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PAthogenisity Island DataBase (PAI DB)

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Homologs of ORF_28 gene of DQ095216

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) ECS88_3283
( YP_002392898.1 )

hypothetical protein

NC_011742
(Escherichia coli S88)

5e-46

100

2) O3M_04365
( YP_006768552.1 )

hypothetical protein

NC_018650
(Escherichia coli 2009EL-2050)

2e-43

3) O3O_21325
( YP_006782659.1 )

hypothetical protein

NC_018661
(Escherichia coli 2009EL-2071)

2e-43

4) O3K_04325
( YP_006777595.1 )

hypothetical protein

NC_018658
(Escherichia coli 2011C-3493)

2e-43

5) EC55989_3309
( YP_002404276.1 )

hypothetical protein

NC_011748
(Escherichia coli 55989)

2e-43

6) APECO1_3506
( YP_854270.1 )

hypothetical protein

NC_008563
(Escherichia coli APEC O1)

1e-42

100

7) EC042_3179A
( YP_006097472.1 )

hypothetical protein

NC_017626
(Escherichia coli 042)

1e-41

• Sequence Alignments

1) ECS88_3283 in NC_011742


> DQ095216|28|G28|70608366|AAZ04438.1|Escherichia_coli_APEC_O1|-|30937..31260|-|ORF_28|hypothetical 
protein
Length=107

 Score =  176 bits (653),  Expect = 5e-46, Method: Compositional matrix adjust.
 Identities = 107/107 (100%), Positives = 107/107 (100%), Gaps = 0/107 (0%)

Query  1    MSNRYWMISFHKNTRNLTVRSVPKKDIAHNIKLIIRPLNISIEKFLSIEYTNVEGIPLTS  60
            MSNRYWMISFHKNTRNLTVRSVPKKDIAHNIKLIIRPLNISIEKFLSIEYTNVEGIPLTS
Sbjct  1    MSNRYWMISFHKNTRNLTVRSVPKKDIAHNIKLIIRPLNISIEKFLSIEYTNVEGIPLTS  60

Query  61   RRITIMGLKPGPKPIAKSVGKPDQRRRDNKDTPGNTPGLKPSKSTGK  107
            RRITIMGLKPGPKPIAKSVGKPDQRRRDNKDTPGNTPGLKPSKSTGK
Sbjct  61   RRITIMGLKPGPKPIAKSVGKPDQRRRDNKDTPGNTPGLKPSKSTGK  107

2) EC55989_3309 in NC_011748


> DQ095216|28|G28|70608366|AAZ04438.1|Escherichia_coli_APEC_O1|-|30937..31260|-|ORF_28|hypothetical 
protein
Length=107

 Score =  168 bits (621),  Expect = 2e-43, Method: Compositional matrix adjust.
 Identities = 102/107 (96%), Positives = 104/107 (98%), Gaps = 0/107 (0%)

Query  1    MSNRYWMISFHKNTRNLTVRSVPKKDIAHNIELIIRPLNIPIEKFLSIEYTNVEGIPLTS  60
            MSNRYWMISFHKNTRNLTVRSVPKKDIAHNI LIIRPLNI+IEKFLSIEYTNVEGIPLTS
Sbjct  1    MSNRYWMISFHKNTRNLTVRSVPKKDIAHNIKLIIRPLNISIEKFLSIEYTNVEGIPLTS  60

Query  61   RRITIMGLKLGPKPIAKSTGKPDQRRRDNKDTPGNTSGLKPSKSTGK  107
            RRITIMGLK GPKPIAKS GKPDQRRRDNKDTPGNT+GLKPSKSTGK
Sbjct  61   RRITIMGLKPGPKPIAKSVGKPDQRRRDNKDTPGNTPGLKPSKSTGK  107

3) O3M_04365 in NC_018650


> DQ095216|28|G28|70608366|AAZ04438.1|Escherichia_coli_APEC_O1|-|30937..31260|-|ORF_28|hypothetical 
protein
Length=107

 Score =  168 bits (621),  Expect = 2e-43, Method: Compositional matrix adjust.
 Identities = 102/107 (96%), Positives = 104/107 (98%), Gaps = 0/107 (0%)

Query  1    MSNRYWMISFHKNTRNLTVRSVPKKDIAHNIELIIRPLNIPIEKFLSIEYTNVEGIPLTS  60
            MSNRYWMISFHKNTRNLTVRSVPKKDIAHNI LIIRPLNI+IEKFLSIEYTNVEGIPLTS
Sbjct  1    MSNRYWMISFHKNTRNLTVRSVPKKDIAHNIKLIIRPLNISIEKFLSIEYTNVEGIPLTS  60

Query  61   RRITIMGLKLGPKPIAKSTGKPDQRRRDNKDTPGNTSGLKPSKSTGK  107
            RRITIMGLK GPKPIAKS GKPDQRRRDNKDTPGNT+GLKPSKSTGK
Sbjct  61   RRITIMGLKPGPKPIAKSVGKPDQRRRDNKDTPGNTPGLKPSKSTGK  107

4) O3O_21325 in NC_018661


> DQ095216|28|G28|70608366|AAZ04438.1|Escherichia_coli_APEC_O1|-|30937..31260|-|ORF_28|hypothetical 
protein
Length=107

 Score =  168 bits (621),  Expect = 2e-43, Method: Compositional matrix adjust.
 Identities = 102/107 (96%), Positives = 104/107 (98%), Gaps = 0/107 (0%)

Query  1    MSNRYWMISFHKNTRNLTVRSVPKKDIAHNIELIIRPLNIPIEKFLSIEYTNVEGIPLTS  60
            MSNRYWMISFHKNTRNLTVRSVPKKDIAHNI LIIRPLNI+IEKFLSIEYTNVEGIPLTS
Sbjct  1    MSNRYWMISFHKNTRNLTVRSVPKKDIAHNIKLIIRPLNISIEKFLSIEYTNVEGIPLTS  60

Query  61   RRITIMGLKLGPKPIAKSTGKPDQRRRDNKDTPGNTSGLKPSKSTGK  107
            RRITIMGLK GPKPIAKS GKPDQRRRDNKDTPGNT+GLKPSKSTGK
Sbjct  61   RRITIMGLKPGPKPIAKSVGKPDQRRRDNKDTPGNTPGLKPSKSTGK  107

5) O3K_04325 in NC_018658


> DQ095216|28|G28|70608366|AAZ04438.1|Escherichia_coli_APEC_O1|-|30937..31260|-|ORF_28|hypothetical 
protein
Length=107

 Score =  168 bits (621),  Expect = 2e-43, Method: Compositional matrix adjust.
 Identities = 102/107 (96%), Positives = 104/107 (98%), Gaps = 0/107 (0%)

Query  1    MSNRYWMISFHKNTRNLTVRSVPKKDIAHNIELIIRPLNIPIEKFLSIEYTNVEGIPLTS  60
            MSNRYWMISFHKNTRNLTVRSVPKKDIAHNI LIIRPLNI+IEKFLSIEYTNVEGIPLTS
Sbjct  1    MSNRYWMISFHKNTRNLTVRSVPKKDIAHNIKLIIRPLNISIEKFLSIEYTNVEGIPLTS  60

Query  61   RRITIMGLKLGPKPIAKSTGKPDQRRRDNKDTPGNTSGLKPSKSTGK  107
            RRITIMGLK GPKPIAKS GKPDQRRRDNKDTPGNT+GLKPSKSTGK
Sbjct  61   RRITIMGLKPGPKPIAKSVGKPDQRRRDNKDTPGNTPGLKPSKSTGK  107

6) APECO1_3506 in NC_008563


> DQ095216|28|G28|70608366|AAZ04438.1|Escherichia_coli_APEC_O1|-|30937..31260|-|ORF_28|hypothetical 
protein
Length=107

 Score =  166 bits (612),  Expect = 1e-42, Method: Compositional matrix adjust.
 Identities = 101/101 (100%), Positives = 101/101 (100%), Gaps = 0/101 (0%)

Query  1    MISFHKNTRNLTVRSVPKKDIAHNIKLIIRPLNISIEKFLSIEYTNVEGIPLTSRRITIM  60
            MISFHKNTRNLTVRSVPKKDIAHNIKLIIRPLNISIEKFLSIEYTNVEGIPLTSRRITIM
Sbjct  7    MISFHKNTRNLTVRSVPKKDIAHNIKLIIRPLNISIEKFLSIEYTNVEGIPLTSRRITIM  66

Query  61   GLKPGPKPIAKSVGKPDQRRRDNKDTPGNTPGLKPSKSTGK  101
            GLKPGPKPIAKSVGKPDQRRRDNKDTPGNTPGLKPSKSTGK
Sbjct  67   GLKPGPKPIAKSVGKPDQRRRDNKDTPGNTPGLKPSKSTGK  107

7) EC042_3179A in NC_017626


> DQ095216|28|G28|70608366|AAZ04438.1|Escherichia_coli_APEC_O1|-|30937..31260|-|ORF_28|hypothetical 
protein
Length=107

 Score =  162 bits (597),  Expect = 1e-41, Method: Compositional matrix adjust.
 Identities = 98/101 (98%), Positives = 99/101 (99%), Gaps = 0/101 (0%)

Query  1    MISFHKNTRNLTVRSVPKKDIAHNIELIIRPLNIPIEKFLSIEYTNVEGIPLTSRRITIM  60
            MISFHKNTRNLTVRSVPKKDIAHNI LIIRPLNI+IEKFLSIEYTNVEGIPLTSRRITIM
Sbjct  7    MISFHKNTRNLTVRSVPKKDIAHNIKLIIRPLNISIEKFLSIEYTNVEGIPLTSRRITIM  66

Query  61   GLKPGPKPIAKSTGKPDQRRRDNKDTPGNTPGLKPSKSTGK  101
            GLKPGPKPIAKS GKPDQRRRDNKDTPGNTPGLKPSKSTGK
Sbjct  67   GLKPGPKPIAKSVGKPDQRRRDNKDTPGNTPGLKPSKSTGK  107