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PAthogenisity Island DataBase (PAI DB)

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Homologs of ccrA1 gene of AB033763

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) ccrA1
( YP_184952.1 )

cassette chromosome recombinase A1

NC_002951
(Staphylococcus aureus COL)

0.0

100

2) ccrA1
( YP_007582643.1 )

Cassette chromosome recombinase A1

NC_020536
(Staphylococcus aureus ST228)

0.0

100

3) ccrA1
( YP_007620358.1 )

Cassette chromosome recombinase A1

NC_020566
(Staphylococcus aureus ST228)

0.0

100

4) ccrA1
( YP_007622344.1 )

Cassette chromosome recombinase A1

NC_020568
(Staphylococcus aureus ST228)

0.0

100

5) ccrA1
( YP_007576656.1 )

Cassette chromosome recombinase A1

NC_020529
(Staphylococcus aureus ST228 (isolate=10388))

0.0

100

6) ccrA1
( YP_007618371.1 )

Cassette chromosome recombinase A1

NC_020564
(Staphylococcus aureus ST228 (isolate=10497))

0.0

100

7) ccrA1
( YP_007578664.1 )

Cassette chromosome recombinase A1

NC_020532
(Staphylococcus aureus ST228 (isolate=15532))

0.0

100

8) ccrA1
( YP_007580628.1 )

Cassette chromosome recombinase A1

NC_020533
(Staphylococcus aureus ST228 (isolate=16035))

0.0

100

9) ccrA1
( YP_007584607.1 )

Cassette chromosome recombinase A1

NC_020537
(Staphylococcus aureus ST228 (isolate=18412))

0.0

100

10) ccrA1
( YP_042166.1 )

site-specific recombinase

NC_002953
(Staphylococcus aureus MSSA476)

0.0

11) SSP0036
( YP_300126.1 )

cassette chromosome recombinase A

NC_007350
(Staphylococcus saprophyticus ATCC 15305)

0.0

12) ccrA1
( YP_005754052.1 )

site-specific recombinase CcrA1

NC_017349
(Staphylococcus aureus LGA251)

0.0

13) ccrA
( YP_008167248.1 )

cassette chromosome recombinase A

NC_021670
(Staphylococcus aureus Bmb9393)

4e-172

14) ccrA
( YP_005743457.1 )

cassette chromosome recombinase A1

NC_017341
(Staphylococcus aureus JKD6008)

4e-172

15) SAT0131_00056
( YP_005751354.1 )

Cassette chromosome recombinase A3

NC_017347
(Staphylococcus aureus T0131)

4e-172

16) ccrA
( YP_005730116.1 )

site-specific recombinase CcrA

NC_017331
(Staphylococcus aureus TW20)

4e-172

17) ccrA
( YP_039531.1 )

site-specific recombinase

NC_002952
(Staphylococcus aureus MRSA252)

1e-166

18) SERP2498
( YP_190040.1 )

cassette chromosome recombinase A

NC_002976
(Staphylococcus epidermidis RP62A)

1e-166

19) ccrA
( NP_644854.1 )

cassette chromosome recombinase A

NC_003923
(Staphylococcus aureus MW2)

2e-162

20) MS7_0070
( YP_005756537.1 )

resolvase, N terminal domain protein

NC_017351
(Staphylococcus aureus 11819-97)

3e-162

21) ccrA
( YP_492758.1 )

cassette chromosome recombinase A

NC_007793
(Staphylococcus aureus FPR3757)

3e-162

22) ccrA
( YP_005738213.1 )

cassette chromosome recombinase A1

NC_017338
(Staphylococcus aureus JKD6159)

3e-162

23) SAMSHR1132_00410
( YP_005324564.1 )

site-specific recombinase

NC_016941
(Staphylococcus aureus MSHR1132)

3e-162

24) ccrA
( YP_001573964.1 )

cassette chromosome recombinase A

NC_010079
(Staphylococcus aureus TCH1516)

3e-162

25) ccrA
( YP_006236414.1 )

site-specific recombinase

NC_017763
(Staphylococcus aureus HO 5096 0412)

4e-162

26) SAKOR_00048
( YP_008490232.1 )

Site-specific recombinase

NC_022226
(Staphylococcus aureus CN1)

8e-162

27) SE0037
( NP_763592.1 )

cassette chromosome recombinase A

NC_004461
(Staphylococcus epidermidis ATCC 12228)

2e-161

28) ccrA
( YP_005740812.1 )

Cassette chromosome recombinase A

NC_017340
(Staphylococcus aureus 04-02981)

5e-161

29) CA347_59
( YP_008126943.1 )

recombinase family protein

NC_021554
(Staphylococcus aureus CA-347)

5e-161

30) SaurJH1_0050
( YP_001315203.1 )

resolvase domain-containing protein

NC_009632
(Staphylococcus aureus JH1)

5e-161

31) SaurJH9_0049
( YP_001245437.1 )

resolvase

NC_009487
(Staphylococcus aureus JH9)

5e-161

32) ccrA
( YP_001440651.1 )

cassette chromosome recombinase A

NC_009782
(Staphylococcus aureus Mu3)

5e-161

33) ccrA
( NP_370586.1 )

cassette chromosome recombinase A

NC_002758
(Staphylococcus aureus Mu50)

5e-161

34) ccrA
( NP_373298.1 )

cassette chromosome recombinase A

NC_002745
(Staphylococcus aureus N315)

5e-161

35) ccrA
( YP_005746509.1 )

site-specific recombinase

NC_017342
(Staphylococcus aureus TCH60)

1e-160

36) BN843_710
( YP_007867150.1 )

Cassette chromosome recombinase A

NC_021059
(Staphylococcus aureus M1)

4e-160

37) ccrA
( YP_008586688.1 )

cassette chromosome recombinase A

NC_022443
(Staphylococcus aureus SA40)

8e-160

38) BN843_350
( YP_007867114.1 )

Cassette chromosome recombinase A

NC_021059
(Staphylococcus aureus M1)

2e-116

39) SE0057
( NP_763612.1 )

cassette chromosome recombinase A

NC_004461
(Staphylococcus epidermidis ATCC 12228)

2e-116

• Sequence Alignments

1) ccrA1 in NC_002951


> AB033763|29|G28|6332766|BAA86648.1|Staphylococcus_aureus_NCTC10442|+|23692..25041|ccrA1|-|cassette 
chromosome recombinase 
A1
Length=449

 Score =  731 bits (2764),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 449/449 (100%), Positives = 449/449 (100%), Gaps = 0/449 (0%)

Query  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60
            MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL
Sbjct  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60

Query  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120
            IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF
Sbjct  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120

Query  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180
            ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180

Query  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240
            YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI
Sbjct  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240

Query  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300
            YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR
Sbjct  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300

Query  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360
            FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI
Sbjct  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360

Query  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420
            EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN
Sbjct  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420

Query  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449
            ISKNKSLAGIYFKNEPLNIVKQTMELSIV
Sbjct  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449

2) ccrA1 in NC_020529


> AB033763|29|G28|6332766|BAA86648.1|Staphylococcus_aureus_NCTC10442|+|23692..25041|ccrA1|-|cassette 
chromosome recombinase 
A1
Length=449

 Score =  731 bits (2764),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 449/449 (100%), Positives = 449/449 (100%), Gaps = 0/449 (0%)

Query  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60
            MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL
Sbjct  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60

Query  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120
            IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF
Sbjct  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120

Query  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180
            ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180

Query  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240
            YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI
Sbjct  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240

Query  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300
            YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR
Sbjct  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300

Query  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360
            FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI
Sbjct  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360

Query  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420
            EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN
Sbjct  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420

Query  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449
            ISKNKSLAGIYFKNEPLNIVKQTMELSIV
Sbjct  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449

3) ccrA1 in NC_020564


> AB033763|29|G28|6332766|BAA86648.1|Staphylococcus_aureus_NCTC10442|+|23692..25041|ccrA1|-|cassette 
chromosome recombinase 
A1
Length=449

 Score =  731 bits (2764),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 449/449 (100%), Positives = 449/449 (100%), Gaps = 0/449 (0%)

Query  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60
            MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL
Sbjct  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60

Query  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120
            IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF
Sbjct  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120

Query  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180
            ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180

Query  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240
            YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI
Sbjct  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240

Query  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300
            YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR
Sbjct  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300

Query  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360
            FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI
Sbjct  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360

Query  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420
            EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN
Sbjct  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420

Query  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449
            ISKNKSLAGIYFKNEPLNIVKQTMELSIV
Sbjct  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449

4) ccrA1 in NC_020532


> AB033763|29|G28|6332766|BAA86648.1|Staphylococcus_aureus_NCTC10442|+|23692..25041|ccrA1|-|cassette 
chromosome recombinase 
A1
Length=449

 Score =  731 bits (2764),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 449/449 (100%), Positives = 449/449 (100%), Gaps = 0/449 (0%)

Query  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60
            MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL
Sbjct  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60

Query  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120
            IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF
Sbjct  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120

Query  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180
            ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180

Query  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240
            YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI
Sbjct  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240

Query  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300
            YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR
Sbjct  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300

Query  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360
            FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI
Sbjct  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360

Query  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420
            EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN
Sbjct  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420

Query  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449
            ISKNKSLAGIYFKNEPLNIVKQTMELSIV
Sbjct  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449

5) ccrA1 in NC_020533


> AB033763|29|G28|6332766|BAA86648.1|Staphylococcus_aureus_NCTC10442|+|23692..25041|ccrA1|-|cassette 
chromosome recombinase 
A1
Length=449

 Score =  731 bits (2764),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 449/449 (100%), Positives = 449/449 (100%), Gaps = 0/449 (0%)

Query  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60
            MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL
Sbjct  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60

Query  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120
            IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF
Sbjct  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120

Query  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180
            ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180

Query  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240
            YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI
Sbjct  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240

Query  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300
            YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR
Sbjct  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300

Query  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360
            FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI
Sbjct  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360

Query  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420
            EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN
Sbjct  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420

Query  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449
            ISKNKSLAGIYFKNEPLNIVKQTMELSIV
Sbjct  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449

6) ccrA1 in NC_020537


> AB033763|29|G28|6332766|BAA86648.1|Staphylococcus_aureus_NCTC10442|+|23692..25041|ccrA1|-|cassette 
chromosome recombinase 
A1
Length=449

 Score =  731 bits (2764),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 449/449 (100%), Positives = 449/449 (100%), Gaps = 0/449 (0%)

Query  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60
            MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL
Sbjct  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60

Query  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120
            IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF
Sbjct  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120

Query  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180
            ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180

Query  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240
            YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI
Sbjct  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240

Query  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300
            YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR
Sbjct  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300

Query  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360
            FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI
Sbjct  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360

Query  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420
            EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN
Sbjct  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420

Query  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449
            ISKNKSLAGIYFKNEPLNIVKQTMELSIV
Sbjct  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449

7) ccrA1 in NC_020566


> AB033763|29|G28|6332766|BAA86648.1|Staphylococcus_aureus_NCTC10442|+|23692..25041|ccrA1|-|cassette 
chromosome recombinase 
A1
Length=449

 Score =  731 bits (2764),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 449/449 (100%), Positives = 449/449 (100%), Gaps = 0/449 (0%)

Query  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60
            MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL
Sbjct  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60

Query  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120
            IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF
Sbjct  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120

Query  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180
            ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180

Query  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240
            YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI
Sbjct  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240

Query  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300
            YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR
Sbjct  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300

Query  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360
            FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI
Sbjct  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360

Query  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420
            EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN
Sbjct  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420

Query  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449
            ISKNKSLAGIYFKNEPLNIVKQTMELSIV
Sbjct  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449

8) ccrA1 in NC_020536


> AB033763|29|G28|6332766|BAA86648.1|Staphylococcus_aureus_NCTC10442|+|23692..25041|ccrA1|-|cassette 
chromosome recombinase 
A1
Length=449

 Score =  731 bits (2764),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 449/449 (100%), Positives = 449/449 (100%), Gaps = 0/449 (0%)

Query  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60
            MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL
Sbjct  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60

Query  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120
            IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF
Sbjct  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120

Query  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180
            ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180

Query  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240
            YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI
Sbjct  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240

Query  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300
            YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR
Sbjct  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300

Query  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360
            FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI
Sbjct  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360

Query  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420
            EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN
Sbjct  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420

Query  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449
            ISKNKSLAGIYFKNEPLNIVKQTMELSIV
Sbjct  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449

9) ccrA1 in NC_020568


> AB033763|29|G28|6332766|BAA86648.1|Staphylococcus_aureus_NCTC10442|+|23692..25041|ccrA1|-|cassette 
chromosome recombinase 
A1
Length=449

 Score =  731 bits (2764),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 449/449 (100%), Positives = 449/449 (100%), Gaps = 0/449 (0%)

Query  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60
            MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL
Sbjct  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60

Query  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120
            IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF
Sbjct  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120

Query  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180
            ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180

Query  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240
            YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI
Sbjct  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240

Query  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300
            YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR
Sbjct  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300

Query  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360
            FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI
Sbjct  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360

Query  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420
            EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN
Sbjct  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420

Query  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449
            ISKNKSLAGIYFKNEPLNIVKQTMELSIV
Sbjct  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449

10) ccrA1 in NC_002953


> AB033763|29|G28|6332766|BAA86648.1|Staphylococcus_aureus_NCTC10442|+|23692..25041|ccrA1|-|cassette 
chromosome recombinase 
A1
Length=449

 Score =  699 bits (2644),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 425/449 (95%), Positives = 439/449 (98%), Gaps = 0/449 (0%)

Query  1    MKQAIGYLRQSTTKQQSLAAQKQTIKALAEKHNIQHITFYSDKQSGRTDKRNGYQQITEL  60
            MKQAIGYLRQSTTKQQSLAAQKQTI ALA KHNIQ ITFYSDKQSGRTDKRNGYQQITEL
Sbjct  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60

Query  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQTYHVHILSVHDGYFDMDKAFDRLKLNIF  120
            IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQ YHVHILSVHDGYFDMDKAFDRLKLNIF
Sbjct  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120

Query  121  ISLAELESDNIGEQVKNGIKEKARQGKLITTHAPFGYHYHNGTFTIDTVKSPTVKAVFNY  180
            ISLAELESDNIGEQVKNGIKEKA+QGK+ITTHAPFGYHYHNGTFTIDTVK+PTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180

Query  181  YLQGYGYKKIAQYLEADDNFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240
            YLQGYGYKKIAQYLEADD+FINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI
Sbjct  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240

Query  241  YEEAQVTRTQKQVKCKPSENQLKQKIKCPYCHSTLTNMTVRKPDHSLRYYVCPQNMNNAR  300
            YEEAQVTRTQK VK KPSENQLKQKIKCPYC+STLTNMT+RK +H+LRYYVCPQNMN +R
Sbjct  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300

Query  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIEIKTTLNHEQLI  360
            FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIE KTTLNHEQLI
Sbjct  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360

Query  361  EKLAQGKIDAETFKEQTHSLHQQSKPISSISAYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420
            EKLAQ+KIDAETF+EQT+SL+QQSKPISSIS+YQIRKAFQNIIQQRFTLNMLYPYIDEIN
Sbjct  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420

Query  421  ISKNKSLAGIYFKNEPLNIVKQTMKLSIV  449
            ISKNKSLAGIYFKNEPLNIVKQTM LSIV
Sbjct  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449

11) SSP0036 in NC_007350


> AB033763|29|G28|6332766|BAA86648.1|Staphylococcus_aureus_NCTC10442|+|23692..25041|ccrA1|-|cassette 
chromosome recombinase 
A1
Length=449

 Score =  681 bits (2574),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 403/449 (90%), Positives = 433/449 (97%), Gaps = 0/449 (0%)

Query  1    MKQAMGYLRQSTTKQQSLAAQKQTIKVLAEKHNIQHITFYSDKQSGRTDKRNGYQQITEL  60
            MKQA+GYLRQSTTKQQSLAAQKQTI  LA KHNIQ ITFYSDKQSGRTDKRNGYQQITEL
Sbjct  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60

Query  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQTYHVHILSVRDGYFDMNKAFDRLKLNIF  120
            IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQ YHVHILSV+DGYFDM+KAFDRLKLNIF
Sbjct  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120

Query  121  ISLAELESDNIGEQVKNGLREKAKQGKLITTHAPFGYHYHNGTFTIDTVKSPTVKAVFNY  180
            ISLAELESDNIGEQVKNG++EKAKQGK+ITTHAPFGYHYHNGTFTIDTVK+PTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180

Query  181  YLQGYGYKKIAQYLEADNKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240
            YLQGYGYKKIAQYLEAD+KFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI
Sbjct  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240

Query  241  YEEAQVTRTQKQVKRKPSENQLKQKIKCPYCHSTLTNMTVRKPDHSLRYYVCPQNMNNAR  300
            YEEAQVTRTQK VKRKPSENQLKQKIKCPYC+STLTNMT+RK +H+LRYYVCPQNMN +R
Sbjct  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300

Query  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKKQKDIEAKNTLTQEQLI  360
            FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLK+Q+DIE+K TL +EQLI
Sbjct  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360

Query  361  EKLAQGKIDAESFRKQTQSSRQHSKPILSINAYQIQKAFQNIIQQRFTLNMLYPYIDEIH  420
            EKLAQ+KIDAE+FR QTQS RQ+SKPI SI++YQI+KAFQNIIQQRFTLNMLYPYIDEI+
Sbjct  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420

Query  421  INKNKTLTGIYFKNEPLNIVNQTTQSTIA  449
            I+KNK+L+GIYFKNEPLNIV+QT + +I 
Sbjct  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449

12) ccrA1 in NC_017349


> AB033763|29|G28|6332766|BAA86648.1|Staphylococcus_aureus_NCTC10442|+|23692..25041|ccrA1|-|cassette 
chromosome recombinase 
A1
Length=449

 Score =  652 bits (2465),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 377/449 (84%), Positives = 423/449 (95%), Gaps = 0/449 (0%)

Query  1    MKQAIGYLRQSTLKQQSLSAQKQTIKTLAEKHNIQHIIFYSDKQSGRTENRTGYQQITEL  60
            MKQAIGYLRQST KQQSL+AQKQTI +LA KHNIQ I FYSDKQSGRT++R GYQQITEL
Sbjct  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60

Query  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQTYHVHILSVHDGYFDMNKAFDRLKLNIF  120
            IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQ YHVHILSVHDGYFDM+KAFDRLKLNIF
Sbjct  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120

Query  121  ISLAELESDNIGEQVKNGLREKAKQGKLITTHAPFGYHYHNGTFMINNIEAPTVKAVFSY  180
            ISLAELESDNIGEQVKNG++EKAKQGK+ITTHAPFGYHYHNGTF I+ + APTVKAVF+Y
Sbjct  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180

Query  181  YLQGYGYKKIAQYLEDDEKFINRKPYQVRNIIMNPNYCGRVINQYGRYDNMCPSIVSTSI  240
            YLQGYGYKKIAQYLE D+KFINRKPYQVRNII+NPNYCGRVINQYG+Y+NM P+IVST+I
Sbjct  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240

Query  241  YEQAQAIRSQKQLKRTSSANQLKQKIKCPYCGSTLTNITIRKKHRTLRYYVCPQNMNASR  300
            YE+AQ  R+QK +KR +S NQLKQKIKCPYC+STLTN+TIRKKH+TLRYYVCPQNMNASR
Sbjct  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300

Query  301  FVCEFKGINAQSLEASVLVTCQDFFQNQHLYSKINHTIQKRLKKQKDIEAKSTVTQEQLI  360
            FVCEFKGINAQ LE+SVL TCQDFFQNQ+LYSKINHTIQ+RLK+Q+DIE+K+T+ +EQLI
Sbjct  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360

Query  361  EKLAQGKIDAETFREQTQSFRQQSKPITSIHTHQIQKALQNVIQQSFTLNMLYPYIDEIH  420
            EKLAQ+KIDAETFREQTQS+RQQSKPI+SI T QI+KA+QN+IQQ FTLNMLYPYIDEI+
Sbjct  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420

Query  421  ITKSKTLTGIYFKNEPLNIVNQTAQSSIA  449
            I+K+K+L+GIYFKNEPLNIV+QT + SI 
Sbjct  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449

13) ccrA in NC_021670


> AB033763|29|G28|6332766|BAA86648.1|Staphylococcus_aureus_NCTC10442|+|23692..25041|ccrA1|-|cassette 
chromosome recombinase 
A1
Length=449

 Score =  597 bits (2254),  Expect = 4e-172, Method: Compositional matrix adjust.
 Identities = 351/449 (79%), Positives = 401/449 (90%), Gaps = 1/449 (0%)

Query  1    MKRAIGYLRQSTTKQQSLPAQKQAIELLAPKHNIQNIQYISDKQSGRTDNRTGYQQVTER  60
            MK+AIGYLRQSTTKQQSL+AQKQ+IE LA KHNIQ I + SDKQSGRTD+R GYQQ+TE 
Sbjct  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60

Query  61   IQQRQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120
            IQQ QCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF
Sbjct  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120

Query  121  MSLAELESDNIGEQVKNGLREKAKQGKLITTHAPFGYHYQNGTFIINNDESPTVKAVFNY  180
            +SLAELESDNIGEQVKNG++EKAKQGK+ITTHAPFGYHY+NGTF I+   +PTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180

Query  181  YLQGYGYKKIAQYLEDDNKLITRKPYQVRNIIMNPNYCGRVINQYGQYNNMVPPIVSATK  240
            YLQGYGYKKIAQYLE D+K+I RKPYQVRNII+NPNYCGRVINQYGQY+NM P+IVS+T 
Sbjct  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240

Query  241  YEHAQAIRNKKQLHCIPSENQLKQKIKCPCCDSTLTNMTIRKK-HTLRYYICPKNMNESR  299
            YE+AQ  R +K +   PSENQLKQKIKCP CDSTLTNMTIRKK HTLRYY+CP+NMN SR
Sbjct  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300

Query  300  FVCSFKGINAQKLEVQVLATCQNFFQNQQLYSKINNAIHQRLKKQRVIEAKSTLTQEQLI  359
            FVC FKGINAQ LE  VLATCQ+FFQNQQLYSKIN++I+QRLK+QR IE+K+TL +EQLI
Sbjct  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360

Query  360  DKLAKGMIDAESFRKQTHLMNQKHKTISSISDNQLQTSLQKVIQKSFTLNMLHPYIDEIR  419
            +KLA++ IDAE+FR QT+ + Q+ K ISSIS  Q++ ++Q++IQ+ FTLNML PYIDEI 
Sbjct  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420

Query  420  ITKNKALVGIYFKNEPLNIVNQTSQSSIA  448
            I+KNK+L GIYFKNEPLNIV+QT + SI 
Sbjct  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449

14) ccrA in NC_017341


> AB033763|29|G28|6332766|BAA86648.1|Staphylococcus_aureus_NCTC10442|+|23692..25041|ccrA1|-|cassette 
chromosome recombinase 
A1
Length=449

 Score =  597 bits (2254),  Expect = 4e-172, Method: Compositional matrix adjust.
 Identities = 351/449 (79%), Positives = 401/449 (90%), Gaps = 1/449 (0%)

Query  1    MKRAIGYLRQSTTKQQSLPAQKQAIELLAPKHNIQNIQYISDKQSGRTDNRTGYQQVTER  60
            MK+AIGYLRQSTTKQQSL+AQKQ+IE LA KHNIQ I + SDKQSGRTD+R GYQQ+TE 
Sbjct  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60

Query  61   IQQRQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120
            IQQ QCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF
Sbjct  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120

Query  121  MSLAELESDNIGEQVKNGLREKAKQGKLITTHAPFGYHYQNGTFIINNDESPTVKAVFNY  180
            +SLAELESDNIGEQVKNG++EKAKQGK+ITTHAPFGYHY+NGTF I+   +PTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180

Query  181  YLQGYGYKKIAQYLEDDNKLITRKPYQVRNIIMNPNYCGRVINQYGQYNNMVPPIVSATK  240
            YLQGYGYKKIAQYLE D+K+I RKPYQVRNII+NPNYCGRVINQYGQY+NM P+IVS+T 
Sbjct  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240

Query  241  YEHAQAIRNKKQLHCIPSENQLKQKIKCPCCDSTLTNMTIRKK-HTLRYYICPKNMNESR  299
            YE+AQ  R +K +   PSENQLKQKIKCP CDSTLTNMTIRKK HTLRYY+CP+NMN SR
Sbjct  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300

Query  300  FVCSFKGINAQKLEVQVLATCQNFFQNQQLYSKINNAIHQRLKKQRVIEAKSTLTQEQLI  359
            FVC FKGINAQ LE  VLATCQ+FFQNQQLYSKIN++I+QRLK+QR IE+K+TL +EQLI
Sbjct  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360

Query  360  DKLAKGMIDAESFRKQTHLMNQKHKTISSISDNQLQTSLQKVIQKSFTLNMLHPYIDEIR  419
            +KLA++ IDAE+FR QT+ + Q+ K ISSIS  Q++ ++Q++IQ+ FTLNML PYIDEI 
Sbjct  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420

Query  420  ITKNKALVGIYFKNEPLNIVNQTSQSSIA  448
            I+KNK+L GIYFKNEPLNIV+QT + SI 
Sbjct  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449

15) SAT0131_00056 in NC_017347


> AB033763|29|G28|6332766|BAA86648.1|Staphylococcus_aureus_NCTC10442|+|23692..25041|ccrA1|-|cassette 
chromosome recombinase 
A1
Length=449

 Score =  597 bits (2254),  Expect = 4e-172, Method: Compositional matrix adjust.
 Identities = 351/449 (79%), Positives = 401/449 (90%), Gaps = 1/449 (0%)

Query  1    MKRAIGYLRQSTTKQQSLPAQKQAIELLAPKHNIQNIQYISDKQSGRTDNRTGYQQVTER  60
            MK+AIGYLRQSTTKQQSL+AQKQ+IE LA KHNIQ I + SDKQSGRTD+R GYQQ+TE 
Sbjct  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60

Query  61   IQQRQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120
            IQQ QCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF
Sbjct  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120

Query  121  MSLAELESDNIGEQVKNGLREKAKQGKLITTHAPFGYHYQNGTFIINNDESPTVKAVFNY  180
            +SLAELESDNIGEQVKNG++EKAKQGK+ITTHAPFGYHY+NGTF I+   +PTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180

Query  181  YLQGYGYKKIAQYLEDDNKLITRKPYQVRNIIMNPNYCGRVINQYGQYNNMVPPIVSATK  240
            YLQGYGYKKIAQYLE D+K+I RKPYQVRNII+NPNYCGRVINQYGQY+NM P+IVS+T 
Sbjct  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240

Query  241  YEHAQAIRNKKQLHCIPSENQLKQKIKCPCCDSTLTNMTIRKK-HTLRYYICPKNMNESR  299
            YE+AQ  R +K +   PSENQLKQKIKCP CDSTLTNMTIRKK HTLRYY+CP+NMN SR
Sbjct  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300

Query  300  FVCSFKGINAQKLEVQVLATCQNFFQNQQLYSKINNAIHQRLKKQRVIEAKSTLTQEQLI  359
            FVC FKGINAQ LE  VLATCQ+FFQNQQLYSKIN++I+QRLK+QR IE+K+TL +EQLI
Sbjct  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360

Query  360  DKLAKGMIDAESFRKQTHLMNQKHKTISSISDNQLQTSLQKVIQKSFTLNMLHPYIDEIR  419
            +KLA++ IDAE+FR QT+ + Q+ K ISSIS  Q++ ++Q++IQ+ FTLNML PYIDEI 
Sbjct  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420

Query  420  ITKNKALVGIYFKNEPLNIVNQTSQSSIA  448
            I+KNK+L GIYFKNEPLNIV+QT + SI 
Sbjct  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449

16) ccrA in NC_017331


> AB033763|29|G28|6332766|BAA86648.1|Staphylococcus_aureus_NCTC10442|+|23692..25041|ccrA1|-|cassette 
chromosome recombinase 
A1
Length=449

 Score =  597 bits (2254),  Expect = 4e-172, Method: Compositional matrix adjust.
 Identities = 351/449 (79%), Positives = 401/449 (90%), Gaps = 1/449 (0%)

Query  1    MKRAIGYLRQSTTKQQSLPAQKQAIELLAPKHNIQNIQYISDKQSGRTDNRTGYQQVTER  60
            MK+AIGYLRQSTTKQQSL+AQKQ+IE LA KHNIQ I + SDKQSGRTD+R GYQQ+TE 
Sbjct  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60

Query  61   IQQRQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120
            IQQ QCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF
Sbjct  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120

Query  121  MSLAELESDNIGEQVKNGLREKAKQGKLITTHAPFGYHYQNGTFIINNDESPTVKAVFNY  180
            +SLAELESDNIGEQVKNG++EKAKQGK+ITTHAPFGYHY+NGTF I+   +PTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180

Query  181  YLQGYGYKKIAQYLEDDNKLITRKPYQVRNIIMNPNYCGRVINQYGQYNNMVPPIVSATK  240
            YLQGYGYKKIAQYLE D+K+I RKPYQVRNII+NPNYCGRVINQYGQY+NM P+IVS+T 
Sbjct  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240

Query  241  YEHAQAIRNKKQLHCIPSENQLKQKIKCPCCDSTLTNMTIRKK-HTLRYYICPKNMNESR  299
            YE+AQ  R +K +   PSENQLKQKIKCP CDSTLTNMTIRKK HTLRYY+CP+NMN SR
Sbjct  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300

Query  300  FVCSFKGINAQKLEVQVLATCQNFFQNQQLYSKINNAIHQRLKKQRVIEAKSTLTQEQLI  359
            FVC FKGINAQ LE  VLATCQ+FFQNQQLYSKIN++I+QRLK+QR IE+K+TL +EQLI
Sbjct  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360

Query  360  DKLAKGMIDAESFRKQTHLMNQKHKTISSISDNQLQTSLQKVIQKSFTLNMLHPYIDEIR  419
            +KLA++ IDAE+FR QT+ + Q+ K ISSIS  Q++ ++Q++IQ+ FTLNML PYIDEI 
Sbjct  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420

Query  420  ITKNKALVGIYFKNEPLNIVNQTSQSSIA  448
            I+KNK+L GIYFKNEPLNIV+QT + SI 
Sbjct  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449

17) ccrA in NC_002952


> AB033763|29|G28|6332766|BAA86648.1|Staphylococcus_aureus_NCTC10442|+|23692..25041|ccrA1|-|cassette 
chromosome recombinase 
A1
Length=449

 Score =  579 bits (2186),  Expect = 1e-166, Method: Compositional matrix adjust.
 Identities = 339/449 (76%), Positives = 405/449 (91%), Gaps = 0/449 (0%)

Query  1    MKQVIGYLRQSTMKQQSLAAQKQAIEAITEKHHIQHINFYSDKQSGRKDNRSGYRQITQL  60
            MKQ IGYLRQST KQQSLAAQKQ+IEA++ KH+IQ I FYSDKQSGR D+R+GY+QIT+L
Sbjct  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYRVHILSVHDGYFDMDQAFDRFKLNIF  120
            IQQGQCD+LCCYRLNRLHRNLKNALKL+KLCQ Y+VHILSVHDGYFDMD+AFDR+KLNIF
Sbjct  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGTFIINQNESPTVKAVFNY  180
            ISLAELESDNIGEQV+NG++EKAKQG++ITTHAPFGY+YHNGTF I+   +PTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            Y++G GYKKIAQ LE D+ +INR+PYQVRNII+NPNYCGRV NQYGQ++NMFP+IVST+I
Sbjct  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240

Query  241  YEQAQRLRLQKQTKQTPSDNQLKQKIKCPCCNATLTNMTIRKKNHTLRYYVCPKNMNASR  300
            YE+AQ  R QK  K+ PS+NQLKQKIKCP C++TLTNMTIRKK+HTLRYYVCP+NMNASR
Sbjct  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300

Query  301  FVCDFKGINAQTLEDKVLEVCRDFYQNQRIYTKIKSAIDKRIKRQRNIEKHHTLTQKQLI  360
            FVC+FKGINAQ LE  VL  C+DF+QNQ++Y+KI+ +I++R+KRQR+IE   TL + QLI
Sbjct  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHqiqntiqniiqKRFTLNMLYPYIDEIL  420
            EKLAQ+ IDAETFREQTQSLRQQ++  +SI+  QI++++QNIIQ+RFTLNMLYPYIDEI 
Sbjct  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420

Query  421  ITKSKTLMGIYFKNEPLNIVNQTTQSSIA  449
            I+K+K+L GIYFKNEPLNIV+QT + SI 
Sbjct  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449

18) SERP2498 in NC_002976


> AB033763|29|G28|6332766|BAA86648.1|Staphylococcus_aureus_NCTC10442|+|23692..25041|ccrA1|-|cassette 
chromosome recombinase 
A1
Length=449

 Score =  579 bits (2186),  Expect = 1e-166, Method: Compositional matrix adjust.
 Identities = 339/449 (76%), Positives = 405/449 (91%), Gaps = 0/449 (0%)

Query  1    MKQVIGYLRQSTMKQQSLAAQKQAIEAITEKHHIQHINFYSDKQSGRKDNRSGYRQITQL  60
            MKQ IGYLRQST KQQSLAAQKQ+IEA++ KH+IQ I FYSDKQSGR D+R+GY+QIT+L
Sbjct  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYRVHILSVHDGYFDMDQAFDRFKLNIF  120
            IQQGQCD+LCCYRLNRLHRNLKNALKL+KLCQ Y+VHILSVHDGYFDMD+AFDR+KLNIF
Sbjct  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGTFIINQNESPTVKAVFNY  180
            ISLAELESDNIGEQV+NG++EKAKQG++ITTHAPFGY+YHNGTF I+   +PTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            Y++G GYKKIAQ LE D+ +INR+PYQVRNII+NPNYCGRV NQYGQ++NMFP+IVST+I
Sbjct  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240

Query  241  YEQAQRLRLQKQTKQTPSDNQLKQKIKCPCCNATLTNMTIRKKNHTLRYYVCPKNMNASR  300
            YE+AQ  R QK  K+ PS+NQLKQKIKCP C++TLTNMTIRKK+HTLRYYVCP+NMNASR
Sbjct  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300

Query  301  FVCDFKGINAQTLEDKVLEVCRDFYQNQRIYTKIKSAIDKRIKRQRNIEKHHTLTQKQLI  360
            FVC+FKGINAQ LE  VL  C+DF+QNQ++Y+KI+ +I++R+KRQR+IE   TL + QLI
Sbjct  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHqiqntiqniiqKRFTLNMLYPYIDEIL  420
            EKLAQ+ IDAETFREQTQSLRQQ++  +SI+  QI++++QNIIQ+RFTLNMLYPYIDEI 
Sbjct  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420

Query  421  ITKSKTLMGIYFKNEPLNIVNQTTQSSIA  449
            I+K+K+L GIYFKNEPLNIV+QT + SI 
Sbjct  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449

19) ccrA in NC_003923


> AB033763|29|G28|6332766|BAA86648.1|Staphylococcus_aureus_NCTC10442|+|23692..25041|ccrA1|-|cassette 
chromosome recombinase 
A1
Length=449

 Score =  564 bits (2131),  Expect = 2e-162, Method: Compositional matrix adjust.
 Identities = 342/449 (77%), Positives = 405/449 (91%), Gaps = 0/449 (0%)

Query  1    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQITQL  60
            MKQ IGYLRQST KQQSLAAQKQ+IEA+A KH+IQ I FYSDKQSGR D+R+GY+QIT+L
Sbjct  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRLKLNIF  120
            IQQGQCD+LCCYRLNRLHRNLKNALKL+KLCQ YHVHILSVHDGYFDMD+AFDRLKLNIF
Sbjct  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGTFIINQNESPTVKAVFNY  180
            ISLAELESDNIGEQV+NG++EKAKQG++ITTHAPFGY+YHNGTF I+   +PTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            Y++G GYKKIAQ LE D+ +INR+PYQVRNII+NPNYCGRV NQYGQ++NMFP+IVST+I
Sbjct  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240

Query  241  YEQAQRLRLQKQTKQTPSDNQLKQKIKCPCCNATLTNMTIRKKNHTLRYYVCPKNMNASR  300
            YE+AQ  R QK  K+ PS+NQLKQKIKCP C++TLTNMTIRKK+HTLRYYVCP+NMNASR
Sbjct  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300

Query  301  FVCDFKGINAQTLEDKVLEVCRDFYQNQRIYTKIKSAIDKRIKRQRNIEKHHTLTQKQLI  360
            FVC+FKGINAQ LE  VL  C+DF+QNQ++Y+KI+ +I++R+KRQR+IE   TL + QLI
Sbjct  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHqiqntiqniiqKRFTLNMLYPYIDEIL  420
            EKLAQ+ IDAETFREQTQSLRQQ++  +SI+  QI++++QNIIQ+RFTLNMLYPYIDEI 
Sbjct  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420

Query  421  ITKSKTLMGIYFKNEPLNIVNQTTQSSIA  449
            I+K+K+L GIYFKNEPLNIV+QT + SI 
Sbjct  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449

20) MS7_0070 in NC_017351


> AB033763|29|G28|6332766|BAA86648.1|Staphylococcus_aureus_NCTC10442|+|23692..25041|ccrA1|-|cassette 
chromosome recombinase 
A1
Length=449

 Score =  564 bits (2129),  Expect = 3e-162, Method: Compositional matrix adjust.
 Identities = 341/449 (76%), Positives = 405/449 (91%), Gaps = 0/449 (0%)

Query  1    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQITQL  60
            MKQ IGYLRQST KQQSLAAQKQ+IEA+A KH+IQ I FYSDKQSGR D+R+GY+QIT+L
Sbjct  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRLKLNIF  120
            IQQGQCD+LCCYRLNRLHRNLKNALKL+KLCQ YHVHILSVHDGYFDMD+AFDRLKLNIF
Sbjct  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGTFIINQNESPTVKAVFNY  180
            ISLAELESDNIGEQV+NG++EKAKQG++ITTHAPFGY+YHNGTF I+   +PTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            Y++G GYKKIAQ LE D+ +INR+PYQVRNII+NPNYCGRV NQYGQ++NMFP+IVST+I
Sbjct  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240

Query  241  YEQAQRLRLQKQTKQTPSDNQLKQKIKCPCCNATLTNMTIRKKNHTLRYYVCPKNMNASR  300
            YE+AQ  R QK  K+ PS+NQLKQKIKCP C++TLTNMTIRKK+HTLRYYVCP+NMNASR
Sbjct  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300

Query  301  FVCDFKGINAQTLEDKVLEVCRDFYQNQRIYTKIKSAIDKRIKRQRNIEKHHTLTQEQLI  360
            FVC+FKGINAQ LE  VL  C+DF+QNQ++Y+KI+ +I++R+KRQR+IE   TL +EQLI
Sbjct  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSinghqiqhiiqniiqKRFTLNILYPYIETIH  420
            EKLAQ+ IDAETFREQTQSLRQQ++  +SI+  QI+  +QNIIQ+RFTLN+LYPYI+ I+
Sbjct  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420

Query  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449
            I+K+K+L GIYFKNEPLNIV+QTM+ SI 
Sbjct  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449

21) ccrA in NC_017338


> AB033763|29|G28|6332766|BAA86648.1|Staphylococcus_aureus_NCTC10442|+|23692..25041|ccrA1|-|cassette 
chromosome recombinase 
A1
Length=449

 Score =  564 bits (2129),  Expect = 3e-162, Method: Compositional matrix adjust.
 Identities = 341/449 (76%), Positives = 405/449 (91%), Gaps = 0/449 (0%)

Query  1    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQITQL  60
            MKQ IGYLRQST KQQSLAAQKQ+IEA+A KH+IQ I FYSDKQSGR D+R+GY+QIT+L
Sbjct  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRLKLNIF  120
            IQQGQCD+LCCYRLNRLHRNLKNALKL+KLCQ YHVHILSVHDGYFDMD+AFDRLKLNIF
Sbjct  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGTFIINQNESPTVKAVFNY  180
            ISLAELESDNIGEQV+NG++EKAKQG++ITTHAPFGY+YHNGTF I+   +PTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            Y++G GYKKIAQ LE D+ +INR+PYQVRNII+NPNYCGRV NQYGQ++NMFP+IVST+I
Sbjct  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240

Query  241  YEQAQRLRLQKQTKQTPSDNQLKQKIKCPCCNATLTNMTIRKKNHTLRYYVCPKNMNASR  300
            YE+AQ  R QK  K+ PS+NQLKQKIKCP C++TLTNMTIRKK+HTLRYYVCP+NMNASR
Sbjct  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300

Query  301  FVCDFKGINAQTLEDKVLEVCRDFYQNQRIYTKIKSAIDKRIKRQRNIEKHHTLTQEQLI  360
            FVC+FKGINAQ LE  VL  C+DF+QNQ++Y+KI+ +I++R+KRQR+IE   TL +EQLI
Sbjct  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSinghqiqhiiqniiqKRFTLNILYPYIETIH  420
            EKLAQ+ IDAETFREQTQSLRQQ++  +SI+  QI+  +QNIIQ+RFTLN+LYPYI+ I+
Sbjct  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420

Query  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449
            I+K+K+L GIYFKNEPLNIV+QTM+ SI 
Sbjct  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449

22) SAMSHR1132_00410 in NC_016941


> AB033763|29|G28|6332766|BAA86648.1|Staphylococcus_aureus_NCTC10442|+|23692..25041|ccrA1|-|cassette 
chromosome recombinase 
A1
Length=449

 Score =  564 bits (2129),  Expect = 3e-162, Method: Compositional matrix adjust.
 Identities = 341/449 (76%), Positives = 405/449 (91%), Gaps = 0/449 (0%)

Query  1    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQITQL  60
            MKQ IGYLRQST KQQSLAAQKQ+IEA+A KH+IQ I FYSDKQSGR D+R+GY+QIT+L
Sbjct  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRLKLNIF  120
            IQQGQCD+LCCYRLNRLHRNLKNALKL+KLCQ YHVHILSVHDGYFDMD+AFDRLKLNIF
Sbjct  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGTFIINQNESPTVKAVFNY  180
            ISLAELESDNIGEQV+NG++EKAKQG++ITTHAPFGY+YHNGTF I+   +PTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            Y++G GYKKIAQ LE D+ +INR+PYQVRNII+NPNYCGRV NQYGQ++NMFP+IVST+I
Sbjct  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240

Query  241  YEQAQRLRLQKQTKQTPSDNQLKQKIKCPCCNATLTNMTIRKKNHTLRYYVCPKNMNASR  300
            YE+AQ  R QK  K+ PS+NQLKQKIKCP C++TLTNMTIRKK+HTLRYYVCP+NMNASR
Sbjct  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300

Query  301  FVCDFKGINAQTLEDKVLEVCRDFYQNQRIYTKIKSAIDKRIKRQRNIEKHHTLTQEQLI  360
            FVC+FKGINAQ LE  VL  C+DF+QNQ++Y+KI+ +I++R+KRQR+IE   TL +EQLI
Sbjct  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSinghqiqhiiqniiqKRFTLNILYPYIETIH  420
            EKLAQ+ IDAETFREQTQSLRQQ++  +SI+  QI+  +QNIIQ+RFTLN+LYPYI+ I+
Sbjct  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420

Query  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449
            I+K+K+L GIYFKNEPLNIV+QTM+ SI 
Sbjct  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449

23) ccrA in NC_007793


> AB033763|29|G28|6332766|BAA86648.1|Staphylococcus_aureus_NCTC10442|+|23692..25041|ccrA1|-|cassette 
chromosome recombinase 
A1
Length=449

 Score =  564 bits (2129),  Expect = 3e-162, Method: Compositional matrix adjust.
 Identities = 341/449 (76%), Positives = 405/449 (91%), Gaps = 0/449 (0%)

Query  1    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQITQL  60
            MKQ IGYLRQST KQQSLAAQKQ+IEA+A KH+IQ I FYSDKQSGR D+R+GY+QIT+L
Sbjct  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRLKLNIF  120
            IQQGQCD+LCCYRLNRLHRNLKNALKL+KLCQ YHVHILSVHDGYFDMD+AFDRLKLNIF
Sbjct  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGTFIINQNESPTVKAVFNY  180
            ISLAELESDNIGEQV+NG++EKAKQG++ITTHAPFGY+YHNGTF I+   +PTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            Y++G GYKKIAQ LE D+ +INR+PYQVRNII+NPNYCGRV NQYGQ++NMFP+IVST+I
Sbjct  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240

Query  241  YEQAQRLRLQKQTKQTPSDNQLKQKIKCPCCNATLTNMTIRKKNHTLRYYVCPKNMNASR  300
            YE+AQ  R QK  K+ PS+NQLKQKIKCP C++TLTNMTIRKK+HTLRYYVCP+NMNASR
Sbjct  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300

Query  301  FVCDFKGINAQTLEDKVLEVCRDFYQNQRIYTKIKSAIDKRIKRQRNIEKHHTLTQEQLI  360
            FVC+FKGINAQ LE  VL  C+DF+QNQ++Y+KI+ +I++R+KRQR+IE   TL +EQLI
Sbjct  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSinghqiqhiiqniiqKRFTLNILYPYIETIH  420
            EKLAQ+ IDAETFREQTQSLRQQ++  +SI+  QI+  +QNIIQ+RFTLN+LYPYI+ I+
Sbjct  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420

Query  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449
            I+K+K+L GIYFKNEPLNIV+QTM+ SI 
Sbjct  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449

24) ccrA in NC_010079


> AB033763|29|G28|6332766|BAA86648.1|Staphylococcus_aureus_NCTC10442|+|23692..25041|ccrA1|-|cassette 
chromosome recombinase 
A1
Length=449

 Score =  564 bits (2129),  Expect = 3e-162, Method: Compositional matrix adjust.
 Identities = 341/449 (76%), Positives = 405/449 (91%), Gaps = 0/449 (0%)

Query  1    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQITQL  60
            MKQ IGYLRQST KQQSLAAQKQ+IEA+A KH+IQ I FYSDKQSGR D+R+GY+QIT+L
Sbjct  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRLKLNIF  120
            IQQGQCD+LCCYRLNRLHRNLKNALKL+KLCQ YHVHILSVHDGYFDMD+AFDRLKLNIF
Sbjct  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGTFIINQNESPTVKAVFNY  180
            ISLAELESDNIGEQV+NG++EKAKQG++ITTHAPFGY+YHNGTF I+   +PTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            Y++G GYKKIAQ LE D+ +INR+PYQVRNII+NPNYCGRV NQYGQ++NMFP+IVST+I
Sbjct  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240

Query  241  YEQAQRLRLQKQTKQTPSDNQLKQKIKCPCCNATLTNMTIRKKNHTLRYYVCPKNMNASR  300
            YE+AQ  R QK  K+ PS+NQLKQKIKCP C++TLTNMTIRKK+HTLRYYVCP+NMNASR
Sbjct  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300

Query  301  FVCDFKGINAQTLEDKVLEVCRDFYQNQRIYTKIKSAIDKRIKRQRNIEKHHTLTQEQLI  360
            FVC+FKGINAQ LE  VL  C+DF+QNQ++Y+KI+ +I++R+KRQR+IE   TL +EQLI
Sbjct  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSinghqiqhiiqniiqKRFTLNILYPYIETIH  420
            EKLAQ+ IDAETFREQTQSLRQQ++  +SI+  QI+  +QNIIQ+RFTLN+LYPYI+ I+
Sbjct  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420

Query  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449
            I+K+K+L GIYFKNEPLNIV+QTM+ SI 
Sbjct  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449

25) ccrA in NC_017763


> AB033763|29|G28|6332766|BAA86648.1|Staphylococcus_aureus_NCTC10442|+|23692..25041|ccrA1|-|cassette 
chromosome recombinase 
A1
Length=449

 Score =  564 bits (2129),  Expect = 4e-162, Method: Compositional matrix adjust.
 Identities = 339/449 (76%), Positives = 406/449 (91%), Gaps = 0/449 (0%)

Query  1    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQITQL  60
            MKQ IGYLRQST KQQSLAAQKQ+IEA+A KH+IQ I FYSDKQSGR D+R+GY+QIT+L
Sbjct  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRLKLNIF  120
            IQQGQCD+LCCYRLNRLHRNLKNALKL+KLCQ YHVHILSVHDGYFDMD+AFDRLKLNIF
Sbjct  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYDYHHGTFIINQNESPTVKAVFNY  180
            ISLAELESDNIGEQV+NG++EKAKQG++ITTHAPFGY+YH+GTF I+   +PTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            Y++G GYKKIAQ LE D+ +INR+PYQVRNII+NPNYCGRV NQYGQ++NMFP+IVST+I
Sbjct  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240

Query  241  YEQAQRLRSQKQTKQTSSDNQLKQKIKCPCCNATLTNMTIRKKNHTLRYYVCPKNMNASR  300
            YE+AQ  R+QK  K+ +S+NQLKQKIKCP C++TLTNMTIRKK+HTLRYYVCP+NMNASR
Sbjct  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300

Query  301  FVCDFKGINAQTLEDKVLEVCRDFYQNQRIYTKIKSAIDKRIKRQRNIEKHHTLTQEQLI  360
            FVC+FKGINAQ LE  VL  C+DF+QNQ++Y+KI+ +I++R+KRQR+IE   TL +EQLI
Sbjct  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSinghqiqhiiqniiqKRFTLNILYPYIETIH  420
            EKLAQ+ IDAETFREQTQSLRQQ++  +SI+  QI+  +QNIIQ+RFTLN+LYPYI+ I+
Sbjct  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420

Query  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449
            I+K+K+L GIYFKNEPLNIV+QTM+ SI 
Sbjct  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449

26) SAKOR_00048 in NC_022226


> AB033763|29|G28|6332766|BAA86648.1|Staphylococcus_aureus_NCTC10442|+|23692..25041|ccrA1|-|cassette 
chromosome recombinase 
A1
Length=449

 Score =  563 bits (2124),  Expect = 8e-162, Method: Compositional matrix adjust.
 Identities = 336/449 (75%), Positives = 405/449 (91%), Gaps = 0/449 (0%)

Query  7    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQLTQL  66
            MKQ IGYLRQST KQQSLAAQKQ+IEA+A KH+IQ I FYSDKQSGR D+R+GY+Q+T+L
Sbjct  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60

Query  67   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRLKLNIF  126
            IQQGQCD+LCCYRLNRLHRNLKNALKL+KLCQ YHVHILSVHDGYFDMD+AFDRLKLNIF
Sbjct  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120

Query  127  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYDYHNGTFIINQNESPTVKAVFNY  186
            ISLAELESDNIGEQV+NG++EKAKQG++ITTHAPFGY+YHNGTF I+   +PTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180

Query  187  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  246
            Y++G GYKKIAQ LE D+ +INR+PYQVRNII+NPNYCGRV NQYGQ++NMFP+IVST+I
Sbjct  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240

Query  247  YEQAQRLRSQKQTKQTSSDNQLKQKIKCPCCNATLTNMTVRKKNHILRYYVCPKNMNASR  306
            YE+AQ  R+QK  K+ +S+NQLKQKIKCP C++TLTNMT+RKK+H LRYYVCP+NMNASR
Sbjct  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300

Query  307  FVCDFKGINAQTLEDKVLKVCQDFYQDQHIYVKIKNAIDKRIKRQRNIEKHHTLTQEQLI  366
            FVC+FKGINAQ LE  VL  CQDF+Q+Q++Y KI+++I++R+KRQR+IE   TL +EQLI
Sbjct  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360

Query  367  EKLAQGIIDAETFRKQMQSLHQQPQRITSISEhqiqhtiqniiqKRFTLNILYPYIETIH  426
            EKLAQ+ IDAETFR Q QSL+QQ++ I+SIS  QI+ ++QNIIQ+RFTLN+LYPYI+ I+
Sbjct  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420

Query  427  IAKDKNLIGIYFKNEPLNIVNQTMQSSIA  455
            I+K+K+L GIYFKNEPLNIV+QTM+ SI 
Sbjct  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449

27) SE0037 in NC_004461


> AB033763|29|G28|6332766|BAA86648.1|Staphylococcus_aureus_NCTC10442|+|23692..25041|ccrA1|-|cassette 
chromosome recombinase 
A1
Length=449

 Score =  562 bits (2120),  Expect = 2e-161, Method: Compositional matrix adjust.
 Identities = 337/449 (76%), Positives = 406/449 (91%), Gaps = 0/449 (0%)

Query  1    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQVTQL  60
            MKQ IGYLRQST KQQSLAAQKQ+IEA+A KH+IQ I FYSDKQSGR D+R+GY+Q+T+L
Sbjct  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRLKLNIF  120
            IQQGQCD+LCCYRLNRLHRNLKNALKL+KLCQ YHVHILSVHDGYFDMD+AFDRLKLNIF
Sbjct  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYDYHNGTFIINQNESPTVKAVFNY  180
            ISLAELESDNIGEQV+NG++EKAKQG++ITTHAPFGY+YHNGTF I+   +PTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            Y++G GYKKIAQ LE D+ +INR+PYQVRNII+NPNYCGRV NQYGQ++NMFP+IVST+I
Sbjct  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240

Query  241  YEQAQRLRSQKQTKQTSSDNQLKQKIKCPCCNATLTNMTIRKKNHTLRYYVCPKNMNASR  300
            YE+AQ  R+QK  K+ +S+NQLKQKIKCP C++TLTNMTIRKK+HTLRYYVCP+NMNASR
Sbjct  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300

Query  301  FVCDFKGINAQTLEDKVLEVCRDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHILTQEQLI  360
            FVC+FKGINAQ LE  VL  C+DF+QNQ++Y+KI+ +I++R+KRQR+IE    L +EQLI
Sbjct  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSinghqiqhtiqniiqKRFTLNILYPYIETIH  420
            EKLAQ+ IDAETFREQTQSLRQQ++  +SI+  QI+ ++QNIIQ+RFTLN+LYPYI+ I+
Sbjct  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420

Query  421  ITKDKNLIGIYFKNEPLNIVNQAMQSSIA  449
            I+K+K+L GIYFKNEPLNIV+Q+M+ SI 
Sbjct  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449

28) ccrA in NC_017340


> AB033763|29|G28|6332766|BAA86648.1|Staphylococcus_aureus_NCTC10442|+|23692..25041|ccrA1|-|cassette 
chromosome recombinase 
A1
Length=449

 Score =  560 bits (2114),  Expect = 5e-161, Method: Compositional matrix adjust.
 Identities = 336/449 (75%), Positives = 408/449 (91%), Gaps = 0/449 (0%)

Query  1    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60
            MKQ IGYLRQST KQQSLAAQKQ+IEA+A KH+IQ I FYSDKQSGR D+R+GY+Q+T+L
Sbjct  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120
            IQQGQCD+LCCYRLNRLHRNLKNALKL+KLCQ YHVHILSVHDGYFDMD+AFDR+KLNIF
Sbjct  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180
            ISLAELESDNIGEQV+NG++EKAKQG++ITTHAPFGY+YHNG+F I+   +PTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            Y++G GYKKIAQ LE D+ +INR+PYQVRNII+NPNYCGRV NQYGQ++NMFP+IVST+I
Sbjct  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240

Query  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300
            YE+AQ  R+QK +K+ +S+NQLKQKIKCP C++TLTNMT+RKK+HTLRYYVCP+NMNASR
Sbjct  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300

Query  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360
            FVC+FKGINAQ LE  VL  C+DF+QNQ++Y+KI+ +I++R+KRQR+IE   TL +EQLI
Sbjct  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSinghqiqhtiqniiqKRFTLNILYPYIETIH  420
            EKLAQ+ IDAETFREQTQSLRQQ++  +SI+  QI+ ++QNIIQ+RFTLN+LYPYI+ I+
Sbjct  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420

Query  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449
            I+K+K+L GIYFKNEPLNIV+QTM+ SI 
Sbjct  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449

29) CA347_59 in NC_021554


> AB033763|29|G28|6332766|BAA86648.1|Staphylococcus_aureus_NCTC10442|+|23692..25041|ccrA1|-|cassette 
chromosome recombinase 
A1
Length=449

 Score =  560 bits (2114),  Expect = 5e-161, Method: Compositional matrix adjust.
 Identities = 336/449 (75%), Positives = 408/449 (91%), Gaps = 0/449 (0%)

Query  1    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60
            MKQ IGYLRQST KQQSLAAQKQ+IEA+A KH+IQ I FYSDKQSGR D+R+GY+Q+T+L
Sbjct  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120
            IQQGQCD+LCCYRLNRLHRNLKNALKL+KLCQ YHVHILSVHDGYFDMD+AFDR+KLNIF
Sbjct  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180
            ISLAELESDNIGEQV+NG++EKAKQG++ITTHAPFGY+YHNG+F I+   +PTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            Y++G GYKKIAQ LE D+ +INR+PYQVRNII+NPNYCGRV NQYGQ++NMFP+IVST+I
Sbjct  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240

Query  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300
            YE+AQ  R+QK +K+ +S+NQLKQKIKCP C++TLTNMT+RKK+HTLRYYVCP+NMNASR
Sbjct  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300

Query  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360
            FVC+FKGINAQ LE  VL  C+DF+QNQ++Y+KI+ +I++R+KRQR+IE   TL +EQLI
Sbjct  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSinghqiqhtiqniiqKRFTLNILYPYIETIH  420
            EKLAQ+ IDAETFREQTQSLRQQ++  +SI+  QI+ ++QNIIQ+RFTLN+LYPYI+ I+
Sbjct  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420

Query  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449
            I+K+K+L GIYFKNEPLNIV+QTM+ SI 
Sbjct  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449

30) SaurJH1_0050 in NC_009632


> AB033763|29|G28|6332766|BAA86648.1|Staphylococcus_aureus_NCTC10442|+|23692..25041|ccrA1|-|cassette 
chromosome recombinase 
A1
Length=449

 Score =  560 bits (2114),  Expect = 5e-161, Method: Compositional matrix adjust.
 Identities = 336/449 (75%), Positives = 408/449 (91%), Gaps = 0/449 (0%)

Query  1    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60
            MKQ IGYLRQST KQQSLAAQKQ+IEA+A KH+IQ I FYSDKQSGR D+R+GY+Q+T+L
Sbjct  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120
            IQQGQCD+LCCYRLNRLHRNLKNALKL+KLCQ YHVHILSVHDGYFDMD+AFDR+KLNIF
Sbjct  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180
            ISLAELESDNIGEQV+NG++EKAKQG++ITTHAPFGY+YHNG+F I+   +PTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            Y++G GYKKIAQ LE D+ +INR+PYQVRNII+NPNYCGRV NQYGQ++NMFP+IVST+I
Sbjct  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240

Query  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300
            YE+AQ  R+QK +K+ +S+NQLKQKIKCP C++TLTNMT+RKK+HTLRYYVCP+NMNASR
Sbjct  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300

Query  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360
            FVC+FKGINAQ LE  VL  C+DF+QNQ++Y+KI+ +I++R+KRQR+IE   TL +EQLI
Sbjct  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSinghqiqhtiqniiqKRFTLNILYPYIETIH  420
            EKLAQ+ IDAETFREQTQSLRQQ++  +SI+  QI+ ++QNIIQ+RFTLN+LYPYI+ I+
Sbjct  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420

Query  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449
            I+K+K+L GIYFKNEPLNIV+QTM+ SI 
Sbjct  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449

31) SaurJH9_0049 in NC_009487


> AB033763|29|G28|6332766|BAA86648.1|Staphylococcus_aureus_NCTC10442|+|23692..25041|ccrA1|-|cassette 
chromosome recombinase 
A1
Length=449

 Score =  560 bits (2114),  Expect = 5e-161, Method: Compositional matrix adjust.
 Identities = 336/449 (75%), Positives = 408/449 (91%), Gaps = 0/449 (0%)

Query  1    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60
            MKQ IGYLRQST KQQSLAAQKQ+IEA+A KH+IQ I FYSDKQSGR D+R+GY+Q+T+L
Sbjct  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120
            IQQGQCD+LCCYRLNRLHRNLKNALKL+KLCQ YHVHILSVHDGYFDMD+AFDR+KLNIF
Sbjct  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180
            ISLAELESDNIGEQV+NG++EKAKQG++ITTHAPFGY+YHNG+F I+   +PTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            Y++G GYKKIAQ LE D+ +INR+PYQVRNII+NPNYCGRV NQYGQ++NMFP+IVST+I
Sbjct  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240

Query  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300
            YE+AQ  R+QK +K+ +S+NQLKQKIKCP C++TLTNMT+RKK+HTLRYYVCP+NMNASR
Sbjct  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300

Query  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360
            FVC+FKGINAQ LE  VL  C+DF+QNQ++Y+KI+ +I++R+KRQR+IE   TL +EQLI
Sbjct  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSinghqiqhtiqniiqKRFTLNILYPYIETIH  420
            EKLAQ+ IDAETFREQTQSLRQQ++  +SI+  QI+ ++QNIIQ+RFTLN+LYPYI+ I+
Sbjct  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420

Query  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449
            I+K+K+L GIYFKNEPLNIV+QTM+ SI 
Sbjct  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449

32) ccrA in NC_009782


> AB033763|29|G28|6332766|BAA86648.1|Staphylococcus_aureus_NCTC10442|+|23692..25041|ccrA1|-|cassette 
chromosome recombinase 
A1
Length=449

 Score =  560 bits (2114),  Expect = 5e-161, Method: Compositional matrix adjust.
 Identities = 336/449 (75%), Positives = 408/449 (91%), Gaps = 0/449 (0%)

Query  1    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60
            MKQ IGYLRQST KQQSLAAQKQ+IEA+A KH+IQ I FYSDKQSGR D+R+GY+Q+T+L
Sbjct  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120
            IQQGQCD+LCCYRLNRLHRNLKNALKL+KLCQ YHVHILSVHDGYFDMD+AFDR+KLNIF
Sbjct  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180
            ISLAELESDNIGEQV+NG++EKAKQG++ITTHAPFGY+YHNG+F I+   +PTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            Y++G GYKKIAQ LE D+ +INR+PYQVRNII+NPNYCGRV NQYGQ++NMFP+IVST+I
Sbjct  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240

Query  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300
            YE+AQ  R+QK +K+ +S+NQLKQKIKCP C++TLTNMT+RKK+HTLRYYVCP+NMNASR
Sbjct  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300

Query  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360
            FVC+FKGINAQ LE  VL  C+DF+QNQ++Y+KI+ +I++R+KRQR+IE   TL +EQLI
Sbjct  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSinghqiqhtiqniiqKRFTLNILYPYIETIH  420
            EKLAQ+ IDAETFREQTQSLRQQ++  +SI+  QI+ ++QNIIQ+RFTLN+LYPYI+ I+
Sbjct  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420

Query  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449
            I+K+K+L GIYFKNEPLNIV+QTM+ SI 
Sbjct  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449

33) ccrA in NC_002758


> AB033763|29|G28|6332766|BAA86648.1|Staphylococcus_aureus_NCTC10442|+|23692..25041|ccrA1|-|cassette 
chromosome recombinase 
A1
Length=449

 Score =  560 bits (2114),  Expect = 5e-161, Method: Compositional matrix adjust.
 Identities = 336/449 (75%), Positives = 408/449 (91%), Gaps = 0/449 (0%)

Query  1    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60
            MKQ IGYLRQST KQQSLAAQKQ+IEA+A KH+IQ I FYSDKQSGR D+R+GY+Q+T+L
Sbjct  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120
            IQQGQCD+LCCYRLNRLHRNLKNALKL+KLCQ YHVHILSVHDGYFDMD+AFDR+KLNIF
Sbjct  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180
            ISLAELESDNIGEQV+NG++EKAKQG++ITTHAPFGY+YHNG+F I+   +PTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            Y++G GYKKIAQ LE D+ +INR+PYQVRNII+NPNYCGRV NQYGQ++NMFP+IVST+I
Sbjct  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240

Query  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300
            YE+AQ  R+QK +K+ +S+NQLKQKIKCP C++TLTNMT+RKK+HTLRYYVCP+NMNASR
Sbjct  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300

Query  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360
            FVC+FKGINAQ LE  VL  C+DF+QNQ++Y+KI+ +I++R+KRQR+IE   TL +EQLI
Sbjct  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSinghqiqhtiqniiqKRFTLNILYPYIETIH  420
            EKLAQ+ IDAETFREQTQSLRQQ++  +SI+  QI+ ++QNIIQ+RFTLN+LYPYI+ I+
Sbjct  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420

Query  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449
            I+K+K+L GIYFKNEPLNIV+QTM+ SI 
Sbjct  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449

34) ccrA in NC_002745


> AB033763|29|G28|6332766|BAA86648.1|Staphylococcus_aureus_NCTC10442|+|23692..25041|ccrA1|-|cassette 
chromosome recombinase 
A1
Length=449

 Score =  560 bits (2114),  Expect = 5e-161, Method: Compositional matrix adjust.
 Identities = 336/449 (75%), Positives = 408/449 (91%), Gaps = 0/449 (0%)

Query  1    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60
            MKQ IGYLRQST KQQSLAAQKQ+IEA+A KH+IQ I FYSDKQSGR D+R+GY+Q+T+L
Sbjct  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120
            IQQGQCD+LCCYRLNRLHRNLKNALKL+KLCQ YHVHILSVHDGYFDMD+AFDR+KLNIF
Sbjct  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180
            ISLAELESDNIGEQV+NG++EKAKQG++ITTHAPFGY+YHNG+F I+   +PTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            Y++G GYKKIAQ LE D+ +INR+PYQVRNII+NPNYCGRV NQYGQ++NMFP+IVST+I
Sbjct  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240

Query  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300
            YE+AQ  R+QK +K+ +S+NQLKQKIKCP C++TLTNMT+RKK+HTLRYYVCP+NMNASR
Sbjct  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300

Query  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360
            FVC+FKGINAQ LE  VL  C+DF+QNQ++Y+KI+ +I++R+KRQR+IE   TL +EQLI
Sbjct  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSinghqiqhtiqniiqKRFTLNILYPYIETIH  420
            EKLAQ+ IDAETFREQTQSLRQQ++  +SI+  QI+ ++QNIIQ+RFTLN+LYPYI+ I+
Sbjct  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420

Query  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449
            I+K+K+L GIYFKNEPLNIV+QTM+ SI 
Sbjct  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449

35) ccrA in NC_017342


> AB033763|29|G28|6332766|BAA86648.1|Staphylococcus_aureus_NCTC10442|+|23692..25041|ccrA1|-|cassette 
chromosome recombinase 
A1
Length=449

 Score =  559 bits (2110),  Expect = 1e-160, Method: Compositional matrix adjust.
 Identities = 337/449 (76%), Positives = 405/449 (91%), Gaps = 0/449 (0%)

Query  7    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQMTQL  66
            MKQ IGYLRQST KQQSLAAQKQ+IEA+A KH+IQ I FYSDKQSGR D+R+GY+Q+T+L
Sbjct  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60

Query  67   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYRVHILSVHDGYFDMDQAFDRLKLNIF  126
            IQQGQCD+LCCYRLNRLHRNLKNALKL+KLCQ Y+VHILSVHDGYFDMD+AFDRLKLNIF
Sbjct  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120

Query  127  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYDYHNGTFIINQNESPTVKAVFNY  186
            ISLAELESDNIGEQV+NG++EKAKQG++ITTHAPFGY+YHNGTF I+   +PTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180

Query  187  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  246
            Y++G GYKKIAQ LE D+ +INR+PYQVRNII+NPNYCGRV NQYGQ++NMFP+IVST+I
Sbjct  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240

Query  247  YEQAQRLRLQKQTKQTPSDNQLKQKIKCPCCNATLTNMTIRKKNHTLRYYVCPKNMNASR  306
            YE+AQ  R QK  K+ PS+NQLKQKIKCP C++TLTNMTIRKK+HTLRYYVCP+NMNASR
Sbjct  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300

Query  307  FVCDFKGINAQTLEDKVLEVCRDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHILTQEQLI  366
            FVC+FKGINAQ LE  VL  C+DF+QNQ++Y+KI+ +I++R+KRQR+IE    L +EQLI
Sbjct  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360

Query  367  EKLAQGIIDAETFREQTQSLRQQPQRTTSinghqiqhtiqniiqKRFTLNILYPYIETIH  426
            EKLAQ+ IDAETFREQTQSLRQQ++  +SI+  QI+ ++QNIIQ+RFTLN+LYPYI+ I+
Sbjct  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420

Query  427  ITKDKNLIGIYFKNEPLNIVNQAMQSSIA  455
            I+K+K+L GIYFKNEPLNIV+Q+M+ SI 
Sbjct  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449

36) BN843_710 in NC_021059


> AB033763|29|G28|6332766|BAA86648.1|Staphylococcus_aureus_NCTC10442|+|23692..25041|ccrA1|-|cassette 
chromosome recombinase 
A1
Length=449

 Score =  557 bits (2103),  Expect = 4e-160, Method: Compositional matrix adjust.
 Identities = 336/449 (75%), Positives = 405/449 (91%), Gaps = 0/449 (0%)

Query  1    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60
            MKQ IGYLRQST KQQSLAAQKQ+IEA+A KH+IQ I FYSDKQSGR D+R+GY+Q+T+L
Sbjct  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYRVHILSVHDGYFDMDQAFDRLKLNIF  120
            IQQGQCD+LCCYRLNRLHRNLKNALKL+KLCQ Y+VHILSVHDGYFDMD+AFDRLKLNIF
Sbjct  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYDYHNGTFIINQNESPTVKAVFNY  180
            ISLAELESDNIGEQV+NG++EKAKQG++ITTHAPFGY+YHNGTF I+   +PTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            Y++G GYKKIAQ LE D+ +INR+PYQVRNII+NPNYCGRV NQYGQ++NMFP+IVST+I
Sbjct  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240

Query  241  YEQAQRLRLQKQTKQTSSDNQLKQKIKCPCCNATLTNMTIRKKNHTLRYYVCPKNMNASR  300
            YE+AQ  R QK  K+ +S+NQLKQKIKCP C++TLTNMTIRKK+HTLRYYVCP+NMNASR
Sbjct  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300

Query  301  FVCDFKGINAQTLEDKVLEVCRDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHILTQEQLI  360
            FVC+FKGINAQ LE  VL  C+DF+QNQ++Y+KI+ +I++R+KRQR+IE    L +EQLI
Sbjct  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSinghqiqhtiqniiqKRFTLNILYPYIETIH  420
            EKLAQ+ IDAETFREQTQSLRQQ++  +SI+  QI+ ++QNIIQ+RFTLN+LYPYI+ I+
Sbjct  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420

Query  421  ITKDKNLIGIYFKNEPLNIVNQAMQSSIA  449
            I+K+K+L GIYFKNEPLNIV+Q+M+ SI 
Sbjct  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449

37) ccrA in NC_022443


> AB033763|29|G28|6332766|BAA86648.1|Staphylococcus_aureus_NCTC10442|+|23692..25041|ccrA1|-|cassette 
chromosome recombinase 
A1
Length=449

 Score =  556 bits (2099),  Expect = 8e-160, Method: Compositional matrix adjust.
 Identities = 335/449 (75%), Positives = 405/449 (91%), Gaps = 0/449 (0%)

Query  1    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQVTQL  60
            MKQ IGYLRQST KQQSLAAQKQ+IEA+A KH+IQ I FYSDKQSGR D+R+GY+Q+T+L
Sbjct  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120
            IQQGQCD+LCCYRLNRLHRNLKNALKL+KLCQ YHVHILSVHDGYFDMD+AFDR+KLNIF
Sbjct  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYDYHNGTFIINQNESPTVKAVFNY  180
            ISLAELESDNIGEQV+NG++EKAKQG++ITTHAPFGY+YHNGTF I+   +PTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            Y++G GYKKIAQ LE D+ +INR+PYQVRNII+NPNYCGRV NQYGQ++NMFP+IVST+I
Sbjct  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240

Query  241  YEQAQRLRLQKQTKQTSSDNQLKQKIKCPCCNATLTNMTVRKKNHILRYYVCPKNMNASR  300
            YE+AQ  R QK  K+ +S+NQLKQKIKCP C++TLTNMT+RKK+H LRYYVCP+NMNASR
Sbjct  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300

Query  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360
            FVC+FKGINAQ LE  VL  C+DF+QNQ++Y+KI+ +I++R+KRQR+IE   TL +EQLI
Sbjct  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLHQQPQRTTSinghqiqhtiqniiqKRFTLNILYPYIETIH  420
            EKLAQ+ IDAETFREQTQSL+QQ++  +SI+  QI+ ++QNIIQ+RFTLN+LYPYI+ I+
Sbjct  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420

Query  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449
            I+K+K+L GIYFKNEPLNIV+QTM+ SI 
Sbjct  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449

38) BN843_350 in NC_021059


> AB033763|29|G28|6332766|BAA86648.1|Staphylococcus_aureus_NCTC10442|+|23692..25041|ccrA1|-|cassette 
chromosome recombinase 
A1
Length=449

 Score =  412 bits (1551),  Expect = 2e-116, Method: Compositional matrix adjust.
 Identities = 242/443 (55%), Positives = 346/443 (79%), Gaps = 1/443 (0%)

Query  1    MEEAIAYVRQSTLKQQSLATQKSLIMDTAKQYGWSNVAFYDDKKTGRHTKRSGYQKMVEI  60
            M +AI+Y+RQST KQQSLA+QK  I   AK+     ++FY DK++GR  KR+GYQ++ E+
Sbjct  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60

Query  61   ITSGKCKVLCCYRLNRLHRNLKNAIQFFEICKKHHITIISVNDGYFDLSKEFDCFRLNIL  120
            I  G+C VLCCYRLNRLHRNLKNA+++  +C+K H+ I+SV+DGYFD+ K FD ++LNI+
Sbjct  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120

Query  121  MSLAEMESNNISEQTKNGIREKAKQGKLITTHAPFGYRYRKGCFVVQEEEAYTVKSVYRW  180
            +SLAE+ES+NI+EQ KNGI+EKAKQGK+ITTHAPFGY+Y++G F ++   A TVK+V+  
Sbjct  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180

Query  181  YLQGLGYKKISQHLDSNPNLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIIDIDT  240
            YLQG GYKKI+Q L+++ ++I RKPYQVRNI+LNPNYCGRVIN+YG ++++ P+I+    
Sbjct  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240

Query  241  FEEAQERRIHKQlnrsnsrnklkrrIKCPYCQSTLTNLTIKKENYSLRYYVCPKNMNDAY  300
            +EEAQ  R +K ++R  S N+LK++IKCPYC+STLTN+TI+K + +LRYYVCP+NMN + 
Sbjct  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300

Query  301  RTCPFKSINAPELESEVLDTCKKYFEEQSFHKRLNNTILKVLKQQQMKHKETHLTQEQLI  360
              C FK+INA ELE+ VL TC+ +F++Q +  ++N+TI + LK+Q+  +  T L +EQLI
Sbjct  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360

Query  361  EKLAQNRIDVKTFKRLSASCKSEEN-YSTYSTYQIDDKLKYVIKNKITLQDIAPFIDCIK  419
            EKLAQ++ID  TF+  + S + + +  S+ STYQI   ++ +I++++TL+ + P+ID I+
Sbjct  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420

Query  420  ITQTKQLQGIYFKNSPLNIVEQS  442
            I++ K L GIYFKN PLNIV Q+
Sbjct  421  ISKNKSLAGIYFKNEPLNIVKQT  443

39) SE0057 in NC_004461


> AB033763|29|G28|6332766|BAA86648.1|Staphylococcus_aureus_NCTC10442|+|23692..25041|ccrA1|-|cassette 
chromosome recombinase 
A1
Length=449

 Score =  412 bits (1551),  Expect = 2e-116, Method: Compositional matrix adjust.
 Identities = 242/443 (55%), Positives = 346/443 (79%), Gaps = 1/443 (0%)

Query  1    MEEAIAYVRQSTLKQQSLATQKSLIMDTAKQYGWSNVAFYDDKKTGRHTKRSGYQKMVEI  60
            M +AI+Y+RQST KQQSLA+QK  I   AK+     ++FY DK++GR  KR+GYQ++ E+
Sbjct  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60

Query  61   ITSGKCKVLCCYRLNRLHRNLKNAIQFFEICKKHHITIISVNDGYFDLSKEFDCFRLNIL  120
            I  G+C VLCCYRLNRLHRNLKNA+++  +C+K H+ I+SV+DGYFD+ K FD ++LNI+
Sbjct  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120

Query  121  MSLAEMESNNISEQTKNGIREKAKQGKLITTHAPFGYRYRKGCFVVQEEEAYTVKSVYRW  180
            +SLAE+ES+NI+EQ KNGI+EKAKQGK+ITTHAPFGY+Y++G F ++   A TVK+V+  
Sbjct  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180

Query  181  YLQGLGYKKISQHLDSNPNLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIIDIDT  240
            YLQG GYKKI+Q L+++ ++I RKPYQVRNI+LNPNYCGRVIN+YG ++++ P+I+    
Sbjct  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240

Query  241  FEEAQERRIHKQlnrsnsrnklkrrIKCPYCQSTLTNLTIKKENYSLRYYVCPKNMNDAY  300
            +EEAQ  R +K ++R  S N+LK++IKCPYC+STLTN+TI+K + +LRYYVCP+NMN + 
Sbjct  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300

Query  301  RTCPFKSINAPELESEVLDTCKKYFEEQSFHKRLNNTILKVLKQQQMKHKETHLTQEQLI  360
              C FK+INA ELE+ VL TC+ +F++Q +  ++N+TI + LK+Q+  +  T L +EQLI
Sbjct  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360

Query  361  EKLAQNRIDVKTFKRLSASCKSEEN-YSTYSTYQIDDKLKYVIKNKITLQDIAPFIDCIK  419
            EKLAQ++ID  TF+  + S + + +  S+ STYQI   ++ +I++++TL+ + P+ID I+
Sbjct  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420

Query  420  ITQTKQLQGIYFKNSPLNIVEQS  442
            I++ K L GIYFKN PLNIV Q+
Sbjct  421  ISKNKSLAGIYFKNEPLNIVKQT  443