ HQ+A+QT QDY  WRI+EEQRLF   +
Sbjct  1    MISRLQRIKALRVERAEKHFSLQQMKLQTARQNHQQALQTLQDYGQWRIEEEQRLFALCQ  60

Query  61   NTTLNCKDLEKWQRQIASLREKEANYelecaklleclaneRERLTLCQKTLQQARHKENK  120
               ++ K+LE+WQ+Q+A LRE+EA+ E + A + E +  E  +L  CQ+ L++AR++++K
Sbjct  61   GKPIDRKGLERWQQQVALLRENEAQLEKQAAEMKEKVELELRQLQECQRVLHHARQQQEK  120

Query  121  FLELVQRED  129
            F EL ++++
Sbjct  121  FNELGRQQQ  129

15) Y11_p0771 in NC_017565


> AY144116|29|G29|27550060|AAO18043.1|Photorhabdus_luminescens_W14|-|24951..25412|lscO|-|LscO
Length=153

 Score = 88.4 bits (316),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 61/129 (48%), Positives = 95/129 (74%), Gaps = 0/129 (0%)

Query  1    MIRRLHRVKVLRVERAEQAIKTQQACLQAAHRRHQEAVQTSQDYHLWRIDEEQRLFDQRK  60
            MI RL+R+K LRVERAE+ +  QQ  LQ+A++ HQ+A+QT QDY  WRI+EEQRLF   +
Sbjct  1    MISRLQRIKALRVERAEKHFSLQQMKLQTARQNHQQALQTLQDYGQWRIEEEQRLFALCQ  60

Query  61   NTTLNCKDLEKWQRQIASLREKEANYelecaklleclaneRERLTLCQKTLQQARHKENK  120
               ++ K+LE+WQ+Q+A LRE+EA+ E + A + E +  E  +L  CQ+ L++AR++++K
Sbjct  61   GKPIDRKGLERWQQQVALLRENEAQLEKQAAEMKEKVELELRQLQECQRVLHHARQQQEK  120

Query  121  FLELVQRED  129
            F EL ++++
Sbjct  121  FNELGRQQQ  129