Homolog Viewer

PAthogenisity Island DataBase (PAI DB)

Home PAIs REIs Genomes Search Links

Homologs of topB gene of NC_017333_R1

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) topB
( YP_005732865.1 )

DNA topoisomerase III

NC_017333
(Staphylococcus aureus ST398)

3e-70

100

2) topB_1
( YP_008390799.1 )

DNA topoisomerase 3

NC_021987
(Enterococcus faecium AUS0085)

8e-29

• Sequence Alignments

1) topB in NC_017333


> NC_017333_R1|28|G28|387601344|YP_005732865.1|Staphylococcus_aureus_subsp._aureus_ST398|+|26945..27472|topB|SAPIG0055|DNA 
topoisomerase III
Length=175

 Score =  257 bits (961),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 175/175 (100%), Positives = 175/175 (100%), Gaps = 0/175 (0%)

Query  1    MSYDKREQFNFIKQLFNDSSIRTIVNGCDSDREGSNIFYSSYYMTGAKNKEIKRLWINSL  60
            MSYDKREQFNFIKQLFNDSSIRTIVNGCDSDREGSNIFYSSYYMTGAKNKEIKRLWINSL
Sbjct  1    MSYDKREQFNFIKQLFNDSSIRTIVNGCDSDREGSNIFYSSYYMTGAKNKEIKRLWINSL  60

Query  61   EVDEIRKGFnnlqdnkkdlllYYEAKTRQISDWLVGMNGSRLFTLLLQQKGFNDSLSIGR  120
            EVDEIRKGFNNLQDNKKDLLLYYEAKTRQISDWLVGMNGSRLFTLLLQQKGFNDSLSIGR
Sbjct  61   EVDEIRKGFNNLQDNKKDLLLYYEAKTRQISDWLVGMNGSRLFTLLLQQKGFNDSLSIGR  120

Query  121  VQSSTVYLIYQRQKEIEQFVSTPFYEIEGSFTAKNGMYKGKAKIKSETLKLQLML  175
            VQSSTVYLIYQRQKEIEQFVSTPFYEIEGSFTAKNGMYKGKAKIKSETLKLQLML
Sbjct  121  VQSSTVYLIYQRQKEIEQFVSTPFYEIEGSFTAKNGMYKGKAKIKSETLKLQLML  175

2) topB_1 in NC_021987


> NC_017333_R1|28|G28|387601344|YP_005732865.1|Staphylococcus_aureus_subsp._aureus_ST398|+|26945..27472|topB|SAPIG0055|DNA 
topoisomerase III
Length=175

 Score =  120 bits (438),  Expect = 8e-29, Method: Compositional matrix adjust.
 Identities = 77/148 (53%), Positives = 111/148 (75%), Gaps = 4/148 (2%)

Query  54   DKGKQFKIVAELLKKAN--TIIVATDSDREGENIAWSIIHNANAFSKDKTFKRLWINSLE  111
            DK  QF+++ +L++ ++  TI+ + DSDREG NI  S    + A  K+K +KRLWINSLE
Sbjct  4    DKREQFNFIKQLFNDSSIRTIVNGCDSDREGSNIFYSSYYMTGA--KNKEIKRLWINSLE  61

Query  112  KDVIRSGFQNLQPGMNYYPFYQEAQTRQIADWLIGMNASPLYTLNLQQKGVQGTFSLGRV  171
             D IR GF+NLQ   +   +Y EA+TRQI+DWL+GMN+S L+TL LQQKG ++++S+GRV
Sbjct  62   VDEIRKGFNNLQDNKKDLLLYYEAKTRQISDWLVGMNGSRLFTLLLQQKGFNDSLSIGRV  121

Query  172  QTPTLYLIFQRQEAIENFKKEPFFEVEA  199
            Q++T+YLI+QRQ  IE+F   PF+E+E+
Sbjct  122  QSSTVYLIYQRQKEIEQFVSTPFYEIEG  149