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Homologs of SF2991 gene of NC_004337_P1

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) flu
( YP_005728617.1 )

Outer membrane fluffing protein

NC_017328
(Shigella flexneri 2002017)

0.0

100

2) SF2991
( NP_708765.1 )

outer membrane fluffing protein

NC_004337
(Shigella flexneri 301)

0.0

100

3) ECP_0332
( YP_668265.1 )

autotransporter

NC_008253
(Escherichia coli 536)

0.0

4) c3655
( NP_755530.1 )

antigen 43

NC_004431
(Escherichia coli CFT073)

0.0

5) i14_3351
( YP_006155430.1 )

antigen 43 precursor

NC_017652
(Escherichia coli clone D i14)

0.0

6) i02_3351
( YP_006150511.1 )

antigen 43 precursor

NC_017651
(Escherichia coli clone D i2)

0.0

7) ECABU_c33230
( YP_006107322.1 )

putative antigen 43

NC_017631
(Escherichia coli ABU 83972)

0.0

8) flu
( YP_002400911.1 )

antigen 43 (Ag43) phase-variable biofilm formation autotransporter; CP4-44 prophage

NC_011745
(Escherichia coli ED1a)

0.0

9) flu2
( YP_006098789.1 )

antigen 43 autotransporter (fluffing protein) [contains: antigen 4 alpha chain; antigen 43 beta chain]

NC_017626
(Escherichia coli 042)

0.0

10) flu
( YP_002404320.1 )

antigen 43 (Ag43) phase-variable biofilm formation autotransporter; CP4-44 prophage

NC_011748
(Escherichia coli 55989)

0.0

11) O3M_04255
( YP_006768530.1 )

antigen 43 (Ag43) phase-variable biofilm formation autotransporter, CP4-44 prophage

NC_018650
(Escherichia coli 2009EL-2050)

0.0

12) O3O_21435
( YP_006782637.1 )

antigen 43 (Ag43) phase-variable biofilm formation autotransporter

NC_018661
(Escherichia coli 2009EL-2071)

0.0

13) O3K_04220
( YP_006777574.1 )

antigen 43 (Ag43) phase-variable biofilm formation autotransporter, CP4-44 prophage

NC_018658
(Escherichia coli 2011C-3493)

0.0

14) flu
( YP_002414067.1 )

antigen 43 (Ag43) phase-variable biofilm formation autotransporter; CP4-44 prophage

NC_011751
(Escherichia coli UMN026)

0.0

15) ECABU_c12300
( YP_006105327.1 )

putative antigen 43

NC_017631
(Escherichia coli ABU 83972)

0.0

16) c1273
( NP_753187.1 )

antigen 43

NC_004431
(Escherichia coli CFT073)

0.0

17) i14_1166
( YP_006153291.1 )

antigen 43 precursor

NC_017652
(Escherichia coli clone D i14)

0.0

18) i02_1166
( YP_006148372.1 )

antigen 43 precursor

NC_017651
(Escherichia coli clone D i2)

0.0

19) flu1
( YP_006096552.1 )

antigen 43 precursor (fluffing protein) (autotransporter)

NC_017626
(Escherichia coli 042)

0.0

20) flu
( YP_006129336.1 )

CP4-44 prophage; antigen 43 (Ag43)phase-variable biofilm formation autotransporter

NC_017638
(Escherichia coli DH1)

0.0

21) EcDH1_1657
( YP_006091610.1 )

outer membrane autotransporter barrel domain-containing protein

NC_017625
(Escherichia coli DH1)

0.0

22) flu
( YP_001730949.1 )

CP4-44 prophage; antigen 43 (Ag43) phase-variable biofilm formation autotransporter

NC_010473
(Escherichia coli K-12)

0.0

23) flu
( YP_002926987.1 )

CP4-44 prophage; antigen 43 (Ag43) phase-variable biofilm formation autotransporter

NC_012759
(Escherichia coli K-12)

0.0

24) flu
( YP_490241.1 )

antigen 43 (Ag43) phase-variable biofilm formation autotransporter

NC_007779
(Escherichia coli K-12)

0.0

25) flu
( YP_026164.1 )

CP4-44 prophage; antigen 43 (Ag43) phase-variable biofilm formation autotransporter

NC_000913
(Escherichia coli K12)

0.0

26) ECO26_2901
( YP_003229866.1 )

AidA-I adhesin

NC_013361
(Escherichia coli 11368)

0.0

27) ECO26_5486
( YP_003232352.1 )

adhesin

NC_013361
(Escherichia coli 11368)

0.0

28) flu
( YP_002415461.1 )

antigen 43 (Ag43) phase-variable biofilm formation autotransporter; CP4-44 prophage

NC_011751
(Escherichia coli UMN026)

0.0

29) ECNA114_4551
( YP_006141674.1 )

Putative antigen 43 precursor

NC_017644
(Escherichia coli NA114)

0.0

30) Dd586_2894
( YP_003334434.1 )

outer membrane autotransporter barrel domain-containing protein

NC_013592
(Dickeya dadantii Ech586)

0.0

31) flu1
( YP_001744298.1 )

antigen 43

NC_010498
(Escherichia coli SMS-3-5)

0.0

32) P12B_c3169
( YP_006170169.1 )

Antigen 43 precusor

NC_017663
(Escherichia coli P12b)

0.0

33) flu
( YP_006100332.1 )

antigen 43

NC_017628
(Escherichia coli IHE3034)

0.0

34) UM146_12220
( YP_006111325.1 )

putative AidA-I adhesin-like protein

NC_017632
(Escherichia coli UM146)

0.0

35) UTI89_C1139
( YP_540153.1 )

autotransporter

NC_007946
(Escherichia coli UTI89)

0.0

36) flu2
( YP_001464349.1 )

antigen 43

NC_009801
(Escherichia coli E24377A)

0.0

37) flu_1
( YP_008570983.1 )

Fluffing protein

NC_022370
(Escherichia coli PMV-1)

0.0

38) flu1
( YP_001465820.1 )

antigen 43

NC_009801
(Escherichia coli E24377A)

0.0

39) ECS88_4891
( YP_002394365.1 )

antigen 43 precursor (AG43) (Fluffing protein)

NC_011742
(Escherichia coli S88)

0.0

40) EC042_4803
( YP_006099048.1 )

putative adhesin autotransporter

NC_017626
(Escherichia coli 042)

0.0

41) ECP_3009
( YP_670893.1 )

autotransporter

NC_008253
(Escherichia coli 536)

0.0

42) ROD_49731
( YP_003368339.1 )

adhesin autotransporter

NC_013716
(Citrobacter rodentium ICC168)

0.0

43) flu
( YP_003045987.1 )

antigen 43 (Ag43) phase-variable biofilm formation autotransporter

NC_012967
(Escherichia coli REL606)

0.0

44) ECH74115_1395
( YP_002269864.1 )

pertactin family protein

NC_011353
(Escherichia coli EC4115)

0.0

45) ECs1396
( NP_309423.1 )

AidA-I

NC_002695
(Escherichia coli Sakai)

0.0

46) cah
( YP_003077239.1 )

calcium-binding autotransporter

NC_013008
(Escherichia coli TW14359)

0.0

47) UMNK88_1274
( YP_006133051.1 )

antigen 43 protein

NC_017641
(Escherichia coli UMNK88)

0.0

48) CDCO157_1332
( YP_006312203.1 )

AidA-I adhesin-like protein

NC_017906
(Escherichia coli Xuzhou21)

0.0

49) O3M_00325
( YP_006767750.1 )

antigen 43 precursor (AG43, Fluffing protein)

NC_018650
(Escherichia coli 2009EL-2050)

0.0

50) O3O_25300
( YP_006781870.1 )

antigen 43 precursor (AG43)

NC_018661
(Escherichia coli 2009EL-2071)

0.0

51) O3K_00310
( YP_006776798.1 )

antigen 43 precursor (AG43, Fluffing protein)

NC_018658
(Escherichia coli 2011C-3493)

0.0

52) ECO26_3415
( YP_003230356.1 )

AidA-I adhesin

NC_013361
(Escherichia coli 11368)

0.0

53) ECO26_1353
( YP_003228395.1 )

AidA-I adhesin

NC_013361
(Escherichia coli 11368)

0.0

54) Z1211
( NP_286746.1 )

adhesin

NC_002655
(Escherichia coli EDL933)

0.0

55) Z1651
( NP_287154.1 )

adhesin

NC_002655
(Escherichia coli EDL933)

0.0

56) UMNK88_3699
( YP_006135398.1 )

antigen 43 protein

NC_017641
(Escherichia coli UMNK88)

0.0

57) i14_4885a
( YP_006156941.1 )

antigen 43 precursor (AG43) (Fluffing protein)

NC_017652
(Escherichia coli clone D i14)

0.0

58) i02_4885a
( YP_006152022.1 )

antigen 43 precursor (AG43) (Fluffing protein)

NC_017651
(Escherichia coli clone D i2)

0.0

59) ETEC_2119
( YP_006115681.1 )

putative adhesin autotransporter

NC_017633
(Escherichia coli ETEC H10407)

0.0

60) ECO103_4895
( YP_003224716.1 )

AidA-I adhesin-like protein

NC_013353
(Escherichia coli 12009)

0.0

61) flu
( YP_006118001.1 )

putative antigen 43 precursor (fluffing protein)

NC_017633
(Escherichia coli ETEC H10407)

0.0

62) flu
( YP_003501136.1 )

type V secretory pathway, adhesin AidA

NC_013941
(Escherichia coli CB9615)

0.0

63) ECO55CA74_17450
( YP_006160606.1 )

type V secretory pathway, adhesin AidA

NC_017656
(Escherichia coli RM12579)

0.0

64) CFSAN002050_05940
( YP_008259134.1 )

hypothetical protein

NC_021818
(Salmonella enterica CFSAN002050)

0.0

• Sequence Alignments

1) flu in NC_017328


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score = 1555 bits (5902),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1042/1042 (100%), Positives = 1042/1042 (100%), Gaps = 0/1042 (0%)

Query  1     MLMKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGvavalslaavtslpvlaaDIVVH  60
             MLMKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVH
Sbjct  1     MLMKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVH  60

Query  61    PGETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTAN  120
             PGETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTAN
Sbjct  61    PGETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTAN  120

Query  121   GRQIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTI  180
             GRQIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTI
Sbjct  121   GRQIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTI  180

Query  181   KHGGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYA  240
             KHGGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYA
Sbjct  181   KHGGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYA  240

Query  241   GGDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQV  300
             GGDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQV
Sbjct  241   GGDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQV  300

Query  301   NAGGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTA  360
             NAGGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTA
Sbjct  301   NAGGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTA  360

Query  361   TNTRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALML  420
             TNTRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALML
Sbjct  361   TNTRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALML  420

Query  421   EKGSSFTLNAGDTATDTTVNgglftarggtlagtttlnngaILTLSGKTVNNDTLTIREG  480
             EKGSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREG
Sbjct  421   EKGSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREG  480

Query  481   DALLQGGALTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTA  540
             DALLQGGALTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTA
Sbjct  481   DALLQGGALTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTA  540

Query  541   LKLTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPA  600
             LKLTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPA
Sbjct  541   LKLTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPA  600

Query  601   TLKVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGK  660
             TLKVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGK
Sbjct  601   TLKVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGK  660

Query  661   GIQVVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASML  720
             GIQVVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASML
Sbjct  661   GIQVVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASML  720

Query  721   TQAMDYDRILAGSRSHQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVR  780
             TQAMDYDRILAGSRSHQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVR
Sbjct  721   TQAMDYDRILAGSRSHQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVR  780

Query  781   LEGDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASG  840
             LEGDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASG
Sbjct  781   LEGDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASG  840

Query  841   LWADIVAQGTRHSMKASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLS  900
             LWADIVAQGTRHSMKASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLS
Sbjct  841   LWADIVAQGTRHSMKASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLS  900

Query  901   LDDGQDNASYVKFGHGSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNW  960
             LDDGQDNASYVKFGHGSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNW
Sbjct  901   LDDGQDNASYVKFGHGSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNW  960

Query  961   WVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQASY  1020
             WVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQASY
Sbjct  961   WVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQASY  1020

Query  1021  AHSINGSSAEGYNSQATLNVTF  1042
             AHSINGSSAEGYNSQATLNVTF
Sbjct  1021  AHSINGSSAEGYNSQATLNVTF  1042

2) SF2991 in NC_004337


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score = 1555 bits (5902),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1042/1042 (100%), Positives = 1042/1042 (100%), Gaps = 0/1042 (0%)

Query  1     MLMKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGvavalslaavtslpvlaaDIVVH  60
             MLMKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVH
Sbjct  1     MLMKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVH  60

Query  61    PGETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTAN  120
             PGETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTAN
Sbjct  61    PGETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTAN  120

Query  121   GRQIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTI  180
             GRQIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTI
Sbjct  121   GRQIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTI  180

Query  181   KHGGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYA  240
             KHGGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYA
Sbjct  181   KHGGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYA  240

Query  241   GGDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQV  300
             GGDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQV
Sbjct  241   GGDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQV  300

Query  301   NAGGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTA  360
             NAGGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTA
Sbjct  301   NAGGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTA  360

Query  361   TNTRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALML  420
             TNTRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALML
Sbjct  361   TNTRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALML  420

Query  421   EKGSSFTLNAGDTATDTTVNgglftarggtlagtttlnngaILTLSGKTVNNDTLTIREG  480
             EKGSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREG
Sbjct  421   EKGSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREG  480

Query  481   DALLQGGALTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTA  540
             DALLQGGALTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTA
Sbjct  481   DALLQGGALTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTA  540

Query  541   LKLTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPA  600
             LKLTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPA
Sbjct  541   LKLTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPA  600

Query  601   TLKVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGK  660
             TLKVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGK
Sbjct  601   TLKVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGK  660

Query  661   GIQVVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASML  720
             GIQVVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASML
Sbjct  661   GIQVVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASML  720

Query  721   TQAMDYDRILAGSRSHQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVR  780
             TQAMDYDRILAGSRSHQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVR
Sbjct  721   TQAMDYDRILAGSRSHQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVR  780

Query  781   LEGDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASG  840
             LEGDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASG
Sbjct  781   LEGDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASG  840

Query  841   LWADIVAQGTRHSMKASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLS  900
             LWADIVAQGTRHSMKASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLS
Sbjct  841   LWADIVAQGTRHSMKASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLS  900

Query  901   LDDGQDNASYVKFGHGSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNW  960
             LDDGQDNASYVKFGHGSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNW
Sbjct  901   LDDGQDNASYVKFGHGSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNW  960

Query  961   WVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQASY  1020
             WVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQASY
Sbjct  961   WVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQASY  1020

Query  1021  AHSINGSSAEGYNSQATLNVTF  1042
             AHSINGSSAEGYNSQATLNVTF
Sbjct  1021  AHSINGSSAEGYNSQATLNVTF  1042

3) ECP_0332 in NC_008253


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score = 1532 bits (5816),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 996/1042 (96%), Positives = 1025/1042 (99%), Gaps = 0/1042 (0%)

Query  1     MLMKRHLNTCYRLVWNHITGAFVVASELARARGKRGGvavalslaavtslpvlaaDIVVH  60
             MLMKRHLNTCYRLVWNHITGAFVVASELARA+GKRGGVAVALSLAAVTSLPVLAADIVVH
Sbjct  1     MLMKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVH  60

Query  61    PGETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTAN  120
             PGETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTAN
Sbjct  61    PGETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTAN  120

Query  121   GRQIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTI  180
             GRQIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTI
Sbjct  121   GRQIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTI  180

Query  181   KHGGLATGTIVNTGAEGGPESENVSTGQMVGGTAESTTINNNGRQVIWSSGVSRDTLIYT  240
             KHGGLATGTIVNTGAEGGPESENVS+GQMVGGTAESTTIN+NGRQVIWSSG++RDTLIY+
Sbjct  181   KHGGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYA  240

Query  241   GGDQTVHGEAHNTRLEGGNQYVHKYGLALNTVINEGGWQVVKAGGTAGNTTINQNGELKV  300
             GGDQTVHGEAHNTRLEGGNQYVH+ G A +T+IN +GWQV+K GGTA++TTINQ+G L+V
Sbjct  241   GGDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQV  300

Query  301   HAGGEASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLSGHTA  360
             +AGG ASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVL+GHTA
Sbjct  301   NAGGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTA  360

Query  361   TNTRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGTAFRIGGGQADALML  420
             TNTRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDG AF IGGGQADALML
Sbjct  361   TNTRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALML  420

Query  421   EKGSSFTLNAGDTATDTTVNGGLFTARGGSLAGTTTLNNGAILTLSGKTVNNDTLTIREG  480
             EKGSSFTLNAGDTATDTTVNGGLFTARGG+LAGTTTLNNGAILTLSGKTVNNDTLTIREG
Sbjct  421   EKGSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREG  480

Query  481   DALLQGGSLTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTA  540
             DALLQGG+LTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTA
Sbjct  481   DALLQGGALTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTA  540

Query  541   LKLTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPA  600
             LKLTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPA
Sbjct  541   LKLTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPA  600

Query  601   TLKVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGK  660
             TLKVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGK
Sbjct  601   TLKVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGK  660

Query  661   GIQVVEAINGATTEEGAFVQGNRLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASML  720
             GIQVVEAINGATTEEGAF+QGN+LQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASML
Sbjct  661   GIQVVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASML  720

Query  721   TQAMDYDRILAGSRSHQTGVNVKNNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVR  780
             TQAMDYDRILAGSRSHQTGV+  NNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVR
Sbjct  721   TQAMDYDRILAGSRSHQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVR  780

Query  781   LEGDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLTHTSSG  840
             LEGDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNL H +SG
Sbjct  781   LEGDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASG  840

Query  841   LWADIVAQGTRHSMKASSDNNDFRARGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLS  900
             LWADIVAQGTRHSMKASSDNNDFR RGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLS
Sbjct  841   LWADIVAQGTRHSMKASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLS  900

Query  901   LDDGQDNAGYVKFGHGSAQHVRAGFRLGSHSDMTFGEGTSSRDTLRDSAKHSVRELPVNW  960
             LDDGQDNA+YVKFGHGSAQHVRAGFRLGSH DM FG GTSSRDTLR+SAKHSVRELPVNW
Sbjct  901   LDDGQDNASYVKFGHGSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNW  960

Query  961   WVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQAGY  1020
             WVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQA+Y
Sbjct  961   WVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQASY  1020

Query  1021  AHSVSGSSAEGYNGQATLNVTF  1042
             AHS++GSSAEGYN+QATLNVTF
Sbjct  1021  AHSINGSSAEGYNSQATLNVTF  1042

4) c3655 in NC_004431


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score = 1515 bits (5751),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1000/1042 (96%), Positives = 1031/1042 (99%), Gaps = 0/1042 (0%)

Query  1     MLMKRHLNTCYRLVWNHITGAFVVASELARARGKRGGvavalslaavtplpvlSADIVVH  60
             MLMKRHLNTCYRLVWNHITGAFVVASELARA+GKRGGVAVALSLAAVT+LPVL+ADIVVH
Sbjct  1     MLMKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVH  60

Query  61    PGETVNGGTLVNHDNQFVSGTANGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTAN  120
             PGETVNGGTLVNHDNQFVSGTA+GVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTAN
Sbjct  61    PGETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTAN  120

Query  121   GRQIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTI  180
             GRQIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTI
Sbjct  121   GRQIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTI  180

Query  181   KHGGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYA  240
             KHGGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYA
Sbjct  181   KHGGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYA  240

Query  241   GGDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQV  300
             GGDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQV
Sbjct  241   GGDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQV  300

Query  301   NAGGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVAGKADNVVLENGGRLDVLSGHTA  360
             NAGGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVV GKADNVVLENGGRLDVL+GHTA
Sbjct  301   NAGGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTA  360

Query  361   TNTRVDDGGTLDIRNGGAATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALML  420
             TNTRVDDGGTLD+RNGG+ATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALML
Sbjct  361   TNTRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALML  420

Query  421   EKGSSFTLNAGDTATDTTVNgglftarggtlagtttlnngaILTLSGKTVNNDTLTIREG  480
             EKGSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREG
Sbjct  421   EKGSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREG  480

Query  481   DALLQGGSLTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTA  540
             DALLQGG+LTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTA
Sbjct  481   DALLQGGALTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTA  540

Query  541   LKLTGSTVLNGAIDPTNVTLASDATWNIPDNATVQSVVDDLSHAGQIHFTSSRTGTFVPA  600
             LKLTGSTVLNGAIDPTNVTLAS+ATWNIPDNATVQSVVDDLSHAGQIHFTS+RTG FVPA
Sbjct  541   LKLTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPA  600

Query  601   TLKVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGK  660
             TLKVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGK
Sbjct  601   TLKVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGK  660

Query  661   GIQVVEAINGATTEEGAFVQGNRLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASML  720
             GIQVVEAINGATTEEGAF+QGN+LQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASML
Sbjct  661   GIQVVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASML  720

Query  721   TQAMDYDRILAGSRSHQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVR  780
             TQAMDYDRILAGSRSHQTGV+GENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVR
Sbjct  721   TQAMDYDRILAGSRSHQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVR  780

Query  781   LEGDLLRTDVAGMSVTAGIYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYMNLTHTSSG  840
             LEGDLLRT+VAGMSVTAG+YGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGY+NL H +SG
Sbjct  781   LEGDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASG  840

Query  841   LWADIVAQGTRHSMKASSGNNDFRARGRGWLGSLETGLPFSITDNLMLEPRLQYTWQGLS  900
             LWADIVAQGTRHSMKASS+NNDFR RG+GWLGSLETGLPFSITDNLMLEP+LQYTWQGLS
Sbjct  841   LWADIVAQGTRHSMKASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLS  900

Query  901   LDDGKDNAGYVKFGHGSAQHVRAGFRLGSHNDMTFGEGTSSRAPLRDSAKHSVRELPVNW  960
             LDDG+DNA+YVKFGHGSAQHVRAGFRLGSH+DM FG GTSSR  LR+SAKHSVRELPVNW
Sbjct  901   LDDGQDNASYVKFGHGSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNW  960

Query  961   WVQPSVIRTFSSRGDMRVGTSTAGSGMTFSPSQNGTSLDLQAGLEARVRENITLGVQAGY  1020
             WVQPSVIRTFSSRGDM +GT++AGS MTFSPSQNGTSLDLQAGLEARVRENITLGVQA+Y
Sbjct  961   WVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQASY  1020

Query  1021  AHSVSGSSAEGYNGQATLNVTF  1042
             AHS++GSSAEGYN+QATLNVTF
Sbjct  1021  AHSINGSSAEGYNSQATLNVTF  1042

5) i14_3351 in NC_017652


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score = 1500 bits (5695),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1001/1042 (97%), Positives = 1031/1042 (99%), Gaps = 0/1042 (0%)

Query  1     MLMKRHLNTCYRLVWNHITGAFVVASELARARGKRGGvavalslaavtslpvlaaDIVVH  60
             MLMKRHLNTCYRLVWNHITGAFVVASELARA+GKRGGVAVALSLAAVTSLPVLAADIVVH
Sbjct  1     MLMKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVH  60

Query  61    PCETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTAN  120
             P ETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTAN
Sbjct  61    PGETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTAN  120

Query  121   GRQIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTI  180
             GRQIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTI
Sbjct  121   GRQIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTI  180

Query  181   KHGGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYA  240
             KHGGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYA
Sbjct  181   KHGGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYA  240

Query  241   GGDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQV  300
             GGDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQV
Sbjct  241   GGDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQV  300

Query  301   NAGGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVAGKADNVVLENGGRLDVLSGHTA  360
             NAGGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVV GKADNVVLENGGRLDVL+GHTA
Sbjct  301   NAGGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTA  360

Query  361   TNTRVDDGGTLDIRNGGAATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALML  420
             TNTRVDDGGTLD+RNGG+ATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALML
Sbjct  361   TNTRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALML  420

Query  421   EKGSSFTLNAGDTATDTTVNgglftarggtlagtttlnngatltlsgKTVNNDTLTIREG  480
             EKGSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGA LTLSGKTVNNDTLTIREG
Sbjct  421   EKGSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREG  480

Query  481   DALLQGGALTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTA  540
             DALLQGGALTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTA
Sbjct  481   DALLQGGALTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTA  540

Query  541   LKLTGSTVLNGAIDPTNVTLTSGATWNIPDNATVQSVVDDLSHAGQIHFTSARTGKFVPT  600
             LKLTGSTVLNGAIDPTNVTL+SGATWNIPDNATVQSVVDDLSHAGQIHFTS+RTGKFVP+
Sbjct  541   LKLTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPA  600

Query  601   TLQVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSGTGLATTGK  660
             TL+VKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNS++GLAT+GK
Sbjct  601   TLKVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGK  660

Query  661   GIQVVEAINGATTEEGAFVQGNMLQAGAFNYTLNRDSDESWYLRSENAYRAEVPLYASML  720
             GIQVVEAINGATTEEGAF+QGN LQAGAFNY+LNRDSDESWYLRSENAYRAEVPLYASML
Sbjct  661   GIQVVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASML  720

Query  721   TQAMDYDRILAGSRSHQTGVNGENNSVRLSIQGGHLGHDNNGGIVRGATPESSGSYGFVR  780
             TQAMDYDRILAGSRSHQTGV+GENNSVRLSIQGGHLGHDNNGGI RGATPESSGSYGFVR
Sbjct  721   TQAMDYDRILAGSRSHQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVR  780

Query  781   LEGDLLRTEVAGMSLTTGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLVHTSSG  840
             LEGDLLRTEVAGMS+T+GVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNL+H +SG
Sbjct  781   LEGDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASG  840

Query  841   LWADIVAQGTRHSMKASSDNNDFRARGRGWQGSLETGLPFSITDNLMLEPQLQYTWQGLS  900
             LWADIVAQGTRHSMKASSDNNDFR RG+GW GSLETGLPFSITDNLMLEPQLQYTWQGLS
Sbjct  841   LWADIVAQGTRHSMKASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLS  900

Query  901   LDDGQDNAGYVKFGHGSAQHVRAGFRLGSHNDMTFGEGTSSRDTLRDSTKHGVSELPVNW  960
             LDDGQDNA+YVKFGHGSAQHVRAGFRLGSH+DM FG GTSSRDTLR+S+KH+V ELPVNW
Sbjct  901   LDDGQDNASYVKFGHGSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNW  960

Query  961   WVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSRNGTSLDLQAGLEARVRENITLGVQAGY  1020
             WVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPS+NGTSLDLQAGLEARVRENITLGVQA+Y
Sbjct  961   WVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQASY  1020

Query  1021  AHSVSGNSAEGYNGQATLNVTF  1042
             AHS++G+SAEGYN+QATLNVTF
Sbjct  1021  AHSINGSSAEGYNSQATLNVTF  1042

6) i02_3351 in NC_017651


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score = 1500 bits (5695),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1001/1042 (97%), Positives = 1031/1042 (99%), Gaps = 0/1042 (0%)

Query  1     MLMKRHLNTCYRLVWNHITGAFVVASELARARGKRGGvavalslaavtslpvlaaDIVVH  60
             MLMKRHLNTCYRLVWNHITGAFVVASELARA+GKRGGVAVALSLAAVTSLPVLAADIVVH
Sbjct  1     MLMKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVH  60

Query  61    PCETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTAN  120
             P ETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTAN
Sbjct  61    PGETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTAN  120

Query  121   GRQIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTI  180
             GRQIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTI
Sbjct  121   GRQIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTI  180

Query  181   KHGGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYA  240
             KHGGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYA
Sbjct  181   KHGGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYA  240

Query  241   GGDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQV  300
             GGDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQV
Sbjct  241   GGDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQV  300

Query  301   NAGGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVAGKADNVVLENGGRLDVLSGHTA  360
             NAGGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVV GKADNVVLENGGRLDVL+GHTA
Sbjct  301   NAGGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTA  360

Query  361   TNTRVDDGGTLDIRNGGAATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALML  420
             TNTRVDDGGTLD+RNGG+ATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALML
Sbjct  361   TNTRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALML  420

Query  421   EKGSSFTLNAGDTATDTTVNgglftarggtlagtttlnngatltlsgKTVNNDTLTIREG  480
             EKGSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGA LTLSGKTVNNDTLTIREG
Sbjct  421   EKGSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREG  480

Query  481   DALLQGGALTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTA  540
             DALLQGGALTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTA
Sbjct  481   DALLQGGALTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTA  540

Query  541   LKLTGSTVLNGAIDPTNVTLTSGATWNIPDNATVQSVVDDLSHAGQIHFTSARTGKFVPT  600
             LKLTGSTVLNGAIDPTNVTL+SGATWNIPDNATVQSVVDDLSHAGQIHFTS+RTGKFVP+
Sbjct  541   LKLTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPA  600

Query  601   TLQVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSGTGLATTGK  660
             TL+VKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNS++GLAT+GK
Sbjct  601   TLKVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGK  660

Query  661   GIQVVEAINGATTEEGAFVQGNMLQAGAFNYTLNRDSDESWYLRSENAYRAEVPLYASML  720
             GIQVVEAINGATTEEGAF+QGN LQAGAFNY+LNRDSDESWYLRSENAYRAEVPLYASML
Sbjct  661   GIQVVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASML  720

Query  721   TQAMDYDRILAGSRSHQTGVNGENNSVRLSIQGGHLGHDNNGGIVRGATPESSGSYGFVR  780
             TQAMDYDRILAGSRSHQTGV+GENNSVRLSIQGGHLGHDNNGGI RGATPESSGSYGFVR
Sbjct  721   TQAMDYDRILAGSRSHQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVR  780

Query  781   LEGDLLRTEVAGMSLTTGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLVHTSSG  840
             LEGDLLRTEVAGMS+T+GVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNL+H +SG
Sbjct  781   LEGDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASG  840

Query  841   LWADIVAQGTRHSMKASSDNNDFRARGRGWQGSLETGLPFSITDNLMLEPQLQYTWQGLS  900
             LWADIVAQGTRHSMKASSDNNDFR RG+GW GSLETGLPFSITDNLMLEPQLQYTWQGLS
Sbjct  841   LWADIVAQGTRHSMKASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLS  900

Query  901   LDDGQDNAGYVKFGHGSAQHVRAGFRLGSHNDMTFGEGTSSRDTLRDSTKHGVSELPVNW  960
             LDDGQDNA+YVKFGHGSAQHVRAGFRLGSH+DM FG GTSSRDTLR+S+KH+V ELPVNW
Sbjct  901   LDDGQDNASYVKFGHGSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNW  960

Query  961   WVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSRNGTSLDLQAGLEARVRENITLGVQAGY  1020
             WVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPS+NGTSLDLQAGLEARVRENITLGVQA+Y
Sbjct  961   WVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQASY  1020

Query  1021  AHSVSGNSAEGYNGQATLNVTF  1042
             AHS++G+SAEGYN+QATLNVTF
Sbjct  1021  AHSINGSSAEGYNSQATLNVTF  1042

7) ECABU_c33230 in NC_017631


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score = 1496 bits (5679),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 999/1040 (97%), Positives = 1029/1040 (99%), Gaps = 0/1040 (0%)

Query  1     MKRHLNTCYRLVWNHITGAFVVASELARARGKRGGvavalslaavtslpvlaaDIVVHPC  60
             MKRHLNTCYRLVWNHITGAFVVASELARA+GKRGGVAVALSLAAVTSLPVLAADIVVHP 
Sbjct  3     MKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVHPG  62

Query  61    ETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTANGR  120
             ETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTANGR
Sbjct  63    ETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTANGR  122

Query  121   QIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTIKH  180
             QIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTIKH
Sbjct  123   QIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTIKH  182

Query  181   GGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAGG  240
             GGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAGG
Sbjct  183   GGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAGG  242

Query  241   DQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQVNA  300
             DQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQVNA
Sbjct  243   DQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQVNA  302

Query  301   GGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVAGKADNVVLENGGRLDVLSGHTATN  360
             GGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVV GKADNVVLENGGRLDVL+GHTATN
Sbjct  303   GGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN  362

Query  361   TRVDDGGTLDIRNGGAATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEK  420
             TRVDDGGTLD+RNGG+ATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEK
Sbjct  363   TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEK  422

Query  421   GSSFTLNAGDTATDTTVNgglftarggtlagtttlnngatltlsgKTVNNDTLTIREGDA  480
             GSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGA LTLSGKTVNNDTLTIREGDA
Sbjct  423   GSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREGDA  482

Query  481   LLQGGALTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTALK  540
             LLQGGALTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTALK
Sbjct  483   LLQGGALTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTALK  542

Query  541   LTGSTVLNGAIDPTNVTLTSGATWNIPDNATVQSVVDDLSHAGQIHFTSARTGKFVPTTL  600
             LTGSTVLNGAIDPTNVTL+SGATWNIPDNATVQSVVDDLSHAGQIHFTS+RTGKFVP+TL
Sbjct  543   LTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPATL  602

Query  601   QVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSGTGLATTGKGI  660
             +VKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNS++GLAT+GKGI
Sbjct  603   KVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKGI  662

Query  661   QVVEAINGATTEEGAFVQGNMLQAGAFNYTLNRDSDESWYLRSENAYRAEVPLYASMLTQ  720
             QVVEAINGATTEEGAF+QGN LQAGAFNY+LNRDSDESWYLRSENAYRAEVPLYASMLTQ
Sbjct  663   QVVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLTQ  722

Query  721   AMDYDRILAGSRSHQTGVNGENNSVRLSIQGGHLGHDNNGGIVRGATPESSGSYGFVRLE  780
             AMDYDRILAGSRSHQTGV+GENNSVRLSIQGGHLGHDNNGGI RGATPESSGSYGFVRLE
Sbjct  723   AMDYDRILAGSRSHQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLE  782

Query  781   GDLLRTEVAGMSLTTGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLVHTSSGLW  840
             GDLLRTEVAGMS+T+GVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNL+H +SGLW
Sbjct  783   GDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASGLW  842

Query  841   ADIVAQGTRHSMKASSDNNDFRARGRGWQGSLETGLPFSITDNLMLEPQLQYTWQGLSLD  900
             ADIVAQGTRHSMKASSDNNDFR RG+GW GSLETGLPFSITDNLMLEPQLQYTWQGLSLD
Sbjct  843   ADIVAQGTRHSMKASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLD  902

Query  901   DGQDNAGYVKFGHGSAQHVRAGFRLGSHNDMTFGEGTSSRDTLRDSTKHGVSELPVNWWV  960
             DGQDNA+YVKFGHGSAQHVRAGFRLGSH+DM FG GTSSRDTLR+S+KH+V ELPVNWWV
Sbjct  903   DGQDNASYVKFGHGSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNWWV  962

Query  961   QPSVIRTFSSRGDMSMGTAAAGSNMTFSPSRNGTSLDLQAGLEARVRENITLGVQAGYAH  1020
             QPSVIRTFSSRGDMSMGTAAAGSNMTFSPS+NGTSLDLQAGLEARVRENITLGVQA+YAH
Sbjct  963   QPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQASYAH  1022

Query  1021  SVSGNSAEGYNGQATLNVTF  1040
             S++G+SAEGYN+QATLNVTF
Sbjct  1023  SINGSSAEGYNSQATLNVTF  1042

8) flu in NC_011745


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score = 1486 bits (5639),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 973/1042 (94%), Positives = 1021/1042 (98%), Gaps = 0/1042 (0%)

Query  1     MLMKRHLNTCYRLVWNHITGAFVVVSELARTRGKRGGvavalslaavtslpvlsaDIVVH  60
             MLMKRHLNTCYRLVWNHITGAFVV SELAR++GKRGGVAVALSLAAVTSLPVL+ADIVVH
Sbjct  1     MLMKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVH  60

Query  61    PGETVNGGTLVNHDNQFVSGTANGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTAN  120
             PGETVNGGTLVNHDNQFVSGTA+GVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTAN
Sbjct  61    PGETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTAN  120

Query  121   GRQIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGEGKATGTIINQDGYQTI  180
             GRQIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHG GKA+GTIINQDGYQTI
Sbjct  121   GRQIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTI  180

Query  181   KHGGLATGTIVNTGAEGGPESENVSTGQMVGGTAESTTINNNGRQVIWSSGVSRDTLIYT  240
             KHGGLATGTIVNTGAEGGPESENVS+GQMVGGTAESTTIN+NGRQVIWSSG++RDTLIY+
Sbjct  181   KHGGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYA  240

Query  241   GGDQTVHGEAHNTRLEGGNQYVHKYGLALNTVINEGGWQVVKAGGTAGNTTINQNGELKV  300
             GGDQTVHGEAHNTRLEGGNQYVH+ G A +T+IN +GWQV+K GGTA++TTINQ+G L+V
Sbjct  241   GGDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQV  300

Query  301   HAGGEASDVTQNTGGALVTSTAATVTGTNRLGAFSVVAGKADNVVLENGGRLDVLSGHTA  360
             +AGG ASDVTQNTGGALVTSTAATVTGTNRLGAFSVV GKADNVVLENGGRLDVL+GHTA
Sbjct  301   NAGGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTA  360

Query  361   TNTRVDDGGTLDVRNGGAATTVSMGNGGVLLADSGAAVSGTRSDGTAFRIGGGQADALML  420
             TNTRVDDGGTLDVRNGG+ATTVSMGNGGVLLADSGAAVSGTRSDG AF IGGGQADALML
Sbjct  361   TNTRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALML  420

Query  421   EKGSSFTLNAGDTATDTTVNGGLLTARGGSlagtttlnngatltlSGKTVNNDTLTIREG  480
             EKGSSFTLNAGDTATDTTVNGGL+TARGG+LAGTTTLNNGA LTLSGKTVNNDTLTIREG
Sbjct  421   EKGSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREG  480

Query  481   DALLQGGTLTGNGRVEKSGSGTLTVSNTTLTQKTVNLNEGTLTLNDSTVTTDVIAQRGTT  540
             DALLQGG+LTGNG VEKSGSGTLTVSNTTLTQK+VNLNEGTLTLNDSTVTTDVIAQRGT+
Sbjct  481   DALLQGGALTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTA  540

Query  541   LKLTGSTVLNGAIDPTNVTLTSGATWNIPDNATVQSVVDDLSHAGQIHFTSARTGKFVPT  600
             LKLTGSTVLNGAIDPTNVTL+SGATWNIPDNATVQSVVDDLSHAGQIHFTS+RTGKFVP+
Sbjct  541   LKLTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPA  600

Query  601   TLQVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSGTGLATTGK  660
             TL+VKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNS++GLAT+GK
Sbjct  601   TLKVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGK  660

Query  661   GIQVVEAINGATTEEGAFVQGNMLQAGAFNYTLNRDSDESWYLRSEERYRAEVPLYASML  720
             GIQVVEAINGATTEEGAF+QGN LQAGAFNY+LNRDSDESWYLRSE+ YRAEVPLYASML
Sbjct  661   GIQVVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASML  720

Query  721   TQAMDYDRILAGSRSHQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVR  780
             TQAMDYDRILAGSRSHQTGV+GENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVR
Sbjct  721   TQAMDYDRILAGSRSHQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVR  780

Query  781   LEGDLLRTEVAGMSLTTGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLTHTSSG  840
             LEGDLLRTEVAGMS+T+GVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNL H +SG
Sbjct  781   LEGDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASG  840

Query  841   LWADIVAQGTRHSMKASSDNNDFRARGRGWLGSLETGLPFSITDNLMLEPRLQYTWQGLS  900
             LWADIVAQGTRHSMKASSDNNDFR RG+GWLGSLETGLPFSITDNLMLEP+LQYTWQGLS
Sbjct  841   LWADIVAQGTRHSMKASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLS  900

Query  901   LDDGKDNAGYVKFGHGSAQHVRAGFRLGSHNDMTFGEGTSSRDTLRDSAKHSVRELPVNW  960
             LDDG+DNA+YVKFGHGSAQHVRAGFRLGSH+DM FG GTSSRDTLR+SAKHSVRELPVNW
Sbjct  901   LDDGQDNASYVKFGHGSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNW  960

Query  961   WVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQAGY  1020
             WVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQA+Y
Sbjct  961   WVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQASY  1020

Query  1021  AHSINGSSAEGYNSQATLNVTF  1042
             AHSINGSSAEGYNSQATLNVTF
Sbjct  1021  AHSINGSSAEGYNSQATLNVTF  1042

9) flu2 in NC_017626


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score = 1449 bits (5499),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 958/1042 (92%), Positives = 1004/1042 (97%), Gaps = 1/1042 (0%)

Query  1     MLMKRHLNTCYRLVWNHITGAFVVASELARARGKRGGvavalslaavtslpvlaaDIVVH  60
             MLMKRHLNTCYRLVWNHITGAFVVASELARA+GKRGGVAVALSLAAVTSLPVLAADIVVH
Sbjct  1     MLMKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVH  60

Query  61    PGETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDDNTGGQQIARGGTARNTTVTAN  120
             PGETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSD+NTGGQ I  GGT+RNTTVTAN
Sbjct  61    PGETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTAN  120

Query  121   GLQDVMAGGSATDTVISAGGGQNLRGQAYGTVLNG-GEQWIHAGGSASGTVINQSGYQTI  179
             G Q V AGG+A+DTVI  GGGQ+L G A  T L+  GEQW+H+GG A+GT+INQ GYQTI
Sbjct  121   GRQIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTI  180

Query  180   KHGGQATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYA  239
             KHGG ATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYA
Sbjct  181   KHGGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYA  240

Query  240   GGDQTVHGEAHNTRLEGGNQYVHKYGLALNTVINEGGWQVIKEGGTTAHTTINQKGKLQV  299
             GGDQTVHGEAHNTRLEGGNQYVH+ G A +T+IN +GWQVIKEGGT+AHTTINQKGKLQV
Sbjct  241   GGDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQV  300

Query  300   NAGGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVLAGKADNVVLENGGRLDVLSGHTA  359
             NAGGKASDVTQNTGGALVTSTAATVTGTNRLGAFSV+ GKADNVVLENGGRLDVL+GHTA
Sbjct  301   NAGGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTA  360

Query  360   TNTRVDDGGTLDVRNGGAATTVSMGNGGVLLADSGAAVSGTRSDGTAFRIGGGQADALML  419
             TNTRVDDGGTLDVRNGG+ATTVSMGNGGVLLADSGAAVSGTRSDG AF IGGGQADALML
Sbjct  361   TNTRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALML  420

Query  420   EKGSSFTLNAGDTATDTTVNGGLFTARGGSlagtttlnngatltlSGKTVNNDTLTIREG  479
             EKGSSFTLNAGDTATDTTVNGGLFTARGG+LAGTTTLNNGA LTLSGKTVNNDTLTIREG
Sbjct  421   EKGSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREG  480

Query  480   DALLQGGALTGNGRVEKSGSGTLTVSNTTLTQKTVNLNEGTLTLNDSTVTTDVIAQRGTA  539
             DALLQGGALTGNG VEKSGSGTLTVSNTTLTQK+VNLNEGTLTLNDSTVTTDVIAQRGTA
Sbjct  481   DALLQGGALTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTA  540

Query  540   LKLTGSTVLNGAIDPTNVTLTSGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPA  599
             LKLTGSTVLNGAIDPTNVTL+SGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPA
Sbjct  541   LKLTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPA  600

Query  600   TLQVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSGTGLATTGK  659
             TL+VKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNS++GLAT+GK
Sbjct  601   TLKVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGK  660

Query  660   GIQVVEAINGATTEEGAFVQGNMLQAGAFNYTLNRDSDESWYLRSEERYRAEVPLYASML  719
             GIQVVEAINGATTEEGAF+QGN LQAGAFNY+LNRDSDESWYLRSE+ YRAEVPLYASML
Sbjct  661   GIQVVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASML  720

Query  720   TQAMDYDRILAGSRSHQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVR  779
             TQAMDYDRILAGSRSHQTGV+GENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVR
Sbjct  721   TQAMDYDRILAGSRSHQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVR  780

Query  780   LEGDLLRTEVAGMSLTTGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYMNLTHTSSG  839
             LEGDLLRTEVAGMS+T+GVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGY+NL H +SG
Sbjct  781   LEGDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASG  840

Query  840   LWADIVAQGTRHSMKASSGNNDFRARGWGWLGSLETGLPFSITDNLMLEPRLQYTWQGLS  899
             LWADIVAQGTRHSMKASS+NNDFR RGWGWLGSLETGLPFSITDNLMLEP+LQYTWQGLS
Sbjct  841   LWADIVAQGTRHSMKASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLS  900

Query  900   LDDGKDNAGYVKFGHGSAQHVRAGFRLGSHNDMTFGEGTSSRAPLRDSAKHSVRELPVNW  959
             LDDG+DNA+YVKFGHGSAQHVRAGFRLGSH+DM FG GTSSR  LR+SAKHSVRELPVNW
Sbjct  901   LDDGQDNASYVKFGHGSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNW  960

Query  960   WVQPSVIRTFSSRGDMRVGTSTAGSGMTFSPSQNGTSLDLQAGLEARVRENITLGVQAGY  1019
             WVQPSVIRTFSSRGDM +GT++AGS MTFSPSQNGTSLDLQAGLEARVRENITLGVQA+Y
Sbjct  961   WVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQASY  1020

Query  1020  AHSVSGSSAEGYNSQATLNVTF  1041
             AHS++GSSAEGYNSQATLNVTF
Sbjct  1021  AHSINGSSAEGYNSQATLNVTF  1042

10) flu in NC_011748


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score = 1441 bits (5469),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 966/1042 (93%), Positives = 1005/1042 (97%), Gaps = 1/1042 (0%)

Query  1     MLMKRHLNTCYRLVWNHITGAFVVASELARARGKRGGvavalslaavtslpvlaaDIVVH  60
             MLMKRHLNTCYRLVWNHITGAFVVASELARA+GKRGGVAVALSLAAVTSLPVLAADIVVH
Sbjct  1     MLMKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVH  60

Query  61    PGETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDDNTGGQQIARGGTARNTTVTAN  120
             PGETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSD+NTGGQ I  GGT+RNTTVTAN
Sbjct  61    PGETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTAN  120

Query  121   GLQDVMAGGSATDTVISAGGGQNLRGQAYGTVLNG-GEQWIHAGGSASGTVINQSGYQTI  179
             G Q V AGG+A+DTVI  GGGQ+L G A  T L+  GEQW+H+GG A+GT+INQ GYQTI
Sbjct  121   GRQIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTI  180

Query  180   KHGGQATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYA  239
             KHGG ATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYA
Sbjct  181   KHGGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYA  240

Query  240   GGDQTVHGEAHNTRLEGGNQYVHKYGLALNTVINEGGWQVIKEGGTTAHTTINQKGKLQV  299
             GGDQTVHGEAHNTRLEGGNQYVH+ G A +T+IN +GWQVIKEGGT+AHTTINQKGKLQV
Sbjct  241   GGDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQV  300

Query  300   NAGGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVLAGKADNVVLENGGRLDVLSGHTA  359
             NAGGKASDVTQNTGGALVTSTAATVTGTNRLGAFSV+ GKADNVVLENGGRLDVL+GHTA
Sbjct  301   NAGGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTA  360

Query  360   TNTRVDDGGTLDVRNGGAATTVSMGNGGVLLADSGAAVSGTRSDGTAFRIGGGQADALML  419
             TNTRVDDGGTLDVRNGG+ATTVSMGNGGVLLADSGAAVSGTRSDG AF IGGGQADALML
Sbjct  361   TNTRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALML  420

Query  420   EKGSSFTLNAGDTATDTTVNgglftarggtlagtttlnngaILTLSGKTVNNDTLTIREG  479
             EKGSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREG
Sbjct  421   EKGSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREG  480

Query  480   DALLQGGALTGNGRVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTA  539
             DALLQGGALTGNG VEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTA
Sbjct  481   DALLQGGALTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTA  540

Query  540   LKLTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPA  599
             LKLTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPA
Sbjct  541   LKLTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPA  600

Query  600   TLKVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGK  659
             TLKVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGK
Sbjct  601   TLKVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGK  660

Query  660   GIQVVEAINGATTEEGAFVQGNMLQAGAFNYTLNRDSDESWYLRSEERYRAEVPLYASML  719
             GIQVVEAINGATTEEGAF+QGN LQAGAFNY+LNRDSDESWYLRSE+ YRAEVPLYASML
Sbjct  661   GIQVVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASML  720

Query  720   TQAMDYDRILAGSRSHQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVR  779
             TQAMDYDRILAGSRSHQTGV+GENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVR
Sbjct  721   TQAMDYDRILAGSRSHQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVR  780

Query  780   LEGDLLRTEVAGMSLTTGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYMNLTHTSSG  839
             LEGDLLRTEVAGMS+T+GVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGY+NL H +SG
Sbjct  781   LEGDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASG  840

Query  840   LWADIVAQGTRHSMKASSGNNDFRARGWGWLGSLETGLPFSITDNLMLEPRLQYTWQGLS  899
             LWADIVAQGTRHSMKASS+NNDFR RGWGWLGSLETGLPFSITDNLMLEP+LQYTWQGLS
Sbjct  841   LWADIVAQGTRHSMKASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLS  900

Query  900   LDDGKDNAGYVKFGHGSAQHVRAGFRLGSHNDMTFGEGTSSRAPLRDSAKHSVRELPVNW  959
             LDDG+DNA+YVKFGHGSAQHVRAGFRLGSH+DM FG GTSSR  LR+SAKHSVRELPVNW
Sbjct  901   LDDGQDNASYVKFGHGSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNW  960

Query  960   WVQPSVIRTFSSRGDMRVGTSTAGSGMTFSPSQNGTSLDLQAGLEARVRENITLGVQAGY  1019
             WVQPSVIRTFSSRGDM +GT++AGS MTFSPSQNGTSLDLQAGLEARVRENITLGVQA+Y
Sbjct  961   WVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQASY  1020

Query  1020  AHSVSGSSAEGYNSQATLNVTF  1041
             AHS++GSSAEGYNSQATLNVTF
Sbjct  1021  AHSINGSSAEGYNSQATLNVTF  1042

11) O3M_04255 in NC_018650


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score = 1441 bits (5469),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 955/1040 (92%), Positives = 1001/1040 (97%), Gaps = 1/1040 (0%)

Query  1     MKRHLNTCYRLVWNHITGAFVVASELARARGKRGGvavalslaavtslpvlaaDIVVHPG  60
             MKRHLNTCYRLVWNHITGAFVVASELARA+GKRGGVAVALSLAAVTSLPVLAADIVVHPG
Sbjct  3     MKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVHPG  62

Query  61    ETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDDNTGGQQIARGGTARNTTVTANGL  120
             ETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSD+NTGGQ I  GGT+RNTTVTANG 
Sbjct  63    ETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTANGR  122

Query  121   QDVMAGGSATDTVISAGGGQNLRGQAYGTVLNG-GEQWIHAGGSASGTVINQSGYQTIKH  179
             Q V AGG+A+DTVI  GGGQ+L G A  T L+  GEQW+H+GG A+GT+INQ GYQTIKH
Sbjct  123   QIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTIKH  182

Query  180   GGQATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAGG  239
             GG ATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAGG
Sbjct  183   GGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAGG  242

Query  240   DQTVHGEAHNTRLEGGNQYVHKYGLALNTVINEGGWQVIKEGGTTAHTTINQKGKLQVNA  299
             DQTVHGEAHNTRLEGGNQYVH+ G A +T+IN +GWQVIKEGGT+AHTTINQKGKLQVNA
Sbjct  243   DQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQVNA  302

Query  300   GGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVLAGKADNVVLENGGRLDVLSGHTATN  359
             GGKASDVTQNTGGALVTSTAATVTGTNRLGAFSV+ GKADNVVLENGGRLDVL+GHTATN
Sbjct  303   GGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN  362

Query  360   TRVDDGGTLDVRNGGAATTVSMGNGGVLLADSGAAVSGTRSDGTAFRIGGGQADALMLEK  419
             TRVDDGGTLDVRNGG+ATTVSMGNGGVLLADSGAAVSGTRSDG AF IGGGQADALMLEK
Sbjct  363   TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEK  422

Query  420   GSSFTLNAGDTATDTTVNGGLFTARGGSlagtttlnngatltlSGKTVNNDTLTIREGDA  479
             GSSFTLNAGDTATDTTVNGGLFTARGG+LAGTTTLNNGA LTLSGKTVNNDTLTIREGDA
Sbjct  423   GSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREGDA  482

Query  480   LLQGGALTGNGRVEKSGSGTLTVSNTTLTQKTVNLNEGTLTLNDSTVTTDVIAQRGTALK  539
             LLQGGALTGNG VEKSGSGTLTVSNTTLTQK+VNLNEGTLTLNDSTVTTDVIAQRGTALK
Sbjct  483   LLQGGALTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTALK  542

Query  540   LTGSTVLNGAIDPTNVTLTSGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPATL  599
             LTGSTVLNGAIDPTNVTL+SGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPATL
Sbjct  543   LTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPATL  602

Query  600   QVKNLNGQNGTISLRVCPDMAQNNADRLVIDGGRATGKTILNLVNAGNSGTGLATTGKGI  659
             +VKNLNGQNGTISLRV PDMAQNNADRLVIDGGRATGKTILNLVNAGNS++GLAT+GKGI
Sbjct  603   KVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKGI  662

Query  660   QVVEAINGATTEEGAFVQGNMLQAGAFNYTLNRDSDESWYLRSEERYRAEVPLYASMLTQ  719
             QVVEAINGATTEEGAF+QGN LQAGAFNY+LNRDSDESWYLRSE+ YRAEVPLYASMLTQ
Sbjct  663   QVVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLTQ  722

Query  720   AMDYDRILAGSRSHQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLE  779
             AMDYDRILAGSRSHQTGV+GENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLE
Sbjct  723   AMDYDRILAGSRSHQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLE  782

Query  780   GDLLRTEVAGMSLTTGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYMNLTHTSSGLW  839
             GDLLRTEVAGMS+T+GVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGY+NL H +SGLW
Sbjct  783   GDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASGLW  842

Query  840   ADIVAQGTRHSMKASSGNNDFRARGWGWLGSLETGLPFSITDNLMLEPRLQYTWQGLSLD  899
             ADIVAQGTRHSMKASS+NNDFR RGWGWLGSLETGLPFSITDNLMLEP+LQYTWQGLSLD
Sbjct  843   ADIVAQGTRHSMKASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLD  902

Query  900   DGKDNAGYVKFGHGSAQHVRAGFRLGSHNDMTFGEGTSSRAPLRDSAKHSVRELPVNWWV  959
             DG+DNA+YVKFGHGSAQHVRAGFRLGSH+DM FG GTSSR  LR+SAKHSVRELPVNWWV
Sbjct  903   DGQDNASYVKFGHGSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNWWV  962

Query  960   QPSVIRTFSSRGDMRVGTSTAGSGMTFSPSQNGTSLDLQAGLEARVRENITLGVQAGYAH  1019
             QPSVIRTFSSRGDM +GT++AGS MTFSPSQNGTSLDLQAGLEARVRENITLGVQA+YAH
Sbjct  963   QPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQASYAH  1022

Query  1020  SVSGSSAEGYNSQATLNVTF  1039
             S++GSSAEGYNSQATLNVTF
Sbjct  1023  SINGSSAEGYNSQATLNVTF  1042

12) O3O_21435 in NC_018661


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score = 1441 bits (5469),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 955/1040 (92%), Positives = 1001/1040 (97%), Gaps = 1/1040 (0%)

Query  1     MKRHLNTCYRLVWNHITGAFVVASELARARGKRGGvavalslaavtslpvlaaDIVVHPG  60
             MKRHLNTCYRLVWNHITGAFVVASELARA+GKRGGVAVALSLAAVTSLPVLAADIVVHPG
Sbjct  3     MKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVHPG  62

Query  61    ETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDDNTGGQQIARGGTARNTTVTANGL  120
             ETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSD+NTGGQ I  GGT+RNTTVTANG 
Sbjct  63    ETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTANGR  122

Query  121   QDVMAGGSATDTVISAGGGQNLRGQAYGTVLNG-GEQWIHAGGSASGTVINQSGYQTIKH  179
             Q V AGG+A+DTVI  GGGQ+L G A  T L+  GEQW+H+GG A+GT+INQ GYQTIKH
Sbjct  123   QIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTIKH  182

Query  180   GGQATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAGG  239
             GG ATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAGG
Sbjct  183   GGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAGG  242

Query  240   DQTVHGEAHNTRLEGGNQYVHKYGLALNTVINEGGWQVIKEGGTTAHTTINQKGKLQVNA  299
             DQTVHGEAHNTRLEGGNQYVH+ G A +T+IN +GWQVIKEGGT+AHTTINQKGKLQVNA
Sbjct  243   DQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQVNA  302

Query  300   GGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVLAGKADNVVLENGGRLDVLSGHTATN  359
             GGKASDVTQNTGGALVTSTAATVTGTNRLGAFSV+ GKADNVVLENGGRLDVL+GHTATN
Sbjct  303   GGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN  362

Query  360   TRVDDGGTLDVRNGGAATTVSMGNGGVLLADSGAAVSGTRSDGTAFRIGGGQADALMLEK  419
             TRVDDGGTLDVRNGG+ATTVSMGNGGVLLADSGAAVSGTRSDG AF IGGGQADALMLEK
Sbjct  363   TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEK  422

Query  420   GSSFTLNAGDTATDTTVNGGLFTARGGSlagtttlnngatltlSGKTVNNDTLTIREGDA  479
             GSSFTLNAGDTATDTTVNGGLFTARGG+LAGTTTLNNGA LTLSGKTVNNDTLTIREGDA
Sbjct  423   GSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREGDA  482

Query  480   LLQGGALTGNGRVEKSGSGTLTVSNTTLTQKTVNLNEGTLTLNDSTVTTDVIAQRGTALK  539
             LLQGGALTGNG VEKSGSGTLTVSNTTLTQK+VNLNEGTLTLNDSTVTTDVIAQRGTALK
Sbjct  483   LLQGGALTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTALK  542

Query  540   LTGSTVLNGAIDPTNVTLTSGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPATL  599
             LTGSTVLNGAIDPTNVTL+SGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPATL
Sbjct  543   LTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPATL  602

Query  600   QVKNLNGQNGTISLRVCPDMAQNNADRLVIDGGRATGKTILNLVNAGNSGTGLATTGKGI  659
             +VKNLNGQNGTISLRV PDMAQNNADRLVIDGGRATGKTILNLVNAGNS++GLAT+GKGI
Sbjct  603   KVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKGI  662

Query  660   QVVEAINGATTEEGAFVQGNMLQAGAFNYTLNRDSDESWYLRSEERYRAEVPLYASMLTQ  719
             QVVEAINGATTEEGAF+QGN LQAGAFNY+LNRDSDESWYLRSE+ YRAEVPLYASMLTQ
Sbjct  663   QVVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLTQ  722

Query  720   AMDYDRILAGSRSHQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLE  779
             AMDYDRILAGSRSHQTGV+GENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLE
Sbjct  723   AMDYDRILAGSRSHQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLE  782

Query  780   GDLLRTEVAGMSLTTGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYMNLTHTSSGLW  839
             GDLLRTEVAGMS+T+GVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGY+NL H +SGLW
Sbjct  783   GDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASGLW  842

Query  840   ADIVAQGTRHSMKASSGNNDFRARGWGWLGSLETGLPFSITDNLMLEPRLQYTWQGLSLD  899
             ADIVAQGTRHSMKASS+NNDFR RGWGWLGSLETGLPFSITDNLMLEP+LQYTWQGLSLD
Sbjct  843   ADIVAQGTRHSMKASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLD  902

Query  900   DGKDNAGYVKFGHGSAQHVRAGFRLGSHNDMTFGEGTSSRAPLRDSAKHSVRELPVNWWV  959
             DG+DNA+YVKFGHGSAQHVRAGFRLGSH+DM FG GTSSR  LR+SAKHSVRELPVNWWV
Sbjct  903   DGQDNASYVKFGHGSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNWWV  962

Query  960   QPSVIRTFSSRGDMRVGTSTAGSGMTFSPSQNGTSLDLQAGLEARVRENITLGVQAGYAH  1019
             QPSVIRTFSSRGDM +GT++AGS MTFSPSQNGTSLDLQAGLEARVRENITLGVQA+YAH
Sbjct  963   QPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQASYAH  1022

Query  1020  SVSGSSAEGYNSQATLNVTF  1039
             S++GSSAEGYNSQATLNVTF
Sbjct  1023  SINGSSAEGYNSQATLNVTF  1042

13) O3K_04220 in NC_018658


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score = 1441 bits (5469),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 955/1040 (92%), Positives = 1001/1040 (97%), Gaps = 1/1040 (0%)

Query  1     MKRHLNTCYRLVWNHITGAFVVASELARARGKRGGvavalslaavtslpvlaaDIVVHPG  60
             MKRHLNTCYRLVWNHITGAFVVASELARA+GKRGGVAVALSLAAVTSLPVLAADIVVHPG
Sbjct  3     MKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVHPG  62

Query  61    ETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDDNTGGQQIARGGTARNTTVTANGL  120
             ETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSD+NTGGQ I  GGT+RNTTVTANG 
Sbjct  63    ETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTANGR  122

Query  121   QDVMAGGSATDTVISAGGGQNLRGQAYGTVLNG-GEQWIHAGGSASGTVINQSGYQTIKH  179
             Q V AGG+A+DTVI  GGGQ+L G A  T L+  GEQW+H+GG A+GT+INQ GYQTIKH
Sbjct  123   QIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTIKH  182

Query  180   GGQATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAGG  239
             GG ATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAGG
Sbjct  183   GGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAGG  242

Query  240   DQTVHGEAHNTRLEGGNQYVHKYGLALNTVINEGGWQVIKEGGTTAHTTINQKGKLQVNA  299
             DQTVHGEAHNTRLEGGNQYVH+ G A +T+IN +GWQVIKEGGT+AHTTINQKGKLQVNA
Sbjct  243   DQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQVNA  302

Query  300   GGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVLAGKADNVVLENGGRLDVLSGHTATN  359
             GGKASDVTQNTGGALVTSTAATVTGTNRLGAFSV+ GKADNVVLENGGRLDVL+GHTATN
Sbjct  303   GGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN  362

Query  360   TRVDDGGTLDVRNGGAATTVSMGNGGVLLADSGAAVSGTRSDGTAFRIGGGQADALMLEK  419
             TRVDDGGTLDVRNGG+ATTVSMGNGGVLLADSGAAVSGTRSDG AF IGGGQADALMLEK
Sbjct  363   TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEK  422

Query  420   GSSFTLNAGDTATDTTVNGGLFTARGGSlagtttlnngatltlSGKTVNNDTLTIREGDA  479
             GSSFTLNAGDTATDTTVNGGLFTARGG+LAGTTTLNNGA LTLSGKTVNNDTLTIREGDA
Sbjct  423   GSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREGDA  482

Query  480   LLQGGALTGNGRVEKSGSGTLTVSNTTLTQKTVNLNEGTLTLNDSTVTTDVIAQRGTALK  539
             LLQGGALTGNG VEKSGSGTLTVSNTTLTQK+VNLNEGTLTLNDSTVTTDVIAQRGTALK
Sbjct  483   LLQGGALTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTALK  542

Query  540   LTGSTVLNGAIDPTNVTLTSGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPATL  599
             LTGSTVLNGAIDPTNVTL+SGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPATL
Sbjct  543   LTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPATL  602

Query  600   QVKNLNGQNGTISLRVCPDMAQNNADRLVIDGGRATGKTILNLVNAGNSGTGLATTGKGI  659
             +VKNLNGQNGTISLRV PDMAQNNADRLVIDGGRATGKTILNLVNAGNS++GLAT+GKGI
Sbjct  603   KVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKGI  662

Query  660   QVVEAINGATTEEGAFVQGNMLQAGAFNYTLNRDSDESWYLRSEERYRAEVPLYASMLTQ  719
             QVVEAINGATTEEGAF+QGN LQAGAFNY+LNRDSDESWYLRSE+ YRAEVPLYASMLTQ
Sbjct  663   QVVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLTQ  722

Query  720   AMDYDRILAGSRSHQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLE  779
             AMDYDRILAGSRSHQTGV+GENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLE
Sbjct  723   AMDYDRILAGSRSHQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLE  782

Query  780   GDLLRTEVAGMSLTTGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYMNLTHTSSGLW  839
             GDLLRTEVAGMS+T+GVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGY+NL H +SGLW
Sbjct  783   GDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASGLW  842

Query  840   ADIVAQGTRHSMKASSGNNDFRARGWGWLGSLETGLPFSITDNLMLEPRLQYTWQGLSLD  899
             ADIVAQGTRHSMKASS+NNDFR RGWGWLGSLETGLPFSITDNLMLEP+LQYTWQGLSLD
Sbjct  843   ADIVAQGTRHSMKASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLD  902

Query  900   DGKDNAGYVKFGHGSAQHVRAGFRLGSHNDMTFGEGTSSRAPLRDSAKHSVRELPVNWWV  959
             DG+DNA+YVKFGHGSAQHVRAGFRLGSH+DM FG GTSSR  LR+SAKHSVRELPVNWWV
Sbjct  903   DGQDNASYVKFGHGSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNWWV  962

Query  960   QPSVIRTFSSRGDMRVGTSTAGSGMTFSPSQNGTSLDLQAGLEARVRENITLGVQAGYAH  1019
             QPSVIRTFSSRGDM +GT++AGS MTFSPSQNGTSLDLQAGLEARVRENITLGVQA+YAH
Sbjct  963   QPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQASYAH  1022

Query  1020  SVSGSSAEGYNSQATLNVTF  1039
             S++GSSAEGYNSQATLNVTF
Sbjct  1023  SINGSSAEGYNSQATLNVTF  1042

14) flu in NC_011751


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score = 1434 bits (5443),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 965/1042 (93%), Positives = 1005/1042 (97%), Gaps = 1/1042 (0%)

Query  1     MLMKRHLNTCYRLVWNHITGAFVVASELARARGKRGGvavalslaavtslpvlaaDIVVH  60
             MLMKRHLNTCYRLVWNHITGAFVVASELARA+GKRGGVAVALSLAAVTSLPVLAADIVVH
Sbjct  1     MLMKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVH  60

Query  61    PGETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDDNTGGQQIARGGTARNTTVTAN  120
             PGETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSD+NTGGQ I  GGT+RNTTVTAN
Sbjct  61    PGETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTAN  120

Query  121   GLQDVMAGGSATDTVISAGGGQNLRGQAYGTVLNG-GEQWIHAGGSASGTVINQSGYQTI  179
             G Q V AGG+A+DTVI  GGGQ+L G A  T L+  GEQW+H+GG A+GT+INQ GYQTI
Sbjct  121   GRQIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTI  180

Query  180   KHGGQATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYA  239
             KHGG ATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYA
Sbjct  181   KHGGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYA  240

Query  240   GGDQTVHGEAHNTRLEGGNQYVHKYGLALNTVINEGGWQVVKAGGTAGNTTINQNGELKV  299
             GGDQTVHGEAHNTRLEGGNQYVH+ G A +T+IN +GWQV+K GGTA++TTINQ+G L+V
Sbjct  241   GGDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQV  300

Query  300   HAGGEASDVTQNTGGALVTSTAATVTGTNRLGAFSVVAGKADNVVLENGGRLDVLSGHTA  359
             +AGG ASDVTQNTGGALVTSTAATVTGTNRLGAFSVV GKADNVVLENGGRLDVL+GHTA
Sbjct  301   NAGGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTA  360

Query  360   TNTRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALML  419
             TNTRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALML
Sbjct  361   TNTRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALML  420

Query  420   EKGSSFTLNAGDTATDTTVNgglftarggtlagtttlnngaILTLSGKTVNNDTLTIREG  479
             EKGSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREG
Sbjct  421   EKGSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREG  480

Query  480   DALLQGGSLTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTA  539
             DALLQGG+LTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTA
Sbjct  481   DALLQGGALTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTA  540

Query  540   LKLTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPA  599
             LKLTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPA
Sbjct  541   LKLTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPA  600

Query  600   TLKVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGK  659
             TLKVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGK
Sbjct  601   TLKVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGK  660

Query  660   GIQVVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASML  719
             GIQVVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASML
Sbjct  661   GIQVVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASML  720

Query  720   TQAMDYDRILAGSRSHQTGVNGENNSARLSIQGGHLGHDNNGGIARGATPESSGSYGFVR  779
             TQAMDYDRILAGSRSHQTGV+GENNS RLSIQGGHLGHDNNGGIARGATPESSGSYGFVR
Sbjct  721   TQAMDYDRILAGSRSHQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVR  780

Query  780   LEGDLLRTEVAGMSLTTGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYMNLTHTSSG  839
             LEGDLLRTEVAGMS+T+GVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGY+NL H +SG
Sbjct  781   LEGDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASG  840

Query  840   LWADIVAQGTRHSMKASSGNNDFRARGRGWLGSLETGLPFSITDNLMLEPRLQYTWQGLS  899
             LWADIVAQGTRHSMKASS+NNDFR RG+GWLGSLETGLPFSITDNLMLEP+LQYTWQGLS
Sbjct  841   LWADIVAQGTRHSMKASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLS  900

Query  900   LDDGKDNAGYVKFGHGSAQHVRAGFRLGSHNDMTFGEGTSSRAPLRDSAKHSVRELPVNW  959
             LDDG+DNA+YVKFGHGSAQHVRAGFRLGSH+DM FG GTSSR  LR+SAKHSVRELPVNW
Sbjct  901   LDDGQDNASYVKFGHGSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNW  960

Query  960   WVQPSVIRTFSSRGDMRVGTSTAGSGMTFSPSQNGTSLVLQAGLEARVRENITLGVQAGY  1019
             WVQPSVIRTFSSRGDM +GT++AGS MTFSPSQNGTSL LQAGLEARVRENITLGVQA+Y
Sbjct  961   WVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQASY  1020

Query  1020  AHSINGSSAESYNSQATLNVTF  1041
             AHSINGSSAE+YNSQATLNVTF
Sbjct  1021  AHSINGSSAEGYNSQATLNVTF  1042

15) ECABU_c12300 in NC_017631


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score = 1420 bits (5390),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 928/1040 (90%), Positives = 992/1040 (96%), Gaps = 1/1040 (0%)

Query  1     MKRHLNTSYRLVWNHITGAFVVASELarargkragvavalslaaatslpalaaDSVVPAG  60
             MKRHLNT YRLVWNHITGAFVVASELARA+GKR+GVAVALSLAA TSLP LAAD VV +G
Sbjct  3     MKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVHPG  62

Query  61    ETVNGGTLINHDRQFVSGTADGMTVSTGLELGADSDNNTGGQQIARGGTARNTRVTANGL  120
             ETVNGGTL+NHD QFVSGTADG+TVSTGLELG+DSD+NTGGQ I  GGT+RNT VTANG 
Sbjct  63    ETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTANGR  122

Query  121   QDVMAGGSTSDTVISTGGGQNLRGKASGTVLNG-GDQWIHAGGRASGTVINQDGYQTIKH  179
             Q V AGG++SDTVI  GGGQ+L G A  T L+  G+QW+H+GG+A+GT+INQDGYQTIKH
Sbjct  123   QIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTIKH  182

Query  180   GGLVTGTIVNTGAEGGPDSENVSTGQMVGGIAESTTINKNGRQVIWSSGIARDTLIYTGG  239
             GGL TGTIVNTGAEGGP+SENVS+GQMVGG AESTTINKNGRQVIWSSG+ARDTLIY+GG
Sbjct  183   GGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAGG  242

Query  240   DQTVHGEAHNTRLEGGNQYVHKYGLALNTVINEGGWQVVKAGGTAGNTTINQNGELRVHA  299
             DQTVHGEAHNTRLEGGNQYVH+ G A +T+IN +GWQV+K GGTA++TTINQ+G L+V+A
Sbjct  243   DQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQVNA  302

Query  300   GGEASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLSGHTATR  359
             GG ASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVL+GHTAT 
Sbjct  303   GGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN  362

Query  360   TLVDDGGTLDVRNGGTATAVSMGNGGVLLADSGAAVSGTRSDGTAFRIGGGQADALMLEK  419
             T VDDGGTLDVRNGGTAT+VSMGNGGVLLADSGAAVSGTRSDG AF IGGGQADALMLEK
Sbjct  363   TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEK  422

Query  420   GSSFTLNAGDTATDTTVNGGLFTARGGSLAGTTTLNNGATFTLAGKTVNNDTLTIREGDA  479
             GSSFTLNAGDTATDTTVNGGLFTARGG+LAGTTTLNNGA +TL+GKTVNNDTLTIREGDA
Sbjct  423   GSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREGDA  482

Query  480   LLQGGALTGNGRVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDIIAHRGTALK  539
             LLQGGALTGNG VEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTD+IA+RGTALK
Sbjct  483   LLQGGALTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTALK  542

Query  540   LTGSTVLNGAIDPTNVTLTSGATWNIPDNATVQSVVDDLSHAGQIHFTSARTGKFVPTTL  599
             LTGSTVLNGAIDPTNVTL+SGATWNIPDNATVQSVVDDLSHAGQIHFTS+RTGKFVP+TL
Sbjct  543   LTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPATL  602

Query  600   QVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSGTGLATTGKGI  659
             +VKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNS++GLAT+GKGI
Sbjct  603   KVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKGI  662

Query  660   QVVEAINGATTEEGAFVQGNMLQAGAFNYTLNRDSDESWYLRSEERYRAEVPLYASMLTQ  719
             QVVEAINGATTEEGAF+QGN LQAGAFNY+LNRDSDESWYLRSE+ YRAEVPLYASMLTQ
Sbjct  663   QVVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLTQ  722

Query  720   AMDYDRILAGSRSHQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLE  779
             AMDYDRILAGSRSHQTGV+GENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLE
Sbjct  723   AMDYDRILAGSRSHQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLE  782

Query  780   GDLLRTEVAGMSLTTGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYMNLTHTSSGLW  839
             GDLLRTEVAGMS+T+GVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGY+NL H +SGLW
Sbjct  783   GDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASGLW  842

Query  840   ADIVAQGTRHSMKASSDNNDFRARGRGWLGSLETGLPFSITDNLMLEPRLQYTWQGLSLD  899
             ADIVAQGTRHSMKASSDNNDFR RG+GWLGSLETGLPFSITDNLMLEP+LQYTWQGLSLD
Sbjct  843   ADIVAQGTRHSMKASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLD  902

Query  900   DGKDNAGYVKFGHGSAQHVRAGFRLGSHNDMTFGEGTSSRAPLRDSAKHSVRELPVNWWV  959
             DG+DNA+YVKFGHGSAQHVRAGFRLGSH+DM FG GTSSR  LR+SAKHSVRELPVNWWV
Sbjct  903   DGQDNASYVKFGHGSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNWWV  962

Query  960   QPSVIRTFSSRGDMRVGTSTAGSGMTFSPSQNGTSLDLQAGLEARVRENITLGVQAGYAH  1019
             QPSVIRTFSSRGDM +GT++AGS MTFSPSQNGTSLDLQAGLEARVRENITLGVQA+YAH
Sbjct  963   QPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQASYAH  1022

Query  1020  SINGSSAEGYNSQATLNVTF  1039
             SINGSSAEGYNSQATLNVTF
Sbjct  1023  SINGSSAEGYNSQATLNVTF  1042

16) c1273 in NC_004431


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score = 1419 bits (5386),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 930/1042 (90%), Positives = 994/1042 (96%), Gaps = 1/1042 (0%)

Query  51    MLMKRHLNTSYRLVWNHITGAFVVASELarargkragvavalslaaatslpalaaDSVVP  110
             MLMKRHLNT YRLVWNHITGAFVVASELARA+GKR+GVAVALSLAA TSLP LAAD VV 
Sbjct  1     MLMKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVH  60

Query  111   AGETVNGGTLINHDRQFVSGTADGMTVSTGLELGADSDNNTGGQQIARGGTARNTRVTAN  170
             +GETVNGGTL+NHD QFVSGTADG+TVSTGLELG+DSD+NTGGQ I  GGT+RNT VTAN
Sbjct  61    PGETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTAN  120

Query  171   GLQDVMAGGSTSDTVISTGGGQNLRGKASGTVLNG-GDQWIHAGGRASGTVINQDGYQTI  229
             G Q V AGG++SDTVI  GGGQ+L G A  T L+  G+QW+H+GG+A+GT+INQDGYQTI
Sbjct  121   GRQIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTI  180

Query  230   KHGGLVTGTIVNTGAEGGPDSENVSTGQMVGGIAESTTINKNGRQVIWSSGIARDTLIYT  289
             KHGGL TGTIVNTGAEGGP+SENVS+GQMVGG AESTTINKNGRQVIWSSG+ARDTLIY+
Sbjct  181   KHGGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYA  240

Query  290   GGDQTVHGEAHNTRLEGGNQYVHKYGLALNTVINEGGWQVVKAGGTAGNTTINQNGELRV  349
             GGDQTVHGEAHNTRLEGGNQYVH+ G A +T+IN +GWQV+K GGTA++TTINQ+G L+V
Sbjct  241   GGDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQV  300

Query  350   HAGGEASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLSGHTA  409
             +AGG ASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVL+GHTA
Sbjct  301   NAGGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTA  360

Query  410   TRTLVDDGGTLDVRNGGTATAVSMGNGGVLLADSGAAVSGTRSDGTAFRIGGGQADALML  469
             T T VDDGGTLDVRNGGTAT+VSMGNGGVLLADSGAAVSGTRSDG AF IGGGQADALML
Sbjct  361   TNTRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALML  420

Query  470   EKGSSFTLNAGDTATDTTVNGGLFTARGGSLAGTTTLNNGATFTLAGKTVNNDTLTIREG  529
             EKGSSFTLNAGDTATDTTVNGGLFTARGG+LAGTTTLNNGA +TL+GKTVNNDTLTIREG
Sbjct  421   EKGSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREG  480

Query  530   DALLQGGALTGNGRVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDIIAHRGTA  589
             DALLQGGALTGNG VEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTD+IA+RGTA
Sbjct  481   DALLQGGALTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTA  540

Query  590   LKLTGSTVLNGAIDPTNVTLTSGATWNIPDNATVQSVVDDLSHAGQIHFTSARTGKFVPT  649
             LKLTGSTVLNGAIDPTNVTL+SGATWNIPDNATVQSVVDDLSHAGQIHFTS+RTGKFVP+
Sbjct  541   LKLTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPA  600

Query  650   TLQVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSGTGLATTGK  709
             TL+VKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNS++GLAT+GK
Sbjct  601   TLKVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGK  660

Query  710   GIQVVEAINGATTEEGAFVQGNMLQAGAFNYTLNRDSDESWYLRSEERYRAEVPLYASML  769
             GIQVVEAINGATTEEGAF+QGN LQAGAFNY+LNRDSDESWYLRSE+ YRAEVPLYASML
Sbjct  661   GIQVVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASML  720

Query  770   TQAMDYDRILAGSRSHQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVR  829
             TQAMDYDRILAGSRSHQTGV+GENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVR
Sbjct  721   TQAMDYDRILAGSRSHQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVR  780

Query  830   LEGDLLRTEVAGMSLTTGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYMNLTHTSSG  889
             LEGDLLRTEVAGMS+T+GVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGY+NL H +SG
Sbjct  781   LEGDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASG  840

Query  890   LWADIVAQGTRHSMKASSDNNDFRARGRGWLGSLETGLPFSITDNLMLEPRLQYTWQGLS  949
             LWADIVAQGTRHSMKASSDNNDFR RG+GWLGSLETGLPFSITDNLMLEP+LQYTWQGLS
Sbjct  841   LWADIVAQGTRHSMKASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLS  900

Query  950   LDDGKDNAGYVKFGHGSAQHVRAGFRLGSHNDMTFGEGTSSRAPLRDSAKHSVRELPVNW  1009
             LDDG+DNA+YVKFGHGSAQHVRAGFRLGSH+DM FG GTSSR  LR+SAKHSVRELPVNW
Sbjct  901   LDDGQDNASYVKFGHGSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNW  960

Query  1010  WVQPSVIRTFSSRGDMRVGTSTAGSGMTFSPSQNGTSLDLQAGLEARVRENITLGVQAGY  1069
             WVQPSVIRTFSSRGDM +GT++AGS MTFSPSQNGTSLDLQAGLEARVRENITLGVQA+Y
Sbjct  961   WVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQASY  1020

Query  1070  AHSINGSSAEGYNSQATLNVTF  1091
             AHSINGSSAEGYNSQATLNVTF
Sbjct  1021  AHSINGSSAEGYNSQATLNVTF  1042

17) i14_1166 in NC_017652


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score = 1419 bits (5386),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 930/1042 (90%), Positives = 994/1042 (96%), Gaps = 1/1042 (0%)

Query  51    MLMKRHLNTSYRLVWNHITGAFVVASELarargkragvavalslaaatslpalaaDSVVP  110
             MLMKRHLNT YRLVWNHITGAFVVASELARA+GKR+GVAVALSLAA TSLP LAAD VV 
Sbjct  1     MLMKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVH  60

Query  111   AGETVNGGTLINHDRQFVSGTADGMTVSTGLELGADSDNNTGGQQIARGGTARNTRVTAN  170
             +GETVNGGTL+NHD QFVSGTADG+TVSTGLELG+DSD+NTGGQ I  GGT+RNT VTAN
Sbjct  61    PGETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTAN  120

Query  171   GLQDVMAGGSTSDTVISTGGGQNLRGKASGTVLNG-GDQWIHAGGRASGTVINQDGYQTI  229
             G Q V AGG++SDTVI  GGGQ+L G A  T L+  G+QW+H+GG+A+GT+INQDGYQTI
Sbjct  121   GRQIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTI  180

Query  230   KHGGLVTGTIVNTGAEGGPDSENVSTGQMVGGIAESTTINKNGRQVIWSSGIARDTLIYT  289
             KHGGL TGTIVNTGAEGGP+SENVS+GQMVGG AESTTINKNGRQVIWSSG+ARDTLIY+
Sbjct  181   KHGGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYA  240

Query  290   GGDQTVHGEAHNTRLEGGNQYVHKYGLALNTVINEGGWQVVKAGGTAGNTTINQNGELRV  349
             GGDQTVHGEAHNTRLEGGNQYVH+ G A +T+IN +GWQV+K GGTA++TTINQ+G L+V
Sbjct  241   GGDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQV  300

Query  350   HAGGEASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLSGHTA  409
             +AGG ASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVL+GHTA
Sbjct  301   NAGGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTA  360

Query  410   TRTLVDDGGTLDVRNGGTATAVSMGNGGVLLADSGAAVSGTRSDGTAFRIGGGQADALML  469
             T T VDDGGTLDVRNGGTAT+VSMGNGGVLLADSGAAVSGTRSDG AF IGGGQADALML
Sbjct  361   TNTRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALML  420

Query  470   EKGSSFTLNAGDTATDTTVNGGLFTARGGSLAGTTTLNNGATFTLAGKTVNNDTLTIREG  529
             EKGSSFTLNAGDTATDTTVNGGLFTARGG+LAGTTTLNNGA +TL+GKTVNNDTLTIREG
Sbjct  421   EKGSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREG  480

Query  530   DALLQGGALTGNGRVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDIIAHRGTA  589
             DALLQGGALTGNG VEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTD+IA+RGTA
Sbjct  481   DALLQGGALTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTA  540

Query  590   LKLTGSTVLNGAIDPTNVTLTSGATWNIPDNATVQSVVDDLSHAGQIHFTSARTGKFVPT  649
             LKLTGSTVLNGAIDPTNVTL+SGATWNIPDNATVQSVVDDLSHAGQIHFTS+RTGKFVP+
Sbjct  541   LKLTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPA  600

Query  650   TLQVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSGTGLATTGK  709
             TL+VKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNS++GLAT+GK
Sbjct  601   TLKVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGK  660

Query  710   GIQVVEAINGATTEEGAFVQGNMLQAGAFNYTLNRDSDESWYLRSEERYRAEVPLYASML  769
             GIQVVEAINGATTEEGAF+QGN LQAGAFNY+LNRDSDESWYLRSE+ YRAEVPLYASML
Sbjct  661   GIQVVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASML  720

Query  770   TQAMDYDRILAGSRSHQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVR  829
             TQAMDYDRILAGSRSHQTGV+GENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVR
Sbjct  721   TQAMDYDRILAGSRSHQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVR  780

Query  830   LEGDLLRTEVAGMSLTTGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYMNLTHTSSG  889
             LEGDLLRTEVAGMS+T+GVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGY+NL H +SG
Sbjct  781   LEGDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASG  840

Query  890   LWADIVAQGTRHSMKASSDNNDFRARGRGWLGSLETGLPFSITDNLMLEPRLQYTWQGLS  949
             LWADIVAQGTRHSMKASSDNNDFR RG+GWLGSLETGLPFSITDNLMLEP+LQYTWQGLS
Sbjct  841   LWADIVAQGTRHSMKASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLS  900

Query  950   LDDGKDNAGYVKFGHGSAQHVRAGFRLGSHNDMTFGEGTSSRAPLRDSAKHSVRELPVNW  1009
             LDDG+DNA+YVKFGHGSAQHVRAGFRLGSH+DM FG GTSSR  LR+SAKHSVRELPVNW
Sbjct  901   LDDGQDNASYVKFGHGSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNW  960

Query  1010  WVQPSVIRTFSSRGDMRVGTSTAGSGMTFSPSQNGTSLDLQAGLEARVRENITLGVQAGY  1069
             WVQPSVIRTFSSRGDM +GT++AGS MTFSPSQNGTSLDLQAGLEARVRENITLGVQA+Y
Sbjct  961   WVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQASY  1020

Query  1070  AHSINGSSAEGYNSQATLNVTF  1091
             AHSINGSSAEGYNSQATLNVTF
Sbjct  1021  AHSINGSSAEGYNSQATLNVTF  1042

18) i02_1166 in NC_017651


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score = 1419 bits (5386),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 930/1042 (90%), Positives = 994/1042 (96%), Gaps = 1/1042 (0%)

Query  51    MLMKRHLNTSYRLVWNHITGAFVVASELarargkragvavalslaaatslpalaaDSVVP  110
             MLMKRHLNT YRLVWNHITGAFVVASELARA+GKR+GVAVALSLAA TSLP LAAD VV 
Sbjct  1     MLMKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVH  60

Query  111   AGETVNGGTLINHDRQFVSGTADGMTVSTGLELGADSDNNTGGQQIARGGTARNTRVTAN  170
             +GETVNGGTL+NHD QFVSGTADG+TVSTGLELG+DSD+NTGGQ I  GGT+RNT VTAN
Sbjct  61    PGETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTAN  120

Query  171   GLQDVMAGGSTSDTVISTGGGQNLRGKASGTVLNG-GDQWIHAGGRASGTVINQDGYQTI  229
             G Q V AGG++SDTVI  GGGQ+L G A  T L+  G+QW+H+GG+A+GT+INQDGYQTI
Sbjct  121   GRQIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTI  180

Query  230   KHGGLVTGTIVNTGAEGGPDSENVSTGQMVGGIAESTTINKNGRQVIWSSGIARDTLIYT  289
             KHGGL TGTIVNTGAEGGP+SENVS+GQMVGG AESTTINKNGRQVIWSSG+ARDTLIY+
Sbjct  181   KHGGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYA  240

Query  290   GGDQTVHGEAHNTRLEGGNQYVHKYGLALNTVINEGGWQVVKAGGTAGNTTINQNGELRV  349
             GGDQTVHGEAHNTRLEGGNQYVH+ G A +T+IN +GWQV+K GGTA++TTINQ+G L+V
Sbjct  241   GGDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQV  300

Query  350   HAGGEASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLSGHTA  409
             +AGG ASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVL+GHTA
Sbjct  301   NAGGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTA  360

Query  410   TRTLVDDGGTLDVRNGGTATAVSMGNGGVLLADSGAAVSGTRSDGTAFRIGGGQADALML  469
             T T VDDGGTLDVRNGGTAT+VSMGNGGVLLADSGAAVSGTRSDG AF IGGGQADALML
Sbjct  361   TNTRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALML  420

Query  470   EKGSSFTLNAGDTATDTTVNGGLFTARGGSLAGTTTLNNGATFTLAGKTVNNDTLTIREG  529
             EKGSSFTLNAGDTATDTTVNGGLFTARGG+LAGTTTLNNGA +TL+GKTVNNDTLTIREG
Sbjct  421   EKGSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREG  480

Query  530   DALLQGGALTGNGRVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDIIAHRGTA  589
             DALLQGGALTGNG VEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTD+IA+RGTA
Sbjct  481   DALLQGGALTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTA  540

Query  590   LKLTGSTVLNGAIDPTNVTLTSGATWNIPDNATVQSVVDDLSHAGQIHFTSARTGKFVPT  649
             LKLTGSTVLNGAIDPTNVTL+SGATWNIPDNATVQSVVDDLSHAGQIHFTS+RTGKFVP+
Sbjct  541   LKLTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPA  600

Query  650   TLQVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSGTGLATTGK  709
             TL+VKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNS++GLAT+GK
Sbjct  601   TLKVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGK  660

Query  710   GIQVVEAINGATTEEGAFVQGNMLQAGAFNYTLNRDSDESWYLRSEERYRAEVPLYASML  769
             GIQVVEAINGATTEEGAF+QGN LQAGAFNY+LNRDSDESWYLRSE+ YRAEVPLYASML
Sbjct  661   GIQVVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASML  720

Query  770   TQAMDYDRILAGSRSHQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVR  829
             TQAMDYDRILAGSRSHQTGV+GENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVR
Sbjct  721   TQAMDYDRILAGSRSHQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVR  780

Query  830   LEGDLLRTEVAGMSLTTGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYMNLTHTSSG  889
             LEGDLLRTEVAGMS+T+GVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGY+NL H +SG
Sbjct  781   LEGDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASG  840

Query  890   LWADIVAQGTRHSMKASSDNNDFRARGRGWLGSLETGLPFSITDNLMLEPRLQYTWQGLS  949
             LWADIVAQGTRHSMKASSDNNDFR RG+GWLGSLETGLPFSITDNLMLEP+LQYTWQGLS
Sbjct  841   LWADIVAQGTRHSMKASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLS  900

Query  950   LDDGKDNAGYVKFGHGSAQHVRAGFRLGSHNDMTFGEGTSSRAPLRDSAKHSVRELPVNW  1009
             LDDG+DNA+YVKFGHGSAQHVRAGFRLGSH+DM FG GTSSR  LR+SAKHSVRELPVNW
Sbjct  901   LDDGQDNASYVKFGHGSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNW  960

Query  1010  WVQPSVIRTFSSRGDMRVGTSTAGSGMTFSPSQNGTSLDLQAGLEARVRENITLGVQAGY  1069
             WVQPSVIRTFSSRGDM +GT++AGS MTFSPSQNGTSLDLQAGLEARVRENITLGVQA+Y
Sbjct  961   WVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQASY  1020

Query  1070  AHSINGSSAEGYNSQATLNVTF  1091
             AHSINGSSAEGYNSQATLNVTF
Sbjct  1021  AHSINGSSAEGYNSQATLNVTF  1042

19) flu1 in NC_017626


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score = 1388 bits (5268),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 922/1040 (89%), Positives = 992/1040 (96%), Gaps = 1/1040 (0%)

Query  1     MKRHLNTCYRLVWNHITGAFVVASELARARGKRGGvavalslaavtslpvlaaDIVVHPG  60
             MKRHLNTCYRLVWNHITGAFVVASELARA+GKRGGVAVALSLAAVTSLPVLAADIVVHPG
Sbjct  3     MKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVHPG  62

Query  61    ETVNGGTLANHDNQIVFGTTNGMTISTGLEYGPDNEANTGGQWVQDGGTANKTTVTSGGL  120
             ETVNGGTL NHDNQ+V GT++G+T+STGLE GPD++ NTGGQW++ GGT+ +TTVT+ G 
Sbjct  63    ETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTANGR  122

Query  121   QRVNPGGSVSDTVISAGGGQSLQGRAVNTTLNG-GEQWMHEGAIATGTVINDKGWQVVKP  179
             Q V++GG+ SDTVI  GGGQSL+G AVNTTL+  GEQW+H G+ A+GT+IN+ G Q +K 
Sbjct  123   QIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTIKH  182

Query  180   GTVATDTVVNTGAEGGPDAENGDTGQFVRGDAVRTTINKNGRQIVRAEGTANTTVVYAGG  239
             G +AT+T+VNTGAEGGP++EN  +GQ V G A  TTINKNGRQ++++ G A  T++YAGG
Sbjct  183   GGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAGG  242

Query  240   DQTVHGHALDTTLNGGYQYVHNGGTASDTVVNSDGWQIVKNGGVAGNTTVNQKGRLQVDA  299
             DQTVHG+A +T L+GG QYVHNGGTA++T++N DGWQ++K+GG A++TT+NQKG+LQV+A
Sbjct  243   DQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQVNA  302

Query  300   GGTATNVTLKQGGALVTSTAATVTGINRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN  359
             GG A++VT + GGALVTSTAATVTG NRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN
Sbjct  303   GGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN  362

Query  360   TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEK  419
             TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEK
Sbjct  363   TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEK  422

Query  420   GSSFTLNAGDTATDTTVNgglftarggtlagtttlnngaILTLSGKTVNNDTLTIREGDA  479
             GSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREGDA
Sbjct  423   GSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREGDA  482

Query  480   LLQGGSLTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTALK  539
             LLQGG+LTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTALK
Sbjct  483   LLQGGALTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTALK  542

Query  540   LTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPATL  599
             LTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPATL
Sbjct  543   LTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPATL  602

Query  600   KVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKGI  659
             KVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKGI
Sbjct  603   KVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKGI  662

Query  660   QVVEAINGATTEEGAFVQGNRLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLTQ  719
             QVVEAINGATTEEGAF+QGN+LQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLTQ
Sbjct  663   QVVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLTQ  722

Query  720   AMDYDRILAGSRSHQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLE  779
             AMDYDRILAGSRSHQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLE
Sbjct  723   AMDYDRILAGSRSHQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLE  782

Query  780   GDLLRTEVAGMSLTTGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLTHTSSGLW  839
             GDLLRTEVAGMS+T+GVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNL H +SGLW
Sbjct  783   GDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASGLW  842

Query  840   ADIVAQGTRHSMKASSDNNDFRARGWGWLGSLETGLPFSITDNLMLEPQLHYTWQGLSLD  899
             ADIVAQGTRHSMKASSDNNDFR RGWGWLGSLETGLPFSITDNLMLEPQL+YTWQGLSLD
Sbjct  843   ADIVAQGTRHSMKASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLD  902

Query  900   DGQDNAGYVKFGHGSAQHVRAGFRLGSHNDMTFGEGTSSRDTLRDSTKHGVSELPVNWWV  959
             DGQDNA+YVKFGHGSAQHVRAGFRLGSH+DM FG GTSSRDTLR+S+KH+V ELPVNWWV
Sbjct  903   DGQDNASYVKFGHGSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNWWV  962

Query  960   QPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQAGYAH  1019
             QPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQA+YAH
Sbjct  963   QPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQASYAH  1022

Query  1020  SVSGSSAEGYNGQATLNVTF  1039
             S++GSSAEGYN+QATLNVTF
Sbjct  1023  SINGSSAEGYNSQATLNVTF  1042

20) flu in NC_017638


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score = 1382 bits (5243),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 916/1042 (88%), Positives = 990/1042 (96%), Gaps = 1/1042 (0%)

Query  51    KLMKRHLNTCYRLVWNHMTGAFVVASELARARGKRGGvavalslaavtslpvlaaDIVVH  110
              LMKRHLNTCYRLVWNH+TGAFVVASELARA+GKRGGVAVALSLAAVTSLPVLAADIVVH
Sbjct  1     MLMKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVH  60

Query  111   PGETVNGGTLANHDNQIVFGTTNGMTISTGLEYGPDNEANTGGQWVQDGGTANKTTVTSG  170
             PGETVNGGTL NHDNQ+V GT++G+T+STGLE GPD++ NTGGQW++ GGT+ +TTVT+ 
Sbjct  61    PGETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTAN  120

Query  171   GLQRVNPGGSVSDTVISAGGGQSLQGRAVNTTLNG-GEQWMHEGAIATGTVINDKGWQVV  229
             G Q V++GG+ SDTVI  GGGQSL+G AVNTTL+  GEQW+H G+ A+GT+IN+ G Q +
Sbjct  121   GRQIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTI  180

Query  230   KPGTVATDTVVNTGAEGGPDAENGDTGQFVRGDAVRTTINKNGRQIVRAEGTANTTVVYA  289
             K G +AT+T+VNTGAEGGP++EN  +GQ V G A  TTINKNGRQ++++ G A  T++YA
Sbjct  181   KHGGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYA  240

Query  290   GGDQTVHGHALDTTLNGGYQYVHNGGTASDTVVNSDGWQIVKNGGVAGNTTVNQKGRLQV  349
             GGDQTVHG+A +T L+GG QYVHNGGTA++T++N DGWQ++K+GG A++TT+NQKG+LQV
Sbjct  241   GGDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQV  300

Query  350   DAGGTATNVTLKQGGALVTSTAATVTGINRLGAFSVVEGKADNVVLENGGRLDVLTGHTA  409
             +AGG A++VT + GGALVTSTAATVTG NRLGAFSVVEGKADNVVLENGGRLDVLTGHTA
Sbjct  301   NAGGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTA  360

Query  410   TNTRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALML  469
             TNTRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALML
Sbjct  361   TNTRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALML  420

Query  470   EKGSSFTLNAGDTATDTTVNgglftarggtlagtttlnngaILTLSGKTVNNDTLTIREG  529
             EKGSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREG
Sbjct  421   EKGSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREG  480

Query  530   DALLQGGSLTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTA  589
             DALLQGG+LTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTA
Sbjct  481   DALLQGGALTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTA  540

Query  590   LKLTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPA  649
             LKLTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPA
Sbjct  541   LKLTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPA  600

Query  650   TLKVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGK  709
             TLKVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGK
Sbjct  601   TLKVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGK  660

Query  710   GIQVVEAINGATTEEGAFVQGNRLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASML  769
             GIQVVEAINGATTEEGAF+QGN+LQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASML
Sbjct  661   GIQVVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASML  720

Query  770   TQAMDYDRIVAGSRSHQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVR  829
             TQAMDYDRI+AGSRSHQTGV+GENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVR
Sbjct  721   TQAMDYDRILAGSRSHQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVR  780

Query  830   LEGDLMRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLVHTSSG  889
             LEGDL+RTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNL+H +SG
Sbjct  781   LEGDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASG  840

Query  890   LWADIVAQGTRHSMKASSDNNDFRARGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLS  949
             LWADIVAQGTRHSMKASSDNNDFR RGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLS
Sbjct  841   LWADIVAQGTRHSMKASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLS  900

Query  950   LDDGKDNAGYVKFGHGSAQHVRAGFRLGSHNDMTFGEGTSSRAPLRDSAKHSVSELPVNW  1009
             LDDG+DNA+YVKFGHGSAQHVRAGFRLGSH+DM FG GTSSR  LR+SAKHSV ELPVNW
Sbjct  901   LDDGQDNASYVKFGHGSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNW  960

Query  1010  WVQPSVIRTFSSRGDMRVGTSTAGSGMTFSPSQNGTSLDLQAGLEARVRENITLGVQAGY  1069
             WVQPSVIRTFSSRGDM +GT++AGS MTFSPSQNGTSLDLQAGLEARVRENITLGVQA+Y
Sbjct  961   WVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQASY  1020

Query  1070  AHSVSGSSAEGYNGQATLNVTF  1091
             AHS++GSSAEGYN+QATLNVTF
Sbjct  1021  AHSINGSSAEGYNSQATLNVTF  1042

21) flu in NC_012759


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score = 1381 bits (5242),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 915/1040 (88%), Positives = 989/1040 (96%), Gaps = 1/1040 (0%)

Query  1     MKRHLNTCYRLVWNHMTGAFVVASELARARGKRGGvavalslaavtslpvlaaDIVVHPG  60
             MKRHLNTCYRLVWNH+TGAFVVASELARA+GKRGGVAVALSLAAVTSLPVLAADIVVHPG
Sbjct  3     MKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVHPG  62

Query  61    ETVNGGTLANHDNQIVFGTTNGMTISTGLEYGPDNEANTGGQWVQDGGTANKTTVTSGGL  120
             ETVNGGTL NHDNQ+V GT++G+T+STGLE GPD++ NTGGQW++ GGT+ +TTVT+ G 
Sbjct  63    ETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTANGR  122

Query  121   QRVNPGGSVSDTVISAGGGQSLQGRAVNTTLNG-GEQWMHEGAIATGTVINDKGWQVVKP  179
             Q V++GG+ SDTVI  GGGQSL+G AVNTTL+  GEQW+H G+ A+GT+IN+ G Q +K 
Sbjct  123   QIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTIKH  182

Query  180   GTVATDTVVNTGAEGGPDAENGDTGQFVRGDAVRTTINKNGRQIVRAEGTANTTVVYAGG  239
             G +AT+T+VNTGAEGGP++EN  +GQ V G A  TTINKNGRQ++++ G A  T++YAGG
Sbjct  183   GGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAGG  242

Query  240   DQTVHGHALDTTLNGGYQYVHNGGTASDTVVNSDGWQIVKNGGVAGNTTVNQKGRLQVDA  299
             DQTVHG+A +T L+GG QYVHNGGTA++T++N DGWQ++K+GG A++TT+NQKG+LQV+A
Sbjct  243   DQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQVNA  302

Query  300   GGTATNVTLKQGGALVTSTAATVTGINRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN  359
             GG A++VT + GGALVTSTAATVTG NRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN
Sbjct  303   GGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN  362

Query  360   TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEK  419
             TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEK
Sbjct  363   TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEK  422

Query  420   GSSFTLNAGDTATDTTVNgglftarggtlagtttlnngaILTLSGKTVNNDTLTIREGDA  479
             GSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREGDA
Sbjct  423   GSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREGDA  482

Query  480   LLQGGSLTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTALK  539
             LLQGG+LTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTALK
Sbjct  483   LLQGGALTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTALK  542

Query  540   LTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPATL  599
             LTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPATL
Sbjct  543   LTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPATL  602

Query  600   KVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKGI  659
             KVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKGI
Sbjct  603   KVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKGI  662

Query  660   QVVEAINGATTEEGAFVQGNRLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLTQ  719
             QVVEAINGATTEEGAF+QGN+LQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLTQ
Sbjct  663   QVVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLTQ  722

Query  720   AMDYDRIVAGSRSHQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLE  779
             AMDYDRI+AGSRSHQTGV+GENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLE
Sbjct  723   AMDYDRILAGSRSHQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLE  782

Query  780   GDLMRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLVHTSSGLW  839
             GDL+RTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNL+H +SGLW
Sbjct  783   GDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASGLW  842

Query  840   ADIVAQGTRHSMKASSDNNDFRARGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLD  899
             ADIVAQGTRHSMKASSDNNDFR RGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLD
Sbjct  843   ADIVAQGTRHSMKASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLD  902

Query  900   DGKDNAGYVKFGHGSAQHVRAGFRLGSHNDMTFGEGTSSRAPLRDSAKHSVSELPVNWWV  959
             DG+DNA+YVKFGHGSAQHVRAGFRLGSH+DM FG GTSSR  LR+SAKHSV ELPVNWWV
Sbjct  903   DGQDNASYVKFGHGSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNWWV  962

Query  960   QPSVIRTFSSRGDMRVGTSTAGSGMTFSPSQNGTSLDLQAGLEARVRENITLGVQAGYAH  1019
             QPSVIRTFSSRGDM +GT++AGS MTFSPSQNGTSLDLQAGLEARVRENITLGVQA+YAH
Sbjct  963   QPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQASYAH  1022

Query  1020  SVSGSSAEGYNGQATLNVTF  1039
             S++GSSAEGYN+QATLNVTF
Sbjct  1023  SINGSSAEGYNSQATLNVTF  1042

22) EcDH1_1657 in NC_017625


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score = 1381 bits (5242),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 915/1040 (88%), Positives = 989/1040 (96%), Gaps = 1/1040 (0%)

Query  1     MKRHLNTCYRLVWNHMTGAFVVASELARARGKRGGvavalslaavtslpvlaaDIVVHPG  60
             MKRHLNTCYRLVWNH+TGAFVVASELARA+GKRGGVAVALSLAAVTSLPVLAADIVVHPG
Sbjct  3     MKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVHPG  62

Query  61    ETVNGGTLANHDNQIVFGTTNGMTISTGLEYGPDNEANTGGQWVQDGGTANKTTVTSGGL  120
             ETVNGGTL NHDNQ+V GT++G+T+STGLE GPD++ NTGGQW++ GGT+ +TTVT+ G 
Sbjct  63    ETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTANGR  122

Query  121   QRVNPGGSVSDTVISAGGGQSLQGRAVNTTLNG-GEQWMHEGAIATGTVINDKGWQVVKP  179
             Q V++GG+ SDTVI  GGGQSL+G AVNTTL+  GEQW+H G+ A+GT+IN+ G Q +K 
Sbjct  123   QIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTIKH  182

Query  180   GTVATDTVVNTGAEGGPDAENGDTGQFVRGDAVRTTINKNGRQIVRAEGTANTTVVYAGG  239
             G +AT+T+VNTGAEGGP++EN  +GQ V G A  TTINKNGRQ++++ G A  T++YAGG
Sbjct  183   GGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAGG  242

Query  240   DQTVHGHALDTTLNGGYQYVHNGGTASDTVVNSDGWQIVKNGGVAGNTTVNQKGRLQVDA  299
             DQTVHG+A +T L+GG QYVHNGGTA++T++N DGWQ++K+GG A++TT+NQKG+LQV+A
Sbjct  243   DQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQVNA  302

Query  300   GGTATNVTLKQGGALVTSTAATVTGINRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN  359
             GG A++VT + GGALVTSTAATVTG NRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN
Sbjct  303   GGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN  362

Query  360   TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEK  419
             TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEK
Sbjct  363   TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEK  422

Query  420   GSSFTLNAGDTATDTTVNgglftarggtlagtttlnngaILTLSGKTVNNDTLTIREGDA  479
             GSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREGDA
Sbjct  423   GSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREGDA  482

Query  480   LLQGGSLTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTALK  539
             LLQGG+LTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTALK
Sbjct  483   LLQGGALTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTALK  542

Query  540   LTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPATL  599
             LTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPATL
Sbjct  543   LTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPATL  602

Query  600   KVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKGI  659
             KVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKGI
Sbjct  603   KVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKGI  662

Query  660   QVVEAINGATTEEGAFVQGNRLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLTQ  719
             QVVEAINGATTEEGAF+QGN+LQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLTQ
Sbjct  663   QVVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLTQ  722

Query  720   AMDYDRIVAGSRSHQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLE  779
             AMDYDRI+AGSRSHQTGV+GENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLE
Sbjct  723   AMDYDRILAGSRSHQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLE  782

Query  780   GDLMRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLVHTSSGLW  839
             GDL+RTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNL+H +SGLW
Sbjct  783   GDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASGLW  842

Query  840   ADIVAQGTRHSMKASSDNNDFRARGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLD  899
             ADIVAQGTRHSMKASSDNNDFR RGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLD
Sbjct  843   ADIVAQGTRHSMKASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLD  902

Query  900   DGKDNAGYVKFGHGSAQHVRAGFRLGSHNDMTFGEGTSSRAPLRDSAKHSVSELPVNWWV  959
             DG+DNA+YVKFGHGSAQHVRAGFRLGSH+DM FG GTSSR  LR+SAKHSV ELPVNWWV
Sbjct  903   DGQDNASYVKFGHGSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNWWV  962

Query  960   QPSVIRTFSSRGDMRVGTSTAGSGMTFSPSQNGTSLDLQAGLEARVRENITLGVQAGYAH  1019
             QPSVIRTFSSRGDM +GT++AGS MTFSPSQNGTSLDLQAGLEARVRENITLGVQA+YAH
Sbjct  963   QPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQASYAH  1022

Query  1020  SVSGSSAEGYNGQATLNVTF  1039
             S++GSSAEGYN+QATLNVTF
Sbjct  1023  SINGSSAEGYNSQATLNVTF  1042

23) flu in NC_010473


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score = 1381 bits (5242),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 915/1040 (88%), Positives = 989/1040 (96%), Gaps = 1/1040 (0%)

Query  1     MKRHLNTCYRLVWNHMTGAFVVASELARARGKRGGvavalslaavtslpvlaaDIVVHPG  60
             MKRHLNTCYRLVWNH+TGAFVVASELARA+GKRGGVAVALSLAAVTSLPVLAADIVVHPG
Sbjct  3     MKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVHPG  62

Query  61    ETVNGGTLANHDNQIVFGTTNGMTISTGLEYGPDNEANTGGQWVQDGGTANKTTVTSGGL  120
             ETVNGGTL NHDNQ+V GT++G+T+STGLE GPD++ NTGGQW++ GGT+ +TTVT+ G 
Sbjct  63    ETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTANGR  122

Query  121   QRVNPGGSVSDTVISAGGGQSLQGRAVNTTLNG-GEQWMHEGAIATGTVINDKGWQVVKP  179
             Q V++GG+ SDTVI  GGGQSL+G AVNTTL+  GEQW+H G+ A+GT+IN+ G Q +K 
Sbjct  123   QIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTIKH  182

Query  180   GTVATDTVVNTGAEGGPDAENGDTGQFVRGDAVRTTINKNGRQIVRAEGTANTTVVYAGG  239
             G +AT+T+VNTGAEGGP++EN  +GQ V G A  TTINKNGRQ++++ G A  T++YAGG
Sbjct  183   GGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAGG  242

Query  240   DQTVHGHALDTTLNGGYQYVHNGGTASDTVVNSDGWQIVKNGGVAGNTTVNQKGRLQVDA  299
             DQTVHG+A +T L+GG QYVHNGGTA++T++N DGWQ++K+GG A++TT+NQKG+LQV+A
Sbjct  243   DQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQVNA  302

Query  300   GGTATNVTLKQGGALVTSTAATVTGINRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN  359
             GG A++VT + GGALVTSTAATVTG NRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN
Sbjct  303   GGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN  362

Query  360   TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEK  419
             TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEK
Sbjct  363   TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEK  422

Query  420   GSSFTLNAGDTATDTTVNgglftarggtlagtttlnngaILTLSGKTVNNDTLTIREGDA  479
             GSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREGDA
Sbjct  423   GSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREGDA  482

Query  480   LLQGGSLTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTALK  539
             LLQGG+LTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTALK
Sbjct  483   LLQGGALTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTALK  542

Query  540   LTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPATL  599
             LTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPATL
Sbjct  543   LTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPATL  602

Query  600   KVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKGI  659
             KVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKGI
Sbjct  603   KVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKGI  662

Query  660   QVVEAINGATTEEGAFVQGNRLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLTQ  719
             QVVEAINGATTEEGAF+QGN+LQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLTQ
Sbjct  663   QVVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLTQ  722

Query  720   AMDYDRIVAGSRSHQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLE  779
             AMDYDRI+AGSRSHQTGV+GENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLE
Sbjct  723   AMDYDRILAGSRSHQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLE  782

Query  780   GDLMRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLVHTSSGLW  839
             GDL+RTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNL+H +SGLW
Sbjct  783   GDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASGLW  842

Query  840   ADIVAQGTRHSMKASSDNNDFRARGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLD  899
             ADIVAQGTRHSMKASSDNNDFR RGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLD
Sbjct  843   ADIVAQGTRHSMKASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLD  902

Query  900   DGKDNAGYVKFGHGSAQHVRAGFRLGSHNDMTFGEGTSSRAPLRDSAKHSVSELPVNWWV  959
             DG+DNA+YVKFGHGSAQHVRAGFRLGSH+DM FG GTSSR  LR+SAKHSV ELPVNWWV
Sbjct  903   DGQDNASYVKFGHGSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNWWV  962

Query  960   QPSVIRTFSSRGDMRVGTSTAGSGMTFSPSQNGTSLDLQAGLEARVRENITLGVQAGYAH  1019
             QPSVIRTFSSRGDM +GT++AGS MTFSPSQNGTSLDLQAGLEARVRENITLGVQA+YAH
Sbjct  963   QPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQASYAH  1022

Query  1020  SVSGSSAEGYNGQATLNVTF  1039
             S++GSSAEGYN+QATLNVTF
Sbjct  1023  SINGSSAEGYNSQATLNVTF  1042

24) flu in NC_000913


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score = 1381 bits (5242),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 915/1040 (88%), Positives = 989/1040 (96%), Gaps = 1/1040 (0%)

Query  1     MKRHLNTCYRLVWNHMTGAFVVASELARARGKRGGvavalslaavtslpvlaaDIVVHPG  60
             MKRHLNTCYRLVWNH+TGAFVVASELARA+GKRGGVAVALSLAAVTSLPVLAADIVVHPG
Sbjct  3     MKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVHPG  62

Query  61    ETVNGGTLANHDNQIVFGTTNGMTISTGLEYGPDNEANTGGQWVQDGGTANKTTVTSGGL  120
             ETVNGGTL NHDNQ+V GT++G+T+STGLE GPD++ NTGGQW++ GGT+ +TTVT+ G 
Sbjct  63    ETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTANGR  122

Query  121   QRVNPGGSVSDTVISAGGGQSLQGRAVNTTLNG-GEQWMHEGAIATGTVINDKGWQVVKP  179
             Q V++GG+ SDTVI  GGGQSL+G AVNTTL+  GEQW+H G+ A+GT+IN+ G Q +K 
Sbjct  123   QIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTIKH  182

Query  180   GTVATDTVVNTGAEGGPDAENGDTGQFVRGDAVRTTINKNGRQIVRAEGTANTTVVYAGG  239
             G +AT+T+VNTGAEGGP++EN  +GQ V G A  TTINKNGRQ++++ G A  T++YAGG
Sbjct  183   GGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAGG  242

Query  240   DQTVHGHALDTTLNGGYQYVHNGGTASDTVVNSDGWQIVKNGGVAGNTTVNQKGRLQVDA  299
             DQTVHG+A +T L+GG QYVHNGGTA++T++N DGWQ++K+GG A++TT+NQKG+LQV+A
Sbjct  243   DQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQVNA  302

Query  300   GGTATNVTLKQGGALVTSTAATVTGINRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN  359
             GG A++VT + GGALVTSTAATVTG NRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN
Sbjct  303   GGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN  362

Query  360   TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEK  419
             TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEK
Sbjct  363   TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEK  422

Query  420   GSSFTLNAGDTATDTTVNgglftarggtlagtttlnngaILTLSGKTVNNDTLTIREGDA  479
             GSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREGDA
Sbjct  423   GSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREGDA  482

Query  480   LLQGGSLTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTALK  539
             LLQGG+LTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTALK
Sbjct  483   LLQGGALTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTALK  542

Query  540   LTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPATL  599
             LTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPATL
Sbjct  543   LTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPATL  602

Query  600   KVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKGI  659
             KVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKGI
Sbjct  603   KVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKGI  662

Query  660   QVVEAINGATTEEGAFVQGNRLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLTQ  719
             QVVEAINGATTEEGAF+QGN+LQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLTQ
Sbjct  663   QVVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLTQ  722

Query  720   AMDYDRIVAGSRSHQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLE  779
             AMDYDRI+AGSRSHQTGV+GENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLE
Sbjct  723   AMDYDRILAGSRSHQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLE  782

Query  780   GDLMRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLVHTSSGLW  839
             GDL+RTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNL+H +SGLW
Sbjct  783   GDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASGLW  842

Query  840   ADIVAQGTRHSMKASSDNNDFRARGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLD  899
             ADIVAQGTRHSMKASSDNNDFR RGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLD
Sbjct  843   ADIVAQGTRHSMKASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLD  902

Query  900   DGKDNAGYVKFGHGSAQHVRAGFRLGSHNDMTFGEGTSSRAPLRDSAKHSVSELPVNWWV  959
             DG+DNA+YVKFGHGSAQHVRAGFRLGSH+DM FG GTSSR  LR+SAKHSV ELPVNWWV
Sbjct  903   DGQDNASYVKFGHGSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNWWV  962

Query  960   QPSVIRTFSSRGDMRVGTSTAGSGMTFSPSQNGTSLDLQAGLEARVRENITLGVQAGYAH  1019
             QPSVIRTFSSRGDM +GT++AGS MTFSPSQNGTSLDLQAGLEARVRENITLGVQA+YAH
Sbjct  963   QPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQASYAH  1022

Query  1020  SVSGSSAEGYNGQATLNVTF  1039
             S++GSSAEGYN+QATLNVTF
Sbjct  1023  SINGSSAEGYNSQATLNVTF  1042

25) flu in NC_007779


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score = 1381 bits (5242),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 915/1040 (88%), Positives = 989/1040 (96%), Gaps = 1/1040 (0%)

Query  1     MKRHLNTCYRLVWNHMTGAFVVASELARARGKRGGvavalslaavtslpvlaaDIVVHPG  60
             MKRHLNTCYRLVWNH+TGAFVVASELARA+GKRGGVAVALSLAAVTSLPVLAADIVVHPG
Sbjct  3     MKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVHPG  62

Query  61    ETVNGGTLANHDNQIVFGTTNGMTISTGLEYGPDNEANTGGQWVQDGGTANKTTVTSGGL  120
             ETVNGGTL NHDNQ+V GT++G+T+STGLE GPD++ NTGGQW++ GGT+ +TTVT+ G 
Sbjct  63    ETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTANGR  122

Query  121   QRVNPGGSVSDTVISAGGGQSLQGRAVNTTLNG-GEQWMHEGAIATGTVINDKGWQVVKP  179
             Q V++GG+ SDTVI  GGGQSL+G AVNTTL+  GEQW+H G+ A+GT+IN+ G Q +K 
Sbjct  123   QIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTIKH  182

Query  180   GTVATDTVVNTGAEGGPDAENGDTGQFVRGDAVRTTINKNGRQIVRAEGTANTTVVYAGG  239
             G +AT+T+VNTGAEGGP++EN  +GQ V G A  TTINKNGRQ++++ G A  T++YAGG
Sbjct  183   GGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAGG  242

Query  240   DQTVHGHALDTTLNGGYQYVHNGGTASDTVVNSDGWQIVKNGGVAGNTTVNQKGRLQVDA  299
             DQTVHG+A +T L+GG QYVHNGGTA++T++N DGWQ++K+GG A++TT+NQKG+LQV+A
Sbjct  243   DQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQVNA  302

Query  300   GGTATNVTLKQGGALVTSTAATVTGINRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN  359
             GG A++VT + GGALVTSTAATVTG NRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN
Sbjct  303   GGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN  362

Query  360   TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEK  419
             TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEK
Sbjct  363   TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEK  422

Query  420   GSSFTLNAGDTATDTTVNgglftarggtlagtttlnngaILTLSGKTVNNDTLTIREGDA  479
             GSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREGDA
Sbjct  423   GSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREGDA  482

Query  480   LLQGGSLTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTALK  539
             LLQGG+LTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTALK
Sbjct  483   LLQGGALTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTALK  542

Query  540   LTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPATL  599
             LTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPATL
Sbjct  543   LTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPATL  602

Query  600   KVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKGI  659
             KVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKGI
Sbjct  603   KVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKGI  662

Query  660   QVVEAINGATTEEGAFVQGNRLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLTQ  719
             QVVEAINGATTEEGAF+QGN+LQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLTQ
Sbjct  663   QVVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLTQ  722

Query  720   AMDYDRIVAGSRSHQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLE  779
             AMDYDRI+AGSRSHQTGV+GENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLE
Sbjct  723   AMDYDRILAGSRSHQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLE  782

Query  780   GDLMRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLVHTSSGLW  839
             GDL+RTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNL+H +SGLW
Sbjct  783   GDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASGLW  842

Query  840   ADIVAQGTRHSMKASSDNNDFRARGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLD  899
             ADIVAQGTRHSMKASSDNNDFR RGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLD
Sbjct  843   ADIVAQGTRHSMKASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLD  902

Query  900   DGKDNAGYVKFGHGSAQHVRAGFRLGSHNDMTFGEGTSSRAPLRDSAKHSVSELPVNWWV  959
             DG+DNA+YVKFGHGSAQHVRAGFRLGSH+DM FG GTSSR  LR+SAKHSV ELPVNWWV
Sbjct  903   DGQDNASYVKFGHGSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNWWV  962

Query  960   QPSVIRTFSSRGDMRVGTSTAGSGMTFSPSQNGTSLDLQAGLEARVRENITLGVQAGYAH  1019
             QPSVIRTFSSRGDM +GT++AGS MTFSPSQNGTSLDLQAGLEARVRENITLGVQA+YAH
Sbjct  963   QPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQASYAH  1022

Query  1020  SVSGSSAEGYNGQATLNVTF  1039
             S++GSSAEGYN+QATLNVTF
Sbjct  1023  SINGSSAEGYNSQATLNVTF  1042

26) ECO26_2901 in NC_013361


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score = 1379 bits (5233),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 916/1040 (89%), Positives = 989/1040 (96%), Gaps = 1/1040 (0%)

Query  1     MKRHLNTCYRLVWNHMTGAFVVASELARARGKRGGvavalslaavtslpvlaaDIVVHPG  60
             MKRHLNTCYRLVWNH+TGAFVVASELARA+GKRGGVAVALSLAAVTSLPVLAADIVVHPG
Sbjct  3     MKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVHPG  62

Query  61    ETVNGGTLANHDNQIVFGTTNGMTISTGLEYGPDNEANTGGQWVQDGGTANKTTVTSGGL  120
             ETVNGGTL NHDNQ+V GT++G+T+STGLE GPD++ NTGGQW++ GGT+ +TTVT+ G 
Sbjct  63    ETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTANGR  122

Query  121   QRVNPGGSVSDTVISAGGGQSLQGRAVNTTLNG-GEQWMHEGAIATGTVINDKGWQVVKP  179
             Q V++GG+ SDTVI  GGGQSL+G AVNTTL+  GEQW+H G+ A+GT+IN+ G Q +K 
Sbjct  123   QIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTIKH  182

Query  180   GTVATDTVVNTGAEGGPDAENGDTGQFVRGDAVRTTINKNGRQIVRTEGTANTTVVYAGG  239
             G +AT+T+VNTGAEGGP++EN  +GQ V G A  TTINKNGRQ++++ G A  T++YAGG
Sbjct  183   GGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAGG  242

Query  240   DQTVHGHALDTTLNGGYQYVHNGGTASDTVVNSDGWQIVKNGGVAGNTTVNQKGRLQVDA  299
             DQTVHG+A +T L+GG QYVHNGGTA++T++N DGWQ++K+GG A++TT+NQKG+LQV+A
Sbjct  243   DQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQVNA  302

Query  300   GGTATNVTLKQGGALVTSTAATVTGINRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN  359
             GG A++VT + GGALVTSTAATVTG NRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN
Sbjct  303   GGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN  362

Query  360   TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEK  419
             TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEK
Sbjct  363   TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEK  422

Query  420   GSSFTLNAGDTATDTTVNgglftarggtlagtttlnngaILTLSGKTVNNDTLTIREGDA  479
             GSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREGDA
Sbjct  423   GSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREGDA  482

Query  480   LLQGGSLTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTALK  539
             LLQGG+LTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTALK
Sbjct  483   LLQGGALTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTALK  542

Query  540   LTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPATL  599
             LTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPATL
Sbjct  543   LTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPATL  602

Query  600   KVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKGI  659
             KVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKGI
Sbjct  603   KVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKGI  662

Query  660   QVVEAINGATTEEGAFVQGNRLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLTQ  719
             QVVEAINGATTEEGAF+QGN+LQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLTQ
Sbjct  663   QVVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLTQ  722

Query  720   AMDYDRIVAGSRSHQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLE  779
             AMDYDRI+AGSRSHQTGV+GENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLE
Sbjct  723   AMDYDRILAGSRSHQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLE  782

Query  780   GDLMRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASGLW  839
             GDL+RTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASGLW
Sbjct  783   GDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASGLW  842

Query  840   ADIVALGTRHSMKASTDNNDFRARGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLD  899
             ADIVA GTRHSMKAS+DNNDFR RGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLD
Sbjct  843   ADIVAQGTRHSMKASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLD  902

Query  900   DGKDNAGYVKFGHGSAQHVRAGFRLGSHNDMTFGEGTSSRAPLRDSAKHSVSELPVNWWV  959
             DG+DNA+YVKFGHGSAQHVRAGFRLGSH+DM FG GTSSR  LR+SAKHSV ELPVNWWV
Sbjct  903   DGQDNASYVKFGHGSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNWWV  962

Query  960   QPSVIRTFSSRGDMRVGTSTAGSGMTFSPSQNGTSLDLQAGLEARVRENITLGVQAGYAH  1019
             QPSVIRTFSSRGDM +GT++AGS MTFSPSQNGTSLDLQAGLEARVRENITLGVQA+YAH
Sbjct  963   QPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQASYAH  1022

Query  1020  SVSGSSAEGYNGQATLNVTF  1039
             S++GSSAEGYN+QATLNVTF
Sbjct  1023  SINGSSAEGYNSQATLNVTF  1042

27) ECO26_5486 in NC_013361


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score = 1375 bits (5217),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 915/1040 (88%), Positives = 988/1040 (95%), Gaps = 1/1040 (0%)

Query  1     MKRHLNTSYRLVWNHMTGAFVVASELARARGKRGGvavalslaavtslpvlaaDIVVHPG  60
             MKRHLNT YRLVWNH+TGAFVVASELARA+GKRGGVAVALSLAAVTSLPVLAADIVVHPG
Sbjct  3     MKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVHPG  62

Query  61    ETVNGGTLANHDNQIVFGTTNGMTISTGLEYGPDNEANTGGQWVQDGGTANKTTVTSGGL  120
             ETVNGGTL NHDNQ+V GT++G+T+STGLE GPD++ NTGGQW++ GGT+ +TTVT+ G 
Sbjct  63    ETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTANGR  122

Query  121   QRVNPGGSVSDTVISAGGGQSLQGRAVNTTLNG-GEQWMHEGAIATGTVINDKGWQVVKP  179
             Q V++GG+ SDTVI  GGGQSL+G AVNTTL+  GEQW+H G+ A+GT+IN+ G Q +K 
Sbjct  123   QIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTIKH  182

Query  180   GTVATDTVVNTGAEGGPDAENGDTGQFVRGDAVRTTINKNGRQIVRTEGTANTTVVYAGG  239
             G +AT+T+VNTGAEGGP++EN  +GQ V G A  TTINKNGRQ++++ G A  T++YAGG
Sbjct  183   GGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAGG  242

Query  240   DQTVHGHALDTTLNGGYQYVHNGGTASDTVVNSDGWQIVKNGGVAGNTTVNQKGRLQVDA  299
             DQTVHG+A +T L+GG QYVHNGGTA++T++N DGWQ++K+GG A++TT+NQKG+LQV+A
Sbjct  243   DQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQVNA  302

Query  300   GGTATNVTLKQGGALVTSTAATVTGINRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN  359
             GG A++VT + GGALVTSTAATVTG NRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN
Sbjct  303   GGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN  362

Query  360   TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEK  419
             TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEK
Sbjct  363   TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEK  422

Query  420   GSSFTLNAGDTATDTTVNgglftarggtlagtttlnngaILTLSGKTVNNDTLTIREGDA  479
             GSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREGDA
Sbjct  423   GSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREGDA  482

Query  480   LLQGGSLTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTALK  539
             LLQGG+LTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTALK
Sbjct  483   LLQGGALTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTALK  542

Query  540   LTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPATL  599
             LTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPATL
Sbjct  543   LTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPATL  602

Query  600   KVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKGI  659
             KVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKGI
Sbjct  603   KVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKGI  662

Query  660   QVVEAINGATTEEGAFVQGNRLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLTQ  719
             QVVEAINGATTEEGAF+QGN+LQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLTQ
Sbjct  663   QVVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLTQ  722

Query  720   AMDYDRIVAGSRSHQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLE  779
             AMDYDRI+AGSRSHQTGV+GENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLE
Sbjct  723   AMDYDRILAGSRSHQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLE  782

Query  780   GDLMRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASGLW  839
             GDL+RTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASGLW
Sbjct  783   GDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASGLW  842

Query  840   ADIVALGTRHSMKASTDNNDFRARGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLD  899
             ADIVA GTRHSMKAS+DNNDFR RGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLD
Sbjct  843   ADIVAQGTRHSMKASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLD  902

Query  900   DGKDNAGYVKFGHGSAQHVRAGFRLGSHNDMTFGEGTSSRAPLRDSAKHSVSELPVNWWV  959
             DG+DNA+YVKFGHGSAQHVRAGFRLGSH+DM FG GTSSR  LR+SAKHSV ELPVNWWV
Sbjct  903   DGQDNASYVKFGHGSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNWWV  962

Query  960   QPSVIRTFSSRGDMRVGTSTAGSGMTFSPSQNGTSLDLQAGLEARVRENITLGVQAGYAH  1019
             QPSVIRTFSSRGDM +GT++AGS MTFSPSQNGTSLDLQAGLEARVRENITLGVQA+YAH
Sbjct  963   QPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQASYAH  1022

Query  1020  SVSGSSAEGYNGQATLNVTF  1039
             S++GSSAEGYN+QATLNVTF
Sbjct  1023  SINGSSAEGYNSQATLNVTF  1042

28) flu in NC_011751


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score = 1354 bits (5137),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 919/1040 (89%), Positives = 989/1040 (96%), Gaps = 1/1040 (0%)

Query  1     MKRHLNTSYRLVWNHITGTLVVASELARSRGKRagvavalslaavtsvpalaaDKVVQAG  60
             MKRHLNT YRLVWNHITG++VVASELAR++GKR+GVAVALSLAAVTS+P LAAD VV++G
Sbjct  3     MKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVHPG  62

Query  61    ETVNDGTLTNHDNQIVLGTANGMTISTGLEYGPDNEANTGGQWIQNGGIANNTTVTGGGL  120
             ETVN+GTL NHDNQ+V GTA+G+T+STGLE GPD++ NTGGQWI+ GG + NTTVT+ G 
Sbjct  63    ETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTANGR  122

Query  121   QRVNAGGSVSDTVIsagggqslqgqaVNTTLNG-GEQWVHEGGIATGTVINEKGWQAIKS  179
             Q V+AGG+ SDTVI  GGGQSL+G AVNTTL+  GEQWVH GG A+GT+IN+ G Q+IK 
Sbjct  123   QIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTIKH  182

Query  180   GAVATDTVVNTGAEGGPDAENGDTGQTVYGDAVRTTINKNGRQIVAAEGTANTTVVYAGG  239
             G++AT+T+VNTGAEGGP++EN  +GQ V G A  TTINKNGRQ++ + G A  T++YAGG
Sbjct  183   GGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAGG  242

Query  240   DQTVHGHALDTTLNGGYQYVHNGGTASGTVVNSDGWQIVKNGGVAGNTTVNQKGRLQVDA  299
             DQTVHG+A +T L+GG QYVHNGGTA+ T++N DGWQ++K+GG A++TT+NQKG+LQV+A
Sbjct  243   DQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQVNA  302

Query  300   GGTATNVTLKQGGALVTSTAATVTGINRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN  359
             GG A++VT + GGALVTSTAATVTG NRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN
Sbjct  303   GGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN  362

Query  360   TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEK  419
             TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEK
Sbjct  363   TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEK  422

Query  420   GSSFTLNAGDTATDTTVNgglftarggtlagtttlnngaILTLSGKTVNNDTLTIREGDA  479
             GSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREGDA
Sbjct  423   GSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREGDA  482

Query  480   LLQGGSLTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTALK  539
             LLQGG+LTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTALK
Sbjct  483   LLQGGALTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTALK  542

Query  540   LTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPATL  599
             LTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPATL
Sbjct  543   LTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPATL  602

Query  600   KVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKGI  659
             KVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKGI
Sbjct  603   KVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKGI  662

Query  660   QVVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYTSMLTQ  719
             QVVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLY+SMLTQ
Sbjct  663   QVVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLTQ  722

Query  720   AMDYDRILAGSRSHQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLE  779
             AMDYDRILAGSRSHQTGV+GENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLE
Sbjct  723   AMDYDRILAGSRSHQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLE  782

Query  780   GDLLRTEVAGMSLTTGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLTHTSSGLW  839
             GDLLRTEVAGMS+T+GVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNL H +SGLW
Sbjct  783   GDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASGLW  842

Query  840   ADIVAQGTRHSMKASSDNNDFRARGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLD  899
             ADIVAQGTRHSMKASSDNNDFR RGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLD
Sbjct  843   ADIVAQGTRHSMKASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLD  902

Query  900   DGQDNAGYVKFGHGSAQHVRAGFRLGSHNDMSFGEGTSSRDTLRDSAKHRVRELPVNWWV  959
             DGQDNA+YVKFGHGSAQHVRAGFRLGSH+DM+FG GTSSRDTLR+SAKH VRELPVNWWV
Sbjct  903   DGQDNASYVKFGHGSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNWWV  962

Query  960   QPSVIRTFSSRGDMSMGTAAAGSNMTFSPSRNGTSLDLQAGLEARVRENITLGVQAGYAH  1019
             QPSVIRTFSSRGDMSMGTAAAGSNMTFSPS+NGTSLDLQAGLEARVRENITLGVQA+YAH
Sbjct  963   QPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQASYAH  1022

Query  1020  SVSGSSAEGYNGQATLNVTF  1039
             S++GSSAEGYN+QATLNVTF
Sbjct  1023  SINGSSAEGYNSQATLNVTF  1042

29) ECNA114_4551 in NC_017644


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score = 1206 bits (4573),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 829/862 (97%), Positives = 851/862 (99%), Gaps = 0/862 (0%)

Query  1    MKRHLNTCYRLVWNHITGAFVVASELARARGKRGGvavalslaavtslpvlaaDIVVHPC  60
            MKRHLNTCYRLVWNHITGAFVVASELARA+GKRGGVAVALSLAAVTSLPVLAADIVVHP 
Sbjct  3    MKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVHPG  62

Query  61   ETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTANGR  120
            ETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTANGR
Sbjct  63   ETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTANGR  122

Query  121  QIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTIKH  180
            QIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTIKH
Sbjct  123  QIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTIKH  182

Query  181  GGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAGG  240
            GGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAGG
Sbjct  183  GGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAGG  242

Query  241  DQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQVNA  300
            DQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQVNA
Sbjct  243  DQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQVNA  302

Query  301  GGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVAGKADNVVLENGGRLDVLSGHTATN  360
            GGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVV GKADNVVLENGGRLDVL+GHTATN
Sbjct  303  GGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN  362

Query  361  TRVDDGGTLDIRNGGAATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEK  420
            TRVDDGGTLD+RNGG+ATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEK
Sbjct  363  TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEK  422

Query  421  GSSFTLNAGDTATDTTVNgglftarggtlagtttlnngatltlsgKTVNNDTLTIREGDA  480
            GSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGA LTLSGKTVNNDTLTIREGDA
Sbjct  423  GSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREGDA  482

Query  481  LLQGGALTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTALK  540
            LLQGGALTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTALK
Sbjct  483  LLQGGALTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTALK  542

Query  541  LTGSTVLNGAIDPTNVTLTSGATWNIPDNATVQSVVDDLSHAGQIHFTSARTGKFVPTTL  600
            LTGSTVLNGAIDPTNVTL+SGATWNIPDNATVQSVVDDLSHAGQIHFTS+RTGKFVP+TL
Sbjct  543  LTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPATL  602

Query  601  QVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSGTGLATTGKGI  660
            +VKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNS++GLAT+GKGI
Sbjct  603  KVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKGI  662

Query  661  QVVEAINGATTEEGAFVQGNMLQAGAFNYTLNRDSDESWYLRSENAYRAEVPLYTSMLTQ  720
            QVVEAINGATTEEGAF+QGN LQAGAFNY+LNRDSDESWYLRSENAYRAEVPLY+SMLTQ
Sbjct  663  QVVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLTQ  722

Query  721  AMDYDRILAGSRSHQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLE  780
            AMDYDRILAGSRSHQTGV+GENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLE
Sbjct  723  AMDYDRILAGSRSHQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLE  782

Query  781  GDLLRTEVAGMSLTTGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLVHTSSGLW  840
            GDLLRTEVAGMS+T+GVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNL+H +SGLW
Sbjct  783  GDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASGLW  842

Query  841  ADIVAQGTRHSSVDVKDDDGSR  862
            ADIVAQGTRHS     D+++ R
Sbjct  843  ADIVAQGTRHSMKASSDNNDFR  864

30) Dd586_2894 in NC_013592


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score =  873 bits (3308),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 592/1050 (57%), Positives = 834/1050 (80%), Gaps = 17/1050 (1%)

Query  33    VKRNLNTSYRLVWNDVLGAFVVVSELATARGKRSSTVLAIAVAGLMSTAALAAGNTTVPA  92
             +KR+LNT YRLVWN++ GAFVV SELA A+GKR++  +A+++A++ S + LAA +  V +
Sbjct  3     MKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAA-DIVVHP  61

Query  93    GQTVDGAVISNHDTQQVWGSATGTVVNTGQEYGDNDDANTGGQFVQSGGVADNTTVNRNG  152
             G+TV+G+ + NHD Q V G+A G  V+TG E G + D NTGGQ +++GG + NTTV  NG
Sbjct  62    GETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTANG  121

Query  153   LQAVLSGGSATRTTINAGGGQSVHGQATDSVLNG-GEQWVQSGGSTTGTVISAGGYQLVK  211
              Q V +GG+A+ T I  GGGQS++G A ++ L+  GEQWV++GG ++GT+I+ +GYQ +K
Sbjct  122   RQIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTIK  181

Query  212   NGAQASGTVVNTGAEGGPDAEN-SDGMFVSGIATDTLIHAGGRQIVAAGGSSTGTTIQAG  270
             +G+ A+GT+VNTGAEGGP++EN S G  V+G A  T I+  GRQ++ ++G + +T I AG
Sbjct  182   HGGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAG  241

Query  271   GDQSVHGQAQSTTLDGGNQYVHAGALATGTTVNAGGWQVVQQSGTADATTVNRDGKLSVS  330
             GDQ+VHG+A++T L+GGNQYVH G+ AT T +N +GWQV++++GTA  TT+N+ GKL V+
Sbjct  242   GDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQVN  301

Query  331   AGGTASNVTLNAGGALVTSTAATVSGINSLGGFNVDAATASATNVLLENGGRLDVLSGGS  390
             AGG AS+VT N+GGALVTSTAATV+G N LG+F+V    + A NV+LENGGRLDVL+G +
Sbjct  302   AGGKASDVTQNTGGALVTSTAATVTGTNRLGAFSV--VEGKADNVVLENGGRLDVLTGHT  359

Query  391   ADTTTVSNggvlavatggvaQHIVMNEGGVLIADSGSTVSGTNTAG-TFGIDAATGRASN  449
             A  T V +GG L V  GG A  + M +GGVL+ADSG++VSGT + G +F+I++  G+A  
Sbjct  360   ATNTRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGG--GQADA  417

Query  450   LHLGNGSMFSVRANGVADNTTVSSGGTLNVSQGGMLSGTTTLTDSA--TLSGNAISNDRV  507
             L L +GS F++ A + A +TTV++G  L  ++GG L+GTTTL ++A  TLSG++++ND +
Sbjct  418   LMLEKGSSFTLNAGDTATDTTVNGG--LFTARGGTLAGTTTLNNGAILTLSGKTVNNDTL  475

Query  508   QVTTATGTVALIsgslggsgqllkdgggTLTVSNGTLTQSAVNLNQGSLILDNAQVSTDI  567
              +    G   L +G+L G+G + K G+GTLTVSN TLTQ AVNLN+G+L L+++ V+TD+
Sbjct  476   TIRE--GDALLQGGALTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDV  533

Query  568   IAQsgtsltltgstVMSGAIDPTDVTLDSGASWNIDRHASVASVLDTLTNAGAISFSAPQ  627
             IAQ GT+L LTGSTV++GAIDPT+VTL SGA+WNI  +A+V SV+D L++AG I F++ +
Sbjct  534   IAQRGTALKLTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTR  593

Query  628   -GNFVPATLTVKNLTGRGGSISMFIRLDDPTFPTDRLAIDGGQATGKTWLNFTSIGNSGL  686
              G+FVPATL VKNL G+ G+IS+ +R D +   +DRL IDGG+ATGKT LN+ + GNS+ 
Sbjct  594   TGKFVPATLKVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSAS  653

Query  687   GLATTGNGIKVVDAVNGATTTGDAFALGHKLQAGAYNYTLNHGTTDENWYLSSEAVYRSE  746
             GLAT+G+GI+VV+A+NGATT  +AF  G+KLQAGA+NY+LN+++ DE+WYL SE  YR+E
Sbjct  654   GLATSGKGIQVVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDS-DESWYLRSENAYRAE  712

Query  747   VALYASLYAQSMDYDRALAGTYSQRS-TAQEARGMWGRVQGGHTGHGDRSGIAQGATPES  805
             V+LYAS+ +Q+MDYDR LAG+ S+++  + E  +++  +QGGH GH++ +GIA+GATPES
Sbjct  713   VPLYASMLTQAMDYDRILAGSRSHQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPES  772

Query  806   SGSYGFVQLGGDLVNAQTGPVSLTAGIYGAAGESRSDVKNDDRSAAGTARDTVYSLGGYL  865
             SGSYGFV+L GDL+ ++ + +S+TAG+YGAAG+S  DVK+DD S AGT RD   SLGGYL
Sbjct  773   SGSYGFVRLEGDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYL  832

Query  866   TAVHQPSGLWADVVAQGSRHSLKAQSDNNNFDTHGQGWLGSLETGLPLSVSQGLVLEPQL  925
               +H++SGLWAD+VAQG+RHS+KA SDNN+F  +G GWLGSLETGLP+S+++ L+LEPQL
Sbjct  833   NLIHNASGLWADIVAQGTRHSMKASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQL  892

Query  926   QYVWQGLSLNNGHDDGGYVDFGHGSAQHVRAGLRFGNQSEMTFGQGSSTLPGHERSMKHS  985
             QY WQGLSL++G+D+++YV FGHGSAQHVRAG+R+G++ +M FG+G+S+      S KHS
Sbjct  893   QYTWQGLSLDDGQDNASYVKFGHGSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHS  952

Query  986   ISELPVSWWVRPSVVRTFSSQGDLNMGTATPGSNVTFSPSQDGTSAELLAGLSAQIRENV  1045
             + ELPV+WWV+PSV+RTFSS+GD++MGTA++GSN+TFSPSQ+GTS +L AGL A++REN+
Sbjct  953   VRELPVNWWVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENI  1012

Query  1046  TLGIQGGYTRSLSGNSAEGYNGQASVKVLF  1075
             TLG+Q++Y++S++G+SAEGYN+QA+++V F
Sbjct  1013  TLGVQASYAHSINGSSAEGYNSQATLNVTF  1042

31) flu1 in NC_010498


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score =  721 bits (2727),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 523/894 (59%), Positives = 654/894 (74%), Gaps = 58/894 (6%)

Query  78    GTTNGMTISTGLEYGTDNEANTGGQWVQDGGTASNTTISSGGLQFVGAGGKATDTIINEG  137
             G + G  ++TG E G ++E  ++GQ V  GGTA +TTI+  G Q + ++G A DT+I  G
Sbjct  184   GLATGTIVNTGAEGGPESENVSSGQMV--GGTAESTTINKNGRQVIWSSGMARDTLIYAG  241

Query  138   GGQSLKGLALNTTLNGGEQWMHEGAIATGTVINDKGWQVVKPGAVATDTVVNTGAEGGPD  197
             G+Q++ G A NT L+GG+Q +H+G+ AT T+IN  GWQV+K G                 
Sbjct  242   GDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEG-----------------  284

Query  198   AENGDTGQFVRGNAVRTTINKNGRQIVTVEGTANTTVVYAGGDQTVHGHALDTTLNGGNQ  257
                        G A +TTIN++G+  V   G A+     +GG       A  T  N    
Sbjct  285   -----------GTAAHTTINQKGKLQVNAGGKASDVTQNTGGALVTSTAATVTGTNRLGA  333

Query  258   YVHNGGTTSDTVVNSDGWQIIKEGGLADFTTVNQKGKLQVNAGGTATNVTLKQGGALVTS  317
             +    G + + V++++G+  +  G  A  T V++ G L+V  GGTAT V++ +GG L++ 
Sbjct  334   FSVVEGKADNVVLENGGRLDVLTGHTATNTRVDDGGTLDVRNGGTATTVSMGNGGVLLAD  393

Query  318   TAATVTGSNRLGN-FAVENGKADGVVLESGGRLDVLEGHSAQKTRVDDGGTLAVSAGGKA  376
             ++A+V+G+   G+ F++  G+AD+++LE G+ + +  G++A  T V++G  L  + GG  
Sbjct  394   SGAAVSGTRSDGKAFSIGGGQADALMLEKGSSFTLNAGDTATDTTVNGG--LFTARGGTL  451

Query  377   TGVTMTSGGALIADSGATVEGTNASGKFSIDGISGQASGLLLENG-------GSFTVNAG  429
             +G T  + GA+++ SG TV+    + +   +G +   +G L  NG       G++TV+  
Sbjct  452   AGTTTLNNGAILTLSGKTVNNDTLTIR---EGDALLQGGALTGNGSVEKSGSGTLTVSNT  508

Query  430   GQAGNTTVGHRGTLTLAAG----GSLSGR-TQLSKGASMVLNGDVVSTGDIVNAGEI-RF  483
               + ++   + GTLTL  +    + ++ R T L   +S VLNG + +T   + +G    +
Sbjct  509   TLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTALKLTGSTVLNGAIDPTNVTLASGATWNI  568

Query  484   DNQTTQDAVLSRAVAKGDAPVTFHK--------LTTSNLTGQGGTINMRVRLD-GSNASD  534
              +++T ++V+      G+   T  +        L   NL GQ GTI++RVR D + N +D
Sbjct  569   PDNATVQSVVDDLSHAGQIHFTSTRTGKFVPATLKVKNLNGQNGTISLRVRPDMAQNNAD  628

Query  535   QLVINGGQATGKTWLAFTNVGNSNLGVATSGQGIRVVDAQNGATTEEGAFALSRPLQAGA  594
             +LVI+GG+ATGKT L + N GNS  G+ATSG+GI+VV+A NGATTEEGAF  +  LQAGA
Sbjct  629   RLVIDGGRATGKTILNLVNAGNSASGLATSGKGIQVVEAINGATTEEGAFIQGNKLQAGA  688

Query  595   FNYTLNRDSDEDWYLRSENAYRAEVPLYASMLTQAMDYDRILAGSRSHQTGVNGENNSVR  654
             FNY+LNRDSDE WYLRSENAYRAEVPLYASMLTQAMDYDRILAGSRSHQTGV+GENNSVR
Sbjct  689   FNYSLNRDSDESWYLRSENAYRAEVPLYASMLTQAMDYDRILAGSRSHQTGVSGENNSVR  748

Query  655   LSIQGGHLGHDNNGGIARGATPESSGSYGFVRLESDLLRTEVAGMSVTAGVYSAAGHSSV  714
             LSIQGGHLGHDNNGGIARGATPESSGSYGFVRLE+DLLRTEVAGMSVTAGVY+AAGHSSV
Sbjct  749   LSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEGDLLRTEVAGMSVTAGVYGAAGHSSV  808

Query  715   DVKDDDGSRAGTVRDDAGSLGGYLNLVHTSSGLWADIMAQGTRHSMKASSDNNDFRARGW  774
             DVKDDDGSRAGTVRDDAGSLGGYLNL+H +SGLWADI+AQGTRHSMKASSDNNDFR RGW
Sbjct  809   DVKDDDGSRAGTVRDDAGSLGGYLNLIHNASGLWADIVAQGTRHSMKASSDNNDFRVRGW  868

Query  775   GWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDDGQDNAGYVKFGHGSAQHMRAGFRLG  834
             GWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDDGQDNA+YVKFGHGSAQH+RAGFRLG
Sbjct  869   GWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDDGQDNASYVKFGHGSAQHVRAGFRLG  928

Query  835   SHNDMSFGEGTSSRDTLRDSAKHRVRELPVNWWVQPSVIRTFSSRGDMSMGTAAAGSNMT  894
             SH+DM+FG GTSSRDTLR+SAKH VRELPVNWWVQPSVIRTFSSRGDMSMGTAAAGSNMT
Sbjct  929   SHHDMNFGKGTSSRDTLRGSAKHSVRELPVNWWVQPSVIRTFSSRGDMSMGTAAAGSNMT  988

Query  895   FSPSQNGTSLDLQAGLEARVRENITLGVQAGYAHSVSGSSAEGYNGQATLNVTF  948
             FSPSQNGTSLDLQAGLEARVRENITLGVQA+YAHS++GSSAEGYN+QATLNVTF
Sbjct  989   FSPSQNGTSLDLQAGLEARVRENITLGVQASYAHSINGSSAEGYNSQATLNVTF  1042


 Score =  429 bits (1616),  Expect = 4e-121, Method: Compositional matrix adjust.
 Identities = 309/477 (65%), Positives = 396/477 (84%), Gaps = 6/477 (1%)

Query  1    MKRHLNTSYRLVWNHITGTLVVASELARSRGKRagvavalslaavtpvpalaadtvvEAG  60
            MKRHLNT YRLVWNHITG++VVASELAR++GKR+GVAVALSLAAVT++P LAAD VV++G
Sbjct  3    MKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVHPG  62

Query  61   ETVNGGTLTNHDNQIVFGTTNGMTISTGLEYGTDNEANTGGQWVQDGGTASNTTISSGGL  120
            ETVNGGTL NHDNQ+V GT++G+T+STGLE G D++ NTGGQW++ GGT+ NTT+++ G 
Sbjct  63   ETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTANGR  122

Query  121  QFVGAGGKATDTIINEGGGQSLKGLALNTTLNG-GEQWMHEGAIATGTVINDKGWQVVKP  179
            Q+V AGG A+DT+I +GGGQSL+GLA+NTTL+  GEQW+H G+ A+GT+IN+ G Q +K 
Sbjct  123  QIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTIKH  182

Query  180  GAVATDTVVNTGAEGGPDAENGDTGQFVRGNAVRTTINKNGRQIVTVEGTANTTVVYAGG  239
            G++AT+T+VNTGAEGGP++EN  +GQ V G A  TTINKNGRQ++   G A  T++YAGG
Sbjct  183  GGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAGG  242

Query  240  DQTVHGHALDTTLNGGNQYVHNGGTTSDTVVNSDGWQIIKEGGLADFTTVNQKGKLQVNA  299
            DQTVHG+A +T L+GGNQYVHNGGT+++T++N DGWQ+IKEGG A  TT+NQKGKLQVNA
Sbjct  243  DQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQVNA  302

Query  300  GGTATNVTLKQGGALVTSTAATVTGSNRLGNFAVENGKADGVVLESGGRLDVLEGHSAQK  359
            GG A++VT + GGALVTSTAATVTG+NRLG F+V +GKAD VVLE+GGRLDVL GH+A +
Sbjct  303  GGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN  362

Query  360  TRVDDGGTLAVSAGGKATGVTMTSGGALIADSGATVEGTNASGK-FSIDGISGQASGLLL  418
            TRVDDGGTL V  GG AT V+M +GG L+ADSGA+V GT + GK FSI+G  GQA +L+L
Sbjct  363  TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGG--GQADALML  420

Query  419  ENGGSFTVNAGGQAGNTTVGHRGTLTLAAGGSLSGRTQLSKGASMVLNGDVVSTGDI  475
            E+G+SFT+NAG+ A +TTV   G L  A GG+L+G T L++GA + L+G  V+ + +
Sbjct  421  EKGSSFTLNAGDTATDTTV--NGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTL  475

32) P12B_c3169 in NC_017663


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score =  721 bits (2729),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 518/1008 (52%), Positives = 755/1008 (75%), Gaps = 41/1008 (4%)

Query  165   VHSGGITSGTIINKDGAQLVKAGAQATGSVVNTGAQGGPDAENN-DGQWV--AGTATDTT  221
             VH+G   +G  + +++ Q+V + A+  G  V+TG + GPD+++N +GQW+  +GT+ +TT
Sbjct  59    VHPGETVNGGTLVNHDNQFVSGTAD--GVTVSTGLELGPDSDENTGGQWIKAGGTGRNTT  116

Query  222   INNDGRQIIAAGGLATSTVIKADGDQSVHGSAINTLLEG-GFQYVHEGASAEGTVISQNG  280
             +  +GRQI+ AGG A+ TVI+ +G+QS++G A+NT L+  G Q VH G+ A GT+I+Q+G
Sbjct  117   VTANGRQIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDG  176

Query  281   WQVVKNGATATDTTILNGTGTEvangnsassqsvqaggsaLNTTIGDDS-----PSGELL  335
              Q +K+G+ AT+T +   TG+E +  +   S +   GG+A +TTI  ++     +SG   
Sbjct  177   YQTIKHGGLATGTIV--NTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMAR  234

Query  336   TDLSY----QMVDGGRAENTTINNGGVQSVFAGGTAIGSVVNRGGRLEVSIWQDEPVAGK  391
               L Y    Q V+G    + T  +GG Q V  GGTA  +++NR+G      WQ       
Sbjct  235   DTLIYAGGDQTVHG--EAHNTRLEGGNQYVHNGGTATETLINRDG------WQV------  280

Query  392   TAVAGSANNVTVEADGILSVDAGTSATDVVIKQGGALWATTDSTVTGTNSLGDF-FIDGT  450
                +G+A + T++  G L V+AG  A+DV  + GGAL ++T +TVTGTN LG F  ++G 
Sbjct  281   IKEGGTAAHTTINQKGKLQVNAGGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGK  340

Query  451   THIATNVLLENGGRLDVLGNGIADTTTVNQGSILAVATGGKAQNIVMHDGGVLIADTGAT  510
             ++   NV+LENGGRLDVL    A  T V++G+ L V  GG A  + M +GGVL+AD+GA+
Sbjct  341   AD---NVVLENGGRLDVLTGHTATNTRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAA  397

Query  511   VSGTNTTG-AFGIDGATGKASNLRLDNGSQFTVLGNGSADNTTVGAGSTLNVAQggtltg  569
             VSGT + G AF+I+G  G+A  L L++GS FT+ + ++A +TTV +G     +   + T 
Sbjct  398   VSGTRSDGKAFSIGG--GQADALMLEKGSSFTLNAGDTATDTTVNGGLFTARGGTLAGTT  455

Query  570   tttfgdgASLTGSATNSGQLHFSNGNAAI-SGSVSGDGQLLKEGNGTLTVSNGTLSQSQV  628
             T   G   +L+G + N++ L + +G+A + +G+++G+G + K G+GTLTVSN TL+Q  V
Sbjct  456   TLNNGAILTLSGKTVNNDTLTIREGDALLQGGALTGNGSVEKSGSGTLTVSNTTLTQKAV  515

Query  629   TLNQGTLALNNAIINSDIIAQSGTQVRLTGNSVMNGAIDPTDVTLDSAASWNIQRGAAVK  688
              LN+GTL+LN++ + +D+IAQ GT ++LTG++V+NGAIDPT+VTL S+A+WNI   A+V+
Sbjct  516   NLNEGTLTLNDSTVTTDVIAQRGTALKLTGSTVLNGAIDPTNVTLASGATWNIPDNATVQ  575

Query  689   SVLDNLDNAGTISFTPATGSQFVPETLTVTNLTGRNGTINMSIRLDDPAFPTDMLVIDGG  748
             SV+D+L +AG I FT++  ++FVP TL V NL G+NGTI++ +R D +   +D LVIDGG
Sbjct  576   SVVDDLSHAGQIHFTSTRTGKFVPATLKVKNLNGQNGTISLRVRPDMAQNNADRLVIDGG  635

Query  749   QATGKTWLNFthtgdaglglattgNGIKVVDAINGATTEAGAFALGRKLQAGAYNYTLSH  808
             +ATGKT LN+ ++G+++ GLAT+G+GI+VV+AINGATTE GAF  G KLQAGA+NY+L++
Sbjct  636   RATGKTILNLVNAGNSASGLATSGKGIQVVEAINGATTEEGAFIQGNKLQAGAFNYSLNR  695

Query  809   GSADENWYLTSEAGYRAEVALYASLFAQSMDYDRALAGTYSQRSS-AVNDQGIWGRIQGG  867
             +S DE+WYL SE +YRAEV+LYAS+++Q+MDYDR LAG+ S++++ + ++++++  IQGG
Sbjct  696   DS-DESWYLRSENAYRAEVPLYASMLTQAMDYDRILAGSRSHQTGVSGENNSVRLSIQGG  754

Query  868   HTGRDGNGGIAQGDTPESSGSYGFMQLGGDLFKHDtgtlslttglygAVGQSSVDVKNDD  927
             H G+D NGGIA+G TPESSGSYGF++L GDL++ + + +S+T+G+YGA G+SSVDVK+DD
Sbjct  755   HLGHDNNGGIARGATPESSGSYGFVRLEGDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDD  814

Query  928   RSAAGSVRDTVYSIGGYLTAVHDASGLWADIVAQGSRHSLKANSSDNRFDTDGTGWLASV  987
              S AG+VRD   S+GGYL  +H+ASGLWADIVAQG+RHS+KA+S +N F   G GWL+S+
Sbjct  815   GSRAGTVRDDAGSLGGYLNLIHNASGLWADIVAQGTRHSMKASSDNNDFRVRGWGWLGSL  874

Query  988   ETGLPFNISQGLVLEPQLQYIWQGLSLDDGHDNGGYVNFGDGSAQHVRAGIRFGSSSEMD  1047
             ETGLPF+I++ L+LEPQLQY WQGLSLDDG+DN++YV+FG+GSAQHVRAG+R+GS  +M+
Sbjct  875   ETGLPFSITDNLMLEPQLQYTWQGLSLDDGQDNASYVKFGHGSAQHVRAGFRLGSHHDMN  934

Query  1048  FGQGTSAVTGFADSMKRSASELPVNWWVRPSVIRTFSSDGDMSMGTATAGSNVSFTPSQK  1107
             FG+GTS+   + +S K+S  ELPVNWWV+PSVIRTFSS GDMSMGTA+AGSN++F+PSQ+
Sbjct  935   FGKGTSSRDTLRGSAKHSVRELPVNWWVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQN  994

Query  1108  GTSLDLQAGIDARVRQNVTLGVQGGYTRSVSGNSVDGYNGQATLKVTF  1155
             GTSLDLQAG++ARVR+N+TLGVQ++Y++S++G+S +GYN+QATL+VTF
Sbjct  995   GTSLDLQAGLEARVRENITLGVQASYAHSINGSSAEGYNSQATLNVTF  1042


 Score =  246 bits (918),  Expect = 7e-66, Method: Compositional matrix adjust.
 Identities = 216/505 (43%), Positives = 337/505 (67%), Gaps = 45/505 (8%)

Query  1    MMKRNLNTSYRLVWNEVLGAFVVVSELAKAKGKRSTavlalavaglvaspaalaDDAPGN  60
            +MKR+LNT YRLVWN++ GAFVV SELA+A+GKR+   +AL++A++ + P   AD     
Sbjct  2    LMKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAAD-----  56

Query  61   TRTVAAGEVVNGAVIGNHDSQIVFGKTNNTVINTGLEFGADNDDNSGGQWVQTGGVANQT  120
               V +GE VNG+ + NHD+Q+V G ++   ++TGLE+G+D+D+N+GGQW+++GG + +T
Sbjct  57   -IVVHPGETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNT  115

Query  121  TINNSGLQGVLAGGSATDTTVNSGGGQSVHGQASDTTLDG-GTQWVHSGGITSGTIINKD  179
            T+  +G Q V AGG+A+DT +  GGGQS++G A +TTLD  G QWVH+GG ++GTIIN+D
Sbjct  116  TVTANGRQIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQD  175

Query  180  GAQLVKAGAQATGSVVNTGAQGGPDAEN-NDGQWVAGTATDTTINNDGRQIIAAGGLATS  238
            G Q +K G+ ATG++VNTGA+GGP++EN + GQ V+GTA  TTIN++GRQ+I ++G+A  
Sbjct  176  GYQTIKHGGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARD  235

Query  239  TVIKADGDQSVHGSAINTLLEGGFQYVHEGASAEGTVISQNGWQVVKNGATATDTTILNG  298
            T+I A+GDQ+VHG A NT LEGG QYVH+G++A  T+I+++GWQV+K+G+TA++TTI N 
Sbjct  236  TLIYAGGDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTI-NQ  294

Query  299  TGTEvangnsassqsvqaggsaLNTTIGDDSPSGELLTDLSYQMVDGGRAENTTINNGGV  358
             G    N+ + +S+  Q  G+AL T+ +    + + L   ++ +V+ G+A+N        
Sbjct  295  KGKLQVNAGGKASDVTQNTGGALVTSTAATVTGTNRLG--AFSVVE-GKADNV-------  344

Query  359  QSVFAGGTAIGSVVNRGGRLEVSIWQDEPVAGKTAVAGSANNVTVEADGILSVDAGTSAT  418
                        V++ GGRL+V       ++G TA      N  V+ +G L V  G +AT
Sbjct  345  ------------VLENGGRLDV-------LTGHTA-----TNTRVDDGGTLDVRNGGTAT  380

Query  419  DVVIKQGGALWATTDSTVTGTNSLGDFFIDGTTHIATNVLLENGGRLDVLGNGIADTTTV  478
             V + +GG L A ++++V+GT S G  F  G  + A  ++LE+G+ +  L  G + T T 
Sbjct  381  TVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQ-ADALMLEKGSSF-TLNAGDTATDTT  438

Query  479  NQGSILAVATGGKAQNIVMHDGGVL  503
             +G++++   G  A    +++G++L
Sbjct  439  VNGGLFTARGGTLAGTTTLNNGAIL  463

33) flu in NC_017628


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score =  719 bits (2718),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 530/921 (58%), Positives = 674/921 (74%), Gaps = 68/921 (7%)

Query  57    VQAGETVNGGTLTNHDNQIVL--GTANGMTISTGLEYGPDNEANTGGQWIQNGGIANNTT  114
             V++G    G  + +++ Q +   G A G  ++TG E GP++E  ++GQ +  GG A++TT
Sbjct  161   VHGGGKAAGTIINQDGYQTIKHGGLATGTIVNTGAEGGPESENVSSGQMV--GGTAESTT  218

Query  115   VTGGGLQRVNAGGSVSDTVIsagggqslqgqaVNTTLNGGEQWVHEGGIATGTVINEKGW  174
             +   G Q + ++G   DT+I AGG+Q+++G+A NT L+GG+Q VH+GG AT T+IN  GW
Sbjct  219   INKNGRQVIWSSGMARDTLIYAGGDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGW  278

Query  175   QAVKSGAMATDTVVNTGAEGGPDAENGDTGQTVYGDAVRTTINKNGRQIVAAEGTANTTV  234
             Q +K G                            G A +TTIN++G+  V A G A+   
Sbjct  279   QVIKEG----------------------------GTAAHTTINQKGKLQVNAGGKASDVT  310

Query  235   VYAGGDQTVHGHALDTTLN--GGYQYVHNGGTASDTVVNSDGWQIIKEGGLADFTTVNQK  292
               +GG       A  T  N  G++  V+  G A + V++++G+  +  G  A  T V++ 
Sbjct  311   QNTGGALVTSTAATVTGTNRLGAFSVVE--GKADNVVLENGGRLDVLTGHTATNTRVDDG  368

Query  293   GKLQVNAGGTATNVTLTQGGALVTSTAATVTGSNRLGN-FTVENGNADGVVLESGGRLDV  351
             G L+V  GGTAT V++ +GG L++ ++A+V+G+   G+ F++  G+AD+++LE G+ + +
Sbjct  369   GTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEKGSSFTL  428

Query  352   LEGHSAWKTLVDDGGTLAVSAGGKATDVTMTSGGALIADSGATVEGTNASGKFSIDGISG  411
               G++A  T V++G  L  + GG  ++ T  + GA+++ SG TV+    + +   +G + 
Sbjct  429   NAGDTATDTTVNGG--LFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIR---EGDAL  483

Query  412   QASGLLLENG-------GSFTVNAGGLASNTTVGHRGTLTLAAGGSLSGRTQLSKGASMV  464
               +G L  NG       G++TV+   L+ ++   + GTLTL  + +++      +G+++ 
Sbjct  484   LQGGALTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDS-TVTTDVIAQRGTALK  542

Query  465   LNGDVVSTGDIVNAGEIRFDNQTT---PDAALSRAVAKG---DSPVTFH----------K  508
             L G  V  G I ++ ++ + + +T   PD A  ++V  +    + + F            
Sbjct  543   LTGSTVLNGAI-DPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPAT  601

Query  509   LTTSNLTGQGGTINMRVRLD-GSNASDQLVINGGQATGKTWLAFTNVGNSNLGVATSGQG  567
             L   NL GQ GTI++RVR D + N +D+LVI+GG+ATGKT L + N GNS  G+ATSG+G
Sbjct  602   LKVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKG  661

Query  568   IRVVDAQNGATTEEGAFALSRPLQAGAFNYTLNRDSDEDWYLRSENAYRAEVPLYASMLT  627
             I+VV+A NGATTEEGAF  +  LQAGAFNY+LNRDSDE WYLRSENAYRAEVPLYASMLT
Sbjct  662   IQVVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLT  721

Query  628   QAMDYDRILAGSRSHQSGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESNGSYGFVRL  687
             QAMDYDRILAGSRSHQ+GVSGENNSVRLSIQGGHLGHDNNGGIARGATPES+GSYGFVRL
Sbjct  722   QAMDYDRILAGSRSHQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRL  781

Query  688   EGDLLRTEVAGMSLTTGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLHLVHTSSGL  747
             EGDLLRTEVAGMS+T+GVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYL+L+H +SGL
Sbjct  782   EGDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASGL  841

Query  748   WADIVAQGTRHSMKASSDNNDFRARGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSL  807
             WADIVAQGTRHSMKASSDNNDFR RGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSL
Sbjct  842   WADIVAQGTRHSMKASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSL  901

Query  808   DDGQDNAGYVKFGHGSAQHVRAGFRLGSHNDMNFGKGTSSRDTLHDSAKHSVRELPVNWW  867
             DDGQDNA+YVKFGHGSAQHVRAGFRLGSH+DMNFGKGTSSRDTL++SAKHSVRELPVNWW
Sbjct  902   DDGQDNASYVKFGHGSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNWW  961

Query  868   VQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSRNGTSLDLQAGLEARVRENITLGVQAGYA  927
             VQPSVIRTFSSRGDMSMGTAAAGSNMTFSPS+NGTSLDLQAGLEARVRENITLGVQA+YA
Sbjct  962   VQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQASYA  1021

Query  928   HSVSGSSAEGYNGQATLNVTF  948
             HS++GSSAEGYN+QATLNVTF
Sbjct  1022  HSINGSSAEGYNSQATLNVTF  1042


 Score =  410 bits (1542),  Expect = 3e-115, Method: Compositional matrix adjust.
 Identities = 314/477 (66%), Positives = 393/477 (83%), Gaps = 6/477 (1%)

Query  1    MKRHLNTSYRLVWNHITGTLVVASELARSRGKgagvavalslaavtsvpalaaDTVVQAG  60
            MKRHLNT YRLVWNHITG++VVASELAR++GK +GVAVALSLAAVTS+P LAAD VV++G
Sbjct  3    MKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVHPG  62

Query  61   ETVNGGTLTNHDNQIVLGTANGMTISTGLEYGPDNEANTGGQWIQNGGIANNTTVTGGGL  120
            ETVNGGTL NHDNQ+V GTA+G+T+STGLE GPD++ NTGGQWI+ GG + NTTVT+ G 
Sbjct  63   ETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTANGR  122

Query  121  QRVNAGGSVSDTVIsagggqslqgqaVNTTLNG-GEQWVHEGGIATGTVINEKGWQAVKS  179
            Q V+AGG+ SDTVI  GGGQSL+G AVNTTL+  GEQWVH GG A+GT+IN+ G Q++K 
Sbjct  123  QIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTIKH  182

Query  180  GAMATDTVVNTGAEGGPDAENGDTGQTVYGDAVRTTINKNGRQIVAAEGTANTTVVYAGG  239
            G++AT+T+VNTGAEGGP++EN  +GQ V G A  TTINKNGRQ++ + G A  T++YAGG
Sbjct  183  GGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAGG  242

Query  240  DQTVHGHALDTTLNGGYQYVHNGGTASDTVVNSDGWQIIKEGGLADFTTVNQKGKLQVNA  299
            DQTVHG+A +T L+GG QYVHNGGTA++T++N DGWQ+IKEGG A  TT+NQKGKLQVNA
Sbjct  243  DQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQVNA  302

Query  300  GGTATNVTLTQGGALVTSTAATVTGSNRLGNFTVENGNADGVVLESGGRLDVLEGHSAWK  359
            GG A++VT   GGALVTSTAATVTG+NRLG F+V +G+AD VVLE+GGRLDVL GH+A +
Sbjct  303  GGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN  362

Query  360  TLVDDGGTLAVSAGGKATDVTMTSGGALIADSGATVEGTNASGK-FSIDGISGQASGLLL  418
            T VDDGGTL V  GG AT V+M +GG L+ADSGA+V GT + GK FSI+G  GQA +L+L
Sbjct  363  TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGG--GQADALML  420

Query  419  ENGGSFTVNAGGLASNTTVGHRGTLTLAAGGSLSGRTQLSKGASMVLNGDVVSTGDI  475
            E+G+SFT+NAG+ A++TTV   G L  A GG+L+G T L++GA + L+G  V+ + +
Sbjct  421  EKGSSFTLNAGDTATDTTV--NGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTL  475

34) UM146_12220 in NC_017632


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score =  719 bits (2718),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 530/921 (58%), Positives = 674/921 (74%), Gaps = 68/921 (7%)

Query  57    VQAGETVNGGTLTNHDNQIVL--GTANGMTISTGLEYGPDNEANTGGQWIQNGGIANNTT  114
             V++G    G  + +++ Q +   G A G  ++TG E GP++E  ++GQ +  GG A++TT
Sbjct  161   VHGGGKAAGTIINQDGYQTIKHGGLATGTIVNTGAEGGPESENVSSGQMV--GGTAESTT  218

Query  115   VTGGGLQRVNAGGSVSDTVIsagggqslqgqaVNTTLNGGEQWVHEGGIATGTVINEKGW  174
             +   G Q + ++G   DT+I AGG+Q+++G+A NT L+GG+Q VH+GG AT T+IN  GW
Sbjct  219   INKNGRQVIWSSGMARDTLIYAGGDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGW  278

Query  175   QAVKSGAMATDTVVNTGAEGGPDAENGDTGQTVYGDAVRTTINKNGRQIVAAEGTANTTV  234
             Q +K G                            G A +TTIN++G+  V A G A+   
Sbjct  279   QVIKEG----------------------------GTAAHTTINQKGKLQVNAGGKASDVT  310

Query  235   VYAGGDQTVHGHALDTTLN--GGYQYVHNGGTASDTVVNSDGWQIIKEGGLADFTTVNQK  292
               +GG       A  T  N  G++  V+  G A + V++++G+  +  G  A  T V++ 
Sbjct  311   QNTGGALVTSTAATVTGTNRLGAFSVVE--GKADNVVLENGGRLDVLTGHTATNTRVDDG  368

Query  293   GKLQVNAGGTATNVTLTQGGALVTSTAATVTGSNRLGN-FTVENGNADGVVLESGGRLDV  351
             G L+V  GGTAT V++ +GG L++ ++A+V+G+   G+ F++  G+AD+++LE G+ + +
Sbjct  369   GTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEKGSSFTL  428

Query  352   LEGHSAWKTLVDDGGTLAVSAGGKATDVTMTSGGALIADSGATVEGTNASGKFSIDGISG  411
               G++A  T V++G  L  + GG  ++ T  + GA+++ SG TV+    + +   +G + 
Sbjct  429   NAGDTATDTTVNGG--LFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIR---EGDAL  483

Query  412   QASGLLLENG-------GSFTVNAGGLASNTTVGHRGTLTLAAGGSLSGRTQLSKGASMV  464
               +G L  NG       G++TV+   L+ ++   + GTLTL  + +++      +G+++ 
Sbjct  484   LQGGALTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDS-TVTTDVIAQRGTALK  542

Query  465   LNGDVVSTGDIVNAGEIRFDNQTT---PDAALSRAVAKG---DSPVTFH----------K  508
             L G  V  G I ++ ++ + + +T   PD A  ++V  +    + + F            
Sbjct  543   LTGSTVLNGAI-DPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPAT  601

Query  509   LTTSNLTGQGGTINMRVRLD-GSNASDQLVINGGQATGKTWLAFTNVGNSNLGVATSGQG  567
             L   NL GQ GTI++RVR D + N +D+LVI+GG+ATGKT L + N GNS  G+ATSG+G
Sbjct  602   LKVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKG  661

Query  568   IRVVDAQNGATTEEGAFALSRPLQAGAFNYTLNRDSDEDWYLRSENAYRAEVPLYASMLT  627
             I+VV+A NGATTEEGAF  +  LQAGAFNY+LNRDSDE WYLRSENAYRAEVPLYASMLT
Sbjct  662   IQVVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLT  721

Query  628   QAMDYDRILAGSRSHQSGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESNGSYGFVRL  687
             QAMDYDRILAGSRSHQ+GVSGENNSVRLSIQGGHLGHDNNGGIARGATPES+GSYGFVRL
Sbjct  722   QAMDYDRILAGSRSHQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRL  781

Query  688   EGDLLRTEVAGMSLTTGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLHLVHTSSGL  747
             EGDLLRTEVAGMS+T+GVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYL+L+H +SGL
Sbjct  782   EGDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASGL  841

Query  748   WADIVAQGTRHSMKASSDNNDFRARGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSL  807
             WADIVAQGTRHSMKASSDNNDFR RGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSL
Sbjct  842   WADIVAQGTRHSMKASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSL  901

Query  808   DDGQDNAGYVKFGHGSAQHVRAGFRLGSHNDMNFGKGTSSRDTLHDSAKHSVRELPVNWW  867
             DDGQDNA+YVKFGHGSAQHVRAGFRLGSH+DMNFGKGTSSRDTL++SAKHSVRELPVNWW
Sbjct  902   DDGQDNASYVKFGHGSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNWW  961

Query  868   VQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSRNGTSLDLQAGLEARVRENITLGVQAGYA  927
             VQPSVIRTFSSRGDMSMGTAAAGSNMTFSPS+NGTSLDLQAGLEARVRENITLGVQA+YA
Sbjct  962   VQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQASYA  1021

Query  928   HSVSGSSAEGYNGQATLNVTF  948
             HS++GSSAEGYN+QATLNVTF
Sbjct  1022  HSINGSSAEGYNSQATLNVTF  1042


 Score =  410 bits (1542),  Expect = 3e-115, Method: Compositional matrix adjust.
 Identities = 314/477 (66%), Positives = 393/477 (83%), Gaps = 6/477 (1%)

Query  1    MKRHLNTSYRLVWNHITGTLVVASELARSRGKgagvavalslaavtsvpalaaDTVVQAG  60
            MKRHLNT YRLVWNHITG++VVASELAR++GK +GVAVALSLAAVTS+P LAAD VV++G
Sbjct  3    MKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVHPG  62

Query  61   ETVNGGTLTNHDNQIVLGTANGMTISTGLEYGPDNEANTGGQWIQNGGIANNTTVTGGGL  120
            ETVNGGTL NHDNQ+V GTA+G+T+STGLE GPD++ NTGGQWI+ GG + NTTVT+ G 
Sbjct  63   ETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTANGR  122

Query  121  QRVNAGGSVSDTVIsagggqslqgqaVNTTLNG-GEQWVHEGGIATGTVINEKGWQAVKS  179
            Q V+AGG+ SDTVI  GGGQSL+G AVNTTL+  GEQWVH GG A+GT+IN+ G Q++K 
Sbjct  123  QIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTIKH  182

Query  180  GAMATDTVVNTGAEGGPDAENGDTGQTVYGDAVRTTINKNGRQIVAAEGTANTTVVYAGG  239
            G++AT+T+VNTGAEGGP++EN  +GQ V G A  TTINKNGRQ++ + G A  T++YAGG
Sbjct  183  GGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAGG  242

Query  240  DQTVHGHALDTTLNGGYQYVHNGGTASDTVVNSDGWQIIKEGGLADFTTVNQKGKLQVNA  299
            DQTVHG+A +T L+GG QYVHNGGTA++T++N DGWQ+IKEGG A  TT+NQKGKLQVNA
Sbjct  243  DQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQVNA  302

Query  300  GGTATNVTLTQGGALVTSTAATVTGSNRLGNFTVENGNADGVVLESGGRLDVLEGHSAWK  359
            GG A++VT   GGALVTSTAATVTG+NRLG F+V +G+AD VVLE+GGRLDVL GH+A +
Sbjct  303  GGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN  362

Query  360  TLVDDGGTLAVSAGGKATDVTMTSGGALIADSGATVEGTNASGK-FSIDGISGQASGLLL  418
            T VDDGGTL V  GG AT V+M +GG L+ADSGA+V GT + GK FSI+G  GQA +L+L
Sbjct  363  TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGG--GQADALML  420

Query  419  ENGGSFTVNAGGLASNTTVGHRGTLTLAAGGSLSGRTQLSKGASMVLNGDVVSTGDI  475
            E+G+SFT+NAG+ A++TTV   G L  A GG+L+G T L++GA + L+G  V+ + +
Sbjct  421  EKGSSFTLNAGDTATDTTV--NGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTL  475

35) UTI89_C1139 in NC_007946


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score =  719 bits (2718),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 530/921 (58%), Positives = 674/921 (74%), Gaps = 68/921 (7%)

Query  57    VQAGETVNGGTLTNHDNQIVL--GTANGMTISTGLEYGPDNEANTGGQWIQNGGIANNTT  114
             V++G    G  + +++ Q +   G A G  ++TG E GP++E  ++GQ +  GG A++TT
Sbjct  161   VHGGGKAAGTIINQDGYQTIKHGGLATGTIVNTGAEGGPESENVSSGQMV--GGTAESTT  218

Query  115   VTGGGLQRVNAGGSVSDTVIsagggqslqgqaVNTTLNGGEQWVHEGGIATGTVINEKGW  174
             +   G Q + ++G   DT+I AGG+Q+++G+A NT L+GG+Q VH+GG AT T+IN  GW
Sbjct  219   INKNGRQVIWSSGMARDTLIYAGGDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGW  278

Query  175   QAVKSGAMATDTVVNTGAEGGPDAENGDTGQTVYGDAVRTTINKNGRQIVAAEGTANTTV  234
             Q +K G                            G A +TTIN++G+  V A G A+   
Sbjct  279   QVIKEG----------------------------GTAAHTTINQKGKLQVNAGGKASDVT  310

Query  235   VYAGGDQTVHGHALDTTLN--GGYQYVHNGGTASDTVVNSDGWQIIKEGGLADFTTVNQK  292
               +GG       A  T  N  G++  V+  G A + V++++G+  +  G  A  T V++ 
Sbjct  311   QNTGGALVTSTAATVTGTNRLGAFSVVE--GKADNVVLENGGRLDVLTGHTATNTRVDDG  368

Query  293   GKLQVNAGGTATNVTLTQGGALVTSTAATVTGSNRLGN-FTVENGNADGVVLESGGRLDV  351
             G L+V  GGTAT V++ +GG L++ ++A+V+G+   G+ F++  G+AD+++LE G+ + +
Sbjct  369   GTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEKGSSFTL  428

Query  352   LEGHSAWKTLVDDGGTLAVSAGGKATDVTMTSGGALIADSGATVEGTNASGKFSIDGISG  411
               G++A  T V++G  L  + GG  ++ T  + GA+++ SG TV+    + +   +G + 
Sbjct  429   NAGDTATDTTVNGG--LFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIR---EGDAL  483

Query  412   QASGLLLENG-------GSFTVNAGGLASNTTVGHRGTLTLAAGGSLSGRTQLSKGASMV  464
               +G L  NG       G++TV+   L+ ++   + GTLTL  + +++      +G+++ 
Sbjct  484   LQGGALTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDS-TVTTDVIAQRGTALK  542

Query  465   LNGDVVSTGDIVNAGEIRFDNQTT---PDAALSRAVAKG---DSPVTFH----------K  508
             L G  V  G I ++ ++ + + +T   PD A  ++V  +    + + F            
Sbjct  543   LTGSTVLNGAI-DPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPAT  601

Query  509   LTTSNLTGQGGTINMRVRLD-GSNASDQLVINGGQATGKTWLAFTNVGNSNLGVATSGQG  567
             L   NL GQ GTI++RVR D + N +D+LVI+GG+ATGKT L + N GNS  G+ATSG+G
Sbjct  602   LKVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKG  661

Query  568   IRVVDAQNGATTEEGAFALSRPLQAGAFNYTLNRDSDEDWYLRSENAYRAEVPLYASMLT  627
             I+VV+A NGATTEEGAF  +  LQAGAFNY+LNRDSDE WYLRSENAYRAEVPLYASMLT
Sbjct  662   IQVVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLT  721

Query  628   QAMDYDRILAGSRSHQSGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESNGSYGFVRL  687
             QAMDYDRILAGSRSHQ+GVSGENNSVRLSIQGGHLGHDNNGGIARGATPES+GSYGFVRL
Sbjct  722   QAMDYDRILAGSRSHQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRL  781

Query  688   EGDLLRTEVAGMSLTTGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLHLVHTSSGL  747
             EGDLLRTEVAGMS+T+GVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYL+L+H +SGL
Sbjct  782   EGDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASGL  841

Query  748   WADIVAQGTRHSMKASSDNNDFRARGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSL  807
             WADIVAQGTRHSMKASSDNNDFR RGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSL
Sbjct  842   WADIVAQGTRHSMKASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSL  901

Query  808   DDGQDNAGYVKFGHGSAQHVRAGFRLGSHNDMNFGKGTSSRDTLHDSAKHSVRELPVNWW  867
             DDGQDNA+YVKFGHGSAQHVRAGFRLGSH+DMNFGKGTSSRDTL++SAKHSVRELPVNWW
Sbjct  902   DDGQDNASYVKFGHGSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNWW  961

Query  868   VQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSRNGTSLDLQAGLEARVRENITLGVQAGYA  927
             VQPSVIRTFSSRGDMSMGTAAAGSNMTFSPS+NGTSLDLQAGLEARVRENITLGVQA+YA
Sbjct  962   VQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQASYA  1021

Query  928   HSVSGSSAEGYNGQATLNVTF  948
             HS++GSSAEGYN+QATLNVTF
Sbjct  1022  HSINGSSAEGYNSQATLNVTF  1042


 Score =  410 bits (1542),  Expect = 3e-115, Method: Compositional matrix adjust.
 Identities = 314/477 (66%), Positives = 393/477 (83%), Gaps = 6/477 (1%)

Query  1    MKRHLNTSYRLVWNHITGTLVVASELARSRGKgagvavalslaavtsvpalaaDTVVQAG  60
            MKRHLNT YRLVWNHITG++VVASELAR++GK +GVAVALSLAAVTS+P LAAD VV++G
Sbjct  3    MKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVHPG  62

Query  61   ETVNGGTLTNHDNQIVLGTANGMTISTGLEYGPDNEANTGGQWIQNGGIANNTTVTGGGL  120
            ETVNGGTL NHDNQ+V GTA+G+T+STGLE GPD++ NTGGQWI+ GG + NTTVT+ G 
Sbjct  63   ETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTANGR  122

Query  121  QRVNAGGSVSDTVIsagggqslqgqaVNTTLNG-GEQWVHEGGIATGTVINEKGWQAVKS  179
            Q V+AGG+ SDTVI  GGGQSL+G AVNTTL+  GEQWVH GG A+GT+IN+ G Q++K 
Sbjct  123  QIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTIKH  182

Query  180  GAMATDTVVNTGAEGGPDAENGDTGQTVYGDAVRTTINKNGRQIVAAEGTANTTVVYAGG  239
            G++AT+T+VNTGAEGGP++EN  +GQ V G A  TTINKNGRQ++ + G A  T++YAGG
Sbjct  183  GGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAGG  242

Query  240  DQTVHGHALDTTLNGGYQYVHNGGTASDTVVNSDGWQIIKEGGLADFTTVNQKGKLQVNA  299
            DQTVHG+A +T L+GG QYVHNGGTA++T++N DGWQ+IKEGG A  TT+NQKGKLQVNA
Sbjct  243  DQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQVNA  302

Query  300  GGTATNVTLTQGGALVTSTAATVTGSNRLGNFTVENGNADGVVLESGGRLDVLEGHSAWK  359
            GG A++VT   GGALVTSTAATVTG+NRLG F+V +G+AD VVLE+GGRLDVL GH+A +
Sbjct  303  GGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN  362

Query  360  TLVDDGGTLAVSAGGKATDVTMTSGGALIADSGATVEGTNASGK-FSIDGISGQASGLLL  418
            T VDDGGTL V  GG AT V+M +GG L+ADSGA+V GT + GK FSI+G  GQA +L+L
Sbjct  363  TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGG--GQADALML  420

Query  419  ENGGSFTVNAGGLASNTTVGHRGTLTLAAGGSLSGRTQLSKGASMVLNGDVVSTGDI  475
            E+G+SFT+NAG+ A++TTV   G L  A GG+L+G T L++GA + L+G  V+ + +
Sbjct  421  EKGSSFTLNAGDTATDTTV--NGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTL  475

36) flu2 in NC_009801


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score =  718 bits (2717),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 528/898 (59%), Positives = 660/898 (74%), Gaps = 66/898 (7%)

Query  78    GTANGMTISTGLEYGPDNEANTGGQWIQNGGIANNTTVTGGGLQRVNAGGSVSDTVIsag  137
             G A G  ++TG E GP++E  ++GQ +  GG A++TT+   G Q + ++G   DT+I AG
Sbjct  184   GLATGTIVNTGAEGGPESENVSSGQMV--GGTAESTTINKNGRQVIWSSGMARDTLIYAG  241

Query  138   ggqslqgqaVNTTLNGGEQWVHEGGIATGTVINEKGWQAVKSGAMATDTVVNTGAEGGPD  197
             G+Q+++G+A NT L+GG+Q VH+GG AT T+IN  GWQ +K G                 
Sbjct  242   GDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEG-----------------  284

Query  198   AENGDTGQFVRGNAVRTTINKNGRQIVAAEGTANTTVVYAGGDQTVHGHALDTTLN--GG  255
                        G A +TTIN++G+  V A G A+     +GG       A  T  N  G+
Sbjct  285   -----------GTAAHTTINQKGKLQVNAGGKASDVTQNTGGALVTSTAATVTGTNRLGA  333

Query  256   YQYVHNGGTASGTVVNSDGWQIIKEGGLADFTTVNQKGKLQVNAGGTATNVTLKQGGALV  315
             +  V+  G A   V++++G+  +  G  A  T V++ G L+V  GGTAT V++ +GG L+
Sbjct  334   FSVVE--GKADNVVLENGGRLDVLTGHTATNTRVDDGGTLDVRNGGTATTVSMGNGGVLL  391

Query  316   TSTAATVTGSNRLGN-FTVENGKADGVVLESGGRLDVLEGHSAWKTLVDDGGTLAVSAGG  374
             + ++A+V+G+   G+ F++  G+AD+++LE G+ + +  G++A  T V++G  L  + GG
Sbjct  392   ADSGAAVSGTRSDGKAFSIGGGQADALMLEKGSSFTLNAGDTATDTTVNGG--LFTARGG  449

Query  375   KATDVTMTSGGALIADSGATVEGTNASGKFSIDGTSGQASGLLLENG-------GSFTVN  427
               ++ T  + GA+++ SG TV+    + +   +G +   +G L  NG       G++TV+
Sbjct  450   TLAGTTTLNNGAILTLSGKTVNNDTLTIR---EGDALLQGGALTGNGSVEKSGSGTLTVS  506

Query  428   AGGLASNTTVGHRGTLTLAAGGSLSGRTQLSKGASMVLNGDVVSTGDIVNAGEIRFDNQT  487
                L+ ++   + GTLTL  + +++      +G+++ L G  V  G I ++ ++ + + +
Sbjct  507   NTTLTQKAVNLNEGTLTLNDS-TVTTDVIAQRGTALKLTGSTVLNGAI-DPTNVTLASGA  564

Query  488   T---PDAVLSRAVAKG---DSPVTFH----------KLTTSNLTGQGGTINMRVRLD-GS  530
             T   PD    ++V  +    + + F            L   NL GQ GTI++RVR D + 
Sbjct  565   TWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPATLKVKNLNGQNGTISLRVRPDMAQ  624

Query  531   NTSDQLVINGGQATGKTWLAFTNVGNSNLGVATSGQGIRVVDAQNGATTEEGAFALSRPL  590
             N +D+LVI+GG+ATGKT L + N GNS  G+ATSG+GI+VV+A NGATTEEGAF  +  L
Sbjct  625   NNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKGIQVVEAINGATTEEGAFIQGNKL  684

Query  591   QAGAFNYTLNRDSDEDWYLRSENAYRAEVPLYASMLTQAMDYDRILAGSRSHQTGVSGEN  650
             QAGAFNY+LNRDSDE WYLRSENAYRAEVPLYASMLTQAMDYDRILAGSRSHQTGVSGEN
Sbjct  685   QAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLTQAMDYDRILAGSRSHQTGVSGEN  744

Query  651   NSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEGDLLRTEVAGMSLTTGVYGAAG  710
             NSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEGDLLRTEVAGMS+T+GVYGAAG
Sbjct  745   NSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEGDLLRTEVAGMSVTAGVYGAAG  804

Query  711   HSSVDVKDDDGSRAGTARDDAGSLGGYLNLVHTSSGLWADIVAQGTRHSMKASSDNNDFR  770
             HSSVDVKDDDGSRAGT RDDAGSLGGYLNL+H +SGLWADIVAQGTRHSMKASSDNNDFR
Sbjct  805   HSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASGLWADIVAQGTRHSMKASSDNNDFR  864

Query  771   ARGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDDGQDNAGYVKFGHGSAQHVRAG  830
              RGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDDGQDNA+YVKFGHGSAQHVRAG
Sbjct  865   VRGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDDGQDNASYVKFGHGSAQHVRAG  924

Query  831   FRLGSHNDMNFGKGTSSRDTLRDSAKHSVRELPVNWWVQPSVIRTFSSRGDMSMGTAAAG  890
             FRLGSH+DMNFGKGTSSRDTLR+SAKHSVRELPVNWWVQPSVIRTFSSRGDMSMGTAAAG
Sbjct  925   FRLGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNWWVQPSVIRTFSSRGDMSMGTAAAG  984

Query  891   SNMTFSPSRNGTSLDLQAGLEARVRENITLGVQAGYAHSVSGSSAEGYNGQATLNVTF  948
             SNMTFSPS+NGTSLDLQAGLEARVRENITLGVQA+YAHS++GSSAEGYN+QATLNVTF
Sbjct  985   SNMTFSPSQNGTSLDLQAGLEARVRENITLGVQASYAHSINGSSAEGYNSQATLNVTF  1042


 Score =  444 bits (1672),  Expect = 2e-125, Method: Compositional matrix adjust.
 Identities = 314/477 (66%), Positives = 394/477 (83%), Gaps = 6/477 (1%)

Query  1    MKRHLNTSYRLVWNHITGTLVVASELARSRGKRAGVAIALSLAAVTSVPALAADTVVQAG  60
            MKRHLNT YRLVWNHITG++VVASELAR++GKR+GVA+ALSLAAVTS+P LAAD VV++G
Sbjct  3    MKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVHPG  62

Query  61   ETVNDGTLTNHDNQIVLGTANGMTISTGLEYGPDNEANTGGQWIQNGGIANNTTVTGGGL  120
            ETVN+GTL NHDNQ+V GTA+G+T+STGLE GPD++ NTGGQWI+ GG + NTTVT+ G 
Sbjct  63   ETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTANGR  122

Query  121  QRVNAGGSVSDTVIsagggqslqgqaVNTTLNG-GEQWVHEGGIATGTVINEKGWQAVKS  179
            Q V+AGG+ SDTVI  GGGQSL+G AVNTTL+  GEQWVH GG A+GT+IN+ G Q++K 
Sbjct  123  QIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTIKH  182

Query  180  GAMATDTVVNTGAEGGPDAENGDTGQFVRGNAVRTTINKNGRQIVAAEGTANTTVVYAGG  239
            G++AT+T+VNTGAEGGP++EN  +GQ V G A  TTINKNGRQ++ + G A  T++YAGG
Sbjct  183  GGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAGG  242

Query  240  DQTVHGHALDTTLNGGYQYVHNGGTASGTVVNSDGWQIIKEGGLADFTTVNQKGKLQVNA  299
            DQTVHG+A +T L+GG QYVHNGGTA+ T++N DGWQ+IKEGG A  TT+NQKGKLQVNA
Sbjct  243  DQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQVNA  302

Query  300  GGTATNVTLKQGGALVTSTAATVTGSNRLGNFTVENGKADGVVLESGGRLDVLEGHSAWK  359
            GG A++VT + GGALVTSTAATVTG+NRLG F+V +GKAD VVLE+GGRLDVL GH+A +
Sbjct  303  GGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN  362

Query  360  TLVDDGGTLAVSAGGKATDVTMTSGGALIADSGATVEGTNASGK-FSIDGTSGQASGLLL  418
            T VDDGGTL V  GG AT V+M +GG L+ADSGA+V GT + GK FSI+G  GQA +L+L
Sbjct  363  TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGG--GQADALML  420

Query  419  ENGGSFTVNAGGLASNTTVGHRGTLTLAAGGSLSGRTQLSKGASMVLNGDVVSTGDI  475
            E+G+SFT+NAG+ A++TTV   G L  A GG+L+G T L++GA + L+G  V+ + +
Sbjct  421  EKGSSFTLNAGDTATDTTV--NGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTL  475

37) flu_1 in NC_022370


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score =  716 bits (2707),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 526/919 (58%), Positives = 676/919 (74%), Gaps = 64/919 (6%)

Query  57    VQAGETVNGGTLTNHDNQIVL--GTANGMTISTGLEYGPDNEANTGGQWIQNGGIANNTT  114
             V++G    G  + +++ Q +   G A G  ++TG E GP++E  ++GQ +  GG A++TT
Sbjct  161   VHGGGKAAGTIINQDGYQTIKHGGLATGTIVNTGAEGGPESENVSSGQMV--GGTAESTT  218

Query  115   VTGGGLQRVNAGGSVSDTVIsagggqslqgqaVNTTLNGGEQWVHEGGIATGTVINEKGW  174
             +   G Q + ++G   DT+I AGG+Q+++G+A NT L+GG+Q VH+GG AT T+IN  GW
Sbjct  219   INKNGRQVIWSSGMARDTLIYAGGDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGW  278

Query  175   QAVKSGAMATDTVVNTGAEGGPDAENGDTGQTVYGDAVRTTINKNGRQIVAAEGTANTTV  234
             Q +K G                            G A +TTIN++G+  V A G A+   
Sbjct  279   QVIKEG----------------------------GTAAHTTINQKGKLQVNAGGKASDVT  310

Query  235   VYAGGDQTVHGHALDTTLN--GGYQYVHNGGTASDTVVNSDGWQIIKEGGLADFTTVNQK  292
               +GG       A  T  N  G++  V+  G A + V++++G+  +  G  A  T V++ 
Sbjct  311   QNTGGALVTSTAATVTGTNRLGAFSVVE--GKADNVVLENGGRLDVLTGHTATNTRVDDG  368

Query  293   GKLQVNAGGTATNVTLTQGGALVTSTAATVTGSNRLGN-FTVENGNADGVVLESGGRLDV  351
             G L+V  GGTAT V++ +GG L++ ++A+V+G+   G+ F++  G+AD+++LE G+ + +
Sbjct  369   GTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEKGSSFTL  428

Query  352   LEGHSAWKTLVDDGGTLAVSAGGKATDVTMTSGGALIADSGATVEGTNASGK-----FSI  406
               G++A  T V++G  L  + GG  ++ T  + GA+++ SG TV+    + +     +  
Sbjct  429   NAGDTATDTTVNGG--LFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREGDALLQG  486

Query  407   DGISGQASGLLLENGGSFTVNAGGLASNTTVGHRGTLTLAAGGSLSGRTQLSKGASMVLN  466
             ++++G++S +    +G++TV+   L+ ++   + GTLTL  + +++      +G+++ L 
Sbjct  487   GALTGNGS-VEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDS-TVTTDVIAQRGTALKLT  544

Query  467   GDVVSTGDIVNAGEIRFDNQTT---PDAALSRAVAKG---DSPVTFH----------KLT  510
             G  V  G I ++ ++ + + +T   PD A  ++V  +    + + F            L 
Sbjct  545   GSTVLNGAI-DPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPATLK  603

Query  511   TSNLTGQGGTINMRVRLD-GSNASDQLVINGGQATGKTWLAFTNVGNSNLGVATSGQGIR  569
               NL GQ GTI++RVR D + N +D+LVI+GG+ATGKT L + N GNS  G+ATSG+GI+
Sbjct  604   VKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKGIQ  663

Query  570   VVDAQNGATTEEGAFALSRPLQAGAFNYTLNRDSDEDWYLRSENAYRAEVPLYASMLTQA  629
             VV+A NGATTEEGAF  +  LQAGAFNY+LNRDSDE WYLRSENAYRAEVPLYASMLTQA
Sbjct  664   VVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLTQA  723

Query  630   MDYDRILAGSRSHQSGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESNGSYGFVRLEG  689
             MDYDRILAGSRSHQ+GVSGENNSVRLSIQGGHLGHDNNGGIARGATPES+GSYGFVRLEG
Sbjct  724   MDYDRILAGSRSHQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEG  783

Query  690   DLLRTEVAGMLLTTGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLHLVHTSSGLWA  749
             DLLRTEVAGM +T+GVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYL+L+H +SGLWA
Sbjct  784   DLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASGLWA  843

Query  750   DIVAQGTRHSMKASSDNNDFRARGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDD  809
             DIVAQGTRHSMKASSDNNDFR RGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDD
Sbjct  844   DIVAQGTRHSMKASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDD  903

Query  810   GQDNAGYVKFGHGSAQHVRAGFRLGSHNDMNFGKGTSSRDTLHDSAKHSVRELPVNWWVQ  869
             GQDNA+YVKFGHGSAQHVRAGFRLGSH+DMNFGKGTSSRDTL++SAKHSVRELPVNWWVQ
Sbjct  904   GQDNASYVKFGHGSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNWWVQ  963

Query  870   PSVIRTFSSRGDMSMGTAAAGSNMTFSPSRNGTSLDLQAGLEARVRENITLGVQAGYAHS  929
             PSVIRTFSSRGDMSMGTAAAGSNMTFSPS+NGTSLDLQAGLEARVRENITLGVQA+YAHS
Sbjct  964   PSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQASYAHS  1023

Query  930   VSGSSAEGYNGQATLNVTF  948
             ++GSSAEGYN+QATLNVTF
Sbjct  1024  INGSSAEGYNSQATLNVTF  1042


 Score =  410 bits (1541),  Expect = 3e-115, Method: Compositional matrix adjust.
 Identities = 314/477 (66%), Positives = 393/477 (83%), Gaps = 6/477 (1%)

Query  1    MKRHLNTSYRLVWNHITGTLVVASELARSRGKgagvavalslaavtsvpalaaDTVVQAG  60
            MKRHLNT YRLVWNHITG++VVASELAR++GK +GVAVALSLAAVTS+P LAAD VV++G
Sbjct  3    MKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVHPG  62

Query  61   ETVNGGTLTNHDNQIVLGTANGMTISTGLEYGPDNEANTGGQWIQNGGIANNTTVTGGGL  120
            ETVNGGTL NHDNQ+V GTA+G+T+STGLE GPD++ NTGGQWI+ GG + NTTVT+ G 
Sbjct  63   ETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTANGR  122

Query  121  QRVNAGGSVSDTVIsagggqslqgqaVNTTLNG-GEQWVHEGGIATGTVINEKGWQAVKS  179
            Q V+AGG+ SDTVI  GGGQSL+G AVNTTL+  GEQWVH GG A+GT+IN+ G Q++K 
Sbjct  123  QIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTIKH  182

Query  180  GAMATDTVVNTGAEGGPDAENGDTGQTVYGDAVRTTINKNGRQIVAAEGTANTTVVYAGG  239
            G++AT+T+VNTGAEGGP++EN  +GQ V G A  TTINKNGRQ++ + G A  T++YAGG
Sbjct  183  GGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAGG  242

Query  240  DQTVHGHALDTTLNGGYQYVHNGGTASDTVVNSDGWQIIKEGGLADFTTVNQKGKLQVNA  299
            DQTVHG+A +T L+GG QYVHNGGTA++T++N DGWQ+IKEGG A  TT+NQKGKLQVNA
Sbjct  243  DQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQVNA  302

Query  300  GGTATNVTLTQGGALVTSTAATVTGSNRLGNFTVENGNADGVVLESGGRLDVLEGHSAWK  359
            GG A++VT   GGALVTSTAATVTG+NRLG F+V +G+AD VVLE+GGRLDVL GH+A +
Sbjct  303  GGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN  362

Query  360  TLVDDGGTLAVSAGGKATDVTMTSGGALIADSGATVEGTNASGK-FSIDGISGQASGLLL  418
            T VDDGGTL V  GG AT V+M +GG L+ADSGA+V GT + GK FSI+G  GQA +L+L
Sbjct  363  TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGG--GQADALML  420

Query  419  ENGGSFTVNAGGLASNTTVGHRGTLTLAAGGSLSGRTQLSKGASMVLNGDVVSTGDI  475
            E+G+SFT+NAG+ A++TTV   G L  A GG+L+G T L++GA + L+G  V+ + +
Sbjct  421  EKGSSFTLNAGDTATDTTV--NGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTL  475

38) flu1 in NC_009801


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score =  712 bits (2694),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 529/921 (58%), Positives = 669/921 (73%), Gaps = 68/921 (7%)

Query  57    VQAGETVSGGTLTNHDNQIVF--GTANGMTISTGLEYGPDNEANTGGQWIQNGGIANNTT  114
             V++G   +G  + +++ Q +   G A G  ++TG E GP++E  ++GQ +  GG A++TT
Sbjct  161   VHGGGKAAGTIINQDGYQTIKHGGLATGTIVNTGAEGGPESENVSSGQMV--GGTAESTT  218

Query  115   VTGGGLQRVNAGGSVSDTVIsagggqslqgqaVNTTLNGGEQWVHEGGIATGTVINEKGW  174
             +   G Q + ++G   DT+I AGG+Q+++G+A NT L+GG+Q VH+GG AT T+IN  GW
Sbjct  219   INKNGRQVIWSSGMARDTLIYAGGDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGW  278

Query  175   QAVKSGAMATDTVVNTGAEGGPDAENGDTGQFVRGNAVRTTINENGRQIVAAEGTANTTV  234
             Q +K G                            G A +TTIN++G+  V A G A+   
Sbjct  279   QVIKEG----------------------------GTAAHTTINQKGKLQVNAGGKASDVT  310

Query  235   VYAGGDQTVHGHALDTTLN--GGYQYVHNGGTASDTVVNSDGWQIVKEGGLADFTTVNQK  292
               +GG       A  T  N  G++  V+  G A + V++++G+  V  G  A  T V++ 
Sbjct  311   QNTGGALVTSTAATVTGTNRLGAFSVVE--GKADNVVLENGGRLDVLTGHTATNTRVDDG  368

Query  293   GKLQVNAGGTATNVTLKQGGALVTSTAATVTGSNRLGN-FTVENGNADGVVLESGGRLDV  351
             G L+V  GGTAT V++ +GG L++ ++A+V+G+   G+ F++  G+AD+++LE G+ + +
Sbjct  369   GTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEKGSSFTL  428

Query  352   LEGHSAWKTLVDDGGTLAVSAGGKATDVTMTSGSALIADSGATVEGTNASGKFSIDGTSG  411
               G++A  T V+ GG ++  +G  A   T+ +G+ L   SG TV+    + +   +G + 
Sbjct  429   NAGDTATDTTVN-GGLFTARGGTLAGTTTLNNGAILTL-SGKTVNNDTLTIR---EGDAL  483

Query  412   QASGLLLENG-------GSFTVNAGGLASNTTVGHRGTLTLAAGGSLSGRTQLSKGASMV  464
               +G L  NG       G++TV+   L+ ++   + GTLTL  + +++      +G+++ 
Sbjct  484   LQGGALTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDS-TVTTDVIAQRGTALK  542

Query  465   LNGDVVSTGDIVNAGEIRFDNQTT---PDAALSRAVAKG---DSPVTFH----------K  508
             L G  V  G I ++ ++ + + +T   PD A  ++V  +    + + F            
Sbjct  543   LTGSTVLNGAI-DPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPAT  601

Query  509   LTTSNLTGQGGTINMRVRLD-GSNTSDQLVINGGQATGKTWLAFTNVGNSNLGVATSGQG  567
             L   NL GQ GTI++RVR D + N +D+LVI+GG+ATGKT L + N GNS  G+ATSG+G
Sbjct  602   LKVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKG  661

Query  568   IRVVDAQNGATTEEGAFALSRPLQAGAFNYTLNRDSDEDWYLRSENAYRAEVPLYTSMLT  627
             I+VV+A NGATTEEGAF  +  LQAGAFNY+LNRDSDE WYLRSENAYRAEVPLY+SMLT
Sbjct  662   IQVVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLT  721

Query  628   QAMDYDRILAGSRSHQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRL  687
             QAMDYDRILAGSRSHQTGV+GENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRL
Sbjct  722   QAMDYDRILAGSRSHQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRL  781

Query  688   EGDLLRTEVAGMSLTTGVHGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLTHTSSGL  747
             EGDLLRTEVAGMS+T+GV GAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNL H +SGL
Sbjct  782   EGDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASGL  841

Query  748   WADIVAQGTRHSMKASSDNNDFRARGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSL  807
             WADIVAQGTRHSMKASSDNNDFR RGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSL
Sbjct  842   WADIVAQGTRHSMKASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSL  901

Query  808   DDGQDNAGYVKFGHGSAQHVRAGFRLGSHNDMSFGEGTSSRDTLRDSAKHRVRELPVNWW  867
             DDGQDNA+YVKFGHGSAQHVRAGFRLGSH+DM+FG GTSSRDTLR+SAKH VRELPVNWW
Sbjct  902   DDGQDNASYVKFGHGSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNWW  961

Query  868   VQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSRNGTSLDLQAGLEARVRENITLGVQAGYA  927
             VQPSVIRTFSSRGDMSMGTAAAGSNMTFSPS+NGTSLDLQAGLEARVRENITLGVQA+YA
Sbjct  962   VQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQASYA  1021

Query  928   HSVSGSSAEGYNGQATLNVTF  948
             HS++GSSAEGYN+QATLNVTF
Sbjct  1022  HSINGSSAEGYNSQATLNVTF  1042


 Score =  413 bits (1556),  Expect = 2e-116, Method: Compositional matrix adjust.
 Identities = 312/477 (66%), Positives = 394/477 (83%), Gaps = 6/477 (1%)

Query  1    MKRHLNTSYRLVWNHITGTLVVASELARSRGKRTGvavalslaavtsvpvlaaDTVVQAG  60
            MKRHLNT YRLVWNHITG++VVASELAR++GKR GVAVALSLAAVTS+PVLAAD VV++G
Sbjct  3    MKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVHPG  62

Query  61   ETVSGGTLTNHDNQIVFGTANGMTISTGLEYGPDNEANTGGQWIQNGGIANNTTVTGGGL  120
            ETV+GGTL NHDNQ+V GTA+G+T+STGLE GPD++ NTGGQWI+ GG + NTTVT+ G 
Sbjct  63   ETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTANGR  122

Query  121  QRVNAGGSVSDTVIsagggqslqgqaVNTTLNG-GEQWVHEGGIATGTVINEKGWQAVKS  179
            Q V+AGG+ SDTVI  GGGQSL+G AVNTTL+  GEQWVH GG A+GT+IN+ G Q++K 
Sbjct  123  QIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTIKH  182

Query  180  GAMATDTVVNTGAEGGPDAENGDTGQFVRGNAVRTTINENGRQIVAAEGTANTTVVYAGG  239
            G++AT+T+VNTGAEGGP++EN  +GQ V G A  TTIN NGRQ++ + G A  T++YAGG
Sbjct  183  GGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAGG  242

Query  240  DQTVHGHALDTTLNGGYQYVHNGGTASDTVVNSDGWQIVKEGGLADFTTVNQKGKLQVNA  299
            DQTVHG+A +T L+GG QYVHNGGTA++T++N DGWQ++KEGG A  TT+NQKGKLQVNA
Sbjct  243  DQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQVNA  302

Query  300  GGTATNVTLKQGGALVTSTAATVTGSNRLGNFTVENGNADGVVLESGGRLDVLEGHSAWK  359
            GG A++VT + GGALVTSTAATVTG+NRLG F+V +G+AD VVLE+GGRLDVL GH+A +
Sbjct  303  GGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN  362

Query  360  TLVDDGGTLAVSAGGKATDVTMTSGSALIADSGATVEGTNASGK-FSIDGTSGQASGLLL  418
            T VDDGGTL V  GG AT V+M +G+ L+ADSGA+V GT + GK FSI+G  GQA +L+L
Sbjct  363  TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGG--GQADALML  420

Query  419  ENGGSFTVNAGGLASNTTVGHRGTLTLAAGGSLSGRTQLSKGASMVLNGDVVSTGDI  475
            E+G+SFT+NAG+ A++TTV   G L  A GG+L+G T L++GA + L+G  V+ + +
Sbjct  421  EKGSSFTLNAGDTATDTTV--NGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTL  475

39) ECS88_4891 in NC_011742


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score =  710 bits (2686),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 530/929 (58%), Positives = 678/929 (73%), Gaps = 84/929 (9%)

Query  82    VQAGETVNGGTLTNHDNQIVL--GTANGMTISSGLEYGPDNEANTGGQWIQNGGIANNTT  139
             V++G    G  + +++ Q +   G A G  +++G E GP++E  ++GQ +  GG A++TT
Sbjct  161   VHGGGKAAGTIINQDGYQTIKHGGLATGTIVNTGAEGGPESENVSSGQMV--GGTAESTT  218

Query  140   VTGGGLQRVNAGGSVSDTVIsagggqslqgqaVNTTLNGGEQWVHEGGIATGTVINEKGW  199
             +   G Q + ++G   DT+I AGG+Q+++G+A NT L+GG+Q VH+GG AT T+IN  GW
Sbjct  219   INKNGRQVIWSSGMARDTLIYAGGDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGW  278

Query  200   QAVKSGAMATDTVVNTGAEGGPDAENGDTGQFVRGNAVRTTINKNGRQIVAVEGTANTTV  259
             Q +K G                            G A +TTIN++G+  V   G A+   
Sbjct  279   QVIKEG----------------------------GTAAHTTINQKGKLQVNAGGKASDVT  310

Query  260   VYAGGDQTVHGHALDTTLN--GGYQYVHNGGTASDTVVNSDGWQIVKEGGLADFTTVNQK  317
               +GG       A  T  N  G++  V+  G A + V++++G+  V  G  A  T V++ 
Sbjct  311   QNTGGALVTSTAATVTGTNRLGAFSVVE--GKADNVVLENGGRLDVLTGHTATNTRVDDG  368

Query  318   GKLQVNAGGTATNVTLKQGGALVTSTAATVTGSNRLGN-FTVENGNADGVVLESGGRLDV  376
             G L+V  GGTAT V++ +GG L++ ++A+V+G+   G+ F++  G+AD+++LE G+ + +
Sbjct  369   GTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEKGSSFTL  428

Query  377   LEGHSAQKTRVDDG------GTLA----------VSAGGKATD---VTMTSGSALIADSG  417
               G++A  T V++G      GTLA          ++ +GK+ +   +T+  G AL+ +++
Sbjct  429   NAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREGDALLQGGA  488

Query  418   ATVEGT---NASGKFSIDGISGQASGLLLENGGSFTVNAGGQASNTTVGHRGT-LMLAAG  473
              T +G+   ++SG +++   +    ++ L++G ++T+N +  +++  +++RGT L L+++
Sbjct  489   LTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEG-TLTLNDSTVTTDV-IAQRGTALKLTGS  546

Query  474   GSLSGRTQ-----LSKGAS-MVLNGDVVST--GDIVNAGEIYFDNQTTPDAVLSRAVAKG  525
               L+G  +     L+ GA+  + +   V +  +D+ +AG+I F +  T   V        
Sbjct  547   TVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFV--------  598

Query  526   NAPVTFHKLTTSNLTGQGGTINMRVRLD-GSNASDQLVINGGQATGKTWLAFTNVGNSNL  584
               P T   L   NL GQ GTI++RVR D + N +D+LVI+GG+ATGKT L + N GNS  
Sbjct  599   --PAT---LKVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSAS  653

Query  585   GVATTGQGIRVVDAQNGATTEEGAFALSRPLQAGAFNYTLNRDSDEDWYLRSENAYRAEV  644
             G+AT+G+GI+VV+A NGATTEEGAF  +  LQAGAFNY+LNRDSDE WYLRSENAYRAEV
Sbjct  654   GLATSGKGIQVVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEV  713

Query  645   PLYASMLTQAMDYDRILAGSRSHQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESS  704
             PLYASMLTQAMDYDRILAGSRSHQTGV+GENNSVRLSIQGGHLGHDNNGGIARGATPESS
Sbjct  714   PLYASMLTQAMDYDRILAGSRSHQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESS  773

Query  705   GSYGFVRLEGDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLN  764
             GSYGFVRLEGDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLN
Sbjct  774   GSYGFVRLEGDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLN  833

Query  765   LTHTSSGLWADIVAQGTRHSMKASSDNNDFRARGWGWLGSLETGLPFSITDNLMLEPQLQ  824
             L H +SGLWADIVAQGTRHSMKASSDNNDFR RGWGWLGSLETGLPFSITDNLMLEPQLQ
Sbjct  834   LIHNASGLWADIVAQGTRHSMKASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQ  893

Query  825   YTWQGLSLDDGQDNAGYVKFGHGSAQHVRAGFRLGSHNDMTFGEGTSSRDTLRDSTKHRV  884
             YTWQGLSLDDGQDNA+YVKFGHGSAQHVRAGFRLGSH+DM FG GTSSRDTLR+S+KH V
Sbjct  894   YTWQGLSLDDGQDNASYVKFGHGSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSV  953

Query  885   SELPVNWWVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSRNGTSLDLQAGLEARVRENIT  944
              ELPVNWWVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPS+NGTSLDLQAGLEARVRENIT
Sbjct  954   RELPVNWWVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENIT  1013

Query  945   LGVQAGYAHSVSGSSAEGYNGQATLNVTF  973
             LGVQA+YAHS++GSSAEGYN+QATLNVTF
Sbjct  1014  LGVQASYAHSINGSSAEGYNSQATLNVTF  1042


 Score =  421 bits (1586),  Expect = 1e-118, Method: Compositional matrix adjust.
 Identities = 314/489 (65%), Positives = 400/489 (82%), Gaps = 7/489 (1%)

Query  24   KLMKRHLNTSYRLVWNHITGTLVVASELARSRGKRagvavvlslaavtsvpalaaDTVVQ  83
             LMKRHLNT YRLVWNHITG++VVASELAR++GKR+GVAV LSLAAVTS+P LAAD VV+
Sbjct  1    MLMKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVH  60

Query  84   AGETVNGGTLTNHDNQIVLGTANGMTISSGLEYGPDNEANTGGQWIQNGGIANNTTVTGG  143
            +GETVNGGTL NHDNQ+V GTA+G+T+S+GLE GPD++ NTGGQWI+ GG + NTTVT+ 
Sbjct  61   PGETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTAN  120

Query  144  GLQRVNAGGSVSDTVIsagggqslqgqaVNTTLNG-GEQWVHEGGIATGTVINEKGWQAV  202
            G Q V+AGG+ SDTVI  GGGQSL+G AVNTTL+  GEQWVH GG A+GT+IN+ G Q++
Sbjct  121  GRQIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTI  180

Query  203  KSGAMATDTVVNTGAEGGPDAENGDTGQFVRGNAVRTTINKNGRQIVAVEGTANTTVVYA  262
            K G++AT+T+VNTGAEGGP++EN  +GQ V G A  TTINKNGRQ++   G A  T++YA
Sbjct  181  KHGGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYA  240

Query  263  GGDQTVHGHALDTTLNGGYQYVHNGGTASDTVVNSDGWQIVKEGGLADFTTVNQKGKLQV  322
            GGDQTVHG+A +T L+GG QYVHNGGTA++T++N DGWQ++KEGG A  TT+NQKGKLQV
Sbjct  241  GGDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQV  300

Query  323  NAGGTATNVTLKQGGALVTSTAATVTGSNRLGNFTVENGNADGVVLESGGRLDVLEGHSA  382
            NAGG A++VT + GGALVTSTAATVTG+NRLG F+V +G+AD VVLE+GGRLDVL GH+A
Sbjct  301  NAGGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTA  360

Query  383  QKTRVDDGGTLAVSAGGKATDVTMTSGSALIADSGATVEGTNASGK-FSIDGISGQASGL  441
             +TRVDDGGTL V  GG AT V+M +G+ L+ADSGA+V GT + GK FSI+G  GQA +L
Sbjct  361  TNTRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGG--GQADAL  418

Query  442  LLENGGSFTVNAGGQASNTTVGHRGTLMLAAGGSLSGRTQLSKGASMVLNGDVVSTGDI-  500
            +LE+G+SFT+NAG+ A++TTV   G L  A GG+L+G T L++GA + L+G  V+ + + 
Sbjct  419  MLEKGSSFTLNAGDTATDTTV--NGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLT  476

Query  501  VNAGEIYFD  509
            +  G+  ++
Sbjct  477  IREGDALLQ  485

40) EC042_4803 in NC_017626


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score =  709 bits (2681),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 529/921 (58%), Positives = 669/921 (73%), Gaps = 68/921 (7%)

Query  82    VQAGETVSGGTLTNHDNQIVF--GTANGMTISTGLEYGPDNEANTGGQWIQNGGIANNTT  139
             V++G   +G  + +++ Q +   G A G  ++TG E GP++E  ++GQ +  GG A++TT
Sbjct  161   VHGGGKAAGTIINQDGYQTIKHGGLATGTIVNTGAEGGPESENVSSGQMV--GGTAESTT  218

Query  140   VTGGGLQRVNAGGSVSDTVIsagggqslqgqaVNTTLNGGEQWVHEGGIATGTVINEKGW  199
             +   G Q + ++G   DT+I AGG+Q+++G+A NT L+GG+Q VH+GG AT T+IN  GW
Sbjct  219   INKNGRQVIWSSGMARDTLIYAGGDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGW  278

Query  200   QAVKSGAMATDTVVNTGAEGGPDAENGDTGQFVRGNAVRTTINENGRQIVAAEGTANTTV  259
             Q +K G                            G A +TTIN++G+  V A G A+   
Sbjct  279   QVIKEG----------------------------GTAAHTTINQKGKLQVNAGGKASDVT  310

Query  260   VYAGGDQTVHGHALDTTLN--GGYQYVHNGGTASDTVVNSDGWQIVKEGGLADFTTVNQK  317
               +GG       A  T  N  G++  V+  G A + V++++G+  V  G  A  T V++ 
Sbjct  311   QNTGGALVTSTAATVTGTNRLGAFSVVE--GKADNVVLENGGRLDVLTGHTATNTRVDDG  368

Query  318   GKLQVNAGGTATNVTLKQGGALVTSTAATVTGSNRLGN-FTVENGNADGVVLESGGRLDV  376
             G L+V  GGTAT V++ +GG L++ ++A+V+G+   G+ F++  G+AD+++LE G+ + +
Sbjct  369   GTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEKGSSFTL  428

Query  377   LEGHSAWKTLVDDGGTLAVSAGGKATDVTMTSGSALIADSGATVEGTNASGKFSIDGTSG  436
               G++A  T V+ GG ++  +G  A   T+ +G+ L   SG TV+    + +   +G + 
Sbjct  429   NAGDTATDTTVN-GGLFTARGGTLAGTTTLNNGAILTL-SGKTVNNDTLTIR---EGDAL  483

Query  437   QASGLLLENG-------GSFTVNAGGLASNTTVGHRGTLTLAAGGSLSGRTQLSKGASMV  489
               +G L  NG       G++TV+   L+ ++   + GTLTL  + +++      +G+++ 
Sbjct  484   LQGGALTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDS-TVTTDVIAQRGTALK  542

Query  490   LNGDVVSTGDIVNAGEIRFDNQTT---PDAALSRAVAKG---DSPVTFH----------K  533
             L G  V  G I ++ ++ + + +T   PD A  ++V  +    + + F            
Sbjct  543   LTGSTVLNGAI-DPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPAT  601

Query  534   LTTSNLTGQGGTINMRVRLD-GSNTSDQLVINGGQATGKTWLAFTNVGNSNLGVATSGQG  592
             L   NL GQ GTI++RVR D + N +D+LVI+GG+ATGKT L + N GNS  G+ATSG+G
Sbjct  602   LKVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKG  661

Query  593   IRVVDAQNGATTEEGAFALSRPLQAGAFNYTLNRDSDEDWYLRSENAYRAEVPLYTSMLT  652
             I+VV+A NGATTEEGAF  +  LQAGAFNY+LNRDSDE WYLRSENAYRAEVPLY+SMLT
Sbjct  662   IQVVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLT  721

Query  653   QAMDYDRILAGSRSHQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRL  712
             QAMDYDRILAGSRSHQTGV+GENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRL
Sbjct  722   QAMDYDRILAGSRSHQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRL  781

Query  713   EGDLLRTEVAGMSLTTGVHGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLTHTSSGL  772
             EGDLLRTEVAGMS+T+GV GAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNL H +SGL
Sbjct  782   EGDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASGL  841

Query  773   WADIVAQGTRHSMKASSDNNDFRARGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSL  832
             WADIVAQGTRHSMKASSDNNDFR RGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSL
Sbjct  842   WADIVAQGTRHSMKASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSL  901

Query  833   DDGQDNAGYVKFGHGSAQHVRAGFRLGSHNDMSFGEGTSSRDTLRDSAKHRVRELPVNWW  892
             DDGQDNA+YVKFGHGSAQHVRAGFRLGSH+DM+FG GTSSRDTLR+SAKH VRELPVNWW
Sbjct  902   DDGQDNASYVKFGHGSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNWW  961

Query  893   VQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSRNGTSLDLQAGLEARVRENITLGVQAGYA  952
             VQPSVIRTFSSRGDMSMGTAAAGSNMTFSPS+NGTSLDLQAGLEARVRENITLGVQA+YA
Sbjct  962   VQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQASYA  1021

Query  953   HSVSGSSAEGYNGQATLNVTF  973
             HS++GSSAEGYN+QATLNVTF
Sbjct  1022  HSINGSSAEGYNSQATLNVTF  1042


 Score =  413 bits (1555),  Expect = 3e-116, Method: Compositional matrix adjust.
 Identities = 313/479 (66%), Positives = 395/479 (83%), Gaps = 6/479 (1%)

Query  24   KLMKRHLNTSYRLVWNHITGTLVVASELARSRGKRTGvavalslaavtsvpvlaaDTVVQ  83
             LMKRHLNT YRLVWNHITG++VVASELAR++GKR GVAVALSLAAVTS+PVLAAD VV+
Sbjct  1    MLMKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVH  60

Query  84   AGETVSGGTLTNHDNQIVFGTANGMTISTGLEYGPDNEANTGGQWIQNGGIANNTTVTGG  143
            +GETV+GGTL NHDNQ+V GTA+G+T+STGLE GPD++ NTGGQWI+ GG + NTTVT+ 
Sbjct  61   PGETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTAN  120

Query  144  GLQRVNAGGSVSDTVIsagggqslqgqaVNTTLNG-GEQWVHEGGIATGTVINEKGWQAV  202
            G Q V+AGG+ SDTVI  GGGQSL+G AVNTTL+  GEQWVH GG A+GT+IN+ G Q++
Sbjct  121  GRQIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTI  180

Query  203  KSGAMATDTVVNTGAEGGPDAENGDTGQFVRGNAVRTTINENGRQIVAAEGTANTTVVYA  262
            K G++AT+T+VNTGAEGGP++EN  +GQ V G A  TTIN NGRQ++ + G A  T++YA
Sbjct  181  KHGGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYA  240

Query  263  GGDQTVHGHALDTTLNGGYQYVHNGGTASDTVVNSDGWQIVKEGGLADFTTVNQKGKLQV  322
            GGDQTVHG+A +T L+GG QYVHNGGTA++T++N DGWQ++KEGG A  TT+NQKGKLQV
Sbjct  241  GGDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQV  300

Query  323  NAGGTATNVTLKQGGALVTSTAATVTGSNRLGNFTVENGNADGVVLESGGRLDVLEGHSA  382
            NAGG A++VT + GGALVTSTAATVTG+NRLG F+V +G+AD VVLE+GGRLDVL GH+A
Sbjct  301  NAGGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTA  360

Query  383  WKTLVDDGGTLAVSAGGKATDVTMTSGSALIADSGATVEGTNASGK-FSIDGTSGQASGL  441
             +T VDDGGTL V  GG AT V+M +G+ L+ADSGA+V GT + GK FSI+G  GQA +L
Sbjct  361  TNTRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGG--GQADAL  418

Query  442  LLENGGSFTVNAGGLASNTTVGHRGTLTLAAGGSLSGRTQLSKGASMVLNGDVVSTGDI  500
            +LE+G+SFT+NAG+ A++TTV   G L  A GG+L+G T L++GA + L+G  V+ + +
Sbjct  419  MLEKGSSFTLNAGDTATDTTV--NGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTL  475

41) ECP_3009 in NC_008253


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score =  709 bits (2683),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 525/907 (58%), Positives = 672/907 (75%), Gaps = 84/907 (9%)

Query  78    GTANGMTISTGLEYGPDNEANTGGQWIQNGGIANNTTVTGGGLQRVNAGGSVSDTVIsag  137
             G A G  ++TG E GP++E  ++GQ +  GG A++TT+   G Q + ++G   DT+I AG
Sbjct  184   GLATGTIVNTGAEGGPESENVSSGQMV--GGTAESTTINKNGRQVIWSSGMARDTLIYAG  241

Query  138   ggqslqgqaVNTTLNGGEQWVHEGGIATGTVINEKGWQAVKSGAMATDTVVNTGAEGGPD  197
             G+Q+++G+A NT L+GG+Q VH+GG AT T+IN  GWQ +K G                 
Sbjct  242   GDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEG-----------------  284

Query  198   AENGDTGQFVRGNAVRTTINENGRQIVAAEGTANTTVVYAGGDQTVHGYALDTTLNGGNQ  257
                        G A +TTIN++G+  V A G A+     +GG       +  +T+ G N+
Sbjct  285   -----------GTAAHTTINQKGKLQVNAGGKASDVTQNTGGALVT---STAATVTGTNR  330

Query  258   ---YVHNGGTASGTVVNSDGWQIVKEGGLADFTIVNQKGKLQVNAGGTATNVTLKQGGAL  314
                +    G A   V++++G+  V  G  A  T V++ G L+V  GGTAT V++ +GG L
Sbjct  331   LGAFSVVEGKADNVVLENGGRLDVLTGHTATNTRVDDGGTLDVRNGGTATTVSMGNGGVL  390

Query  315   VTSTAATVTGSNRLGN-FTVENGNADGVVLESGGRLDVLEGHSAWKTLVDDG------GT  367
             ++ ++A+V+G+   G+ F++  G+AD+++LE G+ + +  G++A  T V++G      GT
Sbjct  391   LADSGAAVSGTRSDGKAFSIGGGQADALMLEKGSSFTLNAGDTATDTTVNGGLFTARGGT  450

Query  368   LA----------VSAGGKATD---VTMTSGGALIADSGATVEGT---NASGKFSIDGISG  411
             LA          ++ +GK+ +   +T+  G+AL+ +++ T +G+   ++SG +++   + 
Sbjct  451   LAGTTTLNNGAILTLSGKTVNNDTLTIREGDALLQGGALTGNGSVEKSGSGTLTVSNTTL  510

Query  412   QASGLLLENGGSFTVNAGGQAGNTTVGHRGT-LTLAAGGSLSGRTQ-----LSKGAS-MV  464
                ++ L++G ++T+N +  + +  +++RGT L L+++  L+G  +     L+ GA+  +
Sbjct  511   TQKAVNLNEG-TLTLNDSTVTTDV-IAQRGTALKLTGSTVLNGAIDPTNVTLASGATWNI  568

Query  465   LNGDVVST--GDIVNAGEIHFDNQTTPDAALSRAVAKGDSPVTFHKLTTSNLTGQGGTIN  522
              +   V +  +D+ +AG+IHF +  T     ++ V+          L   NL GQ GTI+
Sbjct  569   PDNATVQSVVDDLSHAGQIHFTSTRT-----GKFVPA--------TLKVKNLNGQNGTIS  615

Query  523   MRVRLD-GSNTSDQLVINGGQATGKTWLAFTNVGNSNLGVATTGQGIRVVDAQNGATTEE  581
             +RVR D + N +D+LVI+GG+ATGKT L + N GNS  G+AT+G+GI+VV+A NGATTEE
Sbjct  616   LRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKGIQVVEAINGATTEE  675

Query  582   GAFALSRPLQAGAFNYTLNRDSDEDWYLRSENAYRAEVPLYASMLTQAMDYDRILAGSRS  641
             GAF  +  LQAGAFNY+LNRDSDE WYLRSENAYRAEVPLYASMLTQAMDYDRILAGSRS
Sbjct  676   GAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLTQAMDYDRILAGSRS  735

Query  642   HQTGVNGENNSFRLSIQGGHLGHVNNGGIARGATPESSGSYGLVRLEGDLLRTEVAGMSL  701
             HQTGV+GENNS RLSIQGGHLGH NNGGIARGATPESSGSYG+VRLEGDLLRTEVAGMS+
Sbjct  736   HQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEGDLLRTEVAGMSV  795

Query  702   TTGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLVHTSSGLWADIVAQGTRHSMK  761
             T+GVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNL+H +SGLWADIVAQGTRHSMK
Sbjct  796   TAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASGLWADIVAQGTRHSMK  855

Query  762   ASSDNNDFRARGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDDGQDNAGYVKFGH  821
             ASSDNNDFR RGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDDGQDNA+YVKFGH
Sbjct  856   ASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDDGQDNASYVKFGH  915

Query  822   GSAQHVRAGFRLGSHNDMNFGKGTSSRDTLRDSAKHSVRELPVNWWVQPSVIRTFSSRGD  881
             GSAQHVRAGFRLGSH+DMNFGKGTSSRDTLR+SAKHSVRELPVNWWVQPSVIRTFSSRGD
Sbjct  916   GSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNWWVQPSVIRTFSSRGD  975

Query  882   MSMGTAAAGSNMTFSPSQNGTTLDLQAGLEARVRENITLGVQAGYAHSVSGSSAEGYNGQ  941
             MSMGTAAAGSNMTFSPSQNGT+LDLQAGLEARVRENITLGVQA+YAHS++GSSAEGYN+Q
Sbjct  976   MSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQASYAHSINGSSAEGYNSQ  1035

Query  942   ATLNVTF  948
             ATLNVTF
Sbjct  1036  ATLNVTF  1042


 Score =  407 bits (1533),  Expect = 1e-114, Method: Compositional matrix adjust.
 Identities = 312/477 (66%), Positives = 391/477 (82%), Gaps = 6/477 (1%)

Query  1    MKRHLNTSYRLVWNHITGTLVVASELARSRGKRagvavalslaavtsvpalaaDTVVQAG  60
            MKRHLNT YRLVWNHITG++VVASELAR++GKR+GVAVALSLAAVTS+P LAAD VV++G
Sbjct  3    MKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVHPG  62

Query  61   ETVNDGTLTNHDNQIVLGTANGMTISTGLEYGPDNEANTGGQWIQNGGIANNTTVTGGGL  120
            ETVN+GTL NHDNQ+V GTA+G+T+STGLE GPD++ NTGGQWI+ GG + NTTVT+ G 
Sbjct  63   ETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTANGR  122

Query  121  QRVNAGGSVSDTVIsagggqslqgqaVNTTLNG-GEQWVHEGGIATGTVINEKGWQAVKS  179
            Q V+AGG+ SDTVI  GGGQSL+G AVNTTL+  GEQWVH GG A+GT+IN+ G Q++K 
Sbjct  123  QIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTIKH  182

Query  180  GAMATDTVVNTGAEGGPDAENGDTGQFVRGNAVRTTINENGRQIVAAEGTANTTVVYAGG  239
            G++AT+T+VNTGAEGGP++EN  +GQ V G A  TTIN NGRQ++ + G A  T++YAGG
Sbjct  183  GGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAGG  242

Query  240  DQTVHGYALDTTLNGGNQYVHNGGTASGTVVNSDGWQIVKEGGLADFTIVNQKGKLQVNA  299
            DQTVHG A +T L+GGNQYVHNGGTA+ T++N DGWQ++KEGG A  T +NQKGKLQVNA
Sbjct  243  DQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQVNA  302

Query  300  GGTATNVTLKQGGALVTSTAATVTGSNRLGNFTVENGNADGVVLESGGRLDVLEGHSAWK  359
            GG A++VT + GGALVTSTAATVTG+NRLG F+V +G+AD VVLE+GGRLDVL GH+A +
Sbjct  303  GGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN  362

Query  360  TLVDDGGTLAVSAGGKATDVTMTSGGALIADSGATVEGTNASGK-FSIDGISGQASGLLL  418
            T VDDGGTL V  GG AT V+M +GG L+ADSGA+V GT + GK FSI+G  GQA +L+L
Sbjct  363  TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGG--GQADALML  420

Query  419  ENGGSFTVNAGGQAGNTTVGHRGTLTLAAGGSLSGRTQLSKGASMVLNGDVVSTGDI  475
            E+G+SFT+NAG+ A +TTV   G L  A GG+L+G T L++GA + L+G  V+ + +
Sbjct  421  EKGSSFTLNAGDTATDTTV--NGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTL  475

42) ROD_49731 in NC_013716


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score =  707 bits (2674),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 498/836 (60%), Positives = 626/836 (75%), Gaps = 80/836 (9%)

Query  148   NTTLNGGEQWVHEGGIATGTVINEKGWQVVKPGAVATDTVVNTGAEGGPDAENGDTGQFV  207
             NT L+GG+Q VH+GG AT T+IN  GWQV+K G                           
Sbjct  252   NTRLEGGNQYVHNGGTATETLINRDGWQVIKEG---------------------------  284

Query  208   RGDAVRTTINENGRQIVAAEGTANTTVVYAGGDQTVHGHALDTTLN--GGYQYVHNGGTA  265
              G A +TTIN++G+  V A G A+     +GG       A  T  N  G++  V+  G A
Sbjct  285   -GTAAHTTINQKGKLQVNAGGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVE--GKA  341

Query  266   SGTVVNSDGWQIIKEGGLADFTTVNQKGKLQVNAGGTATNVTLKQGGALVTSTAATVTGS  325
                V++++G+  +  G  A  T V++ G L+V  GGTAT V++ +GG L++ ++A+V+G+
Sbjct  342   DNVVLENGGRLDVLTGHTATNTRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGT  401

Query  326   NRLGN-FTVENGNADGVVLESGGRLDVLEGHSAWKTLVDDG------GTLA---------  369
                G+ F++  G+AD+++LE G+ + +  G++A  T V++G      GTLA         
Sbjct  402   RSDGKAFSIGGGQADALMLEKGSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGA  461

Query  370   -VSAGGKATD---VTMTSGGALIADSGATVEGT---NASGKFSIDGISGQASGLLLENGG  422
              ++ +GK+ +   +T+  G+AL+ +++ T +G+   ++SG +++   +    ++ L++G 
Sbjct  462   ILTLSGKTVNNDTLTIREGDALLQGGALTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEG-  520

Query  423   SFTVNAGGQAGNTTVGHRGT-LTLAAGGSLSGRTQ-----LSKGAS-MVLNGDVVST--G  473
             ++T+N +  + +  +++RGT L L+++  L+G  +     L+ GA+  + +   V +  +
Sbjct  521   TLTLNDSTVTTDV-IAQRGTALKLTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVD  579

Query  474   DIVNAGEIHFDNQTTPDAALSRAVAKGDSPVTFHKLTTSNLTGQGGTINMRVRLD-GSNA  532
             D+ +AG+IHF +  T     ++ V+          L   NL GQ GTI++RVR D + N 
Sbjct  580   DLSHAGQIHFTSTRT-----GKFVPA--------TLKVKNLNGQNGTISLRVRPDMAQNN  626

Query  533   SDQLVINGGQATGKTWLAFTNVGNSNLGVATSGQGIRVVDAQNGATTEEGSFALSRPLQA  592
             +D+LVI+GG+ATGKT L + N GNS  G+ATSG+GI+VV+A NGATTEEG+F  +  LQA
Sbjct  627   ADRLVIDGGRATGKTILNLVNAGNSASGLATSGKGIQVVEAINGATTEEGAFIQGNKLQA  686

Query  593   GAFNYTLNRDRDEDWYLRSENAYRAEVPLYASMLTQAMDYDRILAGSRSHQTGVNGENNS  652
             GAFNY+LNRD DE WYLRSENAYRAEVPLYASMLTQAMDYDRILAGSRSHQTGV+GENNS
Sbjct  687   GAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLTQAMDYDRILAGSRSHQTGVSGENNS  746

Query  653   VRLSIQGGHLGHDNNGGIARGATPESNGSYGFVRLEGDLLRTEVAGMSVTAGVYGVAGHS  712
             VRLSIQGGHLGHDNNGGIARGATPES+GSYGFVRLEGDLLRTEVAGMSVTAGVYG AGHS
Sbjct  747   VRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEGDLLRTEVAGMSVTAGVYGAAGHS  806

Query  713   SVDVKDDDGSRAGTVRDDAGSLGGYLNLVHTSSGLWTDIVAQGTRHSMKASSDNNDFRAR  772
             SVDVKDDDGSRAGTVRDDAGSLGGYLNL+H +SGLW+DIVAQGTRHSMKASSDNNDFR R
Sbjct  807   SVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASGLWADIVAQGTRHSMKASSDNNDFRVR  866

Query  773   GWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDDGQDNAGYVKFGHGSAQHVRAGFR  832
             GWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDDGQDNA+YVKFGHGSAQHVRAGFR
Sbjct  867   GWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDDGQDNASYVKFGHGSAQHVRAGFR  926

Query  833   LGSHNDMNFGKGTSSRDTLRDSAKHSVRELPVNWWVQPSVIRTFSSRGNMSMGTAAAGSN  892
             LGSH+DMNFGKGTSSRDTLR+SAKHSVRELPVNWWVQPSVIRTFSSRG+MSMGTAAAGSN
Sbjct  927   LGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNWWVQPSVIRTFSSRGDMSMGTAAAGSN  986

Query  893   MTFSPSRNGTTLDLQAGLEARVRENITLGVQAGYAHSVSGSSAEGYNGQATLNVTF  948
             MTFSPS+NGT+LDLQAGLEARVRENITLGVQA+YAHS++GSSAEGYN+QATLNVTF
Sbjct  987   MTFSPSQNGTSLDLQAGLEARVRENITLGVQASYAHSINGSSAEGYNSQATLNVTF  1042


 Score =  420 bits (1582),  Expect = 2e-118, Method: Compositional matrix adjust.
 Identities = 310/477 (65%), Positives = 390/477 (82%), Gaps = 6/477 (1%)

Query  1    MKRHLNTSYRLVWNHITGTLVVASELARSRGKRTGVAVALSFAAVTSVPALAADTVVQAG  60
            MKRHLNT YRLVWNHITG++VVASELAR++GKR GVAVALS+AAVTS+P LAAD VV++G
Sbjct  3    MKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVHPG  62

Query  61   ETVSGGTLANHDNQIVFGTTNEMTISTGLEYGPDNEANTGGQWIQnggtannttvtgggL  120
            ETV+GGTL NHDNQ+V GT++ +T+STGLE GPD++ NTGGQWI+ GGT+ NTTVT+ G 
Sbjct  63   ETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTANGR  122

Query  121  QRVNAGGSVSDTVIsagggqslqgqalNTTLNG-GEQWVHEGGIATGTVINEKGWQVVKP  179
            Q V+AGG+ SDTVI  GGGQSL+G A+NTTL+  GEQWVH GG A+GT+IN+ G Q +K 
Sbjct  123  QIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTIKH  182

Query  180  GAVATDTVVNTGAEGGPDAENGDTGQFVRGDAVRTTINENGRQIVAAEGTANTTVVYAGG  239
            G++AT+T+VNTGAEGGP++EN  +GQ V G A  TTIN NGRQ++ + G A  T++YAGG
Sbjct  183  GGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAGG  242

Query  240  DQTVHGHALDTTLNGGYQYVHNGGTASGTVVNSDGWQIIKEGGLADFTTVNQKGKLQVNA  299
            DQTVHG+A +T L+GG QYVHNGGTA+ T++N DGWQ+IKEGG A  TT+NQKGKLQVNA
Sbjct  243  DQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQVNA  302

Query  300  GGTATNVTLKQGGALVTSTAATVTGSNRLGNFTVENGNADGVVLESGGRLDVLEGHSAWK  359
            GG A++VT + GGALVTSTAATVTG+NRLG F+V +G+AD VVLE+GGRLDVL GH+A +
Sbjct  303  GGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN  362

Query  360  TLVDDGGTLAVSAGGKATDVTMTSGGALIADSGATVEGTNASGK-FSIDGISGQASGLLL  418
            T VDDGGTL V  GG AT V+M +GG L+ADSGA+V GT + GK FSI+G  GQA +L+L
Sbjct  363  TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGG--GQADALML  420

Query  419  ENGGSFTVNAGGQAGNTTVGHRGTLTLAAGGSLSGRTQLSKGASMVLNGDVVSTGDI  475
            E+G+SFT+NAG+ A +TTV   G L  A GG+L+G T L++GA + L+G  V+ + +
Sbjct  421  EKGSSFTLNAGDTATDTTV--NGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTL  475

43) flu in NC_012967


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score =  707 bits (2675),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 526/921 (58%), Positives = 676/921 (74%), Gaps = 68/921 (7%)

Query  57    VQAGETVNGGTLTNHDNQIVF--GATNGMTISTGLEYGPDNEANTGGQWVQDGGTASNTT  114
             V++G    G  + +++ Q +   G + G  ++TG E GP++E  ++GQ V  GGTA +TT
Sbjct  161   VHGGGKAAGTIINQDGYQTIKHGGLATGTIVNTGAEGGPESENVSSGQMV--GGTAESTT  218

Query  115   ISSGGLQFVGAGGKATDTIINEGGGQSLKGLALNTTLNGGEQWMHEGAIATGTVINDKGW  174
             I+  G Q + ++G A DT+I  GG+Q++ G A NT L+GG+Q +H+G+ AT T+IN  GW
Sbjct  219   INKNGRQVIWSSGMARDTLIYAGGDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGW  278

Query  175   QVVKPGAVATDTVVNTGAEGGPDVENGDTGQFVRGNAVRTTINENGRQIVAAEGTANTTV  234
             QV+K G                            G A +TTIN++G+  V A G A+   
Sbjct  279   QVIKEG----------------------------GTAAHTTINQKGKLQVNAGGKASDVT  310

Query  235   VYAGGDQTVHGHALDTTLN--GGYQYVHNGGTASDTVVNSDGWQIIKEGGLANFTTVNQK  292
               +GG       A  T  N  G++  V+  G A + V++++G+  +  G  A  T V++ 
Sbjct  311   QNTGGALVTSTAATVTGTNRLGAFSVVE--GKADNVVLENGGRLDVLTGHTATNTRVDDG  368

Query  293   GKLQVNAGGTATNVTLKQGGVLVTSTAATVTGSNRLGN-FAVENGKADGVVLESGGRLDV  351
             G L+V  GGTAT V++ +GGVL++ ++A+V+G+   G+ F++  G+AD+++LE G+ + +
Sbjct  369   GTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEKGSSFTL  428

Query  352   LESHSAQNTLVDDGGTLAVSAGGQATGVTMTSGGALIADSGATVEGTNASGK-----FSI  406
               +++A +T V++G  L  + GG  +G T  + GA+++ SG TV+    + +     +  
Sbjct  429   NAGDTATDTTVNGG--LFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREGDALLQG  486

Query  407   DGISGQASGLLLENGGSFTVNVGGQA-SNTTVG-HRGTLTLAAGGSLSGRTQLSKGASMV  464
             ++++G++S   +E++GS T+ V+  + ++ +V  + GTLTL  + +++      +G+++ 
Sbjct  487   GALTGNGS---VEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDS-TVTTDVIAQRGTALK  542

Query  465   LNGDVVSTGDIVNAGEIRFDNQTT----QDAALSRAVAKSNSPVTFH------------K  508
             L G  V  G I ++ ++ + + +T    ++A++   V   + +  +H             
Sbjct  543   LTGSTVLNGAI-DPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPAT  601

Query  509   ltttnltgqggtINMRVSLD-GSNASDQLVINGGQATGKTWLAFTNVGNSNLGVATSGQG  567
             L   NL GQ GTI++RV  D + N +D+LVI+GG+ATGKT L + N GNS  G+ATSG+G
Sbjct  602   LKVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKG  661

Query  568   IRVVDAQNGATTEEGAFALSRPLQAGAFNYTLNRDSDEDWYLRSENAYRAEVPLYTSMLT  627
             I+VV+A NGATTEEGAF  +  LQAGAFNY+LNRDSDE WYLRSENAYRAEVPLY+SMLT
Sbjct  662   IQVVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLT  721

Query  628   QAMDYDRILAGSRSHQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRL  687
             QAMDYDRILAGSRSHQTGV+GENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRL
Sbjct  722   QAMDYDRILAGSRSHQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRL  781

Query  688   EGDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLTHTSSGL  747
             EGDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNL H +SGL
Sbjct  782   EGDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASGL  841

Query  748   WADIVAQGTRHSMKASSDNNDFRARGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSL  807
             WADIVAQGTRHSMKASSDNNDFR RGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSL
Sbjct  842   WADIVAQGTRHSMKASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSL  901

Query  808   DDGQDNAGYVKFGHGSTQHVRAGFRLGSHNDMTFGEGTSSRDTLRDSTKHRVSELPVNWW  867
             DDGQDNA+YVKFGHGS+QHVRAGFRLGSH+DM FG GTSSRDTLR+S+KH V ELPVNWW
Sbjct  902   DDGQDNASYVKFGHGSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNWW  961

Query  868   VQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSRNGTSLDLQAGLEARVRENITLGVQAGYA  927
             VQPSVIRTFSSRGDMSMGTAAAGSNMTFSPS+NGTSLDLQAGLEARVRENITLGVQA+YA
Sbjct  962   VQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQASYA  1021

Query  928   HSVSGSSAEGYNGQATLNVTF  948
             HS++GSSAEGYN+QATLNVTF
Sbjct  1022  HSINGSSAEGYNSQATLNVTF  1042


 Score =  429 bits (1615),  Expect = 5e-121, Method: Compositional matrix adjust.
 Identities = 306/477 (65%), Positives = 393/477 (83%), Gaps = 6/477 (1%)

Query  1    MKRHLNTSYRLVWNHITGTLVVASELARSRGKRagvavalslaavtsvpalaaDTVVQAG  60
            MKRHLNT YRLVWNHITG++VVASELAR++GKR+GVAVALSLAAVTS+P LAAD VV++G
Sbjct  3    MKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVHPG  62

Query  61   ETVNGGTLTNHDNQIVFGATNGMTISTGLEYGPDNEANTGGQWVQDGGTASNTTISSGGL  120
            ETVNGGTL NHDNQ+V G+++G+T+STGLE GPD++ NTGGQW++ GGT+ NTT+++ G 
Sbjct  63   ETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTANGR  122

Query  121  QFVGAGGKATDTIINEGGGQSLKGLALNTTLNG-GEQWMHEGAIATGTVINDKGWQVVKP  179
            Q+V AGG A+DT+I +GGGQSL+GLA+NTTL+  GEQW+H G+ A+GT+IN+ G Q +K 
Sbjct  123  QIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTIKH  182

Query  180  GAVATDTVVNTGAEGGPDVENGDTGQFVRGNAVRTTINENGRQIVAAEGTANTTVVYAGG  239
            G++AT+T+VNTGAEGGP+ EN  +GQ V G A  TTIN NGRQ++ + G A  T++YAGG
Sbjct  183  GGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAGG  242

Query  240  DQTVHGHALDTTLNGGYQYVHNGGTASDTVVNSDGWQIIKEGGLANFTTVNQKGKLQVNA  299
            DQTVHG+A +T L+GG QYVHNGGTA++T++N DGWQ+IKEGG A  TT+NQKGKLQVNA
Sbjct  243  DQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQVNA  302

Query  300  GGTATNVTLKQGGVLVTSTAATVTGSNRLGNFAVENGKADGVVLESGGRLDVLESHSAQN  359
            GG A++VT + GG LVTSTAATVTG+NRLG F+V +GKAD VVLE+GGRLDVL +H+A N
Sbjct  303  GGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN  362

Query  360  TLVDDGGTLAVSAGGQATGVTMTSGGALIADSGATVEGTNASGK-FSIDGISGQASGLLL  418
            T VDDGGTL V  GG AT V+M +GG L+ADSGA+V GT + GK FSI+G  GQA +L+L
Sbjct  363  TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGG--GQADALML  420

Query  419  ENGGSFTVNVGGQASNTTVGHRGTLTLAAGGSLSGRTQLSKGASMVLNGDVVSTGDI  475
            E+G+SFT+N G+ A++TTV   G L  A GG+L+G T L++GA + L+G  V+ + +
Sbjct  421  EKGSSFTLNAGDTATDTTV--NGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTL  475

44) ECH74115_1395 in NC_011353


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score =  705 bits (2667),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 529/907 (59%), Positives = 674/907 (75%), Gaps = 83/907 (9%)

Query  78    GTANGMTISTGLELGPDSEENTGGQWIQNGGIAGNTTVTTNGRQVVLEGGTASDTVIRDG  137
             G A G  ++TG E GP+SE+ ++GQ    GG A +TT+  NGRQV+  +G A DT+I  G
Sbjct  184   GLATGTIVNTGAEGGPESENVSSGQ--MVGGTAESTTINKNGRQVIWSSGMARDTLIYAG  241

Query  138   GGQSLNGLAVNTTLNNRGEQWVHEGGVATGTIINRDGYQSVKSGGLATGTIINTGAEGGP  197
             G+Q+++G A NT L+  G+Q VH+GG AT T+INRDG Q +K GG               
Sbjct  242   GDQTVHGEAHNTRLEG-GNQYVHNGGTATETLINRDGWQVIKEGG---------------  285

Query  198   DSDNSYTGQKVQGTAESTTINKNGRQIILFSGLARDTLIYAGGDQSVHGRALNTTLN--G  255
                          TA  TTIN++G+  +  +G A D    +GG       A  T  N  G
Sbjct  286   -------------TAAHTTINQKGKLQVNAGGKASDVTQNTGGALVTSTAATVTGTNRLG  332

Query  256   GYQYVHRDGLALNTVINEGGWQVVKAGGAAGNTTINQNGELRVHAGGEATAVTQNTGGAL  315
             ++  V  +G A N V+++GG+  V +G +A NT +++ G L V+ GG AT+V+   GG L
Sbjct  333   AFSVV--EGKADNVVLENGGRLDVLTGHTATNTRVDDGGTLDVRNGGTATTVSMGNGGVL  390

Query  316   VTSTAATVIGTNRLGN-FTVENGKADGVVLESGGRLDVLESHSAQNTLVDDG------GT  368
             ++ ++A+V GT   G+ F++  G+AD+++LE G+ + +  +++A +T V++G      GT
Sbjct  391   LADSGAAVSGTRSDGKAFSIGGGQADALMLEKGSSFTLNAGDTATDTTVNGGLFTARGGT  450

Query  369   LA----------VSAGGKAT---SVTITSGGALIADSGATVEGT---NASGKFSIDGTSG  412
             LA          ++ +GK+    ++TI  G+AL+ +++ T +G+   ++SG +++  T+ 
Sbjct  451   LAGTTTLNNGAILTLSGKTVNNDTLTIREGDALLQGGALTGNGSVEKSGSGTLTVSNTTL  510

Query  413   QASGLLLENGGSFTVNAGGQAGNTTVGHRGT-LTLAAGGSLSGRTQ-----LSKGAS-MV  465
                ++ L++G ++T+N +  + +  +++RGT L L+++  L+G  +     L+ GA+  +
Sbjct  511   TQKAVNLNEG-TLTLNDSTVTTDV-IAQRGTALKLTGSTVLNGAIDPTNVTLASGATWNI  568

Query  466   LNGDVVST--GDIVNAGEIRFDNQTTPNAALSRAVAKSNSPVTFHKltttnltgqggtIN  523
              +   V +  +D+ +AG+I+F   +T  + +  A  K ++           L GQ GTI+
Sbjct  569   PDNATVQSVVDDLSHAGQIHFT--STRTGKFVPATLKVKN-----------LNGQNGTIS  615

Query  524   MRVRLD-GSNASDQLVINGGQATGKTWLAFTNVGNSNLGVATTGQGIRVVDAQNGATTEE  582
             +RVR D + N +D+LVI+GG+ATGKT L + N GNS  G+AT+G+GI+VV+A NGATTEE
Sbjct  616   LRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKGIQVVEAINGATTEE  675

Query  583   GAFALSRPLQAGAFNYTLNRDSDEDWYLRSENAYRAEVPLYTSMLTQAMDYDRILAGSRS  642
             GAF  +  LQAGAFNY+LNRDSDE WYLRSENAYRAEVPLY+SMLTQAMDYDRILAGSRS
Sbjct  676   GAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLTQAMDYDRILAGSRS  735

Query  643   HQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEGDLLRTEVAGMSL  702
             HQTGV+GENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEGDLLRTEVAGMS+
Sbjct  736   HQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEGDLLRTEVAGMSV  795

Query  703   TTGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLVHTSSGLWADIVAQGTRHSMK  762
             T+GVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNL+H +SGLWADIVAQGTRHSMK
Sbjct  796   TAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASGLWADIVAQGTRHSMK  855

Query  763   ASSDNNDFRARGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDDGQDNAGYVKFGH  822
             ASSDNNDFR RGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDDGQDNA+YVKFGH
Sbjct  856   ASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDDGQDNASYVKFGH  915

Query  823   GSAQHVRAGFRLGSHNDMTFGEGTSSRDTLRDSAKHSVSELPVNWWVQPSVIRTFSSRGD  882
             GSAQHVRAGFRLGSH+DM FG GTSSRDTLR+SAKHSV ELPVNWWVQPSVIRTFSSRGD
Sbjct  916   GSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNWWVQPSVIRTFSSRGD  975

Query  883   MSMGTAAAGSNMTFSPSRNGTSLDLQAGLEARIRENITLGVQAGYAHSVSGSSAEGYNGQ  942
             MSMGTAAAGSNMTFSPS+NGTSLDLQAGLEAR+RENITLGVQA+YAHS++GSSAEGYN+Q
Sbjct  976   MSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQASYAHSINGSSAEGYNSQ  1035

Query  943   ATLNMTF  949
             ATLN+TF
Sbjct  1036  ATLNVTF  1042


 Score =  470 bits (1770),  Expect = 2e-133, Method: Compositional matrix adjust.
 Identities = 337/477 (71%), Positives = 409/477 (86%), Gaps = 5/477 (1%)

Query  1    MKRHLNTSYRLVWNHITGTLVVASELARSRGKRagvavalslaavtsvpalaaDKVVQAG  60
            MKRHLNT YRLVWNHITG++VVASELAR++GKR+GVAVALSLAAVTS+P LAAD VV++G
Sbjct  3    MKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVHPG  62

Query  61   ETVNDGTLTNHDNQIVFGTANGMTISTGLELGPDSEENTGGQWIQNGGIAGNTTVTTNGR  120
            ETVN+GTL NHDNQ+V GTA+G+T+STGLELGPDS+ENTGGQWI+ GG + NTTVT+NGR
Sbjct  63   ETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTANGR  122

Query  121  QVVLEGGTASDTVIRDGGGQSLNGLAVNTTLNNRGEQWVHEGGVATGTIINRDGYQSVKS  180
            Q+V  GGTASDTVIRDGGGQSLNGLAVNTTL+NRGEQWVH GG A+GTIIN+DGYQ++K 
Sbjct  123  QIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTIKH  182

Query  181  GGLATGTIINTGAEGGPDSDNSYTGQKVQGTAESTTINKNGRQIILFSGLARDTLIYAGG  240
            GGLATGTI+NTGAEGGP+S+N  +GQ V GTAESTTINKNGRQ+I  SG+ARDTLIYAGG
Sbjct  183  GGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAGG  242

Query  241  DQSVHGRALNTTLNGGYQYVHRDGLALNTVINEGGWQVVKAGGAAGNTTINQNGELRVHA  300
            DQ+VHG A NT L+GG QYVH +G A +T+IN +GWQV+K GG+A++TTINQ+G L+V+A
Sbjct  243  DQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQVNA  302

Query  301  GGEATAVTQNTGGALVTSTAATVIGTNRLGNFTVENGKADGVVLESGGRLDVLESHSAQN  360
            GG A+ VTQNTGGALVTSTAATV GTNRLG F+V +GKAD VVLE+GGRLDVL +H+A N
Sbjct  303  GGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN  362

Query  361  TLVDDGGTLAVSAGGKATSVTITSGGALIADSGATVEGTNASGK-FSIDGTSGQASGLLL  419
            T VDDGGTL V  GG AT+V++ +GG L+ADSGA+V GT + GK FSI+G  GQA +L+L
Sbjct  363  TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGG--GQADALML  420

Query  420  ENGGSFTVNAGGQAGNTTVGHRGTLTLAAGGSLSGRTQLSKGASMVLNGDVVSTGDI  476
            E+G+SFT+NAG+ A +TTV   G L  A GG+L+G T L++GA + L+G  V+ + +
Sbjct  421  EKGSSFTLNAGDTATDTTV--NGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTL  475

45) ECs1396 in NC_002695


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score =  705 bits (2667),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 529/907 (59%), Positives = 674/907 (75%), Gaps = 83/907 (9%)

Query  78    GTANGMTISTGLELGPDSEENTGGQWIQNGGIAGNTTVTTNGRQVVLEGGTASDTVIRDG  137
             G A G  ++TG E GP+SE+ ++GQ    GG A +TT+  NGRQV+  +G A DT+I  G
Sbjct  184   GLATGTIVNTGAEGGPESENVSSGQ--MVGGTAESTTINKNGRQVIWSSGMARDTLIYAG  241

Query  138   GGQSLNGLAVNTTLNNRGEQWVHEGGVATGTIINRDGYQSVKSGGLATGTIINTGAEGGP  197
             G+Q+++G A NT L+  G+Q VH+GG AT T+INRDG Q +K GG               
Sbjct  242   GDQTVHGEAHNTRLEG-GNQYVHNGGTATETLINRDGWQVIKEGG---------------  285

Query  198   DSDNSYTGQKVQGTAESTTINKNGRQIILFSGLARDTLIYAGGDQSVHGRALNTTLN--G  255
                          TA  TTIN++G+  +  +G A D    +GG       A  T  N  G
Sbjct  286   -------------TAAHTTINQKGKLQVNAGGKASDVTQNTGGALVTSTAATVTGTNRLG  332

Query  256   GYQYVHRDGLALNTVINEGGWQVVKAGGAAGNTTINQNGELRVHAGGEATAVTQNTGGAL  315
             ++  V  +G A N V+++GG+  V +G +A NT +++ G L V+ GG AT+V+   GG L
Sbjct  333   AFSVV--EGKADNVVLENGGRLDVLTGHTATNTRVDDGGTLDVRNGGTATTVSMGNGGVL  390

Query  316   VTSTAATVIGTNRLGN-FTVENGKADGVVLESGGRLDVLESHSAQNTLVDDG------GT  368
             ++ ++A+V GT   G+ F++  G+AD+++LE G+ + +  +++A +T V++G      GT
Sbjct  391   LADSGAAVSGTRSDGKAFSIGGGQADALMLEKGSSFTLNAGDTATDTTVNGGLFTARGGT  450

Query  369   LA----------VSAGGKAT---SVTITSGGALIADSGATVEGT---NASGKFSIDGTSG  412
             LA          ++ +GK+    ++TI  G+AL+ +++ T +G+   ++SG +++  T+ 
Sbjct  451   LAGTTTLNNGAILTLSGKTVNNDTLTIREGDALLQGGALTGNGSVEKSGSGTLTVSNTTL  510

Query  413   QASGLLLENGGSFTVNAGGQAGNTTVGHRGT-LTLAAGGSLSGRTQ-----LSKGAS-MV  465
                ++ L++G ++T+N +  + +  +++RGT L L+++  L+G  +     L+ GA+  +
Sbjct  511   TQKAVNLNEG-TLTLNDSTVTTDV-IAQRGTALKLTGSTVLNGAIDPTNVTLASGATWNI  568

Query  466   LNGDVVST--GDIVNAGEIRFDNQTTPNAALSRAVAKSNSPVTFHKltttnltgqggtIN  523
              +   V +  +D+ +AG+I+F   +T  + +  A  K ++           L GQ GTI+
Sbjct  569   PDNATVQSVVDDLSHAGQIHFT--STRTGKFVPATLKVKN-----------LNGQNGTIS  615

Query  524   MRVRLD-GSNASDQLVINGGQATGKTWLAFTNVGNSNLGVATTGQGIRVVDAQNGATTEE  582
             +RVR D + N +D+LVI+GG+ATGKT L + N GNS  G+AT+G+GI+VV+A NGATTEE
Sbjct  616   LRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKGIQVVEAINGATTEE  675

Query  583   GAFALSRPLQAGAFNYTLNRDSDEDWYLRSENAYRAEVPLYTSMLTQAMDYDRILAGSRS  642
             GAF  +  LQAGAFNY+LNRDSDE WYLRSENAYRAEVPLY+SMLTQAMDYDRILAGSRS
Sbjct  676   GAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLTQAMDYDRILAGSRS  735

Query  643   HQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEGDLLRTEVAGMSL  702
             HQTGV+GENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEGDLLRTEVAGMS+
Sbjct  736   HQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEGDLLRTEVAGMSV  795

Query  703   TTGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLVHTSSGLWADIVAQGTRHSMK  762
             T+GVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNL+H +SGLWADIVAQGTRHSMK
Sbjct  796   TAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASGLWADIVAQGTRHSMK  855

Query  763   ASSDNNDFRARGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDDGQDNAGYVKFGH  822
             ASSDNNDFR RGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDDGQDNA+YVKFGH
Sbjct  856   ASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDDGQDNASYVKFGH  915

Query  823   GSAQHVRAGFRLGSHNDMTFGEGTSSRDTLRDSAKHSVSELPVNWWVQPSVIRTFSSRGD  882
             GSAQHVRAGFRLGSH+DM FG GTSSRDTLR+SAKHSV ELPVNWWVQPSVIRTFSSRGD
Sbjct  916   GSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNWWVQPSVIRTFSSRGD  975

Query  883   MSMGTAAAGSNMTFSPSRNGTSLDLQAGLEARIRENITLGVQAGYAHSVSGSSAEGYNGQ  942
             MSMGTAAAGSNMTFSPS+NGTSLDLQAGLEAR+RENITLGVQA+YAHS++GSSAEGYN+Q
Sbjct  976   MSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQASYAHSINGSSAEGYNSQ  1035

Query  943   ATLNMTF  949
             ATLN+TF
Sbjct  1036  ATLNVTF  1042


 Score =  470 bits (1770),  Expect = 2e-133, Method: Compositional matrix adjust.
 Identities = 337/477 (71%), Positives = 409/477 (86%), Gaps = 5/477 (1%)

Query  1    MKRHLNTSYRLVWNHITGTLVVASELARSRGKRagvavalslaavtsvpalaaDKVVQAG  60
            MKRHLNT YRLVWNHITG++VVASELAR++GKR+GVAVALSLAAVTS+P LAAD VV++G
Sbjct  3    MKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVHPG  62

Query  61   ETVNDGTLTNHDNQIVFGTANGMTISTGLELGPDSEENTGGQWIQNGGIAGNTTVTTNGR  120
            ETVN+GTL NHDNQ+V GTA+G+T+STGLELGPDS+ENTGGQWI+ GG + NTTVT+NGR
Sbjct  63   ETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTANGR  122

Query  121  QVVLEGGTASDTVIRDGGGQSLNGLAVNTTLNNRGEQWVHEGGVATGTIINRDGYQSVKS  180
            Q+V  GGTASDTVIRDGGGQSLNGLAVNTTL+NRGEQWVH GG A+GTIIN+DGYQ++K 
Sbjct  123  QIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTIKH  182

Query  181  GGLATGTIINTGAEGGPDSDNSYTGQKVQGTAESTTINKNGRQIILFSGLARDTLIYAGG  240
            GGLATGTI+NTGAEGGP+S+N  +GQ V GTAESTTINKNGRQ+I  SG+ARDTLIYAGG
Sbjct  183  GGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAGG  242

Query  241  DQSVHGRALNTTLNGGYQYVHRDGLALNTVINEGGWQVVKAGGAAGNTTINQNGELRVHA  300
            DQ+VHG A NT L+GG QYVH +G A +T+IN +GWQV+K GG+A++TTINQ+G L+V+A
Sbjct  243  DQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQVNA  302

Query  301  GGEATAVTQNTGGALVTSTAATVIGTNRLGNFTVENGKADGVVLESGGRLDVLESHSAQN  360
            GG A+ VTQNTGGALVTSTAATV GTNRLG F+V +GKAD VVLE+GGRLDVL +H+A N
Sbjct  303  GGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN  362

Query  361  TLVDDGGTLAVSAGGKATSVTITSGGALIADSGATVEGTNASGK-FSIDGTSGQASGLLL  419
            T VDDGGTL V  GG AT+V++ +GG L+ADSGA+V GT + GK FSI+G  GQA +L+L
Sbjct  363  TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGG--GQADALML  420

Query  420  ENGGSFTVNAGGQAGNTTVGHRGTLTLAAGGSLSGRTQLSKGASMVLNGDVVSTGDI  476
            E+G+SFT+NAG+ A +TTV   G L  A GG+L+G T L++GA + L+G  V+ + +
Sbjct  421  EKGSSFTLNAGDTATDTTV--NGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTL  475

46) cah in NC_013008


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score =  705 bits (2667),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 529/907 (59%), Positives = 674/907 (75%), Gaps = 83/907 (9%)

Query  78    GTANGMTISTGLELGPDSEENTGGQWIQNGGIAGNTTVTTNGRQVVLEGGTASDTVIRDG  137
             G A G  ++TG E GP+SE+ ++GQ    GG A +TT+  NGRQV+  +G A DT+I  G
Sbjct  184   GLATGTIVNTGAEGGPESENVSSGQ--MVGGTAESTTINKNGRQVIWSSGMARDTLIYAG  241

Query  138   GGQSLNGLAVNTTLNNRGEQWVHEGGVATGTIINRDGYQSVKSGGLATGTIINTGAEGGP  197
             G+Q+++G A NT L+  G+Q VH+GG AT T+INRDG Q +K GG               
Sbjct  242   GDQTVHGEAHNTRLEG-GNQYVHNGGTATETLINRDGWQVIKEGG---------------  285

Query  198   DSDNSYTGQKVQGTAESTTINKNGRQIILFSGLARDTLIYAGGDQSVHGRALNTTLN--G  255
                          TA  TTIN++G+  +  +G A D    +GG       A  T  N  G
Sbjct  286   -------------TAAHTTINQKGKLQVNAGGKASDVTQNTGGALVTSTAATVTGTNRLG  332

Query  256   GYQYVHRDGLALNTVINEGGWQVVKAGGAAGNTTINQNGELRVHAGGEATAVTQNTGGAL  315
             ++  V  +G A N V+++GG+  V +G +A NT +++ G L V+ GG AT+V+   GG L
Sbjct  333   AFSVV--EGKADNVVLENGGRLDVLTGHTATNTRVDDGGTLDVRNGGTATTVSMGNGGVL  390

Query  316   VTSTAATVIGTNRLGN-FTVENGKADGVVLESGGRLDVLESHSAQNTLVDDG------GT  368
             ++ ++A+V GT   G+ F++  G+AD+++LE G+ + +  +++A +T V++G      GT
Sbjct  391   LADSGAAVSGTRSDGKAFSIGGGQADALMLEKGSSFTLNAGDTATDTTVNGGLFTARGGT  450

Query  369   LA----------VSAGGKAT---SVTITSGGALIADSGATVEGT---NASGKFSIDGTSG  412
             LA          ++ +GK+    ++TI  G+AL+ +++ T +G+   ++SG +++  T+ 
Sbjct  451   LAGTTTLNNGAILTLSGKTVNNDTLTIREGDALLQGGALTGNGSVEKSGSGTLTVSNTTL  510

Query  413   QASGLLLENGGSFTVNAGGQAGNTTVGHRGT-LTLAAGGSLSGRTQ-----LSKGAS-MV  465
                ++ L++G ++T+N +  + +  +++RGT L L+++  L+G  +     L+ GA+  +
Sbjct  511   TQKAVNLNEG-TLTLNDSTVTTDV-IAQRGTALKLTGSTVLNGAIDPTNVTLASGATWNI  568

Query  466   LNGDVVST--GDIVNAGEIRFDNQTTPNAALSRAVAKSNSPVTFHKltttnltgqggtIN  523
              +   V +  +D+ +AG+I+F   +T  + +  A  K ++           L GQ GTI+
Sbjct  569   PDNATVQSVVDDLSHAGQIHFT--STRTGKFVPATLKVKN-----------LNGQNGTIS  615

Query  524   MRVRLD-GSNASDQLVINGGQATGKTWLAFTNVGNSNLGVATTGQGIRVVDAQNGATTEE  582
             +RVR D + N +D+LVI+GG+ATGKT L + N GNS  G+AT+G+GI+VV+A NGATTEE
Sbjct  616   LRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKGIQVVEAINGATTEE  675

Query  583   GAFALSRPLQAGAFNYTLNRDSDEDWYLRSENAYRAEVPLYTSMLTQAMDYDRILAGSRS  642
             GAF  +  LQAGAFNY+LNRDSDE WYLRSENAYRAEVPLY+SMLTQAMDYDRILAGSRS
Sbjct  676   GAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLTQAMDYDRILAGSRS  735

Query  643   HQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEGDLLRTEVAGMSL  702
             HQTGV+GENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEGDLLRTEVAGMS+
Sbjct  736   HQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEGDLLRTEVAGMSV  795

Query  703   TTGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLVHTSSGLWADIVAQGTRHSMK  762
             T+GVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNL+H +SGLWADIVAQGTRHSMK
Sbjct  796   TAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASGLWADIVAQGTRHSMK  855

Query  763   ASSDNNDFRARGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDDGQDNAGYVKFGH  822
             ASSDNNDFR RGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDDGQDNA+YVKFGH
Sbjct  856   ASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDDGQDNASYVKFGH  915

Query  823   GSAQHVRAGFRLGSHNDMTFGEGTSSRDTLRDSAKHSVSELPVNWWVQPSVIRTFSSRGD  882
             GSAQHVRAGFRLGSH+DM FG GTSSRDTLR+SAKHSV ELPVNWWVQPSVIRTFSSRGD
Sbjct  916   GSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNWWVQPSVIRTFSSRGD  975

Query  883   MSMGTAAAGSNMTFSPSRNGTSLDLQAGLEARIRENITLGVQAGYAHSVSGSSAEGYNGQ  942
             MSMGTAAAGSNMTFSPS+NGTSLDLQAGLEAR+RENITLGVQA+YAHS++GSSAEGYN+Q
Sbjct  976   MSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQASYAHSINGSSAEGYNSQ  1035

Query  943   ATLNMTF  949
             ATLN+TF
Sbjct  1036  ATLNVTF  1042


 Score =  470 bits (1770),  Expect = 2e-133, Method: Compositional matrix adjust.
 Identities = 337/477 (71%), Positives = 409/477 (86%), Gaps = 5/477 (1%)

Query  1    MKRHLNTSYRLVWNHITGTLVVASELARSRGKRagvavalslaavtsvpalaaDKVVQAG  60
            MKRHLNT YRLVWNHITG++VVASELAR++GKR+GVAVALSLAAVTS+P LAAD VV++G
Sbjct  3    MKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVHPG  62

Query  61   ETVNDGTLTNHDNQIVFGTANGMTISTGLELGPDSEENTGGQWIQNGGIAGNTTVTTNGR  120
            ETVN+GTL NHDNQ+V GTA+G+T+STGLELGPDS+ENTGGQWI+ GG + NTTVT+NGR
Sbjct  63   ETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTANGR  122

Query  121  QVVLEGGTASDTVIRDGGGQSLNGLAVNTTLNNRGEQWVHEGGVATGTIINRDGYQSVKS  180
            Q+V  GGTASDTVIRDGGGQSLNGLAVNTTL+NRGEQWVH GG A+GTIIN+DGYQ++K 
Sbjct  123  QIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTIKH  182

Query  181  GGLATGTIINTGAEGGPDSDNSYTGQKVQGTAESTTINKNGRQIILFSGLARDTLIYAGG  240
            GGLATGTI+NTGAEGGP+S+N  +GQ V GTAESTTINKNGRQ+I  SG+ARDTLIYAGG
Sbjct  183  GGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAGG  242

Query  241  DQSVHGRALNTTLNGGYQYVHRDGLALNTVINEGGWQVVKAGGAAGNTTINQNGELRVHA  300
            DQ+VHG A NT L+GG QYVH +G A +T+IN +GWQV+K GG+A++TTINQ+G L+V+A
Sbjct  243  DQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQVNA  302

Query  301  GGEATAVTQNTGGALVTSTAATVIGTNRLGNFTVENGKADGVVLESGGRLDVLESHSAQN  360
            GG A+ VTQNTGGALVTSTAATV GTNRLG F+V +GKAD VVLE+GGRLDVL +H+A N
Sbjct  303  GGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN  362

Query  361  TLVDDGGTLAVSAGGKATSVTITSGGALIADSGATVEGTNASGK-FSIDGTSGQASGLLL  419
            T VDDGGTL V  GG AT+V++ +GG L+ADSGA+V GT + GK FSI+G  GQA +L+L
Sbjct  363  TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGG--GQADALML  420

Query  420  ENGGSFTVNAGGQAGNTTVGHRGTLTLAAGGSLSGRTQLSKGASMVLNGDVVSTGDI  476
            E+G+SFT+NAG+ A +TTV   G L  A GG+L+G T L++GA + L+G  V+ + +
Sbjct  421  EKGSSFTLNAGDTATDTTV--NGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTL  475

47) UMNK88_1274 in NC_017641


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score =  705 bits (2667),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 529/907 (59%), Positives = 674/907 (75%), Gaps = 83/907 (9%)

Query  78    GTANGMTISTGLELGPDSEENTGGQWIQNGGIAGNTTVTTNGRQVVLEGGTASDTVIRDG  137
             G A G  ++TG E GP+SE+ ++GQ    GG A +TT+  NGRQV+  +G A DT+I  G
Sbjct  184   GLATGTIVNTGAEGGPESENVSSGQ--MVGGTAESTTINKNGRQVIWSSGMARDTLIYAG  241

Query  138   GGQSLNGLAVNTTLNNRGEQWVHEGGVATGTIINRDGYQSVKSGGLATGTIINTGAEGGP  197
             G+Q+++G A NT L+  G+Q VH+GG AT T+INRDG Q +K GG               
Sbjct  242   GDQTVHGEAHNTRLEG-GNQYVHNGGTATETLINRDGWQVIKEGG---------------  285

Query  198   DSDNSYTGQKVQGTAESTTINKNGRQIILFSGLARDTLIYAGGDQSVHGRALNTTLN--G  255
                          TA  TTIN++G+  +  +G A D    +GG       A  T  N  G
Sbjct  286   -------------TAAHTTINQKGKLQVNAGGKASDVTQNTGGALVTSTAATVTGTNRLG  332

Query  256   GYQYVHRDGLALNTVINEGGWQVVKAGGAAGNTTINQNGELRVHAGGEATAVTQNTGGAL  315
             ++  V  +G A N V+++GG+  V +G +A NT +++ G L V+ GG AT+V+   GG L
Sbjct  333   AFSVV--EGKADNVVLENGGRLDVLTGHTATNTRVDDGGTLDVRNGGTATTVSMGNGGVL  390

Query  316   VTSTAATVIGTNRLGN-FTVENGKADGVVLESGGRLDVLESHSAQNTLVDDG------GT  368
             ++ ++A+V GT   G+ F++  G+AD+++LE G+ + +  +++A +T V++G      GT
Sbjct  391   LADSGAAVSGTRSDGKAFSIGGGQADALMLEKGSSFTLNAGDTATDTTVNGGLFTARGGT  450

Query  369   LA----------VSAGGKAT---SVTITSGGALIADSGATVEGT---NASGKFSIDGTSG  412
             LA          ++ +GK+    ++TI  G+AL+ +++ T +G+   ++SG +++  T+ 
Sbjct  451   LAGTTTLNNGAILTLSGKTVNNDTLTIREGDALLQGGALTGNGSVEKSGSGTLTVSNTTL  510

Query  413   QASGLLLENGGSFTVNAGGQAGNTTVGHRGT-LTLAAGGSLSGRTQ-----LSKGAS-MV  465
                ++ L++G ++T+N +  + +  +++RGT L L+++  L+G  +     L+ GA+  +
Sbjct  511   TQKAVNLNEG-TLTLNDSTVTTDV-IAQRGTALKLTGSTVLNGAIDPTNVTLASGATWNI  568

Query  466   LNGDVVST--GDIVNAGEIRFDNQTTPNAALSRAVAKSNSPVTFHKltttnltgqggtIN  523
              +   V +  +D+ +AG+I+F   +T  + +  A  K ++           L GQ GTI+
Sbjct  569   PDNATVQSVVDDLSHAGQIHFT--STRTGKFVPATLKVKN-----------LNGQNGTIS  615

Query  524   MRVRLD-GSNASDQLVINGGQATGKTWLAFTNVGNSNLGVATTGQGIRVVDAQNGATTEE  582
             +RVR D + N +D+LVI+GG+ATGKT L + N GNS  G+AT+G+GI+VV+A NGATTEE
Sbjct  616   LRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKGIQVVEAINGATTEE  675

Query  583   GAFALSRPLQAGAFNYTLNRDSDEDWYLRSENAYRAEVPLYTSMLTQAMDYDRILAGSRS  642
             GAF  +  LQAGAFNY+LNRDSDE WYLRSENAYRAEVPLY+SMLTQAMDYDRILAGSRS
Sbjct  676   GAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLTQAMDYDRILAGSRS  735

Query  643   HQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEGDLLRTEVAGMSL  702
             HQTGV+GENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEGDLLRTEVAGMS+
Sbjct  736   HQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEGDLLRTEVAGMSV  795

Query  703   TTGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLVHTSSGLWADIVAQGTRHSMK  762
             T+GVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNL+H +SGLWADIVAQGTRHSMK
Sbjct  796   TAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASGLWADIVAQGTRHSMK  855

Query  763   ASSDNNDFRARGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDDGQDNAGYVKFGH  822
             ASSDNNDFR RGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDDGQDNA+YVKFGH
Sbjct  856   ASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDDGQDNASYVKFGH  915

Query  823   GSAQHVRAGFRLGSHNDMTFGEGTSSRDTLRDSAKHSVSELPVNWWVQPSVIRTFSSRGD  882
             GSAQHVRAGFRLGSH+DM FG GTSSRDTLR+SAKHSV ELPVNWWVQPSVIRTFSSRGD
Sbjct  916   GSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNWWVQPSVIRTFSSRGD  975

Query  883   MSMGTAAAGSNMTFSPSRNGTSLDLQAGLEARIRENITLGVQAGYAHSVSGSSAEGYNGQ  942
             MSMGTAAAGSNMTFSPS+NGTSLDLQAGLEAR+RENITLGVQA+YAHS++GSSAEGYN+Q
Sbjct  976   MSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQASYAHSINGSSAEGYNSQ  1035

Query  943   ATLNMTF  949
             ATLN+TF
Sbjct  1036  ATLNVTF  1042


 Score =  470 bits (1770),  Expect = 2e-133, Method: Compositional matrix adjust.
 Identities = 337/477 (71%), Positives = 409/477 (86%), Gaps = 5/477 (1%)

Query  1    MKRHLNTSYRLVWNHITGTLVVASELARSRGKRagvavalslaavtsvpalaaDKVVQAG  60
            MKRHLNT YRLVWNHITG++VVASELAR++GKR+GVAVALSLAAVTS+P LAAD VV++G
Sbjct  3    MKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVHPG  62

Query  61   ETVNDGTLTNHDNQIVFGTANGMTISTGLELGPDSEENTGGQWIQNGGIAGNTTVTTNGR  120
            ETVN+GTL NHDNQ+V GTA+G+T+STGLELGPDS+ENTGGQWI+ GG + NTTVT+NGR
Sbjct  63   ETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTANGR  122

Query  121  QVVLEGGTASDTVIRDGGGQSLNGLAVNTTLNNRGEQWVHEGGVATGTIINRDGYQSVKS  180
            Q+V  GGTASDTVIRDGGGQSLNGLAVNTTL+NRGEQWVH GG A+GTIIN+DGYQ++K 
Sbjct  123  QIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTIKH  182

Query  181  GGLATGTIINTGAEGGPDSDNSYTGQKVQGTAESTTINKNGRQIILFSGLARDTLIYAGG  240
            GGLATGTI+NTGAEGGP+S+N  +GQ V GTAESTTINKNGRQ+I  SG+ARDTLIYAGG
Sbjct  183  GGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAGG  242

Query  241  DQSVHGRALNTTLNGGYQYVHRDGLALNTVINEGGWQVVKAGGAAGNTTINQNGELRVHA  300
            DQ+VHG A NT L+GG QYVH +G A +T+IN +GWQV+K GG+A++TTINQ+G L+V+A
Sbjct  243  DQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQVNA  302

Query  301  GGEATAVTQNTGGALVTSTAATVIGTNRLGNFTVENGKADGVVLESGGRLDVLESHSAQN  360
            GG A+ VTQNTGGALVTSTAATV GTNRLG F+V +GKAD VVLE+GGRLDVL +H+A N
Sbjct  303  GGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN  362

Query  361  TLVDDGGTLAVSAGGKATSVTITSGGALIADSGATVEGTNASGK-FSIDGTSGQASGLLL  419
            T VDDGGTL V  GG AT+V++ +GG L+ADSGA+V GT + GK FSI+G  GQA +L+L
Sbjct  363  TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGG--GQADALML  420

Query  420  ENGGSFTVNAGGQAGNTTVGHRGTLTLAAGGSLSGRTQLSKGASMVLNGDVVSTGDI  476
            E+G+SFT+NAG+ A +TTV   G L  A GG+L+G T L++GA + L+G  V+ + +
Sbjct  421  EKGSSFTLNAGDTATDTTV--NGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTL  475

48) CDCO157_1332 in NC_017906


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score =  705 bits (2667),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 529/907 (59%), Positives = 674/907 (75%), Gaps = 83/907 (9%)

Query  78    GTANGMTISTGLELGPDSEENTGGQWIQNGGIAGNTTVTTNGRQVVLEGGTASDTVIRDG  137
             G A G  ++TG E GP+SE+ ++GQ    GG A +TT+  NGRQV+  +G A DT+I  G
Sbjct  184   GLATGTIVNTGAEGGPESENVSSGQ--MVGGTAESTTINKNGRQVIWSSGMARDTLIYAG  241

Query  138   GGQSLNGLAVNTTLNNRGEQWVHEGGVATGTIINRDGYQSVKSGGLATGTIINTGAEGGP  197
             G+Q+++G A NT L+  G+Q VH+GG AT T+INRDG Q +K GG               
Sbjct  242   GDQTVHGEAHNTRLEG-GNQYVHNGGTATETLINRDGWQVIKEGG---------------  285

Query  198   DSDNSYTGQKVQGTAESTTINKNGRQIILFSGLARDTLIYAGGDQSVHGRALNTTLN--G  255
                          TA  TTIN++G+  +  +G A D    +GG       A  T  N  G
Sbjct  286   -------------TAAHTTINQKGKLQVNAGGKASDVTQNTGGALVTSTAATVTGTNRLG  332

Query  256   GYQYVHRDGLALNTVINEGGWQVVKAGGAAGNTTINQNGELRVHAGGEATAVTQNTGGAL  315
             ++  V  +G A N V+++GG+  V +G +A NT +++ G L V+ GG AT+V+   GG L
Sbjct  333   AFSVV--EGKADNVVLENGGRLDVLTGHTATNTRVDDGGTLDVRNGGTATTVSMGNGGVL  390

Query  316   VTSTAATVIGTNRLGN-FTVENGKADGVVLESGGRLDVLESHSAQNTLVDDG------GT  368
             ++ ++A+V GT   G+ F++  G+AD+++LE G+ + +  +++A +T V++G      GT
Sbjct  391   LADSGAAVSGTRSDGKAFSIGGGQADALMLEKGSSFTLNAGDTATDTTVNGGLFTARGGT  450

Query  369   LA----------VSAGGKAT---SVTITSGGALIADSGATVEGT---NASGKFSIDGTSG  412
             LA          ++ +GK+    ++TI  G+AL+ +++ T +G+   ++SG +++  T+ 
Sbjct  451   LAGTTTLNNGAILTLSGKTVNNDTLTIREGDALLQGGALTGNGSVEKSGSGTLTVSNTTL  510

Query  413   QASGLLLENGGSFTVNAGGQAGNTTVGHRGT-LTLAAGGSLSGRTQ-----LSKGAS-MV  465
                ++ L++G ++T+N +  + +  +++RGT L L+++  L+G  +     L+ GA+  +
Sbjct  511   TQKAVNLNEG-TLTLNDSTVTTDV-IAQRGTALKLTGSTVLNGAIDPTNVTLASGATWNI  568

Query  466   LNGDVVST--GDIVNAGEIRFDNQTTPNAALSRAVAKSNSPVTFHKltttnltgqggtIN  523
              +   V +  +D+ +AG+I+F   +T  + +  A  K ++           L GQ GTI+
Sbjct  569   PDNATVQSVVDDLSHAGQIHFT--STRTGKFVPATLKVKN-----------LNGQNGTIS  615

Query  524   MRVRLD-GSNASDQLVINGGQATGKTWLAFTNVGNSNLGVATTGQGIRVVDAQNGATTEE  582
             +RVR D + N +D+LVI+GG+ATGKT L + N GNS  G+AT+G+GI+VV+A NGATTEE
Sbjct  616   LRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKGIQVVEAINGATTEE  675

Query  583   GAFALSRPLQAGAFNYTLNRDSDEDWYLRSENAYRAEVPLYTSMLTQAMDYDRILAGSRS  642
             GAF  +  LQAGAFNY+LNRDSDE WYLRSENAYRAEVPLY+SMLTQAMDYDRILAGSRS
Sbjct  676   GAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLTQAMDYDRILAGSRS  735

Query  643   HQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEGDLLRTEVAGMSL  702
             HQTGV+GENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEGDLLRTEVAGMS+
Sbjct  736   HQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEGDLLRTEVAGMSV  795

Query  703   TTGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLVHTSSGLWADIVAQGTRHSMK  762
             T+GVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNL+H +SGLWADIVAQGTRHSMK
Sbjct  796   TAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASGLWADIVAQGTRHSMK  855

Query  763   ASSDNNDFRARGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDDGQDNAGYVKFGH  822
             ASSDNNDFR RGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDDGQDNA+YVKFGH
Sbjct  856   ASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDDGQDNASYVKFGH  915

Query  823   GSAQHVRAGFRLGSHNDMTFGEGTSSRDTLRDSAKHSVSELPVNWWVQPSVIRTFSSRGD  882
             GSAQHVRAGFRLGSH+DM FG GTSSRDTLR+SAKHSV ELPVNWWVQPSVIRTFSSRGD
Sbjct  916   GSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNWWVQPSVIRTFSSRGD  975

Query  883   MSMGTAAAGSNMTFSPSRNGTSLDLQAGLEARIRENITLGVQAGYAHSVSGSSAEGYNGQ  942
             MSMGTAAAGSNMTFSPS+NGTSLDLQAGLEAR+RENITLGVQA+YAHS++GSSAEGYN+Q
Sbjct  976   MSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQASYAHSINGSSAEGYNSQ  1035

Query  943   ATLNMTF  949
             ATLN+TF
Sbjct  1036  ATLNVTF  1042


 Score =  470 bits (1770),  Expect = 2e-133, Method: Compositional matrix adjust.
 Identities = 337/477 (71%), Positives = 409/477 (86%), Gaps = 5/477 (1%)

Query  1    MKRHLNTSYRLVWNHITGTLVVASELARSRGKRagvavalslaavtsvpalaaDKVVQAG  60
            MKRHLNT YRLVWNHITG++VVASELAR++GKR+GVAVALSLAAVTS+P LAAD VV++G
Sbjct  3    MKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVHPG  62

Query  61   ETVNDGTLTNHDNQIVFGTANGMTISTGLELGPDSEENTGGQWIQNGGIAGNTTVTTNGR  120
            ETVN+GTL NHDNQ+V GTA+G+T+STGLELGPDS+ENTGGQWI+ GG + NTTVT+NGR
Sbjct  63   ETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTANGR  122

Query  121  QVVLEGGTASDTVIRDGGGQSLNGLAVNTTLNNRGEQWVHEGGVATGTIINRDGYQSVKS  180
            Q+V  GGTASDTVIRDGGGQSLNGLAVNTTL+NRGEQWVH GG A+GTIIN+DGYQ++K 
Sbjct  123  QIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTIKH  182

Query  181  GGLATGTIINTGAEGGPDSDNSYTGQKVQGTAESTTINKNGRQIILFSGLARDTLIYAGG  240
            GGLATGTI+NTGAEGGP+S+N  +GQ V GTAESTTINKNGRQ+I  SG+ARDTLIYAGG
Sbjct  183  GGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAGG  242

Query  241  DQSVHGRALNTTLNGGYQYVHRDGLALNTVINEGGWQVVKAGGAAGNTTINQNGELRVHA  300
            DQ+VHG A NT L+GG QYVH +G A +T+IN +GWQV+K GG+A++TTINQ+G L+V+A
Sbjct  243  DQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQVNA  302

Query  301  GGEATAVTQNTGGALVTSTAATVIGTNRLGNFTVENGKADGVVLESGGRLDVLESHSAQN  360
            GG A+ VTQNTGGALVTSTAATV GTNRLG F+V +GKAD VVLE+GGRLDVL +H+A N
Sbjct  303  GGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN  362

Query  361  TLVDDGGTLAVSAGGKATSVTITSGGALIADSGATVEGTNASGK-FSIDGTSGQASGLLL  419
            T VDDGGTL V  GG AT+V++ +GG L+ADSGA+V GT + GK FSI+G  GQA +L+L
Sbjct  363  TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGG--GQADALML  420

Query  420  ENGGSFTVNAGGQAGNTTVGHRGTLTLAAGGSLSGRTQLSKGASMVLNGDVVSTGDI  476
            E+G+SFT+NAG+ A +TTV   G L  A GG+L+G T L++GA + L+G  V+ + +
Sbjct  421  EKGSSFTLNAGDTATDTTV--NGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTL  475

49) O3M_00325 in NC_018650


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score =  705 bits (2668),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 529/929 (57%), Positives = 678/929 (73%), Gaps = 84/929 (9%)

Query  57    VQAGETVSGGTLTNHDNQIVL--GTANGMTISTGLEYGPDNEANTGGQWIQNGGIANNTT  114
             V++G   +G  + +++ Q +   G A G  ++TG E GP++E  ++GQ +  GG A++TT
Sbjct  161   VHGGGKAAGTIINQDGYQTIKHGGLATGTIVNTGAEGGPESENVSSGQMV--GGTAESTT  218

Query  115   VTGGGLQRVNAGGSVSDTVIsagggqslqgqaVNTTLNGGEQWVHEGGIATGTVINEKGW  174
             +   G Q + ++G   DT+I AGG+Q+++G+A NT L+GG+Q VH+GG AT T+IN  GW
Sbjct  219   INKNGRQVIWSSGMARDTLIYAGGDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGW  278

Query  175   QAVKSGAMATDTVVNTGAEGGPDAENGDTGQFVRGNAVRTTINKNGRQIVAVEGTANTTV  234
             Q +K G                            G A +TTIN++G+  V   G A+   
Sbjct  279   QVIKEG----------------------------GTAAHTTINQKGKLQVNAGGKASDVT  310

Query  235   VYAGGDQTVHGHALDTTLN--GGYQYVHNGGTASDTVVNSDGWQIVKEGGLADFTTVNQK  292
               +GG       A  T  N  G++  V+  G A + V++++G+  V  G  A  T V++ 
Sbjct  311   QNTGGALVTSTAATVTGTNRLGAFSVVE--GKADNVVLENGGRLDVLTGHTATNTRVDDG  368

Query  293   GKLQVNAGGTATNVTLKQGGALVTSTAATVLGSNRLGN-FTVENGKADGVVLESGGRLDV  351
             G L+V  GGTAT V++ +GG L++ ++A+V G+   G+ F++  G+AD+++LE G+ + +
Sbjct  369   GTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEKGSSFTL  428

Query  352   LEGHSAQKTRVDDG------GTLA----------VSAGGKATD---VTMTSGSALIADSG  392
               G++A  T V++G      GTLA          ++ +GK+ +   +T+  G AL+ +++
Sbjct  429   NAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREGDALLQGGA  488

Query  393   ATVEGT---NASGKFSIDGTSGQASGLLLENGGSFTVNAGGQASNTTVGHRGT-LMLAAG  448
              T +G+   ++SG +++  T+    ++ L++G ++T+N +  +++  +++RGT L L+++
Sbjct  489   LTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEG-TLTLNDSTVTTDV-IAQRGTALKLTGS  546

Query  449   GSLSGRTQ-----LSKGAS-MVLNGDVVST--GDIVNAGEIYFDNQTTPDAVLSRAVAKG  500
               L+G  +     L+ GA+  + +   V +  +D+ +AG+I F +  T   V        
Sbjct  547   TVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFV--------  598

Query  501   DSPVTFHKLTTSNLTGQGGTINMRVRLD-GSNASDQLVINGGQATGKTWLAFTNVGNSNL  559
               P T   L   NL GQ GTI++RVR D + N +D+LVI+GG+ATGKT L + N GNS  
Sbjct  599   --PAT---LKVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSAS  653

Query  560   GVATSGQGIRVVDAQNGATTEEGAFALSRPLQAGAFNYTLNRDSDEDWYLRSENAYRAEV  619
             G+ATSG+GI+VV+A NGATTEEGAF  +  LQAGAFNY+LNRDSDE WYLRSENAYRAEV
Sbjct  654   GLATSGKGIQVVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEV  713

Query  620   PLYTSMLTQAMDYDRILAGSRSHQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESS  679
             PLY+SMLTQAMDYDRILAGSRSHQTGV+GENNSVRLSIQGGHLGHDNNGGIARGATPESS
Sbjct  714   PLYASMLTQAMDYDRILAGSRSHQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESS  773

Query  680   GSYGFVRLEGDLLRTEVAGMSLTTGVHGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLN  739
             GSYGFVRLEGDLLRTEVAGMS+T+GV GAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLN
Sbjct  774   GSYGFVRLEGDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLN  833

Query  740   LTHTSSGLWADIVAQGTRHSMKASSDNNDFRARGWGWLGSLETGLPFSITDNLMLEPQLQ  799
             L H +SGLWADIVAQGTRHSMKASSDNNDFR RGWGWLGSLETGLPFSITDNLMLEPQLQ
Sbjct  834   LIHNASGLWADIVAQGTRHSMKASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQ  893

Query  800   YTWQGLSLDDGQDNAGYVKFGHGSAQHVRAGFRLGSHNDMTFGEGTSSRDTLRDSTKHRV  859
             YTWQGLSLDDGQDNA+YVKFGHGSAQHVRAGFRLGSH+DM FG GTSSRDTLR+S+KH V
Sbjct  894   YTWQGLSLDDGQDNASYVKFGHGSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSV  953

Query  860   SELPVNWWVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSRNGTSLDLQAGLEARVRENIT  919
              ELPVNWWVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPS+NGTSLDLQAGLEARVRENIT
Sbjct  954   RELPVNWWVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENIT  1013

Query  920   LGVQAGYAHSVSGSSAEGYNGQATLNVTF  948
             LGVQA+YAHS++GSSAEGYN+QATLNVTF
Sbjct  1014  LGVQASYAHSINGSSAEGYNSQATLNVTF  1042


 Score =  449 bits (1692),  Expect = 4e-127, Method: Compositional matrix adjust.
 Identities = 312/477 (66%), Positives = 393/477 (83%), Gaps = 6/477 (1%)

Query  1    MKRHLNTSYRLVWNHITGTLVVASELARSRGKRTGVAIALSLAAVTSVPALAADTVVQAG  60
            MKRHLNT YRLVWNHITG++VVASELAR++GKR GVA+ALSLAAVTS+P LAAD VV++G
Sbjct  3    MKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVHPG  62

Query  61   ETVSGGTLTNHDNQIVLGTANGMTISTGLEYGPDNEANTGGQWIQNGGIANNTTVTGGGL  120
            ETV+GGTL NHDNQ+V GTA+G+T+STGLE GPD++ NTGGQWI+ GG + NTTVT+ G 
Sbjct  63   ETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTANGR  122

Query  121  QRVNAGGSVSDTVIsagggqslqgqaVNTTLNG-GEQWVHEGGIATGTVINEKGWQAVKS  179
            Q V+AGG+ SDTVI  GGGQSL+G AVNTTL+  GEQWVH GG A+GT+IN+ G Q++K 
Sbjct  123  QIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTIKH  182

Query  180  GAMATDTVVNTGAEGGPDAENGDTGQFVRGNAVRTTINKNGRQIVAVEGTANTTVVYAGG  239
            G++AT+T+VNTGAEGGP++EN  +GQ V G A  TTINKNGRQ++   G A  T++YAGG
Sbjct  183  GGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAGG  242

Query  240  DQTVHGHALDTTLNGGYQYVHNGGTASDTVVNSDGWQIVKEGGLADFTTVNQKGKLQVNA  299
            DQTVHG+A +T L+GG QYVHNGGTA++T++N DGWQ++KEGG A  TT+NQKGKLQVNA
Sbjct  243  DQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQVNA  302

Query  300  GGTATNVTLKQGGALVTSTAATVLGSNRLGNFTVENGKADGVVLESGGRLDVLEGHSAQK  359
            GG A++VT + GGALVTSTAATV G+NRLG F+V +GKAD VVLE+GGRLDVL GH+A +
Sbjct  303  GGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN  362

Query  360  TRVDDGGTLAVSAGGKATDVTMTSGSALIADSGATVEGTNASGK-FSIDGTSGQASGLLL  418
            TRVDDGGTL V  GG AT V+M +G+ L+ADSGA+V GT + GK FSI+G  GQA +L+L
Sbjct  363  TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGG--GQADALML  420

Query  419  ENGGSFTVNAGGQASNTTVGHRGTLMLAAGGSLSGRTQLSKGASMVLNGDVVSTGDI  475
            E+G+SFT+NAG+ A++TTV   G L  A GG+L+G T L++GA + L+G  V+ + +
Sbjct  421  EKGSSFTLNAGDTATDTTV--NGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTL  475

50) O3O_25300 in NC_018661


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score =  705 bits (2668),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 529/929 (57%), Positives = 678/929 (73%), Gaps = 84/929 (9%)

Query  57    VQAGETVSGGTLTNHDNQIVL--GTANGMTISTGLEYGPDNEANTGGQWIQNGGIANNTT  114
             V++G   +G  + +++ Q +   G A G  ++TG E GP++E  ++GQ +  GG A++TT
Sbjct  161   VHGGGKAAGTIINQDGYQTIKHGGLATGTIVNTGAEGGPESENVSSGQMV--GGTAESTT  218

Query  115   VTGGGLQRVNAGGSVSDTVIsagggqslqgqaVNTTLNGGEQWVHEGGIATGTVINEKGW  174
             +   G Q + ++G   DT+I AGG+Q+++G+A NT L+GG+Q VH+GG AT T+IN  GW
Sbjct  219   INKNGRQVIWSSGMARDTLIYAGGDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGW  278

Query  175   QAVKSGAMATDTVVNTGAEGGPDAENGDTGQFVRGNAVRTTINKNGRQIVAVEGTANTTV  234
             Q +K G                            G A +TTIN++G+  V   G A+   
Sbjct  279   QVIKEG----------------------------GTAAHTTINQKGKLQVNAGGKASDVT  310

Query  235   VYAGGDQTVHGHALDTTLN--GGYQYVHNGGTASDTVVNSDGWQIVKEGGLADFTTVNQK  292
               +GG       A  T  N  G++  V+  G A + V++++G+  V  G  A  T V++ 
Sbjct  311   QNTGGALVTSTAATVTGTNRLGAFSVVE--GKADNVVLENGGRLDVLTGHTATNTRVDDG  368

Query  293   GKLQVNAGGTATNVTLKQGGALVTSTAATVLGSNRLGN-FTVENGKADGVVLESGGRLDV  351
             G L+V  GGTAT V++ +GG L++ ++A+V G+   G+ F++  G+AD+++LE G+ + +
Sbjct  369   GTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEKGSSFTL  428

Query  352   LEGHSAQKTRVDDG------GTLA----------VSAGGKATD---VTMTSGSALIADSG  392
               G++A  T V++G      GTLA          ++ +GK+ +   +T+  G AL+ +++
Sbjct  429   NAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREGDALLQGGA  488

Query  393   ATVEGT---NASGKFSIDGTSGQASGLLLENGGSFTVNAGGQASNTTVGHRGT-LMLAAG  448
              T +G+   ++SG +++  T+    ++ L++G ++T+N +  +++  +++RGT L L+++
Sbjct  489   LTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEG-TLTLNDSTVTTDV-IAQRGTALKLTGS  546

Query  449   GSLSGRTQ-----LSKGAS-MVLNGDVVST--GDIVNAGEIYFDNQTTPDAVLSRAVAKG  500
               L+G  +     L+ GA+  + +   V +  +D+ +AG+I F +  T   V        
Sbjct  547   TVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFV--------  598

Query  501   DSPVTFHKLTTSNLTGQGGTINMRVRLD-GSNASDQLVINGGQATGKTWLAFTNVGNSNL  559
               P T   L   NL GQ GTI++RVR D + N +D+LVI+GG+ATGKT L + N GNS  
Sbjct  599   --PAT---LKVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSAS  653

Query  560   GVATSGQGIRVVDAQNGATTEEGAFALSRPLQAGAFNYTLNRDSDEDWYLRSENAYRAEV  619
             G+ATSG+GI+VV+A NGATTEEGAF  +  LQAGAFNY+LNRDSDE WYLRSENAYRAEV
Sbjct  654   GLATSGKGIQVVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEV  713

Query  620   PLYTSMLTQAMDYDRILAGSRSHQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESS  679
             PLY+SMLTQAMDYDRILAGSRSHQTGV+GENNSVRLSIQGGHLGHDNNGGIARGATPESS
Sbjct  714   PLYASMLTQAMDYDRILAGSRSHQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESS  773

Query  680   GSYGFVRLEGDLLRTEVAGMSLTTGVHGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLN  739
             GSYGFVRLEGDLLRTEVAGMS+T+GV GAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLN
Sbjct  774   GSYGFVRLEGDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLN  833

Query  740   LTHTSSGLWADIVAQGTRHSMKASSDNNDFRARGWGWLGSLETGLPFSITDNLMLEPQLQ  799
             L H +SGLWADIVAQGTRHSMKASSDNNDFR RGWGWLGSLETGLPFSITDNLMLEPQLQ
Sbjct  834   LIHNASGLWADIVAQGTRHSMKASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQ  893

Query  800   YTWQGLSLDDGQDNAGYVKFGHGSAQHVRAGFRLGSHNDMTFGEGTSSRDTLRDSTKHRV  859
             YTWQGLSLDDGQDNA+YVKFGHGSAQHVRAGFRLGSH+DM FG GTSSRDTLR+S+KH V
Sbjct  894   YTWQGLSLDDGQDNASYVKFGHGSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSV  953

Query  860   SELPVNWWVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSRNGTSLDLQAGLEARVRENIT  919
              ELPVNWWVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPS+NGTSLDLQAGLEARVRENIT
Sbjct  954   RELPVNWWVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENIT  1013

Query  920   LGVQAGYAHSVSGSSAEGYNGQATLNVTF  948
             LGVQA+YAHS++GSSAEGYN+QATLNVTF
Sbjct  1014  LGVQASYAHSINGSSAEGYNSQATLNVTF  1042


 Score =  449 bits (1692),  Expect = 4e-127, Method: Compositional matrix adjust.
 Identities = 312/477 (66%), Positives = 393/477 (83%), Gaps = 6/477 (1%)

Query  1    MKRHLNTSYRLVWNHITGTLVVASELARSRGKRTGVAIALSLAAVTSVPALAADTVVQAG  60
            MKRHLNT YRLVWNHITG++VVASELAR++GKR GVA+ALSLAAVTS+P LAAD VV++G
Sbjct  3    MKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVHPG  62

Query  61   ETVSGGTLTNHDNQIVLGTANGMTISTGLEYGPDNEANTGGQWIQNGGIANNTTVTGGGL  120
            ETV+GGTL NHDNQ+V GTA+G+T+STGLE GPD++ NTGGQWI+ GG + NTTVT+ G 
Sbjct  63   ETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTANGR  122

Query  121  QRVNAGGSVSDTVIsagggqslqgqaVNTTLNG-GEQWVHEGGIATGTVINEKGWQAVKS  179
            Q V+AGG+ SDTVI  GGGQSL+G AVNTTL+  GEQWVH GG A+GT+IN+ G Q++K 
Sbjct  123  QIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTIKH  182

Query  180  GAMATDTVVNTGAEGGPDAENGDTGQFVRGNAVRTTINKNGRQIVAVEGTANTTVVYAGG  239
            G++AT+T+VNTGAEGGP++EN  +GQ V G A  TTINKNGRQ++   G A  T++YAGG
Sbjct  183  GGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAGG  242

Query  240  DQTVHGHALDTTLNGGYQYVHNGGTASDTVVNSDGWQIVKEGGLADFTTVNQKGKLQVNA  299
            DQTVHG+A +T L+GG QYVHNGGTA++T++N DGWQ++KEGG A  TT+NQKGKLQVNA
Sbjct  243  DQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQVNA  302

Query  300  GGTATNVTLKQGGALVTSTAATVLGSNRLGNFTVENGKADGVVLESGGRLDVLEGHSAQK  359
            GG A++VT + GGALVTSTAATV G+NRLG F+V +GKAD VVLE+GGRLDVL GH+A +
Sbjct  303  GGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN  362

Query  360  TRVDDGGTLAVSAGGKATDVTMTSGSALIADSGATVEGTNASGK-FSIDGTSGQASGLLL  418
            TRVDDGGTL V  GG AT V+M +G+ L+ADSGA+V GT + GK FSI+G  GQA +L+L
Sbjct  363  TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGG--GQADALML  420

Query  419  ENGGSFTVNAGGQASNTTVGHRGTLMLAAGGSLSGRTQLSKGASMVLNGDVVSTGDI  475
            E+G+SFT+NAG+ A++TTV   G L  A GG+L+G T L++GA + L+G  V+ + +
Sbjct  421  EKGSSFTLNAGDTATDTTV--NGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTL  475

51) O3K_00310 in NC_018658


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score =  705 bits (2668),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 529/929 (57%), Positives = 678/929 (73%), Gaps = 84/929 (9%)

Query  57    VQAGETVSGGTLTNHDNQIVL--GTANGMTISTGLEYGPDNEANTGGQWIQNGGIANNTT  114
             V++G   +G  + +++ Q +   G A G  ++TG E GP++E  ++GQ +  GG A++TT
Sbjct  161   VHGGGKAAGTIINQDGYQTIKHGGLATGTIVNTGAEGGPESENVSSGQMV--GGTAESTT  218

Query  115   VTGGGLQRVNAGGSVSDTVIsagggqslqgqaVNTTLNGGEQWVHEGGIATGTVINEKGW  174
             +   G Q + ++G   DT+I AGG+Q+++G+A NT L+GG+Q VH+GG AT T+IN  GW
Sbjct  219   INKNGRQVIWSSGMARDTLIYAGGDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGW  278

Query  175   QAVKSGAMATDTVVNTGAEGGPDAENGDTGQFVRGNAVRTTINKNGRQIVAVEGTANTTV  234
             Q +K G                            G A +TTIN++G+  V   G A+   
Sbjct  279   QVIKEG----------------------------GTAAHTTINQKGKLQVNAGGKASDVT  310

Query  235   VYAGGDQTVHGHALDTTLN--GGYQYVHNGGTASDTVVNSDGWQIVKEGGLADFTTVNQK  292
               +GG       A  T  N  G++  V+  G A + V++++G+  V  G  A  T V++ 
Sbjct  311   QNTGGALVTSTAATVTGTNRLGAFSVVE--GKADNVVLENGGRLDVLTGHTATNTRVDDG  368

Query  293   GKLQVNAGGTATNVTLKQGGALVTSTAATVLGSNRLGN-FTVENGKADGVVLESGGRLDV  351
             G L+V  GGTAT V++ +GG L++ ++A+V G+   G+ F++  G+AD+++LE G+ + +
Sbjct  369   GTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEKGSSFTL  428

Query  352   LEGHSAQKTRVDDG------GTLA----------VSAGGKATD---VTMTSGSALIADSG  392
               G++A  T V++G      GTLA          ++ +GK+ +   +T+  G AL+ +++
Sbjct  429   NAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREGDALLQGGA  488

Query  393   ATVEGT---NASGKFSIDGTSGQASGLLLENGGSFTVNAGGQASNTTVGHRGT-LMLAAG  448
              T +G+   ++SG +++  T+    ++ L++G ++T+N +  +++  +++RGT L L+++
Sbjct  489   LTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEG-TLTLNDSTVTTDV-IAQRGTALKLTGS  546

Query  449   GSLSGRTQ-----LSKGAS-MVLNGDVVST--GDIVNAGEIYFDNQTTPDAVLSRAVAKG  500
               L+G  +     L+ GA+  + +   V +  +D+ +AG+I F +  T   V        
Sbjct  547   TVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFV--------  598

Query  501   DSPVTFHKLTTSNLTGQGGTINMRVRLD-GSNASDQLVINGGQATGKTWLAFTNVGNSNL  559
               P T   L   NL GQ GTI++RVR D + N +D+LVI+GG+ATGKT L + N GNS  
Sbjct  599   --PAT---LKVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSAS  653

Query  560   GVATSGQGIRVVDAQNGATTEEGAFALSRPLQAGAFNYTLNRDSDEDWYLRSENAYRAEV  619
             G+ATSG+GI+VV+A NGATTEEGAF  +  LQAGAFNY+LNRDSDE WYLRSENAYRAEV
Sbjct  654   GLATSGKGIQVVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEV  713

Query  620   PLYTSMLTQAMDYDRILAGSRSHQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESS  679
             PLY+SMLTQAMDYDRILAGSRSHQTGV+GENNSVRLSIQGGHLGHDNNGGIARGATPESS
Sbjct  714   PLYASMLTQAMDYDRILAGSRSHQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESS  773

Query  680   GSYGFVRLEGDLLRTEVAGMSLTTGVHGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLN  739
             GSYGFVRLEGDLLRTEVAGMS+T+GV GAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLN
Sbjct  774   GSYGFVRLEGDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLN  833

Query  740   LTHTSSGLWADIVAQGTRHSMKASSDNNDFRARGWGWLGSLETGLPFSITDNLMLEPQLQ  799
             L H +SGLWADIVAQGTRHSMKASSDNNDFR RGWGWLGSLETGLPFSITDNLMLEPQLQ
Sbjct  834   LIHNASGLWADIVAQGTRHSMKASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQ  893

Query  800   YTWQGLSLDDGQDNAGYVKFGHGSAQHVRAGFRLGSHNDMTFGEGTSSRDTLRDSTKHRV  859
             YTWQGLSLDDGQDNA+YVKFGHGSAQHVRAGFRLGSH+DM FG GTSSRDTLR+S+KH V
Sbjct  894   YTWQGLSLDDGQDNASYVKFGHGSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSV  953

Query  860   SELPVNWWVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSRNGTSLDLQAGLEARVRENIT  919
              ELPVNWWVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPS+NGTSLDLQAGLEARVRENIT
Sbjct  954   RELPVNWWVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENIT  1013

Query  920   LGVQAGYAHSVSGSSAEGYNGQATLNVTF  948
             LGVQA+YAHS++GSSAEGYN+QATLNVTF
Sbjct  1014  LGVQASYAHSINGSSAEGYNSQATLNVTF  1042


 Score =  449 bits (1692),  Expect = 4e-127, Method: Compositional matrix adjust.
 Identities = 312/477 (66%), Positives = 393/477 (83%), Gaps = 6/477 (1%)

Query  1    MKRHLNTSYRLVWNHITGTLVVASELARSRGKRTGVAIALSLAAVTSVPALAADTVVQAG  60
            MKRHLNT YRLVWNHITG++VVASELAR++GKR GVA+ALSLAAVTS+P LAAD VV++G
Sbjct  3    MKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVHPG  62

Query  61   ETVSGGTLTNHDNQIVLGTANGMTISTGLEYGPDNEANTGGQWIQNGGIANNTTVTGGGL  120
            ETV+GGTL NHDNQ+V GTA+G+T+STGLE GPD++ NTGGQWI+ GG + NTTVT+ G 
Sbjct  63   ETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTANGR  122

Query  121  QRVNAGGSVSDTVIsagggqslqgqaVNTTLNG-GEQWVHEGGIATGTVINEKGWQAVKS  179
            Q V+AGG+ SDTVI  GGGQSL+G AVNTTL+  GEQWVH GG A+GT+IN+ G Q++K 
Sbjct  123  QIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTIKH  182

Query  180  GAMATDTVVNTGAEGGPDAENGDTGQFVRGNAVRTTINKNGRQIVAVEGTANTTVVYAGG  239
            G++AT+T+VNTGAEGGP++EN  +GQ V G A  TTINKNGRQ++   G A  T++YAGG
Sbjct  183  GGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAGG  242

Query  240  DQTVHGHALDTTLNGGYQYVHNGGTASDTVVNSDGWQIVKEGGLADFTTVNQKGKLQVNA  299
            DQTVHG+A +T L+GG QYVHNGGTA++T++N DGWQ++KEGG A  TT+NQKGKLQVNA
Sbjct  243  DQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQVNA  302

Query  300  GGTATNVTLKQGGALVTSTAATVLGSNRLGNFTVENGKADGVVLESGGRLDVLEGHSAQK  359
            GG A++VT + GGALVTSTAATV G+NRLG F+V +GKAD VVLE+GGRLDVL GH+A +
Sbjct  303  GGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN  362

Query  360  TRVDDGGTLAVSAGGKATDVTMTSGSALIADSGATVEGTNASGK-FSIDGTSGQASGLLL  418
            TRVDDGGTL V  GG AT V+M +G+ L+ADSGA+V GT + GK FSI+G  GQA +L+L
Sbjct  363  TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGG--GQADALML  420

Query  419  ENGGSFTVNAGGQASNTTVGHRGTLMLAAGGSLSGRTQLSKGASMVLNGDVVSTGDI  475
            E+G+SFT+NAG+ A++TTV   G L  A GG+L+G T L++GA + L+G  V+ + +
Sbjct  421  EKGSSFTLNAGDTATDTTV--NGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTL  475

52) ECO26_3415 in NC_013361


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score =  702 bits (2655),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 534/929 (58%), Positives = 683/929 (74%), Gaps = 84/929 (9%)

Query  57    VQAGETVNGGTLTNHDNQIVF--GTANGMTISTGLEYGPDNEANTGGQWIQNGGIANNTT  114
             V++G    G  + +++ Q +   G A G  ++TG E GP++E  ++GQ +  GG A++TT
Sbjct  161   VHGGGKAAGTIINQDGYQTIKHGGLATGTIVNTGAEGGPESENVSSGQMV--GGTAESTT  218

Query  115   VTGGGLQRVNAGGSVSDTVIsagggqslqgqaVNTTLNGGEQWVHEGGIATVTVINEKGW  174
             +   G Q + ++G   DT+I AGG+Q+++G+A NT L+GG+Q VH+GG AT T+IN  GW
Sbjct  219   INKNGRQVIWSSGMARDTLIYAGGDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGW  278

Query  175   QAVKSGAMATDTVVNTGAEGGPDAENGDTGQNVYGDAVRTTINKNGRQIVAAEGTANTTV  234
             Q +K G                            G A +TTIN++G+  V A G A+   
Sbjct  279   QVIKEG----------------------------GTAAHTTINQKGKLQVNAGGKASDVT  310

Query  235   VYAGGDQTVHGHALDTTLN--GGYQYVHNGGTASGTVVNSDGWQIIKEGGLADFTTVNQK  292
               +GG       A  T  N  G++  V+  G A   V++++G+  +  G  A  T V++ 
Sbjct  311   QNTGGALVTSTAATVTGTNRLGAFSVVE--GKADNVVLENGGRLDVLTGHTATNTRVDDG  368

Query  293   GKLQVNAGGTATHVTLKQGGALVTSTAATVLGSNRLGN-FTVENGKADGVVLESGGRLDV  351
             G L+V  GGTAT V++ +GG L++ ++A+V G+   G+ F++  G+AD+++LE G+ + +
Sbjct  369   GTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEKGSSFTL  428

Query  352   LEGHSAQKTRVDDG------GTLA----------VSAGGKATD---VTMTSGGALIADSG  392
               G++A  T V++G      GTLA          ++ +GK+ +   +T+  G+AL+ +++
Sbjct  429   NAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREGDALLQGGA  488

Query  393   ATVEGT---NASGKFSIDGISGQASGLLLENGGSFTVNAGGQAGNTTVGHRGT-LTLAAG  448
              T +G+   ++SG +++   +    ++ L++G ++T+N +  + +  +++RGT L L+++
Sbjct  489   LTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEG-TLTLNDSTVTTDV-IAQRGTALKLTGS  546

Query  449   GSLSGRTQ-----LSKGAS-MVLNGDVVST--GDIVNAGEIHFDNQTTQDAVLSRAVAKG  500
               L+G  +     L+ GA+  + +   V +  +D+ +AG+IHF +  T   V        
Sbjct  547   TVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFV--------  598

Query  501   DSPVTFHKltttnltgqggtINMRVRLD-GSNTSDQLVINGGQATGKTWLAFTNVGNSNL  559
               P T+      NL GQ GTI++RVR D + N +D+LVI+GG+ATGKT L + N GNS  
Sbjct  599   --PATLK---VKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSAS  653

Query  560   GVATTGQGIRVVDAQNGATTEEGAFALSRPLQAGAFNYTLNRDSDEDWYLRSENAYRAEV  619
             G+AT+G+GI+VV+A NGATTEEGAF  +  LQAGAFNY+LNRDSDE WYLRSENAYRAEV
Sbjct  654   GLATSGKGIQVVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEV  713

Query  620   PLYASMLTQAMDYDRILAGSRSHQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESS  679
             PLYASMLTQAMDYDRILAGSRSHQTGV+GENNSVRLSIQGGHLGHDNNGGIARGATPESS
Sbjct  714   PLYASMLTQAMDYDRILAGSRSHQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESS  773

Query  680   GSYGFVRLEGDLLRTEVAGMSLTTGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLN  739
             GSYGFVRLEGDLLRTEVAGMS+T+GVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLN
Sbjct  774   GSYGFVRLEGDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLN  833

Query  740   LVHTSSGLWADIVAQGTRHSMKASSDNNDFRARGWGWLGSLETGLPFSITDNLMLEPQLQ  799
             L+H +SGLWADIVAQGTRHSMKASSDNNDFR RGWGWLGSLETGLPFSITDNLMLEPQLQ
Sbjct  834   LIHNASGLWADIVAQGTRHSMKASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQ  893

Query  800   YTWQGLSLDDGQDNAGYVKFGHGSAQHVRAGFRLGSHNDMNFGKGTSSRDTLRDSAKHSV  859
             YTWQGLSLDDGQDNA+YVKFGHGSAQHVRAGFRLGSH+DMNFGKGTSSRDTLR+SAKHSV
Sbjct  894   YTWQGLSLDDGQDNASYVKFGHGSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSV  953

Query  860   RELPVNWWVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSRNGTSLDLQAGLEARVRENIT  919
             RELPVNWWVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPS+NGTSLDLQAGLEARVRENIT
Sbjct  954   RELPVNWWVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENIT  1013

Query  920   LGVQAGYAHSVSGSSAEGYNGQATLNVTF  948
             LGVQA+YAHS++GSSAEGYN+QATLNVTF
Sbjct  1014  LGVQASYAHSINGSSAEGYNSQATLNVTF  1042


 Score =  414 bits (1558),  Expect = 1e-116, Method: Compositional matrix adjust.
 Identities = 315/477 (67%), Positives = 392/477 (83%), Gaps = 6/477 (1%)

Query  1    MKRHLNTSYRLVWNHITGTLVVASELARSRGKRagvavalslaavtsvpalaaDTVVQAG  60
            MKRHLNT YRLVWNHITG++VVASELAR++GKR+GVAVALSLAAVTS+P LAAD VV++G
Sbjct  3    MKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVHPG  62

Query  61   ETVNGGTLTNHDNQIVFGTANGMTISTGLEYGPDNEANTGGQWIQNGGIANNTTVTGGGL  120
            ETVNGGTL NHDNQ+V GTA+G+T+STGLE GPD++ NTGGQWI+ GG + NTTVT+ G 
Sbjct  63   ETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTANGR  122

Query  121  QRVNAGGSVSDTVIsagggqslqgqaVNTTLNG-GEQWVHEGGIATVTVINEKGWQAVKS  179
            Q V+AGG+ SDTVI  GGGQSL+G AVNTTL+  GEQWVH GG A+ T+IN+ G Q++K 
Sbjct  123  QIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTIKH  182

Query  180  GAMATDTVVNTGAEGGPDAENGDTGQNVYGDAVRTTINKNGRQIVAAEGTANTTVVYAGG  239
            G++AT+T+VNTGAEGGP++EN  +GQ V G A  TTINKNGRQ++ + G A  T++YAGG
Sbjct  183  GGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAGG  242

Query  240  DQTVHGHALDTTLNGGYQYVHNGGTASGTVVNSDGWQIIKEGGLADFTTVNQKGKLQVNA  299
            DQTVHG+A +T L+GG QYVHNGGTA+ T++N DGWQ+IKEGG A  TT+NQKGKLQVNA
Sbjct  243  DQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQVNA  302

Query  300  GGTATHVTLKQGGALVTSTAATVLGSNRLGNFTVENGKADGVVLESGGRLDVLEGHSAQK  359
            GG A++VT + GGALVTSTAATV G+NRLG F+V +GKAD VVLE+GGRLDVL GH+A +
Sbjct  303  GGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN  362

Query  360  TRVDDGGTLAVSAGGKATDVTMTSGGALIADSGATVEGTNASGK-FSIDGISGQASGLLL  418
            TRVDDGGTL V  GG AT V+M +GG L+ADSGA+V GT + GK FSI+G  GQA +L+L
Sbjct  363  TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGG--GQADALML  420

Query  419  ENGGSFTVNAGGQAGNTTVGHRGTLTLAAGGSLSGRTQLSKGASMVLNGDVVSTGDI  475
            E+G+SFT+NAG+ A +TTV   G L  A GG+L+G T L++GA + L+G  V+ + +
Sbjct  421  EKGSSFTLNAGDTATDTTV--NGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTL  475

53) Z1211 in NC_002655


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score =  701 bits (2653),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 529/907 (59%), Positives = 675/907 (75%), Gaps = 83/907 (9%)

Query  134   GTANGMTISTGLELGPDSEENTGGQWIQNGGIAGNTTVTTNGRQVVLEGGTASDTVIRDG  193
             G A G  ++TG E GP+SE+ ++GQ +  GG A +TT+  NGRQV+  +G A DT+I  G
Sbjct  184   GLATGTIVNTGAEGGPESENVSSGQMV--GGTAESTTINKNGRQVIWSSGMARDTLIYAG  241

Query  194   GGQSLNGLAVNTTLNNRGEQWVHEGGVATGTIINRDGYQSVKSGGLATGTIINTGAEGGP  253
             G+Q+++G A NT L+  G+Q VH+GG AT T+INRDG Q +K GG               
Sbjct  242   GDQTVHGEAHNTRLEG-GNQYVHNGGTATETLINRDGWQVIKEGG---------------  285

Query  254   DSDNSYTGQKVQGTAESTTINKNGRQIILFSGLARDTLIYAGGDQSVHGRALNTTLN--G  311
                          TA  TTIN++G+  +  +G A D    +GG       A  T  N  G
Sbjct  286   -------------TAAHTTINQKGKLQVNAGGKASDVTQNTGGALVTSTAATVTGTNRLG  332

Query  312   GYQYVHRDGLALNTVINEGGWQVVKAGGAAGNTTINQNGELRVHAGGEATAVTQNTGGAL  371
             ++  V  +G A N V+++GG+  V +G +A NT +++ G L V+ GG AT+V+   GG L
Sbjct  333   AFSVV--EGKADNVVLENGGRLDVLTGHTATNTRVDDGGTLDVRNGGTATTVSMGNGGVL  390

Query  372   VTSTAATVIGTNRLGN-FTVENGKADGVVLESGGRLDVLESHSAQNTLVDDG------GT  424
             ++ ++A+V GT   G+ F++  G+AD+++LE G+ + +  +++A +T V++G      GT
Sbjct  391   LADSGAAVSGTRSDGKAFSIGGGQADALMLEKGSSFTLNAGDTATDTTVNGGLFTARGGT  450

Query  425   LAVSA----------GGKAT---SVTITSGGALIADSGATVEGT---NASGKFSIDGTSG  468
             LA ++          +GK+    ++TI  G+AL+ +++ T +G+   ++SG +++  T+ 
Sbjct  451   LAGTTTLNNGAILTLSGKTVNNDTLTIREGDALLQGGALTGNGSVEKSGSGTLTVSNTTL  510

Query  469   QASGLLLENGGSFTVNAGGQAGNTTVGHRGT-LTLAAGGSLSGRTQ-----LSKGAS-MV  521
                ++ L++G ++T+N +  + +  +++RGT L L+++  L+G  +     L+ GA+  +
Sbjct  511   TQKAVNLNEG-TLTLNDSTVTTDV-IAQRGTALKLTGSTVLNGAIDPTNVTLASGATWNI  568

Query  522   LNGDVVST--GDIVNAGEIRFDNQTTPNAALSRAVAKSNSPVTFHKltttnltgqggtIN  579
              +   V +  +D+ +AG+I+F   +T  + +  A  K ++           L GQ GTI+
Sbjct  569   PDNATVQSVVDDLSHAGQIHFT--STRTGKFVPATLKVKN-----------LNGQNGTIS  615

Query  580   MRVRLD-GSNASDQLVINGGQATGKTWLAFTNVGNSNLGVATTGQGIRVVDAQNGATTEE  638
             +RVR D + N +D+LVI+GG+ATGKT L + N GNS  G+AT+G+GI+VV+A NGATTEE
Sbjct  616   LRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKGIQVVEAINGATTEE  675

Query  639   GAFALSRPLQAGAFNYTLNRDSDEDWYLRSENAYRAEVPLYTSMLTQAMDYDRILAGSRS  698
             GAF  +  LQAGAFNY+LNRDSDE WYLRSENAYRAEVPLY+SMLTQAMDYDRILAGSRS
Sbjct  676   GAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLTQAMDYDRILAGSRS  735

Query  699   HQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEGDLLRTEVAGMSL  758
             HQTGV+GENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEGDLLRTEVAGMS+
Sbjct  736   HQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEGDLLRTEVAGMSV  795

Query  759   TTGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLVHTSSGLWADIVAQGTRHSMK  818
             T+GVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNL+H +SGLWADIVAQGTRHSMK
Sbjct  796   TAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASGLWADIVAQGTRHSMK  855

Query  819   ASSDNNDFRARGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDDGQDNAGYVKFGH  878
             ASSDNNDFR RGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDDGQDNA+YVKFGH
Sbjct  856   ASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDDGQDNASYVKFGH  915

Query  879   GSAQHVRAGFRLGSHNDMTFGEGTSSRDTLRDSAKHSVSELPVNWWVQPSVIRTFSSRGD  938
             GSAQHVRAGFRLGSH+DM FG GTSSRDTLR+SAKHSV ELPVNWWVQPSVIRTFSSRGD
Sbjct  916   GSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNWWVQPSVIRTFSSRGD  975

Query  939   MSMGTAAAGSNMTFSPSRNGTSLDLQAGLEARIRENITLGVQAGYAHSVSGSSAEGYNGQ  998
             MSMGTAAAGSNMTFSPS+NGTSLDLQAGLEAR+RENITLGVQA+YAHS++GSSAEGYN+Q
Sbjct  976   MSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQASYAHSINGSSAEGYNSQ  1035

Query  999   ATLNMTF  1005
             ATLN+TF
Sbjct  1036  ATLNVTF  1042


 Score =  469 bits (1766),  Expect = 5e-133, Method: Compositional matrix adjust.
 Identities = 338/479 (71%), Positives = 410/479 (86%), Gaps = 5/479 (1%)

Query  55   KLMKRHLNTSYRLVWNHITGTLVVASELARSRGKRagvavalslaavtsvpalaaDKVVQ  114
             LMKRHLNT YRLVWNHITG++VVASELAR++GKR+GVAVALSLAAVTS+P LAAD VV+
Sbjct  1    MLMKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVH  60

Query  115  AGETVNDGTLTNHDNQIVFGTANGMTISTGLELGPDSEENTGGQWIQNGGIAGNTTVTTN  174
            +GETVN+GTL NHDNQ+V GTA+G+T+STGLELGPDS+ENTGGQWI+ GG + NTTVT+N
Sbjct  61   PGETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTAN  120

Query  175  GRQVVLEGGTASDTVIRDGGGQSLNGLAVNTTLNNRGEQWVHEGGVATGTIINRDGYQSV  234
            GRQ+V  GGTASDTVIRDGGGQSLNGLAVNTTL+NRGEQWVH GG A+GTIIN+DGYQ++
Sbjct  121  GRQIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTI  180

Query  235  KSGGLATGTIINTGAEGGPDSDNSYTGQKVQGTAESTTINKNGRQIILFSGLARDTLIYA  294
            K GGLATGTI+NTGAEGGP+S+N  +GQ V GTAESTTINKNGRQ+I  SG+ARDTLIYA
Sbjct  181  KHGGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYA  240

Query  295  GGDQSVHGRALNTTLNGGYQYVHRDGLALNTVINEGGWQVVKAGGAAGNTTINQNGELRV  354
            GGDQ+VHG A NT L+GG QYVH +G A +T+IN +GWQV+K GG+A++TTINQ+G L+V
Sbjct  241  GGDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQV  300

Query  355  HAGGEATAVTQNTGGALVTSTAATVIGTNRLGNFTVENGKADGVVLESGGRLDVLESHSA  414
            +AGG A+ VTQNTGGALVTSTAATV GTNRLG F+V +GKAD VVLE+GGRLDVL +H+A
Sbjct  301  NAGGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTA  360

Query  415  QNTLVDDGGTLAVSAGGKATSVTITSGGALIADSGATVEGTNASGK-FSIDGTSGQASGL  473
             NT VDDGGTL V  GG AT+V++ +GG L+ADSGA+V GT + GK FSI+G  GQA +L
Sbjct  361  TNTRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGG--GQADAL  418

Query  474  LLENGGSFTVNAGGQAGNTTVGHRGTLTLAAGGSLSGRTQLSKGASMVLNGDVVSTGDI  532
            +LE+G+SFT+NAG+ A +TTV   G L  A GG+L+G T L++GA + L+G  V+ + +
Sbjct  419  MLEKGSSFTLNAGDTATDTTV--NGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTL  475

54) Z1651 in NC_002655


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score =  701 bits (2653),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 529/907 (59%), Positives = 675/907 (75%), Gaps = 83/907 (9%)

Query  134   GTANGMTISTGLELGPDSEENTGGQWIQNGGIAGNTTVTTNGRQVVLEGGTASDTVIRDG  193
             G A G  ++TG E GP+SE+ ++GQ +  GG A +TT+  NGRQV+  +G A DT+I  G
Sbjct  184   GLATGTIVNTGAEGGPESENVSSGQMV--GGTAESTTINKNGRQVIWSSGMARDTLIYAG  241

Query  194   GGQSLNGLAVNTTLNNRGEQWVHEGGVATGTIINRDGYQSVKSGGLATGTIINTGAEGGP  253
             G+Q+++G A NT L+  G+Q VH+GG AT T+INRDG Q +K GG               
Sbjct  242   GDQTVHGEAHNTRLEG-GNQYVHNGGTATETLINRDGWQVIKEGG---------------  285

Query  254   DSDNSYTGQKVQGTAESTTINKNGRQIILFSGLARDTLIYAGGDQSVHGRALNTTLN--G  311
                          TA  TTIN++G+  +  +G A D    +GG       A  T  N  G
Sbjct  286   -------------TAAHTTINQKGKLQVNAGGKASDVTQNTGGALVTSTAATVTGTNRLG  332

Query  312   GYQYVHRDGLALNTVINEGGWQVVKAGGAAGNTTINQNGELRVHAGGEATAVTQNTGGAL  371
             ++  V  +G A N V+++GG+  V +G +A NT +++ G L V+ GG AT+V+   GG L
Sbjct  333   AFSVV--EGKADNVVLENGGRLDVLTGHTATNTRVDDGGTLDVRNGGTATTVSMGNGGVL  390

Query  372   VTSTAATVIGTNRLGN-FTVENGKADGVVLESGGRLDVLESHSAQNTLVDDG------GT  424
             ++ ++A+V GT   G+ F++  G+AD+++LE G+ + +  +++A +T V++G      GT
Sbjct  391   LADSGAAVSGTRSDGKAFSIGGGQADALMLEKGSSFTLNAGDTATDTTVNGGLFTARGGT  450

Query  425   LAVSA----------GGKAT---SVTITSGGALIADSGATVEGT---NASGKFSIDGTSG  468
             LA ++          +GK+    ++TI  G+AL+ +++ T +G+   ++SG +++  T+ 
Sbjct  451   LAGTTTLNNGAILTLSGKTVNNDTLTIREGDALLQGGALTGNGSVEKSGSGTLTVSNTTL  510

Query  469   QASGLLLENGGSFTVNAGGQAGNTTVGHRGT-LTLAAGGSLSGRTQ-----LSKGAS-MV  521
                ++ L++G ++T+N +  + +  +++RGT L L+++  L+G  +     L+ GA+  +
Sbjct  511   TQKAVNLNEG-TLTLNDSTVTTDV-IAQRGTALKLTGSTVLNGAIDPTNVTLASGATWNI  568

Query  522   LNGDVVST--GDIVNAGEIRFDNQTTPNAALSRAVAKSNSPVTFHKltttnltgqggtIN  579
              +   V +  +D+ +AG+I+F   +T  + +  A  K ++           L GQ GTI+
Sbjct  569   PDNATVQSVVDDLSHAGQIHFT--STRTGKFVPATLKVKN-----------LNGQNGTIS  615

Query  580   MRVRLD-GSNASDQLVINGGQATGKTWLAFTNVGNSNLGVATTGQGIRVVDAQNGATTEE  638
             +RVR D + N +D+LVI+GG+ATGKT L + N GNS  G+AT+G+GI+VV+A NGATTEE
Sbjct  616   LRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKGIQVVEAINGATTEE  675

Query  639   GAFALSRPLQAGAFNYTLNRDSDEDWYLRSENAYRAEVPLYTSMLTQAMDYDRILAGSRS  698
             GAF  +  LQAGAFNY+LNRDSDE WYLRSENAYRAEVPLY+SMLTQAMDYDRILAGSRS
Sbjct  676   GAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLTQAMDYDRILAGSRS  735

Query  699   HQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEGDLLRTEVAGMSL  758
             HQTGV+GENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEGDLLRTEVAGMS+
Sbjct  736   HQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEGDLLRTEVAGMSV  795

Query  759   TTGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLVHTSSGLWADIVAQGTRHSMK  818
             T+GVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNL+H +SGLWADIVAQGTRHSMK
Sbjct  796   TAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASGLWADIVAQGTRHSMK  855

Query  819   ASSDNNDFRARGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDDGQDNAGYVKFGH  878
             ASSDNNDFR RGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDDGQDNA+YVKFGH
Sbjct  856   ASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDDGQDNASYVKFGH  915

Query  879   GSAQHVRAGFRLGSHNDMTFGEGTSSRDTLRDSAKHSVSELPVNWWVQPSVIRTFSSRGD  938
             GSAQHVRAGFRLGSH+DM FG GTSSRDTLR+SAKHSV ELPVNWWVQPSVIRTFSSRGD
Sbjct  916   GSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNWWVQPSVIRTFSSRGD  975

Query  939   MSMGTAAAGSNMTFSPSRNGTSLDLQAGLEARIRENITLGVQAGYAHSVSGSSAEGYNGQ  998
             MSMGTAAAGSNMTFSPS+NGTSLDLQAGLEAR+RENITLGVQA+YAHS++GSSAEGYN+Q
Sbjct  976   MSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQASYAHSINGSSAEGYNSQ  1035

Query  999   ATLNMTF  1005
             ATLN+TF
Sbjct  1036  ATLNVTF  1042


 Score =  469 bits (1766),  Expect = 5e-133, Method: Compositional matrix adjust.
 Identities = 338/479 (71%), Positives = 410/479 (86%), Gaps = 5/479 (1%)

Query  55   KLMKRHLNTSYRLVWNHITGTLVVASELARSRGKRagvavalslaavtsvpalaaDKVVQ  114
             LMKRHLNT YRLVWNHITG++VVASELAR++GKR+GVAVALSLAAVTS+P LAAD VV+
Sbjct  1    MLMKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVH  60

Query  115  AGETVNDGTLTNHDNQIVFGTANGMTISTGLELGPDSEENTGGQWIQNGGIAGNTTVTTN  174
            +GETVN+GTL NHDNQ+V GTA+G+T+STGLELGPDS+ENTGGQWI+ GG + NTTVT+N
Sbjct  61   PGETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTAN  120

Query  175  GRQVVLEGGTASDTVIRDGGGQSLNGLAVNTTLNNRGEQWVHEGGVATGTIINRDGYQSV  234
            GRQ+V  GGTASDTVIRDGGGQSLNGLAVNTTL+NRGEQWVH GG A+GTIIN+DGYQ++
Sbjct  121  GRQIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTI  180

Query  235  KSGGLATGTIINTGAEGGPDSDNSYTGQKVQGTAESTTINKNGRQIILFSGLARDTLIYA  294
            K GGLATGTI+NTGAEGGP+S+N  +GQ V GTAESTTINKNGRQ+I  SG+ARDTLIYA
Sbjct  181  KHGGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYA  240

Query  295  GGDQSVHGRALNTTLNGGYQYVHRDGLALNTVINEGGWQVVKAGGAAGNTTINQNGELRV  354
            GGDQ+VHG A NT L+GG QYVH +G A +T+IN +GWQV+K GG+A++TTINQ+G L+V
Sbjct  241  GGDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQV  300

Query  355  HAGGEATAVTQNTGGALVTSTAATVIGTNRLGNFTVENGKADGVVLESGGRLDVLESHSA  414
            +AGG A+ VTQNTGGALVTSTAATV GTNRLG F+V +GKAD VVLE+GGRLDVL +H+A
Sbjct  301  NAGGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTA  360

Query  415  QNTLVDDGGTLAVSAGGKATSVTITSGGALIADSGATVEGTNASGK-FSIDGTSGQASGL  473
             NT VDDGGTL V  GG AT+V++ +GG L+ADSGA+V GT + GK FSI+G  GQA +L
Sbjct  361  TNTRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGG--GQADAL  418

Query  474  LLENGGSFTVNAGGQAGNTTVGHRGTLTLAAGGSLSGRTQLSKGASMVLNGDVVSTGDI  532
            +LE+G+SFT+NAG+ A +TTV   G L  A GG+L+G T L++GA + L+G  V+ + +
Sbjct  419  MLEKGSSFTLNAGDTATDTTV--NGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTL  475

55) ECO26_1353 in NC_013361


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score =  701 bits (2653),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 529/907 (59%), Positives = 675/907 (75%), Gaps = 83/907 (9%)

Query  134   GTANGMTISTGLELGPDSEENTGGQWIQNGGIAGNTTVTTNGRQVVLEGGTASDTVIRDG  193
             G A G  ++TG E GP+SE+ ++GQ +  GG A +TT+  NGRQV+  +G A DT+I  G
Sbjct  184   GLATGTIVNTGAEGGPESENVSSGQMV--GGTAESTTINKNGRQVIWSSGMARDTLIYAG  241

Query  194   GGQSLNGLAVNTTLNNRGEQWVHEGGVATGTIINRDGYQSVKSGGLATGTIINTGAEGGP  253
             G+Q+++G A NT L+  G+Q VH+GG AT T+INRDG Q +K GG               
Sbjct  242   GDQTVHGEAHNTRLEG-GNQYVHNGGTATETLINRDGWQVIKEGG---------------  285

Query  254   DSDNSYTGQKVQGTAESTTINKNGRQIILFSGLARDTLIYAGGDQSVHGRALNTTLN--G  311
                          TA  TTIN++G+  +  +G A D    +GG       A  T  N  G
Sbjct  286   -------------TAAHTTINQKGKLQVNAGGKASDVTQNTGGALVTSTAATVTGTNRLG  332

Query  312   GYQYVHRDGLALNTVINEGGWQVVKAGGAAGNTTINQNGELRVHAGGEATAVTQNTGGAL  371
             ++  V  +G A N V+++GG+  V +G +A NT +++ G L V+ GG AT+V+   GG L
Sbjct  333   AFSVV--EGKADNVVLENGGRLDVLTGHTATNTRVDDGGTLDVRNGGTATTVSMGNGGVL  390

Query  372   VTSTAATVIGTNRLGN-FTVENGKADGVVLESGGRLDVLESHSAQNTLVDDG------GT  424
             ++ ++A+V GT   G+ F++  G+AD+++LE G+ + +  +++A +T V++G      GT
Sbjct  391   LADSGAAVSGTRSDGKAFSIGGGQADALMLEKGSSFTLNAGDTATDTTVNGGLFTARGGT  450

Query  425   LAVSA----------GGKAT---SVTITSGGALIADSGATVEGT---NASGKFSIDGTSG  468
             LA ++          +GK+    ++TI  G+AL+ +++ T +G+   ++SG +++  T+ 
Sbjct  451   LAGTTTLNNGAILTLSGKTVNNDTLTIREGDALLQGGALTGNGSVEKSGSGTLTVSNTTL  510

Query  469   QASGLLLENGGSFTVNAGGQAGNTTVGHRGT-LTLAAGGSLSGRTQ-----LSKGAS-MV  521
                ++ L++G ++T+N +  + +  +++RGT L L+++  L+G  +     L+ GA+  +
Sbjct  511   TQKAVNLNEG-TLTLNDSTVTTDV-IAQRGTALKLTGSTVLNGAIDPTNVTLASGATWNI  568

Query  522   LNGDVVST--GDIVNAGEIRFDNQTTPNAALSRAVAKSNSPVTFHKltttnltgqggtIN  579
              +   V +  +D+ +AG+I+F   +T  + +  A  K ++           L GQ GTI+
Sbjct  569   PDNATVQSVVDDLSHAGQIHFT--STRTGKFVPATLKVKN-----------LNGQNGTIS  615

Query  580   MRVRLD-GSNASDQLVINGGQATGKTWLAFTNVGNSNLGVATTGQGIRVVDAQNGATTEE  638
             +RVR D + N +D+LVI+GG+ATGKT L + N GNS  G+AT+G+GI+VV+A NGATTEE
Sbjct  616   LRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKGIQVVEAINGATTEE  675

Query  639   GAFALSRPLQAGAFNYTLNRDSDEDWYLRSENAYRAEVPLYTSMLTQAMDYDRILAGSRS  698
             GAF  +  LQAGAFNY+LNRDSDE WYLRSENAYRAEVPLY+SMLTQAMDYDRILAGSRS
Sbjct  676   GAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLTQAMDYDRILAGSRS  735

Query  699   HQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEGDLLRTEVAGMSL  758
             HQTGV+GENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEGDLLRTEVAGMS+
Sbjct  736   HQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEGDLLRTEVAGMSV  795

Query  759   TTGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLVHTSSGLWADIVAQGTRHSMK  818
             T+GVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNL+H +SGLWADIVAQGTRHSMK
Sbjct  796   TAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASGLWADIVAQGTRHSMK  855

Query  819   ASSDNNDFRARGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDDGQDNAGYVKFGH  878
             ASSDNNDFR RGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDDGQDNA+YVKFGH
Sbjct  856   ASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDDGQDNASYVKFGH  915

Query  879   GSAQHVRAGFRLGSHNDMTFGEGTSSRDTLRDSAKHSVSELPVNWWVQPSVIRTFSSRGD  938
             GSAQHVRAGFRLGSH+DM FG GTSSRDTLR+SAKHSV ELPVNWWVQPSVIRTFSSRGD
Sbjct  916   GSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNWWVQPSVIRTFSSRGD  975

Query  939   MSMGTAAAGSNMTFSPSRNGTSLDLQAGLEARIRENITLGVQAGYAHSVSGSSAEGYNGQ  998
             MSMGTAAAGSNMTFSPS+NGTSLDLQAGLEAR+RENITLGVQA+YAHS++GSSAEGYN+Q
Sbjct  976   MSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQASYAHSINGSSAEGYNSQ  1035

Query  999   ATLNMTF  1005
             ATLN+TF
Sbjct  1036  ATLNVTF  1042


 Score =  469 bits (1766),  Expect = 5e-133, Method: Compositional matrix adjust.
 Identities = 338/479 (71%), Positives = 410/479 (86%), Gaps = 5/479 (1%)

Query  55   KLMKRHLNTSYRLVWNHITGTLVVASELARSRGKRagvavalslaavtsvpalaaDKVVQ  114
             LMKRHLNT YRLVWNHITG++VVASELAR++GKR+GVAVALSLAAVTS+P LAAD VV+
Sbjct  1    MLMKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVH  60

Query  115  AGETVNDGTLTNHDNQIVFGTANGMTISTGLELGPDSEENTGGQWIQNGGIAGNTTVTTN  174
            +GETVN+GTL NHDNQ+V GTA+G+T+STGLELGPDS+ENTGGQWI+ GG + NTTVT+N
Sbjct  61   PGETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTAN  120

Query  175  GRQVVLEGGTASDTVIRDGGGQSLNGLAVNTTLNNRGEQWVHEGGVATGTIINRDGYQSV  234
            GRQ+V  GGTASDTVIRDGGGQSLNGLAVNTTL+NRGEQWVH GG A+GTIIN+DGYQ++
Sbjct  121  GRQIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTI  180

Query  235  KSGGLATGTIINTGAEGGPDSDNSYTGQKVQGTAESTTINKNGRQIILFSGLARDTLIYA  294
            K GGLATGTI+NTGAEGGP+S+N  +GQ V GTAESTTINKNGRQ+I  SG+ARDTLIYA
Sbjct  181  KHGGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYA  240

Query  295  GGDQSVHGRALNTTLNGGYQYVHRDGLALNTVINEGGWQVVKAGGAAGNTTINQNGELRV  354
            GGDQ+VHG A NT L+GG QYVH +G A +T+IN +GWQV+K GG+A++TTINQ+G L+V
Sbjct  241  GGDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQV  300

Query  355  HAGGEATAVTQNTGGALVTSTAATVIGTNRLGNFTVENGKADGVVLESGGRLDVLESHSA  414
            +AGG A+ VTQNTGGALVTSTAATV GTNRLG F+V +GKAD VVLE+GGRLDVL +H+A
Sbjct  301  NAGGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTA  360

Query  415  QNTLVDDGGTLAVSAGGKATSVTITSGGALIADSGATVEGTNASGK-FSIDGTSGQASGL  473
             NT VDDGGTL V  GG AT+V++ +GG L+ADSGA+V GT + GK FSI+G  GQA +L
Sbjct  361  TNTRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGG--GQADAL  418

Query  474  LLENGGSFTVNAGGQAGNTTVGHRGTLTLAAGGSLSGRTQLSKGASMVLNGDVVSTGDI  532
            +LE+G+SFT+NAG+ A +TTV   G L  A GG+L+G T L++GA + L+G  V+ + +
Sbjct  419  MLEKGSSFTLNAGDTATDTTV--NGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTL  475

56) UMNK88_3699 in NC_017641


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score =  698 bits (2641),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 528/907 (59%), Positives = 667/907 (74%), Gaps = 84/907 (9%)

Query  78    GTANGMTISTGLEYGPDNEANTGGQWIQNGGIANNTTVTGGGLQRVNAGGSVSDTVIsag  137
             G A G  ++TG E GP++E  ++GQ +  GG A++TT+   G Q + ++G   DT+I AG
Sbjct  184   GLATGTIVNTGAEGGPESENVSSGQMV--GGTAESTTINKNGRQVIWSSGMARDTLIYAG  241

Query  138   ggqslqgqaVNTTLNGGEQWVHEGGIATGTVINEKGWQAVKSGAMATDTVVNTGAEGGPD  197
             G+Q+++G+A NT L+GG+Q VH+GG AT T+IN  GWQ +K G                 
Sbjct  242   GDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEG-----------------  284

Query  198   AENGDTGQFVRGNAVRTTINENGRQIVAAEGTANTTVVYAGGDQTVHGYALDTTLNGGNQ  257
                        G A +TTIN++G+  V A G A+     +GG       +  +T+ G N+
Sbjct  285   -----------GTAAHTTINQKGKLQVNAGGKASDVTQNTGGALVT---STAATVTGTNR  330

Query  258   ---YVHNGGTASGTVVNSDGWQIVKEGGLADFTIVNQKGKLQVNAGGTATNVTLKQGGAL  314
                +    G A   V++++G+  V  G  A  T V++ G L+V  GGTAT V++ +GG L
Sbjct  331   LGAFSVVEGKADNVVLENGGRLDVLTGHTATNTRVDDGGTLDVRNGGTATTVSMGNGGVL  390

Query  315   VTSTAATVTGSNRLGN-FTVENGNADGVVLESGGRLDVLEGHSAWKTLVDDG------GT  367
             ++ ++A+V+G+   G+ F++  G+AD+++LE G+ + +  G++A  T V++G      GT
Sbjct  391   LADSGAAVSGTRSDGKAFSIGGGQADALMLEKGSSFTLNAGDTATDTTVNGGLFTARGGT  450

Query  368   LA----------VSAGGKATD---VTMTSGGALIADSGATVEGT---NASGKFSIDGISG  411
             LA          ++ +GK+ +   +T+  G+AL+ +++ T +G+   ++SG +++   + 
Sbjct  451   LAGTTTLNNGAILTLSGKTVNNDTLTIREGDALLQGGALTGNGSVEKSGSGTLTVSNTTL  510

Query  412   QASGLLLENGGSFTVNAGGQAGNTTVGHRGT-LTLAAGGSLSGRTQ-----LSKGAS-MV  464
                ++ L++G ++T+N +  + +  +++RGT L L+++  L+G  +     L+ GA+  +
Sbjct  511   TQKAVNLNEG-TLTLNDSTVTTDV-IAQRGTALKLTGSTVLNGAIDPTNVTLASGATWNI  568

Query  465   LNGDVVSTC--DIVNAGEIHFDNQTTQDAVLSRAVAKGDSPVTFHKltttnltgqggtIN  522
              +   V +   D+ +AG+IHF +  T   V          P T+      NL GQ GTI+
Sbjct  569   PDNATVQSVVDDLSHAGQIHFTSTRTGKFV----------PATLK---VKNLNGQNGTIS  615

Query  523   MRVRLD-GSNTSDQLVINGGQATGKTWLAFTNVGNSNLGVATSGQGIRVVDAQNGATTEE  581
             +RVR D + N +D+LVI+GG+ATGKT L + N GNS  G+ATSG+GI+VV+A NGATTEE
Sbjct  616   LRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKGIQVVEAINGATTEE  675

Query  582   GAFALSRPLQAGAFNYTLNRDSDEDWYLRSENAYRAEVPLYASMLTQAMDYDRILAGSRS  641
             GAF  +  LQAGAFNY+LNRDSDE WYLRSENAYRAEVPLYASMLTQAMDYDRILAGSRS
Sbjct  676   GAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLTQAMDYDRILAGSRS  735

Query  642   HQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEGDLLRTEVAGMSL  701
             HQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEGDLLRTEVAGMS+
Sbjct  736   HQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEGDLLRTEVAGMSV  795

Query  702   TTGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLTHTSSGLWADIVAQGTRHSMK  761
             T+GVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNL H +SGLWADIVAQGTRHSMK
Sbjct  796   TAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASGLWADIVAQGTRHSMK  855

Query  762   ASSDNNDFRARGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDDGQDNAGYVKFGH  821
             ASSDNNDFR RGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDDGQDNA+YVKFGH
Sbjct  856   ASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDDGQDNASYVKFGH  915

Query  822   GSAQHVRAGFRLGSHNDMTFGEGTSSRDTLRDSAKHRVSELPVNWWVQPSVIRTFSSRGD  881
             GSAQHVRAGFRLGSH+DM FG GTSSRDTLR+SAKH V ELPVNWWVQPSVIRTFSSRGD
Sbjct  916   GSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNWWVQPSVIRTFSSRGD  975

Query  882   MSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQAGYAHSVSGSSAEGYNGQ  941
             MSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQA+YAHS++GSSAEGYN+Q
Sbjct  976   MSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQASYAHSINGSSAEGYNSQ  1035

Query  942   ATLNVTF  948
             ATLNVTF
Sbjct  1036  ATLNVTF  1042


 Score =  407 bits (1532),  Expect = 2e-114, Method: Compositional matrix adjust.
 Identities = 312/474 (66%), Positives = 389/474 (83%), Gaps = 6/474 (1%)

Query  1    MKRHLNTSYRLVWNHITGTLVVASELARSRGKRagvavalslaavtsvpalaaDTVVQAG  60
            MKRHLNT YRLVWNHITG++VVASELAR++GKR+GVAVALSLAAVTS+P LAAD VV++G
Sbjct  3    MKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVHPG  62

Query  61   ETVNDGTLTNHDNQIVFGTANGMTISTGLEYGPDNEANTGGQWIQNGGIANNTTVTGGGL  120
            ETVN+GTL NHDNQ+V GTA+G+T+STGLE GPD++ NTGGQWI+ GG + NTTVT+ G 
Sbjct  63   ETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTANGR  122

Query  121  QRVNAGGSVSDTVIsagggqslqgqaVNTTLNG-GEQWVHEGGIATGTVINEKGWQAVKS  179
            Q V+AGG+ SDTVI  GGGQSL+G AVNTTL+  GEQWVH GG A+GT+IN+ G Q++K 
Sbjct  123  QIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTIKH  182

Query  180  GAMATDTVVNTGAEGGPDAENGDTGQFVRGNAVRTTINENGRQIVAAEGTANTTVVYAGG  239
            G++AT+T+VNTGAEGGP++EN  +GQ V G A  TTIN NGRQ++ + G A  T++YAGG
Sbjct  183  GGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAGG  242

Query  240  DQTVHGYALDTTLNGGNQYVHNGGTASGTVVNSDGWQIVKEGGLADFTIVNQKGKLQVNA  299
            DQTVHG A +T L+GGNQYVHNGGTA+ T++N DGWQ++KEGG A  T +NQKGKLQVNA
Sbjct  243  DQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQVNA  302

Query  300  GGTATNVTLKQGGALVTSTAATVTGSNRLGNFTVENGNADGVVLESGGRLDVLEGHSAWK  359
            GG A++VT + GGALVTSTAATVTG+NRLG F+V +G+AD VVLE+GGRLDVL GH+A +
Sbjct  303  GGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN  362

Query  360  TLVDDGGTLAVSAGGKATDVTMTSGGALIADSGATVEGTNASGK-FSIDGISGQASGLLL  418
            T VDDGGTL V  GG AT V+M +GG L+ADSGA+V GT + GK FSI+G  GQA +L+L
Sbjct  363  TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGG--GQADALML  420

Query  419  ENGGSFTVNAGGQAGNTTVGHRGTLTLAAGGSLSGRTQLSKGASMVLNGDVVST  472
            E+G+SFT+NAG+ A +TTV   G L  A GG+L+G T L++GA + L+G  V+ 
Sbjct  421  EKGSSFTLNAGDTATDTTV--NGGLFTARGGTLAGTTTLNNGAILTLSGKTVNN  472

57) i14_4885a in NC_017652


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score =  696 bits (2634),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 514/919 (56%), Positives = 663/919 (73%), Gaps = 64/919 (6%)

Query  82    VQAGETVNGGTLTNHDNQIIL--GTANGMTISTGLEYGPDNEANTGGQWIQnggtanntt  139
             V++G    G  + +++ Q I   G A G  ++TG E GP++E  ++GQ +   + +    
Sbjct  161   VHGGGKAAGTIINQDGYQTIKHGGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTIN  220

Query  140   vtgggLQRVNAGGSVSDTVIsagggqslqgqaVNTTLNGGEQWVHEGGIATGTVINEKGW  199
               G  + +  ++G   DT+I AGG+Q+++G+A NT L+GG+Q VH+GG AT T+IN  GW
Sbjct  221   KNGRQVIW--SSGMARDTLIYAGGDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGW  278

Query  200   QAVKSGALATDTVVNTGAEGGPDAENGDTGQTVYGDAIRTTINKNGRQIVAAEGTANTTV  259
             Q +K G                            G A +TTIN++G+  V A G A+   
Sbjct  279   QVIKEG----------------------------GTAAHTTINQKGKLQVNAGGKASDVT  310

Query  260   VYAGGDQTVHGHALDTTLN--GGYQYVHNGGTATDTVVNSDGWQVVKDGAVAENTTVNQK  317
               +GG       A  T  N  G++  V+  G A + V++++G+  V  G  A NT V++ 
Sbjct  311   QNTGGALVTSTAATVTGTNRLGAFSVVE--GKADNVVLENGGRLDVLTGHTATNTRVDDG  368

Query  318   GKLQVNAGGTATNVTLKQGGALVTSTAATVTGSNRLGN-FAVENGKADGVVLESGGRLDV  376
             G L+V  GGTAT V++ +GG L++ ++A+V+G+   G+ F++  G+AD+++LE G+ + +
Sbjct  369   GTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEKGSSFTL  428

Query  377   LESHSAQNILVDDGGTLAVSVGGKATDVTMTSGGALIADSGATVEGT-----NASGKFSI  431
               +++A +  V++G  L  + GG  ++ T  + GA+++ SG TV+       ++ + +  
Sbjct  429   NAGDTATDTTVNGG--LFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREGDALLQG  486

Query  432   DGISGQASGLLLENGGSFTVNAGGLASNTTVGHRGTLTLAAGGSLSGRTQLSKGASMVLN  491
             ++++G++S +    +G++TV+   L+ ++   + GTLTL  + +++      +G+++ L 
Sbjct  487   GALTGNGS-VEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDS-TVTTDVIAQRGTALKLT  544

Query  492   GDVVSTGDIVNAGEIRFDNQTT---PDAALSRAVAKS---NSPVTF----------HKLT  535
             G  V  G I ++ ++ + + +T   PD A  ++V       + + F            L 
Sbjct  545   GSTVLNGAI-DPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPATLK  603

Query  536   TSNLTGQGGTINMRVSLD-GSNDSDQLVINGGQATGKTWLAFTNVGNSNLGVATTGQGIR  594
               NL GQ GTI++RV  D + N++D+LVI+GG+ATGKT L + N GNS  G+AT+G+GI+
Sbjct  604   VKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKGIQ  663

Query  595   VVDAQNGATTEEGAFALSRPLQAGAFNYTLNRDSDEDWYLRSENAYRAEVPLYTSMLTQA  654
             VV+A NGATTEEGAF  +  LQAGAFNY+LNRDSDE WYLRSENAYRAEVPLY+SMLTQA
Sbjct  664   VVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLTQA  723

Query  655   MDYDRILAGSRSHQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEG  714
             MDYDRILAGSRSHQTGV+GENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEG
Sbjct  724   MDYDRILAGSRSHQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEG  783

Query  715   DLLRTEVAGMSLTTGGYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLTHTSSGLWA  774
             DLLRTEVAGMS+T+G YGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNL H +SGLWA
Sbjct  784   DLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASGLWA  843

Query  775   DIVAQGTRHSMKASSDNNDFRARGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDD  834
             DIVAQGTRHSMKASSDNNDFR RGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDD
Sbjct  844   DIVAQGTRHSMKASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDD  903

Query  835   GQDNAGYVKFGHGSAQHVRAGFRLGSHNDMTFGEGTSSRAPLRDSAKHSVSELPVNWWVQ  894
             GQDNA+YVKFGHGSAQHVRAGFRLGSH+DM FG GTSSR  LR+SAKHSV ELPVNWWVQ
Sbjct  904   GQDNASYVKFGHGSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNWWVQ  963

Query  895   PSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRETITLGVQAGYVHS  954
             PSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRE ITLGVQA+Y HS
Sbjct  964   PSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQASYAHS  1023

Query  955   VSGSSAEGYNGQATLNMTF  973
             ++GSSAEGYN+QATLN+TF
Sbjct  1024  INGSSAEGYNSQATLNVTF  1042


 Score =  403 bits (1518),  Expect = 2e-113, Method: Compositional matrix adjust.
 Identities = 316/479 (66%), Positives = 397/479 (83%), Gaps = 6/479 (1%)

Query  24   KLMKRHLNTSYRLVWNHITGSLVVASELARSRGKRagvavalslaavtsvpalaaDTVVQ  83
             LMKRHLNT YRLVWNHITG++VVASELAR++GKR+GVAVALSLAAVTS+P LAAD VV+
Sbjct  1    MLMKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVH  60

Query  84   AGETVNGGTLTNHDNQIILGTANGMTISTGLEYGPDNEANTGGQWIQnggtannttvtgg  143
            +GETVNGGTL NHDNQ++ GTA+G+T+STGLE GPD++ NTGGQWI+ GGT+ NTTVT+ 
Sbjct  61   PGETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTAN  120

Query  144  gLQRVNAGGSVSDTVIsagggqslqgqaVNTTLNG-GEQWVHEGGIATGTVINEKGWQAV  202
            G Q V+AGG+ SDTVI  GGGQSL+G AVNTTL+  GEQWVH GG A+GT+IN+ G Q++
Sbjct  121  GRQIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTI  180

Query  203  KSGALATDTVVNTGAEGGPDAENGDTGQTVYGDAIRTTINKNGRQIVAAEGTANTTVVYA  262
            K G+LAT+T+VNTGAEGGP++EN  +GQ V G A  TTINKNGRQ++ + G A  T++YA
Sbjct  181  KHGGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYA  240

Query  263  GGDQTVHGHALDTTLNGGYQYVHNGGTATDTVVNSDGWQVVKDGAVAENTTVNQKGKLQV  322
            GGDQTVHG+A +T L+GG QYVHNGGTAT+T++N DGWQV+K+G+ A +TT+NQKGKLQV
Sbjct  241  GGDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQV  300

Query  323  NAGGTATNVTLKQGGALVTSTAATVTGSNRLGNFAVENGKADGVVLESGGRLDVLESHSA  382
            NAGG A++VT + GGALVTSTAATVTG+NRLG F+V +GKAD VVLE+GGRLDVL +H+A
Sbjct  301  NAGGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTA  360

Query  383  QNILVDDGGTLAVSVGGKATDVTMTSGGALIADSGATVEGTNASGK-FSIDGISGQASGL  441
             N  VDDGGTL V  GG AT V+M +GG L+ADSGA+V GT + GK FSI+G  GQA +L
Sbjct  361  TNTRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGG--GQADAL  418

Query  442  LLENGGSFTVNAGGLASNTTVGHRGTLTLAAGGSLSGRTQLSKGASMVLNGDVVSTGDI  500
            +LE+G+SFT+NAG+ A++TTV   G L  A GG+L+G T L++GA + L+G  V+ + +
Sbjct  419  MLEKGSSFTLNAGDTATDTTV--NGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTL  475

58) i02_4885a in NC_017651


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score =  696 bits (2634),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 514/919 (56%), Positives = 663/919 (73%), Gaps = 64/919 (6%)

Query  82    VQAGETVNGGTLTNHDNQIIL--GTANGMTISTGLEYGPDNEANTGGQWIQnggtanntt  139
             V++G    G  + +++ Q I   G A G  ++TG E GP++E  ++GQ +   + +    
Sbjct  161   VHGGGKAAGTIINQDGYQTIKHGGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTIN  220

Query  140   vtgggLQRVNAGGSVSDTVIsagggqslqgqaVNTTLNGGEQWVHEGGIATGTVINEKGW  199
               G  + +  ++G   DT+I AGG+Q+++G+A NT L+GG+Q VH+GG AT T+IN  GW
Sbjct  221   KNGRQVIW--SSGMARDTLIYAGGDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGW  278

Query  200   QAVKSGALATDTVVNTGAEGGPDAENGDTGQTVYGDAIRTTINKNGRQIVAAEGTANTTV  259
             Q +K G                            G A +TTIN++G+  V A G A+   
Sbjct  279   QVIKEG----------------------------GTAAHTTINQKGKLQVNAGGKASDVT  310

Query  260   VYAGGDQTVHGHALDTTLN--GGYQYVHNGGTATDTVVNSDGWQVVKDGAVAENTTVNQK  317
               +GG       A  T  N  G++  V+  G A + V++++G+  V  G  A NT V++ 
Sbjct  311   QNTGGALVTSTAATVTGTNRLGAFSVVE--GKADNVVLENGGRLDVLTGHTATNTRVDDG  368

Query  318   GKLQVNAGGTATNVTLKQGGALVTSTAATVTGSNRLGN-FAVENGKADGVVLESGGRLDV  376
             G L+V  GGTAT V++ +GG L++ ++A+V+G+   G+ F++  G+AD+++LE G+ + +
Sbjct  369   GTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEKGSSFTL  428

Query  377   LESHSAQNILVDDGGTLAVSVGGKATDVTMTSGGALIADSGATVEGT-----NASGKFSI  431
               +++A +  V++G  L  + GG  ++ T  + GA+++ SG TV+       ++ + +  
Sbjct  429   NAGDTATDTTVNGG--LFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREGDALLQG  486

Query  432   DGISGQASGLLLENGGSFTVNAGGLASNTTVGHRGTLTLAAGGSLSGRTQLSKGASMVLN  491
             ++++G++S +    +G++TV+   L+ ++   + GTLTL  + +++      +G+++ L 
Sbjct  487   GALTGNGS-VEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDS-TVTTDVIAQRGTALKLT  544

Query  492   GDVVSTGDIVNAGEIRFDNQTT---PDAALSRAVAKS---NSPVTF----------HKLT  535
             G  V  G I ++ ++ + + +T   PD A  ++V       + + F            L 
Sbjct  545   GSTVLNGAI-DPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPATLK  603

Query  536   TSNLTGQGGTINMRVSLD-GSNDSDQLVINGGQATGKTWLAFTNVGNSNLGVATTGQGIR  594
               NL GQ GTI++RV  D + N++D+LVI+GG+ATGKT L + N GNS  G+AT+G+GI+
Sbjct  604   VKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKGIQ  663

Query  595   VVDAQNGATTEEGAFALSRPLQAGAFNYTLNRDSDEDWYLRSENAYRAEVPLYTSMLTQA  654
             VV+A NGATTEEGAF  +  LQAGAFNY+LNRDSDE WYLRSENAYRAEVPLY+SMLTQA
Sbjct  664   VVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLTQA  723

Query  655   MDYDRILAGSRSHQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEG  714
             MDYDRILAGSRSHQTGV+GENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEG
Sbjct  724   MDYDRILAGSRSHQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEG  783

Query  715   DLLRTEVAGMSLTTGGYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLTHTSSGLWA  774
             DLLRTEVAGMS+T+G YGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNL H +SGLWA
Sbjct  784   DLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASGLWA  843

Query  775   DIVAQGTRHSMKASSDNNDFRARGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDD  834
             DIVAQGTRHSMKASSDNNDFR RGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDD
Sbjct  844   DIVAQGTRHSMKASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDD  903

Query  835   GQDNAGYVKFGHGSAQHVRAGFRLGSHNDMTFGEGTSSRAPLRDSAKHSVSELPVNWWVQ  894
             GQDNA+YVKFGHGSAQHVRAGFRLGSH+DM FG GTSSR  LR+SAKHSV ELPVNWWVQ
Sbjct  904   GQDNASYVKFGHGSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNWWVQ  963

Query  895   PSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRETITLGVQAGYVHS  954
             PSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRE ITLGVQA+Y HS
Sbjct  964   PSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQASYAHS  1023

Query  955   VSGSSAEGYNGQATLNMTF  973
             ++GSSAEGYN+QATLN+TF
Sbjct  1024  INGSSAEGYNSQATLNVTF  1042


 Score =  403 bits (1518),  Expect = 2e-113, Method: Compositional matrix adjust.
 Identities = 316/479 (66%), Positives = 397/479 (83%), Gaps = 6/479 (1%)

Query  24   KLMKRHLNTSYRLVWNHITGSLVVASELARSRGKRagvavalslaavtsvpalaaDTVVQ  83
             LMKRHLNT YRLVWNHITG++VVASELAR++GKR+GVAVALSLAAVTS+P LAAD VV+
Sbjct  1    MLMKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVH  60

Query  84   AGETVNGGTLTNHDNQIILGTANGMTISTGLEYGPDNEANTGGQWIQnggtannttvtgg  143
            +GETVNGGTL NHDNQ++ GTA+G+T+STGLE GPD++ NTGGQWI+ GGT+ NTTVT+ 
Sbjct  61   PGETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTAN  120

Query  144  gLQRVNAGGSVSDTVIsagggqslqgqaVNTTLNG-GEQWVHEGGIATGTVINEKGWQAV  202
            G Q V+AGG+ SDTVI  GGGQSL+G AVNTTL+  GEQWVH GG A+GT+IN+ G Q++
Sbjct  121  GRQIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTI  180

Query  203  KSGALATDTVVNTGAEGGPDAENGDTGQTVYGDAIRTTINKNGRQIVAAEGTANTTVVYA  262
            K G+LAT+T+VNTGAEGGP++EN  +GQ V G A  TTINKNGRQ++ + G A  T++YA
Sbjct  181  KHGGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYA  240

Query  263  GGDQTVHGHALDTTLNGGYQYVHNGGTATDTVVNSDGWQVVKDGAVAENTTVNQKGKLQV  322
            GGDQTVHG+A +T L+GG QYVHNGGTAT+T++N DGWQV+K+G+ A +TT+NQKGKLQV
Sbjct  241  GGDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQV  300

Query  323  NAGGTATNVTLKQGGALVTSTAATVTGSNRLGNFAVENGKADGVVLESGGRLDVLESHSA  382
            NAGG A++VT + GGALVTSTAATVTG+NRLG F+V +GKAD VVLE+GGRLDVL +H+A
Sbjct  301  NAGGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTA  360

Query  383  QNILVDDGGTLAVSVGGKATDVTMTSGGALIADSGATVEGTNASGK-FSIDGISGQASGL  441
             N  VDDGGTL V  GG AT V+M +GG L+ADSGA+V GT + GK FSI+G  GQA +L
Sbjct  361  TNTRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGG--GQADAL  418

Query  442  LLENGGSFTVNAGGLASNTTVGHRGTLTLAAGGSLSGRTQLSKGASMVLNGDVVSTGDI  500
            +LE+G+SFT+NAG+ A++TTV   G L  A GG+L+G T L++GA + L+G  V+ + +
Sbjct  419  MLEKGSSFTLNAGDTATDTTV--NGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTL  475

59) ETEC_2119 in NC_017633


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score =  693 bits (2622),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 526/929 (57%), Positives = 680/929 (74%), Gaps = 84/929 (9%)

Query  57    VQAGETVSGGTLTNHDNQIVF--GTANGMTISSGLEYGPDNEANTGGQWIQNGGIANNTT  114
             V++G   +G  + +++ Q +   G A G  +++G E GP++E  ++GQ +  GG A++TT
Sbjct  161   VHGGGKAAGTIINQDGYQTIKHGGLATGTIVNTGAEGGPESENVSSGQMV--GGTAESTT  218

Query  115   VTGGGLQRVNAGGSVSDTVIsagggqslqgqaVNTTLNGGEQWVHEGGIATGTVINEKGW  174
             +   G Q + ++G   DT+I AGG+Q+++G+A NT L+GG+Q VH+GG AT T+IN  GW
Sbjct  219   INKNGRQVIWSSGMARDTLIYAGGDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGW  278

Query  175   QAVKSGAMATDTVVNTGAEGGPDAENGDTGQFVRGNAVRTTINKNGRQIVAAEGTANTTV  234
             Q +K G                            G A +TTIN++G+  V A G A+   
Sbjct  279   QVIKEG----------------------------GTAAHTTINQKGKLQVNAGGKASDVT  310

Query  235   VYAGGDQTVHGHALDTTLN--GGYQYVHNGGTASGTVVNSDGWQIIKEGGLADFTTVNQK  292
               +GG       A  T  N  G++  V+  G A   V++++G+  +  G  A  T V++ 
Sbjct  311   QNTGGALVTSTAATVTGTNRLGAFSVVE--GKADNVVLENGGRLDVLTGHTATNTRVDDG  368

Query  293   GKLQVNAGGTATHVTLKQGGALVTSTAATVLGSNRLGN-FTVENGKADGVVLESGGRLDV  351
             G L+V  GGTAT V++ +GG L++ ++A+V G+   G+ F++  G+AD+++LE G+ + +
Sbjct  369   GTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEKGSSFTL  428

Query  352   LEGHSAQKTRVDDG------GTLA----------VSAGGKATG---VTMTSGGALIADSG  392
               G++A  T V++G      GTLA          ++ +GK+     +T+  G+AL+ +++
Sbjct  429   NAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREGDALLQGGA  488

Query  393   ATVEGT---NASGKFSIDGTSGQASGLLLENGGSFTVNAGGQASNTTVGHRGT-LMLAAG  448
              T +G+   ++SG +++  T+    ++ L++G ++T+N +  +++  +++RGT L L+++
Sbjct  489   LTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEG-TLTLNDSTVTTDV-IAQRGTALKLTGS  546

Query  449   GSLSGRTQ-----LSKGAS-MVLNGDVVST--GDIVNAGEIHFDNQTTQDAVLSRAVAKS  500
               L+G  +     L+ GA+  + +   V +  +D+ +AG+IHF +  T   V        
Sbjct  547   TVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFV--------  598

Query  501   NSPVTFHKltttnltgqggtINMRVSLD-GSNASDQLVINGGQATGKTWLAFTNVGNSNL  559
               P T+      NL GQ GTI++RV  D + N +D+LVI+GG+ATGKT L + N GNS  
Sbjct  599   --PATLK---VKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSAS  653

Query  560   GVATSGQGIRVVDAQNGATTEEGAFALSRPLQAGAFNYTLNRDSDEDWYLRSENAYRAEV  619
             G+ATSG+GI+VV+A NGATTEEGAF  +  LQAGAFNY+LNRDSDE WYLRSENAYRAEV
Sbjct  654   GLATSGKGIQVVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAEV  713

Query  620   PLYTSMLTQAMDYDRILAGSRSHQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESS  679
             PLY+SMLTQAMDYDRILAGSRSHQTGV+GENNSVRLSIQGGHLGHDNNGGIARGATPESS
Sbjct  714   PLYASMLTQAMDYDRILAGSRSHQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPESS  773

Query  680   GSYGFVRLEGDLLRTEVAGMSLTTGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLN  739
             GSYGFVRLEGDLLRTEVAGMS+T+GVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLN
Sbjct  774   GSYGFVRLEGDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLN  833

Query  740   LTHTSSGLWADIVAQGTRHSMKASSDNNDFRARGWGWLGSLETGLPFSITDNLMLEPQLH  799
             L H +SGLWADIVAQGTRHSMKASSDNNDFR RGWGWLGSLETGLPFSITDNLMLEPQL+
Sbjct  834   LIHNASGLWADIVAQGTRHSMKASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQ  893

Query  800   YTWQGLSLDDGQDNAGYVKFGHGSAQHVRAGFRLGSHNDMTFGEGTSSRDTLRDSTKHGV  859
             YTWQGLSLDDGQDNA+YVKFGHGSAQHVRAGFRLGSH+DM FG GTSSRDTLR+S+KH+V
Sbjct  894   YTWQGLSLDDGQDNASYVKFGHGSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSV  953

Query  860   SELPVNWWVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSRNGTSLDLQAGLEARVRENIT  919
              ELPVNWWVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPS+NGTSLDLQAGLEARVRENIT
Sbjct  954   RELPVNWWVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENIT  1013

Query  920   LGVQAGYAHSVSGNSAEGYNGQATLNVTF  948
             LGVQA+YAHS++G+SAEGYN+QATLNVTF
Sbjct  1014  LGVQASYAHSINGSSAEGYNSQATLNVTF  1042


 Score =  450 bits (1697),  Expect = 2e-127, Method: Compositional matrix adjust.
 Identities = 313/477 (66%), Positives = 394/477 (83%), Gaps = 6/477 (1%)

Query  1    MKRHLNTSYRLVWNHITGTLVVASELARSRGKRAGVAIALSLAAVTSVPALAADTVVQAG  60
            MKRHLNT YRLVWNHITG++VVASELAR++GKR+GVA+ALSLAAVTS+P LAAD VV++G
Sbjct  3    MKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVHPG  62

Query  61   ETVSGGTLTNHDNQIVFGTANGMTISSGLEYGPDNEANTGGQWIQNGGIANNTTVTGGGL  120
            ETV+GGTL NHDNQ+V GTA+G+T+S+GLE GPD++ NTGGQWI+ GG + NTTVT+ G 
Sbjct  63   ETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTANGR  122

Query  121  QRVNAGGSVSDTVIsagggqslqgqaVNTTLNG-GEQWVHEGGIATGTVINEKGWQAVKS  179
            Q V+AGG+ SDTVI  GGGQSL+G AVNTTL+  GEQWVH GG A+GT+IN+ G Q++K 
Sbjct  123  QIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTIKH  182

Query  180  GAMATDTVVNTGAEGGPDAENGDTGQFVRGNAVRTTINKNGRQIVAAEGTANTTVVYAGG  239
            G++AT+T+VNTGAEGGP++EN  +GQ V G A  TTINKNGRQ++ + G A  T++YAGG
Sbjct  183  GGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAGG  242

Query  240  DQTVHGHALDTTLNGGYQYVHNGGTASGTVVNSDGWQIIKEGGLADFTTVNQKGKLQVNA  299
            DQTVHG+A +T L+GG QYVHNGGTA+ T++N DGWQ+IKEGG A  TT+NQKGKLQVNA
Sbjct  243  DQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQVNA  302

Query  300  GGTATHVTLKQGGALVTSTAATVLGSNRLGNFTVENGKADGVVLESGGRLDVLEGHSAQK  359
            GG A++VT + GGALVTSTAATV G+NRLG F+V +GKAD VVLE+GGRLDVL GH+A +
Sbjct  303  GGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN  362

Query  360  TRVDDGGTLAVSAGGKATGVTMTSGGALIADSGATVEGTNASGK-FSIDGTSGQASGLLL  418
            TRVDDGGTL V  GG AT V+M +GG L+ADSGA+V GT + GK FSI+G  GQA +L+L
Sbjct  363  TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGG--GQADALML  420

Query  419  ENGGSFTVNAGGQASNTTVGHRGTLMLAAGGSLSGRTQLSKGASMVLNGDVVSTGDI  475
            E+G+SFT+NAG+ A++TTV   G L  A GG+L+G T L++GA + L+G  V+ + +
Sbjct  421  EKGSSFTLNAGDTATDTTV--NGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTL  475

60) ECO103_4895 in NC_013353


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score =  691 bits (2613),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 495/836 (60%), Positives = 620/836 (75%), Gaps = 80/836 (9%)

Query  148   NTTLNGGEQWVHEGGIATGTVINEKGWQAIKSGAVATDTVVNTGAEGGPDAENGDTGQTV  207
             NT L+GG+Q VH+GG AT T+IN  GWQ IK G                           
Sbjct  252   NTRLEGGNQYVHNGGTATETLINRDGWQVIKEG---------------------------  284

Query  208   YGDAVRTTINKNGRQIVAAEGTANTTVVYAGGDQTVHGHALDTTLN--GGYQYVHNGGTA  265
              G A +TTIN++G+  V A G A+     +GG       A  T  N  G++  V+  G A
Sbjct  285   -GTAAHTTINQKGKLQVNAGGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVE--GKA  341

Query  266   SGTVVNSDGWQIIKEGGLADFTTVNQKGKLQVNAGGTATNVTLKQGGALVTSTAATVLGS  325
                V++++G+  +  G  A  T V++ G L+V  GGTAT V++ +GG L++ ++A+V G+
Sbjct  342   DNVVLENGGRLDVLTGHTATNTRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGT  401

Query  326   NRLGN-FTVENGKADGVVLESGGRLDVLEGHSAWKTLVDDG------GTLA---------  369
                G+ F++  G+AD+++LE G+ + +  G++A  T V++G      GTLA         
Sbjct  402   RSDGKAFSIGGGQADALMLEKGSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGA  461

Query  370   -VSAGGKATG---VTMTSGGALIADSGATVEGT---NASGKFSIDGISGQASGLLLENGG  422
              ++ +GK+     +T+  G+AL+ +++ T +G+   ++SG +++   +    ++ L++G 
Sbjct  462   ILTLSGKTVNNDTLTIREGDALLQGGALTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEG-  520

Query  423   SFTVNAGGQASNTTVGHRGT-LMLAAGGSLSGRTQ-----LSKGAS-MVLNGDVVST--G  473
             ++T+N +  +++  +++RGT L L+++  L+G  +     L+ GA+  + +   V +  +
Sbjct  521   TLTLNDSTVTTDV-IAQRGTALKLTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVD  579

Query  474   DIVNAGEIYFDNQTTPDAVLSRAVAKGNAPVTFHKLTTSNLTGQGGTINMRVRLD-GSNT  532
             D+ +AG+I F +  T   V          P T   L   NL GQ GTI++RVR D + N 
Sbjct  580   DLSHAGQIHFTSTRTGKFV----------PAT---LKVKNLNGQNGTISLRVRPDMAQNN  626

Query  533   SDQLVINGGQATGKTWLAFTNVGNSNLGVATSGQGIRVVDAQNGATTEEGAFALSRPLQA  592
             +D+LVI+GG+ATGKT L + N GNS  G+ATSG+GI+VV+A NGATTEEGAF  +  LQA
Sbjct  627   ADRLVIDGGRATGKTILNLVNAGNSASGLATSGKGIQVVEAINGATTEEGAFIQGNKLQA  686

Query  593   GAFNYTLNRDSDEDWYLRSENAYRAEVPLYASMLTQAMDYDRILAGSRSHQSGVSGENNS  652
             GAFNY+LNRDSDE WYLRSENAYRAEVPLYASMLTQAMDYDRILAGSRSHQ+GVSGENNS
Sbjct  687   GAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLTQAMDYDRILAGSRSHQTGVSGENNS  746

Query  653   VRLSIQGGHLGHDNNSGIARGATPESNGSYGFVRLEGDLLRTEVAGMSLTTGVYGAAGHS  712
             VRLSIQGGHLGHDNN+GIARGATPES+GSYGFVRLEGDLLRTEVAGMS+T+GVYGAAGHS
Sbjct  747   VRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEGDLLRTEVAGMSVTAGVYGAAGHS  806

Query  713   SVDVKDDDGSRAGTVRDDAGSLGGYLNLTHTSSGLWADIVAQGTRHSMKASSDNNDFRAR  772
             SVDVKDDDGSRAGTVRDDAGSLGGYLNL H +SGLWADIVAQGTRHSMKASSDNNDFR R
Sbjct  807   SVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASGLWADIVAQGTRHSMKASSDNNDFRVR  866

Query  773   GWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDDGQDNAGYVKFGHGSTQHVRAGFR  832
             GWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDDGQDNA+YVKFGHGS+QHVRAGFR
Sbjct  867   GWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDDGQDNASYVKFGHGSAQHVRAGFR  926

Query  833   LGSHNDMTFGEGTSSRDTLRDSTKHGVSELPVNWWVQPSVIRTFSSRGDLSMGTAAAGSN  892
             LGSH+DM FG GTSSRDTLR+S+KH+V ELPVNWWVQPSVIRTFSSRGD+SMGTAAAGSN
Sbjct  927   LGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNWWVQPSVIRTFSSRGDMSMGTAAAGSN  986

Query  893   MTFSPSRNGTSLDLQAGLEARVRENITLGVQAGYAHSVSGSSAEGYNGQATLNVTF  948
             MTFSPS+NGTSLDLQAGLEARVRENITLGVQA+YAHS++GSSAEGYN+QATLNVTF
Sbjct  987   MTFSPSQNGTSLDLQAGLEARVRENITLGVQASYAHSINGSSAEGYNSQATLNVTF  1042


 Score =  400 bits (1505),  Expect = 2e-112, Method: Compositional matrix adjust.
 Identities = 317/487 (66%), Positives = 400/487 (83%), Gaps = 7/487 (1%)

Query  1    MKRHLNTSYRLVWNHITGTLVVASELARSRGKRagvavalslaavtsvpalaaDTVVQAG  60
            MKRHLNT YRLVWNHITG++VVASELAR++GKR+GVAVALSLAAVTS+P LAAD VV++G
Sbjct  3    MKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVHPG  62

Query  61   ETVSGGTLVNHDNQIVFGTANGMTISTGLEYGPDNEANTGGQWIQnggtannttvtgggL  120
            ETV+GGTLVNHDNQ+V GTA+G+T+STGLE GPD++ NTGGQWI+ GGT+ NTTVT+ G 
Sbjct  63   ETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTANGR  122

Query  121  QRVNTGGSVSDTVIsagggqslqgqaVNTTLNG-GEQWVHEGGIATGTVINEKGWQAIKS  179
            Q V++GG+ SDTVI  GGGQSL+G AVNTTL+  GEQWVH GG A+GT+IN+ G Q+IK 
Sbjct  123  QIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTIKH  182

Query  180  GAVATDTVVNTGAEGGPDAENGDTGQTVYGDAVRTTINKNGRQIVAAEGTANTTVVYAGG  239
            G++AT+T+VNTGAEGGP++EN  +GQ V G A  TTINKNGRQ++ + G A  T++YAGG
Sbjct  183  GGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAGG  242

Query  240  DQTVHGHALDTTLNGGYQYVHNGGTASGTVVNSDGWQIIKEGGLADFTTVNQKGKLQVNA  299
            DQTVHG+A +T L+GG QYVHNGGTA+ T++N DGWQ+IKEGG A  TT+NQKGKLQVNA
Sbjct  243  DQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQVNA  302

Query  300  GGTATNVTLKQGGALVTSTAATVLGSNRLGNFTVENGKADGVVLESGGRLDVLEGHSAWK  359
            GG A++VT + GGALVTSTAATV G+NRLG F+V +GKAD VVLE+GGRLDVL GH+A +
Sbjct  303  GGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN  362

Query  360  TLVDDGGTLAVSAGGKATGVTMTSGGALIADSGATVEGTNASGK-FSIDGISGQASGLLL  418
            T VDDGGTL V  GG AT V+M +GG L+ADSGA+V GT + GK FSI+G  GQA +L+L
Sbjct  363  TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGG--GQADALML  420

Query  419  ENGGSFTVNAGGQASNTTVGHRGTLMLAAGGSLSGRTQLSKGASMVLNGDVVSTGDI-VN  477
            E+G+SFT+NAG+ A++TTV   G L  A GG+L+G T L++GA + L+G  V+ + + + 
Sbjct  421  EKGSSFTLNAGDTATDTTV--NGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIR  478

Query  478  AGEIYFD  484
             G+  ++
Sbjct  479  EGDALLQ  485

61) flu in NC_017633


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score =  691 bits (2613),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 525/930 (57%), Positives = 679/930 (74%), Gaps = 86/930 (9%)

Query  98    VQAGETVSGGTLENHDNQIVF--GTTNGITISTGLEYGPDNEANTGGQWVQDGGTASNTT  155
             V++G   +G  +++++ Q +   G + G  ++TG E GP++E  ++GQ V  GGTA +TT
Sbjct  161   VHGGGKAAGTIINQDGYQTIKHGGLATGTIVNTGAEGGPESENVSSGQMV--GGTAESTT  218

Query  156   ISSGGLQFVGAGGKATDTIINEGGGQSLKGLALNTTLNGGEQWMHEGAIATGTVINDKGW  215
             I+  G Q + ++G A DT+I  GG+Q++ G A NT L+GG+Q +H+G+ AT T+IN  GW
Sbjct  219   INKNGRQVIWSSGMARDTLIYAGGDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGW  278

Query  216   QVVKPGAVATDTVVNTGAEGGPDAENADTGQFVRGDAVRTTINKNGRQIvvatgvanttv  275
             QV+K G                            G A +TTIN++G+ + V +G   + V
Sbjct  279   QVIKEG----------------------------GTAAHTTINQKGK-LQVNAGGKASDV  309

Query  276   vyaggDQTVHGYALDTTLNGGNQ---YVHNGGTASDTVVNSDGWQIIKEGGLADFTTVNQ  332
                 G+  V + A  +T+ G N+   +    G A + V++++G+  +  G  A  T V++
Sbjct  310   TQNTGGALVTSTA--ATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTATNTRVDD  367

Query  333   KGKLQVNAGGTATNVTLKQGGALVTSTAATVLGSNRLGN-FTVENGKADGVVLESGGRLD  391
              G L+V  GGTAT V++ +GG L++ ++A+V G+   G+ F++  G+AD+++LE G+ + 
Sbjct  368   GGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEKGSSFT  427

Query  392   VLEGHSAWKTLVD------------------DGGILAVSAGGKATD-VTMTSGGALIADS  432
             +  G++A  T V+                  +G+IL++S+     D +T+  G+AL+ ++
Sbjct  428   LNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREGDALLQGG  487

Query  433   GATVEGT---NASGKFSIDGISGQASGLLLENGGSFTVNAGGQAGNTTVGHRGT-LTLAA  488
             + T +G+   ++SG +++   +    ++ L++G ++T+N +  + +  +++RGT L L++
Sbjct  488   ALTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEG-TLTLNDSTVTTDV-IAQRGTALKLTG  545

Query  489   GGSLSGRTQ-----LSKGAS-MVLNGDVVST--GDIVNAGEIHFDNQTTQDAVLSRAVAK  540
             +  L+G  +     L+ GA+  + +   V +  +D+ +AG+IHF +  T   V       
Sbjct  546   STVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFV-------  598

Query  541   SNSPVTFHKltttnltgqggtINMRVSLD-GSNASDQLVINGGQATGKTWLAFTNVGNSN  599
                P T+      NL GQ GTI++RV  D + N +D+LVI+GG+ATGKT L + N GNS 
Sbjct  599   ---PATLK---VKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSA  652

Query  600   LGVATSGQGIRVVDAQNGATTEEGAFALSRPLQAGAFNYTLNRDSDEDWYLRSENAYRAE  659
              G+ATSG+GI+VV+A NGATTEEGAF  +  LQAGAFNY+LNRDSDE WYLRSENAYRAE
Sbjct  653   SGLATSGKGIQVVEAINGATTEEGAFIQGNKLQAGAFNYSLNRDSDESWYLRSENAYRAE  712

Query  660   VPLYTSMLTQAMDYDRILAGSRSHQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPES  719
             VPLY+SMLTQAMDYDRILAGSRSHQTGV+GENNSVRLSIQGGHLGHDNNGGIARGATPES
Sbjct  713   VPLYASMLTQAMDYDRILAGSRSHQTGVSGENNSVRLSIQGGHLGHDNNGGIARGATPES  772

Query  720   SGSYGFVRLEGDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYL  779
             SGSYGFVRLEGDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYL
Sbjct  773   SGSYGFVRLEGDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYL  832

Query  780   NLVHTSSGLWADIVAQGTRHSMKASTDNNDFRARGWGWLGSLETGLPFSITDNLMLEPQL  839
             NL+H +SGLWADIVAQGTRHSMKAS+DNNDFR RGWGWLGSLETGLPFSITDNLMLEPQL
Sbjct  833   NLIHNASGLWADIVAQGTRHSMKASSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQL  892

Query  840   QYTWQGLSLDDGKDNAGYVKFGHGSAQHVRAGFRLGSHNDMTFGEGTSSRAPLRDSAKHS  899
             QYTWQGLSLDDG+DNA+YVKFGHGSAQHVRAGFRLGSH+DM FG GTSSR  LR+SAKHS
Sbjct  893   QYTWQGLSLDDGQDNASYVKFGHGSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHS  952

Query  900   MRELPVNWWVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSRNGTSLDLQAGLEARVRENI  959
             +RELPVNWWVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPS+NGTSLDLQAGLEARVRENI
Sbjct  953   VRELPVNWWVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENI  1012

Query  960   TLGVQAGYAHSVIGSSAEGYNGQATLNVTF  989
             TLGVQA+YAHS+ GSSAEGYN+QATLNVTF
Sbjct  1013  TLGVQASYAHSINGSSAEGYNSQATLNVTF  1042


 Score =  435 bits (1639),  Expect = 6e-123, Method: Compositional matrix adjust.
 Identities = 307/479 (65%), Positives = 395/479 (83%), Gaps = 6/479 (1%)

Query  40   KLMKRHLNTSYRLVWNHITGTLVVASELARSRGKRTGVAVALSLATATSVPALAADSVVQ  99
             LMKRHLNT YRLVWNHITG++VVASELAR++GKR GVAVALSLA+ TS+P LAAD VV+
Sbjct  1    MLMKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVH  60

Query  100  AGETVSGGTLENHDNQIVFGTTNGITISTGLEYGPDNEANTGGQWVQDGGTASNTTISSG  159
            +GETV+GGTL NHDNQ+V GT++G+T+STGLE GPD++ NTGGQW++ GGT+ NTT+++ 
Sbjct  61   PGETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTAN  120

Query  160  GLQFVGAGGKATDTIINEGGGQSLKGLALNTTLNG-GEQWMHEGAIATGTVINDKGWQVV  218
            G Q+V AGG A+DT+I +GGGQSL+GLA+NTTL+  GEQW+H G+ A+GT+IN+ G Q +
Sbjct  121  GRQIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTI  180

Query  219  KPGAVATDTVVNTGAEGGPDAENADTGQFVRGDAVRTTINKNGRQIvvatgvanttvvya  278
            K G++AT+T+VNTGAEGGP++EN  +GQ V G A  TTINKNGRQ++ ++G+A  T++YA
Sbjct  181  KHGGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYA  240

Query  279  ggDQTVHGYALDTTLNGGNQYVHNGGTASDTVVNSDGWQIIKEGGLADFTTVNQKGKLQV  338
            GGDQTVHG A +T L+GGNQYVHNGGTA++T++N DGWQ+IKEGG A  TT+NQKGKLQV
Sbjct  241  GGDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQV  300

Query  339  NAGGTATNVTLKQGGALVTSTAATVLGSNRLGNFTVENGKADGVVLESGGRLDVLEGHSA  398
            NAGG A++VT + GGALVTSTAATV G+NRLG F+V +GKAD VVLE+GGRLDVL GH+A
Sbjct  301  NAGGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTA  360

Query  399  WKTLVDDGGILAVSAGGKATDVTMTSGGALIADSGATVEGTNASGK-FSIDGISGQASGL  457
             +T VDDGG L V  GG AT V+M +GG L+ADSGA+V GT + GK FSI+G  GQA +L
Sbjct  361  TNTRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGG--GQADAL  418

Query  458  LLENGGSFTVNAGGQAGNTTVGHRGTLTLAAGGSLSGRTQLSKGASMVLNGDVVSTGDI  516
            +LE+G+SFT+NAG+ A +TTV   G L  A GG+L+G T L++GA + L+G  V+ + +
Sbjct  419  MLEKGSSFTLNAGDTATDTTV--NGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTL  475

62) flu in NC_013941


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score =  675 bits (2554),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 479/814 (59%), Positives = 599/814 (74%), Gaps = 60/814 (7%)

Query  148   NTTLNGGEQWVHEGGIATGTVINEKGWQAIKSGAVATDTVVNTGAEGGPDAENGDTGQTV  207
             NT L+GG+Q VH+GG AT T+IN  GWQ IK G                           
Sbjct  252   NTRLEGGNQYVHNGGTATETLINRDGWQVIKEG---------------------------  284

Query  208   YGDAVRTTINKNGRQIVAAEGTANTTVVYAGGDQTVHGHALDTTLN--GGYQYVHNGGTA  265
              G A +TTIN++G+  V A G A+     +GG       A  T  N  G++  V+  G A
Sbjct  285   -GTAAHTTINQKGKLQVNAGGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVE--GKA  341

Query  266   SGTVVNSDGWQIIKEGGLADFTTVNQKGKLQVNAGGTATNVTLKQGGALVSSTAATVLGS  325
                V++++G+  +  G  A  T V++ G L+V  GGTAT V++ +GG L++ ++A+V G+
Sbjct  342   DNVVLENGGRLDVLTGHTATNTRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGT  401

Query  326   NRLGN-FTVENGKADGVVLESGGRLDVLEGHSAWKTLVDDGGTLAVSAGGKATGVTMTSG  384
                G+ F++  G+AD+++LE G+ + +  G++A  T V++G  L  + GG  +G T  + 
Sbjct  402   RSDGKAFSIGGGQADALMLEKGSSFTLNAGDTATDTTVNGG--LFTARGGTLAGTTTLNN  459

Query  385   GALIADSGATVEGTNASGK-----FSIDGISGQASGLLLENGGSFTVNAGGQASNTTVGH  439
             GA+++ SG TV+    + +     +  ++++G++S +    +G++TV+    + ++   +
Sbjct  460   GAILTLSGKTVNNDTLTIREGDALLQGGALTGNGS-VEKSGSGTLTVSNTTLTQKAVNLN  518

Query  440   RGTLMLAAGGSLSGRTQLSKGASMVLNGNVVSTGDIVNAGEIYFDNQTT---PDAVLSRA  496
              GTL L  + +++      +G+++ L G+ V  G I ++ ++ + + +T   PD    ++
Sbjct  519   EGTLTLNDS-TVTTDVIAQRGTALKLTGSTVLNGAI-DPTNVTLASGATWNIPDNATVQS  576

Query  497   VAKG---NAPVTFH----------KLTTSNLTGQGGTINMRVRLD-GSNTSDQLVINGGQ  542
             V  +    + + F            L   NL GQ GTI++RVR D + N +D+LVI+GG+
Sbjct  577   VVDDLSHAGQIHFTSTRTGKFVPATLKVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGR  636

Query  543   ATGKTWLAFTNVGNSNLGVATSGQGIRVVDAQNGATTEEGAFALSRPLQAGAFNYTLNRD  602
             ATGKT L + N GNS  G+ATSG+GI+VV+A NGATTEEGAF  +  LQAGAFNY+LNRD
Sbjct  637   ATGKTILNLVNAGNSASGLATSGKGIQVVEAINGATTEEGAFIQGNKLQAGAFNYSLNRD  696

Query  603   SDEDWYLRSENAYRAEVPLYASMLTQAMDYDRILAGSRSHQSGVSGENNSVRLSIQGGHL  662
             SDE WYLRSENAYRAEVPLYASMLTQAMDYDRILAGSRSHQ+GVSGENNSVRLSIQGGHL
Sbjct  697   SDESWYLRSENAYRAEVPLYASMLTQAMDYDRILAGSRSHQTGVSGENNSVRLSIQGGHL  756

Query  663   GHDNNGGIARGATPESNGSYGFVRLEGDLLRTEVAGMSLTTGVYGAAGHSSVDVKDDDGS  722
             GHDNNGGIARGATPES+GSYGFVRLEGDLLRTEVAGMS+T+GVYGAAGHSSVDVKDDDGS
Sbjct  757   GHDNNGGIARGATPESSGSYGFVRLEGDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGS  816

Query  723   RAGTVRDDAGSLGGYLNLTHTSSGLWADIVAQGTRHSMKASSDNNDFRARGWGWLGSLET  782
             RAGTVRDDAGSLGGYLNL H +SGLWADIVAQGTRHSMKASSDNNDFR RGWGWLGSLET
Sbjct  817   RAGTVRDDAGSLGGYLNLIHNASGLWADIVAQGTRHSMKASSDNNDFRVRGWGWLGSLET  876

Query  783   GLPFSITDNLMLEPQLQYTWQGLSLDDGQDNAGYVKFGHGSTQHVRAGFRLGSHNDMTFG  842
             GLPFSITDNLMLEPQLQYTWQGLSLDDGQDNA+YVKFGHGS+QHVRAGFRLGSH+DM FG
Sbjct  877   GLPFSITDNLMLEPQLQYTWQGLSLDDGQDNASYVKFGHGSAQHVRAGFRLGSHHDMNFG  936

Query  843   EGTSSRDTLRDSTKHGVSELPVNWWVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSRNGT  902
              GTSSRDTLR+S+KH+V ELPVNWWVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPS+NGT
Sbjct  937   KGTSSRDTLRGSAKHSVRELPVNWWVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGT  996

Query  903   SLDLQAGLEARVRENITLGVQAGYAHSVSGSSAE  936
             SLDLQAGLEARVRENITLGVQA+YAHS++GSSAE
Sbjct  997   SLDLQAGLEARVRENITLGVQASYAHSINGSSAE  1030


 Score =  400 bits (1505),  Expect = 2e-112, Method: Compositional matrix adjust.
 Identities = 315/477 (67%), Positives = 396/477 (84%), Gaps = 6/477 (1%)

Query  1    MKRHLNTSYRLVWNHITGTLVVASELARSRGKRagvavalslaavtsvpalaaDTVVQAG  60
            MKRHLNT YRLVWNHITG++VVASELAR++GKR+GVAVALSLAAVTS+P LAAD VV++G
Sbjct  3    MKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVHPG  62

Query  61   ETVSGGTLVNHDNQIVFGTANGMTISTGLEYGPDNEANTGGQWIQnggtannttvtgggL  120
            ETV+GGTLVNHDNQ+V GTA+G+T+STGLE GPD++ NTGGQWI+ GGT+ NTTVT+ G 
Sbjct  63   ETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTANGR  122

Query  121  QRVNTGGSVSDTVIsagggqslqgqaVNTTLNG-GEQWVHEGGIATGTVINEKGWQAIKS  179
            Q V++GG+ SDTVI  GGGQSL+G AVNTTL+  GEQWVH GG A+GT+IN+ G Q+IK 
Sbjct  123  QIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTIKH  182

Query  180  GAVATDTVVNTGAEGGPDAENGDTGQTVYGDAVRTTINKNGRQIVAAEGTANTTVVYAGG  239
            G++AT+T+VNTGAEGGP++EN  +GQ V G A  TTINKNGRQ++ + G A  T++YAGG
Sbjct  183  GGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAGG  242

Query  240  DQTVHGHALDTTLNGGYQYVHNGGTASGTVVNSDGWQIIKEGGLADFTTVNQKGKLQVNA  299
            DQTVHG+A +T L+GG QYVHNGGTA+ T++N DGWQ+IKEGG A  TT+NQKGKLQVNA
Sbjct  243  DQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQVNA  302

Query  300  GGTATNVTLKQGGALVSSTAATVLGSNRLGNFTVENGKADGVVLESGGRLDVLEGHSAWK  359
            GG A++VT + GGALV+STAATV G+NRLG F+V +GKAD VVLE+GGRLDVL GH+A +
Sbjct  303  GGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN  362

Query  360  TLVDDGGTLAVSAGGKATGVTMTSGGALIADSGATVEGTNASGK-FSIDGISGQASGLLL  418
            T VDDGGTL V  GG AT V+M +GG L+ADSGA+V GT + GK FSI+G  GQA +L+L
Sbjct  363  TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGG--GQADALML  420

Query  419  ENGGSFTVNAGGQASNTTVGHRGTLMLAAGGSLSGRTQLSKGASMVLNGNVVSTGDI  475
            E+G+SFT+NAG+ A++TTV   G L  A GG+L+G T L++GA + L+G+ V+ + +
Sbjct  421  EKGSSFTLNAGDTATDTTV--NGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTL  475

63) ECO55CA74_17450 in NC_017656


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score =  675 bits (2554),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 479/814 (59%), Positives = 599/814 (74%), Gaps = 60/814 (7%)

Query  148   NTTLNGGEQWVHEGGIATGTVINEKGWQAIKSGAVATDTVVNTGAEGGPDAENGDTGQTV  207
             NT L+GG+Q VH+GG AT T+IN  GWQ IK G                           
Sbjct  252   NTRLEGGNQYVHNGGTATETLINRDGWQVIKEG---------------------------  284

Query  208   YGDAVRTTINKNGRQIVAAEGTANTTVVYAGGDQTVHGHALDTTLN--GGYQYVHNGGTA  265
              G A +TTIN++G+  V A G A+     +GG       A  T  N  G++  V+  G A
Sbjct  285   -GTAAHTTINQKGKLQVNAGGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVE--GKA  341

Query  266   SGTVVNSDGWQIIKEGGLADFTTVNQKGKLQVNAGGTATNVTLKQGGALVSSTAATVLGS  325
                V++++G+  +  G  A  T V++ G L+V  GGTAT V++ +GG L++ ++A+V G+
Sbjct  342   DNVVLENGGRLDVLTGHTATNTRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGT  401

Query  326   NRLGN-FTVENGKADGVVLESGGRLDVLEGHSAWKTLVDDGGTLAVSAGGKATGVTMTSG  384
                G+ F++  G+AD+++LE G+ + +  G++A  T V++G  L  + GG  +G T  + 
Sbjct  402   RSDGKAFSIGGGQADALMLEKGSSFTLNAGDTATDTTVNGG--LFTARGGTLAGTTTLNN  459

Query  385   GALIADSGATVEGTNASGK-----FSIDGISGQASGLLLENGGSFTVNAGGQASNTTVGH  439
             GA+++ SG TV+    + +     +  ++++G++S +    +G++TV+    + ++   +
Sbjct  460   GAILTLSGKTVNNDTLTIREGDALLQGGALTGNGS-VEKSGSGTLTVSNTTLTQKAVNLN  518

Query  440   RGTLMLAAGGSLSGRTQLSKGASMVLNGNVVSTGDIVNAGEIYFDNQTT---PDAVLSRA  496
              GTL L  + +++      +G+++ L G+ V  G I ++ ++ + + +T   PD    ++
Sbjct  519   EGTLTLNDS-TVTTDVIAQRGTALKLTGSTVLNGAI-DPTNVTLASGATWNIPDNATVQS  576

Query  497   VAKG---NAPVTFH----------KLTTSNLTGQGGTINMRVRLD-GSNTSDQLVINGGQ  542
             V  +    + + F            L   NL GQ GTI++RVR D + N +D+LVI+GG+
Sbjct  577   VVDDLSHAGQIHFTSTRTGKFVPATLKVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGR  636

Query  543   ATGKTWLAFTNVGNSNLGVATSGQGIRVVDAQNGATTEEGAFALSRPLQAGAFNYTLNRD  602
             ATGKT L + N GNS  G+ATSG+GI+VV+A NGATTEEGAF  +  LQAGAFNY+LNRD
Sbjct  637   ATGKTILNLVNAGNSASGLATSGKGIQVVEAINGATTEEGAFIQGNKLQAGAFNYSLNRD  696

Query  603   SDEDWYLRSENAYRAEVPLYASMLTQAMDYDRILAGSRSHQSGVSGENNSVRLSIQGGHL  662
             SDE WYLRSENAYRAEVPLYASMLTQAMDYDRILAGSRSHQ+GVSGENNSVRLSIQGGHL
Sbjct  697   SDESWYLRSENAYRAEVPLYASMLTQAMDYDRILAGSRSHQTGVSGENNSVRLSIQGGHL  756

Query  663   GHDNNGGIARGATPESNGSYGFVRLEGDLLRTEVAGMSLTTGVYGAAGHSSVDVKDDDGS  722
             GHDNNGGIARGATPES+GSYGFVRLEGDLLRTEVAGMS+T+GVYGAAGHSSVDVKDDDGS
Sbjct  757   GHDNNGGIARGATPESSGSYGFVRLEGDLLRTEVAGMSVTAGVYGAAGHSSVDVKDDDGS  816

Query  723   RAGTVRDDAGSLGGYLNLTHTSSGLWADIVAQGTRHSMKASSDNNDFRARGWGWLGSLET  782
             RAGTVRDDAGSLGGYLNL H +SGLWADIVAQGTRHSMKASSDNNDFR RGWGWLGSLET
Sbjct  817   RAGTVRDDAGSLGGYLNLIHNASGLWADIVAQGTRHSMKASSDNNDFRVRGWGWLGSLET  876

Query  783   GLPFSITDNLMLEPQLQYTWQGLSLDDGQDNAGYVKFGHGSTQHVRAGFRLGSHNDMTFG  842
             GLPFSITDNLMLEPQLQYTWQGLSLDDGQDNA+YVKFGHGS+QHVRAGFRLGSH+DM FG
Sbjct  877   GLPFSITDNLMLEPQLQYTWQGLSLDDGQDNASYVKFGHGSAQHVRAGFRLGSHHDMNFG  936

Query  843   EGTSSRDTLRDSTKHGVSELPVNWWVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSRNGT  902
              GTSSRDTLR+S+KH+V ELPVNWWVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPS+NGT
Sbjct  937   KGTSSRDTLRGSAKHSVRELPVNWWVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGT  996

Query  903   SLDLQAGLEARVRENITLGVQAGYAHSVSGSSAE  936
             SLDLQAGLEARVRENITLGVQA+YAHS++GSSAE
Sbjct  997   SLDLQAGLEARVRENITLGVQASYAHSINGSSAE  1030


 Score =  400 bits (1505),  Expect = 2e-112, Method: Compositional matrix adjust.
 Identities = 315/477 (67%), Positives = 396/477 (84%), Gaps = 6/477 (1%)

Query  1    MKRHLNTSYRLVWNHITGTLVVASELARSRGKRagvavalslaavtsvpalaaDTVVQAG  60
            MKRHLNT YRLVWNHITG++VVASELAR++GKR+GVAVALSLAAVTS+P LAAD VV++G
Sbjct  3    MKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVHPG  62

Query  61   ETVSGGTLVNHDNQIVFGTANGMTISTGLEYGPDNEANTGGQWIQnggtannttvtgggL  120
            ETV+GGTLVNHDNQ+V GTA+G+T+STGLE GPD++ NTGGQWI+ GGT+ NTTVT+ G 
Sbjct  63   ETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTANGR  122

Query  121  QRVNTGGSVSDTVIsagggqslqgqaVNTTLNG-GEQWVHEGGIATGTVINEKGWQAIKS  179
            Q V++GG+ SDTVI  GGGQSL+G AVNTTL+  GEQWVH GG A+GT+IN+ G Q+IK 
Sbjct  123  QIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTIKH  182

Query  180  GAVATDTVVNTGAEGGPDAENGDTGQTVYGDAVRTTINKNGRQIVAAEGTANTTVVYAGG  239
            G++AT+T+VNTGAEGGP++EN  +GQ V G A  TTINKNGRQ++ + G A  T++YAGG
Sbjct  183  GGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAGG  242

Query  240  DQTVHGHALDTTLNGGYQYVHNGGTASGTVVNSDGWQIIKEGGLADFTTVNQKGKLQVNA  299
            DQTVHG+A +T L+GG QYVHNGGTA+ T++N DGWQ+IKEGG A  TT+NQKGKLQVNA
Sbjct  243  DQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIKEGGTAAHTTINQKGKLQVNA  302

Query  300  GGTATNVTLKQGGALVSSTAATVLGSNRLGNFTVENGKADGVVLESGGRLDVLEGHSAWK  359
            GG A++VT + GGALV+STAATV G+NRLG F+V +GKAD VVLE+GGRLDVL GH+A +
Sbjct  303  GGKASDVTQNTGGALVTSTAATVTGTNRLGAFSVVEGKADNVVLENGGRLDVLTGHTATN  362

Query  360  TLVDDGGTLAVSAGGKATGVTMTSGGALIADSGATVEGTNASGK-FSIDGISGQASGLLL  418
            T VDDGGTL V  GG AT V+M +GG L+ADSGA+V GT + GK FSI+G  GQA +L+L
Sbjct  363  TRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGG--GQADALML  420

Query  419  ENGGSFTVNAGGQASNTTVGHRGTLMLAAGGSLSGRTQLSKGASMVLNGNVVSTGDI  475
            E+G+SFT+NAG+ A++TTV   G L  A GG+L+G T L++GA + L+G+ V+ + +
Sbjct  421  EKGSSFTLNAGDTATDTTV--NGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTL  475

64) CFSAN002050_05940 in NC_021818


> NC_004337_P1|28|G24|24114255|NP_708765.1|Shigella_flexneri_2a_str._301|+|35007..38135|-|SF2991|outer 
membrane fluffing protein
Length=1042

 Score =  649 bits (2452),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 509/1073 (48%), Positives = 743/1073 (70%), Gaps = 70/1073 (6%)

Query  1     MKRGLNTSYRLVWNTVQGAFVVVSELAKANGKRasavlvaaglvvsPIVMAEETTSVPFG  60
             MKR LNT YRLVWN + GAFVV SELA+A+GKR++  +  +   V+++ +      V  G
Sbjct  3     MKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSLAAVTSLPVLAADIVVHPG  62

Query  61    EVVNGAVIDNHDTQRVSGETNDTVINTGL--GPdsegngggqgvedggvsnRTTINDGGL  118
             E VNG+ + NHD Q VSG +++  ++TGL  GPDS+ N GGQ +  GG +  TT+   G 
Sbjct  63    ETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTANGR  122

Query  119   QWVDAGGLATDTTVNSGGGQSVAGQTKGTVLNG-GEQYVHSGGVADGTVINTGGYQTVKA  177
             Q V+AGG A+DT +  GGGQS+ G +  T L+  GEQ VH+GG A GT+IN +GYQT+K 
Sbjct  123   QIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQWVHGGGKAAGTIINQDGYQTIKH  182

Query  178   GGTAANTVVNTGSEGGPDSENDDAGQWVYGTAQNTTINANGRQVVQEGGVSTDTVINSGG  237
             GG A+ T+VNTG+EGGP+SEN  +GQ V GTA++TTIN NGRQV+  +G++ DT+I +GG
Sbjct  183   GGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTTINKNGRQVIWSSGMARDTLIYAGG  242

Query  238   DQSVHGNAENTQLDGGYQYVHSGGVADGTVINEGGYQTVKaggtatntvvntgSEGGPDA  297
             DQ+VHG+A+NT+L+GG QYVH+GG A  T+IN +G Q +K              EG    
Sbjct  243   DQTVHGEAHNTRLEGGNQYVHNGGTATETLINRDGWQVIK--------------EG----  284

Query  298   ENSDGQWVYGTAENTTINANGRQVINEGGVATTTTIYSGGDQSVHGYAEDTVLD--GGYQ  355
                      GTA +TTIN +G+  +N GG A+  T  +GG       A  T  +  G++ 
Sbjct  285   ---------GTAAHTTINQKGKLQVNAGGKASDVTQNTGGALVTSTAATVTGTNRLGAFS  335

Query  356   YVHSGGMAVNTTINSSGWQVVKEGAQARDTTVNSNGILQVNADGVASDVTINAGGALVTN  415
              V+  G A N  ++++G+  V  G  A +T V+  G L+V  +G A+ V++  GG L+++
Sbjct  336   VVE--GKADNVVLENGGRLDVLTGHTATNTRVDDGGTLDVRNGGTATTVSMGNGGVLLAD  393

Query  416   TDADVSGTNRLG-GFSVDSVTGSASNVVLENGGQLNVFTGDSASATTV------------  462
             ++A VSGT   G +FS+++  G A  ++LE+G+ + + +GD+A+ TTV            
Sbjct  394   SGAAVSGTRSDGKAFSIGG--GQADALMLEKGSSFTLNAGDTATDTTVNGGLFTARGGTL  451

Query  463   ------DNGGTLSVAAGGTATDT-TIYAGGALIADTRSTVSGT---NAQGEFSIDGATGQ  512
                   +NG+ L++++     DT TI  G+AL+ +   T +G+   ++ G +++  +T  
Sbjct  452   AGTTTLNNGAILTLSGKTVNNDTLTIREGDALLQGGALTGNGSVEKSGSGTLTVSNTTLT  511

Query  513   ASSLYLENGGYFSVRSGGNAADTRVGSGGELNVEDGGTLSGT-----TRLTEDATLTLTG  567
               ++ L++G  +++  +  ++D     G  L++ ++  L+G+       L+ +AT  + +
Sbjct  512   QKAVNLNEGT-LTLNDSTVTTDVIAQRGTALKLTGSTVLNGAIDPTNVTLASGATWNIPD  570

Query  568   DAVSTGTIDS---AGTITFAQADDTGFTPHTLTTTSLVGNGGTINMSVNLNDPAFPTDML  624
             +A   + +D    AG I F+ +    F P TL   +L G+ GTI++ V  + +   +D L
Sbjct  571   NATVQSVVDDLSHAGQIHFTSTRTGKFVPATLKVKNLNGQNGTISLRVRPDMAQNNADRL  630

Query  625   IIDGGQAtgttnlnitntgSVGLGLATTGEGIKVVDAVNGATTDDNAFALSQPLQAGAYN  684
             +IDGG+ATG T LN+ N+G+ + GLAT+G GI+VV+A+NGATT++ AF  ++ LQAGA+N
Sbjct  631   VIDGGRATGKTILNLVNAGNSASGLATSGKGIQVVEAINGATTEEGAFIQGNKLQAGAFN  690

Query  685   YTLDHGTTDEDWYLSSEADYRAEAALYSSMLTQSMDYDRLLAGSYNQRRAAQG-GQGVWA  743
             Y+L+++ +DE WYL SE  YRAE +LY+SMLTQ+MDYDR+LAGS +++ +  G  ++V+ 
Sbjct  691   YSLNRD-SDESWYLRSENAYRAEVPLYASMLTQAMDYDRILAGSRSHQTGVSGENNSVRL  749

Query  744   RIQgghighddnggiaggdTPESSGSYGFIQTGADLLRSDAGPVSLTTGIYGAAGLSSVD  803
              IQGGH+GHD+NGGIA G TPESSGSYGF++  +DLLR++ + +S+T+G+YGAAG SSVD
Sbjct  750   SIQGGHLGHDNNGGIARGATPESSGSYGFVRLEGDLLRTEVAGMSVTAGVYGAAGHSSVD  809

Query  804   VKNDDHSDAGDVRDNVYSLGGYLTMVHNASGGWVDMVAQGSRHYLEATSDNNDFNTHGWG  863
             VK+DD S AG VRD+  SLGGYL ++HNASG W D+VAQG+RH + A+SDNNDF  +GWG
Sbjct  810   VKDDDGSRAGTVRDDAGSLGGYLNLIHNASGLWADIVAQGTRHSMKASSDNNDFRVRGWG  869

Query  864   WLGSLETGLPLSVGHGLVLEPQIQYIWQGLSLEDGHDNGGYVNFGDGSAQHLRAGLRFGN  923
             WLGSLETGLP+S+ + L+LEPQ+QY WQGLSL+DG+DN++YV+FG+GSAQH+RAG+R+G+
Sbjct  870   WLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDDGQDNASYVKFGHGSAQHVRAGFRLGS  929

Query  924   MSEMAFGRGSSSQAGFGDSMKHRVSELPVNWWVRPSVIRTFSSDGDMSMGTDTAGSNVIF  983
               +M FG+G+SS+  + +S KH V ELPVNWWV+PSVIRTFSS GDMSMGT +AGSN+ F
Sbjct  930   HHDMNFGKGTSSRDTLRGSAKHSVRELPVNWWVQPSVIRTFSSRGDMSMGTAAAGSNMTF  989

Query  984   SPSQDGTSLDLQVGVETLVRQNVSLGVQGGYTRSVSGESADGYNGQATLKVTF  1036
             SPSQ+GTSLDLQ G+E+ VR+N++LGVQ++Y++S++G SA+GYN+QATL+VTF
Sbjct  990   SPSQNGTSLDLQAGLEARVRENITLGVQASYAHSINGSSAEGYNSQATLNVTF  1042