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PAthogenisity Island DataBase (PAI DB)

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Homologs of acfD gene of AF325734

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) Fbal_1310
( YP_003912589.1 )

hypothetical protein

NC_014541
(Ferrimonas balearica DSM 9799)

0.0

2) Shal_3494
( YP_001675698.1 )

hypothetical protein

NC_010334
(Shewanella halifaxensis HAW-EB4)

0.0

3) LY180_15365
( YP_008566137.1 )

Accessory colonization factor AcfD

NC_022364
(Escherichia coli LY180)

0.0

4) EKO11_0748
( YP_005276462.1 )

putative lipoprotein AcfD precursor

NC_016902
(Escherichia coli KO11FL)

0.0

5) yghJ
( YP_006163902.1 )

inner membrane lipoprotein

NC_017660
(Escherichia coli KO11FL)

0.0

6) yghJ
( YP_006125855.1 )

accessory colonization factor

NC_017635
(Escherichia coli W)

0.0

7) yghJ
( YP_006174599.1 )

inner membrane lipoprotein

NC_017664
(Escherichia coli W)

0.0

8) yghJ
( YP_003236130.1 )

lipoprotein AcfD-like protein

NC_013364
(Escherichia coli 11128)

0.0

9) ECO55CA74_17575
( YP_006160631.1 )

lipoprotein acfD-like protein precursor

NC_017656
(Escherichia coli RM12579)

0.0

10) UMNK88_3721
( YP_006135420.1 )

accessory colonization factor protein AcfD

NC_017641
(Escherichia coli UMNK88)

0.0

11) yghJ
( YP_003501165.1 )

lipoprotein acfD-like protein precursor

NC_013941
(Escherichia coli CB9615)

0.0

12) ECSE_3249
( YP_002294524.1 )

hypothetical protein

NC_011415
(Escherichia coli SE11)

0.0

13) NRG857_14720
( YP_006121288.1 )

inner membrane lipoprotein

NC_017634
(Escherichia coli NRG 857C)

0.0

14) yghJ
( YP_002557823.1 )

lipoprotein acfD homolog

NC_011993
(Escherichia coli LF82)

0.0

15) yghJ
( YP_006130273.1 )

putative inner membrane lipoprotein

NC_017638
(Escherichia coli DH1)

0.0

16) EcDH1_0723
( YP_006090696.1 )

hypothetical protein

NC_017625
(Escherichia coli DH1)

0.0

17) ECBD_0765
( YP_003035019.1 )

lipoprotein AcfD-like protein

NC_012947
(Escherichia coli Escherichia coli BL21-Gold(DE3)pLysS AG)

0.0

18) yghJ
( YP_002927888.1 )

putative inner membrane lipoprotein

NC_012759
(Escherichia coli K-12)

0.0

19) yghJ
( YP_491170.1 )

inner membrane lipoprotein

NC_007779
(Escherichia coli K-12)

0.0

20) yghJ
( YP_026189.1 )

predicted inner membrane lipoprotein

NC_000913
(Escherichia coli K12)

0.0

21) yghJ
( YP_006170072.1 )

Putative lipoprotein acfD-like protein precursor

NC_017663
(Escherichia coli P12b)

0.0

22) yghJ
( YP_002414113.1 )

inner membrane lipoprotein

NC_011751
(Escherichia coli UMN026)

0.0

23) EcE24377A_3432
( YP_001464429.1 )

hypothetical protein

NC_009801
(Escherichia coli E24377A)

0.0

24) yghJ
( YP_854419.1 )

lipoprotein AcfD-like

NC_008563
(Escherichia coli APEC O1)

0.0

25) ECOK1_3385
( YP_006102500.1 )

putative lipoprotein

NC_017628
(Escherichia coli IHE3034)

0.0

26) ECOPMV1_03270
( YP_008573044.1 )

Procyclic acidic repetitive protein (PARP)

NC_022370
(Escherichia coli PMV-1)

0.0

27) yghJ
( YP_002392955.1 )

inner membrane lipoprotein

NC_011742
(Escherichia coli S88)

0.0

28) UM146_01530
( YP_006109247.1 )

putative lipoprotein AcfD-like precursor

NC_017632
(Escherichia coli UM146)

0.0

29) yghJ
( YP_542367.1 )

lipoprotein AcfD-like

NC_007946
(Escherichia coli UTI89)

0.0

30) yghJ
( YP_002399471.1 )

inner membrane lipoprotein

NC_011745
(Escherichia coli ED1a)

0.0

31) acfD
( YP_006097548.1 )

accessory colonization factor

NC_017626
(Escherichia coli 042)

0.0

32) O3M_04130
( YP_006768505.1 )

inner membrane lipoprotein

NC_018650
(Escherichia coli 2009EL-2050)

0.0

33) O3O_21560
( YP_006782612.1 )

inner membrane lipoprotein

NC_018661
(Escherichia coli 2009EL-2071)

0.0

34) O3K_04095
( YP_006777549.1 )

inner membrane lipoprotein

NC_018658
(Escherichia coli 2011C-3493)

0.0

35) EcSMS35_3251
( YP_001745231.1 )

hypothetical protein

NC_010498
(Escherichia coli SMS-3-5)

0.0

36) yghJ
( YP_002404344.1 )

inner membrane lipoprotein

NC_011748
(Escherichia coli 55989)

0.0

37) yghJ
( YP_003000555.1 )

yghJ

NC_012892
(Escherichia coli BL21(DE3))

0.0

38) yghJ
( YP_003055417.1 )

inner membrane lipoprotein

NC_012971
(Escherichia coli BL21(DE3))

0.0

39) yghJ
( YP_003046028.1 )

putative inner membrane lipoprotein

NC_012967
(Escherichia coli REL606)

0.0

40) EcHS_A3142
( YP_001459760.1 )

hypothetical protein

NC_009800
(Escherichia coli HS)

0.0

41) yghJ
( YP_002388453.1 )

inner membrane lipoprotein

NC_011741
(Escherichia coli IAI1)

0.0

42) ETEC_3241
( YP_006116782.1 )

accessory colonization factor

NC_017633
(Escherichia coli ETEC H10407)

0.0

43) yghJ
( YP_006145506.1 )

putative inner membrane lipoprotein

NC_017646
(Escherichia coli CE10)

0.0

44) yghJ
( YP_002409370.1 )

inner membrane lipoprotein

NC_011750
(Escherichia coli IAI39)

0.0

45) yghJ
( YP_006107365.1 )

putative lipoprotein AcfD-like precursor

NC_017631
(Escherichia coli ABU 83972)

0.0

46) yghJ
( YP_006155471.1 )

putative lipoprotein AcfD-like precursor

NC_017652
(Escherichia coli clone D i14)

0.0

47) yghJ
( YP_006150552.1 )

putative lipoprotein AcfD-like precursor

NC_017651
(Escherichia coli clone D i2)

0.0

48) ECNA114_3049
( YP_006140162.1 )

hypothetical protein

NC_017644
(Escherichia coli NA114)

0.0

49) yghJ
( YP_002330723.1 )

inner membrane lipoprotein

NC_011601
(Escherichia coli E2348/69)

0.0

50) yghJ
( YP_002384010.1 )

inner membrane lipoprotein

NC_011740
(Escherichia fergusonii ATCC 35469)

0.0

51) ECSF_2797
( YP_003350787.1 )

hypothetical protein

NC_013654
(Escherichia coli SE15)

0.0

52) ECP_3050
( YP_670934.1 )

lipoprotein AcfD

NC_008253
(Escherichia coli 536)

0.0

• Sequence Alignments

1) O3Y_03935 in NC_016944


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 2385 bits (9065),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1520/1520 (100%), Positives = 1520/1520 (100%), Gaps = 0/1520 (0%)

Query  1     MKIRIVSLIVLGFLIGCKHESIITPTVPADGSGGNALNPGLVGGYLPDIGVPDPIISLSM  60
             MKIRIVSLIVLGFLIGCKHESIITPTVPADGSGGNALNPGLVGGYLPDIGVPDPIISLSM
Sbjct  1     MKIRIVSLIVLGFLIGCKHESIITPTVPADGSGGNALNPGLVGGYLPDIGVPDPIISLSM  60

Query  61    TLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEVL  120
             TLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEVL
Sbjct  61    TLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEVL  120

Query  121   SLISADEYRDSPVRQENLQILMKNMATIHGDKISLVFRSTLDALTFENYLRHNLDLPKDQ  180
             SLISADEYRDSPVRQENLQILMKNMATIHGDKISLVFRSTLDALTFENYLRHNLDLPKDQ
Sbjct  121   SLISADEYRDSPVRQENLQILMKNMATIHGDKISLVFRSTLDALTFENYLRHNLDLPKDQ  180

Query  181   FLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTDVIP  240
             FLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTDVIP
Sbjct  181   FLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTDVIP  240

Query  241   SLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFELGS  300
             SLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFELGS
Sbjct  241   SLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFELGS  300

Query  301   TRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKLIIPDKVTQIFSLYPNVINEVISL  360
             TRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKLIIPDKVTQIFSLYPNVINEVISL
Sbjct  301   TRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKLIIPDKVTQIFSLYPNVINEVISL  360

Query  361   SLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKKKsaids  420
             SLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKKKSAIDS
Sbjct  361   SLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKKKSAIDS  420

Query  421   essqiqdiiNKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIANSAFP  480
             ESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIANSAFP
Sbjct  421   ESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIANSAFP  480

Query  481   VLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGEIGKG  540
             VLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGEIGKG
Sbjct  481   VLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGEIGKG  540

Query  541   KLMVLGNARYNSVLVCPNGFSWGGTVKNGTCSLSSDRDDMANFFSNVIRYLTGSTSNDVI  600
             KLMVLGNARYNSVLVCPNGFSWGGTVKNGTCSLSSDRDDMANFFSNVIRYLTGSTSNDVI
Sbjct  541   KLMVLGNARYNSVLVCPNGFSWGGTVKNGTCSLSSDRDDMANFFSNVIRYLTGSTSNDVI  600

Query  601   VGTNIPEVYFKSSGQTMGSKANFELDSRFSKQTQQLTSFHDLDVNTIPLIIINAYDYKGK  660
             VGTNIPEVYFKSSGQTMGSKANFELDSRFSKQTQQLTSFHDLDVNTIPLIIINAYDYKGK
Sbjct  601   VGTNIPEVYFKSSGQTMGSKANFELDSRFSKQTQQLTSFHDLDVNTIPLIIINAYDYKGK  660

Query  661   NINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIINTNNSEISRLLDSAGI  720
             NINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIINTNNSEISRLLDSAGI
Sbjct  661   NINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIINTNNSEISRLLDSAGI  720

Query  721   AFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVEDESSGQQTLPYVINSDGSI  780
             AFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVEDESSGQQTLPYVINSDGSI
Sbjct  721   AFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVEDESSGQQTLPYVINSDGSI  780

Query  781   EWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDESQHWKKDISGKIIYNVAGKPE  840
             EWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDESQHWKKDISGKIIYNVAGKPE
Sbjct  781   EWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDESQHWKKDISGKIIYNVAGKPE  840

Query  841   VDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINCLEYRPGNSIPITGGLYVPRY  900
             VDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINCLEYRPGNSIPITGGLYVPRY
Sbjct  841   VDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINCLEYRPGNSIPITGGLYVPRY  900

Query  901   TDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSGARLNSVDLNRIYQNMSVWLW  960
             TDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSGARLNSVDLNRIYQNMSVWLW
Sbjct  901   TDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSGARLNSVDLNRIYQNMSVWLW  960

Query  961   NDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPEELKDELTQLGMIYDEKSGSY  1020
             NDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPEELKDELTQLGMIYDEKSGSY
Sbjct  961   NDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPEELKDELTQLGMIYDEKSGSY  1020

Query  1021  AGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPGEVTTRSGGGDITLDMRNNTA  1080
             AGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPGEVTTRSGGGDITLDMRNNTA
Sbjct  1021  AGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPGEVTTRSGGGDITLDMRNNTA  1080

Query  1081  AWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADDLTGREKHELGLKRPPRMSKS  1140
             AWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADDLTGREKHELGLKRPPRMSKS
Sbjct  1081  AWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADDLTGREKHELGLKRPPRMSKS  1140

Query  1141  FVIGGDSPKMQTFTVPYGGLIYAQGGNSQQVKLTFSGTIDAPLYIDGKWRNPLLSGAPIG  1200
             FVIGGDSPKMQTFTVPYGGLIYAQGGNSQQVKLTFSGTIDAPLYIDGKWRNPLLSGAPIG
Sbjct  1141  FVIGGDSPKMQTFTVPYGGLIYAQGGNSQQVKLTFSGTIDAPLYIDGKWRNPLLSGAPIG  1200

Query  1201  EVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADLNDFYARDEGADGDKNRKATDK  1260
             EVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADLNDFYARDEGADGDKNRKATDK
Sbjct  1201  EVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADLNDFYARDEGADGDKNRKATDK  1260

Query  1261  SMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLNTMPLNSWLLWHEVGHNSAEAP  1320
             SMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLNTMPLNSWLLWHEVGHNSAEAP
Sbjct  1261  SMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLNTMPLNSWLLWHEVGHNSAEAP  1320

Query  1321  FNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFDFVNaehghawgaggageRLVMF  1380
             FNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFDFVNAEHGHAWGAGGAGERLVMF
Sbjct  1321  FNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFDFVNAEHGHAWGAGGAGERLVMF  1380

Query  1381  AQLKEWAETEFDINDWYNDKLPGFYIEESGIKGWNLFKLMHRLMRNENDDQINMKGENQC  1440
             AQLKEWAETEFDINDWYNDKLPGFYIEESGIKGWNLFKLMHRLMRNENDDQINMKGENQC
Sbjct  1381  AQLKEWAETEFDINDWYNDKLPGFYIEESGIKGWNLFKLMHRLMRNENDDQINMKGENQC  1440

Query  1441  KISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKAFLYPDDPQPYYEGGITPSGIQRVK  1500
             KISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKAFLYPDDPQPYYEGGITPSGIQRVK
Sbjct  1441  KISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKAFLYPDDPQPYYEGGITPSGIQRVK  1500

Query  1501  SLKLNLPQKNPLSINSVTQH  1520
             SLKLNLPQKNPLSINSVTQH
Sbjct  1501  SLKLNLPQKNPLSINSVTQH  1520

2) VCM66_0802 in NC_012578


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 2385 bits (9065),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1520/1520 (100%), Positives = 1520/1520 (100%), Gaps = 0/1520 (0%)

Query  1     MKIRIVSLIVLGFLIGCKHESIITPTVPADGSGGNALNPGLVGGYLPDIGVPDPIISLSM  60
             MKIRIVSLIVLGFLIGCKHESIITPTVPADGSGGNALNPGLVGGYLPDIGVPDPIISLSM
Sbjct  1     MKIRIVSLIVLGFLIGCKHESIITPTVPADGSGGNALNPGLVGGYLPDIGVPDPIISLSM  60

Query  61    TLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEVL  120
             TLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEVL
Sbjct  61    TLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEVL  120

Query  121   SLISADEYRDSPVRQENLQILMKNMATIHGDKISLVFRSTLDALTFENYLRHNLDLPKDQ  180
             SLISADEYRDSPVRQENLQILMKNMATIHGDKISLVFRSTLDALTFENYLRHNLDLPKDQ
Sbjct  121   SLISADEYRDSPVRQENLQILMKNMATIHGDKISLVFRSTLDALTFENYLRHNLDLPKDQ  180

Query  181   FLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTDVIP  240
             FLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTDVIP
Sbjct  181   FLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTDVIP  240

Query  241   SLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFELGS  300
             SLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFELGS
Sbjct  241   SLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFELGS  300

Query  301   TRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKLIIPDKVTQIFSLYPNVINEVISL  360
             TRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKLIIPDKVTQIFSLYPNVINEVISL
Sbjct  301   TRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKLIIPDKVTQIFSLYPNVINEVISL  360

Query  361   SLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKKKsaids  420
             SLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKKKSAIDS
Sbjct  361   SLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKKKSAIDS  420

Query  421   essqiqdiiNKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIANSAFP  480
             ESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIANSAFP
Sbjct  421   ESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIANSAFP  480

Query  481   VLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGEIGKG  540
             VLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGEIGKG
Sbjct  481   VLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGEIGKG  540

Query  541   KLMVLGNARYNSVLVCPNGFSWGGTVKNGTCSLSSDRDDMANFFSNVIRYLTGSTSNDVI  600
             KLMVLGNARYNSVLVCPNGFSWGGTVKNGTCSLSSDRDDMANFFSNVIRYLTGSTSNDVI
Sbjct  541   KLMVLGNARYNSVLVCPNGFSWGGTVKNGTCSLSSDRDDMANFFSNVIRYLTGSTSNDVI  600

Query  601   VGTNIPEVYFKSSGQTMGSKANFELDSRFSKQTQQLTSFHDLDVNTIPLIIINAYDYKGK  660
             VGTNIPEVYFKSSGQTMGSKANFELDSRFSKQTQQLTSFHDLDVNTIPLIIINAYDYKGK
Sbjct  601   VGTNIPEVYFKSSGQTMGSKANFELDSRFSKQTQQLTSFHDLDVNTIPLIIINAYDYKGK  660

Query  661   NINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIINTNNSEISRLLDSAGI  720
             NINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIINTNNSEISRLLDSAGI
Sbjct  661   NINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIINTNNSEISRLLDSAGI  720

Query  721   AFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVEDESSGQQTLPYVINSDGSI  780
             AFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVEDESSGQQTLPYVINSDGSI
Sbjct  721   AFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVEDESSGQQTLPYVINSDGSI  780

Query  781   EWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDESQHWKKDISGKIIYNVAGKPE  840
             EWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDESQHWKKDISGKIIYNVAGKPE
Sbjct  781   EWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDESQHWKKDISGKIIYNVAGKPE  840

Query  841   VDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINCLEYRPGNSIPITGGLYVPRY  900
             VDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINCLEYRPGNSIPITGGLYVPRY
Sbjct  841   VDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINCLEYRPGNSIPITGGLYVPRY  900

Query  901   TDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSGARLNSVDLNRIYQNMSVWLW  960
             TDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSGARLNSVDLNRIYQNMSVWLW
Sbjct  901   TDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSGARLNSVDLNRIYQNMSVWLW  960

Query  961   NDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPEELKDELTQLGMIYDEKSGSY  1020
             NDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPEELKDELTQLGMIYDEKSGSY
Sbjct  961   NDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPEELKDELTQLGMIYDEKSGSY  1020

Query  1021  AGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPGEVTTRSGGGDITLDMRNNTA  1080
             AGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPGEVTTRSGGGDITLDMRNNTA
Sbjct  1021  AGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPGEVTTRSGGGDITLDMRNNTA  1080

Query  1081  AWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADDLTGREKHELGLKRPPRMSKS  1140
             AWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADDLTGREKHELGLKRPPRMSKS
Sbjct  1081  AWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADDLTGREKHELGLKRPPRMSKS  1140

Query  1141  FVIGGDSPKMQTFTVPYGGLIYAQGGNSQQVKLTFSGTIDAPLYIDGKWRNPLLSGAPIG  1200
             FVIGGDSPKMQTFTVPYGGLIYAQGGNSQQVKLTFSGTIDAPLYIDGKWRNPLLSGAPIG
Sbjct  1141  FVIGGDSPKMQTFTVPYGGLIYAQGGNSQQVKLTFSGTIDAPLYIDGKWRNPLLSGAPIG  1200

Query  1201  EVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADLNDFYARDEGADGDKNRKATDK  1260
             EVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADLNDFYARDEGADGDKNRKATDK
Sbjct  1201  EVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADLNDFYARDEGADGDKNRKATDK  1260

Query  1261  SMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLNTMPLNSWLLWHEVGHNSAEAP  1320
             SMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLNTMPLNSWLLWHEVGHNSAEAP
Sbjct  1261  SMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLNTMPLNSWLLWHEVGHNSAEAP  1320

Query  1321  FNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFDFVNaehghawgaggageRLVMF  1380
             FNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFDFVNAEHGHAWGAGGAGERLVMF
Sbjct  1321  FNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFDFVNAEHGHAWGAGGAGERLVMF  1380

Query  1381  AQLKEWAETEFDINDWYNDKLPGFYIEESGIKGWNLFKLMHRLMRNENDDQINMKGENQC  1440
             AQLKEWAETEFDINDWYNDKLPGFYIEESGIKGWNLFKLMHRLMRNENDDQINMKGENQC
Sbjct  1381  AQLKEWAETEFDINDWYNDKLPGFYIEESGIKGWNLFKLMHRLMRNENDDQINMKGENQC  1440

Query  1441  KISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKAFLYPDDPQPYYEGGITPSGIQRVK  1500
             KISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKAFLYPDDPQPYYEGGITPSGIQRVK
Sbjct  1441  KISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKAFLYPDDPQPYYEGGITPSGIQRVK  1500

Query  1501  SLKLNLPQKNPLSINSVTQH  1520
             SLKLNLPQKNPLSINSVTQH
Sbjct  1501  SLKLNLPQKNPLSINSVTQH  1520

3) VCD_003484 in NC_012668


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 2385 bits (9065),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1520/1520 (100%), Positives = 1520/1520 (100%), Gaps = 0/1520 (0%)

Query  1     MKIRIVSLIVLGFLIGCKHESIITPTVPADGSGGNALNPGLVGGYLPDIGVPDPIISLSM  60
             MKIRIVSLIVLGFLIGCKHESIITPTVPADGSGGNALNPGLVGGYLPDIGVPDPIISLSM
Sbjct  1     MKIRIVSLIVLGFLIGCKHESIITPTVPADGSGGNALNPGLVGGYLPDIGVPDPIISLSM  60

Query  61    TLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEVL  120
             TLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEVL
Sbjct  61    TLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEVL  120

Query  121   SLISADEYRDSPVRQENLQILMKNMATIHGDKISLVFRSTLDALTFENYLRHNLDLPKDQ  180
             SLISADEYRDSPVRQENLQILMKNMATIHGDKISLVFRSTLDALTFENYLRHNLDLPKDQ
Sbjct  121   SLISADEYRDSPVRQENLQILMKNMATIHGDKISLVFRSTLDALTFENYLRHNLDLPKDQ  180

Query  181   FLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTDVIP  240
             FLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTDVIP
Sbjct  181   FLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTDVIP  240

Query  241   SLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFELGS  300
             SLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFELGS
Sbjct  241   SLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFELGS  300

Query  301   TRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKLIIPDKVTQIFSLYPNVINEVISL  360
             TRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKLIIPDKVTQIFSLYPNVINEVISL
Sbjct  301   TRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKLIIPDKVTQIFSLYPNVINEVISL  360

Query  361   SLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKKKsaids  420
             SLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKKKSAIDS
Sbjct  361   SLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKKKSAIDS  420

Query  421   essqiqdiiNKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIANSAFP  480
             ESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIANSAFP
Sbjct  421   ESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIANSAFP  480

Query  481   VLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGEIGKG  540
             VLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGEIGKG
Sbjct  481   VLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGEIGKG  540

Query  541   KLMVLGNARYNSVLVCPNGFSWGGTVKNGTCSLSSDRDDMANFFSNVIRYLTGSTSNDVI  600
             KLMVLGNARYNSVLVCPNGFSWGGTVKNGTCSLSSDRDDMANFFSNVIRYLTGSTSNDVI
Sbjct  541   KLMVLGNARYNSVLVCPNGFSWGGTVKNGTCSLSSDRDDMANFFSNVIRYLTGSTSNDVI  600

Query  601   VGTNIPEVYFKSSGQTMGSKANFELDSRFSKQTQQLTSFHDLDVNTIPLIIINAYDYKGK  660
             VGTNIPEVYFKSSGQTMGSKANFELDSRFSKQTQQLTSFHDLDVNTIPLIIINAYDYKGK
Sbjct  601   VGTNIPEVYFKSSGQTMGSKANFELDSRFSKQTQQLTSFHDLDVNTIPLIIINAYDYKGK  660

Query  661   NINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIINTNNSEISRLLDSAGI  720
             NINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIINTNNSEISRLLDSAGI
Sbjct  661   NINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIINTNNSEISRLLDSAGI  720

Query  721   AFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVEDESSGQQTLPYVINSDGSI  780
             AFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVEDESSGQQTLPYVINSDGSI
Sbjct  721   AFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVEDESSGQQTLPYVINSDGSI  780

Query  781   EWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDESQHWKKDISGKIIYNVAGKPE  840
             EWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDESQHWKKDISGKIIYNVAGKPE
Sbjct  781   EWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDESQHWKKDISGKIIYNVAGKPE  840

Query  841   VDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINCLEYRPGNSIPITGGLYVPRY  900
             VDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINCLEYRPGNSIPITGGLYVPRY
Sbjct  841   VDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINCLEYRPGNSIPITGGLYVPRY  900

Query  901   TDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSGARLNSVDLNRIYQNMSVWLW  960
             TDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSGARLNSVDLNRIYQNMSVWLW
Sbjct  901   TDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSGARLNSVDLNRIYQNMSVWLW  960

Query  961   NDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPEELKDELTQLGMIYDEKSGSY  1020
             NDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPEELKDELTQLGMIYDEKSGSY
Sbjct  961   NDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPEELKDELTQLGMIYDEKSGSY  1020

Query  1021  AGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPGEVTTRSGGGDITLDMRNNTA  1080
             AGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPGEVTTRSGGGDITLDMRNNTA
Sbjct  1021  AGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPGEVTTRSGGGDITLDMRNNTA  1080

Query  1081  AWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADDLTGREKHELGLKRPPRMSKS  1140
             AWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADDLTGREKHELGLKRPPRMSKS
Sbjct  1081  AWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADDLTGREKHELGLKRPPRMSKS  1140

Query  1141  FVIGGDSPKMQTFTVPYGGLIYAQGGNSQQVKLTFSGTIDAPLYIDGKWRNPLLSGAPIG  1200
             FVIGGDSPKMQTFTVPYGGLIYAQGGNSQQVKLTFSGTIDAPLYIDGKWRNPLLSGAPIG
Sbjct  1141  FVIGGDSPKMQTFTVPYGGLIYAQGGNSQQVKLTFSGTIDAPLYIDGKWRNPLLSGAPIG  1200

Query  1201  EVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADLNDFYARDEGADGDKNRKATDK  1260
             EVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADLNDFYARDEGADGDKNRKATDK
Sbjct  1201  EVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADLNDFYARDEGADGDKNRKATDK  1260

Query  1261  SMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLNTMPLNSWLLWHEVGHNSAEAP  1320
             SMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLNTMPLNSWLLWHEVGHNSAEAP
Sbjct  1261  SMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLNTMPLNSWLLWHEVGHNSAEAP  1320

Query  1321  FNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFDFVNaehghawgaggageRLVMF  1380
             FNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFDFVNAEHGHAWGAGGAGERLVMF
Sbjct  1321  FNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFDFVNAEHGHAWGAGGAGERLVMF  1380

Query  1381  AQLKEWAETEFDINDWYNDKLPGFYIEESGIKGWNLFKLMHRLMRNENDDQINMKGENQC  1440
             AQLKEWAETEFDINDWYNDKLPGFYIEESGIKGWNLFKLMHRLMRNENDDQINMKGENQC
Sbjct  1381  AQLKEWAETEFDINDWYNDKLPGFYIEESGIKGWNLFKLMHRLMRNENDDQINMKGENQC  1440

Query  1441  KISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKAFLYPDDPQPYYEGGITPSGIQRVK  1500
             KISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKAFLYPDDPQPYYEGGITPSGIQRVK
Sbjct  1441  KISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKAFLYPDDPQPYYEGGITPSGIQRVK  1500

Query  1501  SLKLNLPQKNPLSINSVTQH  1520
             SLKLNLPQKNPLSINSVTQH
Sbjct  1501  SLKLNLPQKNPLSINSVTQH  1520

4) Vch1786_I0350 in NC_016445


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 2385 bits (9065),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1520/1520 (100%), Positives = 1520/1520 (100%), Gaps = 0/1520 (0%)

Query  1     MKIRIVSLIVLGFLIGCKHESIITPTVPADGSGGNALNPGLVGGYLPDIGVPDPIISLSM  60
             MKIRIVSLIVLGFLIGCKHESIITPTVPADGSGGNALNPGLVGGYLPDIGVPDPIISLSM
Sbjct  1     MKIRIVSLIVLGFLIGCKHESIITPTVPADGSGGNALNPGLVGGYLPDIGVPDPIISLSM  60

Query  61    TLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEVL  120
             TLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEVL
Sbjct  61    TLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEVL  120

Query  121   SLISADEYRDSPVRQENLQILMKNMATIHGDKISLVFRSTLDALTFENYLRHNLDLPKDQ  180
             SLISADEYRDSPVRQENLQILMKNMATIHGDKISLVFRSTLDALTFENYLRHNLDLPKDQ
Sbjct  121   SLISADEYRDSPVRQENLQILMKNMATIHGDKISLVFRSTLDALTFENYLRHNLDLPKDQ  180

Query  181   FLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTDVIP  240
             FLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTDVIP
Sbjct  181   FLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTDVIP  240

Query  241   SLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFELGS  300
             SLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFELGS
Sbjct  241   SLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFELGS  300

Query  301   TRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKLIIPDKVTQIFSLYPNVINEVISL  360
             TRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKLIIPDKVTQIFSLYPNVINEVISL
Sbjct  301   TRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKLIIPDKVTQIFSLYPNVINEVISL  360

Query  361   SLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKKKsaids  420
             SLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKKKSAIDS
Sbjct  361   SLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKKKSAIDS  420

Query  421   essqiqdiiNKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIANSAFP  480
             ESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIANSAFP
Sbjct  421   ESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIANSAFP  480

Query  481   VLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGEIGKG  540
             VLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGEIGKG
Sbjct  481   VLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGEIGKG  540

Query  541   KLMVLGNARYNSVLVCPNGFSWGGTVKNGTCSLSSDRDDMANFFSNVIRYLTGSTSNDVI  600
             KLMVLGNARYNSVLVCPNGFSWGGTVKNGTCSLSSDRDDMANFFSNVIRYLTGSTSNDVI
Sbjct  541   KLMVLGNARYNSVLVCPNGFSWGGTVKNGTCSLSSDRDDMANFFSNVIRYLTGSTSNDVI  600

Query  601   VGTNIPEVYFKSSGQTMGSKANFELDSRFSKQTQQLTSFHDLDVNTIPLIIINAYDYKGK  660
             VGTNIPEVYFKSSGQTMGSKANFELDSRFSKQTQQLTSFHDLDVNTIPLIIINAYDYKGK
Sbjct  601   VGTNIPEVYFKSSGQTMGSKANFELDSRFSKQTQQLTSFHDLDVNTIPLIIINAYDYKGK  660

Query  661   NINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIINTNNSEISRLLDSAGI  720
             NINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIINTNNSEISRLLDSAGI
Sbjct  661   NINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIINTNNSEISRLLDSAGI  720

Query  721   AFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVEDESSGQQTLPYVINSDGSI  780
             AFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVEDESSGQQTLPYVINSDGSI
Sbjct  721   AFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVEDESSGQQTLPYVINSDGSI  780

Query  781   EWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDESQHWKKDISGKIIYNVAGKPE  840
             EWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDESQHWKKDISGKIIYNVAGKPE
Sbjct  781   EWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDESQHWKKDISGKIIYNVAGKPE  840

Query  841   VDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINCLEYRPGNSIPITGGLYVPRY  900
             VDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINCLEYRPGNSIPITGGLYVPRY
Sbjct  841   VDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINCLEYRPGNSIPITGGLYVPRY  900

Query  901   TDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSGARLNSVDLNRIYQNMSVWLW  960
             TDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSGARLNSVDLNRIYQNMSVWLW
Sbjct  901   TDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSGARLNSVDLNRIYQNMSVWLW  960

Query  961   NDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPEELKDELTQLGMIYDEKSGSY  1020
             NDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPEELKDELTQLGMIYDEKSGSY
Sbjct  961   NDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPEELKDELTQLGMIYDEKSGSY  1020

Query  1021  AGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPGEVTTRSGGGDITLDMRNNTA  1080
             AGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPGEVTTRSGGGDITLDMRNNTA
Sbjct  1021  AGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPGEVTTRSGGGDITLDMRNNTA  1080

Query  1081  AWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADDLTGREKHELGLKRPPRMSKS  1140
             AWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADDLTGREKHELGLKRPPRMSKS
Sbjct  1081  AWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADDLTGREKHELGLKRPPRMSKS  1140

Query  1141  FVIGGDSPKMQTFTVPYGGLIYAQGGNSQQVKLTFSGTIDAPLYIDGKWRNPLLSGAPIG  1200
             FVIGGDSPKMQTFTVPYGGLIYAQGGNSQQVKLTFSGTIDAPLYIDGKWRNPLLSGAPIG
Sbjct  1141  FVIGGDSPKMQTFTVPYGGLIYAQGGNSQQVKLTFSGTIDAPLYIDGKWRNPLLSGAPIG  1200

Query  1201  EVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADLNDFYARDEGADGDKNRKATDK  1260
             EVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADLNDFYARDEGADGDKNRKATDK
Sbjct  1201  EVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADLNDFYARDEGADGDKNRKATDK  1260

Query  1261  SMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLNTMPLNSWLLWHEVGHNSAEAP  1320
             SMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLNTMPLNSWLLWHEVGHNSAEAP
Sbjct  1261  SMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLNTMPLNSWLLWHEVGHNSAEAP  1320

Query  1321  FNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFDFVNaehghawgaggageRLVMF  1380
             FNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFDFVNAEHGHAWGAGGAGERLVMF
Sbjct  1321  FNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFDFVNAEHGHAWGAGGAGERLVMF  1380

Query  1381  AQLKEWAETEFDINDWYNDKLPGFYIEESGIKGWNLFKLMHRLMRNENDDQINMKGENQC  1440
             AQLKEWAETEFDINDWYNDKLPGFYIEESGIKGWNLFKLMHRLMRNENDDQINMKGENQC
Sbjct  1381  AQLKEWAETEFDINDWYNDKLPGFYIEESGIKGWNLFKLMHRLMRNENDDQINMKGENQC  1440

Query  1441  KISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKAFLYPDDPQPYYEGGITPSGIQRVK  1500
             KISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKAFLYPDDPQPYYEGGITPSGIQRVK
Sbjct  1441  KISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKAFLYPDDPQPYYEGGITPSGIQRVK  1500

Query  1501  SLKLNLPQKNPLSINSVTQH  1520
             SLKLNLPQKNPLSINSVTQH
Sbjct  1501  SLKLNLPQKNPLSINSVTQH  1520

5) VC0845 in NC_002505


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 2385 bits (9065),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1520/1520 (100%), Positives = 1520/1520 (100%), Gaps = 0/1520 (0%)

Query  1     MKIRIVSLIVLGFLIGCKHESIITPTVPADGSGGNALNPGLVGGYLPDIGVPDPIISLSM  60
             MKIRIVSLIVLGFLIGCKHESIITPTVPADGSGGNALNPGLVGGYLPDIGVPDPIISLSM
Sbjct  1     MKIRIVSLIVLGFLIGCKHESIITPTVPADGSGGNALNPGLVGGYLPDIGVPDPIISLSM  60

Query  61    TLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEVL  120
             TLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEVL
Sbjct  61    TLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEVL  120

Query  121   SLISADEYRDSPVRQENLQILMKNMATIHGDKISLVFRSTLDALTFENYLRHNLDLPKDQ  180
             SLISADEYRDSPVRQENLQILMKNMATIHGDKISLVFRSTLDALTFENYLRHNLDLPKDQ
Sbjct  121   SLISADEYRDSPVRQENLQILMKNMATIHGDKISLVFRSTLDALTFENYLRHNLDLPKDQ  180

Query  181   FLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTDVIP  240
             FLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTDVIP
Sbjct  181   FLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTDVIP  240

Query  241   SLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFELGS  300
             SLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFELGS
Sbjct  241   SLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFELGS  300

Query  301   TRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKLIIPDKVTQIFSLYPNVINEVISL  360
             TRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKLIIPDKVTQIFSLYPNVINEVISL
Sbjct  301   TRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKLIIPDKVTQIFSLYPNVINEVISL  360

Query  361   SLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKKKsaids  420
             SLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKKKSAIDS
Sbjct  361   SLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKKKSAIDS  420

Query  421   essqiqdiiNKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIANSAFP  480
             ESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIANSAFP
Sbjct  421   ESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIANSAFP  480

Query  481   VLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGEIGKG  540
             VLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGEIGKG
Sbjct  481   VLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGEIGKG  540

Query  541   KLMVLGNARYNSVLVCPNGFSWGGTVKNGTCSLSSDRDDMANFFSNVIRYLTGSTSNDVI  600
             KLMVLGNARYNSVLVCPNGFSWGGTVKNGTCSLSSDRDDMANFFSNVIRYLTGSTSNDVI
Sbjct  541   KLMVLGNARYNSVLVCPNGFSWGGTVKNGTCSLSSDRDDMANFFSNVIRYLTGSTSNDVI  600

Query  601   VGTNIPEVYFKSSGQTMGSKANFELDSRFSKQTQQLTSFHDLDVNTIPLIIINAYDYKGK  660
             VGTNIPEVYFKSSGQTMGSKANFELDSRFSKQTQQLTSFHDLDVNTIPLIIINAYDYKGK
Sbjct  601   VGTNIPEVYFKSSGQTMGSKANFELDSRFSKQTQQLTSFHDLDVNTIPLIIINAYDYKGK  660

Query  661   NINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIINTNNSEISRLLDSAGI  720
             NINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIINTNNSEISRLLDSAGI
Sbjct  661   NINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIINTNNSEISRLLDSAGI  720

Query  721   AFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVEDESSGQQTLPYVINSDGSI  780
             AFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVEDESSGQQTLPYVINSDGSI
Sbjct  721   AFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVEDESSGQQTLPYVINSDGSI  780

Query  781   EWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDESQHWKKDISGKIIYNVAGKPE  840
             EWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDESQHWKKDISGKIIYNVAGKPE
Sbjct  781   EWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDESQHWKKDISGKIIYNVAGKPE  840

Query  841   VDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINCLEYRPGNSIPITGGLYVPRY  900
             VDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINCLEYRPGNSIPITGGLYVPRY
Sbjct  841   VDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINCLEYRPGNSIPITGGLYVPRY  900

Query  901   TDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSGARLNSVDLNRIYQNMSVWLW  960
             TDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSGARLNSVDLNRIYQNMSVWLW
Sbjct  901   TDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSGARLNSVDLNRIYQNMSVWLW  960

Query  961   NDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPEELKDELTQLGMIYDEKSGSY  1020
             NDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPEELKDELTQLGMIYDEKSGSY
Sbjct  961   NDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPEELKDELTQLGMIYDEKSGSY  1020

Query  1021  AGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPGEVTTRSGGGDITLDMRNNTA  1080
             AGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPGEVTTRSGGGDITLDMRNNTA
Sbjct  1021  AGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPGEVTTRSGGGDITLDMRNNTA  1080

Query  1081  AWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADDLTGREKHELGLKRPPRMSKS  1140
             AWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADDLTGREKHELGLKRPPRMSKS
Sbjct  1081  AWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADDLTGREKHELGLKRPPRMSKS  1140

Query  1141  FVIGGDSPKMQTFTVPYGGLIYAQGGNSQQVKLTFSGTIDAPLYIDGKWRNPLLSGAPIG  1200
             FVIGGDSPKMQTFTVPYGGLIYAQGGNSQQVKLTFSGTIDAPLYIDGKWRNPLLSGAPIG
Sbjct  1141  FVIGGDSPKMQTFTVPYGGLIYAQGGNSQQVKLTFSGTIDAPLYIDGKWRNPLLSGAPIG  1200

Query  1201  EVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADLNDFYARDEGADGDKNRKATDK  1260
             EVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADLNDFYARDEGADGDKNRKATDK
Sbjct  1201  EVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADLNDFYARDEGADGDKNRKATDK  1260

Query  1261  SMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLNTMPLNSWLLWHEVGHNSAEAP  1320
             SMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLNTMPLNSWLLWHEVGHNSAEAP
Sbjct  1261  SMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLNTMPLNSWLLWHEVGHNSAEAP  1320

Query  1321  FNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFDFVNaehghawgaggageRLVMF  1380
             FNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFDFVNAEHGHAWGAGGAGERLVMF
Sbjct  1321  FNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFDFVNAEHGHAWGAGGAGERLVMF  1380

Query  1381  AQLKEWAETEFDINDWYNDKLPGFYIEESGIKGWNLFKLMHRLMRNENDDQINMKGENQC  1440
             AQLKEWAETEFDINDWYNDKLPGFYIEESGIKGWNLFKLMHRLMRNENDDQINMKGENQC
Sbjct  1381  AQLKEWAETEFDINDWYNDKLPGFYIEESGIKGWNLFKLMHRLMRNENDDQINMKGENQC  1440

Query  1441  KISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKAFLYPDDPQPYYEGGITPSGIQRVK  1500
             KISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKAFLYPDDPQPYYEGGITPSGIQRVK
Sbjct  1441  KISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKAFLYPDDPQPYYEGGITPSGIQRVK  1500

Query  1501  SLKLNLPQKNPLSINSVTQH  1520
             SLKLNLPQKNPLSINSVTQH
Sbjct  1501  SLKLNLPQKNPLSINSVTQH  1520

6) VC0395_A0370 in NC_009457


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 2252 bits (8559),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1439/1439 (100%), Positives = 1439/1439 (100%), Gaps = 0/1439 (0%)

Query  5     FQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEVLSLISADEYRDSPVRQENLQIL  64
             FQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEVLSLISADEYRDSPVRQENLQIL
Sbjct  82    FQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEVLSLISADEYRDSPVRQENLQIL  141

Query  65    MKNMATIHGDKISLVFRSTLDALTFENYLRHNLDLPKDQFLEAITEKIANDNQVDKQPST  124
             MKNMATIHGDKISLVFRSTLDALTFENYLRHNLDLPKDQFLEAITEKIANDNQVDKQPST
Sbjct  142   MKNMATIHGDKISLVFRSTLDALTFENYLRHNLDLPKDQFLEAITEKIANDNQVDKQPST  201

Query  125   HVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTDVIPSLGRLLDSQGRVINGVSYFSN  184
             HVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTDVIPSLGRLLDSQGRVINGVSYFSN
Sbjct  202   HVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTDVIPSLGRLLDSQGRVINGVSYFSN  261

Query  185   NTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFELGSTRANKTDFYISELGKDNEGKN  244
             NTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFELGSTRANKTDFYISELGKDNEGKN
Sbjct  262   NTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFELGSTRANKTDFYISELGKDNEGKN  321

Query  245   AEALIHRYASIDDSKLIIPDKVTQIFSLYPNVINEVISLSLPNGDIELDIGDGKTQIVPG  304
             AEALIHRYASIDDSKLIIPDKVTQIFSLYPNVINEVISLSLPNGDIELDIGDGKTQIVPG
Sbjct  322   AEALIHRYASIDDSKLIIPDKVTQIFSLYPNVINEVISLSLPNGDIELDIGDGKTQIVPG  381

Query  305   EFFKQFDSGLAALIDQSISPISRFKFEDSLPKKKsaidsessqiqdiiNKLWGATDTVQA  364
             EFFKQFDSGLAALIDQSISPISRFKFEDSLPKKKSAIDSESSQIQDIINKLWGATDTVQA
Sbjct  382   EFFKQFDSGLAALIDQSISPISRFKFEDSLPKKKSAIDSESSQIQDIINKLWGATDTVQA  441

Query  365   NGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIANSAFPVLMARNDNNYWIDFGKPKAWD  424
             NGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIANSAFPVLMARNDNNYWIDFGKPKAWD
Sbjct  442   NGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIANSAFPVLMARNDNNYWIDFGKPKAWD  501

Query  425   SNSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGEIGKGKLMVLGNARYNSVLVCPNGFS  484
             SNSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGEIGKGKLMVLGNARYNSVLVCPNGFS
Sbjct  502   SNSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGEIGKGKLMVLGNARYNSVLVCPNGFS  561

Query  485   WGGTVKNGTCSLSSDRDDMANFFSNVIRYLTGSTSNDVIVGTNIPEVYFKSSGQTMGSKA  544
             WGGTVKNGTCSLSSDRDDMANFFSNVIRYLTGSTSNDVIVGTNIPEVYFKSSGQTMGSKA
Sbjct  562   WGGTVKNGTCSLSSDRDDMANFFSNVIRYLTGSTSNDVIVGTNIPEVYFKSSGQTMGSKA  621

Query  545   NFELDSRFSKQTQQLTSFHDLDVNTIPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSR  604
             NFELDSRFSKQTQQLTSFHDLDVNTIPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSR
Sbjct  622   NFELDSRFSKQTQQLTSFHDLDVNTIPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSR  681

Query  605   SDVTDLIDYINNGGSVLMMETIINTNNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPD  664
             SDVTDLIDYINNGGSVLMMETIINTNNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPD
Sbjct  682   SDVTDLIDYINNGGSVLMMETIINTNNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPD  741

Query  665   RPRSQREHGIWVIERYAAVEDESSGQQTLPYVINSDGSIEWKYIVENRPDDKPKLEVASW  724
             RPRSQREHGIWVIERYAAVEDESSGQQTLPYVINSDGSIEWKYIVENRPDDKPKLEVASW
Sbjct  742   RPRSQREHGIWVIERYAAVEDESSGQQTLPYVINSDGSIEWKYIVENRPDDKPKLEVASW  801

Query  725   VESEAGDKLITHYAFIDESQHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSS  784
             VESEAGDKLITHYAFIDESQHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSS
Sbjct  802   VESEAGDKLITHYAFIDESQHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSS  861

Query  785   GQRAYSECKNSEFHYEINCLEYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGT  844
             GQRAYSECKNSEFHYEINCLEYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGT
Sbjct  862   GQRAYSECKNSEFHYEINCLEYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGT  921

Query  845   NIHALYQHERYFRTKGKSGARLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFT  904
             NIHALYQHERYFRTKGKSGARLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFT
Sbjct  922   NIHALYQHERYFRTKGKSGARLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFT  981

Query  905   QYLNCYTSNNAGGNTTCPEELKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLM  964
             QYLNCYTSNNAGGNTTCPEELKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLM
Sbjct  982   QYLNCYTSNNAGGNTTCPEELKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLM  1041

Query  965   LGRSFWDLDIKVDVRKYPGEVTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFS  1024
             LGRSFWDLDIKVDVRKYPGEVTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFS
Sbjct  1042  LGRSFWDLDIKVDVRKYPGEVTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFS  1101

Query  1025  VSVSGETSPVTITIALADDLTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLI  1084
             VSVSGETSPVTITIALADDLTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLI
Sbjct  1102  VSVSGETSPVTITIALADDLTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLI  1161

Query  1085  YAQGGNSQQVKLTFSGTIDAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGY  1144
             YAQGGNSQQVKLTFSGTIDAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGY
Sbjct  1162  YAQGGNSQQVKLTFSGTIDAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGY  1221

Query  1145  LGGIEQFAKDLDQFSADLNDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAH  1204
             LGGIEQFAKDLDQFSADLNDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAH
Sbjct  1222  LGGIEQFAKDLDQFSADLNDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAH  1281

Query  1205  SGYPVMNDSFITSSRSLNTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDR  1264
             SGYPVMNDSFITSSRSLNTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDR
Sbjct  1282  SGYPVMNDSFITSSRSLNTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDR  1341

Query  1265  HQGKMSRVEQDIRYAFDFVNaehghawgaggageRLVMFAQLKEWAETEFDINDWYNDKL  1324
             HQGKMSRVEQDIRYAFDFVNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYNDKL
Sbjct  1342  HQGKMSRVEQDIRYAFDFVNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYNDKL  1401

Query  1325  PGFYIEESGIKGWNLFKLMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQT  1384
             PGFYIEESGIKGWNLFKLMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQT
Sbjct  1402  PGFYIEESGIKGWNLFKLMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQT  1461

Query  1385  DLSEFFKAWNPGSKAFLYPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQH  1443
             DLSEFFKAWNPGSKAFLYPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQH
Sbjct  1462  DLSEFFKAWNPGSKAFLYPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQH  1520

7) VC395_0861 in NC_012582


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 2162 bits (8216),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1379/1379 (100%), Positives = 1379/1379 (100%), Gaps = 0/1379 (0%)

Query  1     MKNMATIHGDKISLVFRSTLDALTFENYLRHNLDLPKDQFLEAITEKIANDNQVDKQPST  60
             MKNMATIHGDKISLVFRSTLDALTFENYLRHNLDLPKDQFLEAITEKIANDNQVDKQPST
Sbjct  142   MKNMATIHGDKISLVFRSTLDALTFENYLRHNLDLPKDQFLEAITEKIANDNQVDKQPST  201

Query  61    HVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTDVIPSLGRLLDSQGRVINGVSYFSN  120
             HVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTDVIPSLGRLLDSQGRVINGVSYFSN
Sbjct  202   HVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTDVIPSLGRLLDSQGRVINGVSYFSN  261

Query  121   NTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFELGSTRANKTDFYISELGKDNEGKN  180
             NTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFELGSTRANKTDFYISELGKDNEGKN
Sbjct  262   NTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFELGSTRANKTDFYISELGKDNEGKN  321

Query  181   AEALIHRYASIDDSKLIIPDKVTQIFSLYPNVINEVISLSLPNGDIELDIGDGKTQIVPG  240
             AEALIHRYASIDDSKLIIPDKVTQIFSLYPNVINEVISLSLPNGDIELDIGDGKTQIVPG
Sbjct  322   AEALIHRYASIDDSKLIIPDKVTQIFSLYPNVINEVISLSLPNGDIELDIGDGKTQIVPG  381

Query  241   EFFKQFDSGLAALIDQSISPISRFKFEDSLPKKKsaidsessqiqdiiNKLWGATDTVQA  300
             EFFKQFDSGLAALIDQSISPISRFKFEDSLPKKKSAIDSESSQIQDIINKLWGATDTVQA
Sbjct  382   EFFKQFDSGLAALIDQSISPISRFKFEDSLPKKKSAIDSESSQIQDIINKLWGATDTVQA  441

Query  301   NGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIANSAFPVLMARNDNNYWIDFGKPKAWD  360
             NGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIANSAFPVLMARNDNNYWIDFGKPKAWD
Sbjct  442   NGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIANSAFPVLMARNDNNYWIDFGKPKAWD  501

Query  361   SNSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGEIGKGKLMVLGNARYNSVLVCPNGFS  420
             SNSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGEIGKGKLMVLGNARYNSVLVCPNGFS
Sbjct  502   SNSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGEIGKGKLMVLGNARYNSVLVCPNGFS  561

Query  421   WGGTVKNGTCSLSSDRDDMANFFSNVIRYLTGSTSNDVIVGTNIPEVYFKSSGQTMGSKA  480
             WGGTVKNGTCSLSSDRDDMANFFSNVIRYLTGSTSNDVIVGTNIPEVYFKSSGQTMGSKA
Sbjct  562   WGGTVKNGTCSLSSDRDDMANFFSNVIRYLTGSTSNDVIVGTNIPEVYFKSSGQTMGSKA  621

Query  481   NFELDSRFSKQTQQLTSFHDLDVNTIPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSR  540
             NFELDSRFSKQTQQLTSFHDLDVNTIPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSR
Sbjct  622   NFELDSRFSKQTQQLTSFHDLDVNTIPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSR  681

Query  541   SDVTDLIDYINNGGSVLMMETIINTNNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPD  600
             SDVTDLIDYINNGGSVLMMETIINTNNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPD
Sbjct  682   SDVTDLIDYINNGGSVLMMETIINTNNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPD  741

Query  601   RPRSQREHGIWVIERYAAVEDESSGQQTLPYVINSDGSIEWKYIVENRPDDKPKLEVASW  660
             RPRSQREHGIWVIERYAAVEDESSGQQTLPYVINSDGSIEWKYIVENRPDDKPKLEVASW
Sbjct  742   RPRSQREHGIWVIERYAAVEDESSGQQTLPYVINSDGSIEWKYIVENRPDDKPKLEVASW  801

Query  661   VESEAGDKLITHYAFIDESQHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSS  720
             VESEAGDKLITHYAFIDESQHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSS
Sbjct  802   VESEAGDKLITHYAFIDESQHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSS  861

Query  721   GQRAYSECKNSEFHYEINCLEYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGT  780
             GQRAYSECKNSEFHYEINCLEYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGT
Sbjct  862   GQRAYSECKNSEFHYEINCLEYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGT  921

Query  781   NIHALYQHERYFRTKGKSGARLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFT  840
             NIHALYQHERYFRTKGKSGARLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFT
Sbjct  922   NIHALYQHERYFRTKGKSGARLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFT  981

Query  841   QYLNCYTSNNAGGNTTCPEELKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLM  900
             QYLNCYTSNNAGGNTTCPEELKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLM
Sbjct  982   QYLNCYTSNNAGGNTTCPEELKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLM  1041

Query  901   LGRSFWDLDIKVDVRKYPGEVTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFS  960
             LGRSFWDLDIKVDVRKYPGEVTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFS
Sbjct  1042  LGRSFWDLDIKVDVRKYPGEVTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFS  1101

Query  961   VSVSGETSPVTITIALADDLTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLI  1020
             VSVSGETSPVTITIALADDLTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLI
Sbjct  1102  VSVSGETSPVTITIALADDLTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLI  1161

Query  1021  YAQGGNSQQVKLTFSGTIDAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGY  1080
             YAQGGNSQQVKLTFSGTIDAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGY
Sbjct  1162  YAQGGNSQQVKLTFSGTIDAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGY  1221

Query  1081  LGGIEQFAKDLDQFSADLNDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAH  1140
             LGGIEQFAKDLDQFSADLNDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAH
Sbjct  1222  LGGIEQFAKDLDQFSADLNDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAH  1281

Query  1141  SGYPVMNDSFITSSRSLNTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDR  1200
             SGYPVMNDSFITSSRSLNTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDR
Sbjct  1282  SGYPVMNDSFITSSRSLNTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDR  1341

Query  1201  HQGKMSRVEQDIRYAFDFVNaehghawgaggageRLVMFAQLKEWAETEFDINDWYNDKL  1260
             HQGKMSRVEQDIRYAFDFVNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYNDKL
Sbjct  1342  HQGKMSRVEQDIRYAFDFVNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYNDKL  1401

Query  1261  PGFYIEESGIKGWNLFKLMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQT  1320
             PGFYIEESGIKGWNLFKLMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQT
Sbjct  1402  PGFYIEESGIKGWNLFKLMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQT  1461

Query  1321  DLSEFFKAWNPGSKAFLYPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQH  1379
             DLSEFFKAWNPGSKAFLYPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQH
Sbjct  1462  DLSEFFKAWNPGSKAFLYPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQH  1520

8) VV1_0767 in NC_004459


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1693 bits (6429),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 994/1531 (65%), Positives = 1275/1531 (84%), Gaps = 26/1531 (1%)

Query  1     MKRSLLSLLIASMLVACGSEDRvlapvlpptvepel----------pDIGVDDPIIVSAL  50
             MK  ++SL++ + L++C  E  + + V +     +           PDIGV DPII  ++
Sbjct  1     MKIRIVSLIVLGFLIGCKHESIITPTVPADGSGGNALNPGLVGGYLPDIGVPDPIISLSM  60

Query  51    SLDGHLMLSGSIECNGGPANQFDVPQKEDVVCMVQGRTLATFTTPYVAEQTRSRAVNVEV  110
             +LDG+L + +S+ CN+  A++F+++QK++V C ++GR++ATFT+P+ A++  +R  + EV
Sbjct  61    TLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKN-GRNTDSEV  119

Query  111   LSLAQADEYKASPVRLSNIQTLIKNIGSTQGNTIELDLSSSRDALTFEHYFDHNLDMPVD  170
             LSL  ADEY+ SPVR  N+Q L+KN+++ +G+ I L + S+ DALTFE+Y+ HNLD+P D
Sbjct  120   LSLISADEYRDSPVRQENLQILMKNMATIHGDKISLVFRSTLDALTFENYLRHNLDLPKD  179

Query  171   EFRALITEKVSNDNQVDKQPTTHVPDVPPAVTPGASSDLTSGFVSASAEESLVYKPSEVI  230
             +F   ITEK++NDNQVDKQP+THVP+++P+ TPG+SS+L S FVSA+AEESL Y P++VI
Sbjct  180   QFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTDVI  239

Query  231   LTQAQLLNEQGLPVNGIAYFSAHGRGVTGVDKQGNMIGDGRFEFSWGENISFAIDTFELG  290
              + ++LL+ QG  +NG++YFS + RG+TGVDK G ++ DG FEFSWG+ ISF+IDTFELG
Sbjct  240   PSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFELG  299

Query  291   EIRGNKTAFQLTELAQGNEGKNVEKLVHRYADRTDSKVTLPQQVTEVFALYPNVVNEAIs  350
               R+NKT F ++EL+++NEGKN E L+HRYA   DSK+ +P++VT++F+LYPNV+NE IS
Sbjct  300   STRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKLIIPDKVTQIFSLYPNVINEVIS  359

Query  351   lslnsddtlldVGGGQTQLVPGEFEQQFAHGLAADIDQQLAKPSARSNFE--LPVVKGAL  408
             LSL ++D  LD+G+G+TQ+VPGEF +QF  GLAA IDQ ++ P +R +FE  LP  K+A+
Sbjct  360   LSLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQSIS-PISRFKFEDSLPKKKSAI  418

Query  409   DPQASRIQADIQKLWGATHQVQQAGWKKVERFHVFHDSTNFYGSTGNARGQAAVNIANSA  468
             D+++S+IQ  I+KLWGAT+ VQ  GWKKV+RFH+FHDSTNFYGSTG+AR+QAAVNIANSA
Sbjct  419   DSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIANSA  478

Query  469   FPVMMARNDNNYWIDFGQPKAWDAQGLAFITEAPSSVVPEKVSAETATFNLPFMSIGELG  528
             FPV+MARNDNNYWIDFG+PKAWD+++LAFITEAPS+VVP+KVS +T+TFNLPF+S+GE+G
Sbjct  479   FPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGEIG  538

Query  529   KGKVMVMGNARYNSVLVCPNGFSWNGGVNQDGSCKQSSDTDDMANFFANTLRYLTGKSAQ  588
             KGK+MV+GNARYNSVLVCPNGFSW G V+ +G+C  SSD DDMANFF+N +RYLTG +++
Sbjct  539   KGKLMVLGNARYNSVLVCPNGFSWGGTVK-NGTCSLSSDRDDMANFFSNVIRYLTGSTSN  597

Query  589   ELTVGTNIPYVYFKRHGQVMGERADFVIDPRLAAKTEQLSDFGYLDPEAMPVVIINGYEY  648
             ++ VGTNIP VYFK  GQ MG +A+F +D+R++ +T+QL+ F  LD +++P++IIN+Y+Y
Sbjct  598   DVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSKQTQQLTSFHDLDVNTIPLIIINAYDY  657

Query  649   LGHAGIGAYDLPMSANINKPKLSQQDVSDLIDYVNRGGNVLMMETIINRANAGEVARLLD  708
              G    ++YD+P+SA++  PKLS+ DV+DLIDY+N GG+VLMMETIIN +N +E++RLLD
Sbjct  658   KGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIIN-TNNSEISRLLD  716

Query  709   SAGIAFGMGQSVVPNGNGPSGGYPDRPRNQRQHGIWVLERYAAVQG-ADGKPVLPYTIND  767
             SAGIAFG+G+SVV++GNGPSGG PDRPR+QR+HGIWV+ERYAAV++ + G+  LPY IN 
Sbjct  717   SAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVEDESSGQQTLPYVINS  776

Query  768   DGSVEWQYQVEGKPDDKPNLEIARWPELDEHGEPKLDKDGNPIINVAFIDESQHWRKDKE  827
             DGS+EW+Y VE +PDDKP+LE+A W  ++ ++  KL      I + AFIDESQHW+KD  
Sbjct  777   DGSIEWKYIVENRPDDKPKLEVASW--VESEAGDKL------ITHYAFIDESQHWKKDIS  828

Query  828   GHVVVDEHQQPILDQDSLAKAKQRILNAFL-VDGEPAYQECHDSQFHYEVNCLEYRPGNG  886
             G ++ +   +P +D+ SL+ AK+++L+AF    G+ AY EC +S+FHYE+NCLEYRPGN+
Sbjct  829   GKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINCLEYRPGNS  888

Query  887   IPTGGGMHVPHYTELKLGEAESQAMVKAANLGTNIEALYQHERYFRTKGKVGERLSSVDL  946
             IP  GG+ VP+YT++KLGE+E++AMVKAANLGTNI+ALYQHERYFRTKGK G RL+SVDL
Sbjct  889   IPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSGARLNSVDL  948

Query  947   NRIYQNMTVWLWNDLDYRYESSSEDELGFQRFTQFLNCYTNDVAGGNTHCPEEVKSELNR  1006
             NRIYQNM+VWLWNDLDYRY+    DELGF+ FTQ+LNCYT++ AGGNT CPEE+K EL +
Sbjct  949   NRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPEELKDELTQ  1008

Query  1007  LNMVYGDEAGEYAGQMNPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRAFPgeagegagg  1066
             L M+Y++ +G YAGQM+PSYPLNYMEKPLTRLMLGRSFWDLDIKVDVR +PGE    +GG
Sbjct  1009  LGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPGEVTTRSGG  1068

Query  1067  RNVTLDMRNLTTAWFAGNRQPTGQWAVAQQPFTVSVAGEEAPVTITIALADDLTGREKHE  1126
              ++TLDMRN T+AWFAGNRQPTGQWA A+QPF+VSV+GE +PVTITIALADDLTGREKHE
Sbjct  1069  GDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADDLTGREKHE  1128

Query  1127  LGLQRPPRMTKSFVIGGSHATSQQFTVPYGGLIYAQGGNSEQVSLTFTGTVDAPLYKQGK  1186
             LGL+RPPRM+KSFVIGG  +  Q FTVPYGGLIYAQGGNS+QV LTF+GT+DAPLY +GK
Sbjct  1129  LGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNSQQVKLTFSGTIDAPLYIDGK  1188

Query  1187  WQNPLSSPAPMGEVISDTFIFTAPKANLNASGYSGGIEQFARDLDRFSADLNDFYARDEG  1246
             W+NPL S AP+GEV+SDTFIFTAPKANLNA GY GGIEQFA+DLD+FSADLNDFYARDEG
Sbjct  1189  WRNPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADLNDFYARDEG  1248

Query  1247  VEGRLNRQATSPSNPNNRHHFVNDVAISIGAAHSGYPVMNGSFNAKSQSLNTAPLNSWLL  1306
              +G  NR+AT  S PNNRHHFVNDVAIS+GAAHSGYPVMN+SF + S+SLNT PLNSWLL
Sbjct  1249  ADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLNTMPLNSWLL  1308

Query  1307  WHEVGHNAAEAPFNVDGATEVVNNLLALYMQDQYLGKMARVEQDIRIAPDFVRMENGYAW  1366
             WHEVGHN+AEAPFNVDGATEVVNNLLALYMQD+  GKM+RVEQDIR A DFV  E+G AW
Sbjct  1309  WHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFDFVNAEHGHAW  1368

Query  1367  GAGGAGERLVMFAQLKEWAENEFDIQQWYGDELPSYYSSKEGVTGWNLFKLMHRLTRNKT  1426
             GAGGAGERLVMFAQLKEWAE EFDI++WY D LP++Y    G+ GWNLFKLMHRL RN  
Sbjct  1369  GAGGAGERLVMFAQLKEWAETEFDINDWYNDKLPGFYIEESGIKGWNLFKLMHRLMRNEN  1428

Query  1427  EGLSELKGENICQASGFGKSDMLMLCASYAAQTDLSAFFQAWNPGSKAFLYPGDPTPRYE  1486
             ++  ++KGEN C+ SG+GKSD+LMLCASYAAQTDLS FF+AWNPGSKAFLYP+DP P YE
Sbjct  1429  DDQINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKAFLYPDDPQPYYE  1488

Query  1487  GGITQSGLDKVKELKLPKPQRDPLAINQLSR  1517
             GGIT SG+++VK LKL  PQ++PL+IN +++
Sbjct  1489  GGITPSGIQRVKSLKLNLPQKNPLSINSVTQ  1519

9) VVMO6_02757 in NC_014965


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1665 bits (6324),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 989/1531 (65%), Positives = 1274/1531 (84%), Gaps = 26/1531 (1%)

Query  1     MKRSLLSLLIASMLVACGSEDQvlapvlpptvepel----------pDIGVDDPIIVSAL  50
             MK  ++SL++ + L++C  E  + + V +     +           PDIGV DPII  ++
Sbjct  1     MKIRIVSLIVLGFLIGCKHESIITPTVPADGSGGNALNPGLVGGYLPDIGVPDPIISLSM  60

Query  51    SLDGHLMLSGSVECNGGPANQFDVPQKEDVVCMVQGRTVATFTTPYVAEQTRSRAVNVEV  110
             +LDG+L + +S+ CN+  A++F+++QK++V C ++GR++ATFT+P+ A++  +R  + EV
Sbjct  61    TLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKN-GRNTDSEV  119

Query  111   LSLAQADEYKASPVRLSNIQTLIKNIGSIQGNTIELDLSSSRDALTFEHYFDHNLDMPVD  170
             LSL  ADEY+ SPVR  N+Q L+KN+++I+G+ I L + S+ DALTFE+Y+ HNLD+P D
Sbjct  120   LSLISADEYRDSPVRQENLQILMKNMATIHGDKISLVFRSTLDALTFENYLRHNLDLPKD  179

Query  171   EFRALITEKVSNDNQVDKQPTTHVPDVPPAVTPGASSDLTSGFVSASAEESLVYKPSEVI  230
             +F   ITEK++NDNQVDKQP+THVP+++P+ TPG+SS+L S FVSA+AEESL Y P++VI
Sbjct  180   QFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTDVI  239

Query  231   LTQAQLLNEQGLPVNGIAYFSAHGRGVTGVDKQGNMIGDGRFEFSWGENISFAIDTFELG  290
              + ++LL+ QG  +NG++YFS + RG+TGVDK G ++ DG FEFSWG+ ISF+IDTFELG
Sbjct  240   PSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFELG  299

Query  291   EVRGNKTAFQLIELAQGNEGKNVEKLVHRYADRTDSKVTLPQQVTEVFALYPNVVNEAIs  350
               R+NKT F + EL+++NEGKN E L+HRYA   DSK+ +P++VT++F+LYPNV+NE IS
Sbjct  300   STRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKLIIPDKVTQIFSLYPNVINEVIS  359

Query  351   lslnsddtlldVGGGQTQLVPGEFEQQFAHGLAADIDQQLAKPSARSNFE--LPVVKGAL  408
             LSL ++D  LD+G+G+TQ+VPGEF +QF  GLAA IDQ ++ P +R +FE  LP  K+A+
Sbjct  360   LSLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQSIS-PISRFKFEDSLPKKKSAI  418

Query  409   DPQASRIQADIQKLWGATHQVQQAGWKKVERFHVFHDSTNFYGSTGNARGQAAVNIANSA  468
             D+++S+IQ  I+KLWGAT+ VQ  GWKKV+RFH+FHDSTNFYGSTG+AR+QAAVNIANSA
Sbjct  419   DSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIANSA  478

Query  469   FPVMMARNDNNYWIDFGQPKAWDAQGLAFITEApssvvpekvsveTATFNLPFMSIGELG  528
             FPV+MARNDNNYWIDFG+PKAWD+++LAFITEAPS+VVP+KVS +T+TFNLPF+S+GE+G
Sbjct  479   FPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGEIG  538

Query  529   EGKVMVMGNARYNSVLVCPNGFSWNGGVNQDGSCKQSSDTDDMANFFANTLRYLTGKSAQ  588
              GK+MV+GNARYNSVLVCPNGFSW G V+ +G+C  SSD DDMANFF+N +RYLTG +++
Sbjct  539   KGKLMVLGNARYNSVLVCPNGFSWGGTVK-NGTCSLSSDRDDMANFFSNVIRYLTGSTSN  597

Query  589   ELTVGTNIPYVYFKRHGQVMGERADFVIDPRLAAKTEQLSDFGHLDPEAMPVVIINGYEY  648
             ++ VGTNIP VYFK  GQ MG +A+F +D+R++ +T+QL+ F +LD +++P++IIN+Y+Y
Sbjct  598   DVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSKQTQQLTSFHDLDVNTIPLIIINAYDY  657

Query  649   LGHAGIGAYDLPMSANINKPKLSQQDVSGLIDYVNRGGNVLMMETIINRANAGEVARLLD  708
              G    ++YD+P+SA++  PKLS+ DV++LIDY+N GG+VLMMETIIN +N +E++RLLD
Sbjct  658   KGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIIN-TNNSEISRLLD  716

Query  709   SAGIAFGMGQSVVPNGNGPSGGYPDRPRNQRQHGIWVLERYAAVQG-ADGKPALPYTIKD  767
             SAGIAFG+G+SVV++GNGPSGG PDRPR+QR+HGIWV+ERYAAV++ + G+ +LPY I+ 
Sbjct  717   SAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVEDESSGQQTLPYVINS  776

Query  768   DGSVEWQYQVEGKPDDKPNLEMARWPELDEQGEPVLDKDGNPIINVAFIDESQHWRKDEE  827
             DGS+EW+Y VE +PDDKP+LE+A W E  E G+ +       I + AFIDESQHW+KD  
Sbjct  777   DGSIEWKYIVENRPDDKPKLEVASWVE-SEAGDKL-------ITHYAFIDESQHWKKDIS  828

Query  828   GHVVVDEHQQPILDQDSLAKAKQRILNAFL-VNGKPAYQECHDSQFHYEVNCLESRPGNG  886
             G ++ +   +P +D+ SL+ AK+++L+AF   +G+ AY EC +S+FHYE+NCLE RPGN+
Sbjct  829   GKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINCLEYRPGNS  888

Query  887   IPTGGGMHVPHYTELKLGEAESQAMVKAANLGTNIEVLYQHERYFRTKGKMGERLSSVDL  946
             IP  GG+ VP+YT++KLGE+E++AMVKAANLGTNI+ LYQHERYFRTKGK G RL+SVDL
Sbjct  889   IPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSGARLNSVDL  948

Query  947   NRIYQNMTVWLWNDLDYRYESSSEDELGFQRFTQFLNCYTNDVAGGNTHCPEEVKSELNR  1006
             NRIYQNM+VWLWNDLDYRY+    DELGF+ FTQ+LNCYT++ AGGNT CPEE+K EL +
Sbjct  949   NRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPEELKDELTQ  1008

Query  1007  LNMVYGDEAGEYAGQMNPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRAFPgeagegagg  1066
             L M+Y++ +G YAGQM+PSYPLNYMEKPLTRLMLGRSFWDLDIKVDVR +PGE    +GG
Sbjct  1009  LGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPGEVTTRSGG  1068

Query  1067  RNVTLDMRNLTTAWFAGNRQPTGQWAVAQQPFTVSVAGEEAPVTITIALADDLTGREKHE  1126
              ++TLDMRN T+AWFAGNRQPTGQWA A+QPF+VSV+GE +PVTITIALADDLTGREKHE
Sbjct  1069  GDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADDLTGREKHE  1128

Query  1127  LGLQRPPRMTKSFVIGGGHATSQQFTVPYGGLIYAQGGNSEQVSLTFTGTVDAPLYKQGK  1186
             LGL+RPPRM+KSFVIGG+ +  Q FTVPYGGLIYAQGGNS+QV LTF+GT+DAPLY +GK
Sbjct  1129  LGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNSQQVKLTFSGTIDAPLYIDGK  1188

Query  1187  WQNPLSSPAPMGEVISDTFIFTAPKANLNAAGYAGGIEQFALELDRFSADLNDFYARDEG  1246
             W+NPL S AP+GEV+SDTFIFTAPKANLNA GY GGIEQFA +LD+FSADLNDFYARDEG
Sbjct  1189  WRNPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADLNDFYARDEG  1248

Query  1247  VEGRLNRQATSPSNPNNRHHFLNDVAISIGAAHSGYPVMNASFNAKSQSLNTAPLNSWLL  1306
              +G  NR+AT  S PNNRHHF+NDVAIS+GAAHSGYPVMN SF + S+SLNT PLNSWLL
Sbjct  1249  ADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLNTMPLNSWLL  1308

Query  1307  WHEVGHNAAEAPFNVDGATEVVNNLLALYMQDQYLGKMTRVEQDIRIAPDFVRMESGHAW  1366
             WHEVGHN+AEAPFNVDGATEVVNNLLALYMQD+  GKM+RVEQDIR A DFV  E GHAW
Sbjct  1309  WHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFDFVNAEHGHAW  1368

Query  1367  GAGGAGERLVMFAQLKEWAESEFDIQQWYGDEVPSYYSSKEGITGWNLFKLMHRLTRNKT  1426
             GAGGAGERLVMFAQLKEWAE+EFDI++WY D +P++Y    GI GWNLFKLMHRL RN  
Sbjct  1369  GAGGAGERLVMFAQLKEWAETEFDINDWYNDKLPGFYIEESGIKGWNLFKLMHRLMRNEN  1428

Query  1427  EDLFKLKGENMCQAPEFGKSDMLMLCASYAAQTDLSAFFQAWNPGSKAFLYPGDPTPRYE  1486
             +D +++KGEN C+ + +GKSD+LMLCASYAAQTDLS FF+AWNPGSKAFLYP+DP P YE
Sbjct  1429  DDQINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKAFLYPDDPQPYYE  1488

Query  1487  GGITQSGLDKVKELKLPKPQRDPLAINQLSR  1517
             GGIT SG+++VK LKL  PQ++PL+IN +++
Sbjct  1489  GGITPSGIQRVKSLKLNLPQKNPLSINSVTQ  1519

10) VPA1376 in NC_004605


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1558 bits (5916),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 919/1528 (61%), Positives = 1225/1528 (81%), Gaps = 44/1528 (2%)

Query  1     MKKTLLSTIVVSLLFGCNYDSYHTDTVVPE------LPPP-----------PEATINVGL  43
             MK  ++S IV+++L+GC+ +S  T TV ++      L P            P++ I++++
Sbjct  1     MKIRIVSLIVLGFLIGCKHESIITPTVPADGSGGNALNPGLVGGYLPDIGVPDPIISLSM  60

Query  44    SLDGYLKFVNSSILCNGEPAEHFTVGPSDHVSCVLKADGTPIATYYSPFDSGTDNQARIT  103
             +LDG LKF +SS+LCN++ A HF ++  D+V C +  +G +IAT+ +PFD+  + +   +
Sbjct  61    TLDGNLKF-DSSLLCNDQDASHFQISQKDNVFCTI--NGRSIATFTAPFDANKNGRNTDS  117

Query  104   LEYLKLTDAEEYKDSSTRVQNIQTLIKTMGTIHGDELDLSLEKTSHRLIFKNYLNNQLDV  163
              E L L  A+EY+DS+ R +N+Q L+K M+TIHGD + L +  T + L F NYL ++LD+
Sbjct  118   -EVLSLISADEYRDSPVRQENLQILMKNMATIHGDKISLVFRSTLDALTFENYLRHNLDL  176

Query  164   EIDTFKKLLQERLSNDSQTDKQPSTHTPEVEPAVTPGASSDLSQAFVSANAEKSLEYKPK  223
               D F   + E+++ND+Q DKQPSTH P++ P+ TPG+SS+L+ +FVSANAE SL Y P 
Sbjct  177   PKDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPT  236

Query  224   ELILTTGYLVDSFGRSVNGIAYFTSKGRGLTGY-KDGRLIGDGSLEFSWGDTINFGIDTF  282
             ++I + G L+DS GR +NG++YF+++ RG+TG  K G ++ DGS+EFSWGD I+F+IDTF
Sbjct  237   DVIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTF  296

Query  283   ELGSTRGNKNTIKLQDLGSGNEGKNIESLVMRFSEENDQSVFVTDKVTEVFSKYPNVINE  342
             ELGSTR+NK  + + +LG +NEGKN E+L+ R++  +D  +++ DKVT++FS YPNVINE
Sbjct  297   ELGSTRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKLIIPDKVTQIFSLYPNVINE  356

Query  343   AISLSLSNEDIQLDLGNGNTEVVKGEFEKQFESGLAEEIDKELGR-QKLAFGEQYRKPKQ  401
              ISLSL+N DI+LD+G+G+T++V GEF KQF+SGLA  ID+ ++   ++ F +    PK+
Sbjct  357   VISLSLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQSISPISRFKFEDSL--PKK  414

Query  402   IKAVDSDAQNVQRDVERLWGATQQAQREGWKPVERFHIFHDSTNFYGSTGSARAQAAVNI  461
               A+DS++ ++Q  +++LWGAT+  Q +GWK V+RFHIFHDSTNFYGSTGSARAQAAVNI
Sbjct  415   KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNI  474

Query  462   SNKAFPVVMARNDKNYWLDFDKPQAWDENGLAYITEAPSKVKPKKVDASNATFNLPFISI  521
             +N AFPV+MARND+NYW+DF+KP+AWD N+LA+ITEAPS V P KV    +TFNLPFIS+
Sbjct  475   ANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFISL  534

Query  522   GDLGKGKVMVMGNARYNSVLVCPNGFSWNGGVNDQGQCTGNTDSDDMANFFNNAFQYLTG  581
             G++GKGK+MV+GNARYNSVLVCPNGFSW G V++ G C+ ++D DDMANFF+N ++YLTG
Sbjct  535   GEIGKGKLMVLGNARYNSVLVCPNGFSWGGTVKN-GTCSLSSDRDDMANFFSNVIRYLTG  593

Query  582   KKAGTFSVATNIPHVYFKRGGQVLGSKASYLIDKRFAQDTQQLDSFSGLDPNDIPLVILN  641
               +    V+TNIP+VYFK +GQ +GSKA++ +D RF+++TQQL SF +LD N IPL+I+N
Sbjct  594   STSNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSKQTQQLTSFHDLDVNTIPLIIIN  653

Query  642   AYSYLGEQGGLGAYDLPMQANLDAPKLTQQDISDLIAYVEDGGSVLMMETIKGQKDSGVV  701
             AY Y G +   ++YD+P+ A++++PKL++ D++DLI Y+++GGSVLMMETI   ++S + 
Sbjct  654   AYDYKGKNIN-SPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIINTNNSEI-  711

Query  702   SRLLDAAGIAFGIGESVARDGNGPNGGYPDRVRSQRQQGIWVLERYAAEDSSNGEGPSLP  761
             SRLLD+AGIAFGIG+SV  DGNGP+GG PDR RSQR++GIWV+ERYAA +  ++   +LP
Sbjct  712   SRLLDSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVEDESSGQQTLP  771

Query  762   YVIKEDGSVEWKYIIENRPDDKPKLEVAKWTEINEQGDSKVQVAFIDEAN----------  811
             YVI+ DGS+EWKYI+ENRPDDKPKLEVA W E +  +    + AFIDE++          
Sbjct  772   YVINSDGSIEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDESQHWKKDISGKI  831

Query  812   FYQDGT---FDNEALTVAKNRILDAFKDNSGKRAYEECTNNEYHYEVNCLEYRPGNKIPI  868
             +Y+ +     DN +L++AKN++LDAFK++SG+RAY EC N+E+HYE+NCLEYRPGN IPI
Sbjct  832   IYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINCLEYRPGNSIPI  891

Query  869   SGGLYVPNYTEMKLGEHEAKAMVKAANIGSNIEALYQHERYFRTKGKQGFRLNSVDMSRM  928
             +GGLYVP YT++KLGE EA+AMVKAAN+G+NI+ALYQHERYFRTKGK G RLNSVD++R+
Sbjct  892   TGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSGARLNSVDLNRI  951

Query  929   YQNLSVWLWNDLRYSYDQEKNDELGFKRFTEFLNCYTDDKAGGNTICPESLKLELQKMDM  988
             YQN+SVWLWNDL Y YD+ ++DELGFK FT++LNCYT ++AGGNT CPE LK EL +++M
Sbjct  952   YQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPEELKDELTQLGM  1011

Query  989   IYAE--GEYAGYMNPSYPLNYMEKPLTRLMLGRSFWDLDVKVDTRQFPGVASSSGSNGGT  1046
             IY E  G YAG M+PSYPLNYMEKPLTRLMLGRSFWDLD+KVD R++PG  ++ ++ GG 
Sbjct  1012  IYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPGEVTTRSG-GGD  1070

Query  1047  ITLDMSNNVTAWFAGSRQATGQWAQAHVPFTVSVSGAKAPVTITVALADDLTAREKHEVG  1106
             ITLDM NN +AWFAG+RQ+TGQWA+AH PF+VSVSG  +PVTIT+ALADDLT+REKHE+G
Sbjct  1071  ITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADDLTGREKHELG  1130

Query  1107  LKRPPRMTKSFIIGGNKATSETITVPYGGLIYAQGGNSESVQLTFTGTLAAPLFIDGSWK  1166
             LKRPPRM+KSF+IGG+ +  +T+TVPYGGLIYAQGGNS+ V+LTF+GT+ APL+IDG W+
Sbjct  1131  LKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNSQQVKLTFSGTIDAPLYIDGKWR  1190

Query  1167  NDLDSPAPVGEVVSKSFIYTGPKANLRAENYPGGIEQFAKDLDQFASDLNDFYARDEGLD  1226
             N L S AP+GEVVS +FI+T+PKANL A+ Y GGIEQFAKDLDQF++DLNDFYARDEG D
Sbjct  1191  NPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADLNDFYARDEGAD  1250

Query  1227  GQANRKVTGDENPNSRHHFVNDVAISIGAAHSGYPVMnssynlnssninTTPLNDWLLWH  1286
             G+ NRK T+   PN+RHHFVNDVAIS+GAAHSGYPVMN S+  +S ++NT PLN WLLWH
Sbjct  1251  GDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLNTMPLNSWLLWH  1310

Query  1287  EVGHNAAEAPFVVEGATEVVNNLLALYMQDLHIGKMTRVEQDIQVAPEFVRTEhghawaa  1346
             EVGHN+AEAPF V+GATEVVNNLLALYMQD H GKM+RVEQDI+ A +FV +EHGHAW+A
Sbjct  1311  EVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFDFVNAEHGHAWGA  1370

Query  1347  ggaaERLVMFAQLKEWAESEFDIRDWYQGELPSYYSEVEGVKGWNLFKLMHRLTRNESDG  1406
             GGA+ERLVMFAQLKEWAE+EFDI DWY++ LP++Y E  G+KGWNLFKLMHRL RNE+D+
Sbjct  1371  GGAGERLVMFAQLKEWAETEFDINDWYNDKLPGFYIEESGIKGWNLFKLMHRLMRNENDD  1430

Query  1407  IFYLKSTNACRWQGLSKSDQLMVCASYAAQTDLSDFFLAWNPGARSFIYPGSSEPSYEGG  1466
              + +K+ N C+  G++KSD LM+CASYAAQTDLS+FF AWNPG+++F+YP+ ++P YEGG
Sbjct  1431  QINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKAFLYPDDPQPYYEGG  1490

Query  1467  VTQKGLDVVRKLGLKKPSLDPEEINTIT  1494
             +T  G++ V+ L L+ P  +P  IN++T
Sbjct  1491  ITPSGIQRVKSLKLNLPQKNPLSINSVT  1518

11) VPBB_A1251 in NC_019971


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1486 bits (5640),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 867/1380 (63%), Positives = 1134/1380 (83%), Gaps = 23/1380 (1%)

Query  1     MGTIHGDELDLSLEKTSHRLIFKNYLNNQLDVEIDTFKKLLQERLSNDSQTDKQPSTHTP  60
             M+TIHGD + L +  T + L F NYL ++LD+  D F   + E+++ND+Q DKQPSTH P
Sbjct  145   MATIHGDKISLVFRSTLDALTFENYLRHNLDLPKDQFLEAITEKIANDNQVDKQPSTHVP  204

Query  61    EVEPAVTPGASSDLSQAFVSANAEKSLEYKPKELILTTGYLVDSFGRSVNGIAYFTSKGR  120
             ++ P+ TPG+SS+L+ +FVSANAE SL Y P ++I + G L+DS GR +NG++YF+++ R
Sbjct  205   NISPSFTPGTSSNLNSPFVSANAEESLSYIPTDVIPSLGRLLDSQGRVINGVSYFSNNTR  264

Query  121   GLTGY-KDGRLIGDGSLEFSWGDTINFGIDTFELGSTRGNKNTIKLQDLGSGNEGKNIES  179
             G+TG  K G ++ DGS+EFSWGD I+F+IDTFELGSTR+NK  + + +LG +NEGKN E+
Sbjct  265   GITGVDKTGAILNDGSFEFSWGDIISFSIDTFELGSTRANKTDFYISELGKDNEGKNAEA  324

Query  180   LVMRFSEENDQSVFVTDKVTEVFSKYPNVINEAISLSLSNEDIQLDLGNGNTEVVKGEFE  239
             L+ R++  +D  +++ DKVT++FS YPNVINE ISLSL+N DI+LD+G+G+T++V GEF 
Sbjct  325   LIHRYASIDDSKLIIPDKVTQIFSLYPNVINEVISLSLPNGDIELDIGDGKTQIVPGEFF  384

Query  240   KQFESGLAEDIDKELGR-QKLAFGEQYREPKQIKAVDSDAQNVQRDVERLWGATQQAQRE  298
             KQF+SGLA  ID+ ++   ++ F +    PK+  A+DS++ ++Q  +++LWGAT+  Q +
Sbjct  385   KQFDSGLAALIDQSISPISRFKFEDSL--PKKKSAIDSESSQIQDIINKLWGATDTVQAN  442

Query  299   GWKPVERFHIFHDSTNFYGSTGSARAQAAVNISNKAFPVVMARNDKNYWIDFDKPQAWDE  358
             GWK V+RFHIFHDSTNFYGSTGSARAQAAVNI+N AFPV+MARND+NYWIDF+KP+AWD 
Sbjct  443   GWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIANSAFPVLMARNDNNYWIDFGKPKAWDS  502

Query  359   NGLAYITEAPSKVKPKKVDASNATFNLPFISIGDLGKGKVMVMGNARYNSVLVCPNGFSW  418
             N+LA+ITEAPS V P KV    +TFNLPFIS+G++GKGK+MV+GNARYNSVLVCPNGFSW
Sbjct  503   NSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGEIGKGKLMVLGNARYNSVLVCPNGFSW  562

Query  419   NGGVNDQGQCTGNTDSDDMANFFNNAFQYLTGKKAGTFSVATNIPHVYFKRGGQVLGSKA  478
              G V++ G C+ ++D DDMANFF+N ++YLTG  +    V+TNIP+VYFK +GQ +GSKA
Sbjct  563   GGTVKN-GTCSLSSDRDDMANFFSNVIRYLTGSTSNDVIVGTNIPEVYFKSSGQTMGSKA  621

Query  479   SYLIDKRFAQDTQQLDSFSGLDPNDIPLVILNAYSYLGEQGGLGAYDLPMQANLDAPKLT  538
             ++ +D RF+++TQQL SF +LD N IPL+I+NAY Y G +   ++YD+P+ A++++PKL+
Sbjct  622   NFELDSRFSKQTQQLTSFHDLDVNTIPLIIINAYDYKGKNIN-SPYDIPLSADVGSPKLS  680

Query  539   QQDISDLIAYVEDGGSVLMMETIKGQKDSGVVSRLLDAAGIAFGIGESVARDGNGPNGGY  598
             + D++DLI Y+++GGSVLMMETI   ++S + SRLLD+AGIAFGIG+SV  DGNGP+GG 
Sbjct  681   RSDVTDLIDYINNGGSVLMMETIINTNNSEI-SRLLDSAGIAFGIGNSVVADGNGPSGGH  739

Query  599   PDRVRSQRQQGIWVLERYAAEDSSNGEGPSLPYVIKEDGSVEWKYIIENRPDDKPKLEVA  658
             PDR RSQR++GIWV+ERYAA +  ++   +LPYVI+ DGS+EWKYI+ENRPDDKPKLEVA
Sbjct  740   PDRPRSQREHGIWVIERYAAVEDESSGQQTLPYVINSDGSIEWKYIVENRPDDKPKLEVA  799

Query  659   KWIEINEQGDSKVQVAFIDEAN----------FYQDGT---FDNEALTVAKNRILDAFKD  705
              W+E +  +    + AFIDE++          +Y+ +     DN +L++AKN++LDAFK+
Sbjct  800   SWVESEAGDKLITHYAFIDESQHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKN  859

Query  706   NSGKRAYEECTNNEYHYEVNCLEYRPGNKIPISGGLYVPNYTEMKLGEHEAKAMVKAANI  765
             +SG+RAY EC N+E+HYE+NCLEYRPGN IPI+GGLYVP YT++KLGE EA+AMVKAAN+
Sbjct  860   SSGQRAYSECKNSEFHYEINCLEYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANL  919

Query  766   GSNIEALYQHERYFRTKGKQGFRLNSVDMSRMYQNLSVWLWNDLRYSYDQEKNDELGFKR  825
             G+NI+ALYQHERYFRTKGK G RLNSVD++R+YQN+SVWLWNDL Y YD+ ++DELGFK 
Sbjct  920   GTNIHALYQHERYFRTKGKSGARLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKV  979

Query  826   FTEFLNCYTDDKAGGNTICPESLKLELQKMDMIYAE--GEYAGYMNPSYPLNYMEKPLTR  883
             FT++LNCYT ++AGGNT CPE LK EL +++MIY E  G YAG M+PSYPLNYMEKPLTR
Sbjct  980   FTQYLNCYTSNNAGGNTTCPEELKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTR  1039

Query  884   LMLGRSFWDLDVKVDTRQFPGVASSSGSNGGTITLDMSNNVTAWFAGSRQATGQWAQAHV  943
             LMLGRSFWDLD+KVD R++PG  ++ ++ GG ITLDM NN +AWFAG+RQ+TGQWA+AH 
Sbjct  1040  LMLGRSFWDLDIKVDVRKYPGEVTTRSG-GGDITLDMRNNTAAWFAGNRQPTGQWAEAHQ  1098

Query  944   PFTVSVSGAKAPVTITVALADDLTAREKHEVGLKRPPRMTKSFIIGGNKATSETITVPYG  1003
             PF+VSVSG  +PVTIT+ALADDLT+REKHE+GLKRPPRM+KSF+IGG+ +  +T+TVPYG
Sbjct  1099  PFSVSVSGETSPVTITIALADDLTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYG  1158

Query  1004  GLIYAQGGNSESVQLTFTGTLAAPLFIDGSWKNDLDSPAPVGEVVSKSFIYTGPKANLRA  1063
             GLIYAQGGNS+ V+LTF+GT+ APL+IDG W+N L S AP+GEVVS +FI+T+PKANL A
Sbjct  1159  GLIYAQGGNSQQVKLTFSGTIDAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNA  1218

Query  1064  ENYPGGIEQFAKDLDQFASDLNDFYARDEGLDGQANRKVTGDENPNSRHHFVNDVAISIG  1123
             + Y GGIEQFAKDLDQF++DLNDFYARDEG DG+ NRK T+   PN+RHHFVNDVAIS+G
Sbjct  1219  DGYLGGIEQFAKDLDQFSADLNDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVG  1278

Query  1124  AAHSGYPVMnssynlnssninTTPLNDWLLWHEVGHNAAEAPFVVEGATEVVNNLLALYM  1183
             AAHSGYPVMN S+  +S ++NT PLN WLLWHEVGHN+AEAPF V+GATEVVNNLLALYM
Sbjct  1279  AAHSGYPVMNDSFITSSRSLNTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYM  1338

Query  1184  QDLHIGKMTRVEQDIQVAPEFVRTEhghawaaggaaERLVMFAQLKEWAESEFDIRDWYQ  1243
             QD H GKM+RVEQDI+ A +FV +EHGHAW+AGGA+ERLVMFAQLKEWAE+EFDI DWY+
Sbjct  1339  QDRHQGKMSRVEQDIRYAFDFVNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYN  1398

Query  1244  GELPSYYSEVEGVKGWNLFKLMHRLTRNESDGIFYLKSTNACRWQGLSKSDQLMVCASYA  1303
             + LP++Y E  G+KGWNLFKLMHRL RNE+D+ + +K+ N C+  G++KSD LM+CASYA
Sbjct  1399  DKLPGFYIEESGIKGWNLFKLMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYA  1458

Query  1304  AQTDLSDFFLAWNPGARSFIYPGSSEPSYEGGVTQKGLDVVRKLGLKKPSLDPEEINTIT  1363
             AQTDLS+FF AWNPG+++F+YP+ ++P YEGG+T  G++ V+ L L+ P  +P  IN++T
Sbjct  1459  AQTDLSEFFKAWNPGSKAFLYPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVT  1518

12) Fbal_1310 in NC_014541


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1388 bits (5267),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 827/1469 (57%), Positives = 1099/1469 (75%), Gaps = 46/1469 (3%)

Query  41    TLTLDGTLRFAEPVRCNGKPAIDFEITVGDSVSCHYKGTILASFTDVQPDPAARTGTTTV  100
             ++TLDG L+F  ++ CN++ A +F+I+  D+V C  +G  +A+FT   P  A + G  T 
Sbjct  59    SMTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTA--PFDANKNGRNTD  116

Query  101   KKTLMLGHSNGFAERPHAATNATALVRSYGVTHGDTITLSL-TALQDLKFKDTFLNQLDL  159
                L L  ++ + + P    N   L+++ +  HGD I+L + ++L+ L F + + ++LDL
Sbjct  117   SEVLSLISADEYRDSPVRQENLQILMKNMATIHGDKISLVFRSTLDALTFENYLRHNLDL  176

Query  160   TPEAFAELLAQQ-ANDSQTDKLPSTHVPDIEAAVNPNASPDLNAGFVAADAESGYQYQPE  218
               + F E ++++ AND+Q DK PSTHVP+I ++  P +S++LN+ FV+A+AE +  Y P 
Sbjct  177   PKDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPT  236

Query  219   QTILASGRLTDRDGKPVAGVTYFSRASRGVTD--------AEGKFEFVWGDTVRFGLDTF  270
             + I + GRL D +G+ + GV+YFS  +RG+T+         +G FEF WGD + F++DTF
Sbjct  237   DVIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTF  296

Query  271   ELGQVRGNQQQVSLTELGEGDVGLNIDALVRRYADDQLDHWQLPERVTEVFAAYPNVINE  330
             ELG  R+N+ +  ++ELG ++ G N +AL++RYA  +     +P++VT++F+ YPNVINE
Sbjct  297   ELGSTRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKLIIPDKVTQIFSLYPNVINE  356

Query  331   IISLSLSSQPRELALGDGQVQWLPAEFAAQFDSGLAADIDQQLCQRDC---EGDAVMARG  387
             +ISLSL++   EL +GDG+ Q +P+EF  QFDSGLAA IDQ +        E+     ++
Sbjct  357   VISLSLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKKKS  416

Query  388   AVD-DSGQILADIQKLWGSSADAQQQGWKPVSRFHVFHDSTNFYGSTGHARGQAAVNIAN  446
             A+D +S+QI   I+KLWG++   Q +GWK V RFH+FHDSTNFYGSTG AR+QAAVNIAN
Sbjct  417   AIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIAN  476

Query  447   SAFPVMMARNDNNYWIPFGAPKAWDQHGLAYITEAPSTVVPERVGGETATFNLPFVSIGE  506
             SAFPV+MARNDNNYWI FG PKAWD ++LA+ITEAPSTVVP++V+ +T+TFNLPF+S+GE
Sbjct  477   SAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGE  536

Query  507   IGQGKVMVMGNARYHSILVCPNGYSWQGGVDADGQCRQSGDSDDMKHFFHNALRYLTGQS  566
             IG+GK+MV+GNARY+S+LVCPNG+SW G V  +G C  S+D DDM +FF N +RYLTG +
Sbjct  537   IGKGKLMVLGNARYNSVLVCPNGFSWGGTVK-NGTCSLSSDRDDMANFFSNVIRYLTGST  595

Query  567   GG-FTVGTNVAYAYFKRGGQVAGEKVPFALAPAFGVTTEQLQRFDDLDPNQYPLLILNGF  625
             +    VGTN++  YFK +GQ  G K  F L + F+  T+QL  F+DLD N  PL+I+N++
Sbjct  596   SNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSKQTQQLTSFHDLDVNTIPLIIINAY  655

Query  626   EYLIDPNGNHYDLPLRADLERPKLSQDDATALIDYVSRGGSILVMETVLEGEKAGALARL  685
             +Y      + YD+PL AD+  PKLS+ D T LIDY++ GGS+L+MET+++ +++  ++RL
Sbjct  656   DYKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIINTNNS-EISRL  714

Query  686   LDSAGIAFGMNGSVVADGNGPSAGYPDRVRNQRGHGIWVLERYAAVEGDNG--PTLPYRI  743
             LDSAGIAFG+  SVVADGNGPS+G PDR R+QR HGIWV+ERYAAVE++++   TLPY I
Sbjct  715   LDSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVEDESSGQQTLPYVI  774

Query  744   E-NGQVVWLYQEQNKPDDKPKLEVAKWTETGADGQLVTHVAFIDER--------------  788
             + +G + W Y  +N+PDDKPKLEVA W E+ A+++L+TH AFIDE               
Sbjct  775   NSDGSIEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDESQHWKKDISGKIIYN  834

Query  789   -------ESQDVAADKARILAAFTREDGSPAYQECRDPNYHYEVNCLEYRPGNEIDVTGG  841
                    ++  ++  K ++L AF    G  AY EC+++++HYE+NCLEYRPGN I +TGG
Sbjct  835   VAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINCLEYRPGNSIPITGG  894

Query  842   MFVPRYTELDLGDAQARAMVKAADLGTSIERLYQHERYFRSEGKQGQRLSSVDLNRLYQN  901
             ++VPRYT++ LG+++A AMVKAA+LGT+I+ LYQHERYFR+ GK G RL+SVDLNR+YQN
Sbjct  895   LYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSGARLNSVDLNRIYQN  954

Query  902   LSVWLWNdldyryddtlddELGFERFTQFLNCYSDDRAGGGTRCPAELRAELVAQGMVWG  961
             +SVWLWNDLDYRYDD   DELGF  FTQ+LNCY+ + AGG T CP EL+ EL   GM+ +
Sbjct  955   MSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPEELKDELTQLGMIYD  1014

Query  962   DDAGEYAGQLNPDYPLNYMEKPLTRLMLGRSFWDLDIVVDVRRFPGEAQGSEGGTVVALE  1021
             + +G YAGQ++P YPLNYMEKPLTRLMLGRSFWDLDI VDVR++PGE     GG  ++L+
Sbjct  1015  EKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPGEVTTRSGGGDITLD  1074

Query  1022  PNATTTAWYAGNRQPTGQWAVAHQPFTVAVSGTDAPVTVTIALADDLTGREKHELGLRRP  1081
                 T+AW+AGNRQPTGQWA AHQPF+V+VSG  +PVT+TIALADDLTGREKHELGL+RP
Sbjct  1075  MRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADDLTGREKHELGLKRP  1134

Query  1082  PRMQQSFTLNAGELGSSHTLTVPYGGLIYVQGRAGESGQVSLSGTVDAPLYQLGKGWVNP  1141
             PRM +SF + +G+    +T+TVPYGGLIY QG  ++  ++++SGT+DAPLY  GK W NP
Sbjct  1135  PRMSKSFVI-GGDSPKMQTFTVPYGGLIYAQGGNSQQVKLTFSGTIDAPLYIDGK-WRNP  1192

Query  1142  QNAPAPIGEVVSHSFVYTAPKANLAASNYGGSPQTFAEQLDQFAADLNDFYARDEGAEGQ  1201
               + APIGEVVS++F++TAPKANL A  Y G+ + FA +LDQF+ADLNDFYARDEGA+G+
Sbjct  1193  LLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADLNDFYARDEGADGD  1252

Query  1202  ANRMATDPARPANRHHFVNDVAISIGAAHSGYPVMNSSFNVDSNEIGLAPLNSWLLWHEV  1261
              NR ATD + P NRHHFVNDVAIS+GAAHSGYPVMN SF   S  +   PLNSWLLWHEV
Sbjct  1253  KNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLNTMPLNSWLLWHEV  1312

Query  1262  GHNAAEAPFNVAGATEVVNNLLALYMQDKHLGKMARVEQDIRIAPDFVNAEHRRAWAVGG  1321
             GHN+AEAPFNV GATEVVNNLLALYMQD+H GKM+RVEQDIR A DFVNAEH +AW+ GG
Sbjct  1313  GHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFDFVNAEHGHAWGAGG  1372

Query  1322  AGERLVMFAQLKEWAETEFDVRHWYGDGELPAFYRTEPGLAGWNLFKLMHRLSRNAVDPA  1381
             AGERLVMFAQLKEWAETEFD+ +WY D  LP+FY  E+G+ GWNLFKLMHRL RN  D  
Sbjct  1373  AGERLVMFAQLKEWAETEFDINDWYND-KLPGFYIEESGIKGWNLFKLMHRLMRNENDDQ  1431

Query  1382  MLLPGENLCYGQDLGQSDQLMLCASYAAQTDLSAFFDAWNPGSQAMIYPGDSTPQIEGGI  1441
             + + GEN C   ++G+SD LMLCASYAAQTDLS FF AWNPGS+A +YP+D+ P  EGGI
Sbjct  1432  INMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKAFLYPDDPQPYYEGGI  1491

Query  1442  SPVGLNRVAQLNLAKPERDPLRIDRISVH  1470
             +P G++RV  L+L  P+++PL I+ ++ H
Sbjct  1492  TPSGIQRVKSLKLNLPQKNPLSINSVTQH  1520

13) Shal_3494 in NC_010334


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1368 bits (5192),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 856/1534 (56%), Positives = 1150/1534 (75%), Gaps = 76/1534 (4%)

Query  16    GCGDDEPVAPSIPL-----IPLEPS--TPVVPSIPLEPSTPIKLEISVSLDGTLLLGEPI  68
             GC ++  ++P++P       +L+P+     +P I +  + PI + +S++LDG L ++ ++
Sbjct  16    GCKHESIITPTVPADGSGGNALNPGLVGGYLPDIGV--PDPI-ISLSMTLDGNLKFDSSL  72

Query  69    RCNDQKPNGFEIEIGDTVSCLYNNMPLLTFSDVRADIARAAAPTERKQLLLIDADEFIEH  128
              CNDQ ++ F+I   D V C  N  ++ TF+    D  + +  T+   L LI ADE+ + 
Sbjct  73    LCNDQDASHFQISQKDNVFCTINGRSIATFT-APFDANKNGRNTDSEVLSLISADEYRDS  131

Query  129   PENASNAQTLIKTMGVVRGGQIDIEL-STLQALQFENNYL-NNLSMAEEDF-KNLLEQQA  185
             P    N Q L+K M+ ++G++I + + STL+AL FEN YL +NL ++ ++F   + E+ A
Sbjct  132   PVRQENLQILMKNMATIHGDKISLVFRSTLDALTFEN-YLRHNLDLPKDQFLEAITEKIA  190

Query  186   NDAQADKLPSTHLPDIKPEVSTGTSTDLNAHFVAADAEAAYQYKPEQNILSTAILTDSQG  245
             ND Q DK PSTH+P+I P  + GTS++LN+ FV+A+AE +  Y P + I S + L DSQG
Sbjct  191   NDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTDVIPSLGRLLDSQG  250

Query  246   KPVAGITYFSRSSRGITDLD--------GSFQFSWGDSVSFGIDTFELGEVRGNQKSYTL  297
             + + G++YFS ++RGIT++D        GSF+FSWGD +SF+IDTFELG  R+N+  + +
Sbjct  251   RVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFELGSTRANKTDFYI  310

Query  298   SQLGEGNNGLNAEALVLRYATSQGQAWQLPARVAEVFARYPNVINEIISLSLSSQEKVLD  357
             S+LG +N+G NAEAL+ RYA+ ++    +P +V+++F+ YPNVINE+ISLSL++ +  LD
Sbjct  311   SELGKDNEGKNAEALIHRYASIDDSKLIIPDKVTQIFSLYPNVINEVISLSLPNGDIELD  370

Query  358   TGNGE-QIIAAKFSKQFELGLARDIDSVLCDINCQQTAKARELLPEVQSEGADIVRALNN  416
              G+G  QI+++ F KQF+ GLA  ID  +  I+     K  + LP          +  + 
Sbjct  371   IGDGKTQIVPGEFFKQFDSGLAALIDQSISPIS---RFKFEDSLP----------KKKSA  417

Query  417   VTDDSGQILADIQRLWGTTS---DAGWNKVSAFHVFHDSTNFYGSTGNARGQATVNIANS  473
             +  +S+QI   I++LWG+T      GW+KV  FH+FHDSTNFYGSTG+AR+QA+VNIANS
Sbjct  418   IDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIANS  477

Query  474   AFPVMMARNDNNYWIPFGANKAWDKDTLAYITEAPSTVVPDKVSGETATFNLPFISIGEI  533
             AFPV+MARNDNNYWI FG  KAWD ++LA+ITEAPSTVVPDKVS +T+TFNLPFIS+GEI
Sbjct  478   AFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGEI  537

Query  534   GLGKIMVMGNARYNSVLVCPNGYSWNGGIDDKSQCRVASDSDDMKHFFQNSLKYLTNGKS  593
             G GK+MV+GNARYNSVLVCPNG+SW G + + + C ++SD DDM +FF N ++YLT + S
Sbjct  538   GKGKLMVLGNARYNSVLVCPNGFSWGGTVKN-GTCSLSSDRDDMANFFSNVIRYLTGSTS  596

Query  594   G-YSVGTNMPYVYFKRGGQVTGEQEPFIIDPVFGVTTEQVVSFAGIDPQTMPLLILNGFE  652
                 VGTN+P VYFK +GQ  G +  F +D+ F+  T+Q+ SF ++D +T+PL+I+N+++
Sbjct  597   NDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSKQTQQLTSFHDLDVNTIPLIIINAYD  656

Query  653   YTINTSGSHYTLPMQADTTQPKLTQDDVTALIDYVNNGGNIMIMETLAGTNNTGALSRLL  712
             Y  +   S Y +P+ AD   PKL++ DVT LIDY+NNGG++++MET+  TNN+  +SRLL
Sbjct  657   YKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIINTNNS-EISRLL  715

Query  713   DSAGIAFGMGGSVVANGNGPSGGYADRVRNQRGDGIWIIERYAAVEGED-GTPTSPYIIN  771
             DSAGIAFG+G SVVA+GNGPSGG +DR R+QR +GIW+IERYAAVE+E  G  T PY+IN
Sbjct  716   DSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVEDESSGQQTLPYVIN  775

Query  772   QADGSVDWLYKQQSKPDDKPSLSVAKWVETDEDGVETTHTAFIDESQ-------------  818
              +DGS++W Y  +++PDDKP L VA WVE++ ++   TH AFIDESQ             
Sbjct  776   -SDGSIEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDESQHWKKDISGKIIYN  834

Query  819   --------TDDLNAAKALILSAFTKSDGSPAYQECTNPNFHYEINCLEYRPGNNIPVTGG  870
                        L+ AK  +L AF +S G  AY EC N++FHYEINCLEYRPGN+IP+TGG
Sbjct  835   VAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINCLEYRPGNSIPITGG  894

Query  871   MFVPRYTQLELGDAQARAMVKAADLGTNIERLYQHELYFRSRAQQGVRLSNVDLNRTYQN  930
             ++VPRYT++ LG+++A AMVKAA+LGTNI+ LYQHE YFR++++ G RL++VDLNR YQN
Sbjct  895   LYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSGARLNSVDLNRIYQN  954

Query  931   MTVWLWNNLDYRYESGLDDELGFERFTQFLNCYSDNRAQGGTHCPVElqqqmlslqmilg  990
             M+VWLWN+LDYRY+    DELGF  FTQ+LNCY+ N A G T CP EL++++  L MI +
Sbjct  955   MSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPEELKDELTQLGMIYD  1014

Query  991   qESGEYKGYMNPSYPLNYMEKPLTRLMLGRSFWDLDIKVDPRLFPGEAMGSQGGGQVTFD  1050
             + SG Y G M+PSYPLNYMEKPLTRLMLGRSFWDLDIKVD R +PGE     GGG++T+D
Sbjct  1015  EKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPGEVTTRSGGGDITLD  1074

Query  1051  LSHNTAAWFAGNRQPTGQWAVAQQSFTVSVNGSADPVTITVALADDLTGREKHELGLKRP  1110
             + +NTAAWFAGNRQPTGQWA A+Q+F+VSV+G + PVTIT+ALADDLTGREKHELGLKRP
Sbjct  1075  MRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADDLTGREKHELGLKRP  1134

Query  1111  PRMTQSFTLNSGDIGSSYSLTSPYGGLIYVQGQGSQEGHNVTLNFTGSVDAPLYQYDGKG  1170
             PRM++SF + +GD     ++T PYGGLIY QG  SQ+   V L F+G++DAPLY     +
Sbjct  1135  PRMSKSFVI-GGDSPKMQTFTVPYGGLIYAQGGNSQQ---VKLTFSGTIDAPLY----ID  1186

Query  1171  GQWLNPLDSPAPIGEVISQSFVYTaakanlnaanynGSPEQFAKELDTFAEDMNNFYSRD  1230
             G+W NPL S APIGEV+S++F++TA+KANLNA  Y G+ EQFAK+LD F+ D+N+FY+RD
Sbjct  1187  GKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADLNDFYARD  1246

Query  1231  EALQGNLNRKATDSSIPTNRHHFVNDIAISIGAAHSGYPVMNASFNAESHNLALTPLNSW  1290
             E+ +G+ NRKATD S+P NRHHFVND+AIS+GAAHSGYPVMN SF + S++L   PLNSW
Sbjct  1247  EGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLNTMPLNSW  1306

Query  1291  LLWHEVGHNAAEAPFNVDGATEVVNNLLALYMQDKHLGKMSRVEQDIRIAPDFVASENGH  1350
             LLWHEVGHN+AEAPFNVDGATEVVNNLLALYMQD+H GKMSRVEQDIR A DFV +E+GH
Sbjct  1307  LLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFDFVNAEHGH  1366

Query  1351  AWAAGGAGERLVMFAQLKEWAETEFNIDNWYSEGVLPAYYDSATGLQGWNLFKLMHRLTR  1410
             AW+AGGAGERLVMFAQLKEWAETEF+I++WY++  LP++Y   +G++GWNLFKLMHRL R
Sbjct  1367  AWGAGGAGERLVMFAQLKEWAETEFDINDWYNDK-LPGFYIEESGIKGWNLFKLMHRLMR  1425

Query  1411  NIDDKQFVLKGDNLCHRQEGIGKSDQLLLCASYATQMDLSDFFRAWNPGSKAFIYPGDLT  1470
             N +D Q+ +KG+N C +  GIGKSD L+LCASYA+Q DLS+FF+AWNPGSKAF+YP+D  
Sbjct  1426  NENDDQINMKGENQC-KISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKAFLYPDDPQ  1484

Query  1471  PQYEGGISAAGLAKVAALNLPKPTRDPLQIDRIT  1504
             P YEGGI+++G+ +V +L+L  P ++PL I+ +T
Sbjct  1485  PYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVT  1518

14) LY180_15365 in NC_022364


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1181 bits (4479),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 720/1484 (49%), Positives = 1050/1484 (71%), Gaps = 85/1484 (5%)

Query  50    LTLGGSLRVTGDITCNDESSDGFTFTPGDKVTCVAGNNTTIATFDTQSEAARSLRAVEKV  109
             +TL+G+L+  + + CND+ +  F ++  D+V C   N  +IATF +  +A ++ R  +  
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTI-NGRSIATFTAPFDANKNGRNTDSE  118

Query  110   SFSLEDAQELAGSDNKKSNALSLVTSMNSCPANTEQVCLEFSSVIESKRFDSLYKQ-IDL  168
              +SL  A+E  +S  ++ N   L+ +M +   + +++ L F S +++  F++  ++ +DL
Sbjct  119   VLSLISADEYRDSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDL  176

Query  169   APEEFKKLVNEEVENNAATDKAPSTHTSPVVPATTPGTKPDLNASFVSANAEQFYQYQPT  228
             + ++F   + E + N+   DK PSTH + + P+ TPGT ++LN++FVSANAE+   Y PT
Sbjct  177   PKDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPT  236

Query  229   EIILSEGRLVDSQGDGVVGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTF  280
             ++I S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ ISF+IDTF
Sbjct  237   DVIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTF  296

Query  281   ELGSVRGNKSTIALTELGDEVRGANIDQLIHRYSKAGQNHTRVVPDEVRKVFAEYPNVIN  340
             ELGS R+NK+ + ++ELG +  G N + LIHRY+  +++   ++PD V ++F+ YPNVIN
Sbjct  297   ELGSTRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKL-IIPDKVTQIFSLYPNVIN  355

Query  341   EIINLSLSNGAT---LGEGEQVVNLPNEFIEQFKTGQAKEIDTAICA----KTDGCNEAR  393
             E+I+LSL+NG     +G+G   + +P EF+ QF +G A  ID +I +    K ++    +
Sbjct  356   EVISLSLPNGDIELDIGDGKTQI-VPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKK  414

Query  394   WFSLTTRNVNDGQIQGVINKLWGVDTNY-----KSVSKFHVFHDSTNFYGSTGNARGQAV  448
                 ++ + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA 
Sbjct  415   ---KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAA  471

Query  449   VNISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVRPENVTRETATFNLPF  508
             VNI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ +T+TFNLPF
Sbjct  472   VNIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPF  531

Query  509   ISLGQVGDGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENVLRY  568
             ISLG++G GKLMV+GN++YNS+L CPNG+SW G V K+G C+L+SD DDM NF  NV+RY
Sbjct  532   ISLGEIGKGKLMVLGNARYNSVLVCPNGFSWGGTV-KNGTCSLSSDRDDMANFFSNVIRY  590

Query  569   LSNDRWLPDAKSSMTVGTNLDTVYFKKHGQVLGNSAPFAFHKDFTGITVKPMTSYGNLNP  628
             L+       + + + VGTN+  VYFK  GQ +G+ A F ++  F+  T + +TS+ +L+ 
Sbjct  591   LTGS-----TSNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSKQT-QQLTSFHDLDV  644

Query  629   DEVPLLILNGFEYVTQWGSDPYSIPLRADTSKPKLTQQDVTDLIAYMNKGGSVLIMENVM  688
             + +PL+I+N+++Y  +  + PY IPL AD + PKL++ DVTDLI Y+N+GGSVL+ME ++
Sbjct  645   NTIPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETII  704

Query  689   SNLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQRRSTPIWVYERYPAV  745
             +     + S + RLLD+AG++ ++ +SVV ++   + G PDR R +R   IWV ERY+AV
Sbjct  705   NT----NNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAV  760

Query  746   DGKP------PYTIDDTTKEVIWKYQQENKPDDKPKLEVASW-QEEVEGKQVTQFAFIDE  798
             ++ +      PY I+     + WKY  EN+PDDKPKLEVASW + E  +K +T++AFIDE
Sbjct  761   EDESSGQQTLPYVINSDGS-IEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDE  819

Query  799   ADH--------------KTPE----SLAAAKQRILDAF------PGLEVCKDSDYHYEVN  834
             ++H                PE    SL+ AK+++LDAF       +   CK+S++HYE+N
Sbjct  820   SQHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEIN  879

Query  835   CLEYRPGTGVPVTGGMYVPQYTQLDLGADTAKAMLQAADLGTNIQRLYQHELYFRTNGRQ  894
             CLEYRPG ++P+TGG+YVP+YT++ LG   A+AM++AA+LGTNI+ LYQHE YFRT+G+ 
Sbjct  880   CLEYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKS  939

Query  895   GERLNSVDLERLYQNMSVWLWNETKYRYEEGKEDELGFKTFTEFLNCYTNNAYVG-TQCS  953
             G RLNSVDL+R+YQNMSVWLWN+  YRY++ + DELGFK FT++LNCYT+N   G T C+
Sbjct  940   GARLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCP  999

Query  954   AELKKSLIDNKMIYGEESSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYP  1012
              ELK  L +  MIY+E S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IKVDV KYP
Sbjct  1000  EELKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYP  1059

Query  1013  GAVSEEGQNVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIKSNANV-PVTVTVALAD  1071
             G V+  +     T+ + +N + WFAGN Q+TG WA A++  ++  +++  PVT+T+ALAD
Sbjct  1060  GEVTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALAD  1119

Query  1072  DLTGREKHEVALNRPPRVTKTYSL--DASGTVKFKVPYGGLIYIKGDSKDNESASFTFTG  1129
             DLTGREKHE++L+RPPR++K++ +  D++    F VPYGGLIY +G+  +++   +TF+G
Sbjct  1120  DLTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGG--NSQQVKLTFSG  1177

Query  1130  VVKAPFYKDGAWKNDLNSPAPLGELESDAFVYTAPKKNLNASNYTGGLKQFANDLDTFAS  1189
              + AP+Y DG W+N L S AP+GE+ SD+F++TAPK NLNA  Y GG+ QFA+DLD F++
Sbjct  1178  TIDAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSA  1237

Query  1190  SMNDFYGRNE--EDGKHRMFTYKNLTGHKHRFANDVQISIGDAHSGYPVMNSSFstnstt  1247
              +NDFY+R+E  +++K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +
Sbjct  1238  DLNDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRS  1297

Query  1248  lpttplnDWLIWHEVGHNAAETPLTVPGATEVANNVLALYMQDRYLGKMNRVADDITVAP  1307
             L T PLN WL+WHEVGHN+AE+P+ V GATEV NN+LALYMQDR  GKM+RV +DI  A 
Sbjct  1298  LNTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAF  1357

Query  1308  EYLEESNGQAWARGGAGDRLLMYAQLKEWAEKNFDIKKWYPEGELPKFFSDREGMKGWNL  1367
             ++++  +G+AW+ GGAG+RL+M+AQLKEWAE +FDI+ WY +  LP F+ +  G+KGWNL
Sbjct  1358  DFVNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYND-KLPGFYIEESGIKGWNL  1416

Query  1368  FQLMHRKARGDDVGDKTFGGKNYCAESNGNAADTLMLCASWVAQTDLSEFFKKWNPGANA  1427
             F+LMHR  R ++ ++    G N C  S    +D LMLCAS  AQTDLSEFFK WNPG++A
Sbjct  1417  FKLMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKA  1476

Query  1428  YQLPGASEMSFEGGVSQSAYNTLASLKLPKPEQGPETINKVTEH  1471
             +  P+ ++  +EGG++ S+ + + SLKL  P++ P +IN VT+H
Sbjct  1477  FLYPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQH  1520

15) yghJ in NC_017660


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1180 bits (4475),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 720/1484 (49%), Positives = 1050/1484 (71%), Gaps = 85/1484 (5%)

Query  94    LTLGGSLRVTGDITCNDESSDGFTFTPGDKVTCVAGNNTTIATFDTQSEAARSLRAVEKV  153
             +TL+G+L+  + + CND+ +  F ++  D+V C   N  +IATF +  +A ++ R  +  
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTI-NGRSIATFTAPFDANKNGRNTDSE  118

Query  154   SFSLEDAQELAGSDNKKSNALSLVTSMNSCPANTEQVCLEFSSVIESKRFDSLYKQ-IDL  212
              +SL  A+E  +S  ++ N   L+ +M +   + +++ L F S +++  F++  ++ +DL
Sbjct  119   VLSLISADEYRDSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDL  176

Query  213   APEEFKKLVNEEVENNAATDKAPSTHTSPVVPATTPGTKPDLNASFVSANAEQFYQYQPT  272
             + ++F   + E + N+   DK PSTH + + P+ TPGT ++LN++FVSANAE+   Y PT
Sbjct  177   PKDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPT  236

Query  273   EIILSEGRLVDSQGDGVVGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTF  324
             ++I S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ ISF+IDTF
Sbjct  237   DVIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTF  296

Query  325   ELGSVRGNKSTIALTELGDEVRGANIDQLIHRYSKAGQNHTRVVPDEVRKVFAEYPNVIN  384
             ELGS R+NK+ + ++ELG +  G N + LIHRY+  +++   ++PD V ++F+ YPNVIN
Sbjct  297   ELGSTRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKL-IIPDKVTQIFSLYPNVIN  355

Query  385   EIINLSLSNGAT---LGEGEQVVNLPNEFIEQFKTGQAKEIDTAICA----KTDGCNEAR  437
             E+I+LSL+NG     +G+G   + +P EF+ QF +G A  ID +I +    K ++    +
Sbjct  356   EVISLSLPNGDIELDIGDGKTQI-VPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKK  414

Query  438   WFSLTTRNVNDGQIQGVINKLWGVDTNY-----KSVSKFHVFHDSTNFYGSTGNARGQAV  492
                 ++ + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA 
Sbjct  415   ---KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAA  471

Query  493   VNISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVRPENVTRETATFNLPF  552
             VNI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ +T+TFNLPF
Sbjct  472   VNIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPF  531

Query  553   ISLGQVGDGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENVLRY  612
             ISLG++G GKLMV+GN++YNS+L CPNG+SW G V K+G C+L+SD DDM NF  NV+RY
Sbjct  532   ISLGEIGKGKLMVLGNARYNSVLVCPNGFSWGGTV-KNGTCSLSSDRDDMANFFSNVIRY  590

Query  613   LSNDRWLPDAKSSMTVGTNLDTVYFKKHGQVLGNSAPFAFHKDFTGITVKPMTSYGNLNP  672
             L+       + + + VGTN+  VYFK  GQ +G+ A F ++  F+  T + +TS+ +L+ 
Sbjct  591   LTGS-----TSNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSKQT-QQLTSFHDLDV  644

Query  673   DEVPLLILNGFEYVTQWGSDPYSIPLRADTSKPKLTQQDVTDLIAYMNKGGSVLIMENVM  732
             + +PL+I+N+++Y  +  + PY IPL AD + PKL++ DVTDLI Y+N+GGSVL+ME ++
Sbjct  645   NTIPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETII  704

Query  733   SNLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQRRSTPIWVYERYPAV  789
             +     + S + RLLD+AG++ ++ +SVV ++   + G PDR R +R   IWV ERY+AV
Sbjct  705   NT----NNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAV  760

Query  790   DGKP------PYTIDDTTKEVIWKYQQENKPDDKPKLEVASW-QEEVEGKQVTQFAFIDE  842
             ++ +      PY I+     + WKY  EN+PDDKPKLEVASW + E  +K +T++AFIDE
Sbjct  761   EDESSGQQTLPYVINSDGS-IEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDE  819

Query  843   ADH--------------KTPE----SLAAAKQRILDAF------PGLEVCKDSDYHYEVN  878
             ++H                PE    SL+ AK+++LDAF       +   CK+S++HYE+N
Sbjct  820   SQHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEIN  879

Query  879   CLEYRPGTGVPVTGGMYVPQYTQLDLGADTAKAMLQAADLGTNIQRLYQHELYFRTNGRQ  938
             CLEYRPG ++P+TGG+YVP+YT++ LG   A+AM++AA+LGTNI+ LYQHE YFRT+G+ 
Sbjct  880   CLEYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKS  939

Query  939   GERLNSVDLERLYQNMSVWLWNETKYRYEEGKEDELGFKTFTEFLNCYTNNAYVG-TQCS  997
             G RLNSVDL+R+YQNMSVWLWN+  YRY++ + DELGFK FT++LNCYT+N   G T C+
Sbjct  940   GARLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCP  999

Query  998   AELKKSLIDNKMIYGEESSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYP  1056
              ELK  L +  MIY+E S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IKVDV KYP
Sbjct  1000  EELKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYP  1059

Query  1057  GAVSEEGQNVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIKSNANV-PVTVTVALAD  1115
             G V+  +     T+ + +N + WFAGN Q+TG WA A++  ++  +++  PVT+T+ALAD
Sbjct  1060  GEVTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALAD  1119

Query  1116  DLTGREKHEVALNRPPRVTKTYSL--DASGTVKFKVPYGGLIYIKGDSKDNESASFTFTG  1173
             DLTGREKHE++L+RPPR++K++ +  D++    F VPYGGLIY +G+  +++   +TF+G
Sbjct  1120  DLTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGG--NSQQVKLTFSG  1177

Query  1174  VVKAPFYKDGAWKNDLNSPAPLGELESDAFVYTAPKKNLNASNYTGGLKQFANDLDTFAS  1233
              + AP+Y DG W+N L S AP+GE+ SD+F++TAPK NLNA  Y GG+ QFA+DLD F++
Sbjct  1178  TIDAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSA  1237

Query  1234  SMNDFYGRNE--EDGKHRMFTYKNLTGHKHRFANDVQISIGDAHSGYPVMNSSFstnstt  1291
              +NDFY+R+E  +++K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +
Sbjct  1238  DLNDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRS  1297

Query  1292  lpttplnDWLIWHEVGHNAAETPLTVPGATEVANNVLALYMQDRYLGKMNRVADDITVAP  1351
             L T PLN WL+WHEVGHN+AE+P+ V GATEV NN+LALYMQDR  GKM+RV +DI  A 
Sbjct  1298  LNTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAF  1357

Query  1352  EYLEESNGQAWARGGAGDRLLMYAQLKEWAEKNFDIKKWYPEGELPKFFSDREGMKGWNL  1411
             ++++  +G+AW+ GGAG+RL+M+AQLKEWAE +FDI+ WY +  LP F+ +  G+KGWNL
Sbjct  1358  DFVNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYND-KLPGFYIEESGIKGWNL  1416

Query  1412  FQLMHRKARGDDVGDKTFGGKNYCAESNGNAADTLMLCASWVAQTDLSEFFKKWNPGANA  1471
             F+LMHR  R ++ ++    G N C  S    +D LMLCAS  AQTDLSEFFK WNPG++A
Sbjct  1417  FKLMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKA  1476

Query  1472  YQLPGASEMSFEGGVSQSAYNTLASLKLPKPEQGPETINKVTEH  1515
             +  P+ ++  +EGG++ S+ + + SLKL  P++ P +IN VT+H
Sbjct  1477  FLYPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQH  1520

16) EKO11_0748 in NC_016902


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1180 bits (4475),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 720/1484 (49%), Positives = 1050/1484 (71%), Gaps = 85/1484 (5%)

Query  94    LTLGGSLRVTGDITCNDESSDGFTFTPGDKVTCVAGNNTTIATFDTQSEAARSLRAVEKV  153
             +TL+G+L+  + + CND+ +  F ++  D+V C   N  +IATF +  +A ++ R  +  
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTI-NGRSIATFTAPFDANKNGRNTDSE  118

Query  154   SFSLEDAQELAGSDNKKSNALSLVTSMNSCPANTEQVCLEFSSVIESKRFDSLYKQ-IDL  212
              +SL  A+E  +S  ++ N   L+ +M +   + +++ L F S +++  F++  ++ +DL
Sbjct  119   VLSLISADEYRDSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDL  176

Query  213   APEEFKKLVNEEVENNAATDKAPSTHTSPVVPATTPGTKPDLNASFVSANAEQFYQYQPT  272
             + ++F   + E + N+   DK PSTH + + P+ TPGT ++LN++FVSANAE+   Y PT
Sbjct  177   PKDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPT  236

Query  273   EIILSEGRLVDSQGDGVVGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTF  324
             ++I S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ ISF+IDTF
Sbjct  237   DVIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTF  296

Query  325   ELGSVRGNKSTIALTELGDEVRGANIDQLIHRYSKAGQNHTRVVPDEVRKVFAEYPNVIN  384
             ELGS R+NK+ + ++ELG +  G N + LIHRY+  +++   ++PD V ++F+ YPNVIN
Sbjct  297   ELGSTRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKL-IIPDKVTQIFSLYPNVIN  355

Query  385   EIINLSLSNGAT---LGEGEQVVNLPNEFIEQFKTGQAKEIDTAICA----KTDGCNEAR  437
             E+I+LSL+NG     +G+G   + +P EF+ QF +G A  ID +I +    K ++    +
Sbjct  356   EVISLSLPNGDIELDIGDGKTQI-VPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKK  414

Query  438   WFSLTTRNVNDGQIQGVINKLWGVDTNY-----KSVSKFHVFHDSTNFYGSTGNARGQAV  492
                 ++ + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA 
Sbjct  415   ---KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAA  471

Query  493   VNISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVRPENVTRETATFNLPF  552
             VNI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ +T+TFNLPF
Sbjct  472   VNIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPF  531

Query  553   ISLGQVGDGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENVLRY  612
             ISLG++G GKLMV+GN++YNS+L CPNG+SW G V K+G C+L+SD DDM NF  NV+RY
Sbjct  532   ISLGEIGKGKLMVLGNARYNSVLVCPNGFSWGGTV-KNGTCSLSSDRDDMANFFSNVIRY  590

Query  613   LSNDRWLPDAKSSMTVGTNLDTVYFKKHGQVLGNSAPFAFHKDFTGITVKPMTSYGNLNP  672
             L+       + + + VGTN+  VYFK  GQ +G+ A F ++  F+  T + +TS+ +L+ 
Sbjct  591   LTGS-----TSNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSKQT-QQLTSFHDLDV  644

Query  673   DEVPLLILNGFEYVTQWGSDPYSIPLRADTSKPKLTQQDVTDLIAYMNKGGSVLIMENVM  732
             + +PL+I+N+++Y  +  + PY IPL AD + PKL++ DVTDLI Y+N+GGSVL+ME ++
Sbjct  645   NTIPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETII  704

Query  733   SNLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQRRSTPIWVYERYPAV  789
             +     + S + RLLD+AG++ ++ +SVV ++   + G PDR R +R   IWV ERY+AV
Sbjct  705   NT----NNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAV  760

Query  790   DGKP------PYTIDDTTKEVIWKYQQENKPDDKPKLEVASW-QEEVEGKQVTQFAFIDE  842
             ++ +      PY I+     + WKY  EN+PDDKPKLEVASW + E  +K +T++AFIDE
Sbjct  761   EDESSGQQTLPYVINSDGS-IEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDE  819

Query  843   ADH--------------KTPE----SLAAAKQRILDAF------PGLEVCKDSDYHYEVN  878
             ++H                PE    SL+ AK+++LDAF       +   CK+S++HYE+N
Sbjct  820   SQHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEIN  879

Query  879   CLEYRPGTGVPVTGGMYVPQYTQLDLGADTAKAMLQAADLGTNIQRLYQHELYFRTNGRQ  938
             CLEYRPG ++P+TGG+YVP+YT++ LG   A+AM++AA+LGTNI+ LYQHE YFRT+G+ 
Sbjct  880   CLEYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKS  939

Query  939   GERLNSVDLERLYQNMSVWLWNETKYRYEEGKEDELGFKTFTEFLNCYTNNAYVG-TQCS  997
             G RLNSVDL+R+YQNMSVWLWN+  YRY++ + DELGFK FT++LNCYT+N   G T C+
Sbjct  940   GARLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCP  999

Query  998   AELKKSLIDNKMIYGEESSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYP  1056
              ELK  L +  MIY+E S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IKVDV KYP
Sbjct  1000  EELKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYP  1059

Query  1057  GAVSEEGQNVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIKSNANV-PVTVTVALAD  1115
             G V+  +     T+ + +N + WFAGN Q+TG WA A++  ++  +++  PVT+T+ALAD
Sbjct  1060  GEVTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALAD  1119

Query  1116  DLTGREKHEVALNRPPRVTKTYSL--DASGTVKFKVPYGGLIYIKGDSKDNESASFTFTG  1173
             DLTGREKHE++L+RPPR++K++ +  D++    F VPYGGLIY +G+  +++   +TF+G
Sbjct  1120  DLTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGG--NSQQVKLTFSG  1177

Query  1174  VVKAPFYKDGAWKNDLNSPAPLGELESDAFVYTAPKKNLNASNYTGGLKQFANDLDTFAS  1233
              + AP+Y DG W+N L S AP+GE+ SD+F++TAPK NLNA  Y GG+ QFA+DLD F++
Sbjct  1178  TIDAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSA  1237

Query  1234  SMNDFYGRNE--EDGKHRMFTYKNLTGHKHRFANDVQISIGDAHSGYPVMNSSFstnstt  1291
              +NDFY+R+E  +++K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +
Sbjct  1238  DLNDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRS  1297

Query  1292  lpttplnDWLIWHEVGHNAAETPLTVPGATEVANNVLALYMQDRYLGKMNRVADDITVAP  1351
             L T PLN WL+WHEVGHN+AE+P+ V GATEV NN+LALYMQDR  GKM+RV +DI  A 
Sbjct  1298  LNTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAF  1357

Query  1352  EYLEESNGQAWARGGAGDRLLMYAQLKEWAEKNFDIKKWYPEGELPKFFSDREGMKGWNL  1411
             ++++  +G+AW+ GGAG+RL+M+AQLKEWAE +FDI+ WY +  LP F+ +  G+KGWNL
Sbjct  1358  DFVNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYND-KLPGFYIEESGIKGWNL  1416

Query  1412  FQLMHRKARGDDVGDKTFGGKNYCAESNGNAADTLMLCASWVAQTDLSEFFKKWNPGANA  1471
             F+LMHR  R ++ ++    G N C  S    +D LMLCAS  AQTDLSEFFK WNPG++A
Sbjct  1417  FKLMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKA  1476

Query  1472  YQLPGASEMSFEGGVSQSAYNTLASLKLPKPEQGPETINKVTEH  1515
             +  P+ ++  +EGG++ S+ + + SLKL  P++ P +IN VT+H
Sbjct  1477  FLYPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQH  1520

17) yghJ in NC_017635


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1180 bits (4475),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 720/1484 (49%), Positives = 1050/1484 (71%), Gaps = 85/1484 (5%)

Query  94    LTLGGSLRVTGDITCNDESSDGFTFTPGDKVTCVAGNNTTIATFDTQSEAARSLRAVEKV  153
             +TL+G+L+  + + CND+ +  F ++  D+V C   N  +IATF +  +A ++ R  +  
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTI-NGRSIATFTAPFDANKNGRNTDSE  118

Query  154   SFSLEDAQELAGSDNKKSNALSLVTSMNSCPANTEQVCLEFSSVIESKRFDSLYKQ-IDL  212
              +SL  A+E  +S  ++ N   L+ +M +   + +++ L F S +++  F++  ++ +DL
Sbjct  119   VLSLISADEYRDSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDL  176

Query  213   APEEFKKLVNEEVENNAATDKAPSTHTSPVVPATTPGTKPDLNASFVSANAEQFYQYQPT  272
             + ++F   + E + N+   DK PSTH + + P+ TPGT ++LN++FVSANAE+   Y PT
Sbjct  177   PKDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPT  236

Query  273   EIILSEGRLVDSQGDGVVGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTF  324
             ++I S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ ISF+IDTF
Sbjct  237   DVIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTF  296

Query  325   ELGSVRGNKSTIALTELGDEVRGANIDQLIHRYSKAGQNHTRVVPDEVRKVFAEYPNVIN  384
             ELGS R+NK+ + ++ELG +  G N + LIHRY+  +++   ++PD V ++F+ YPNVIN
Sbjct  297   ELGSTRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKL-IIPDKVTQIFSLYPNVIN  355

Query  385   EIINLSLSNGAT---LGEGEQVVNLPNEFIEQFKTGQAKEIDTAICA----KTDGCNEAR  437
             E+I+LSL+NG     +G+G   + +P EF+ QF +G A  ID +I +    K ++    +
Sbjct  356   EVISLSLPNGDIELDIGDGKTQI-VPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKK  414

Query  438   WFSLTTRNVNDGQIQGVINKLWGVDTNY-----KSVSKFHVFHDSTNFYGSTGNARGQAV  492
                 ++ + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA 
Sbjct  415   ---KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAA  471

Query  493   VNISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVRPENVTRETATFNLPF  552
             VNI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ +T+TFNLPF
Sbjct  472   VNIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPF  531

Query  553   ISLGQVGDGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENVLRY  612
             ISLG++G GKLMV+GN++YNS+L CPNG+SW G V K+G C+L+SD DDM NF  NV+RY
Sbjct  532   ISLGEIGKGKLMVLGNARYNSVLVCPNGFSWGGTV-KNGTCSLSSDRDDMANFFSNVIRY  590

Query  613   LSNDRWLPDAKSSMTVGTNLDTVYFKKHGQVLGNSAPFAFHKDFTGITVKPMTSYGNLNP  672
             L+       + + + VGTN+  VYFK  GQ +G+ A F ++  F+  T + +TS+ +L+ 
Sbjct  591   LTGS-----TSNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSKQT-QQLTSFHDLDV  644

Query  673   DEVPLLILNGFEYVTQWGSDPYSIPLRADTSKPKLTQQDVTDLIAYMNKGGSVLIMENVM  732
             + +PL+I+N+++Y  +  + PY IPL AD + PKL++ DVTDLI Y+N+GGSVL+ME ++
Sbjct  645   NTIPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETII  704

Query  733   SNLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQRRSTPIWVYERYPAV  789
             +     + S + RLLD+AG++ ++ +SVV ++   + G PDR R +R   IWV ERY+AV
Sbjct  705   NT----NNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAV  760

Query  790   DGKP------PYTIDDTTKEVIWKYQQENKPDDKPKLEVASW-QEEVEGKQVTQFAFIDE  842
             ++ +      PY I+     + WKY  EN+PDDKPKLEVASW + E  +K +T++AFIDE
Sbjct  761   EDESSGQQTLPYVINSDGS-IEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDE  819

Query  843   ADH--------------KTPE----SLAAAKQRILDAF------PGLEVCKDSDYHYEVN  878
             ++H                PE    SL+ AK+++LDAF       +   CK+S++HYE+N
Sbjct  820   SQHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEIN  879

Query  879   CLEYRPGTGVPVTGGMYVPQYTQLDLGADTAKAMLQAADLGTNIQRLYQHELYFRTNGRQ  938
             CLEYRPG ++P+TGG+YVP+YT++ LG   A+AM++AA+LGTNI+ LYQHE YFRT+G+ 
Sbjct  880   CLEYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKS  939

Query  939   GERLNSVDLERLYQNMSVWLWNETKYRYEEGKEDELGFKTFTEFLNCYTNNAYVG-TQCS  997
             G RLNSVDL+R+YQNMSVWLWN+  YRY++ + DELGFK FT++LNCYT+N   G T C+
Sbjct  940   GARLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCP  999

Query  998   AELKKSLIDNKMIYGEESSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYP  1056
              ELK  L +  MIY+E S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IKVDV KYP
Sbjct  1000  EELKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYP  1059

Query  1057  GAVSEEGQNVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIKSNANV-PVTVTVALAD  1115
             G V+  +     T+ + +N + WFAGN Q+TG WA A++  ++  +++  PVT+T+ALAD
Sbjct  1060  GEVTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALAD  1119

Query  1116  DLTGREKHEVALNRPPRVTKTYSL--DASGTVKFKVPYGGLIYIKGDSKDNESASFTFTG  1173
             DLTGREKHE++L+RPPR++K++ +  D++    F VPYGGLIY +G+  +++   +TF+G
Sbjct  1120  DLTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGG--NSQQVKLTFSG  1177

Query  1174  VVKAPFYKDGAWKNDLNSPAPLGELESDAFVYTAPKKNLNASNYTGGLKQFANDLDTFAS  1233
              + AP+Y DG W+N L S AP+GE+ SD+F++TAPK NLNA  Y GG+ QFA+DLD F++
Sbjct  1178  TIDAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSA  1237

Query  1234  SMNDFYGRNE--EDGKHRMFTYKNLTGHKHRFANDVQISIGDAHSGYPVMNSSFstnstt  1291
              +NDFY+R+E  +++K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +
Sbjct  1238  DLNDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRS  1297

Query  1292  lpttplnDWLIWHEVGHNAAETPLTVPGATEVANNVLALYMQDRYLGKMNRVADDITVAP  1351
             L T PLN WL+WHEVGHN+AE+P+ V GATEV NN+LALYMQDR  GKM+RV +DI  A 
Sbjct  1298  LNTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAF  1357

Query  1352  EYLEESNGQAWARGGAGDRLLMYAQLKEWAEKNFDIKKWYPEGELPKFFSDREGMKGWNL  1411
             ++++  +G+AW+ GGAG+RL+M+AQLKEWAE +FDI+ WY +  LP F+ +  G+KGWNL
Sbjct  1358  DFVNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYND-KLPGFYIEESGIKGWNL  1416

Query  1412  FQLMHRKARGDDVGDKTFGGKNYCAESNGNAADTLMLCASWVAQTDLSEFFKKWNPGANA  1471
             F+LMHR  R ++ ++    G N C  S    +D LMLCAS  AQTDLSEFFK WNPG++A
Sbjct  1417  FKLMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKA  1476

Query  1472  YQLPGASEMSFEGGVSQSAYNTLASLKLPKPEQGPETINKVTEH  1515
             +  P+ ++  +EGG++ S+ + + SLKL  P++ P +IN VT+H
Sbjct  1477  FLYPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQH  1520

18) yghJ in NC_017664


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1180 bits (4475),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 720/1484 (49%), Positives = 1050/1484 (71%), Gaps = 85/1484 (5%)

Query  94    LTLGGSLRVTGDITCNDESSDGFTFTPGDKVTCVAGNNTTIATFDTQSEAARSLRAVEKV  153
             +TL+G+L+  + + CND+ +  F ++  D+V C   N  +IATF +  +A ++ R  +  
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTI-NGRSIATFTAPFDANKNGRNTDSE  118

Query  154   SFSLEDAQELAGSDNKKSNALSLVTSMNSCPANTEQVCLEFSSVIESKRFDSLYKQ-IDL  212
              +SL  A+E  +S  ++ N   L+ +M +   + +++ L F S +++  F++  ++ +DL
Sbjct  119   VLSLISADEYRDSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDL  176

Query  213   APEEFKKLVNEEVENNAATDKAPSTHTSPVVPATTPGTKPDLNASFVSANAEQFYQYQPT  272
             + ++F   + E + N+   DK PSTH + + P+ TPGT ++LN++FVSANAE+   Y PT
Sbjct  177   PKDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPT  236

Query  273   EIILSEGRLVDSQGDGVVGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTF  324
             ++I S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ ISF+IDTF
Sbjct  237   DVIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTF  296

Query  325   ELGSVRGNKSTIALTELGDEVRGANIDQLIHRYSKAGQNHTRVVPDEVRKVFAEYPNVIN  384
             ELGS R+NK+ + ++ELG +  G N + LIHRY+  +++   ++PD V ++F+ YPNVIN
Sbjct  297   ELGSTRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKL-IIPDKVTQIFSLYPNVIN  355

Query  385   EIINLSLSNGAT---LGEGEQVVNLPNEFIEQFKTGQAKEIDTAICA----KTDGCNEAR  437
             E+I+LSL+NG     +G+G   + +P EF+ QF +G A  ID +I +    K ++    +
Sbjct  356   EVISLSLPNGDIELDIGDGKTQI-VPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKK  414

Query  438   WFSLTTRNVNDGQIQGVINKLWGVDTNY-----KSVSKFHVFHDSTNFYGSTGNARGQAV  492
                 ++ + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA 
Sbjct  415   ---KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAA  471

Query  493   VNISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVRPENVTRETATFNLPF  552
             VNI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ +T+TFNLPF
Sbjct  472   VNIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPF  531

Query  553   ISLGQVGDGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENVLRY  612
             ISLG++G GKLMV+GN++YNS+L CPNG+SW G V K+G C+L+SD DDM NF  NV+RY
Sbjct  532   ISLGEIGKGKLMVLGNARYNSVLVCPNGFSWGGTV-KNGTCSLSSDRDDMANFFSNVIRY  590

Query  613   LSNDRWLPDAKSSMTVGTNLDTVYFKKHGQVLGNSAPFAFHKDFTGITVKPMTSYGNLNP  672
             L+       + + + VGTN+  VYFK  GQ +G+ A F ++  F+  T + +TS+ +L+ 
Sbjct  591   LTGS-----TSNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSKQT-QQLTSFHDLDV  644

Query  673   DEVPLLILNGFEYVTQWGSDPYSIPLRADTSKPKLTQQDVTDLIAYMNKGGSVLIMENVM  732
             + +PL+I+N+++Y  +  + PY IPL AD + PKL++ DVTDLI Y+N+GGSVL+ME ++
Sbjct  645   NTIPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETII  704

Query  733   SNLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQRRSTPIWVYERYPAV  789
             +     + S + RLLD+AG++ ++ +SVV ++   + G PDR R +R   IWV ERY+AV
Sbjct  705   NT----NNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAV  760

Query  790   DGKP------PYTIDDTTKEVIWKYQQENKPDDKPKLEVASW-QEEVEGKQVTQFAFIDE  842
             ++ +      PY I+     + WKY  EN+PDDKPKLEVASW + E  +K +T++AFIDE
Sbjct  761   EDESSGQQTLPYVINSDGS-IEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDE  819

Query  843   ADH--------------KTPE----SLAAAKQRILDAF------PGLEVCKDSDYHYEVN  878
             ++H                PE    SL+ AK+++LDAF       +   CK+S++HYE+N
Sbjct  820   SQHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEIN  879

Query  879   CLEYRPGTGVPVTGGMYVPQYTQLDLGADTAKAMLQAADLGTNIQRLYQHELYFRTNGRQ  938
             CLEYRPG ++P+TGG+YVP+YT++ LG   A+AM++AA+LGTNI+ LYQHE YFRT+G+ 
Sbjct  880   CLEYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKS  939

Query  939   GERLNSVDLERLYQNMSVWLWNETKYRYEEGKEDELGFKTFTEFLNCYTNNAYVG-TQCS  997
             G RLNSVDL+R+YQNMSVWLWN+  YRY++ + DELGFK FT++LNCYT+N   G T C+
Sbjct  940   GARLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCP  999

Query  998   AELKKSLIDNKMIYGEESSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYP  1056
              ELK  L +  MIY+E S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IKVDV KYP
Sbjct  1000  EELKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYP  1059

Query  1057  GAVSEEGQNVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIKSNANV-PVTVTVALAD  1115
             G V+  +     T+ + +N + WFAGN Q+TG WA A++  ++  +++  PVT+T+ALAD
Sbjct  1060  GEVTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALAD  1119

Query  1116  DLTGREKHEVALNRPPRVTKTYSL--DASGTVKFKVPYGGLIYIKGDSKDNESASFTFTG  1173
             DLTGREKHE++L+RPPR++K++ +  D++    F VPYGGLIY +G+  +++   +TF+G
Sbjct  1120  DLTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGG--NSQQVKLTFSG  1177

Query  1174  VVKAPFYKDGAWKNDLNSPAPLGELESDAFVYTAPKKNLNASNYTGGLKQFANDLDTFAS  1233
              + AP+Y DG W+N L S AP+GE+ SD+F++TAPK NLNA  Y GG+ QFA+DLD F++
Sbjct  1178  TIDAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSA  1237

Query  1234  SMNDFYGRNE--EDGKHRMFTYKNLTGHKHRFANDVQISIGDAHSGYPVMNSSFstnstt  1291
              +NDFY+R+E  +++K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +
Sbjct  1238  DLNDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRS  1297

Query  1292  lpttplnDWLIWHEVGHNAAETPLTVPGATEVANNVLALYMQDRYLGKMNRVADDITVAP  1351
             L T PLN WL+WHEVGHN+AE+P+ V GATEV NN+LALYMQDR  GKM+RV +DI  A 
Sbjct  1298  LNTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAF  1357

Query  1352  EYLEESNGQAWARGGAGDRLLMYAQLKEWAEKNFDIKKWYPEGELPKFFSDREGMKGWNL  1411
             ++++  +G+AW+ GGAG+RL+M+AQLKEWAE +FDI+ WY +  LP F+ +  G+KGWNL
Sbjct  1358  DFVNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYND-KLPGFYIEESGIKGWNL  1416

Query  1412  FQLMHRKARGDDVGDKTFGGKNYCAESNGNAADTLMLCASWVAQTDLSEFFKKWNPGANA  1471
             F+LMHR  R ++ ++    G N C  S    +D LMLCAS  AQTDLSEFFK WNPG++A
Sbjct  1417  FKLMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKA  1476

Query  1472  YQLPGASEMSFEGGVSQSAYNTLASLKLPKPEQGPETINKVTEH  1515
             +  P+ ++  +EGG++ S+ + + SLKL  P++ P +IN VT+H
Sbjct  1477  FLYPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQH  1520

19) yghJ in NC_013364


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1176 bits (4462),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 727/1483 (50%), Positives = 1054/1483 (72%), Gaps = 82/1483 (5%)

Query  94    LTLGGSLRVTGDITCNDESSDGFTFTPGDKVTCVAGNNTTIATFDTQSEAARSLRAVEKV  153
             +TL+G+L+  + + CND+ +  F ++  D+V C   N  +IATF +  +A ++ R  +  
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTI-NGRSIATFTAPFDANKNGRNTDSE  118

Query  154   SFSLEDAQELAGSDNKKSNALSLVTSMNSCPANTEQVCLEFSSVIESKRFDSLYKQ-IDL  212
              +SL  A+E  +S  ++ N   L+ +M +   + +++ L F S +++  F++  ++ +DL
Sbjct  119   VLSLISADEYRDSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDL  176

Query  213   APEEFKKLVNEEVENNAATDKApsthtspvvpvttpgtkpDLNASFVSANAEQFYQYQPS  272
             + ++F   + E + N+   DK PSTH + + P  TPGT ++LN++FVSANAE+   Y P+
Sbjct  177   PKDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPT  236

Query  273   EIILSEGRLVDSQGYGVAGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTF  324
             ++I S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ ISF+IDTF
Sbjct  237   DVIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTF  296

Query  325   ELGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVIN  384
             ELGS R+NK+ + ++ELG +  G N + LIHRY++ ++++  ++PD V ++F+ YPNVIN
Sbjct  297   ELGSTRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKL-IIPDKVTQIFSLYPNVIN  355

Query  385   EIINLSLSNGAT-LDEGEQVVNL-PNEFIEQFKTGQAKEIDTAICA----KTDGCNEARW  438
             E+I+LSL+NG   LD G+   ++ P EF+ QF +G A  ID +I +    K ++    + 
Sbjct  356   EVISLSLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKK-  414

Query  439   FSLTTRNVNDGQIQGVINKLWGVDTNY-----KSVSKFHVFHDSTNFYGSTGNARGQAVV  493
                ++ + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA V
Sbjct  415   --KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAV  472

Query  494   NISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSLVEPENVTRDTATFNLPFI  553
             NI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFI
Sbjct  473   NIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFI  532

Query  554   SLGQVGEGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENVLRYL  613
             SLG++G GKLMV+GN++YNS+L CPNG+SW G V K+G C+L+SD DDM NF  NV+RYL
Sbjct  533   SLGEIGKGKLMVLGNARYNSVLVCPNGFSWGGTV-KNGTCSLSSDRDDMANFFSNVIRYL  591

Query  614   SDDKWTPDAKASMTVGTNLDTVYFKRHGQVTGNSAAFDFHPDFAGISVEHLSSYGDLDPQ  673
                  T  +   + VGTN+  VYFK  GQ  G+ A F++++ F+    ++L+S+ DLD +
Sbjct  592   -----TGSTSNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSK-QTQQLTSFHDLDVN  645

Query  674   EMPLLILNGFEYVTQVGNDPYAIPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMS  733
              +PL+I+N+++Y  +  N PY IPL AD + PKL++ DVTDLI Y+N+GGSVL+ME +++
Sbjct  646   TIPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIIN  705

Query  734   NLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPNRVRQQRATGIWVYERYPAVD  790
                  + S + RLLD+AG++ ++ +SVV ++   + G P+R R QR  GIWV ERY+AV+
Sbjct  706   T----NNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVE  761

Query  791   G------ALPYTIDSKTGEVKWKYQVENKPDDKPKLEVASWLE-DVDGKQETRYAFIDEA  843
             +      +LPY I+S  G + WKY VEN+PDDKPKLEVASW+E + ++K  T+YAFIDE+
Sbjct  762   DESSGQQTLPYVINSD-GSIEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDES  820

Query  844   DH---------------KTE---DSLKAAKEKIFAAF------PGLKECTNPAYHYEVNC  879
             +H               K E    SL  AK+K++ AF       +  EC N+ +HYE+NC
Sbjct  821   QHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINC  880

Query  880   LEYRPGTGVPVTGGMYVPQYTQLSLNADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKG  939
             LEYRPG ++P+TGG+YVP+YT++ L    A+AMV+AA+LGTNI+ LYQHE YFRT+G+ G
Sbjct  881   LEYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSG  940

Query  940   ERLSSVDLERLYQNMSVWLWNDTSYRYEEGKNDELGFKTFTEFLNCYANDAYAGGTKCSA  999
              RL+SVDL+R+YQNMSVWLWND  YRY++ ++DELGFK FT++LNCY+++  +G T C+ 
Sbjct  941   ARLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPE  1000

Query  1000  DLKKSLVDNNMIYGDGSSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPG  1058
             +LK  L +  MIY++ S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IKVDV KYPG
Sbjct  1001  ELKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPG  1060

Query  1059  AVSEEGQNVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIKSNANV-PVTVTVALADD  1117
              V+  +     T+ + +N + WFAGN Q+TG WA A++  ++  +++  PVT+T+ALADD
Sbjct  1061  EVTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADD  1120

Query  1118  LTGREKHEVALNRPPRVTKTYSL--DASGTVKFKVPYGGLIYIKGNSSTNESASFTFTGV  1175
             LTGREKHE++L+RPPR++K++ +  D++    F VPYGGLIY +G +S  +   +TF+G 
Sbjct  1121  LTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNS--QQVKLTFSGT  1178

Query  1176  VKAPFYKDGAWKNDLNSPAPLGELESDAFVYTTPKKNLNASNYTGGLEQFANDLDTFASS  1235
             + AP+Y DG W+N L S AP+GE+ SD+F++T+PK NLNA  Y GG+EQFA+DLD F++ 
Sbjct  1179  IDAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSAD  1238

Query  1236  MNDFYGRDETS--GKHRMFTYKALTGHKHRFTNDVQISIGDAHSGYPVMNSSFstnsttl  1293
             +NDFY+RDE +  +K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +L
Sbjct  1239  LNDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSL  1298

Query  1294  pttplnDWLIWHEVGHNAAETPLTVPGATEVANNVLALYMQDRYLGKMNRVADDITVAPE  1353
              T PLN WL+WHEVGHN+AE+P+ V GATEV NN+LALYMQDR  GKM+RV +DI  A +
Sbjct  1299  NTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFD  1358

Query  1354  YLEESNGQAWARGGAGDRLLMYAQLKEWAEKNFDIKKWYPEGELPKFFSDREGMKGWNLF  1413
             +++  +G+AW+ GGAG+RL+M+AQLKEWAE +FDI+ WY +  LP F+ +  G+KGWNLF
Sbjct  1359  FVNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYND-KLPGFYIEESGIKGWNLF  1417

Query  1414  QLMHRKARGDDVGDKTFGGKNYCAESNGNAADTLMLCASWVAQTDLSEFFKKWNPGANAY  1473
             +LMHR  R ++ ++    G N C  S    +D LMLCAS  AQTDLSEFFK WNPG++A+
Sbjct  1418  KLMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKAF  1477

Query  1474  QLPGASEMSFEGGVSQSAYNTLASLKLPKPEQGPETINKVTEH  1516
               P+ ++  +EGG++ S+ + + SLKL  P++ P +IN VT+H
Sbjct  1478  LYPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQH  1520

20) ECO55CA74_17575 in NC_017656


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1175 bits (4456),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 711/1486 (48%), Positives = 1046/1486 (71%), Gaps = 90/1486 (6%)

Query  50    LTLGGSQRVTGAT-CNGESSDGFTFKPGEDVTCVAGNTTIATFNTQSEAARSLRAVEKVS  108
             +TL+G+ +  ++  CN++ +  F +   ++V C     +IATF +  +A ++ R  +   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  109   FSLEDAQELAASDNKKSNAVSLVTSSNSCPADTEQVCLEFSSVIESKRFDSLYKQ-IDLA  167
             +SL  A+E   S  ++ N   L+ +  +  +D  ++ L F S +++  F++  ++ +DL+
Sbjct  120   LSLISADEYRDSPVRQENLQILMKNMATIHGD--KISLVFRSTLDALTFENYLRHNLDLP  177

Query  168   PEEFKKLVNEEVENNAATDKAPSTHTSPVVPATTPGTKPDLNASFVSANAEQFYQYQPTE  227
              ++F   + E + N+   DK PSTH + + P+ TPGT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTD  237

Query  228   IIRSEGRLVDSQGYGVAGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTFE  279
             +I S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ ISF+IDTFE
Sbjct  238   VIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFE  297

Query  280   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTRQNNTRVVPDDVRKVFAEYPNVINE  339
             LGS R+NK+ + ++ELG +  G N + LIHRY++  +++  ++PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTDFYISELGKDNEGKNAEALIHRYASI-DDSKLIIPDKVTQIFSLYPNVINE  356

Query  340   IINLSLSNGAT-LDEGEQVVNL-PNEFIEQFNTGQAKEIDTAICAKTDGCNEVRWFSL--  395
             +I+LSL+NG   LD G+   ++ P EF+ QF++G A  ID +I +       + +F +  
Sbjct  357   VISLSLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQSISP-------ISRFKFED  409

Query  396   ------TTRNVNDGQIQGVINKLWGVDEDY-----KSVTKFHVFHDSTNFYGSTGNARGQ  444
                   ++ + + +QIQ++INKLWG  +       K V +FH+FHDSTNFYGSTG+AR+Q
Sbjct  410   SLPKKKSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQ  469

Query  445   AVVNISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVQPENVTRETATFNL  504
             A VNI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ +T+TFNL
Sbjct  470   AAVNIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNL  529

Query  505   PFISLGQVGKGKLMVIGNPHYNSILRCPNGYSWNGSVNKDGQCTLNSDSDDMKNFMENVL  564
             PFISLG++GKGKLMV+GN++YNS+L CPNG+SW G+V K+G C+L+SD DDM NF  NV+
Sbjct  530   PFISLGEIGKGKLMVLGNARYNSVLVCPNGFSWGGTV-KNGTCSLSSDRDDMANFFSNVI  588

Query  565   RYLSNDRWLPDAKSNMTVGTNLDTVYFKKHGQVTGNSAAFGFHPDFAGISVEHLSSYGDL  624
             RYL+       + +++ VGTN+  VYFK  GQ  G+ A F +++ F+    ++L+S+ DL
Sbjct  589   RYLTGS-----TSNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSK-QTQQLTSFHDL  642

Query  625   DPQDMPLLILNGFEYVTQVGGDPYAVPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMEN  684
             D + +PL+I+N+++Y  +    PY +PL AD + PKL++ DVTDLI Y+N+GGSVL+ME 
Sbjct  643   DVNTIPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMET  702

Query  685   VMSNLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQQRATGIWVYERYP  741
             +++     + S + RLLD+AG++ ++ +SVV ++   + G PDR R QR  GIWV ERY+
Sbjct  703   IINT----NNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYA  758

Query  742   FVDGKP------PYTIDETTKEVIWKYQQDNKPDDKPKLEVASW-QEEVEGKQVTRYAFI  794
              V++ +      PY I+     + WKY  +N+PDDKPKLEVASW + E  +K +T+YAFI
Sbjct  759   AVEDESSGQQTLPYVINSDGS-IEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFI  817

Query  795   DEAE-----------FKT-------KESLEAAKAKIFEKF------PGLKECKDPTYHYE  830
             DE++           ++        + SL  AK K+++ F       +  ECK++ +HYE
Sbjct  818   DESQHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYE  877

Query  831   VNCLEYRPGTGVPVTGGMYVPQYTQLSLNADTAKAMVQAADLGTNIQRLYQHELYFRTNG  890
             +NCLEYRPG ++P+TGG+YVP+YT++ L    A+AMV+AA+LGTNI+ LYQHE YFRT+G
Sbjct  878   INCLEYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKG  937

Query  891   RKGERLSSVDLERLYQNMSVWLWNDTSYRYEEGKNDELGFKTFTEFLNCYTNDAYTDGTR  950
             + G RL+SVDL+R+YQNMSVWLWND  YRY++ ++DELGFK FT++LNCYT++   + T 
Sbjct  938   KSGARLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTT  997

Query  951   CSADLKKSLVDNNMIYGDGSSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEK  1009
             C+ +LK  L +  MIY++ S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IKVDV K
Sbjct  998   CPEELKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRK  1057

Query  1010  YPGAVSVGGEEVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIKSNANV-PVTVTVAL  1068
             YPG V+  +     T+ + +N + WFAGN Q+TG WA A++  ++  +++  PVT+T+AL
Sbjct  1058  YPGEVTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIAL  1117

Query  1069  ADDLTGREKHEVALNRPPRVTKTYSL--DASGTVKFKVPYGGLIYIKGNSSTNESASFTF  1126
             ADDLTGREKHE++L+RPPR++K++ +  D++    F VPYGGLIY +G +S  +   +TF
Sbjct  1118  ADDLTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNS--QQVKLTF  1175

Query  1127  TGVVKAPFYKDGAWKNDLNSPAPLGELESDAFVYTTPKKNLNASNYTGGLEQFANDLDTF  1186
             +G + AP+Y DG W+N L S AP+GE+ SD+F++T+PK NLNA  Y GG+EQFA+DLD F
Sbjct  1176  SGTIDAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQF  1235

Query  1187  ASSMNDFYGRND--EDGKHRMFTFKNLPGHKHRFTNDVQISIGDAHSGYPVMnssfspns  1244
             ++ +NDFY+R++  +++K+R  T K++P ++H+F NDV IS+G AHSGYPVMN SF  +S
Sbjct  1236  SADLNDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSS  1295

Query  1245  ttlpttplnDWLIWHEVGHNAAETPLTVPGATEVANNVLALYMQDRYLGKMNRVADDITV  1304
              +L T PLN WL+WHEVGHN+AE+P+ V GATEV NN+LALYMQDR  GKM+RV +DI  
Sbjct  1296  RSLNTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRY  1355

Query  1305  APEYLEESNGQAWARGGAGDRLLMYAQLKEWAEKNFDITKWYPEGNLPKFYSEREGMKGW  1364
             A ++++  +G+AW+ GGAG+RL+M+AQLKEWAE +FDI  WY + +LP FY E  G+KGW
Sbjct  1356  AFDFVNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYND-KLPGFYIEESGIKGW  1414

Query  1365  NLFQLMHRKARGDEVSNDKFGGRNYCAESNGNAADTLMLCASWVAQTDLSEFFKKWNPGA  1424
             NLF+LMHR  R ++  + +  G N C  S    +D LMLCAS  AQTDLSEFFK WNPG+
Sbjct  1415  NLFKLMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGS  1474

Query  1425  NAYQLPGASEMSFEGGVSQSAYNTLASLDLPKPKQGPETINKVTEH  1470
             +A+  P+ ++  +EGG++ S+ + + SL L  P++ P +IN VT+H
Sbjct  1475  KAFLYPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQH  1520

21) UMNK88_3721 in NC_017641


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1173 bits (4449),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 727/1485 (49%), Positives = 1056/1485 (72%), Gaps = 85/1485 (5%)

Query  94    LTLGGSLRVTGDITCNDESSDGFTFTPGDKVTCVAGNNTTIATFDTQSEAARSLRAVEKV  153
             +TL+G+L+  + + CND+ +  F ++  D+V C   N  +IATF +  +A ++ R  +  
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTI-NGRSIATFTAPFDANKNGRNTDSE  118

Query  154   SFSLEDAQELAGSDNKKSNALSLVTSMNSCPANTEQVCLEFSSVIESKRFDSLYKQ-IDL  212
              +SL  A+E  +S  ++ N   L+ +M +   + +++ L F S +++  F++  ++ +DL
Sbjct  119   VLSLISADEYRDSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDL  176

Query  213   APEEFKKLVNEEVENNAATDKApsthtspvvpvttpgtkpDLNASFVSANAEEFYQYQPS  272
             + ++F   + E + N+   DK PSTH + + P  TPGT ++LN++FVSANAEE   Y P+
Sbjct  177   PKDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPT  236

Query  273   EIILSEGRLVDSQGYGVAGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTF  324
             ++I S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ ISF+IDTF
Sbjct  237   DVIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTF  296

Query  325   ELGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDEVRKVFAEYPNVIN  384
             ELGS R+NK+ + ++ELG +  G N + LIHRY++ ++++  ++PD V ++F+ YPNVIN
Sbjct  297   ELGSTRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKL-IIPDKVTQIFSLYPNVIN  355

Query  385   EIINLSLSNGAT---LGEGEQVVNLPNEFIEQFKTGQAKEIDTAICA----KTDGCNEAR  437
             E+I+LSL+NG     +G+G   + +P EF+ QF +G A  ID +I +    K ++    +
Sbjct  356   EVISLSLPNGDIELDIGDGKTQI-VPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKK  414

Query  438   WFSLTTRNVNDGQIQGVINKLWGVDTNY-----KSVSKFHVFHDSTNFYGSTGNARGQAV  492
                 ++ + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA 
Sbjct  415   ---KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAA  471

Query  493   VNISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSLVEPENVTRDTATFNLPF  552
             VNI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPF
Sbjct  472   VNIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPF  531

Query  553   ISLGQVGEGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENVLRY  612
             ISLG++G GKLMV+GN++YNS+L CPNG+SW G V K+G C+L+SD DDM NF  NV+RY
Sbjct  532   ISLGEIGKGKLMVLGNARYNSVLVCPNGFSWGGTV-KNGTCSLSSDRDDMANFFSNVIRY  590

Query  613   LSDDKWKPDAKASMIVGTNLDTVYFKRHGQVTGNSAAFDFHPDFAGISVEHLSSYGDLDP  672
             L++      +   +IVGTN+  VYFK  GQ  G+ A F++++ F+    ++L+S+ DLD 
Sbjct  591   LTGS-----TSNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSK-QTQQLTSFHDLDV  644

Query  673   QEMPLLILNGFEYVTQVGNDPYEIPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVM  732
             + +PL+I+N+++Y  +  N PY+IPL AD + PKL++ DVTDLI Y+N+GGSVL+ME ++
Sbjct  645   NTIPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETII  704

Query  733   SNLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPNRVRQQRATGIWVYERYPAV  789
             +     + S + RLLD+AG++ ++ +SVV ++   + G P+R R QR  GIWV ERY+AV
Sbjct  705   NT----NNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAV  760

Query  790   DG------ALPYTIDSKTGEVKWKYQVENKPDDKPKLEVASWLE-DVDGKQETRYAFIDE  842
             ++      +LPY I+S  G + WKY VEN+PDDKPKLEVASW+E + ++K  T+YAFIDE
Sbjct  761   EDESSGQQTLPYVINSD-GSIEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDE  819

Query  843   ADH---------------KTE---DSLKAAKEKIFAAF------PGLKECTNPAYHYEVN  878
             ++H               K E    SL  AK+K++ AF       +  EC N+ +HYE+N
Sbjct  820   SQHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEIN  879

Query  879   CLEYRPGTGVPVTGGMYVPQYTQLSLNADTAKAMVQAADLGTNIQRLYQHELYFRTNGRK  938
             CLEYRPG ++P+TGG+YVP+YT++ L    A+AMV+AA+LGTNI+ LYQHE YFRT+G+ 
Sbjct  880   CLEYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKS  939

Query  939   GERLSSVDLERLYQNMSVWLWNDTSYRYEEGKNDELGFKTFTEFLNCYANDAYAGGTKCS  998
             G RL+SVDL+R+YQNMSVWLWND  YRY++ ++DELGFK FT++LNCY+++  +G T C+
Sbjct  940   GARLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCP  999

Query  999   ADLKKSLVDNNMIYGDGSSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYP  1057
              +LK  L +  MIY++ S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IKVDV KYP
Sbjct  1000  EELKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYP  1059

Query  1058  GAVSEEGQNVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIKSNANV-PVTVTVALAD  1116
             G V+  +     T+ + +N + WFAGN Q+TG WA A++  ++  +++  PVT+T+ALAD
Sbjct  1060  GEVTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALAD  1119

Query  1117  DLTGREKHEVALNRPPRVTKTYSL--DASGTVKFKVPYGGLIYIKGNSSTNESASFTFTG  1174
             DLTGREKHE++L+RPPR++K++ +  D++    F VPYGGLIY +G +S  +   +TF+G
Sbjct  1120  DLTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNS--QQVKLTFSG  1177

Query  1175  VVKAPFYKDGAWKNDLNSPAPLGELESDAFVYTTPKKNLNASNYTGGLEQFANDLDTFAS  1234
              + AP+Y DG W+N L S AP+GE+ SD+F++T+PK NLNA  Y GG+EQFA+DLD F++
Sbjct  1178  TIDAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSA  1237

Query  1235  SMNDFYGRD--SEDGKHRMFTYKNLPGHKHRFTNDVQISIGDAHSGYPVMnssfspnstt  1292
              +NDFY+RD  ++++K+R  T K++P ++H+F NDV IS+G AHSGYPVMN SF  +S +
Sbjct  1238  DLNDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRS  1297

Query  1293  lpttplnDWLIWHEVGHNAAETPLTVPGATEVANNVLALYMQDRYLGKMNRVADDITVAP  1352
             L T PLN WL+WHEVGHN+AE+P+ V GATEV NN+LALYMQDR  GKM+RV +DI  A 
Sbjct  1298  LNTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAF  1357

Query  1353  EYLEESNNQAWARGGAGDRLLMYAQLKEWAEKNFDIKKWYPDGTPLPEFYSEREGMKGWN  1412
             ++++  + +AW+ GGAG+RL+M+AQLKEWAE +FDI+ WY D   LP FY E  G+KGWN
Sbjct  1358  DFVNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYND--KLPGFYIEESGIKGWN  1415

Query  1413  LFQLMHRKARGDEVSNDKFGGKNYCAESNGNAADTLMLCASWVAQTDLSEFFKKWNPGAN  1472
             LF+LMHR  R ++  + +  G N C  S    +D LMLCAS  AQTDLSEFFK WNPG++
Sbjct  1416  LFKLMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSK  1475

Query  1473  AYQLPGASEMSFEGGVSQSAYNTLASLDLPKPEQGPETINQVTEH  1517
             A+  P+ ++  +EGG++ S+ + + SL L  P++ P +IN VT+H
Sbjct  1476  AFLYPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQH  1520

22) yghJ in NC_013941


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1173 bits (4450),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 710/1486 (48%), Positives = 1046/1486 (71%), Gaps = 90/1486 (6%)

Query  94    LTLGGSQRVTGAT-CNGESSDGFTFKPGEDVTCVAGNTTIATFNTQSEAARSLRAVEKVS  152
             +TL+G+ +  ++  CN++ +  F +   ++V C     +IATF +  +A ++ R  +   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  153   FSLEDAQELAASDNKKSNAVSLVTSSNSCPADTEQVCLEFSSVIESKRFDSLYKQ-IDLA  211
             +SL  A+E   S  ++ N   L+ +  +  +D  ++ L F S +++  F++  ++ +DL+
Sbjct  120   LSLISADEYRDSPVRQENLQILMKNMATIHGD--KISLVFRSTLDALTFENYLRHNLDLP  177

Query  212   PEEFKKLVNEEVENNAATDKAPSTHTSPVVPATTPGTKPDLNASFVSANAEQFYQYQPTE  271
              ++F   + E + N+   DK PSTH + + P+ TPGT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTD  237

Query  272   IIRSEGRLVDSQGYGVAGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTFE  323
             +I S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ ISF+IDTFE
Sbjct  238   VIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFE  297

Query  324   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTRQNNTRVVPDDVRKVFAEYPNVINE  383
             LGS R+NK+ + ++ELG +  G N + LIHRY++  +++  ++PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTDFYISELGKDNEGKNAEALIHRYASI-DDSKLIIPDKVTQIFSLYPNVINE  356

Query  384   IINLSLSNGAT-LDEGEQVVNL-PNEFIEQFNTGQAKEIDTAICAKTDGCNEVRWFSL--  439
             +I+LSL+NG   LD G+   ++ P EF+ QF++G A  ID +I +       + +F +  
Sbjct  357   VISLSLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQSISP-------ISRFKFED  409

Query  440   ------TTRNVNDGQIQGVINKLWGVDEDY-----KSVTKFHVFHDSTNFYGSTGNARGQ  488
                   ++ + + +QIQ++INKLWG  +       K V +FH+FHDSTNFYGSTG+AR+Q
Sbjct  410   SLPKKKSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQ  469

Query  489   AVVNISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVQPENVTRETATFNL  548
             A VNI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ +T+TFNL
Sbjct  470   AAVNIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNL  529

Query  549   PFIPLGQVGKGKLMVIGNPHYNSILRCPNGYSWNGSVNKDGQCTLNSDSDDMKNFMENVL  608
             PFI+LG++GKGKLMV+GN++YNS+L CPNG+SW G+V K+G C+L+SD DDM NF  NV+
Sbjct  530   PFISLGEIGKGKLMVLGNARYNSVLVCPNGFSWGGTV-KNGTCSLSSDRDDMANFFSNVI  588

Query  609   RYLSNDRWLPDAKSNMTVGTNLDTVYFKKHGQVTGNSAAFGFHPDFAGISVEHLSSYGDL  668
             RYL+       + +++ VGTN+  VYFK  GQ  G+ A F +++ F+    ++L+S+ DL
Sbjct  589   RYLTGS-----TSNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSK-QTQQLTSFHDL  642

Query  669   DPQDMPLLILNGFEYVTQVGGDPYAVPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMEN  728
             D + +PL+I+N+++Y  +    PY +PL AD + PKL++ DVTDLI Y+N+GGSVL+ME 
Sbjct  643   DVNTIPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMET  702

Query  729   VMSNLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQQRATGIWVYERYP  785
             +++     + S + RLLD+AG++ ++ +SVV ++   + G PDR R QR  GIWV ERY+
Sbjct  703   IINT----NNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYA  758

Query  786   FVDGKP------PYTIDETTKEVIWKYQQDNKPDDKPKLEVASW-QEEVEGKQVTRYAFI  838
              V++ +      PY I+     + WKY  +N+PDDKPKLEVASW + E  +K +T+YAFI
Sbjct  759   AVEDESSGQQTLPYVINSDGS-IEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFI  817

Query  839   DEAE-----------FKT-------KESLEAAKAKIFEKF------PGLKECKDPTYHYE  874
             DE++           ++        + SL  AK K+++ F       +  ECK++ +HYE
Sbjct  818   DESQHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYE  877

Query  875   VNCLEYRPGTGVPVTGGMYVPQYTQLSLNADTAKAMVQAADLGTNIQRLYQHELYFRTNG  934
             +NCLEYRPG ++P+TGG+YVP+YT++ L    A+AMV+AA+LGTNI+ LYQHE YFRT+G
Sbjct  878   INCLEYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKG  937

Query  935   RKGERLSSVDLERLYQNMSVWLWNDTSYRYEEGKNDELGFKTFTEFLNCYTNDAYTDGTR  994
             + G RL+SVDL+R+YQNMSVWLWND  YRY++ ++DELGFK FT++LNCYT++   + T 
Sbjct  938   KSGARLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTT  997

Query  995   CSADLKKSLVDNNMIYGDGSSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEK  1053
             C+ +LK  L +  MIY++ S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IKVDV K
Sbjct  998   CPEELKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRK  1057

Query  1054  YPGAVSVGGEEVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIKSNANV-PVTVTVAL  1112
             YPG V+  +     T+ + +N + WFAGN Q+TG WA A++  ++  +++  PVT+T+AL
Sbjct  1058  YPGEVTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIAL  1117

Query  1113  ADDLTGREKHEVALNRPPRVTKTYSL--DASGTVKFKVPYGGLIYIKGNSSTNESASFTF  1170
             ADDLTGREKHE++L+RPPR++K++ +  D++    F VPYGGLIY +G +S  +   +TF
Sbjct  1118  ADDLTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNS--QQVKLTF  1175

Query  1171  TGVVKAPFYKDGAWKNDLNSPAPLGELESDAFVYTTPKKNLNASNYTGGLEQFANDLDTF  1230
             +G + AP+Y DG W+N L S AP+GE+ SD+F++T+PK NLNA  Y GG+EQFA+DLD F
Sbjct  1176  SGTIDAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQF  1235

Query  1231  ASSMNDFYGRND--EDGKHRMFTFKNLPGHKHRFTNDVQISIGDAHSGYPVMnssfspns  1288
             ++ +NDFY+R++  +++K+R  T K++P ++H+F NDV IS+G AHSGYPVMN SF  +S
Sbjct  1236  SADLNDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSS  1295

Query  1289  ttlpttplnDWLIWHEVGHNAAETPLTVPGATEVANNVLALYMQDRYLGKMNRVADDITV  1348
              +L T PLN WL+WHEVGHN+AE+P+ V GATEV NN+LALYMQDR  GKM+RV +DI  
Sbjct  1296  RSLNTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRY  1355

Query  1349  APEYLEESNGQAWARGGAGDRLLMYAQLKEWAEKNFDITKWYPEGNLPKFYSEREGMKGW  1408
             A ++++  +G+AW+ GGAG+RL+M+AQLKEWAE +FDI  WY + +LP FY E  G+KGW
Sbjct  1356  AFDFVNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYND-KLPGFYIEESGIKGW  1414

Query  1409  NLFQLMHRKARGDEVSNDKFGGRNYCAESNGNAADTLMLCASWVAQTDLSEFFKKWNPGA  1468
             NLF+LMHR  R ++  + +  G N C  S    +D LMLCAS  AQTDLSEFFK WNPG+
Sbjct  1415  NLFKLMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGS  1474

Query  1469  NAYQLPGASEMSFEGGVSQSAYNTLASLDLPKPKQGPETINKVTEH  1514
             +A+  P+ ++  +EGG++ S+ + + SL L  P++ P +IN VT+H
Sbjct  1475  KAFLYPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQH  1520

23) ECSE_3249 in NC_011415


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1170 bits (4437),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 727/1483 (50%), Positives = 1051/1483 (71%), Gaps = 83/1483 (5%)

Query  94    LTLGGSLRVTGDITCNDESSDGFTFTPGDKVTCVAGNNTTIATFDTQSEAARSLRAVEKV  153
             +TL+G+L+  + + CND+ +  F ++  D+V C   N  +IATF +  +A ++ R  +  
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTI-NGRSIATFTAPFDANKNGRNTDSE  118

Query  154   SFSLEDAQELAGSDNKKSNALSLVTSMNSCPANTEQVCLEFSSVIESKRFDSLYKQ-IDL  212
              +SL  A+E  +S  ++ N   L+ +M +   + +++ L F S +++  F++  ++ +DL
Sbjct  119   VLSLISADEYRDSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDL  176

Query  213   APEEFKKLVNEEVENNAATDKApsthtspvvpvttpgtkpDLNASFVSANAEQFYQYQPS  272
             + ++F   + E + N+   DK PSTH + + P  TPGT ++LN++FVSANAE+   Y P+
Sbjct  177   PKDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPT  236

Query  273   EIILSEGRLVDSQGYGVAGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTF  324
             ++I S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ ISF+IDTF
Sbjct  237   DVIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTF  296

Query  325   ELGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVIN  384
             ELGS R+NK+ + ++ELG +  G N + LIHRY++ ++++  ++PD V ++F+ YPNVIN
Sbjct  297   ELGSTRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKL-IIPDKVTQIFSLYPNVIN  355

Query  385   EIINLSLSNGAT-LDEGEQVVNL-PNEFIEQFKTGQAKEIDTAICA----KTDGCNEARW  438
             E+I+LSL+NG   LD G+   ++ P EF+ QF +G A  ID +I +    K ++    + 
Sbjct  356   EVISLSLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKK-  414

Query  439   FSLTTRNVNDGQIQGVINKLWGVDTNY-----KSVSKFHVFHDSTNFYGSTGNARGQAVV  493
                ++ + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA V
Sbjct  415   --KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAV  472

Query  494   NISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSLVEPENVTRDTATFNLPFI  553
             NI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFI
Sbjct  473   NIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFI  532

Query  554   SLGQVGEGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENVLRYL  613
             SLG++G GKLMV+GN++YNS+L CPNG+SW G V K+G C+L+SD DDM NF  NV+RYL
Sbjct  533   SLGEIGKGKLMVLGNARYNSVLVCPNGFSWGGTV-KNGTCSLSSDRDDMANFFSNVIRYL  591

Query  614   SDDKWTPDAKASMTVGTNLDTVYFKRHGQVTGNSAAFDFHPDFAGISVEHLSSYGDLDPQ  673
                  T  +   + VGTN+  VYFK  GQ  G+ A F++++ F+    ++L+S+ DLD +
Sbjct  592   -----TGSTSNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSK-QTQQLTSFHDLDVN  645

Query  674   EMPLLILNGFEYVTQVGNDPYAIPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMS  733
              +PL+I+N+++Y  +  N PY IPL AD + PKL++ DVTDLI Y+N+GGSVL+ME +++
Sbjct  646   TIPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIIN  705

Query  734   NLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPNRVRQQRATGIWVYERYPAVD  790
                  + S + RLLD+AG++ ++ +SVV ++   + G P+R R QR  GIWV ERY+AV+
Sbjct  706   T----NNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVE  761

Query  791   G------ALPYTIDSKTGEVKWKYQVENKPDDKPKLEVASWLE-DVDGKQETRYAFIDEA  843
             +      +LPY I+S  G + WKY VEN+PDDKPKLEVASW+E + ++K  T+YAFIDE+
Sbjct  762   DESSGQQTLPYVINSD-GSIEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDES  820

Query  844   DH---------------KTE---DSLKAAKEKIFAAF------PGLKECTNPAYHYEVNC  879
             +H               K E    SL  AK+K++ AF       +  EC N+ +HYE+NC
Sbjct  821   QHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINC  880

Query  880   LEYRPGTGVPVTGGMYVPQYTQLSLNADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKG  939
             LEYRPG ++P+TGG+YVP+YT++ L    A+AMV+AA+LGTNI+ LYQHE YFRT+G+ G
Sbjct  881   LEYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSG  940

Query  940   ERLSSVDLERLYQNMSVWLWNDTSYRYEEGKNDELGFKTFTEFLNCYANDAYAGGTKCSA  999
              RL+SVDL+R+YQNMSVWLWND  YRY++ ++DELGFK FT++LNCY+++  +G T C+ 
Sbjct  941   ARLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPE  1000

Query  1000  DLKKSLVDNNMIYGDGSSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPG  1058
             +LK  L +  MIY++ S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IKVDV KYPG
Sbjct  1001  ELKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPG  1060

Query  1059  AVSEEGQNVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIKSNANV-PVTVTVALADD  1117
              V+  +     T+ + +N + WFAGN Q+TG WA A++  ++  +++  PVT+T+ALADD
Sbjct  1061  EVTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADD  1120

Query  1118  LTGREKHEVALNRPPRVTKTYSL--DASGTVKFKVPYGGLIYIKGNSSTNESASFTFTGV  1175
             LTGREKHE++L+RPPR++K++ +  D++    F VPYGGLIY +G +S  +   +TF+G 
Sbjct  1121  LTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNS--QQVKLTFSGT  1178

Query  1176  VKAPFYKDGAWKNDLNSPAPLGELESDAFVYTTPKKNLNASNYTGGLKQFANDLDTFASS  1235
             + AP+Y DG W+N L S AP+GE+ SD+F++T+PK NLNA  Y GG+ QFA+DLD F++ 
Sbjct  1179  IDAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSAD  1238

Query  1236  MNDFYGRDETS--GKHRMFTYKALTGHKHRFTNDVQISIGDAHSGYPVMNSSFstnsttl  1293
             +NDFY+RDE +  +K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +L
Sbjct  1239  LNDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSL  1298

Query  1294  pttplnDWLIWHEVGHNAAETPLTVPGATEVANNVLALYMQDRYLGKMNRVADDITVAPE  1353
              T PLN WL+WHEVGHN+AE+P+ V GATEV NN+LALYMQDR  GKM+RV +DI  A +
Sbjct  1299  NTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFD  1358

Query  1354  YLEESNGQAWARGGAGDRLLMYAQLKEWAEKNFDIKKWYPDGTPLPEFYSEREGMKGWNL  1413
             +++  +G+AW+ GGAG+RL+M+AQLKEWAE +FDI+ WY D   LP FY E  G+KGWNL
Sbjct  1359  FVNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYND--KLPGFYIEESGIKGWNL  1416

Query  1414  FQLMHRKARGDEVSNDKFGGKNYCAESNGNAADTLMLCASWVAQTDLSEFFKKWNPGANA  1473
             F+LMHR  R ++  + +  G N C  S    +D LMLCAS  AQTDLSEFFK WNPG++A
Sbjct  1417  FKLMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKA  1476

Query  1474  YQLPGATEMSFEGGVSQSAYNTLASLNLPKPKQGPETINKVTE  1516
             +  P+  +  +EGG++ S+ + + SL+L  P++ P +IN VT+
Sbjct  1477  FLYPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQ  1519

24) NRG857_14720 in NC_017634


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1170 bits (4437),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 718/1482 (49%), Positives = 1050/1482 (71%), Gaps = 81/1482 (5%)

Query  50    LTLGGSQRVTGAT-CNGESSDGFTFTPGNTVSCVVGSTTIATFNTQSEAARSLRAVDKVS  108
             +TL+G+ +  ++  CN++ +  F ++  + V C + + +IATF +  +A ++ R  D   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  109   FSLEDAQELANSENKKTNAISLVTSSDSCPADAEQLCLTFSSVVDRARFEKLYKQ-IDLA  167
             +SL  A+E  +S  ++ N   L+ +  +   +++++ L F S +D   FE+  ++ +DL+
Sbjct  120   LSLISADEYRDSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDLP  177

Query  168   TDNFSKLVNEEVENNAATDKApsthtstvvpvttEGTKPDLNASFVSANAEQFYQYQPTE  227
              D+F   + E + N+   DK PSTH + + P  T GT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTD  237

Query  228   IILSEGQLVDSLGNGVAGVDYYTNSGRGVTD--------ENGKFSFSWGETISFGIDTFE  279
             +I S G+L+DS G  + GV Y++N+ RG+T+        ++G F FSWG+ ISF+IDTFE
Sbjct  238   VIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFE  297

Query  280   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVINE  339
             LGS R+NK+ + ++ELG +  G N + LIHRY++ ++++  ++PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKL-IIPDKVTQIFSLYPNVINE  356

Query  340   IINLSLSNGAT-LDEGDQNV-VLPNEFIEQFKTGQAKEIDTAICA----KTDGCNEARWF  393
             +I+LSL+NG   LD GD +  ++P EF+ QF +G A  ID +I +    K ++    +  
Sbjct  357   VISLSLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKK--  414

Query  394   SLTTRNVNDGQIQGVINKLWGVDTNYQS-----VSKFHVFHDSTNFYGSTGNARGQAVVN  448
               ++ + + +QIQ++INKLWG     Q+     V +FH+FHDSTNFYGSTG+AR+QA VN
Sbjct  415   -KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVN  473

Query  449   ISNSAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVQPENVTRDTATFNLPFIS  508
             I+NSAFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFIS
Sbjct  474   IANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFIS  533

Query  509   LGQVGEGKLMVIGNPHYNSILRCPNGYSWGGGVNSKGECTLSGDSDDMKHFMQNVLRYLS  568
             LG++G GKLMV+GN++YNS+L CPNG+SWGG V+ +G C+LS+D DDM +F  NV+RYL+
Sbjct  534   LGEIGKGKLMVLGNARYNSVLVCPNGFSWGGTVK-NGTCSLSSDRDDMANFFSNVIRYLT  592

Query  569   NDIWQPNTKSIMTVGTNLENVYFKKAGQVLGNSAPFAFHEDFTGITVKQLTSYGDLNPEE  628
                   +T + + VGTN+ +VYFK +GQ +G+ A F ++  F+  T +QLTS+ DL+ + 
Sbjct  593   G-----STSNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSKQT-QQLTSFHDLDVNT  646

Query  629   IPLLILNGFEYVTQWSGDPYAVPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMSN  688
             IPL+I+N+++Y  +    PY +PL AD + PKL++ DVTDLI Y+N+GGSVL+ME +++ 
Sbjct  647   IPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIINT  706

Query  689   LKEESASSFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQRRATGIWVYERYPAADG  745
                 + S + RLLD+AG++ ++ +SVV ++   + G PDR R +R  GIWV ERY+A ++
Sbjct  707   ----NNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVED  762

Query  746   AQP-----PYTIDPNTGEVTWKYQQDNKPDDKPKLEVASW-QEEVEGKQVTRYAFIDEAE  799
               +     PY I+++ G + WKY  +N+PDDKPKLEVASW + E  +K +T+YAFIDE++
Sbjct  763   ESSGQQTLPYVINSD-GSIEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDESQ  821

Query  800   Y------------------TTEESLEAAKAKIFEKF------PGLQECKDSTYHYEINCL  835
                                  + SL  AK K+++ F       +  ECK+S +HYEINCL
Sbjct  822   HWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINCL  881

Query  836   ERRPGTDVPVTGGMYVPRYTQLNLDADTAKAMVQAADLGTNIQRLYQHELYFRTKGSKGE  895
             E RPG  +P+TGG+YVPRYT+++L+   A+AMV+AA+LGTNI+ LYQHE YFRTKG  G 
Sbjct  882   EYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSGA  941

Query  896   RLNSVDLERLYQNMSVWLWNDTKYRYEEGKEDELGFKTFTEFLNCYANDAYAGGTKCSAD  955
             RLNSVDL+R+YQNMSVWLWND  YRY++ + DELGFK FT++LNCY+++  +G T C+ +
Sbjct  942   RLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPEE  1001

Query  956   LKKSLVDNNMIYGDGSSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPGA  1014
             LK  L +  MIY++ S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IKVDV KYPG 
Sbjct  1002  LKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPGE  1061

Query  1015  VSVGGEEVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIKSNANV-PVTVTVALADDL  1073
             V+  +     T+ + +N + WFAGN Q+TG WA A++  ++  +++  PVT+T+ALADDL
Sbjct  1062  VTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADDL  1121

Query  1074  TGREKHEVALNRPPRVTKTYSL--DASGTVKFKVPYGGLIYIKGNSSTNESASFTFTGVV  1131
             TGREKHE++L+RPPR++K++ +  D++    F VPYGGLIY +G +S  +   +TF+G +
Sbjct  1122  TGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNS--QQVKLTFSGTI  1179

Query  1132  KAPFYKDGAWKNDLNSPAPLGELESASFVYTTPKKNLNASNYTGGLDQFAKDLDTFASSM  1191
              AP+Y DG W+N L S AP+GE+ S +F++T+PK NLNA  Y GG++QFAKDLD F++ +
Sbjct  1180  DAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADL  1239

Query  1192  NDFYGRND--EDGKHRMFTYKNLTGHKHRFTNDVQISIGDAHSGYPVMNSSFstnsttlp  1249
             NDFY+R++  +++K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +L 
Sbjct  1240  NDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLN  1299

Query  1250  ttplnDWLIWHEVGHNAAETPLNVPGATEVANNVLALYMQDRYLGKMNRVADDITVAPEY  1309
             T PLN WL+WHEVGHN+AE+P+NV GATEV NN+LALYMQDR  GKM+RV +DI  A ++
Sbjct  1300  TMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFDF  1359

Query  1310  LEESNGQAWARGGAGDRLLMYAQLKEWAEKNFDIKQWYPEGDLPKFYSDRKGMKGWNLFQ  1369
             ++  +G+AW+ GGAG+RL+M+AQLKEWAE +FDI++WY +  LP FY +  G+KGWNLF+
Sbjct  1360  VNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYND-KLPGFYIEESGIKGWNLFK  1418

Query  1370  LMHRKARGDDVSNDKFGGRNYCAESNGNAADTLMLCASWVAQADLSEFFKKWNPGANAYQ  1429
             LMHR  R ++  + +  G N C  S    +D LMLCAS  AQ+DLSEFFK WNPG++A+ 
Sbjct  1419  LMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKAFL  1478

Query  1430  LPGASEMSFEGGVSQSAYNTLASLKLPKPEQGPETINKVTEH  1471
              P+ ++  +EGG++ S+ + + SLKL  P++ P +IN VT+H
Sbjct  1479  YPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQH  1520

25) yghJ in NC_011993


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1169 bits (4432),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 718/1482 (49%), Positives = 1050/1482 (71%), Gaps = 81/1482 (5%)

Query  94    LTLGGSQRVTGAT-CNGESSDGFTFTPGNTVSCVVGSTTIATFNTQSEAARSLRAVDKVS  152
             +TL+G+ +  ++  CN++ +  F ++  + V C + + +IATF +  +A ++ R  D   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  153   FSLEDAQELANSENKKTNAISLVTSSDSCPADAEQLCLTFSSVVDRARFEKLYKQ-IDLA  211
             +SL  A+E  +S  ++ N   L+ +  +   +++++ L F S +D   FE+  ++ +DL+
Sbjct  120   LSLISADEYRDSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDLP  177

Query  212   TDNFSKLVNEEVENNAATDKApsthtstvvpvttEGTKPDLNASFVSANAEQFYQYQPTE  271
              D+F   + E + N+   DK PSTH + + P  T GT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTD  237

Query  272   IILSEGQLVDSLGNGVAGVDYYTNSGRGVTD--------ENGKFSFSWGETISFGIDTFE  323
             +I S G+L+DS G  + GV Y++N+ RG+T+        ++G F FSWG+ ISF+IDTFE
Sbjct  238   VIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFE  297

Query  324   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVINE  383
             LGS R+NK+ + ++ELG +  G N + LIHRY++ ++++  ++PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKL-IIPDKVTQIFSLYPNVINE  356

Query  384   IINLSLSNGAT-LDEGDQNV-VLPNEFIEQFKTGQAKEIDTAICA----KTDGCNEARWF  437
             +I+LSL+NG   LD GD +  ++P EF+ QF +G A  ID +I +    K ++    +  
Sbjct  357   VISLSLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKK--  414

Query  438   SLTTRNVNDGQIQGVINKLWGVDTNYQS-----VSKFHVFHDSTNFYGSTGNARGQAVVN  492
               ++ + + +QIQ++INKLWG     Q+     V +FH+FHDSTNFYGSTG+AR+QA VN
Sbjct  415   -KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVN  473

Query  493   ISNSAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVQPENVTRDTATFNLPFIS  552
             I+NSAFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFIS
Sbjct  474   IANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFIS  533

Query  553   LGQVGEGKLMVIGNPHYNSILRCPNGYSWGGGVNSKGECTLSGDSDDMKHFMQNVLRYLS  612
             LG++G GKLMV+GN++YNS+L CPNG+SWGG V+ +G C+LS+D DDM +F  NV+RYL+
Sbjct  534   LGEIGKGKLMVLGNARYNSVLVCPNGFSWGGTVK-NGTCSLSSDRDDMANFFSNVIRYLT  592

Query  613   NDIWQPNTKSIMTVGTNLENVYFKKAGQVLGNSAPFAFHEDFTGITVKQLTSYGDLNPEE  672
                   +T + + VGTN+ +VYFK +GQ +G+ A F ++  F+  T +QLTS+ DL+ + 
Sbjct  593   G-----STSNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSKQT-QQLTSFHDLDVNT  646

Query  673   IPLLILNGFEYVTQWSGDPYAVPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMSN  732
             IPL+I+N+++Y  +    PY +PL AD + PKL++ DVTDLI Y+N+GGSVL+ME +++ 
Sbjct  647   IPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIINT  706

Query  733   LKEESASSFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQRRATGIWVYERYPAADG  789
                 + S + RLLD+AG++ ++ +SVV ++   + G PDR R +R  GIWV ERY+A ++
Sbjct  707   ----NNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVED  762

Query  790   AQP-----PYTIDPNTGEVTWKYQQDNKPDDKPKLEVASW-QEEVEGKQVTRYAFIDEAE  843
               +     PY I+++ G + WKY  +N+PDDKPKLEVASW + E  +K +T+YAFIDE++
Sbjct  763   ESSGQQTLPYVINSD-GSIEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDESQ  821

Query  844   Y------------------TTEESLEAAKAKIFEKF------PGLQECKDSTYHYEINCL  879
                                  + SL  AK K+++ F       +  ECK+S +HYEINCL
Sbjct  822   HWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINCL  881

Query  880   ERRPGTDVPVTGGMYVPRYTQLNLDADTAKAMVQAADLGTNIQRLYQHELYFRTKGSKGE  939
             E RPG  +P+TGG+YVPRYT+++L+   A+AMV+AA+LGTNI+ LYQHE YFRTKG  G 
Sbjct  882   EYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSGA  941

Query  940   RLNSVDLERLYQNMSVWLWNDTKYRYEEGKEDELGFKTFTEFLNCYANDAYAGGTKCSAD  999
             RLNSVDL+R+YQNMSVWLWND  YRY++ + DELGFK FT++LNCY+++  +G T C+ +
Sbjct  942   RLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPEE  1001

Query  1000  LKKSLVDNNMIYGDGSSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPGA  1058
             LK  L +  MIY++ S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IKVDV KYPG 
Sbjct  1002  LKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPGE  1061

Query  1059  VSVGGEEVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIKSNANV-PVTVTVALADDL  1117
             V+  +     T+ + +N + WFAGN Q+TG WA A++  ++  +++  PVT+T+ALADDL
Sbjct  1062  VTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADDL  1121

Query  1118  TGREKHEVALNRPPRVTKTYSL--DASGTVKFKVPYGGLIYIKGNSSTNESASFTFTGVV  1175
             TGREKHE++L+RPPR++K++ +  D++    F VPYGGLIY +G +S  +   +TF+G +
Sbjct  1122  TGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNS--QQVKLTFSGTI  1179

Query  1176  KAPFYKDGAWKNDLNSPAPLGELESASFVYTTPKKNLNASNYTGGLDQFAKDLDTFASSM  1235
              AP+Y DG W+N L S AP+GE+ S +F++T+PK NLNA  Y GG++QFAKDLD F++ +
Sbjct  1180  DAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADL  1239

Query  1236  NDFYGRND--EDGKHRMFTYKNLTGHKHRFTNDVQISIGDAHSGYPVMNSSFstnsttlp  1293
             NDFY+R++  +++K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +L 
Sbjct  1240  NDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLN  1299

Query  1294  ttplnDWLIWHEVGHNAAETPLNVPGATEVANNVLALYMQDRYLGKMNRVADDITVAPEY  1353
             T PLN WL+WHEVGHN+AE+P+NV GATEV NN+LALYMQDR  GKM+RV +DI  A ++
Sbjct  1300  TMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFDF  1359

Query  1354  LEESNGQAWARGGAGDRLLMYAQLKEWAEKNFDIKQWYPEGDLPKFYSDRKGMKGWNLFQ  1413
             ++  +G+AW+ GGAG+RL+M+AQLKEWAE +FDI++WY +  LP FY +  G+KGWNLF+
Sbjct  1360  VNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYND-KLPGFYIEESGIKGWNLFK  1418

Query  1414  LMHRKARGDDVSNDKFGGRNYCAESNGNAADTLMLCASWVAQADLSEFFKKWNPGANAYQ  1473
             LMHR  R ++  + +  G N C  S    +D LMLCAS  AQ+DLSEFFK WNPG++A+ 
Sbjct  1419  LMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKAFL  1478

Query  1474  LPGASEMSFEGGVSQSAYNTLASLKLPKPEQGPETINKVTEH  1515
              P+ ++  +EGG++ S+ + + SLKL  P++ P +IN VT+H
Sbjct  1479  YPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQH  1520

26) yghJ in NC_017638


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1166 bits (4422),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 721/1484 (49%), Positives = 1051/1484 (71%), Gaps = 85/1484 (5%)

Query  50    LTLGGSQRVTGAT-CNGESSDGFTFKPGEDVTCVAGNTTIATFNTQSEAARSLRAVEKVS  108
             +TL+G+ +  ++  CN++ +  F +   ++V C     +IATF +  +A ++ R  +   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  109   FSLEDAQELAGSDDKKSNAVSLVTSSNSCPANTEQVCLTFSSVIESKRFDSLYKQ-IDLA  167
             +SL  A+E  +S  ++ N   L+ +  +   + +++ L F S +++  F++  ++ +DL+
Sbjct  120   LSLISADEYRDSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDLP  177

Query  168   PEEFKKLVNEEVENNAATDKApsthtspvvpvttpgtkpDLNASFVSANAEQFYQYQPTE  227
              ++F   + E + N+   DK PSTH + + P  TPGT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTD  237

Query  228   IILSEGRLVDSQGYGVAGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTFE  279
             +I S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ ISF+IDTFE
Sbjct  238   VIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFE  297

Query  280   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVINE  339
             LGS R+NK+ + ++ELG +  G N + LIHRY++ ++++  ++PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKL-IIPDKVTQIFSLYPNVINE  356

Query  340   IINLSLSNGAT---LGEGEQVVNLPNEFIEQFNTGQAKEIDTAICA----KTDGCNEARW  392
             +I+LSL+NG     +G+G   + +P EF+ QF++G A  ID +I +    K ++    + 
Sbjct  357   VISLSLPNGDIELDIGDGKTQI-VPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKK-  414

Query  393   FSLTTRNVNDGQIQGVINKLWGVDTNY-----KSVSKFHVFHDSTNFYGSTGNARGQAVV  447
                ++ + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA V
Sbjct  415   --KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAV  472

Query  448   NISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSLVEPENVTRDTATFNLPFI  507
             NI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFI
Sbjct  473   NIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFI  532

Query  508   SLGQVGEGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENVLRYL  567
             SLG++G GKLMV+GN++YNS+L CPNG+SW G V K+G C+L+SD DDM NF  NV+RYL
Sbjct  533   SLGEIGKGKLMVLGNARYNSVLVCPNGFSWGGTV-KNGTCSLSSDRDDMANFFSNVIRYL  591

Query  568   SDDKWKPDAKASMTVGTNLDTVYFKRHGQVTGNSAAFDFHPDFAGISVEHLSSYGDLDPQ  627
             ++      +   + VGTN+  VYFK  GQ  G+ A F++++ F+    ++L+S+ DLD +
Sbjct  592   TGS-----TSNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSK-QTQQLTSFHDLDVN  645

Query  628   EMPLLILNGFEYVTQVGNDPYAIPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMS  687
              +PL+I+N+++Y  +  N PY IPL AD + PKL++ DVTDLI Y+N+GGSVL+ME +++
Sbjct  646   TIPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIIN  705

Query  688   NLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPNRVRQQRATGIWVYERYPAVD  744
                  + S + RLLD+AG++ ++ +SVV ++   + G P+R R QR  GIWV ERY+AV+
Sbjct  706   T----NNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVE  761

Query  745   G------ALPYTIDSKTGEVKWKYQVENKPDDKPKLEVASWLE-DVDGKQETRYAFIDEA  797
             +      +LPY I+S  G + WKY VEN+PDDKPKLEVASW+E + ++K  T+YAFIDE+
Sbjct  762   DESSGQQTLPYVINSD-GSIEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDES  820

Query  798   DH---------------KTE---DSLKAAKEKIFAAF------PGLKECTNPAYHYEVNC  833
             +H               K E    SL  AK+K++ AF       +  EC N+ +HYE+NC
Sbjct  821   QHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINC  880

Query  834   LEYRPGTGVPVTGGMYVPQYTQLSLNADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKG  893
             LEYRPG ++P+TGG+YVP+YT++ L    A+AMV+AA+LGTNI+ LYQHE YFRT+G+ G
Sbjct  881   LEYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSG  940

Query  894   ERLSSVDLERLYQNMSVWLWNDTSYRYEEGKNDELGFKTFTEFLNCYANDAYAGGTKCSA  953
              RL+SVDL+R+YQNMSVWLWND  YRY++ ++DELGFK FT++LNCY+++  +G T C+ 
Sbjct  941   ARLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPE  1000

Query  954   DLKKSLVDNNMIYGDGSSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPG  1012
             +LK  L +  MIY++ S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IKVDV KYPG
Sbjct  1001  ELKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPG  1060

Query  1013  AVSEEGQNVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIKSNANV-PVTVTVALADD  1071
              V+  +     T+ + +N + WFAGN Q+TG WA A++  ++  +++  PVT+T+ALADD
Sbjct  1061  EVTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADD  1120

Query  1072  LTGREKHEVALNRPPRVTKTYSL--DASGTVKFKVPYGGLIYIKGNSSTNESASFTFTGV  1129
             LTGREKHE++L+RPPR++K++ +  D++    F VPYGGLIY +G +S  +   +TF+G 
Sbjct  1121  LTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNS--QQVKLTFSGT  1178

Query  1130  VKAPFYKDGAWKNDLNSPAPLGELESDAFVYTTPKKNLNASNYTGGLEQFANDLDTFASS  1189
             + AP+Y DG W+N L S AP+GE+ SD+F++T+PK NLNA  Y GG+EQFA+DLD F++ 
Sbjct  1179  IDAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSAD  1238

Query  1190  MNDFYGRD--SEDGKHRMFTYKNLPGHKHRFTNDVQISIGDAHSGYPVMnssfspnsttl  1247
             +NDFY+RD  ++++K+R  T K++P ++H+F NDV IS+G AHSGYPVMN SF  +S +L
Sbjct  1239  LNDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSL  1298

Query  1248  pttplnDWLIWHEVGHNAAETPLTVPGATEVANNVLALYMQDRYLGKMNRVADDITVAPE  1307
              T PLN WL+WHEVGHN+AE+P+ V GATEV NN+LALYMQDR  GKM+RV +DI  A +
Sbjct  1299  NTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFD  1358

Query  1308  YLEESNNQAWARGGAGDRLLMYAQLKEWAEKNFDIKKWYPDGTPLPEFYSEREGMKGWNL  1367
             +++  + +AW+ GGAG+RL+M+AQLKEWAE +FDI+ WY D   LP FY E  G+KGWNL
Sbjct  1359  FVNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYND--KLPGFYIEESGIKGWNL  1416

Query  1368  FQLMHRKARGDEVSNDKFGGKNYCAESNGNAADTLMLCASWVAQTDLSEFFKKWNPGANA  1427
             F+LMHR  R ++  + +  G N C  S    +D LMLCAS  AQTDLSEFFK WNPG++A
Sbjct  1417  FKLMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKA  1476

Query  1428  YQLPGASEMSFEGGVSQSAYNTLASLDLPKPEQGPETINQVTEH  1471
             +  P+ ++  +EGG++ S+ + + SL L  P++ P +IN VT+H
Sbjct  1477  FLYPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQH  1520

27) ECBD_0765 in NC_012947


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1165 bits (4420),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 721/1484 (49%), Positives = 1051/1484 (71%), Gaps = 85/1484 (5%)

Query  94    LTLGGSQRVTGAT-CNGESSDGFTFKPGEDVTCVAGNTTIATFNTQSEAARSLRAVEKVS  152
             +TL+G+ +  ++  CN++ +  F +   ++V C     +IATF +  +A ++ R  +   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  153   FSLEDAQELAGSDDKKSNAVSLVTSSNSCPANTEQVCLTFSSVIESKRFDSLYKQ-IDLA  211
             +SL  A+E  +S  ++ N   L+ +  +   + +++ L F S +++  F++  ++ +DL+
Sbjct  120   LSLISADEYRDSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDLP  177

Query  212   PEEFKKLVNEEVENNAATDKApsthtspvvpvttpgtkpDLNASFVSANAEQFYQYQPTE  271
              ++F   + E + N+   DK PSTH + + P  TPGT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTD  237

Query  272   IILSEGRLVDSQGYGVAGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTFE  323
             +I S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ ISF+IDTFE
Sbjct  238   VIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFE  297

Query  324   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVINE  383
             LGS R+NK+ + ++ELG +  G N + LIHRY++ ++++  ++PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKL-IIPDKVTQIFSLYPNVINE  356

Query  384   IINLSLSNGAT---LGEGEQVVNLPNEFIEQFNTGQAKEIDTAICA----KTDGCNEARW  436
             +I+LSL+NG     +G+G   + +P EF+ QF++G A  ID +I +    K ++    + 
Sbjct  357   VISLSLPNGDIELDIGDGKTQI-VPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKK-  414

Query  437   FSLTTRNVNDGQIQGVINKLWGVDTNY-----KSVSKFHVFHDSTNFYGSTGNARGQAVV  491
                ++ + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA V
Sbjct  415   --KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAV  472

Query  492   NISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSLVEPENVTRDTATFNLPFI  551
             NI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFI
Sbjct  473   NIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFI  532

Query  552   SLGQVGEGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENVLRYL  611
             SLG++G GKLMV+GN++YNS+L CPNG+SW G V K+G C+L+SD DDM NF  NV+RYL
Sbjct  533   SLGEIGKGKLMVLGNARYNSVLVCPNGFSWGGTV-KNGTCSLSSDRDDMANFFSNVIRYL  591

Query  612   SDDKWKPDAKASMTVGTNLDTVYFKRHGQVTGNSAAFDFHPDFAGISVEHLSSYGDLDPQ  671
             ++      +   + VGTN+  VYFK  GQ  G+ A F++++ F+    ++L+S+ DLD +
Sbjct  592   TGS-----TSNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSK-QTQQLTSFHDLDVN  645

Query  672   EMPLLILNGFEYVTQVGNDPYAIPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMS  731
              +PL+I+N+++Y  +  N PY IPL AD + PKL++ DVTDLI Y+N+GGSVL+ME +++
Sbjct  646   TIPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIIN  705

Query  732   NLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPNRVRQQRATGIWVYERYPAVD  788
                  + S + RLLD+AG++ ++ +SVV ++   + G P+R R QR  GIWV ERY+AV+
Sbjct  706   T----NNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVE  761

Query  789   G------ALPYTIDSKTGEVKWKYQVENKPDDKPKLEVASWLE-DVDGKQETRYAFIDEA  841
             +      +LPY I+S  G + WKY VEN+PDDKPKLEVASW+E + ++K  T+YAFIDE+
Sbjct  762   DESSGQQTLPYVINSD-GSIEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDES  820

Query  842   DH---------------KTE---DSLKAAKEKIFAAF------PGLKECTNPAYHYEVNC  877
             +H               K E    SL  AK+K++ AF       +  EC N+ +HYE+NC
Sbjct  821   QHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINC  880

Query  878   LEYRPGTGVPVTGGMYVPQYTQLSLNADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKG  937
             LEYRPG ++P+TGG+YVP+YT++ L    A+AMV+AA+LGTNI+ LYQHE YFRT+G+ G
Sbjct  881   LEYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSG  940

Query  938   ERLSSVDLERLYQNMSVWLWNDTSYRYEEGKNDELGFKTFTEFLNCYANDAYAGGTKCSA  997
              RL+SVDL+R+YQNMSVWLWND  YRY++ ++DELGFK FT++LNCY+++  +G T C+ 
Sbjct  941   ARLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPE  1000

Query  998   DLKKSLVDNNMIYGDGSSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPG  1056
             +LK  L +  MIY++ S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IKVDV KYPG
Sbjct  1001  ELKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPG  1060

Query  1057  AVSEEGQNVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIKSNANV-PVTVTVALADD  1115
              V+  +     T+ + +N + WFAGN Q+TG WA A++  ++  +++  PVT+T+ALADD
Sbjct  1061  EVTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADD  1120

Query  1116  LTGREKHEVALNRPPRVTKTYSL--DASGTVKFKVPYGGLIYIKGNSSTNESASFTFTGV  1173
             LTGREKHE++L+RPPR++K++ +  D++    F VPYGGLIY +G +S  +   +TF+G 
Sbjct  1121  LTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNS--QQVKLTFSGT  1178

Query  1174  VKAPFYKDGAWKNDLNSPAPLGELESDAFVYTTPKKNLNASNYTGGLEQFANDLDTFASS  1233
             + AP+Y DG W+N L S AP+GE+ SD+F++T+PK NLNA  Y GG+EQFA+DLD F++ 
Sbjct  1179  IDAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSAD  1238

Query  1234  MNDFYGRD--SEDGKHRMFTYKNLPGHKHRFTNDVQISIGDAHSGYPVMnssfspnsttl  1291
             +NDFY+RD  ++++K+R  T K++P ++H+F NDV IS+G AHSGYPVMN SF  +S +L
Sbjct  1239  LNDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSL  1298

Query  1292  pttplnDWLIWHEVGHNAAETPLTVPGATEVANNVLALYMQDRYLGKMNRVADDITVAPE  1351
              T PLN WL+WHEVGHN+AE+P+ V GATEV NN+LALYMQDR  GKM+RV +DI  A +
Sbjct  1299  NTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFD  1358

Query  1352  YLEESNNQAWARGGAGDRLLMYAQLKEWAEKNFDIKKWYPDGTPLPEFYSEREGMKGWNL  1411
             +++  + +AW+ GGAG+RL+M+AQLKEWAE +FDI+ WY D   LP FY E  G+KGWNL
Sbjct  1359  FVNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYND--KLPGFYIEESGIKGWNL  1416

Query  1412  FQLMHRKARGDEVSNDKFGGKNYCAESNGNAADTLMLCASWVAQTDLSEFFKKWNPGANA  1471
             F+LMHR  R ++  + +  G N C  S    +D LMLCAS  AQTDLSEFFK WNPG++A
Sbjct  1417  FKLMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKA  1476

Query  1472  YQLPGASEMSFEGGVSQSAYNTLASLDLPKPEQGPETINQVTEH  1515
             +  P+ ++  +EGG++ S+ + + SL L  P++ P +IN VT+H
Sbjct  1477  FLYPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQH  1520

28) yghJ in NC_012759


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1165 bits (4420),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 721/1484 (49%), Positives = 1051/1484 (71%), Gaps = 85/1484 (5%)

Query  94    LTLGGSQRVTGAT-CNGESSDGFTFKPGEDVTCVAGNTTIATFNTQSEAARSLRAVEKVS  152
             +TL+G+ +  ++  CN++ +  F +   ++V C     +IATF +  +A ++ R  +   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  153   FSLEDAQELAGSDDKKSNAVSLVTSSNSCPANTEQVCLTFSSVIESKRFDSLYKQ-IDLA  211
             +SL  A+E  +S  ++ N   L+ +  +   + +++ L F S +++  F++  ++ +DL+
Sbjct  120   LSLISADEYRDSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDLP  177

Query  212   PEEFKKLVNEEVENNAATDKApsthtspvvpvttpgtkpDLNASFVSANAEQFYQYQPTE  271
              ++F   + E + N+   DK PSTH + + P  TPGT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTD  237

Query  272   IILSEGRLVDSQGYGVAGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTFE  323
             +I S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ ISF+IDTFE
Sbjct  238   VIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFE  297

Query  324   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVINE  383
             LGS R+NK+ + ++ELG +  G N + LIHRY++ ++++  ++PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKL-IIPDKVTQIFSLYPNVINE  356

Query  384   IINLSLSNGAT---LGEGEQVVNLPNEFIEQFNTGQAKEIDTAICA----KTDGCNEARW  436
             +I+LSL+NG     +G+G   + +P EF+ QF++G A  ID +I +    K ++    + 
Sbjct  357   VISLSLPNGDIELDIGDGKTQI-VPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKK-  414

Query  437   FSLTTRNVNDGQIQGVINKLWGVDTNY-----KSVSKFHVFHDSTNFYGSTGNARGQAVV  491
                ++ + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA V
Sbjct  415   --KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAV  472

Query  492   NISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSLVEPENVTRDTATFNLPFI  551
             NI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFI
Sbjct  473   NIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFI  532

Query  552   SLGQVGEGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENVLRYL  611
             SLG++G GKLMV+GN++YNS+L CPNG+SW G V K+G C+L+SD DDM NF  NV+RYL
Sbjct  533   SLGEIGKGKLMVLGNARYNSVLVCPNGFSWGGTV-KNGTCSLSSDRDDMANFFSNVIRYL  591

Query  612   SDDKWKPDAKASMTVGTNLDTVYFKRHGQVTGNSAAFDFHPDFAGISVEHLSSYGDLDPQ  671
             ++      +   + VGTN+  VYFK  GQ  G+ A F++++ F+    ++L+S+ DLD +
Sbjct  592   TGS-----TSNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSK-QTQQLTSFHDLDVN  645

Query  672   EMPLLILNGFEYVTQVGNDPYAIPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMS  731
              +PL+I+N+++Y  +  N PY IPL AD + PKL++ DVTDLI Y+N+GGSVL+ME +++
Sbjct  646   TIPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIIN  705

Query  732   NLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPNRVRQQRATGIWVYERYPAVD  788
                  + S + RLLD+AG++ ++ +SVV ++   + G P+R R QR  GIWV ERY+AV+
Sbjct  706   T----NNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVE  761

Query  789   G------ALPYTIDSKTGEVKWKYQVENKPDDKPKLEVASWLE-DVDGKQETRYAFIDEA  841
             +      +LPY I+S  G + WKY VEN+PDDKPKLEVASW+E + ++K  T+YAFIDE+
Sbjct  762   DESSGQQTLPYVINSD-GSIEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDES  820

Query  842   DH---------------KTE---DSLKAAKEKIFAAF------PGLKECTNPAYHYEVNC  877
             +H               K E    SL  AK+K++ AF       +  EC N+ +HYE+NC
Sbjct  821   QHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINC  880

Query  878   LEYRPGTGVPVTGGMYVPQYTQLSLNADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKG  937
             LEYRPG ++P+TGG+YVP+YT++ L    A+AMV+AA+LGTNI+ LYQHE YFRT+G+ G
Sbjct  881   LEYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSG  940

Query  938   ERLSSVDLERLYQNMSVWLWNDTSYRYEEGKNDELGFKTFTEFLNCYANDAYAGGTKCSA  997
              RL+SVDL+R+YQNMSVWLWND  YRY++ ++DELGFK FT++LNCY+++  +G T C+ 
Sbjct  941   ARLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPE  1000

Query  998   DLKKSLVDNNMIYGDGSSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPG  1056
             +LK  L +  MIY++ S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IKVDV KYPG
Sbjct  1001  ELKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPG  1060

Query  1057  AVSEEGQNVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIKSNANV-PVTVTVALADD  1115
              V+  +     T+ + +N + WFAGN Q+TG WA A++  ++  +++  PVT+T+ALADD
Sbjct  1061  EVTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADD  1120

Query  1116  LTGREKHEVALNRPPRVTKTYSL--DASGTVKFKVPYGGLIYIKGNSSTNESASFTFTGV  1173
             LTGREKHE++L+RPPR++K++ +  D++    F VPYGGLIY +G +S  +   +TF+G 
Sbjct  1121  LTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNS--QQVKLTFSGT  1178

Query  1174  VKAPFYKDGAWKNDLNSPAPLGELESDAFVYTTPKKNLNASNYTGGLEQFANDLDTFASS  1233
             + AP+Y DG W+N L S AP+GE+ SD+F++T+PK NLNA  Y GG+EQFA+DLD F++ 
Sbjct  1179  IDAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSAD  1238

Query  1234  MNDFYGRD--SEDGKHRMFTYKNLPGHKHRFTNDVQISIGDAHSGYPVMnssfspnsttl  1291
             +NDFY+RD  ++++K+R  T K++P ++H+F NDV IS+G AHSGYPVMN SF  +S +L
Sbjct  1239  LNDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSL  1298

Query  1292  pttplnDWLIWHEVGHNAAETPLTVPGATEVANNVLALYMQDRYLGKMNRVADDITVAPE  1351
              T PLN WL+WHEVGHN+AE+P+ V GATEV NN+LALYMQDR  GKM+RV +DI  A +
Sbjct  1299  NTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFD  1358

Query  1352  YLEESNNQAWARGGAGDRLLMYAQLKEWAEKNFDIKKWYPDGTPLPEFYSEREGMKGWNL  1411
             +++  + +AW+ GGAG+RL+M+AQLKEWAE +FDI+ WY D   LP FY E  G+KGWNL
Sbjct  1359  FVNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYND--KLPGFYIEESGIKGWNL  1416

Query  1412  FQLMHRKARGDEVSNDKFGGKNYCAESNGNAADTLMLCASWVAQTDLSEFFKKWNPGANA  1471
             F+LMHR  R ++  + +  G N C  S    +D LMLCAS  AQTDLSEFFK WNPG++A
Sbjct  1417  FKLMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKA  1476

Query  1472  YQLPGASEMSFEGGVSQSAYNTLASLDLPKPEQGPETINQVTEH  1515
             +  P+ ++  +EGG++ S+ + + SL L  P++ P +IN VT+H
Sbjct  1477  FLYPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQH  1520

29) EcDH1_0723 in NC_017625


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1165 bits (4420),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 721/1484 (49%), Positives = 1051/1484 (71%), Gaps = 85/1484 (5%)

Query  94    LTLGGSQRVTGAT-CNGESSDGFTFKPGEDVTCVAGNTTIATFNTQSEAARSLRAVEKVS  152
             +TL+G+ +  ++  CN++ +  F +   ++V C     +IATF +  +A ++ R  +   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  153   FSLEDAQELAGSDDKKSNAVSLVTSSNSCPANTEQVCLTFSSVIESKRFDSLYKQ-IDLA  211
             +SL  A+E  +S  ++ N   L+ +  +   + +++ L F S +++  F++  ++ +DL+
Sbjct  120   LSLISADEYRDSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDLP  177

Query  212   PEEFKKLVNEEVENNAATDKApsthtspvvpvttpgtkpDLNASFVSANAEQFYQYQPTE  271
              ++F   + E + N+   DK PSTH + + P  TPGT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTD  237

Query  272   IILSEGRLVDSQGYGVAGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTFE  323
             +I S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ ISF+IDTFE
Sbjct  238   VIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFE  297

Query  324   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVINE  383
             LGS R+NK+ + ++ELG +  G N + LIHRY++ ++++  ++PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKL-IIPDKVTQIFSLYPNVINE  356

Query  384   IINLSLSNGAT---LGEGEQVVNLPNEFIEQFNTGQAKEIDTAICA----KTDGCNEARW  436
             +I+LSL+NG     +G+G   + +P EF+ QF++G A  ID +I +    K ++    + 
Sbjct  357   VISLSLPNGDIELDIGDGKTQI-VPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKK-  414

Query  437   FSLTTRNVNDGQIQGVINKLWGVDTNY-----KSVSKFHVFHDSTNFYGSTGNARGQAVV  491
                ++ + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA V
Sbjct  415   --KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAV  472

Query  492   NISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSLVEPENVTRDTATFNLPFI  551
             NI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFI
Sbjct  473   NIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFI  532

Query  552   SLGQVGEGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENVLRYL  611
             SLG++G GKLMV+GN++YNS+L CPNG+SW G V K+G C+L+SD DDM NF  NV+RYL
Sbjct  533   SLGEIGKGKLMVLGNARYNSVLVCPNGFSWGGTV-KNGTCSLSSDRDDMANFFSNVIRYL  591

Query  612   SDDKWKPDAKASMTVGTNLDTVYFKRHGQVTGNSAAFDFHPDFAGISVEHLSSYGDLDPQ  671
             ++      +   + VGTN+  VYFK  GQ  G+ A F++++ F+    ++L+S+ DLD +
Sbjct  592   TGS-----TSNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSK-QTQQLTSFHDLDVN  645

Query  672   EMPLLILNGFEYVTQVGNDPYAIPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMS  731
              +PL+I+N+++Y  +  N PY IPL AD + PKL++ DVTDLI Y+N+GGSVL+ME +++
Sbjct  646   TIPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIIN  705

Query  732   NLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPNRVRQQRATGIWVYERYPAVD  788
                  + S + RLLD+AG++ ++ +SVV ++   + G P+R R QR  GIWV ERY+AV+
Sbjct  706   T----NNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVE  761

Query  789   G------ALPYTIDSKTGEVKWKYQVENKPDDKPKLEVASWLE-DVDGKQETRYAFIDEA  841
             +      +LPY I+S  G + WKY VEN+PDDKPKLEVASW+E + ++K  T+YAFIDE+
Sbjct  762   DESSGQQTLPYVINSD-GSIEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDES  820

Query  842   DH---------------KTE---DSLKAAKEKIFAAF------PGLKECTNPAYHYEVNC  877
             +H               K E    SL  AK+K++ AF       +  EC N+ +HYE+NC
Sbjct  821   QHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINC  880

Query  878   LEYRPGTGVPVTGGMYVPQYTQLSLNADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKG  937
             LEYRPG ++P+TGG+YVP+YT++ L    A+AMV+AA+LGTNI+ LYQHE YFRT+G+ G
Sbjct  881   LEYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSG  940

Query  938   ERLSSVDLERLYQNMSVWLWNDTSYRYEEGKNDELGFKTFTEFLNCYANDAYAGGTKCSA  997
              RL+SVDL+R+YQNMSVWLWND  YRY++ ++DELGFK FT++LNCY+++  +G T C+ 
Sbjct  941   ARLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPE  1000

Query  998   DLKKSLVDNNMIYGDGSSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPG  1056
             +LK  L +  MIY++ S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IKVDV KYPG
Sbjct  1001  ELKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPG  1060

Query  1057  AVSEEGQNVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIKSNANV-PVTVTVALADD  1115
              V+  +     T+ + +N + WFAGN Q+TG WA A++  ++  +++  PVT+T+ALADD
Sbjct  1061  EVTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADD  1120

Query  1116  LTGREKHEVALNRPPRVTKTYSL--DASGTVKFKVPYGGLIYIKGNSSTNESASFTFTGV  1173
             LTGREKHE++L+RPPR++K++ +  D++    F VPYGGLIY +G +S  +   +TF+G 
Sbjct  1121  LTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNS--QQVKLTFSGT  1178

Query  1174  VKAPFYKDGAWKNDLNSPAPLGELESDAFVYTTPKKNLNASNYTGGLEQFANDLDTFASS  1233
             + AP+Y DG W+N L S AP+GE+ SD+F++T+PK NLNA  Y GG+EQFA+DLD F++ 
Sbjct  1179  IDAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSAD  1238

Query  1234  MNDFYGRD--SEDGKHRMFTYKNLPGHKHRFTNDVQISIGDAHSGYPVMnssfspnsttl  1291
             +NDFY+RD  ++++K+R  T K++P ++H+F NDV IS+G AHSGYPVMN SF  +S +L
Sbjct  1239  LNDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSL  1298

Query  1292  pttplnDWLIWHEVGHNAAETPLTVPGATEVANNVLALYMQDRYLGKMNRVADDITVAPE  1351
              T PLN WL+WHEVGHN+AE+P+ V GATEV NN+LALYMQDR  GKM+RV +DI  A +
Sbjct  1299  NTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFD  1358

Query  1352  YLEESNNQAWARGGAGDRLLMYAQLKEWAEKNFDIKKWYPDGTPLPEFYSEREGMKGWNL  1411
             +++  + +AW+ GGAG+RL+M+AQLKEWAE +FDI+ WY D   LP FY E  G+KGWNL
Sbjct  1359  FVNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYND--KLPGFYIEESGIKGWNL  1416

Query  1412  FQLMHRKARGDEVSNDKFGGKNYCAESNGNAADTLMLCASWVAQTDLSEFFKKWNPGANA  1471
             F+LMHR  R ++  + +  G N C  S    +D LMLCAS  AQTDLSEFFK WNPG++A
Sbjct  1417  FKLMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKA  1476

Query  1472  YQLPGASEMSFEGGVSQSAYNTLASLDLPKPEQGPETINQVTEH  1515
             +  P+ ++  +EGG++ S+ + + SL L  P++ P +IN VT+H
Sbjct  1477  FLYPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQH  1520

30) yghJ in NC_000913


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1165 bits (4420),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 721/1484 (49%), Positives = 1051/1484 (71%), Gaps = 85/1484 (5%)

Query  94    LTLGGSQRVTGAT-CNGESSDGFTFKPGEDVTCVAGNTTIATFNTQSEAARSLRAVEKVS  152
             +TL+G+ +  ++  CN++ +  F +   ++V C     +IATF +  +A ++ R  +   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  153   FSLEDAQELAGSDDKKSNAVSLVTSSNSCPANTEQVCLTFSSVIESKRFDSLYKQ-IDLA  211
             +SL  A+E  +S  ++ N   L+ +  +   + +++ L F S +++  F++  ++ +DL+
Sbjct  120   LSLISADEYRDSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDLP  177

Query  212   PEEFKKLVNEEVENNAATDKApsthtspvvpvttpgtkpDLNASFVSANAEQFYQYQPTE  271
              ++F   + E + N+   DK PSTH + + P  TPGT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTD  237

Query  272   IILSEGRLVDSQGYGVAGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTFE  323
             +I S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ ISF+IDTFE
Sbjct  238   VIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFE  297

Query  324   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVINE  383
             LGS R+NK+ + ++ELG +  G N + LIHRY++ ++++  ++PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKL-IIPDKVTQIFSLYPNVINE  356

Query  384   IINLSLSNGAT---LGEGEQVVNLPNEFIEQFNTGQAKEIDTAICA----KTDGCNEARW  436
             +I+LSL+NG     +G+G   + +P EF+ QF++G A  ID +I +    K ++    + 
Sbjct  357   VISLSLPNGDIELDIGDGKTQI-VPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKK-  414

Query  437   FSLTTRNVNDGQIQGVINKLWGVDTNY-----KSVSKFHVFHDSTNFYGSTGNARGQAVV  491
                ++ + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA V
Sbjct  415   --KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAV  472

Query  492   NISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSLVEPENVTRDTATFNLPFI  551
             NI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFI
Sbjct  473   NIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFI  532

Query  552   SLGQVGEGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENVLRYL  611
             SLG++G GKLMV+GN++YNS+L CPNG+SW G V K+G C+L+SD DDM NF  NV+RYL
Sbjct  533   SLGEIGKGKLMVLGNARYNSVLVCPNGFSWGGTV-KNGTCSLSSDRDDMANFFSNVIRYL  591

Query  612   SDDKWKPDAKASMTVGTNLDTVYFKRHGQVTGNSAAFDFHPDFAGISVEHLSSYGDLDPQ  671
             ++      +   + VGTN+  VYFK  GQ  G+ A F++++ F+    ++L+S+ DLD +
Sbjct  592   TGS-----TSNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSK-QTQQLTSFHDLDVN  645

Query  672   EMPLLILNGFEYVTQVGNDPYAIPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMS  731
              +PL+I+N+++Y  +  N PY IPL AD + PKL++ DVTDLI Y+N+GGSVL+ME +++
Sbjct  646   TIPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIIN  705

Query  732   NLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPNRVRQQRATGIWVYERYPAVD  788
                  + S + RLLD+AG++ ++ +SVV ++   + G P+R R QR  GIWV ERY+AV+
Sbjct  706   T----NNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVE  761

Query  789   G------ALPYTIDSKTGEVKWKYQVENKPDDKPKLEVASWLE-DVDGKQETRYAFIDEA  841
             +      +LPY I+S  G + WKY VEN+PDDKPKLEVASW+E + ++K  T+YAFIDE+
Sbjct  762   DESSGQQTLPYVINSD-GSIEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDES  820

Query  842   DH---------------KTE---DSLKAAKEKIFAAF------PGLKECTNPAYHYEVNC  877
             +H               K E    SL  AK+K++ AF       +  EC N+ +HYE+NC
Sbjct  821   QHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINC  880

Query  878   LEYRPGTGVPVTGGMYVPQYTQLSLNADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKG  937
             LEYRPG ++P+TGG+YVP+YT++ L    A+AMV+AA+LGTNI+ LYQHE YFRT+G+ G
Sbjct  881   LEYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSG  940

Query  938   ERLSSVDLERLYQNMSVWLWNDTSYRYEEGKNDELGFKTFTEFLNCYANDAYAGGTKCSA  997
              RL+SVDL+R+YQNMSVWLWND  YRY++ ++DELGFK FT++LNCY+++  +G T C+ 
Sbjct  941   ARLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPE  1000

Query  998   DLKKSLVDNNMIYGDGSSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPG  1056
             +LK  L +  MIY++ S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IKVDV KYPG
Sbjct  1001  ELKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPG  1060

Query  1057  AVSEEGQNVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIKSNANV-PVTVTVALADD  1115
              V+  +     T+ + +N + WFAGN Q+TG WA A++  ++  +++  PVT+T+ALADD
Sbjct  1061  EVTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADD  1120

Query  1116  LTGREKHEVALNRPPRVTKTYSL--DASGTVKFKVPYGGLIYIKGNSSTNESASFTFTGV  1173
             LTGREKHE++L+RPPR++K++ +  D++    F VPYGGLIY +G +S  +   +TF+G 
Sbjct  1121  LTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNS--QQVKLTFSGT  1178

Query  1174  VKAPFYKDGAWKNDLNSPAPLGELESDAFVYTTPKKNLNASNYTGGLEQFANDLDTFASS  1233
             + AP+Y DG W+N L S AP+GE+ SD+F++T+PK NLNA  Y GG+EQFA+DLD F++ 
Sbjct  1179  IDAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSAD  1238

Query  1234  MNDFYGRD--SEDGKHRMFTYKNLPGHKHRFTNDVQISIGDAHSGYPVMnssfspnsttl  1291
             +NDFY+RD  ++++K+R  T K++P ++H+F NDV IS+G AHSGYPVMN SF  +S +L
Sbjct  1239  LNDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSL  1298

Query  1292  pttplnDWLIWHEVGHNAAETPLTVPGATEVANNVLALYMQDRYLGKMNRVADDITVAPE  1351
              T PLN WL+WHEVGHN+AE+P+ V GATEV NN+LALYMQDR  GKM+RV +DI  A +
Sbjct  1299  NTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFD  1358

Query  1352  YLEESNNQAWARGGAGDRLLMYAQLKEWAEKNFDIKKWYPDGTPLPEFYSEREGMKGWNL  1411
             +++  + +AW+ GGAG+RL+M+AQLKEWAE +FDI+ WY D   LP FY E  G+KGWNL
Sbjct  1359  FVNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYND--KLPGFYIEESGIKGWNL  1416

Query  1412  FQLMHRKARGDEVSNDKFGGKNYCAESNGNAADTLMLCASWVAQTDLSEFFKKWNPGANA  1471
             F+LMHR  R ++  + +  G N C  S    +D LMLCAS  AQTDLSEFFK WNPG++A
Sbjct  1417  FKLMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKA  1476

Query  1472  YQLPGASEMSFEGGVSQSAYNTLASLDLPKPEQGPETINQVTEH  1515
             +  P+ ++  +EGG++ S+ + + SL L  P++ P +IN VT+H
Sbjct  1477  FLYPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQH  1520

31) yghJ in NC_007779


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1165 bits (4420),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 721/1484 (49%), Positives = 1051/1484 (71%), Gaps = 85/1484 (5%)

Query  94    LTLGGSQRVTGAT-CNGESSDGFTFKPGEDVTCVAGNTTIATFNTQSEAARSLRAVEKVS  152
             +TL+G+ +  ++  CN++ +  F +   ++V C     +IATF +  +A ++ R  +   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  153   FSLEDAQELAGSDDKKSNAVSLVTSSNSCPANTEQVCLTFSSVIESKRFDSLYKQ-IDLA  211
             +SL  A+E  +S  ++ N   L+ +  +   + +++ L F S +++  F++  ++ +DL+
Sbjct  120   LSLISADEYRDSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDLP  177

Query  212   PEEFKKLVNEEVENNAATDKApsthtspvvpvttpgtkpDLNASFVSANAEQFYQYQPTE  271
              ++F   + E + N+   DK PSTH + + P  TPGT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTD  237

Query  272   IILSEGRLVDSQGYGVAGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTFE  323
             +I S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ ISF+IDTFE
Sbjct  238   VIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFE  297

Query  324   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVINE  383
             LGS R+NK+ + ++ELG +  G N + LIHRY++ ++++  ++PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKL-IIPDKVTQIFSLYPNVINE  356

Query  384   IINLSLSNGAT---LGEGEQVVNLPNEFIEQFNTGQAKEIDTAICA----KTDGCNEARW  436
             +I+LSL+NG     +G+G   + +P EF+ QF++G A  ID +I +    K ++    + 
Sbjct  357   VISLSLPNGDIELDIGDGKTQI-VPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKK-  414

Query  437   FSLTTRNVNDGQIQGVINKLWGVDTNY-----KSVSKFHVFHDSTNFYGSTGNARGQAVV  491
                ++ + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA V
Sbjct  415   --KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAV  472

Query  492   NISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSLVEPENVTRDTATFNLPFI  551
             NI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFI
Sbjct  473   NIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFI  532

Query  552   SLGQVGEGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENVLRYL  611
             SLG++G GKLMV+GN++YNS+L CPNG+SW G V K+G C+L+SD DDM NF  NV+RYL
Sbjct  533   SLGEIGKGKLMVLGNARYNSVLVCPNGFSWGGTV-KNGTCSLSSDRDDMANFFSNVIRYL  591

Query  612   SDDKWKPDAKASMTVGTNLDTVYFKRHGQVTGNSAAFDFHPDFAGISVEHLSSYGDLDPQ  671
             ++      +   + VGTN+  VYFK  GQ  G+ A F++++ F+    ++L+S+ DLD +
Sbjct  592   TGS-----TSNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSK-QTQQLTSFHDLDVN  645

Query  672   EMPLLILNGFEYVTQVGNDPYAIPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMS  731
              +PL+I+N+++Y  +  N PY IPL AD + PKL++ DVTDLI Y+N+GGSVL+ME +++
Sbjct  646   TIPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIIN  705

Query  732   NLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPNRVRQQRATGIWVYERYPAVD  788
                  + S + RLLD+AG++ ++ +SVV ++   + G P+R R QR  GIWV ERY+AV+
Sbjct  706   T----NNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVE  761

Query  789   G------ALPYTIDSKTGEVKWKYQVENKPDDKPKLEVASWLE-DVDGKQETRYAFIDEA  841
             +      +LPY I+S  G + WKY VEN+PDDKPKLEVASW+E + ++K  T+YAFIDE+
Sbjct  762   DESSGQQTLPYVINSD-GSIEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDES  820

Query  842   DH---------------KTE---DSLKAAKEKIFAAF------PGLKECTNPAYHYEVNC  877
             +H               K E    SL  AK+K++ AF       +  EC N+ +HYE+NC
Sbjct  821   QHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINC  880

Query  878   LEYRPGTGVPVTGGMYVPQYTQLSLNADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKG  937
             LEYRPG ++P+TGG+YVP+YT++ L    A+AMV+AA+LGTNI+ LYQHE YFRT+G+ G
Sbjct  881   LEYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSG  940

Query  938   ERLSSVDLERLYQNMSVWLWNDTSYRYEEGKNDELGFKTFTEFLNCYANDAYAGGTKCSA  997
              RL+SVDL+R+YQNMSVWLWND  YRY++ ++DELGFK FT++LNCY+++  +G T C+ 
Sbjct  941   ARLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPE  1000

Query  998   DLKKSLVDNNMIYGDGSSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPG  1056
             +LK  L +  MIY++ S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IKVDV KYPG
Sbjct  1001  ELKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPG  1060

Query  1057  AVSEEGQNVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIKSNANV-PVTVTVALADD  1115
              V+  +     T+ + +N + WFAGN Q+TG WA A++  ++  +++  PVT+T+ALADD
Sbjct  1061  EVTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADD  1120

Query  1116  LTGREKHEVALNRPPRVTKTYSL--DASGTVKFKVPYGGLIYIKGNSSTNESASFTFTGV  1173
             LTGREKHE++L+RPPR++K++ +  D++    F VPYGGLIY +G +S  +   +TF+G 
Sbjct  1121  LTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNS--QQVKLTFSGT  1178

Query  1174  VKAPFYKDGAWKNDLNSPAPLGELESDAFVYTTPKKNLNASNYTGGLEQFANDLDTFASS  1233
             + AP+Y DG W+N L S AP+GE+ SD+F++T+PK NLNA  Y GG+EQFA+DLD F++ 
Sbjct  1179  IDAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSAD  1238

Query  1234  MNDFYGRD--SEDGKHRMFTYKNLPGHKHRFTNDVQISIGDAHSGYPVMnssfspnsttl  1291
             +NDFY+RD  ++++K+R  T K++P ++H+F NDV IS+G AHSGYPVMN SF  +S +L
Sbjct  1239  LNDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSL  1298

Query  1292  pttplnDWLIWHEVGHNAAETPLTVPGATEVANNVLALYMQDRYLGKMNRVADDITVAPE  1351
              T PLN WL+WHEVGHN+AE+P+ V GATEV NN+LALYMQDR  GKM+RV +DI  A +
Sbjct  1299  NTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFD  1358

Query  1352  YLEESNNQAWARGGAGDRLLMYAQLKEWAEKNFDIKKWYPDGTPLPEFYSEREGMKGWNL  1411
             +++  + +AW+ GGAG+RL+M+AQLKEWAE +FDI+ WY D   LP FY E  G+KGWNL
Sbjct  1359  FVNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYND--KLPGFYIEESGIKGWNL  1416

Query  1412  FQLMHRKARGDEVSNDKFGGKNYCAESNGNAADTLMLCASWVAQTDLSEFFKKWNPGANA  1471
             F+LMHR  R ++  + +  G N C  S    +D LMLCAS  AQTDLSEFFK WNPG++A
Sbjct  1417  FKLMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKA  1476

Query  1472  YQLPGASEMSFEGGVSQSAYNTLASLDLPKPEQGPETINQVTEH  1515
             +  P+ ++  +EGG++ S+ + + SL L  P++ P +IN VT+H
Sbjct  1477  FLYPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQH  1520

32) yghJ in NC_017663


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1165 bits (4419),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 721/1484 (49%), Positives = 1051/1484 (71%), Gaps = 85/1484 (5%)

Query  94    LTLGGSQRVTGAT-CNGESSDGFTFKPGEDVTCVAGNTTIATFNTQSEAARSLRAVEKVS  152
             +TL+G+ +  ++  CN++ +  F +   ++V C     +IATF +  +A ++ R  +   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  153   FSLEDAQELAGSDDKKSNAVSLVTSSNSCPANTEQVCLTFSSVIESKRFDSLYKQ-IDLA  211
             +SL  A+E  +S  ++ N   L+ +  +   + +++ L F S +++  F++  ++ +DL+
Sbjct  120   LSLISADEYRDSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDLP  177

Query  212   PEEFKKLVNEEVENNAATDKApsthtspvvpvttpgtkpDLNASFVSANAEQFYQYQPTE  271
              ++F   + E + N+   DK PSTH + + P  TPGT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTD  237

Query  272   IILSEGRLVDSQGYGVAGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTFE  323
             +I S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ ISF+IDTFE
Sbjct  238   VIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFE  297

Query  324   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVINE  383
             LGS R+NK+ + ++ELG +  G N + LIHRY++ ++++  ++PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKL-IIPDKVTQIFSLYPNVINE  356

Query  384   IINLSLSNGAT---LGEGEQIVNLPNEFIEQFNTGQAKEIDTAICA----KTDGCNEARW  436
             +I+LSL+NG     +G+G   + +P EF+ QF++G A  ID +I +    K ++    + 
Sbjct  357   VISLSLPNGDIELDIGDGKTQI-VPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKK-  414

Query  437   FSLTTRNVNDGQIQGVINKLWGVDTNY-----KSVSKFHVFHDSTNFYGSTGNARGQAVV  491
                ++ + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA V
Sbjct  415   --KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAV  472

Query  492   NISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSLVEPENVTRDTATFNLPFI  551
             NI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFI
Sbjct  473   NIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFI  532

Query  552   SLGQVGEGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENVLRYL  611
             SLG++G GKLMV+GN++YNS+L CPNG+SW G V K+G C+L+SD DDM NF  NV+RYL
Sbjct  533   SLGEIGKGKLMVLGNARYNSVLVCPNGFSWGGTV-KNGTCSLSSDRDDMANFFSNVIRYL  591

Query  612   SDDKWKPDAKASMTVGTNLDTVYFKRHGQVTGNSAAFDFHPDFAGISVEHLSSYGDLDPQ  671
             ++      +   + VGTN+  VYFK  GQ  G+ A F++++ F+    ++L+S+ DLD +
Sbjct  592   TGS-----TSNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSK-QTQQLTSFHDLDVN  645

Query  672   EMPLLILNGFEYVTQVGNDPYAIPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMS  731
              +PL+I+N+++Y  +  N PY IPL AD + PKL++ DVTDLI Y+N+GGSVL+ME +++
Sbjct  646   TIPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIIN  705

Query  732   NLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPNRVRQQRATGIWVYERYPAVD  788
                  + S + RLLD+AG++ ++ +SVV ++   + G P+R R QR  GIWV ERY+AV+
Sbjct  706   T----NNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVE  761

Query  789   G------ALPYTIDSKTGEVKWKYQVENKPDDKPKLEVASWLE-DVDGKQETRYAFIDEA  841
             +      +LPY I+S  G + WKY VEN+PDDKPKLEVASW+E + ++K  T+YAFIDE+
Sbjct  762   DESSGQQTLPYVINSD-GSIEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDES  820

Query  842   DH---------------KTE---DSLKAAKEKIFAAF------PGLKECTNPAYHYEVNC  877
             +H               K E    SL  AK+K++ AF       +  EC N+ +HYE+NC
Sbjct  821   QHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINC  880

Query  878   LEYRPGTGVPVTGGMYVPQYTQLSLNADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKG  937
             LEYRPG ++P+TGG+YVP+YT++ L    A+AMV+AA+LGTNI+ LYQHE YFRT+G+ G
Sbjct  881   LEYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSG  940

Query  938   ERLSSVDLERLYQNMSVWLWNDTSYRYEEGKNDELGFKTFTEFLNCYANDAYAGGTKCSA  997
              RL+SVDL+R+YQNMSVWLWND  YRY++ ++DELGFK FT++LNCY+++  +G T C+ 
Sbjct  941   ARLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPE  1000

Query  998   DLKKSLVDNNMIYGDGSSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPG  1056
             +LK  L +  MIY++ S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IKVDV KYPG
Sbjct  1001  ELKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPG  1060

Query  1057  AVSEEGQNVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIKSNANV-PVTVTVALADD  1115
              V+  +     T+ + +N + WFAGN Q+TG WA A++  ++  +++  PVT+T+ALADD
Sbjct  1061  EVTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADD  1120

Query  1116  LTGREKHEVALNRPPRVTKTYSL--DASGTVKFKVPYGGLIYIKGNSSTNESASFTFTGV  1173
             LTGREKHE++L+RPPR++K++ +  D++    F VPYGGLIY +G +S  +   +TF+G 
Sbjct  1121  LTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNS--QQVKLTFSGT  1178

Query  1174  VKAPFYKDGAWKNDLNSPAPLGELESDAFVYTTPKKNLNASNYTGGLEQFANDLDTFASS  1233
             + AP+Y DG W+N L S AP+GE+ SD+F++T+PK NLNA  Y GG+EQFA+DLD F++ 
Sbjct  1179  IDAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSAD  1238

Query  1234  MNDFYGRD--SEDGKHRMFTYKNLPGHKHRFTNDVQISIGDAHSGYPVMnssfspnsttl  1291
             +NDFY+RD  ++++K+R  T K++P ++H+F NDV IS+G AHSGYPVMN SF  +S +L
Sbjct  1239  LNDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSL  1298

Query  1292  pttplnDWLIWHEVGHNAAETPLTVPGATEVANNVLALYMQDRYLGKMNRVADDITVAPE  1351
              T PLN WL+WHEVGHN+AE+P+ V GATEV NN+LALYMQDR  GKM+RV +DI  A +
Sbjct  1299  NTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFD  1358

Query  1352  YLEESNNQAWARGGAGDRLLMYAQLKEWAEKNFDIKKWYPDGTPLPEFYSEREGMKGWNL  1411
             +++  + +AW+ GGAG+RL+M+AQLKEWAE +FDI+ WY D   LP FY E  G+KGWNL
Sbjct  1359  FVNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYND--KLPGFYIEESGIKGWNL  1416

Query  1412  FQLMHRKARGDEVSNDKFGGKNYCAESNGNAADTLMLCASWVAQTDLSEFFKKWNPGANA  1471
             F+LMHR  R ++  + +  G N C  S    +D LMLCAS  AQTDLSEFFK WNPG++A
Sbjct  1417  FKLMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKA  1476

Query  1472  YQLPGASEMSFEGGVSQSAYNTLASLDLPKPEQGPETINQVTEH  1515
             +  P+ ++  +EGG++ S+ + + SL L  P++ P +IN VT+H
Sbjct  1477  FLYPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQH  1520

33) yghJ in NC_011751


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1164 bits (4413),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 716/1482 (49%), Positives = 1053/1482 (72%), Gaps = 81/1482 (5%)

Query  94    LTLGGSQRVTGAT-CNGESSDGFTFTPGEDVTCVAGNTTIATFNTQSEAARSLRAVEKVS  152
             +TL+G+ +  ++  CN++ +  F ++  ++V C     +IATF +  +A ++ R  +   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  153   FSLEDAQELAASDNKKSNAVSLVTSSNSCPADTEQVCLTFSSVIESKRFDSLYKQ-IDLA  211
             +SL  A+E   S  ++ N   L+ +  +  +D  ++ L F S +++  F++  ++ +DL+
Sbjct  120   LSLISADEYRDSPVRQENLQILMKNMATIHGD--KISLVFRSTLDALTFENYLRHNLDLP  177

Query  212   PEEFKKLVNEEVENNAATDKApsthtspvvpvttpgtkpDLNASFVSANAEQFYQYQPTE  271
              ++F   + E + N+   DK PSTH + + P  TPGT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTD  237

Query  272   IILSEGRLVDSQGYGVAGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTFE  323
             +I S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ ISF+IDTFE
Sbjct  238   VIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFE  297

Query  324   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVINE  383
             LGS R+NK+ + ++ELG +  G N + LIHRY++ ++++  ++PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKL-IIPDKVTQIFSLYPNVINE  356

Query  384   IINLSLSNGAT-LDEGEQVVNL-PNEFIEQFKTGQAKEIDTAICA----KTDGCNEARWF  437
             +I+LSL+NG   LD G+   ++ P EF+ QF +G A  ID +I +    K ++    +  
Sbjct  357   VISLSLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKK--  414

Query  438   SLTTRNVNDGQIQGVINKLWGVDTSY-----KSVSKFHVFHDSTNFYGSTGNARGQAVVN  492
               ++ + + +QIQ++INKLWG   +      K V +FH+FHDSTNFYGSTG+AR+QA VN
Sbjct  415   -KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVN  473

Query  493   ISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVRPENVTRETATFNLPFIS  552
             I+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ +T+TFNLPFIS
Sbjct  474   IANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFIS  533

Query  553   LGQVGKGKLMVIGNPHYNSILRCPNGYSWEGGVDKNGQCTRNSDSNDMKHFMQNVLRYLS  612
             LG++GKGKLMV+GN++YNS+L CPNG+SW G V KNG C+ +SD +DM +F  NV+RYL 
Sbjct  534   LGEIGKGKLMVLGNARYNSVLVCPNGFSWGGTV-KNGTCSLSSDRDDMANFFSNVIRYL-  591

Query  613   NDKWTPDAKASMTVGTNLDTVYFKRHGQVTGNSAEFGFHPDFAGISVEHLSSYGDLDPQK  672
                 T  +   + VGTN+  VYFK  GQ  G+ A+F +++ F+    ++L+S+ DLD + 
Sbjct  592   ----TGSTSNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSK-QTQQLTSFHDLDVNT  646

Query  673   MPLLILNGFEYVTQVGGDPYAVPLRADTSKPKLTQQDVTDLIAYMNKGGSVLIMENVMSN  732
             +PL+I+N+++Y  +    PY +PL AD + PKL++ DVTDLI Y+N+GGSVL+ME +++ 
Sbjct  647   IPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIINT  706

Query  733   LKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQRRATGIWVYERYPVVEG  789
                 + S + RLLD+AG++ ++ +SVV ++   + G PDR R +R  GIWV ERY+ VE+
Sbjct  707   ----NNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVED  762

Query  790   E------LPYTIDSKTGKVTWKYQIDNKPDKKPKLEVASW-QEEVDGKQVTQFAFIDEAD  842
             E      LPY I+S  G + WKY ++N+PD KPKLEVASW + E ++K +T++AFIDE++
Sbjct  763   ESSGQQTLPYVINSD-GSIEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDESQ  821

Query  843   H------------------KTTESLDAAKKKILEKFK------GLEECKDSTYHYEINCL  878
             H                      SL  AK+K+L+ FK      +  ECK+S +HYEINCL
Sbjct  822   HWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINCL  881

Query  879   EYRPGTNVPVTGGMYVPRYTQLNLSADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKGE  938
             EYRPG ++P+TGG+YVPRYT+++L+   A+AMV+AA+LGTNI+ LYQHE YFRT+G+ G 
Sbjct  882   EYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSGA  941

Query  939   RLSSVDLERLYQNMSVWLWNEIEYSYDSSKEDELGFKTFTEFLNCYANDAYTGGTQCSDE  998
             RL+SVDL+R+YQNMSVWLWN+++Y YD  + DELGFK FT++LNCY+++   G T C++E
Sbjct  942   RLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPEE  1001

Query  999   LKKSLVDNNMIYGEKSVNKAGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPGA  1058
             LK  L +  MIY+EKS + AG M+PSYPLNYMEKPLTRLMLGRS WDL+IKVDV KYPG 
Sbjct  1002  LKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPGE  1061

Query  1059  VSAEGEKVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIEss-asvpvtvtvaLADDL  1117
             V++ +     T+ + +N + WFAGN Q+TG WA A++  ++  S  + PVT+T+ALADDL
Sbjct  1062  VTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADDL  1121

Query  1118  TGREKHEVALNRPPKVTKTYDLKAND--KVTFKVPYGGLIYIKGNSPKNESAEFTFTGVV  1175
             TGREKHE++L+RPP+++K++ + ++     TF VPYGGLIY +G   +++   +TF+G +
Sbjct  1122  TGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGG--NSQQVKLTFSGTI  1179

Query  1176  KAPFYKDGEWKNALNSPAPLGELESDAFVYTTPKKNLEASNFTGGVAEFAKDLDTFASSM  1235
              AP+Y DG W+N+L S AP+GE+ SD+F++T+PK NL+A  + GG+ +FAKDLD F++ +
Sbjct  1180  DAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADL  1239

Query  1236  NDFYGRND--EDGKHRMFTYKNLTGHKHRFTNDVQISIGDAHSGYPVMNSSFstnsttlp  1293
             NDFY+R++  +++K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +L 
Sbjct  1240  NDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLN  1299

Query  1294  ttplnDWLIWHEVGHNAAETPLTVPGATEVANNVLALYMQDRYLGKMNRVADDITVAPEY  1353
             T PLN WL+WHEVGHN+AE+P+ V GATEV NN+LALYMQDR  GKM+RV +DI  A ++
Sbjct  1300  TMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFDF  1359

Query  1354  LEESNGQAWARGGAGDRLLMYAQLKEWAEKNFDIKTWYPDGNLPAFYSEREGMKGWNLFQ  1413
             ++  +G+AW+ GGAG+RL+M+AQLKEWAE +FDI+ WY D +LP+FY E  G+KGWNLF+
Sbjct  1360  VNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYND-KLPGFYIEESGIKGWNLFK  1418

Query  1414  LMHRKARGDEVGKTKFGERNYCAESNGNAADTLMLCASWVAQTDLSEFFKKWNPGANAYQ  1473
             LMHR  R ++ ++ +    N C  S    +D LMLCAS  AQTDLSEFFK WNPG++A+ 
Sbjct  1419  LMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKAFL  1478

Query  1474  LPGASEMNFEGGVSQSAYETLAALNLPKPQQGPETINQVTEH  1515
              P+ ++  +EGG++ S+ + + +L+L  PQ+ P +IN VT+H
Sbjct  1479  YPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQH  1520

34) EcE24377A_3432 in NC_009801


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1163 bits (4410),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 726/1485 (49%), Positives = 1047/1485 (71%), Gaps = 86/1485 (5%)

Query  79    LTLGGSLRVTGDITCNDESSDGFTFTPGDKVTCVAGNNTTIATFDTQSEAARSLRAVEKV  138
             +TL+G+L+  + + CND+ +  F ++  D+V C   N  +IATF +  +A ++ R  +  
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTI-NGRSIATFTAPFDANKNGRNTDSE  118

Query  139   SFSLEDAQELAGSDNKKSNALSLVTSMNSCPANTEQVCLEFSSVIESKRFDSLYKQ-IDL  197
              +SL  A+E  +S  ++ N   L+ +M +   + +++ L F S +++  F++  ++ +DL
Sbjct  119   VLSLISADEYRDSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDL  176

Query  198   APEEFKKLVNEEVENNAATDKAPSTHTSPVVPATTPGTKPDLNASFVSANAEQFYQYQPT  257
             + ++F   + E + N+   DK PSTH + + P+ TPGT ++LN++FVSANAE+   Y PT
Sbjct  177   PKDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPT  236

Query  258   EIILSEGRLVDSQGDGVVGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTF  309
             ++I S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ ISF+IDTF
Sbjct  237   DVIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTF  296

Query  310   ELGSVRGNKSTIALTELGDEVRGANIDQLIHRYSKAGQNHTRVVPDEVRKVFAEYPNVIN  369
             ELGS R+NK+ + ++ELG +  G N + LIHRY+  +++   ++PD V ++F+ YPNVIN
Sbjct  297   ELGSTRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKL-IIPDKVTQIFSLYPNVIN  355

Query  370   EIINLSLSNGAT---LGEGEQVVNLPNEFIEQFKTGQAKEIDTAICA----KTDGCNEAR  422
             E+I+LSL+NG     +G+G   + +P EF+ QF +G A  ID +I +    K ++    +
Sbjct  356   EVISLSLPNGDIELDIGDGKTQI-VPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKK  414

Query  423   WFSLTTRNVNDGKIQGVINKLWGVDTNY-----KSVSKFHVFHDSTNFYGSTGNARGQAV  477
                 ++ + + ++IQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA 
Sbjct  415   ---KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAA  471

Query  478   VNISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVRPENVTRETATFNLPF  537
             VNI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ +T+TFNLPF
Sbjct  472   VNIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPF  531

Query  538   ISLGQVGDGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENVLRY  597
             ISLG++G GKLMV+GN++YNS+L CPNG+SW G V K+G C+L+SD DDM NF  NV+RY
Sbjct  532   ISLGEIGKGKLMVLGNARYNSVLVCPNGFSWGGTV-KNGTCSLSSDRDDMANFFSNVIRY  590

Query  598   LSDDKWTPDAKASMTVGTNLDTVYFKRHGQVTGNSAAFDFHPDFAGISVEHLSSYGDLDP  657
             L     T  +   + VGTN+  VYFK  GQ  G+ A F++++ F+    ++L+S+ DLD 
Sbjct  591   L-----TGSTSNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSK-QTQQLTSFHDLDV  644

Query  658   QEMPLLILNGFEYVTQVGNDPYAIPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVM  717
             + +PL+I+N+++Y  +  N PY IPL AD + PKL++ DVTDLI Y+N+GGSVL+ME ++
Sbjct  645   NTIPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETII  704

Query  718   SNLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPNRVRQRRSTPIWVYERYPAV  774
             +     + S + RLLD+AG++ ++ +SVV ++   + G P+R R +R   IWV ERY+AV
Sbjct  705   NT----NNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAV  760

Query  775   DGKP------PYTIDDTTKEVIWKYQQENKPDDKPKLEVASW-QEEVEGKQVTQFAFIDE  827
             ++ +      PY I+     + WKY  EN+PDDKPKLEVASW + E  +K +T++AFIDE
Sbjct  761   EDESSGQQTLPYVINSDGS-IEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDE  819

Query  828   ADH--------------KTPE----SLAAAKQRILDAF------PGLEVCKDSDYHYEVN  863
             ++H                PE    SL+ AK+++LDAF       +   CK+S++HYE+N
Sbjct  820   SQHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEIN  879

Query  864   CLEYRPGTDVPVTGGMYVPQYTQLDLSADTAKAMLQAADLGTNIQRLYQHELYFRTNGRQ  923
             CLEYRPG  +P+TGG+YVP+YT++ L+   A+AM++AA+LGTNI+ LYQHE YFRT+G+ 
Sbjct  880   CLEYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKS  939

Query  924   GERLNSVDLERLYQNMSVWLWNETKYRYEEGKEDELGFKTFTEFLNCYTNNAYVG-TQCS  982
             G RLNSVDL+R+YQNMSVWLWN+  YRY++ + DELGFK FT++LNCYT+N   G T C+
Sbjct  940   GARLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCP  999

Query  983   AELKKSLIDNKMIYGEESSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYP  1041
              ELK  L +  MIY+E S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IKVDV KYP
Sbjct  1000  EELKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYP  1059

Query  1042  GVVNTNGETVTQNINLYSAPTKWFAGNMQSTGLWAPAQQEVSIE-SKatvpvtvtvalaD  1100
             G V T +      +++ +  + WFAGN Q+TG WA A+Q  S+  S  T PVT+T+ALAD
Sbjct  1060  GEVTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALAD  1119

Query  1101  DLTGREKHEVSLNRPPRVTKTYDLKAND--KVTFKVPYGGLIYIKGDSKEVQSADFTFTG  1158
             DLTGREKHE++L+RPPR++K++ + ++     TF VPYGGLIY +G++   Q   +TF+G
Sbjct  1120  DLTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNS--QQVKLTFSG  1177

Query  1159  VVKAPFYKDGKWQHDLNSPAPLGELESASFVYTTPKKNLNASNYTGGLEQFANDLDTFAS  1218
              + AP+Y DGKW++ L S AP+GE+ S +F++T+PK NLNA  Y GG+EQFA+DLD F++
Sbjct  1178  TIDAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSA  1237

Query  1219  SMNDFYGRD--SEDGKHRMFTYKNLPGHKHRFANDVQISIGDAHSGYPVMnssfspnstt  1276
              +NDFY+RD  ++++K+R  T K++P ++H+F NDV IS+G AHSGYPVMN SF  +S +
Sbjct  1238  DLNDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRS  1297

Query  1277  lpttplnDWLIWHEVGHNAAETPLTVPGATEVANNVLALYMQDRYLGKMNRVADDITVAP  1336
             L T PLN WL+WHEVGHN+AE+P+ V GATEV NN+LALYMQDR  GKM+RV +DI  A 
Sbjct  1298  LNTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAF  1357

Query  1337  EYLEESNGQAWARGGAGDRLLMYAQLKEWAEKNFDIKKWYPDGTPLPEFYSEREGMKGWN  1396
             ++++  +G+AW+ GGAG+RL+M+AQLKEWAE +FDI+ WY D   LP FY E  G+KGWN
Sbjct  1358  DFVNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYND--KLPGFYIEESGIKGWN  1415

Query  1397  LFQLMHRKARGDEVSNDKFGGKNYCAESNGNAADTLMLCASWVAQTDLSEFFKKWNPGAN  1456
             LF+LMHR  R ++  + +  G N C  S    +D LMLCAS  AQTDLSEFFK WNPG++
Sbjct  1416  LFKLMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSK  1475

Query  1457  AYQLPGASEMSFEGGVSQSAYNTLASLKLPKPEQGPETINKVTEH  1501
             A+  P+ ++  +EGG++ S+ + + SLKL  P++ P +IN VT+H
Sbjct  1476  AFLYPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQH  1520

35) yghJ in NC_008563


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1160 bits (4399),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 717/1482 (49%), Positives = 1052/1482 (71%), Gaps = 81/1482 (5%)

Query  94    LTLGGSQRVTGAT-CNGESSDGFTFTPGNTVSCVVGSTTIATFNTQSEAARSLRAVDKVS  152
             +TL+G+ +  ++  CN++ +  F ++  + V C + + +IATF +  +A ++ R  D   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  153   FSLEDAQELANSENKKTNAISLVTSSDSCPADAEQLCLTFSSVVDRARFEKLYKQ-IDLA  211
             +SL  A+E  +S  ++ N   L+ +  +   +++++ L F S +D   FE+  ++ +DL+
Sbjct  120   LSLISADEYRDSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDLP  177

Query  212   TDNFSKLVNEEVENNAATDKApsthtstvvpvttEGTKPDLNASFVSANAEQFYQYQPTE  271
              D+F   + E + N+   DK PSTH + + P  T GT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTD  237

Query  272   IILSEGQLVDSLGNGVAGVDYYTNSGRGVTD--------ENGKFSFSWGETISFGIDTFE  323
             +I S G+L+DS G  + GV Y++N+ RG+T+        ++G F FSWG+ ISF+IDTFE
Sbjct  238   VIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFE  297

Query  324   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVINE  383
             LGS R+NK+ + ++ELG +  G N + LIHRY++ ++++  ++PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKL-IIPDKVTQIFSLYPNVINE  356

Query  384   IINLSLSNGAT-LDEGDQNV-VLPNEFIEQFKTGQAKEIDTAICA----KTDGCNEARWF  437
             +I+LSL+NG   LD GD +  ++P EF+ QF +G A  ID +I +    K ++    +  
Sbjct  357   VISLSLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKK--  414

Query  438   SLTTRNVNDGQIQGVINKLWGVDTNYQS-----VSKFHVFHDSTNFYGSTGNARGQAVVN  492
               ++ + + +QIQ++INKLWG     Q+     V +FH+FHDSTNFYGSTG+AR+QA VN
Sbjct  415   -KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVN  473

Query  493   ISNSAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVQPENVTRDTATFNLPFIS  552
             I+NSAFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFIS
Sbjct  474   IANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFIS  533

Query  553   LGQVGEGKLMVIGNPHYNSILRCPNGYSWGGGVNSKGECTLSGDSDDMKHFMQNVLRYLS  612
             LG++G GKLMV+GN++YNS+L CPNG+SWGG V+ +G C+LS+D DDM +F  NV+RYL+
Sbjct  534   LGEIGKGKLMVLGNARYNSVLVCPNGFSWGGTVK-NGTCSLSSDRDDMANFFSNVIRYLT  592

Query  613   NDIWQPNTKSIMTVGTNLENVYFKKAGQVLGNSAPFAFHEDFTGITVKQLTSYGDLNPEE  672
                   +T + + VGTN+ +VYFK +GQ +G+ A F ++  F+  T +QLTS+ DL+ + 
Sbjct  593   G-----STSNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSKQT-QQLTSFHDLDVNT  646

Query  673   IPLLILNGFEYVTQWSGDPYAVPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMSN  732
             IPL+I+N+++Y  +    PY +PL AD + PKL++ DVTDLI Y+N+GGSVL+ME +++ 
Sbjct  647   IPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIINT  706

Query  733   LKEESASSFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQRRATGIWVYERYPAADG  789
                 + S + RLLD+AG++ ++ +SVV ++   + G PDR R +R  GIWV ERY+A ++
Sbjct  707   ----NNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVED  762

Query  790   AQP-----PYTIDPNTGEVTWKYQQDNKPDDKPKLEVASW-QEEVEGKQVTRYAFIDEAE  843
               +     PY I+++ G + WKY  +N+PDDKPKLEVASW + E  +K +T+YAFIDE++
Sbjct  763   ESSGQQTLPYVINSD-GSIEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDESQ  821

Query  844   Y------------------TTEESLEAAKAKIFEKF------PGLQECKDSTYHYEINCL  879
                                  + SL  AK K+++ F       +  ECK+S +HYEINCL
Sbjct  822   HWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINCL  881

Query  880   ERRPGTDVPVTGGMYVPRYTQLNLDADTAKAMVQAADLGTNIQRLYQHELYFRTKGSKGE  939
             E RPG  +P+TGG+YVPRYT+++L+   A+AMV+AA+LGTNI+ LYQHE YFRTKG  G 
Sbjct  882   EYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSGA  941

Query  940   RLNSVDLERLYQNMSVWLWNDTKYRYEEGKEDELGFKTFTEFLNCYANDAYAGGTKCSAD  999
             RLNSVDL+R+YQNMSVWLWND  YRY++ + DELGFK FT++LNCY+++  +G T C+ +
Sbjct  942   RLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPEE  1001

Query  1000  LKKSLVDNNMIYGDGSSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPGS  1058
             LK  L +  MIY++ S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IKVDV KYPG 
Sbjct  1002  LKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPGE  1061

Query  1059  VSAKGESVTENISLYSNPTKWFAGNMQSTGLWAPAQQDVTIKss-asvpvtvtvaLADDL  1117
             V++++ +    + + +N + WFAGN Q+TG WA A+Q  ++  S  + PVT+T+ALADDL
Sbjct  1062  VTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADDL  1121

Query  1118  TGREKHEVALNRPPRVTKTYTLEANGE--VTFKVPYGGLIYIKGDSKDDVSANFTFTGVV  1175
             TGREKHE++L+RPPR++K++ + +++    TF VPYGGLIY +G++ ++V  ++TF+G +
Sbjct  1122  TGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNSQQV--KLTFSGTI  1179

Query  1176  KAPFYKDGEWKNDLDSPAPLGELESASFVYTTPKKNLEASNFTGGVAEFAKDLDTFASSM  1235
              AP+Y DG W+N L S AP+GE+ S +F++T+PK NL+A  + GG+ +FAKDLD F++ +
Sbjct  1180  DAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADL  1239

Query  1236  NDFYGRND--EDGKHRMFTYKNLTGHKHRFTNDVQISIGDAHSGYPVMNSSFstnsttlp  1293
             NDFY+R++  +++K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +L 
Sbjct  1240  NDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLN  1299

Query  1294  ttplnDWLIWHEVGHNAAETPLNVPGATEVANNVLALYMQDRYLGKMNRVADDITVAPEY  1353
             T PLN WL+WHEVGHN+AE+P+NV GATEV NN+LALYMQDR  GKM+RV +DI  A ++
Sbjct  1300  TMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFDF  1359

Query  1354  LDESNGQAWARGGAGDRLLMYAQLKEWAEENFDIKQWYPDGELPKFYSDRKGMKGWNLFQ  1413
             ++  +G+AW+ GGAG+RL+M+AQLKEWAE +FDI++WY D  LP FY +  G+KGWNLF+
Sbjct  1360  VNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYND-KLPGFYIEESGIKGWNLFK  1418

Query  1414  LMHRKARGDDVGNSTFGGKNYCAESNGNAADTLMLCASWVAQADLSEFFKKWNPGASAYQ  1473
             LMHR  R ++ ++    G N C  S    +D LMLCAS  AQ+DLSEFFK WNPG+ A+ 
Sbjct  1419  LMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKAFL  1478

Query  1474  LPGATEMSFQGGVSSSAYSTLASLKLPKPEKGPETINKVTEH  1515
              P+  +  ++GG+++S+   + SLKL  P+K P +IN VT+H
Sbjct  1479  YPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQH  1520

36) ECOK1_3385 in NC_017628


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1160 bits (4399),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 717/1482 (49%), Positives = 1052/1482 (71%), Gaps = 81/1482 (5%)

Query  94    LTLGGSQRVTGAT-CNGESSDGFTFTPGNTVSCVVGSTTIATFNTQSEAARSLRAVDKVS  152
             +TL+G+ +  ++  CN++ +  F ++  + V C + + +IATF +  +A ++ R  D   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  153   FSLEDAQELANSENKKTNAISLVTSSDSCPADAEQLCLTFSSVVDRARFEKLYKQ-IDLA  211
             +SL  A+E  +S  ++ N   L+ +  +   +++++ L F S +D   FE+  ++ +DL+
Sbjct  120   LSLISADEYRDSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDLP  177

Query  212   TDNFSKLVNEEVENNAATDKApsthtstvvpvttEGTKPDLNASFVSANAEQFYQYQPTE  271
              D+F   + E + N+   DK PSTH + + P  T GT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTD  237

Query  272   IILSEGQLVDSLGNGVAGVDYYTNSGRGVTD--------ENGKFSFSWGETISFGIDTFE  323
             +I S G+L+DS G  + GV Y++N+ RG+T+        ++G F FSWG+ ISF+IDTFE
Sbjct  238   VIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFE  297

Query  324   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVINE  383
             LGS R+NK+ + ++ELG +  G N + LIHRY++ ++++  ++PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKL-IIPDKVTQIFSLYPNVINE  356

Query  384   IINLSLSNGAT-LDEGDQNV-VLPNEFIEQFKTGQAKEIDTAICA----KTDGCNEARWF  437
             +I+LSL+NG   LD GD +  ++P EF+ QF +G A  ID +I +    K ++    +  
Sbjct  357   VISLSLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKK--  414

Query  438   SLTTRNVNDGQIQGVINKLWGVDTNYQS-----VSKFHVFHDSTNFYGSTGNARGQAVVN  492
               ++ + + +QIQ++INKLWG     Q+     V +FH+FHDSTNFYGSTG+AR+QA VN
Sbjct  415   -KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVN  473

Query  493   ISNSAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVQPENVTRDTATFNLPFIS  552
             I+NSAFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFIS
Sbjct  474   IANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFIS  533

Query  553   LGQVGEGKLMVIGNPHYNSILRCPNGYSWGGGVNSKGECTLSGDSDDMKHFMQNVLRYLS  612
             LG++G GKLMV+GN++YNS+L CPNG+SWGG V+ +G C+LS+D DDM +F  NV+RYL+
Sbjct  534   LGEIGKGKLMVLGNARYNSVLVCPNGFSWGGTVK-NGTCSLSSDRDDMANFFSNVIRYLT  592

Query  613   NDIWQPNTKSIMTVGTNLENVYFKKAGQVLGNSAPFAFHEDFTGITVKQLTSYGDLNPEE  672
                   +T + + VGTN+ +VYFK +GQ +G+ A F ++  F+  T +QLTS+ DL+ + 
Sbjct  593   G-----STSNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSKQT-QQLTSFHDLDVNT  646

Query  673   IPLLILNGFEYVTQWSGDPYAVPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMSN  732
             IPL+I+N+++Y  +    PY +PL AD + PKL++ DVTDLI Y+N+GGSVL+ME +++ 
Sbjct  647   IPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIINT  706

Query  733   LKEESASSFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQRRATGIWVYERYPAADG  789
                 + S + RLLD+AG++ ++ +SVV ++   + G PDR R +R  GIWV ERY+A ++
Sbjct  707   ----NNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVED  762

Query  790   AQP-----PYTIDPNTGEVTWKYQQDNKPDDKPKLEVASW-QEEVEGKQVTRYAFIDEAE  843
               +     PY I+++ G + WKY  +N+PDDKPKLEVASW + E  +K +T+YAFIDE++
Sbjct  763   ESSGQQTLPYVINSD-GSIEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDESQ  821

Query  844   Y------------------TTEESLEAAKAKIFEKF------PGLQECKDSTYHYEINCL  879
                                  + SL  AK K+++ F       +  ECK+S +HYEINCL
Sbjct  822   HWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINCL  881

Query  880   ERRPGTDVPVTGGMYVPRYTQLNLDADTAKAMVQAADLGTNIQRLYQHELYFRTKGSKGE  939
             E RPG  +P+TGG+YVPRYT+++L+   A+AMV+AA+LGTNI+ LYQHE YFRTKG  G 
Sbjct  882   EYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSGA  941

Query  940   RLNSVDLERLYQNMSVWLWNDTKYRYEEGKEDELGFKTFTEFLNCYANDAYAGGTKCSAD  999
             RLNSVDL+R+YQNMSVWLWND  YRY++ + DELGFK FT++LNCY+++  +G T C+ +
Sbjct  942   RLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPEE  1001

Query  1000  LKKSLVDNNMIYGDGSSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPGS  1058
             LK  L +  MIY++ S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IKVDV KYPG 
Sbjct  1002  LKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPGE  1061

Query  1059  VSAKGESVTENISLYSNPTKWFAGNMQSTGLWAPAQQDVTIKss-asvpvtvtvaLADDL  1117
             V++++ +    + + +N + WFAGN Q+TG WA A+Q  ++  S  + PVT+T+ALADDL
Sbjct  1062  VTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADDL  1121

Query  1118  TGREKHEVALNRPPRVTKTYTLEANGE--VTFKVPYGGLIYIKGDSKDDVSANFTFTGVV  1175
             TGREKHE++L+RPPR++K++ + +++    TF VPYGGLIY +G++ ++V  ++TF+G +
Sbjct  1122  TGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNSQQV--KLTFSGTI  1179

Query  1176  KAPFYKDGEWKNDLDSPAPLGELESASFVYTTPKKNLEASNFTGGVAEFAKDLDTFASSM  1235
              AP+Y DG W+N L S AP+GE+ S +F++T+PK NL+A  + GG+ +FAKDLD F++ +
Sbjct  1180  DAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADL  1239

Query  1236  NDFYGRND--EDGKHRMFTYKNLTGHKHRFTNDVQISIGDAHSGYPVMNSSFstnsttlp  1293
             NDFY+R++  +++K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +L 
Sbjct  1240  NDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLN  1299

Query  1294  ttplnDWLIWHEVGHNAAETPLNVPGATEVANNVLALYMQDRYLGKMNRVADDITVAPEY  1353
             T PLN WL+WHEVGHN+AE+P+NV GATEV NN+LALYMQDR  GKM+RV +DI  A ++
Sbjct  1300  TMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFDF  1359

Query  1354  LDESNGQAWARGGAGDRLLMYAQLKEWAEENFDIKQWYPDGELPKFYSDRKGMKGWNLFQ  1413
             ++  +G+AW+ GGAG+RL+M+AQLKEWAE +FDI++WY D  LP FY +  G+KGWNLF+
Sbjct  1360  VNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYND-KLPGFYIEESGIKGWNLFK  1418

Query  1414  LMHRKARGDDVGNSTFGGKNYCAESNGNAADTLMLCASWVAQADLSEFFKKWNPGASAYQ  1473
             LMHR  R ++ ++    G N C  S    +D LMLCAS  AQ+DLSEFFK WNPG+ A+ 
Sbjct  1419  LMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKAFL  1478

Query  1474  LPGATEMSFQGGVSSSAYSTLASLKLPKPEKGPETINKVTEH  1515
              P+  +  ++GG+++S+   + SLKL  P+K P +IN VT+H
Sbjct  1479  YPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQH  1520

37) ECOPMV1_03270 in NC_022370


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1160 bits (4399),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 717/1482 (49%), Positives = 1052/1482 (71%), Gaps = 81/1482 (5%)

Query  94    LTLGGSQRVTGAT-CNGESSDGFTFTPGNTVSCVVGSTTIATFNTQSEAARSLRAVDKVS  152
             +TL+G+ +  ++  CN++ +  F ++  + V C + + +IATF +  +A ++ R  D   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  153   FSLEDAQELANSENKKTNAISLVTSSDSCPADAEQLCLTFSSVVDRARFEKLYKQ-IDLA  211
             +SL  A+E  +S  ++ N   L+ +  +   +++++ L F S +D   FE+  ++ +DL+
Sbjct  120   LSLISADEYRDSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDLP  177

Query  212   TDNFSKLVNEEVENNAATDKApsthtstvvpvttEGTKPDLNASFVSANAEQFYQYQPTE  271
              D+F   + E + N+   DK PSTH + + P  T GT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTD  237

Query  272   IILSEGQLVDSLGNGVAGVDYYTNSGRGVTD--------ENGKFSFSWGETISFGIDTFE  323
             +I S G+L+DS G  + GV Y++N+ RG+T+        ++G F FSWG+ ISF+IDTFE
Sbjct  238   VIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFE  297

Query  324   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVINE  383
             LGS R+NK+ + ++ELG +  G N + LIHRY++ ++++  ++PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKL-IIPDKVTQIFSLYPNVINE  356

Query  384   IINLSLSNGAT-LDEGDQNV-VLPNEFIEQFKTGQAKEIDTAICA----KTDGCNEARWF  437
             +I+LSL+NG   LD GD +  ++P EF+ QF +G A  ID +I +    K ++    +  
Sbjct  357   VISLSLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKK--  414

Query  438   SLTTRNVNDGQIQGVINKLWGVDTNYQS-----VSKFHVFHDSTNFYGSTGNARGQAVVN  492
               ++ + + +QIQ++INKLWG     Q+     V +FH+FHDSTNFYGSTG+AR+QA VN
Sbjct  415   -KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVN  473

Query  493   ISNSAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVQPENVTRDTATFNLPFIS  552
             I+NSAFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFIS
Sbjct  474   IANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFIS  533

Query  553   LGQVGEGKLMVIGNPHYNSILRCPNGYSWGGGVNSKGECTLSGDSDDMKHFMQNVLRYLS  612
             LG++G GKLMV+GN++YNS+L CPNG+SWGG V+ +G C+LS+D DDM +F  NV+RYL+
Sbjct  534   LGEIGKGKLMVLGNARYNSVLVCPNGFSWGGTVK-NGTCSLSSDRDDMANFFSNVIRYLT  592

Query  613   NDIWQPNTKSIMTVGTNLENVYFKKAGQVLGNSAPFAFHEDFTGITVKQLTSYGDLNPEE  672
                   +T + + VGTN+ +VYFK +GQ +G+ A F ++  F+  T +QLTS+ DL+ + 
Sbjct  593   G-----STSNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSKQT-QQLTSFHDLDVNT  646

Query  673   IPLLILNGFEYVTQWSGDPYAVPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMSN  732
             IPL+I+N+++Y  +    PY +PL AD + PKL++ DVTDLI Y+N+GGSVL+ME +++ 
Sbjct  647   IPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIINT  706

Query  733   LKEESASSFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQRRATGIWVYERYPAADG  789
                 + S + RLLD+AG++ ++ +SVV ++   + G PDR R +R  GIWV ERY+A ++
Sbjct  707   ----NNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVED  762

Query  790   AQP-----PYTIDPNTGEVTWKYQQDNKPDDKPKLEVASW-QEEVEGKQVTRYAFIDEAE  843
               +     PY I+++ G + WKY  +N+PDDKPKLEVASW + E  +K +T+YAFIDE++
Sbjct  763   ESSGQQTLPYVINSD-GSIEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDESQ  821

Query  844   Y------------------TTEESLEAAKAKIFEKF------PGLQECKDSTYHYEINCL  879
                                  + SL  AK K+++ F       +  ECK+S +HYEINCL
Sbjct  822   HWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINCL  881

Query  880   ERRPGTDVPVTGGMYVPRYTQLNLDADTAKAMVQAADLGTNIQRLYQHELYFRTKGSKGE  939
             E RPG  +P+TGG+YVPRYT+++L+   A+AMV+AA+LGTNI+ LYQHE YFRTKG  G 
Sbjct  882   EYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSGA  941

Query  940   RLNSVDLERLYQNMSVWLWNDTKYRYEEGKEDELGFKTFTEFLNCYANDAYAGGTKCSAD  999
             RLNSVDL+R+YQNMSVWLWND  YRY++ + DELGFK FT++LNCY+++  +G T C+ +
Sbjct  942   RLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPEE  1001

Query  1000  LKKSLVDNNMIYGDGSSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPGS  1058
             LK  L +  MIY++ S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IKVDV KYPG 
Sbjct  1002  LKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPGE  1061

Query  1059  VSAKGESVTENISLYSNPTKWFAGNMQSTGLWAPAQQDVTIKss-asvpvtvtvaLADDL  1117
             V++++ +    + + +N + WFAGN Q+TG WA A+Q  ++  S  + PVT+T+ALADDL
Sbjct  1062  VTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADDL  1121

Query  1118  TGREKHEVALNRPPRVTKTYTLEANGE--VTFKVPYGGLIYIKGDSKDDVSANFTFTGVV  1175
             TGREKHE++L+RPPR++K++ + +++    TF VPYGGLIY +G++ ++V  ++TF+G +
Sbjct  1122  TGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNSQQV--KLTFSGTI  1179

Query  1176  KAPFYKDGEWKNDLDSPAPLGELESASFVYTTPKKNLEASNFTGGVAEFAKDLDTFASSM  1235
              AP+Y DG W+N L S AP+GE+ S +F++T+PK NL+A  + GG+ +FAKDLD F++ +
Sbjct  1180  DAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADL  1239

Query  1236  NDFYGRND--EDGKHRMFTYKNLTGHKHRFTNDVQISIGDAHSGYPVMNSSFstnsttlp  1293
             NDFY+R++  +++K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +L 
Sbjct  1240  NDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLN  1299

Query  1294  ttplnDWLIWHEVGHNAAETPLNVPGATEVANNVLALYMQDRYLGKMNRVADDITVAPEY  1353
             T PLN WL+WHEVGHN+AE+P+NV GATEV NN+LALYMQDR  GKM+RV +DI  A ++
Sbjct  1300  TMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFDF  1359

Query  1354  LDESNGQAWARGGAGDRLLMYAQLKEWAEENFDIKQWYPDGELPKFYSDRKGMKGWNLFQ  1413
             ++  +G+AW+ GGAG+RL+M+AQLKEWAE +FDI++WY D  LP FY +  G+KGWNLF+
Sbjct  1360  VNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYND-KLPGFYIEESGIKGWNLFK  1418

Query  1414  LMHRKARGDDVGNSTFGGKNYCAESNGNAADTLMLCASWVAQADLSEFFKKWNPGASAYQ  1473
             LMHR  R ++ ++    G N C  S    +D LMLCAS  AQ+DLSEFFK WNPG+ A+ 
Sbjct  1419  LMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKAFL  1478

Query  1474  LPGATEMSFQGGVSSSAYSTLASLKLPKPEKGPETINKVTEH  1515
              P+  +  ++GG+++S+   + SLKL  P+K P +IN VT+H
Sbjct  1479  YPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQH  1520

38) yghJ in NC_011742


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1160 bits (4400),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 717/1482 (49%), Positives = 1052/1482 (71%), Gaps = 81/1482 (5%)

Query  100   LTLGGSQRVTGAT-CNGESSDGFTFTPGNTVSCVVGSTTIATFNTQSEAARSLRAVDKVS  158
             +TL+G+ +  ++  CN++ +  F ++  + V C + + +IATF +  +A ++ R  D   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  159   FSLEDAQELANSENKKTNAISLVTSSDSCPADAEQLCLTFSSVVDRARFEKLYKQ-IDLA  217
             +SL  A+E  +S  ++ N   L+ +  +   +++++ L F S +D   FE+  ++ +DL+
Sbjct  120   LSLISADEYRDSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDLP  177

Query  218   TDNFSKLVNEEVENNAATDKApsthtstvvpvttEGTKPDLNASFVSANAEQFYQYQPTE  277
              D+F   + E + N+   DK PSTH + + P  T GT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTD  237

Query  278   IILSEGQLVDSLGNGVAGVDYYTNSGRGVTD--------ENGKFSFSWGETISFGIDTFE  329
             +I S G+L+DS G  + GV Y++N+ RG+T+        ++G F FSWG+ ISF+IDTFE
Sbjct  238   VIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFE  297

Query  330   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVINE  389
             LGS R+NK+ + ++ELG +  G N + LIHRY++ ++++  ++PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKL-IIPDKVTQIFSLYPNVINE  356

Query  390   IINLSLSNGAT-LDEGDQNV-VLPNEFIEQFKTGQAKEIDTAICA----KTDGCNEARWF  443
             +I+LSL+NG   LD GD +  ++P EF+ QF +G A  ID +I +    K ++    +  
Sbjct  357   VISLSLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKK--  414

Query  444   SLTTRNVNDGQIQGVINKLWGVDTNYQS-----VSKFHVFHDSTNFYGSTGNARGQAVVN  498
               ++ + + +QIQ++INKLWG     Q+     V +FH+FHDSTNFYGSTG+AR+QA VN
Sbjct  415   -KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVN  473

Query  499   ISNSAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVQPENVTRDTATFNLPFIS  558
             I+NSAFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFIS
Sbjct  474   IANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFIS  533

Query  559   LGQVGEGKLMVIGNPHYNSILRCPNGYSWGGGVNSKGECTLSGDSDDMKHFMQNVLRYLS  618
             LG++G GKLMV+GN++YNS+L CPNG+SWGG V+ +G C+LS+D DDM +F  NV+RYL+
Sbjct  534   LGEIGKGKLMVLGNARYNSVLVCPNGFSWGGTVK-NGTCSLSSDRDDMANFFSNVIRYLT  592

Query  619   NDIWQPNTKSIMTVGTNLENVYFKKAGQVLGNSAPFAFHEDFTGITVKQLTSYGDLNPEE  678
                   +T + + VGTN+ +VYFK +GQ +G+ A F ++  F+  T +QLTS+ DL+ + 
Sbjct  593   G-----STSNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSKQT-QQLTSFHDLDVNT  646

Query  679   IPLLILNGFEYVTQWSGDPYAVPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMSN  738
             IPL+I+N+++Y  +    PY +PL AD + PKL++ DVTDLI Y+N+GGSVL+ME +++ 
Sbjct  647   IPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIINT  706

Query  739   LKEESASSFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQRRATGIWVYERYPAADG  795
                 + S + RLLD+AG++ ++ +SVV ++   + G PDR R +R  GIWV ERY+A ++
Sbjct  707   ----NNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVED  762

Query  796   AQP-----PYTIDPNTGEVTWKYQQDNKPDDKPKLEVASW-QEEVEGKQVTRYAFIDEAE  849
               +     PY I+++ G + WKY  +N+PDDKPKLEVASW + E  +K +T+YAFIDE++
Sbjct  763   ESSGQQTLPYVINSD-GSIEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDESQ  821

Query  850   Y------------------TTEESLEAAKAKIFEKF------PGLQECKDSTYHYEINCL  885
                                  + SL  AK K+++ F       +  ECK+S +HYEINCL
Sbjct  822   HWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINCL  881

Query  886   ERRPGTDVPVTGGMYVPRYTQLNLDADTAKAMVQAADLGTNIQRLYQHELYFRTKGSKGE  945
             E RPG  +P+TGG+YVPRYT+++L+   A+AMV+AA+LGTNI+ LYQHE YFRTKG  G 
Sbjct  882   EYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSGA  941

Query  946   RLNSVDLERLYQNMSVWLWNDTKYRYEEGKEDELGFKTFTEFLNCYANDAYAGGTKCSAD  1005
             RLNSVDL+R+YQNMSVWLWND  YRY++ + DELGFK FT++LNCY+++  +G T C+ +
Sbjct  942   RLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPEE  1001

Query  1006  LKKSLVDNNMIYGDGSSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPGS  1064
             LK  L +  MIY++ S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IKVDV KYPG 
Sbjct  1002  LKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPGE  1061

Query  1065  VSAKGESVTENISLYSNPTKWFAGNMQSTGLWAPAQQDVTIKss-asvpvtvtvaLADDL  1123
             V++++ +    + + +N + WFAGN Q+TG WA A+Q  ++  S  + PVT+T+ALADDL
Sbjct  1062  VTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADDL  1121

Query  1124  TGREKHEVALNRPPRVTKTYTLEANGE--VTFKVPYGGLIYIKGDSKDDVSANFTFTGVV  1181
             TGREKHE++L+RPPR++K++ + +++    TF VPYGGLIY +G++ ++V  ++TF+G +
Sbjct  1122  TGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNSQQV--KLTFSGTI  1179

Query  1182  KAPFYKDGEWKNDLDSPAPLGELESASFVYTTPKKNLEASNFTGGVAEFAKDLDTFASSM  1241
              AP+Y DG W+N L S AP+GE+ S +F++T+PK NL+A  + GG+ +FAKDLD F++ +
Sbjct  1180  DAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADL  1239

Query  1242  NDFYGRND--EDGKHRMFTYKNLTGHKHRFTNDVQISIGDAHSGYPVMNSSFstnsttlp  1299
             NDFY+R++  +++K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +L 
Sbjct  1240  NDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLN  1299

Query  1300  ttplnDWLIWHEVGHNAAETPLNVPGATEVANNVLALYMQDRYLGKMNRVADDITVAPEY  1359
             T PLN WL+WHEVGHN+AE+P+NV GATEV NN+LALYMQDR  GKM+RV +DI  A ++
Sbjct  1300  TMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFDF  1359

Query  1360  LDESNGQAWARGGAGDRLLMYAQLKEWAEENFDIKQWYPDGELPKFYSDRKGMKGWNLFQ  1419
             ++  +G+AW+ GGAG+RL+M+AQLKEWAE +FDI++WY D  LP FY +  G+KGWNLF+
Sbjct  1360  VNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYND-KLPGFYIEESGIKGWNLFK  1418

Query  1420  LMHRKARGDDVGNSTFGGKNYCAESNGNAADTLMLCASWVAQADLSEFFKKWNPGASAYQ  1479
             LMHR  R ++ ++    G N C  S    +D LMLCAS  AQ+DLSEFFK WNPG+ A+ 
Sbjct  1419  LMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKAFL  1478

Query  1480  LPGATEMSFQGGVSSSAYSTLASLKLPKPEKGPETINKVTEH  1521
              P+  +  ++GG+++S+   + SLKL  P+K P +IN VT+H
Sbjct  1479  YPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQH  1520

39) UM146_01530 in NC_017632


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1160 bits (4399),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 717/1482 (49%), Positives = 1052/1482 (71%), Gaps = 81/1482 (5%)

Query  50    LTLGGSQRVTGAT-CNGESSDGFTFTPGNTVSCVVGSTTIATFNTQSEAARSLRAVDKVS  108
             +TL+G+ +  ++  CN++ +  F ++  + V C + + +IATF +  +A ++ R  D   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  109   FSLEDAQELANSENKKTNAISLVTSSDSCPADAEQLCLTFSSVVDRARFEKLYKQ-IDLA  167
             +SL  A+E  +S  ++ N   L+ +  +   +++++ L F S +D   FE+  ++ +DL+
Sbjct  120   LSLISADEYRDSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDLP  177

Query  168   TDNFSKLVNEEVENNAATDKApsthtstvvpvttEGTKPDLNASFVSANAEQFYQYQPTE  227
              D+F   + E + N+   DK PSTH + + P  T GT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTD  237

Query  228   IILSEGQLVDSLGNGVAGVDYYTNSGRGVTD--------ENGKFSFSWGETISFGIDTFE  279
             +I S G+L+DS G  + GV Y++N+ RG+T+        ++G F FSWG+ ISF+IDTFE
Sbjct  238   VIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFE  297

Query  280   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVINE  339
             LGS R+NK+ + ++ELG +  G N + LIHRY++ ++++  ++PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKL-IIPDKVTQIFSLYPNVINE  356

Query  340   IINLSLSNGAT-LDEGDQNV-VLPNEFIEQFKTGQAKEIDTAICA----KTDGCNEARWF  393
             +I+LSL+NG   LD GD +  ++P EF+ QF +G A  ID +I +    K ++    +  
Sbjct  357   VISLSLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKK--  414

Query  394   SLTTRNVNDGQIQGVINKLWGVDTNYQS-----VSKFHVFHDSTNFYGSTGNARGQAVVN  448
               ++ + + +QIQ++INKLWG     Q+     V +FH+FHDSTNFYGSTG+AR+QA VN
Sbjct  415   -KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVN  473

Query  449   ISNSAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVQPENVTRDTATFNLPFIS  508
             I+NSAFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFIS
Sbjct  474   IANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFIS  533

Query  509   LGQVGEGKLMVIGNPHYNSILRCPNGYSWGGGVNSKGECTLSGDSDDMKHFMQNVLRYLS  568
             LG++G GKLMV+GN++YNS+L CPNG+SWGG V+ +G C+LS+D DDM +F  NV+RYL+
Sbjct  534   LGEIGKGKLMVLGNARYNSVLVCPNGFSWGGTVK-NGTCSLSSDRDDMANFFSNVIRYLT  592

Query  569   NDIWQPNTKSIMTVGTNLENVYFKKAGQVLGNSAPFAFHEDFTGITVKQLTSYGDLNPEE  628
                   +T + + VGTN+ +VYFK +GQ +G+ A F ++  F+  T +QLTS+ DL+ + 
Sbjct  593   G-----STSNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSKQT-QQLTSFHDLDVNT  646

Query  629   IPLLILNGFEYVTQWSGDPYAVPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMSN  688
             IPL+I+N+++Y  +    PY +PL AD + PKL++ DVTDLI Y+N+GGSVL+ME +++ 
Sbjct  647   IPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIINT  706

Query  689   LKEESASSFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQRRATGIWVYERYPAADG  745
                 + S + RLLD+AG++ ++ +SVV ++   + G PDR R +R  GIWV ERY+A ++
Sbjct  707   ----NNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVED  762

Query  746   AQP-----PYTIDPNTGEVTWKYQQDNKPDDKPKLEVASW-QEEVEGKQVTRYAFIDEAE  799
               +     PY I+++ G + WKY  +N+PDDKPKLEVASW + E  +K +T+YAFIDE++
Sbjct  763   ESSGQQTLPYVINSD-GSIEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDESQ  821

Query  800   Y------------------TTEESLEAAKAKIFEKF------PGLQECKDSTYHYEINCL  835
                                  + SL  AK K+++ F       +  ECK+S +HYEINCL
Sbjct  822   HWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINCL  881

Query  836   ERRPGTDVPVTGGMYVPRYTQLNLDADTAKAMVQAADLGTNIQRLYQHELYFRTKGSKGE  895
             E RPG  +P+TGG+YVPRYT+++L+   A+AMV+AA+LGTNI+ LYQHE YFRTKG  G 
Sbjct  882   EYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSGA  941

Query  896   RLNSVDLERLYQNMSVWLWNDTKYRYEEGKEDELGFKTFTEFLNCYANDAYAGGTKCSAD  955
             RLNSVDL+R+YQNMSVWLWND  YRY++ + DELGFK FT++LNCY+++  +G T C+ +
Sbjct  942   RLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPEE  1001

Query  956   LKKSLVDNNMIYGDGSSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPGS  1014
             LK  L +  MIY++ S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IKVDV KYPG 
Sbjct  1002  LKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPGE  1061

Query  1015  VSAKGESVTENISLYSNPTKWFAGNMQSTGLWAPAQQDVTIKss-asvpvtvtvaLADDL  1073
             V++++ +    + + +N + WFAGN Q+TG WA A+Q  ++  S  + PVT+T+ALADDL
Sbjct  1062  VTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADDL  1121

Query  1074  TGREKHEVALNRPPRVTKTYTLEANGE--VTFKVPYGGLIYIKGDSKDDVSANFTFTGVV  1131
             TGREKHE++L+RPPR++K++ + +++    TF VPYGGLIY +G++ ++V  ++TF+G +
Sbjct  1122  TGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNSQQV--KLTFSGTI  1179

Query  1132  KAPFYKDGEWKNDLDSPAPLGELESASFVYTTPKKNLEASNFTGGVAEFAKDLDTFASSM  1191
              AP+Y DG W+N L S AP+GE+ S +F++T+PK NL+A  + GG+ +FAKDLD F++ +
Sbjct  1180  DAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADL  1239

Query  1192  NDFYGRND--EDGKHRMFTYKNLTGHKHRFTNDVQISIGDAHSGYPVMNSSFstnsttlp  1249
             NDFY+R++  +++K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +L 
Sbjct  1240  NDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLN  1299

Query  1250  ttplnDWLIWHEVGHNAAETPLNVPGATEVANNVLALYMQDRYLGKMNRVADDITVAPEY  1309
             T PLN WL+WHEVGHN+AE+P+NV GATEV NN+LALYMQDR  GKM+RV +DI  A ++
Sbjct  1300  TMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFDF  1359

Query  1310  LDESNGQAWARGGAGDRLLMYAQLKEWAEENFDIKQWYPDGELPKFYSDRKGMKGWNLFQ  1369
             ++  +G+AW+ GGAG+RL+M+AQLKEWAE +FDI++WY D  LP FY +  G+KGWNLF+
Sbjct  1360  VNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYND-KLPGFYIEESGIKGWNLFK  1418

Query  1370  LMHRKARGDDVGNSTFGGKNYCAESNGNAADTLMLCASWVAQADLSEFFKKWNPGASAYQ  1429
             LMHR  R ++ ++    G N C  S    +D LMLCAS  AQ+DLSEFFK WNPG+ A+ 
Sbjct  1419  LMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKAFL  1478

Query  1430  LPGATEMSFQGGVSSSAYSTLASLKLPKPEKGPETINKVTEH  1471
              P+  +  ++GG+++S+   + SLKL  P+K P +IN VT+H
Sbjct  1479  YPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQH  1520

40) yghJ in NC_007946


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1160 bits (4399),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 717/1482 (49%), Positives = 1052/1482 (71%), Gaps = 81/1482 (5%)

Query  94    LTLGGSQRVTGAT-CNGESSDGFTFTPGNTVSCVVGSTTIATFNTQSEAARSLRAVDKVS  152
             +TL+G+ +  ++  CN++ +  F ++  + V C + + +IATF +  +A ++ R  D   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  153   FSLEDAQELANSENKKTNAISLVTSSDSCPADAEQLCLTFSSVVDRARFEKLYKQ-IDLA  211
             +SL  A+E  +S  ++ N   L+ +  +   +++++ L F S +D   FE+  ++ +DL+
Sbjct  120   LSLISADEYRDSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDLP  177

Query  212   TDNFSKLVNEEVENNAATDKApsthtstvvpvttEGTKPDLNASFVSANAEQFYQYQPTE  271
              D+F   + E + N+   DK PSTH + + P  T GT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTD  237

Query  272   IILSEGQLVDSLGNGVAGVDYYTNSGRGVTD--------ENGKFSFSWGETISFGIDTFE  323
             +I S G+L+DS G  + GV Y++N+ RG+T+        ++G F FSWG+ ISF+IDTFE
Sbjct  238   VIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFE  297

Query  324   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVINE  383
             LGS R+NK+ + ++ELG +  G N + LIHRY++ ++++  ++PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKL-IIPDKVTQIFSLYPNVINE  356

Query  384   IINLSLSNGAT-LDEGDQNV-VLPNEFIEQFKTGQAKEIDTAICA----KTDGCNEARWF  437
             +I+LSL+NG   LD GD +  ++P EF+ QF +G A  ID +I +    K ++    +  
Sbjct  357   VISLSLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKK--  414

Query  438   SLTTRNVNDGQIQGVINKLWGVDTNYQS-----VSKFHVFHDSTNFYGSTGNARGQAVVN  492
               ++ + + +QIQ++INKLWG     Q+     V +FH+FHDSTNFYGSTG+AR+QA VN
Sbjct  415   -KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVN  473

Query  493   ISNSAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVQPENVTRDTATFNLPFIS  552
             I+NSAFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFIS
Sbjct  474   IANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFIS  533

Query  553   LGQVGEGKLMVIGNPHYNSILRCPNGYSWGGGVNSKGECTLSGDSDDMKHFMQNVLRYLS  612
             LG++G GKLMV+GN++YNS+L CPNG+SWGG V+ +G C+LS+D DDM +F  NV+RYL+
Sbjct  534   LGEIGKGKLMVLGNARYNSVLVCPNGFSWGGTVK-NGTCSLSSDRDDMANFFSNVIRYLT  592

Query  613   NDIWQPNTKSIMTVGTNLENVYFKKAGQVLGNSAPFAFHEDFTGITVKQLTSYGDLNPEE  672
                   +T + + VGTN+ +VYFK +GQ +G+ A F ++  F+  T +QLTS+ DL+ + 
Sbjct  593   G-----STSNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSKQT-QQLTSFHDLDVNT  646

Query  673   IPLLILNGFEYVTQWSGDPYAVPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMSN  732
             IPL+I+N+++Y  +    PY +PL AD + PKL++ DVTDLI Y+N+GGSVL+ME +++ 
Sbjct  647   IPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIINT  706

Query  733   LKEESASSFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQRRATGIWVYERYPAADG  789
                 + S + RLLD+AG++ ++ +SVV ++   + G PDR R +R  GIWV ERY+A ++
Sbjct  707   ----NNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVED  762

Query  790   AQP-----PYTIDPNTGEVTWKYQQDNKPDDKPKLEVASW-QEEVEGKQVTRYAFIDEAE  843
               +     PY I+++ G + WKY  +N+PDDKPKLEVASW + E  +K +T+YAFIDE++
Sbjct  763   ESSGQQTLPYVINSD-GSIEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDESQ  821

Query  844   Y------------------TTEESLEAAKAKIFEKF------PGLQECKDSTYHYEINCL  879
                                  + SL  AK K+++ F       +  ECK+S +HYEINCL
Sbjct  822   HWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINCL  881

Query  880   ERRPGTDVPVTGGMYVPRYTQLNLDADTAKAMVQAADLGTNIQRLYQHELYFRTKGSKGE  939
             E RPG  +P+TGG+YVPRYT+++L+   A+AMV+AA+LGTNI+ LYQHE YFRTKG  G 
Sbjct  882   EYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSGA  941

Query  940   RLNSVDLERLYQNMSVWLWNDTKYRYEEGKEDELGFKTFTEFLNCYANDAYAGGTKCSAD  999
             RLNSVDL+R+YQNMSVWLWND  YRY++ + DELGFK FT++LNCY+++  +G T C+ +
Sbjct  942   RLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPEE  1001

Query  1000  LKKSLVDNNMIYGDGSSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPGS  1058
             LK  L +  MIY++ S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IKVDV KYPG 
Sbjct  1002  LKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPGE  1061

Query  1059  VSAKGESVTENISLYSNPTKWFAGNMQSTGLWAPAQQDVTIKss-asvpvtvtvaLADDL  1117
             V++++ +    + + +N + WFAGN Q+TG WA A+Q  ++  S  + PVT+T+ALADDL
Sbjct  1062  VTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADDL  1121

Query  1118  TGREKHEVALNRPPRVTKTYTLEANGE--VTFKVPYGGLIYIKGDSKDDVSANFTFTGVV  1175
             TGREKHE++L+RPPR++K++ + +++    TF VPYGGLIY +G++ ++V  ++TF+G +
Sbjct  1122  TGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNSQQV--KLTFSGTI  1179

Query  1176  KAPFYKDGEWKNDLDSPAPLGELESASFVYTTPKKNLEASNFTGGVAEFAKDLDTFASSM  1235
              AP+Y DG W+N L S AP+GE+ S +F++T+PK NL+A  + GG+ +FAKDLD F++ +
Sbjct  1180  DAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADL  1239

Query  1236  NDFYGRND--EDGKHRMFTYKNLTGHKHRFTNDVQISIGDAHSGYPVMNSSFstnsttlp  1293
             NDFY+R++  +++K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +L 
Sbjct  1240  NDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLN  1299

Query  1294  ttplnDWLIWHEVGHNAAETPLNVPGATEVANNVLALYMQDRYLGKMNRVADDITVAPEY  1353
             T PLN WL+WHEVGHN+AE+P+NV GATEV NN+LALYMQDR  GKM+RV +DI  A ++
Sbjct  1300  TMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFDF  1359

Query  1354  LDESNGQAWARGGAGDRLLMYAQLKEWAEENFDIKQWYPDGELPKFYSDRKGMKGWNLFQ  1413
             ++  +G+AW+ GGAG+RL+M+AQLKEWAE +FDI++WY D  LP FY +  G+KGWNLF+
Sbjct  1360  VNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYND-KLPGFYIEESGIKGWNLFK  1418

Query  1414  LMHRKARGDDVGNSTFGGKNYCAESNGNAADTLMLCASWVAQADLSEFFKKWNPGASAYQ  1473
             LMHR  R ++ ++    G N C  S    +D LMLCAS  AQ+DLSEFFK WNPG+ A+ 
Sbjct  1419  LMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKAFL  1478

Query  1474  LPGATEMSFQGGVSSSAYSTLASLKLPKPEKGPETINKVTEH  1515
              P+  +  ++GG+++S+   + SLKL  P+K P +IN VT+H
Sbjct  1479  YPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQH  1520

41) yghJ in NC_011745


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1157 bits (4388),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 718/1482 (49%), Positives = 1051/1482 (71%), Gaps = 81/1482 (5%)

Query  100   LTLGGSQRVTGAT-CNGESSDGFTFTPGNTVSCVVGSTTIATFNTQSEAARSLRAVDKVS  158
             +TL+G+ +  ++  CN++ +  F ++  + V C + + +IATF +  +A ++ R  D   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  159   FSLEDAQELANSENKKTNAISLVTSSDSCPADAEQLCLTFSSVVDRARFEKLYKQ-IDLA  217
             +SL  A+E  +S  ++ N   L+ +  +   +++++ L F S +D   FE+  ++ +DL+
Sbjct  120   LSLISADEYRDSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDLP  177

Query  218   TDNFSKLVNEEVENNAATDKApsthtstvvpvttEGTKPDLNASFVSANAEQFYQYQPTE  277
              D+F   + E + N+   DK PSTH + + P  T GT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTD  237

Query  278   IILSEGQLVDSLGNGVAGVDYYTNSGRGVTD--------ENGKFSFSWGETISFGIDTFE  329
             +I S G+L+DS G  + GV Y++N+ RG+T+        ++G F FSWG+ ISF+IDTFE
Sbjct  238   VIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFE  297

Query  330   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVINE  389
             LGS R+NK+ + ++ELG +  G N + LIHRY++ ++++  ++PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKL-IIPDKVTQIFSLYPNVINE  356

Query  390   IINLSLSNGAT-LDEGDQNV-VLPNEFIEQFKTGQAKEIDTAICA----KTDGCNEARWF  443
             +I+LSL+NG   LD GD +  ++P EF+ QF +G A  ID +I +    K ++    +  
Sbjct  357   VISLSLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKK--  414

Query  444   SLTTRNVNDGQIQGVINKLWGVDTNYQS-----VSKFHVFHDSTNFYGSTGNARGQAVVN  498
               ++ + + +QIQ++INKLWG     Q+     V +FH+FHDSTNFYGSTG+AR+QA VN
Sbjct  415   -KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVN  473

Query  499   ISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVQPENVTRDTATFNLPFIS  558
             I+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFIS
Sbjct  474   IANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFIS  533

Query  559   LGQVGEGKLMVIGNPHYNSILRCPNGYSWGGGVNSKGECTLSGDSDDMKHFMQNVLRYLS  618
             LG++G GKLMV+GN++YNS+L CPNG+SWGG V+ +G C+LS+D DDM +F  NV+RYL+
Sbjct  534   LGEIGKGKLMVLGNARYNSVLVCPNGFSWGGTVK-NGTCSLSSDRDDMANFFSNVIRYLT  592

Query  619   NDIWQPNTKSIMTVGTNLENVYFKKAGQVLGNSAPFAFHEDFTGITVKQLTSYGDLNPEE  678
                   +T + + VGTN+ +VYFK +GQ +G+ A F ++  F+  T +QLTS+ DL+ + 
Sbjct  593   G-----STSNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSKQT-QQLTSFHDLDVNT  646

Query  679   IPLLILNGFEYVTQWSGDPYAVPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMSN  738
             IPL+I+N+++Y  +    PY +PL AD + PKL++ DVTDLI Y+N+GGSVL+ME +++ 
Sbjct  647   IPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIINT  706

Query  739   LKEESASSFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQRRATGIWVYERYPAADG  795
                 + S + RLLD+AG++ ++ +SVV ++   + G PDR R +R  GIWV ERY+A ++
Sbjct  707   ----NNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVED  762

Query  796   AQP-----PYTIDPNTGEVTWKYQQDNKPDDKPKLEVASW-QEEVEGKQVTRYAFIDEAE  849
               +     PY I+++ G + WKY  +N+PDDKPKLEVASW + E  +K +T+YAFIDE++
Sbjct  763   ESSGQQTLPYVINSD-GSIEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDESQ  821

Query  850   Y------------------TTEESLEAAKAKIFEKF------PGLQECKDSTYHYEINCL  885
                                  + SL  AK K+++ F       +  ECK+S +HYEINCL
Sbjct  822   HWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINCL  881

Query  886   ERRPGTDVPVTGGMYVPRYTQLNLDADTAKAMVQAADLGTNIQRLYQHELYFRTKGSKGE  945
             E RPG  +P+TGG+YVPRYT+++L+   A+AMV+AA+LGTNI+ LYQHE YFRTKG  G 
Sbjct  882   EYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSGA  941

Query  946   RLNSVDLERLYQNMSVWLWNDTKYRYEEGKEDELGFKTFTEFLNCYANDAYAGGTKCSAD  1005
             RLNSVDL+R+YQNMSVWLWND  YRY++ + DELGFK FT++LNCY+++  +G T C+ +
Sbjct  942   RLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPEE  1001

Query  1006  LKKSLVDNNMIYGDGSSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPGS  1064
             LK  L +  MIY++ S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IKVDV KYPG 
Sbjct  1002  LKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPGE  1061

Query  1065  VSAKGESVTENISLYSNPTKWFAGNMQSTGLWAPALQDVTIKss-asvpvtvtvaLADDL  1123
             V++++ +    + + +N + WFAGN Q+TG WA A Q  ++  S  + PVT+T+ALADDL
Sbjct  1062  VTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADDL  1121

Query  1124  TGREKHEVALNRPPRVTKTYTLEANGE--VTFKVPYGGLIYIKGDSKDDVSANFTFTGVV  1181
             TGREKHE++L+RPPR++K++ + +++    TF VPYGGLIY +G++ ++V  ++TF+G +
Sbjct  1122  TGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNSQQV--KLTFSGTI  1179

Query  1182  KAPFYKDGEWKNDLDSPAPLGELESASFVYTTPKKNLEASNFTGGVAEFAKDLDTFASSM  1241
              AP+Y DG W+N L S AP+GE+ S +F++T+PK NL+A  + GG+ +FAKDLD F++ +
Sbjct  1180  DAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADL  1239

Query  1242  NDFYGRNETS--GNHRMFTYEALTGHKHRFANDVQISIGDAHSGYPVMNSSFstnsttlp  1299
             NDFY+R+E +  +++R  T  ++  ++H+F NDV IS+G AHSGYPVMN SF T+S +L 
Sbjct  1240  NDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLN  1299

Query  1300  ttplnDWLIWHEVGHNAAETPLNVPGATEVANNVLALYMQDRYLGKMNRVADDITVAPEY  1359
             T PLN WL+WHEVGHN+AE+P+NV GATEV NN+LALYMQDR  GKM+RV +DI  A ++
Sbjct  1300  TMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFDF  1359

Query  1360  LDESNGQAWARGGAGDRLLMYAQLKEWAEKNFDITKWYPDGKLPAFYSEREGMKGWNLFQ  1419
             ++  +G+AW+ GGAG+RL+M+AQLKEWAE +FDI  WY D KLP+FY E  G+KGWNLF+
Sbjct  1360  VNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYND-KLPGFYIEESGIKGWNLFK  1418

Query  1420  LMHRKARGDDVGNSTFGGKNYCAESNGNAADTLMLCASWVAQTDLSEFFKKWNPGANAYQ  1479
             LMHR  R ++ ++    G N C  S    +D LMLCAS  AQTDLSEFFK WNPG++A+ 
Sbjct  1419  LMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKAFL  1478

Query  1480  LPGAAEMSFEGGVSSSAYSTLASLNLPKPEKGPETINKVTEH  1521
              P+ ++  +EGG+++S+   + SL+L  P+K P +IN VT+H
Sbjct  1479  YPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQH  1520

42) acfD in NC_017626


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1155 bits (4379),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 713/1484 (49%), Positives = 1045/1484 (71%), Gaps = 84/1484 (5%)

Query  94    LTLGGSQRITGAT-CNGESSDGFTFTPGDKVTCVAGNNTTIATFDTQSEAARSLRAVEKV  152
             +TL+G+ ++ ++  CN++ +  F ++  D+V C   N  +IATF +  +A ++ R  +  
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTI-NGRSIATFTAPFDANKNGRNTDSE  118

Query  153   SFSLEDAQELAASDDKKSNAVSLVTSSNSCPANTEQVCLTFSSVIESKRFDSLYKQ-IDL  211
              +SL  A+E   S  ++ N   L+ +  +   + +++ L F S +++  F++  ++ +DL
Sbjct  119   VLSLISADEYRDSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDL  176

Query  212   APEEFKKLVNEEVENNAATDKApsthtspvvpvttpgtkpDLNASFVSANAEQFYQYQPT  271
             + ++F   + E + N+   DK PSTH + + P  TPGT ++LN++FVSANAE+   Y PT
Sbjct  177   PKDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPT  236

Query  272   EIILSEGRLVDSMGNGVVGVNYYTSSGRGVTG--------ENGKFNFSWGETISFGIDTF  323
             ++I S GRL+DS G  + GV+Y++++ RG+TG        ++G F+FSWG+ ISF+IDTF
Sbjct  237   DVIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTF  296

Query  324   ELGSVRGNKSTIALTELGDEVRGANIDQLIHRYSQAGKNDEREVPDVVRKVFAAYPNVIN  383
             ELGS R+NK+ + ++ELG +  G N + LIHRY+  + +    +PD V ++F+ YPNVIN
Sbjct  297   ELGSTRANKTDFYISELGKDNEGKNAEALIHRYASID-DSKLIIPDKVTQIFSLYPNVIN  355

Query  384   EIINLSLSNGE-ALSEGDQTFER-TNEFLEQFESGQAKEIDTAICD----SLGGCNSQRW  437
             E+I+LSL+NG+  L  GD   +    EF+ QF+SG A  ID +I       + +  +++ 
Sbjct  356   EVISLSLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKK-  414

Query  438   FSLTARNVNEGQIQGVINKLWGV-----DKDYKSVTKFHVFHDSTNFYGSTGNARGQAVV  492
                +A + + +QIQ++INKLWG       ++ K V +FH+FHDSTNFYGSTG+AR+QA V
Sbjct  415   --KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAV  472

Query  493   NISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSLVEPENVTRDTATFNLPFI  552
             NI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFI
Sbjct  473   NIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFI  532

Query  553   SLGQVGEGKLMVIGNPHYNSILRCPNGYSWEGGVDKNGQCTRNSDSNDMKHFMQNVLRYL  612
             SLG++G GKLMV+GN++YNS+L CPNG+SW G V KNG C+ +SD +DM +F  NV+RYL
Sbjct  533   SLGEIGKGKLMVLGNARYNSVLVCPNGFSWGGTV-KNGTCSLSSDRDDMANFFSNVIRYL  591

Query  613   SNDKWTPDAKASMTVGTNLDTVYFKRHGQVTGNSAEFGFHPDFAGISVEHLSSYGDLDPQ  672
                  T  +   + VGTN+  VYFK  GQ  G+ A+F +++ F+    ++L+S+ DLD +
Sbjct  592   -----TGSTSNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSK-QTQQLTSFHDLDVN  645

Query  673   KMPLLILNGFEYVTQVGGDPYAVPLRADTSKPKLSQQDVTDLIAYLNKGGSVLIMENVMS  732
              +PL+I+N+++Y  +    PY +PL AD + PKLS+ DVTDLI Y+N+GGSVL+ME +++
Sbjct  646   TIPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIIN  705

Query  733   NLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQRRATGIWVYERYPVVE  789
                  + S + RLLD+AG++ ++ +SVV ++   + G PDR R +R  GIWV ERY+ VE
Sbjct  706   T----NNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVE  761

Query  790   GE------LPYTIDSKTGKVTWKYQIDNKPDKKPKLEVASW-QEEVDGKQVTQFAFIDEA  842
             +E      LPY I+S  G + WKY ++N+PD KPKLEVASW + E ++K +T++AFIDE+
Sbjct  762   DESSGQQTLPYVINSD-GSIEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDES  820

Query  843   DH------------------KTTESLDAAKKKILEKFK------GLEECKDSTYHYEINC  878
             +H                      SL  AK+K+L+ FK      +  ECK+S +HYEINC
Sbjct  821   QHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINC  880

Query  879   LEYRPGTNVPATGGMYVPRYTQLNLSADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKG  938
             LEYRPG ++P TGG+YVPRYT+++L+   A+AMV+AA+LGTNI+ LYQHE YFRT+G+ G
Sbjct  881   LEYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSG  940

Query  939   ERLSSVDLERLYQNMSVWLWNEIEYSYDSSKEDELGFKTFTEFLNCYANDAYTGGTQCSD  998
              RL+SVDL+R+YQNMSVWLWN+++Y YD  + DELGFK FT++LNCY+++   G T C++
Sbjct  941   ARLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPE  1000

Query  999   ELKKSLVDNNMIYGEKSVNKAGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPG  1058
             ELK  L +  MIY+EKS + AG M+PSYPLNYMEKPLTRLMLGRS WDL+IKVDV KYPG
Sbjct  1001  ELKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPG  1060

Query  1059  AVSEEGQEVTESISLYSNPTKWFAGNMQSTGLWAPAQKEVTIKSNADV-PVTVTVALADD  1117
              V+  +     ++ + +N + WFAGN Q+TG WA A++  ++  +++  PVT+T+ALADD
Sbjct  1061  EVTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADD  1120

Query  1118  LTGREKHEVALNRPPKVTKTYELKANGE--VKFTVPYGGLIYIKGNSKENNKSASFTFTG  1175
             LTGREKHE++L+RPP+++K++ + +++     FTVPYGGLIY +G + ++ K   +TF+G
Sbjct  1121  LTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNSQQVK---LTFSG  1177

Query  1176  VVKAPFYKNGAWKNALNSPAPLGELESDAFVYTTPKKNLEASNFTGGVAEFAKDLDTFAS  1235
              + AP+Y +G W+N+L S AP+GE+ SD+F++T+PK NL+A  + GG+ +FAKDLD F++
Sbjct  1178  TIDAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSA  1237

Query  1236  SMNDFYGRND--EDGKHRMFTYKNLTGHKHRFTNDVQISIGDAHSGYPVMNSSFstnstt  1293
              +NDFY+R++  +++K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +
Sbjct  1238  DLNDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRS  1297

Query  1294  lpttplnDWLIWHEVGHNAAETPLTVPGATEVANNVLALYMQDRYLGKMNRVADDITVAP  1353
             L T PLN WL+WHEVGHN+AE+P+ V GATEV NN+LALYMQDR  GKM+RV +DI  A 
Sbjct  1298  LNTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAF  1357

Query  1354  EYLEESNNQAWARGGAGDRLLMYAQLKEWAEKNFDIKKWYPDGTPLPEFYSEREGMKGWN  1413
             ++++  + +AW+ GGAG+RL+M+AQLKEWAE +FDI+ WY D   LP FY E  G+KGWN
Sbjct  1358  DFVNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYND--KLPGFYIEESGIKGWN  1415

Query  1414  LFQLMHRKARGDEVSNDKFGGRNYCAESNGNTADTLMLCASWVAQTDLSEFFKKWNPGAN  1473
             LF+LMHR  R ++  + +  G N C  S    +D LMLCAS  AQTDLSEFFK WNPG++
Sbjct  1416  LFKLMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSK  1475

Query  1474  AYQLPGATEMSFEGGVSQSAYNTLASLDLPKPKQGPETINKVTE  1517
             A+  P+  +  +EGG++ S+ + + SL L  P++ P +IN VT+
Sbjct  1476  AFLYPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQ  1519

43) O3M_04130 in NC_018650


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1155 bits (4379),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 724/1484 (49%), Positives = 1045/1484 (71%), Gaps = 86/1484 (5%)

Query  50    LTLGGSLRVTGDITCNDESSDGFTFTPGDKVTCVAGNNTTIATFDTQSEAARSLRAVEKV  109
             +TL+G+L+  + + CND+ +  F ++  D+V C   N  +IATF +  +A ++ R  +  
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTI-NGRSIATFTAPFDANKNGRNTDSE  118

Query  110   SFSLEDAQELAGSDNKKSNALSLVTSMNSCPANTEQVCLEFSSVIESKRFDSLYKQ-IDL  168
              +SL  A+E  +S  ++ N   L+ +M +   + +++ L F S +++  F++  ++ +DL
Sbjct  119   VLSLISADEYRDSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDL  176

Query  169   APEEFKKLVNEEVENNAATDKAPSTHTSPVVPATTPGTKPDLNASFVSANAEQFYQYQPT  228
             + ++F   + E + N+   DK PSTH + + P+ TPGT ++LN++FVSANAE+   Y PT
Sbjct  177   PKDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPT  236

Query  229   EIILSEGRLVDSQGDGVVGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTF  280
             ++I S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ ISF+IDTF
Sbjct  237   DVIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTF  296

Query  281   ELGSVRGNKSTIALTELGDEVRGANIDQLIHRYSKAGQNHTRVVPDEVRKVFAEYPNVIN  340
             ELGS R+NK+ + ++ELG +  G N + LIHRY+  +++   ++PD V ++F+ YPNVIN
Sbjct  297   ELGSTRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKL-IIPDKVTQIFSLYPNVIN  355

Query  341   EIINLSLSNGAT---LGEGEQVVNLPNEFIEQFKTGQAKEIDTAICA----KTDGCNEAR  393
             E+I+LSL+NG     +G+G   + +P EF+ QF +G A  ID +I +    K ++    +
Sbjct  356   EVISLSLPNGDIELDIGDGKTQI-VPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKK  414

Query  394   WFSLTTRNVNDGQIQGVINKLWGVDTNY-----KSVSKFHVFHDSTNFYGSTGNARGQAV  448
                 ++ + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA 
Sbjct  415   ---KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAA  471

Query  449   VNISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVRPENVTRETATFNLPF  508
             VNI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ +T+TFNLPF
Sbjct  472   VNIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPF  531

Query  509   ISLGQVGDGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENVLRY  568
             ISLG++G GKLMV+GN++YNS+L CPNG+SW G V K+G C+L+SD DDM NF  NV+RY
Sbjct  532   ISLGEIGKGKLMVLGNARYNSVLVCPNGFSWGGTV-KNGTCSLSSDRDDMANFFSNVIRY  590

Query  569   LSNDRWLPDAKSSMTVGTNLDTVYFKKHGQVLGNSAPFAFHKDFTGITVKPMTSYGNLNP  628
             L+       + + + VGTN+  VYFK  GQ +G+ A F ++  F+  T + +TS+ +L+ 
Sbjct  591   LTGS-----TSNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSKQT-QQLTSFHDLDV  644

Query  629   DEVPLLILNGFEYVTQWGSDPYSIPLRADTSKPKLTQQDVTDLIAYMNKGGSVLIMENVM  688
             + +PL+I+N+++Y  +  + PY IPL AD + PKL++ DVTDLI Y+N+GGSVL+ME ++
Sbjct  645   NTIPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETII  704

Query  689   SNLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQRRSTPIWVYERYPAV  745
             +     + S + RLLD+AG++ ++ +SVV ++   + G PDR R +R   IWV ERY+AV
Sbjct  705   NT----NNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAV  760

Query  746   DGKP------PYTIDDTTKEVIWKYQQENKPDDKPKLEVASW-QEEVEGKQVTQFAFIDE  798
             ++ +      PY I+     + WKY  EN+PDDKPKLEVASW + E  +K +T++AFIDE
Sbjct  761   EDESSGQQTLPYVINSDGS-IEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDE  819

Query  799   ADH--------------KTPE----SLAAAKQRILDAF------PGLEVCKDSDYHYEVN  834
             ++H                PE    SL+ AK+++LDAF       +   CK+S++HYE+N
Sbjct  820   SQHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEIN  879

Query  835   CLEYRPGTGVPVTGGMYVPQYTQLDLGADTAKAMLQAADLGTNIQRLYQHELYFRTNGLQ  894
             CLEYRPG ++P+TGG+YVP+YT++ LG   A+AM++AA+LGTNI+ LYQHE YFRT+G  
Sbjct  880   CLEYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKS  939

Query  895   GERLNSVDLERLYQNMSVWLWNETKYRYEEGKEDELGFKTFTEFLNCYTNNAYVG-TQCS  953
             G RLNSVDL+R+YQNMSVWLWN+  YRY++ + DELGFK FT++LNCYT+N   G T C+
Sbjct  940   GARLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCP  999

Query  954   AELKKSLIDNKMIYGEESSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYP  1012
              ELK  L +  MIY+E S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IKVDV KYP
Sbjct  1000  EELKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYP  1059

Query  1013  GVVNTNGETVTQNINLYSAPTKWFAGNMQSTGLWAPAQQEVSIE-SKatvpvtvtvalaD  1071
             G V T +      +++ +  + WFAGN Q+TG WA A+Q  S+  S  T PVT+T+ALAD
Sbjct  1060  GEVTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALAD  1119

Query  1072  DLTGREKHEVSLNRPPRVTKTYDLKAND--KVTFKVPYGGLIYIKGDSKEVQSADFTFTG  1129
             DLTGREKHE++L+RPPR++K++ + ++     TF VPYGGLIY +G++   Q   +TF+G
Sbjct  1120  DLTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNS--QQVKLTFSG  1177

Query  1130  VVKAPFYKDGKWQHDLNSPAPLGELESASFVYTTPKKNLNASNYTGGLEQFANDLDTFAS  1189
              + AP+Y DGKW++ L S AP+GE+ S +F++T+PK NLNA  Y GG+EQFA+DLD F++
Sbjct  1178  TIDAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSA  1237

Query  1190  SMNDFYGRD--SEDGKHRMFTYKNLPGHKHRFANDVQISIGDAHSGYPVMnssfspnstt  1247
              +NDFY+RD  ++++K+R  T K++P ++H+F NDV IS+G AHSGYPVMN SF  +S +
Sbjct  1238  DLNDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRS  1297

Query  1248  lpttplnDWLIWHEVGHNAAETPLTVPGATEVANNVLALYMQDRYLGKMNRVADDITVAP  1307
             L T PLN WL+WHEVGHN+AE+P+ V GATEV NN+LALYMQDR  GKM+RV +DI  A 
Sbjct  1298  LNTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAF  1357

Query  1308  EYLEESNGQAWARGGAGDRLLMYAQLKEWAEKNFDIKKWYPDGTPLPEFYSEREGMKGWN  1367
             ++++  +G+AW+ GGAG+RL+M+AQLKEWAE +FDI+ WY D   LP FY E  G+KGWN
Sbjct  1358  DFVNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYND--KLPGFYIEESGIKGWN  1415

Query  1368  LFQLMHRKARGDEVSNDKFGGKNYCAESNGNAADTLMLCASWVAQTDLSEFFKKWNPGAN  1427
             LF+LMHR  R ++  + +  G N C  S    +D LMLCAS  AQTDLSEFFK WNPG++
Sbjct  1416  LFKLMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSK  1475

Query  1428  AYQLPGATEMSFEGGVSQSAYNTLASLNLPKPKQGPETINKVTE  1471
             A+  P+  +  +EGG++ S+ + + SL+L  P++ P +IN VT+
Sbjct  1476  AFLYPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQ  1519

44) O3O_21560 in NC_018661


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1155 bits (4379),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 724/1484 (49%), Positives = 1045/1484 (71%), Gaps = 86/1484 (5%)

Query  50    LTLGGSLRVTGDITCNDESSDGFTFTPGDKVTCVAGNNTTIATFDTQSEAARSLRAVEKV  109
             +TL+G+L+  + + CND+ +  F ++  D+V C   N  +IATF +  +A ++ R  +  
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTI-NGRSIATFTAPFDANKNGRNTDSE  118

Query  110   SFSLEDAQELAGSDNKKSNALSLVTSMNSCPANTEQVCLEFSSVIESKRFDSLYKQ-IDL  168
              +SL  A+E  +S  ++ N   L+ +M +   + +++ L F S +++  F++  ++ +DL
Sbjct  119   VLSLISADEYRDSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDL  176

Query  169   APEEFKKLVNEEVENNAATDKAPSTHTSPVVPATTPGTKPDLNASFVSANAEQFYQYQPT  228
             + ++F   + E + N+   DK PSTH + + P+ TPGT ++LN++FVSANAE+   Y PT
Sbjct  177   PKDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPT  236

Query  229   EIILSEGRLVDSQGDGVVGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTF  280
             ++I S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ ISF+IDTF
Sbjct  237   DVIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTF  296

Query  281   ELGSVRGNKSTIALTELGDEVRGANIDQLIHRYSKAGQNHTRVVPDEVRKVFAEYPNVIN  340
             ELGS R+NK+ + ++ELG +  G N + LIHRY+  +++   ++PD V ++F+ YPNVIN
Sbjct  297   ELGSTRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKL-IIPDKVTQIFSLYPNVIN  355

Query  341   EIINLSLSNGAT---LGEGEQVVNLPNEFIEQFKTGQAKEIDTAICA----KTDGCNEAR  393
             E+I+LSL+NG     +G+G   + +P EF+ QF +G A  ID +I +    K ++    +
Sbjct  356   EVISLSLPNGDIELDIGDGKTQI-VPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKK  414

Query  394   WFSLTTRNVNDGQIQGVINKLWGVDTNY-----KSVSKFHVFHDSTNFYGSTGNARGQAV  448
                 ++ + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA 
Sbjct  415   ---KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAA  471

Query  449   VNISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVRPENVTRETATFNLPF  508
             VNI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ +T+TFNLPF
Sbjct  472   VNIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPF  531

Query  509   ISLGQVGDGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENVLRY  568
             ISLG++G GKLMV+GN++YNS+L CPNG+SW G V K+G C+L+SD DDM NF  NV+RY
Sbjct  532   ISLGEIGKGKLMVLGNARYNSVLVCPNGFSWGGTV-KNGTCSLSSDRDDMANFFSNVIRY  590

Query  569   LSNDRWLPDAKSSMTVGTNLDTVYFKKHGQVLGNSAPFAFHKDFTGITVKPMTSYGNLNP  628
             L+       + + + VGTN+  VYFK  GQ +G+ A F ++  F+  T + +TS+ +L+ 
Sbjct  591   LTGS-----TSNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSKQT-QQLTSFHDLDV  644

Query  629   DEVPLLILNGFEYVTQWGSDPYSIPLRADTSKPKLTQQDVTDLIAYMNKGGSVLIMENVM  688
             + +PL+I+N+++Y  +  + PY IPL AD + PKL++ DVTDLI Y+N+GGSVL+ME ++
Sbjct  645   NTIPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETII  704

Query  689   SNLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQRRSTPIWVYERYPAV  745
             +     + S + RLLD+AG++ ++ +SVV ++   + G PDR R +R   IWV ERY+AV
Sbjct  705   NT----NNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAV  760

Query  746   DGKP------PYTIDDTTKEVIWKYQQENKPDDKPKLEVASW-QEEVEGKQVTQFAFIDE  798
             ++ +      PY I+     + WKY  EN+PDDKPKLEVASW + E  +K +T++AFIDE
Sbjct  761   EDESSGQQTLPYVINSDGS-IEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDE  819

Query  799   ADH--------------KTPE----SLAAAKQRILDAF------PGLEVCKDSDYHYEVN  834
             ++H                PE    SL+ AK+++LDAF       +   CK+S++HYE+N
Sbjct  820   SQHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEIN  879

Query  835   CLEYRPGTGVPVTGGMYVPQYTQLDLGADTAKAMLQAADLGTNIQRLYQHELYFRTNGLQ  894
             CLEYRPG ++P+TGG+YVP+YT++ LG   A+AM++AA+LGTNI+ LYQHE YFRT+G  
Sbjct  880   CLEYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKS  939

Query  895   GERLNSVDLERLYQNMSVWLWNETKYRYEEGKEDELGFKTFTEFLNCYTNNAYVG-TQCS  953
             G RLNSVDL+R+YQNMSVWLWN+  YRY++ + DELGFK FT++LNCYT+N   G T C+
Sbjct  940   GARLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCP  999

Query  954   AELKKSLIDNKMIYGEESSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYP  1012
              ELK  L +  MIY+E S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IKVDV KYP
Sbjct  1000  EELKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYP  1059

Query  1013  GVVNTNGETVTQNINLYSAPTKWFAGNMQSTGLWAPAQQEVSIE-SKatvpvtvtvalaD  1071
             G V T +      +++ +  + WFAGN Q+TG WA A+Q  S+  S  T PVT+T+ALAD
Sbjct  1060  GEVTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALAD  1119

Query  1072  DLTGREKHEVSLNRPPRVTKTYDLKAND--KVTFKVPYGGLIYIKGDSKEVQSADFTFTG  1129
             DLTGREKHE++L+RPPR++K++ + ++     TF VPYGGLIY +G++   Q   +TF+G
Sbjct  1120  DLTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNS--QQVKLTFSG  1177

Query  1130  VVKAPFYKDGKWQHDLNSPAPLGELESASFVYTTPKKNLNASNYTGGLEQFANDLDTFAS  1189
              + AP+Y DGKW++ L S AP+GE+ S +F++T+PK NLNA  Y GG+EQFA+DLD F++
Sbjct  1178  TIDAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSA  1237

Query  1190  SMNDFYGRD--SEDGKHRMFTYKNLPGHKHRFANDVQISIGDAHSGYPVMnssfspnstt  1247
              +NDFY+RD  ++++K+R  T K++P ++H+F NDV IS+G AHSGYPVMN SF  +S +
Sbjct  1238  DLNDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRS  1297

Query  1248  lpttplnDWLIWHEVGHNAAETPLTVPGATEVANNVLALYMQDRYLGKMNRVADDITVAP  1307
             L T PLN WL+WHEVGHN+AE+P+ V GATEV NN+LALYMQDR  GKM+RV +DI  A 
Sbjct  1298  LNTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAF  1357

Query  1308  EYLEESNGQAWARGGAGDRLLMYAQLKEWAEKNFDIKKWYPDGTPLPEFYSEREGMKGWN  1367
             ++++  +G+AW+ GGAG+RL+M+AQLKEWAE +FDI+ WY D   LP FY E  G+KGWN
Sbjct  1358  DFVNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYND--KLPGFYIEESGIKGWN  1415

Query  1368  LFQLMHRKARGDEVSNDKFGGKNYCAESNGNAADTLMLCASWVAQTDLSEFFKKWNPGAN  1427
             LF+LMHR  R ++  + +  G N C  S    +D LMLCAS  AQTDLSEFFK WNPG++
Sbjct  1416  LFKLMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSK  1475

Query  1428  AYQLPGATEMSFEGGVSQSAYNTLASLNLPKPKQGPETINKVTE  1471
             A+  P+  +  +EGG++ S+ + + SL+L  P++ P +IN VT+
Sbjct  1476  AFLYPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQ  1519

45) O3K_04095 in NC_018658


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1155 bits (4379),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 724/1484 (49%), Positives = 1045/1484 (71%), Gaps = 86/1484 (5%)

Query  50    LTLGGSLRVTGDITCNDESSDGFTFTPGDKVTCVAGNNTTIATFDTQSEAARSLRAVEKV  109
             +TL+G+L+  + + CND+ +  F ++  D+V C   N  +IATF +  +A ++ R  +  
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTI-NGRSIATFTAPFDANKNGRNTDSE  118

Query  110   SFSLEDAQELAGSDNKKSNALSLVTSMNSCPANTEQVCLEFSSVIESKRFDSLYKQ-IDL  168
              +SL  A+E  +S  ++ N   L+ +M +   + +++ L F S +++  F++  ++ +DL
Sbjct  119   VLSLISADEYRDSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDL  176

Query  169   APEEFKKLVNEEVENNAATDKAPSTHTSPVVPATTPGTKPDLNASFVSANAEQFYQYQPT  228
             + ++F   + E + N+   DK PSTH + + P+ TPGT ++LN++FVSANAE+   Y PT
Sbjct  177   PKDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPT  236

Query  229   EIILSEGRLVDSQGDGVVGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTF  280
             ++I S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ ISF+IDTF
Sbjct  237   DVIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTF  296

Query  281   ELGSVRGNKSTIALTELGDEVRGANIDQLIHRYSKAGQNHTRVVPDEVRKVFAEYPNVIN  340
             ELGS R+NK+ + ++ELG +  G N + LIHRY+  +++   ++PD V ++F+ YPNVIN
Sbjct  297   ELGSTRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKL-IIPDKVTQIFSLYPNVIN  355

Query  341   EIINLSLSNGAT---LGEGEQVVNLPNEFIEQFKTGQAKEIDTAICA----KTDGCNEAR  393
             E+I+LSL+NG     +G+G   + +P EF+ QF +G A  ID +I +    K ++    +
Sbjct  356   EVISLSLPNGDIELDIGDGKTQI-VPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKK  414

Query  394   WFSLTTRNVNDGQIQGVINKLWGVDTNY-----KSVSKFHVFHDSTNFYGSTGNARGQAV  448
                 ++ + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA 
Sbjct  415   ---KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAA  471

Query  449   VNISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVRPENVTRETATFNLPF  508
             VNI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ +T+TFNLPF
Sbjct  472   VNIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPF  531

Query  509   ISLGQVGDGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENVLRY  568
             ISLG++G GKLMV+GN++YNS+L CPNG+SW G V K+G C+L+SD DDM NF  NV+RY
Sbjct  532   ISLGEIGKGKLMVLGNARYNSVLVCPNGFSWGGTV-KNGTCSLSSDRDDMANFFSNVIRY  590

Query  569   LSNDRWLPDAKSSMTVGTNLDTVYFKKHGQVLGNSAPFAFHKDFTGITVKPMTSYGNLNP  628
             L+       + + + VGTN+  VYFK  GQ +G+ A F ++  F+  T + +TS+ +L+ 
Sbjct  591   LTGS-----TSNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSKQT-QQLTSFHDLDV  644

Query  629   DEVPLLILNGFEYVTQWGSDPYSIPLRADTSKPKLTQQDVTDLIAYMNKGGSVLIMENVM  688
             + +PL+I+N+++Y  +  + PY IPL AD + PKL++ DVTDLI Y+N+GGSVL+ME ++
Sbjct  645   NTIPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETII  704

Query  689   SNLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQRRSTPIWVYERYPAV  745
             +     + S + RLLD+AG++ ++ +SVV ++   + G PDR R +R   IWV ERY+AV
Sbjct  705   NT----NNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAV  760

Query  746   DGKP------PYTIDDTTKEVIWKYQQENKPDDKPKLEVASW-QEEVEGKQVTQFAFIDE  798
             ++ +      PY I+     + WKY  EN+PDDKPKLEVASW + E  +K +T++AFIDE
Sbjct  761   EDESSGQQTLPYVINSDGS-IEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDE  819

Query  799   ADH--------------KTPE----SLAAAKQRILDAF------PGLEVCKDSDYHYEVN  834
             ++H                PE    SL+ AK+++LDAF       +   CK+S++HYE+N
Sbjct  820   SQHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEIN  879

Query  835   CLEYRPGTGVPVTGGMYVPQYTQLDLGADTAKAMLQAADLGTNIQRLYQHELYFRTNGLQ  894
             CLEYRPG ++P+TGG+YVP+YT++ LG   A+AM++AA+LGTNI+ LYQHE YFRT+G  
Sbjct  880   CLEYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKS  939

Query  895   GERLNSVDLERLYQNMSVWLWNETKYRYEEGKEDELGFKTFTEFLNCYTNNAYVG-TQCS  953
             G RLNSVDL+R+YQNMSVWLWN+  YRY++ + DELGFK FT++LNCYT+N   G T C+
Sbjct  940   GARLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCP  999

Query  954   AELKKSLIDNKMIYGEESSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYP  1012
              ELK  L +  MIY+E S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IKVDV KYP
Sbjct  1000  EELKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYP  1059

Query  1013  GVVNTNGETVTQNINLYSAPTKWFAGNMQSTGLWAPAQQEVSIE-SKatvpvtvtvalaD  1071
             G V T +      +++ +  + WFAGN Q+TG WA A+Q  S+  S  T PVT+T+ALAD
Sbjct  1060  GEVTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALAD  1119

Query  1072  DLTGREKHEVSLNRPPRVTKTYDLKAND--KVTFKVPYGGLIYIKGDSKEVQSADFTFTG  1129
             DLTGREKHE++L+RPPR++K++ + ++     TF VPYGGLIY +G++   Q   +TF+G
Sbjct  1120  DLTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNS--QQVKLTFSG  1177

Query  1130  VVKAPFYKDGKWQHDLNSPAPLGELESASFVYTTPKKNLNASNYTGGLEQFANDLDTFAS  1189
              + AP+Y DGKW++ L S AP+GE+ S +F++T+PK NLNA  Y GG+EQFA+DLD F++
Sbjct  1178  TIDAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSA  1237

Query  1190  SMNDFYGRD--SEDGKHRMFTYKNLPGHKHRFANDVQISIGDAHSGYPVMnssfspnstt  1247
              +NDFY+RD  ++++K+R  T K++P ++H+F NDV IS+G AHSGYPVMN SF  +S +
Sbjct  1238  DLNDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRS  1297

Query  1248  lpttplnDWLIWHEVGHNAAETPLTVPGATEVANNVLALYMQDRYLGKMNRVADDITVAP  1307
             L T PLN WL+WHEVGHN+AE+P+ V GATEV NN+LALYMQDR  GKM+RV +DI  A 
Sbjct  1298  LNTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAF  1357

Query  1308  EYLEESNGQAWARGGAGDRLLMYAQLKEWAEKNFDIKKWYPDGTPLPEFYSEREGMKGWN  1367
             ++++  +G+AW+ GGAG+RL+M+AQLKEWAE +FDI+ WY D   LP FY E  G+KGWN
Sbjct  1358  DFVNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYND--KLPGFYIEESGIKGWN  1415

Query  1368  LFQLMHRKARGDEVSNDKFGGKNYCAESNGNAADTLMLCASWVAQTDLSEFFKKWNPGAN  1427
             LF+LMHR  R ++  + +  G N C  S    +D LMLCAS  AQTDLSEFFK WNPG++
Sbjct  1416  LFKLMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSK  1475

Query  1428  AYQLPGATEMSFEGGVSQSAYNTLASLNLPKPKQGPETINKVTE  1471
             A+  P+  +  +EGG++ S+ + + SL+L  P++ P +IN VT+
Sbjct  1476  AFLYPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQ  1519

46) EcSMS35_3251 in NC_010498


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1155 bits (4381),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 713/1483 (49%), Positives = 1049/1483 (71%), Gaps = 85/1483 (5%)

Query  94    LTLGGSQRVTGAT-CNGESSDGFTFKPGEDVTCVAGNTTIATFNTQSEAARSLRAVEKVS  152
             +TL+G+ +  ++  CN++ +  F +   ++V C     +IATF +  +A ++ R  +   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  153   FSLEDAQELAGSDDKKSNAVSLVTSSNSCPANTEQVCLTFSSVIESKRFDSLYKQ-IDLA  211
             +SL  A+E  +S  ++ N   L+ +  +   + +++ L F S +++  F++  ++ +DL+
Sbjct  120   LSLISADEYRDSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDLP  177

Query  212   PEEFKKLVNEEVENNAATDKApsthtspvvpvttpgtkpDLNASFVSANAEQFYQYQPTE  271
              ++F   + E + N+   DK PSTH + + P  TPGT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTD  237

Query  272   IILSEGRLVDSQGYGVAGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTFE  323
             +I S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ ISF+IDTFE
Sbjct  238   VIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFE  297

Query  324   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPEDVRKVFAEYPNVINE  383
             LGS R+NK+ + ++ELG +  G N + LIHRY++ ++++  ++P+ V ++F+ YPNVINE
Sbjct  298   LGSTRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKL-IIPDKVTQIFSLYPNVINE  356

Query  384   IINLSLSNGAT---LGEGEQVVNLPNEFIEQFNTGQAKEIDTAICA----KTDGCNEARW  436
             +I+LSL+NG     +G+G   + +P EF+ QF++G A  ID +I +    K ++    + 
Sbjct  357   VISLSLPNGDIELDIGDGKTQI-VPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKK-  414

Query  437   FSLTTRNVNDGQIQGVINKLWGVDTNY-----KSVSKFHVFHDSTNFYGSTGNARGQAVV  491
                ++ + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA V
Sbjct  415   --KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAV  472

Query  492   NISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVRPENVTRETATFNLPFI  551
             NI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ +T+TFNLPFI
Sbjct  473   NIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFI  532

Query  552   SLGQVGDGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENVLRYL  611
             SLG++G GKLMV+GN++YNS+L CPNG+SW G V K+G C+L+SD DDM NF  NV+RYL
Sbjct  533   SLGEIGKGKLMVLGNARYNSVLVCPNGFSWGGTV-KNGTCSLSSDRDDMANFFSNVIRYL  591

Query  612   SNDRWLPDAKSNMTVGTNLDTVYFKKHGQVTGNSAAFGFHPDFAGISVEHLSSYGDLDPQ  671
             +       + +++ VGTN+  VYFK  GQ  G+ A F +++ F+    ++L+S+ DLD +
Sbjct  592   TGS-----TSNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSK-QTQQLTSFHDLDVN  645

Query  672   EMPLLILNGFEYVTQVGNDPYAIPLRADTSKPKLTQQDVTDLIAYMNKGGSVLIMENVMS  731
              +PL+I+N+++Y  +  N PY IPL AD + PKL++ DVTDLI Y+N+GGSVL+ME +++
Sbjct  646   TIPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIIN  705

Query  732   NLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQRRSTPIWVYERYPAVD  788
                  + S + RLLD+AG++ ++ +SVV ++   + G PDR R +R   IWV ERY+AV+
Sbjct  706   T----NNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVE  761

Query  789   GKP------PYTIDDTTKEVIWKYQQENKPDDKPKLEVASW-QEEVEGKQVTQFAFIDEA  841
             + +      PY I+     + WKY  EN+PDDKPKLEVASW + E  +K +T++AFIDE+
Sbjct  762   DESSGQQTLPYVINSDGS-IEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDES  820

Query  842   DH--------------KTPE----SLAAAKKRILDAF------PGLEECKDSDYHYEVNC  877
             +H                PE    SL+ AK+++LDAF       +  ECK+S++HYE+NC
Sbjct  821   QHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINC  880

Query  878   LEYRPGTGVPVTGGMYVPQYTQLSLNADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKG  937
             LEYRPG ++P+TGG+YVP+YT++ L    A+AMV+AA+LGTNI+ LYQHE YFRT+G+ G
Sbjct  881   LEYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSG  940

Query  938   ERLSSVDLERLYQNMSVWLWNKIEYRYENDKDDELGFKTFTEFLNCYANNAYDGGTQCSA  997
              RL+SVDL+R+YQNMSVWLWN ++YRY++ + DELGFK FT++LNCY++N  +G T C+ 
Sbjct  941   ARLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPE  1000

Query  998   ELKQSLIDNKMIYGE--GSKAGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPG  1055
             ELK+ L +  MIY+E  GS AG M+PSYPLNYMEKPLTRLMLGRS WDL+IKVDV KYPG
Sbjct  1001  ELKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPG  1060

Query  1056  AVSAEGEEVTETINLYSNPTKWFAGNMQSTGLWAPAQQEVSIK-SNAKVPVTVTVALADD  1114
              V++ +     T+++ +N + WFAGN Q+TG WA A+Q  S+  S    PVT+T+ALADD
Sbjct  1061  EVTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADD  1120

Query  1115  LTGREKHEVALNRPPRVTKTYSL--DASGTVKFKVPYGGLIYIKSDSKEEKSANFTFTGV  1172
             LTGREKHE++L+RPPR++K++ +  D++    F VPYGGLIY ++++ ++   ++TF+G 
Sbjct  1121  LTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNSQQ--VKLTFSGT  1178

Query  1173  VKAPFYKDGKWKNDLKSPAPLGELESASFVYTTPKKNLEASNYKGGLKQFAEDLDTFASS  1232
             + AP+Y DGKW+N L S AP+GE+ S +F++T+PK NL+A  Y GG+ QFA DLD F++ 
Sbjct  1179  IDAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSAD  1238

Query  1233  MNDFYGRD--GESGKHRMFTYEALTGHKHRFTNDVQISIGDAHSGYPVMnssfspnsttl  1290
             +NDFY+RD  ++++K+R  T  ++  ++H+F NDV IS+G AHSGYPVMN SF  +S +L
Sbjct  1239  LNDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSL  1298

Query  1291  pttplnDWLIWHEVGHNAAETPLTVPGATEVANNVLALYMQDRYLGKMNRVADDITVAPE  1350
              T PLN WL+WHEVGHN+AE+P+ V GATEV NN+LALYMQDR  GKM+RV +DI  A +
Sbjct  1299  NTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFD  1358

Query  1351  YLEESNGQAWARGGAGDRLLMYAQLKEWAEKNFDIKQWYPEGSLPAFYSEREGMKGWNLF  1410
             +++  +G+AW+ GGAG+RL+M+AQLKEWAE +FDI++WY +  LP+FY E  G+KGWNLF
Sbjct  1359  FVNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYND-KLPGFYIEESGIKGWNLF  1417

Query  1411  QLMHRKARGDDVGNDKFGNRNYCAESNGNAADTLMLCASWVAQTDLSAFFKKWNPGANAY  1470
             +LMHR  R ++ ++ +    N C  S    +D LMLCAS  AQTDLS FFK WNPG++A+
Sbjct  1418  KLMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKAF  1477

Query  1471  QLPGATEMSFEGGVSQSAYNTLASLDLPKPEQGPETINQVTEH  1513
               P+  +  +EGG++ S+ + + SL L  P++ P +IN VT+H
Sbjct  1478  LYPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQH  1520

47) yghJ in NC_011748


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1154 bits (4377),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 724/1484 (49%), Positives = 1045/1484 (71%), Gaps = 86/1484 (5%)

Query  100   LTLGGSLRVTGDITCNDESSDGFTFTPGDKVTCVAGNNTTIATFDTQSEAARSLRAVEKV  159
             +TL+G+L+  + + CND+ +  F ++  D+V C   N  +IATF +  +A ++ R  +  
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTI-NGRSIATFTAPFDANKNGRNTDSE  118

Query  160   SFSLEDAQELAGSDNKKSNALSLVTSMNSCPANTEQVCLEFSSVIESKRFDSLYKQ-IDL  218
              +SL  A+E  +S  ++ N   L+ +M +   + +++ L F S +++  F++  ++ +DL
Sbjct  119   VLSLISADEYRDSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDL  176

Query  219   APEEFKKLVNEEVENNAATDKAPSTHTSPVVPATTPGTKPDLNASFVSANAEQFYQYQPT  278
             + ++F   + E + N+   DK PSTH + + P+ TPGT ++LN++FVSANAE+   Y PT
Sbjct  177   PKDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPT  236

Query  279   EIILSEGRLVDSQGDGVVGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTF  330
             ++I S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ ISF+IDTF
Sbjct  237   DVIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTF  296

Query  331   ELGSVRGNKSTIALTELGDEVRGANIDQLIHRYSKAGQNHTRVVPDEVRKVFAEYPNVIN  390
             ELGS R+NK+ + ++ELG +  G N + LIHRY+  +++   ++PD V ++F+ YPNVIN
Sbjct  297   ELGSTRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKL-IIPDKVTQIFSLYPNVIN  355

Query  391   EIINLSLSNGAT---LGEGEQVVNLPNEFIEQFKTGQAKEIDTAICA----KTDGCNEAR  443
             E+I+LSL+NG     +G+G   + +P EF+ QF +G A  ID +I +    K ++    +
Sbjct  356   EVISLSLPNGDIELDIGDGKTQI-VPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKK  414

Query  444   WFSLTTRNVNDGQIQGVINKLWGVDTNY-----KSVSKFHVFHDSTNFYGSTGNARGQAV  498
                 ++ + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA 
Sbjct  415   ---KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAA  471

Query  499   VNISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVRPENVTRETATFNLPF  558
             VNI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ +T+TFNLPF
Sbjct  472   VNIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPF  531

Query  559   ISLGQVGDGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENVLRY  618
             ISLG++G GKLMV+GN++YNS+L CPNG+SW G V K+G C+L+SD DDM NF  NV+RY
Sbjct  532   ISLGEIGKGKLMVLGNARYNSVLVCPNGFSWGGTV-KNGTCSLSSDRDDMANFFSNVIRY  590

Query  619   LSNDRWLPDAKSSMTVGTNLDTVYFKKHGQVLGNSAPFAFHKDFTGITVKPMTSYGNLNP  678
             L+       + + + VGTN+  VYFK  GQ +G+ A F ++  F+  T + +TS+ +L+ 
Sbjct  591   LTGS-----TSNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSKQT-QQLTSFHDLDV  644

Query  679   DEVPLLILNGFEYVTQWGSDPYSIPLRADTSKPKLTQQDVTDLIAYMNKGGSVLIMENVM  738
             + +PL+I+N+++Y  +  + PY IPL AD + PKL++ DVTDLI Y+N+GGSVL+ME ++
Sbjct  645   NTIPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETII  704

Query  739   SNLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQRRSTPIWVYERYPAV  795
             +     + S + RLLD+AG++ ++ +SVV ++   + G PDR R +R   IWV ERY+AV
Sbjct  705   NT----NNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAV  760

Query  796   DGKP------PYTIDDTTKEVIWKYQQENKPDDKPKLEVASW-QEEVEGKQVTQFAFIDE  848
             ++ +      PY I+     + WKY  EN+PDDKPKLEVASW + E  +K +T++AFIDE
Sbjct  761   EDESSGQQTLPYVINSDGS-IEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDE  819

Query  849   ADH--------------KTPE----SLAAAKQRILDAF------PGLEVCKDSDYHYEVN  884
             ++H                PE    SL+ AK+++LDAF       +   CK+S++HYE+N
Sbjct  820   SQHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEIN  879

Query  885   CLEYRPGTGVPVTGGMYVPQYTQLDLGADTAKAMLQAADLGTNIQRLYQHELYFRTNGLQ  944
             CLEYRPG ++P+TGG+YVP+YT++ LG   A+AM++AA+LGTNI+ LYQHE YFRT+G  
Sbjct  880   CLEYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKS  939

Query  945   GERLNSVDLERLYQNMSVWLWNETKYRYEEGKEDELGFKTFTEFLNCYTNNAYVG-TQCS  1003
             G RLNSVDL+R+YQNMSVWLWN+  YRY++ + DELGFK FT++LNCYT+N   G T C+
Sbjct  940   GARLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCP  999

Query  1004  AELKKSLIDNKMIYGEESSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYP  1062
              ELK  L +  MIY+E S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IKVDV KYP
Sbjct  1000  EELKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYP  1059

Query  1063  GVVNTNGETVTQNINLYSAPTKWFAGNMQSTGLWAPAQQEVSIE-SKatvpvtvtvalaD  1121
             G V T +      +++ +  + WFAGN Q+TG WA A+Q  S+  S  T PVT+T+ALAD
Sbjct  1060  GEVTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALAD  1119

Query  1122  DLTGREKHEVSLNRPPRVTKTYDLKAND--KVTFKVPYGGLIYIKGDSKEVQSADFTFTG  1179
             DLTGREKHE++L+RPPR++K++ + ++     TF VPYGGLIY +G++   Q   +TF+G
Sbjct  1120  DLTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNS--QQVKLTFSG  1177

Query  1180  VVKAPFYKDGKWQHDLNSPAPLGELESASFVYTTPKKNLNASNYTGGLEQFANDLDTFAS  1239
              + AP+Y DGKW++ L S AP+GE+ S +F++T+PK NLNA  Y GG+EQFA+DLD F++
Sbjct  1178  TIDAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSA  1237

Query  1240  SMNDFYGRD--SEDGKHRMFTYKNLPGHKHRFANDVQISIGDAHSGYPVMnssfspnstt  1297
              +NDFY+RD  ++++K+R  T K++P ++H+F NDV IS+G AHSGYPVMN SF  +S +
Sbjct  1238  DLNDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRS  1297

Query  1298  lpttplnDWLIWHEVGHNAAETPLTVPGATEVANNVLALYMQDRYLGKMNRVADDITVAP  1357
             L T PLN WL+WHEVGHN+AE+P+ V GATEV NN+LALYMQDR  GKM+RV +DI  A 
Sbjct  1298  LNTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAF  1357

Query  1358  EYLEESNGQAWARGGAGDRLLMYAQLKEWAEKNFDIKKWYPDGTPLPEFYSEREGMKGWN  1417
             ++++  +G+AW+ GGAG+RL+M+AQLKEWAE +FDI+ WY D   LP FY E  G+KGWN
Sbjct  1358  DFVNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYND--KLPGFYIEESGIKGWN  1415

Query  1418  LFQLMHRKARGDEVSNDKFGGKNYCAESNGNAADTLMLCASWVAQTDLSEFFKKWNPGAN  1477
             LF+LMHR  R ++  + +  G N C  S    +D LMLCAS  AQTDLSEFFK WNPG++
Sbjct  1416  LFKLMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSK  1475

Query  1478  AYQLPGATEMSFEGGVSQSAYNTLASLNLPKPKQGPETINKVTE  1521
             A+  P+  +  +EGG++ S+ + + SL+L  P++ P +IN VT+
Sbjct  1476  AFLYPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQ  1519

48) yghJ in NC_012971


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1154 bits (4377),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 710/1482 (48%), Positives = 1056/1482 (72%), Gaps = 82/1482 (5%)

Query  92    LTLGGSQRVTGAT-CNGETSDGFTFTPGEDVTCVAGNTTIATFNTQSEAARSLRAVEKVS  150
             +TL+G+ +  ++  CN++ +  F ++  ++V C     +IATF +  +A ++ R  +   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  151   FSLEDAQELAASDNKKSNAVSLVTSSNSCPADTEQVCLTFSSVIESKRFDSLYKQ-IDLA  209
             +SL  A+E   S  ++ N   L+ +  +  +D  ++ L F S +++  F++  ++ +DL+
Sbjct  120   LSLISADEYRDSPVRQENLQILMKNMATIHGD--KISLVFRSTLDALTFENYLRHNLDLP  177

Query  210   PEEFKKLVNEEVENNAATDKApsthtspvvpvttpgtkpDLNASFVSANAEQFYQYQPSE  269
              ++F   + E + N+   DK PSTH + + P  TPGT ++LN++FVSANAE+   Y P++
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTD  237

Query  270   IILSEGRLVDSQGYGVAGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTFE  321
             +I S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ ISF+IDTFE
Sbjct  238   VIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFE  297

Query  322   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVINE  381
             LGS R+NK+ + ++ELG +  G N + LIHRY++ ++++  ++PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKL-IIPDKVTQIFSLYPNVINE  356

Query  382   IINLSLSNGAT-LDEGEQVVNL-PNEFIEQFKTGQSKEIDTAICA----KTDGCNEARWF  435
             +I+LSL+NG   LD G+   ++ P EF+ QF +G +  ID +I +    K ++    +  
Sbjct  357   VISLSLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKK--  414

Query  436   SLTTRNVNDGQIQGVINKLWGVDTSY-----KSVSKFHVFHDSTNFYGSTGNARGQAVVN  490
               ++ + + +QIQ++INKLWG   +      K V +FH+FHDSTNFYGSTG+AR+QA VN
Sbjct  415   -KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVN  473

Query  491   ISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSLVEPENVTRDTATFNLPFIS  550
             I+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFIS
Sbjct  474   IANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFIS  533

Query  551   LGQVGEGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLSGDSDDMKHFMQNVLRYLS  610
             LG++G GKLMV+GN++YNS+L CPNG+SW G V K+G C+LS+D DDM +F  NV+RYL 
Sbjct  534   LGEIGKGKLMVLGNARYNSVLVCPNGFSWGGTV-KNGTCSLSSDRDDMANFFSNVIRYL-  591

Query  611   DDKWTPDAKASMTVGTNLDTVYFKRHGQVTGNSAEFGFHPDFAGISVEHLSSYGDLDPQE  670
                 T  +   + VGTN+  VYFK  GQ  G+ A+F +++ F+    ++L+S+ DLD + 
Sbjct  592   ----TGSTSNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSK-QTQQLTSFHDLDVNT  646

Query  671   MPLLILNGFEYVTQVGGDPYAVPLRADTSKPKLSQQDVTDLIAYLNKGGSVLIMENVMSN  730
             +PL+I+N+++Y  +    PY +PL AD + PKLS+ DVTDLI Y+N+GGSVL+ME +++ 
Sbjct  647   IPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIINT  706

Query  731   LKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPNRERQRRADGIWVYERYPVVEG  787
                 + S + RLLD+AG++ ++ +SVV ++   + G P+R R +R +GIWV ERY+ VE+
Sbjct  707   ----NNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVED  762

Query  788   ------ALPYTINSETGEVTWKYQIDNKPDKKPKLEVASWQEEVDGEQ-VTQYAFIDEAD  840
                   +LPY INS+ G + WKY ++N+PD KPKLEVASW E   G++ +T+YAFIDE++
Sbjct  763   ESSGQQTLPYVINSD-GSIEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDESQ  821

Query  841   -----------YKT---PEL----LAAAKKRILDAF------PGLEECKDSDYHYEVNCL  876
                        Y+    PE+    L+ AK+++LDAF       +  ECK+S++HYE+NCL
Sbjct  822   HWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINCL  881

Query  877   EYRPGTGVPVTGGMYVPQYTQLSLNADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKGE  936
             EYRPG ++P+TGG+YVP+YT++ L    A+AMV+AA+LGTNI+ LYQHE YFRT+G+ G 
Sbjct  882   EYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSGA  941

Query  937   RLSSVDLERLYQNMSVWLWNKIEYRYENDKDDELGFKTFTEFLNCYANNAYSEGTQCSAD  996
             RL+SVDL+R+YQNMSVWLWN ++YRY++ + DELGFK FT++LNCY++N  +  T C+ +
Sbjct  942   RLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPEE  1001

Query  997   LKKSLVDNNMIYGDGSSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPGA  1055
             LK  L +  MIY++ S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IKVDV KYPG 
Sbjct  1002  LKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPGE  1061

Query  1056  VSAEGEKVTESISLYSNPTKWFAGNMQSTGLWAPAQKEVTIEst-asvpvtvtvaLADDL  1114
             V++ +     ++ + +N + WFAGN Q+TG WA A++  ++  +  + PVT+T+ALADDL
Sbjct  1062  VTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADDL  1121

Query  1115  TGREKHEVALNRPPKVTKTYDLKAND--KVTFKVPYGGLIYIKGNSPKNESAEFTFTGVV  1172
             TGREKHE++L+RPP+++K++ + ++     TF VPYGGLIY +G   +++   +TF+G +
Sbjct  1122  TGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGG--NSQQVKLTFSGTI  1179

Query  1173  KAPFYKDGEWKNALNSPAPLGELESDAFVYTTPKKNLEASNFTGGVAEFANDLDTFASSM  1232
              AP+Y DG W+N+L S AP+GE+ SD+F++T+PK NL+A  + GG+ +FA+DLD F++ +
Sbjct  1180  DAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADL  1239

Query  1233  NDFYGRD--GESGKHRMFTYKALTGHKHRFANDVQISIGDAHSGYPVMNSSFstnsttlp  1290
             NDFY+RD  ++++K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +L 
Sbjct  1240  NDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLN  1299

Query  1291  ttplnDWLIWHEVGHNAAETPLNVPGATEVANNVLALYMQDRYLGKMNRVADDITVAPEY  1350
             T PLN WL+WHEVGHN+AE+P+NV GATEV NN+LALYMQDR  GKM+RV +DI  A ++
Sbjct  1300  TMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFDF  1359

Query  1351  LDESNGQAWARGGAGDRLLMYAQLKEWAEKNFDIKKWYPEGSLPAFYSDREGMKGWNLFQ  1410
             ++  +G+AW+ GGAG+RL+M+AQLKEWAE +FDI+ WY +  LP+FY +  G+KGWNLF+
Sbjct  1360  VNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYND-KLPGFYIEESGIKGWNLFK  1418

Query  1411  LMHRKARGDDVGKTKFGERNYCAESNGNAADTLMLCASWVAQTDLSEFFKKWNPGANAYQ  1470
             LMHR  R ++ ++ +    N C  S    +D LMLCAS  AQTDLSEFFK WNPG++A+ 
Sbjct  1419  LMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKAFL  1478

Query  1471  LPGASEMSFEGGVSQSAYNTLASLKLPKPEQGPETINKVTEH  1512
              P+ ++  +EGG++ S+ + + SLKL  P++ P +IN VT+H
Sbjct  1479  YPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQH  1520

49) yghJ in NC_012892


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1154 bits (4377),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 710/1482 (48%), Positives = 1056/1482 (72%), Gaps = 82/1482 (5%)

Query  92    LTLGGSQRVTGAT-CNGETSDGFTFTPGEDVTCVAGNTTIATFNTQSEAARSLRAVEKVS  150
             +TL+G+ +  ++  CN++ +  F ++  ++V C     +IATF +  +A ++ R  +   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  151   FSLEDAQELAASDNKKSNAVSLVTSSNSCPADTEQVCLTFSSVIESKRFDSLYKQ-IDLA  209
             +SL  A+E   S  ++ N   L+ +  +  +D  ++ L F S +++  F++  ++ +DL+
Sbjct  120   LSLISADEYRDSPVRQENLQILMKNMATIHGD--KISLVFRSTLDALTFENYLRHNLDLP  177

Query  210   PEEFKKLVNEEVENNAATDKApsthtspvvpvttpgtkpDLNASFVSANAEQFYQYQPSE  269
              ++F   + E + N+   DK PSTH + + P  TPGT ++LN++FVSANAE+   Y P++
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTD  237

Query  270   IILSEGRLVDSQGYGVAGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTFE  321
             +I S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ ISF+IDTFE
Sbjct  238   VIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFE  297

Query  322   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVINE  381
             LGS R+NK+ + ++ELG +  G N + LIHRY++ ++++  ++PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKL-IIPDKVTQIFSLYPNVINE  356

Query  382   IINLSLSNGAT-LDEGEQVVNL-PNEFIEQFKTGQSKEIDTAICA----KTDGCNEARWF  435
             +I+LSL+NG   LD G+   ++ P EF+ QF +G +  ID +I +    K ++    +  
Sbjct  357   VISLSLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKK--  414

Query  436   SLTTRNVNDGQIQGVINKLWGVDTSY-----KSVSKFHVFHDSTNFYGSTGNARGQAVVN  490
               ++ + + +QIQ++INKLWG   +      K V +FH+FHDSTNFYGSTG+AR+QA VN
Sbjct  415   -KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVN  473

Query  491   ISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSLVEPENVTRDTATFNLPFIS  550
             I+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFIS
Sbjct  474   IANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFIS  533

Query  551   LGQVGEGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLSGDSDDMKHFMQNVLRYLS  610
             LG++G GKLMV+GN++YNS+L CPNG+SW G V K+G C+LS+D DDM +F  NV+RYL 
Sbjct  534   LGEIGKGKLMVLGNARYNSVLVCPNGFSWGGTV-KNGTCSLSSDRDDMANFFSNVIRYL-  591

Query  611   DDKWTPDAKASMTVGTNLDTVYFKRHGQVTGNSAEFGFHPDFAGISVEHLSSYGDLDPQE  670
                 T  +   + VGTN+  VYFK  GQ  G+ A+F +++ F+    ++L+S+ DLD + 
Sbjct  592   ----TGSTSNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSK-QTQQLTSFHDLDVNT  646

Query  671   MPLLILNGFEYVTQVGGDPYAVPLRADTSKPKLSQQDVTDLIAYLNKGGSVLIMENVMSN  730
             +PL+I+N+++Y  +    PY +PL AD + PKLS+ DVTDLI Y+N+GGSVL+ME +++ 
Sbjct  647   IPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIINT  706

Query  731   LKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPNRERQRRADGIWVYERYPVVEG  787
                 + S + RLLD+AG++ ++ +SVV ++   + G P+R R +R +GIWV ERY+ VE+
Sbjct  707   ----NNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVED  762

Query  788   ------ALPYTINSETGEVTWKYQIDNKPDKKPKLEVASWQEEVDGEQ-VTQYAFIDEAD  840
                   +LPY INS+ G + WKY ++N+PD KPKLEVASW E   G++ +T+YAFIDE++
Sbjct  763   ESSGQQTLPYVINSD-GSIEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDESQ  821

Query  841   -----------YKT---PEL----LAAAKKRILDAF------PGLEECKDSDYHYEVNCL  876
                        Y+    PE+    L+ AK+++LDAF       +  ECK+S++HYE+NCL
Sbjct  822   HWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINCL  881

Query  877   EYRPGTGVPVTGGMYVPQYTQLSLNADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKGE  936
             EYRPG ++P+TGG+YVP+YT++ L    A+AMV+AA+LGTNI+ LYQHE YFRT+G+ G 
Sbjct  882   EYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSGA  941

Query  937   RLSSVDLERLYQNMSVWLWNKIEYRYENDKDDELGFKTFTEFLNCYANNAYSEGTQCSAD  996
             RL+SVDL+R+YQNMSVWLWN ++YRY++ + DELGFK FT++LNCY++N  +  T C+ +
Sbjct  942   RLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPEE  1001

Query  997   LKKSLVDNNMIYGDGSSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPGA  1055
             LK  L +  MIY++ S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IKVDV KYPG 
Sbjct  1002  LKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPGE  1061

Query  1056  VSAEGEKVTESISLYSNPTKWFAGNMQSTGLWAPAQKEVTIEst-asvpvtvtvaLADDL  1114
             V++ +     ++ + +N + WFAGN Q+TG WA A++  ++  +  + PVT+T+ALADDL
Sbjct  1062  VTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADDL  1121

Query  1115  TGREKHEVALNRPPKVTKTYDLKAND--KVTFKVPYGGLIYIKGNSPKNESAEFTFTGVV  1172
             TGREKHE++L+RPP+++K++ + ++     TF VPYGGLIY +G   +++   +TF+G +
Sbjct  1122  TGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGG--NSQQVKLTFSGTI  1179

Query  1173  KAPFYKDGEWKNALNSPAPLGELESDAFVYTTPKKNLEASNFTGGVAEFANDLDTFASSM  1232
              AP+Y DG W+N+L S AP+GE+ SD+F++T+PK NL+A  + GG+ +FA+DLD F++ +
Sbjct  1180  DAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADL  1239

Query  1233  NDFYGRD--GESGKHRMFTYKALTGHKHRFANDVQISIGDAHSGYPVMNSSFstnsttlp  1290
             NDFY+RD  ++++K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +L 
Sbjct  1240  NDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLN  1299

Query  1291  ttplnDWLIWHEVGHNAAETPLNVPGATEVANNVLALYMQDRYLGKMNRVADDITVAPEY  1350
             T PLN WL+WHEVGHN+AE+P+NV GATEV NN+LALYMQDR  GKM+RV +DI  A ++
Sbjct  1300  TMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFDF  1359

Query  1351  LDESNGQAWARGGAGDRLLMYAQLKEWAEKNFDIKKWYPEGSLPAFYSDREGMKGWNLFQ  1410
             ++  +G+AW+ GGAG+RL+M+AQLKEWAE +FDI+ WY +  LP+FY +  G+KGWNLF+
Sbjct  1360  VNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYND-KLPGFYIEESGIKGWNLFK  1418

Query  1411  LMHRKARGDDVGKTKFGERNYCAESNGNAADTLMLCASWVAQTDLSEFFKKWNPGANAYQ  1470
             LMHR  R ++ ++ +    N C  S    +D LMLCAS  AQTDLSEFFK WNPG++A+ 
Sbjct  1419  LMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKAFL  1478

Query  1471  LPGASEMSFEGGVSQSAYNTLASLKLPKPEQGPETINKVTEH  1512
              P+ ++  +EGG++ S+ + + SLKL  P++ P +IN VT+H
Sbjct  1479  YPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQH  1520

50) yghJ in NC_012967


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1154 bits (4377),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 710/1482 (48%), Positives = 1056/1482 (72%), Gaps = 82/1482 (5%)

Query  92    LTLGGSQRVTGAT-CNGETSDGFTFTPGEDVTCVAGNTTIATFNTQSEAARSLRAVEKVS  150
             +TL+G+ +  ++  CN++ +  F ++  ++V C     +IATF +  +A ++ R  +   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  151   FSLEDAQELAASDNKKSNAVSLVTSSNSCPADTEQVCLTFSSVIESKRFDSLYKQ-IDLA  209
             +SL  A+E   S  ++ N   L+ +  +  +D  ++ L F S +++  F++  ++ +DL+
Sbjct  120   LSLISADEYRDSPVRQENLQILMKNMATIHGD--KISLVFRSTLDALTFENYLRHNLDLP  177

Query  210   PEEFKKLVNEEVENNAATDKApsthtspvvpvttpgtkpDLNASFVSANAEQFYQYQPSE  269
              ++F   + E + N+   DK PSTH + + P  TPGT ++LN++FVSANAE+   Y P++
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTD  237

Query  270   IILSEGRLVDSQGYGVAGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTFE  321
             +I S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ ISF+IDTFE
Sbjct  238   VIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFE  297

Query  322   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVINE  381
             LGS R+NK+ + ++ELG +  G N + LIHRY++ ++++  ++PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKL-IIPDKVTQIFSLYPNVINE  356

Query  382   IINLSLSNGAT-LDEGEQVVNL-PNEFIEQFKTGQSKEIDTAICA----KTDGCNEARWF  435
             +I+LSL+NG   LD G+   ++ P EF+ QF +G +  ID +I +    K ++    +  
Sbjct  357   VISLSLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKK--  414

Query  436   SLTTRNVNDGQIQGVINKLWGVDTSY-----KSVSKFHVFHDSTNFYGSTGNARGQAVVN  490
               ++ + + +QIQ++INKLWG   +      K V +FH+FHDSTNFYGSTG+AR+QA VN
Sbjct  415   -KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVN  473

Query  491   ISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSLVEPENVTRDTATFNLPFIS  550
             I+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFIS
Sbjct  474   IANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFIS  533

Query  551   LGQVGEGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLSGDSDDMKHFMQNVLRYLS  610
             LG++G GKLMV+GN++YNS+L CPNG+SW G V K+G C+LS+D DDM +F  NV+RYL 
Sbjct  534   LGEIGKGKLMVLGNARYNSVLVCPNGFSWGGTV-KNGTCSLSSDRDDMANFFSNVIRYL-  591

Query  611   DDKWTPDAKASMTVGTNLDTVYFKRHGQVTGNSAEFGFHPDFAGISVEHLSSYGDLDPQE  670
                 T  +   + VGTN+  VYFK  GQ  G+ A+F +++ F+    ++L+S+ DLD + 
Sbjct  592   ----TGSTSNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSK-QTQQLTSFHDLDVNT  646

Query  671   MPLLILNGFEYVTQVGGDPYAVPLRADTSKPKLSQQDVTDLIAYLNKGGSVLIMENVMSN  730
             +PL+I+N+++Y  +    PY +PL AD + PKLS+ DVTDLI Y+N+GGSVL+ME +++ 
Sbjct  647   IPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIINT  706

Query  731   LKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPNRERQRRADGIWVYERYPVVEG  787
                 + S + RLLD+AG++ ++ +SVV ++   + G P+R R +R +GIWV ERY+ VE+
Sbjct  707   ----NNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVED  762

Query  788   ------ALPYTINSETGEVTWKYQIDNKPDKKPKLEVASWQEEVDGEQ-VTQYAFIDEAD  840
                   +LPY INS+ G + WKY ++N+PD KPKLEVASW E   G++ +T+YAFIDE++
Sbjct  763   ESSGQQTLPYVINSD-GSIEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDESQ  821

Query  841   -----------YKT---PEL----LAAAKKRILDAF------PGLEECKDSDYHYEVNCL  876
                        Y+    PE+    L+ AK+++LDAF       +  ECK+S++HYE+NCL
Sbjct  822   HWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINCL  881

Query  877   EYRPGTGVPVTGGMYVPQYTQLSLNADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKGE  936
             EYRPG ++P+TGG+YVP+YT++ L    A+AMV+AA+LGTNI+ LYQHE YFRT+G+ G 
Sbjct  882   EYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSGA  941

Query  937   RLSSVDLERLYQNMSVWLWNKIEYRYENDKDDELGFKTFTEFLNCYANNAYSEGTQCSAD  996
             RL+SVDL+R+YQNMSVWLWN ++YRY++ + DELGFK FT++LNCY++N  +  T C+ +
Sbjct  942   RLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPEE  1001

Query  997   LKKSLVDNNMIYGDGSSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPGA  1055
             LK  L +  MIY++ S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IKVDV KYPG 
Sbjct  1002  LKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPGE  1061

Query  1056  VSAEGEKVTESISLYSNPTKWFAGNMQSTGLWAPAQKEVTIEst-asvpvtvtvaLADDL  1114
             V++ +     ++ + +N + WFAGN Q+TG WA A++  ++  +  + PVT+T+ALADDL
Sbjct  1062  VTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADDL  1121

Query  1115  TGREKHEVALNRPPKVTKTYDLKAND--KVTFKVPYGGLIYIKGNSPKNESAEFTFTGVV  1172
             TGREKHE++L+RPP+++K++ + ++     TF VPYGGLIY +G   +++   +TF+G +
Sbjct  1122  TGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGG--NSQQVKLTFSGTI  1179

Query  1173  KAPFYKDGEWKNALNSPAPLGELESDAFVYTTPKKNLEASNFTGGVAEFANDLDTFASSM  1232
              AP+Y DG W+N+L S AP+GE+ SD+F++T+PK NL+A  + GG+ +FA+DLD F++ +
Sbjct  1180  DAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADL  1239

Query  1233  NDFYGRD--GESGKHRMFTYKALTGHKHRFANDVQISIGDAHSGYPVMNSSFstnsttlp  1290
             NDFY+RD  ++++K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +L 
Sbjct  1240  NDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLN  1299

Query  1291  ttplnDWLIWHEVGHNAAETPLNVPGATEVANNVLALYMQDRYLGKMNRVADDITVAPEY  1350
             T PLN WL+WHEVGHN+AE+P+NV GATEV NN+LALYMQDR  GKM+RV +DI  A ++
Sbjct  1300  TMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFDF  1359

Query  1351  LDESNGQAWARGGAGDRLLMYAQLKEWAEKNFDIKKWYPEGSLPAFYSDREGMKGWNLFQ  1410
             ++  +G+AW+ GGAG+RL+M+AQLKEWAE +FDI+ WY +  LP+FY +  G+KGWNLF+
Sbjct  1360  VNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYND-KLPGFYIEESGIKGWNLFK  1418

Query  1411  LMHRKARGDDVGKTKFGERNYCAESNGNAADTLMLCASWVAQTDLSEFFKKWNPGANAYQ  1470
             LMHR  R ++ ++ +    N C  S    +D LMLCAS  AQTDLSEFFK WNPG++A+ 
Sbjct  1419  LMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKAFL  1478

Query  1471  LPGASEMSFEGGVSQSAYNTLASLKLPKPEQGPETINKVTEH  1512
              P+ ++  +EGG++ S+ + + SLKL  P++ P +IN VT+H
Sbjct  1479  YPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQH  1520

51) EcHS_A3142 in NC_009800


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1152 bits (4370),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 713/1482 (49%), Positives = 1048/1482 (71%), Gaps = 85/1482 (5%)

Query  79    LTLGGSQRVTGAT-CNGESSDGFTFKPGEDVTCVAGNTTIATFNTQSEAARSLRAVEKVS  137
             +TL+G+ +  ++  CN++ +  F +   ++V C     +IATF +  +A ++ R  +   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  138   FSLEDAQELAGSDDKKSNAVSLVTSSNSCPANTEQVCLTFSSVIESKRFDSLYKQ-IDLA  196
             +SL  A+E  +S  ++ N   L+ +  +   + +++ L F S +++  F++  ++ +DL+
Sbjct  120   LSLISADEYRDSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDLP  177

Query  197   PEEFKKLVNEEVENNAATDKApsthtspvvpvttpgtkpDLNASFVSANAEQFYQYQPTE  256
              ++F   + E + N+   DK PSTH + + P  TPGT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTD  237

Query  257   IILSEGRLVDSQGYGVAGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTFE  308
             +I S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ ISF+IDTFE
Sbjct  238   VIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFE  297

Query  309   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVINE  368
             LGS R+NK+ + ++ELG +  G N + LIHRY++ ++++  ++PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKL-IIPDKVTQIFSLYPNVINE  356

Query  369   IINLSLSNGAT---LGEGEQVVNLPNEFIEQFNTGQAKEIDTAICA----KTDGCNEARW  421
             +I+LSL+NG     +G+G   + +P EF+ QF++G A  ID +I +    K ++    + 
Sbjct  357   VISLSLPNGDIELDIGDGKTQI-VPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKK-  414

Query  422   FSLTTRNVNDGQIQGVINKLWGVDTNY-----KSVSKFHVFHDSTNFYGSTGNARGQAVV  476
                ++ + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA V
Sbjct  415   --KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAV  472

Query  477   NISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVRPENVTRETATFNLPFI  536
             NI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ +T+TFNLPFI
Sbjct  473   NIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFI  532

Query  537   SLGQVGDGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENVLRYL  596
             SLG++G GKLMV+GN++YNS+L CPNG+SW G V K+G C+L+SD DDM NF  NV+RYL
Sbjct  533   SLGEIGKGKLMVLGNARYNSVLVCPNGFSWGGTV-KNGTCSLSSDRDDMANFFSNVIRYL  591

Query  597   SNDRWLPDAKSNMTVGTNLDTVYFKKHGQVTGNSAAFGFHPDFAGISVEHLSSYGDLDPQ  656
             +       + +++ VGTN+  VYFK  GQ  G+ A F +++ F+    ++L+S+ DLD +
Sbjct  592   TGS-----TSNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSK-QTQQLTSFHDLDVN  645

Query  657   EMPLLILNGFEYVTQVGNDPYAIPLRADTSKPKLTQQDVTDLIAYMNKGGSVLIMENVMS  716
              +PL+I+N+++Y  +  N PY IPL AD + PKL++ DVTDLI Y+N+GGSVL+ME +++
Sbjct  646   TIPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIIN  705

Query  717   NLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQRRSTPIWVYERYPAVD  773
                  + S + RLLD+AG++ ++ +SVV ++   + G PDR R +R   IWV ERY+AV+
Sbjct  706   T----NNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVE  761

Query  774   GKP------PYTIDDTTKEVIWKYQQENKPDDKPKLEVASW-QEEVEGKQVTQFAFIDEA  826
             + +      PY I+     + WKY  EN+PDDKPKLEVASW + E  +K +T++AFIDE+
Sbjct  762   DESSGQQTLPYVINSDGS-IEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDES  820

Query  827   DH--------------KTPE----SLAAAKKRILDAF------PGLEECKDSDYHYEVNC  862
             +H                PE    SL+ AK+++LDAF       +  ECK+S++HYE+NC
Sbjct  821   QHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINC  880

Query  863   LEYRPGTGVPVTGGMYVPQYTQLSLNADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKG  922
             LEYRPG ++P+TGG+YVP+YT++ L    A+AMV+AA+LGTNI+ LYQHE YFRT+G+ G
Sbjct  881   LEYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSG  940

Query  923   ERLSSVDLERLYQNMSVWLWNKIEYRYENDKDDELGFKTFTEFLNCYANNAYDGGTQCSA  982
              RL+SVDL+R+YQNMSVWLWN ++YRY++ + DELGFK FT++LNCY++N  +G T C+ 
Sbjct  941   ARLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPE  1000

Query  983   ELKQSLIDNKMIYGE--GSKAGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPG  1040
             ELK+ L +  MIY+E  GS AG M+PSYPLNYMEKPLTRLMLGRS WDL+IKVDV KYPG
Sbjct  1001  ELKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPG  1060

Query  1041  AVSAEGEEVTETINLYSNPTKWFAGNMQSTGLWAPAQQEVSIK-SNAKVPVTVTVALADD  1099
              V++ +     T+++ +N + WFAGN Q+TG WA A+Q  S+  S    PVT+T+ALADD
Sbjct  1061  EVTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADD  1120

Query  1100  LTGREKHEVALNRPPRVTKTYSL--DASGTVKFKVPYGGLIYIKSDSKEEKSANFTFTGV  1157
             LTGREKHE++L+RPPR++K++ +  D++    F VPYGGLIY ++++ ++   ++TF+G 
Sbjct  1121  LTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNSQQ--VKLTFSGT  1178

Query  1158  VKAPFYKDGKWKNDLKSPAPLGELESASFVYTTPKKNLEASNYKGGLKQFAEDLDTFASS  1217
             + AP+Y DGKW+N L S AP+GE+ S +F++T+PK NL+A  Y GG+ QFA DLD F++ 
Sbjct  1179  IDAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSAD  1238

Query  1218  MNDFYGRD--GESGKHRMFTYEALTGHKHRFTNDVQISIGDAHSGYPVMnssfspnsttl  1275
             +NDFY+RD  ++++K+R  T  ++  ++H+F NDV IS+G AHSGYPVMN SF  +S +L
Sbjct  1239  LNDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSL  1298

Query  1276  pttplnDWLIWHEVGHNAAETPLTVPGATEVANNVLALYMQDRYLGKMNRVADDITVAPE  1335
              T PLN WL+WHEVGHN+AE+P+ V GATEV NN+LALYMQDR  GKM+RV +DI  A +
Sbjct  1299  NTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFD  1358

Query  1336  YLEESNGQAWARGGAGDRLLMYAQLKEWAEKNFDIKQWYPEGSLPAFYSEREGMKGWNLF  1395
             +++  +G+AW+ GGAG+RL+M+AQLKEWAE +FDI++WY +  LP+FY E  G+KGWNLF
Sbjct  1359  FVNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYND-KLPGFYIEESGIKGWNLF  1417

Query  1396  QLMHRKARGDDVGNDKFGNRNYCAESNGNAADTLMLCASWVAQTDLSAFFKKWNPGANAY  1455
             +LMHR  R ++ ++ +    N C  S    +D LMLCAS  AQTDLS FFK WNPG++A+
Sbjct  1418  KLMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKAF  1477

Query  1456  QLPGATEMSFEGGVSQSAYNTLASLDLPKPKQGPETINKVTE  1497
               P+  +  +EGG++ S+ + + SL L  P++ P +IN VT+
Sbjct  1478  LYPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQ  1519

52) yghJ in NC_011741


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1151 bits (4364),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 722/1484 (49%), Positives = 1044/1484 (71%), Gaps = 86/1484 (5%)

Query  98    LTLGGSLRVTGDITCNDESSDGFTFTPGDKVTCVAGNNTTIATFDTQSEAARSLRAVEKV  157
             +TL+G+L+  + + CND+ +  F ++  D+V C   N  +IATF +  +A ++ R  +  
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTI-NGRSIATFTAPFDANKNGRNTDSE  118

Query  158   SFSLEDAQELAGSDNKKSNALSLVTSMNSCPANTEQVCLEFSSVIESKRFDSLYKQ-IDL  216
              +SL  A+E  +S  ++ N   L+ +M +   + +++ L F S +++  F++  ++ +DL
Sbjct  119   VLSLISADEYRDSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDL  176

Query  217   APEEFKKLVNEEVENNAATDKAPSTHTSPVVPATTPGTKPDLNASFVSANAEQFYQYQPS  276
             + ++F   + E + N+   DK PSTH + + P+ TPGT ++LN++FVSANAE+   Y P+
Sbjct  177   PKDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPT  236

Query  277   EIILSEGRLVDSQGDGVVGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTF  328
             ++I S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ ISF+IDTF
Sbjct  237   DVIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTF  296

Query  329   ELGSVRGNKSTIALTELGDEVRGANIDQLIHRYSKAGQNHTRVVPDEVRKVFAEYPNVIN  388
             ELGS R+NK+ + ++ELG +  G N + LIHRY+  +++   ++PD V ++F+ YPNVIN
Sbjct  297   ELGSTRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKL-IIPDKVTQIFSLYPNVIN  355

Query  389   EIINLSLSNGAT---LGEGEQVVNLPNEFIEQFKTGQAKEIDTAICA----KNDGCNEAR  441
             E+I+LSL+NG     +G+G   + +P EF+ QF +G A  ID +I +    K ++    +
Sbjct  356   EVISLSLPNGDIELDIGDGKTQI-VPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKK  414

Query  442   WFSLTTRNVNDGQIQGVINKLWGVDTNY-----KSVSKFHVFHDSTNFYGSTGNARGQAV  496
                 ++ + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA 
Sbjct  415   ---KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAA  471

Query  497   VNISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSLVEPENVTRDTATFNLPF  556
             VNI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPF
Sbjct  472   VNIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPF  531

Query  557   ISLGQVGDGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENVLRY  616
             ISLG++G GKLMV+GN++YNS+L CPNG+SW G V K+G C+L+SD DDM NF  NV+RY
Sbjct  532   ISLGEIGKGKLMVLGNARYNSVLVCPNGFSWGGTV-KNGTCSLSSDRDDMANFFSNVIRY  590

Query  617   LSNDRWLPDAKSSMTVGTNLETVYFKKHGQVLGNSAPFAFHKDFTGITVKPMTSYGNLNP  676
             L+       + + + VGTN+  VYFK  GQ +G+ A F ++  F+  T + +TS+ +L+ 
Sbjct  591   LTGS-----TSNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSKQT-QQLTSFHDLDV  644

Query  677   DEVPLLILNGFEYVTQWGSDPYSIPLRADTSKPKLTQQDVTDLIAYMNKGGSVLIMENVM  736
             + +PL+I+N+++Y  +  + PY IPL AD + PKL++ DVTDLI Y+N+GGSVL+ME ++
Sbjct  645   NTIPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETII  704

Query  737   SNLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQRRSTPIWVYERYPAV  793
             +     + S + RLLD+AG++ ++ +SVV ++   + G PDR R +R   IWV ERY+AV
Sbjct  705   NT----NNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAV  760

Query  794   DGKP------PYTIDDTTKEVIWKYQQENKPDDKPKLEVASW-QEEVEGKQVTQFAFIDE  846
             ++ +      PY I+     + WKY  EN+PDDKPKLEVASW + E  +K +T++AFIDE
Sbjct  761   EDESSGQQTLPYVINSDGS-IEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDE  819

Query  847   ADH--------------KTPE----SLAAAKQRILDAF------PGLEVCKDSDYHYEVN  882
             ++H                PE    SL+ AK+++LDAF       +   CK+S++HYE+N
Sbjct  820   SQHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEIN  879

Query  883   CLEYRPGTDVPVTGGMYVPQYTQLDLSADTAKAMLQAADLGTNIQRLYQHELYFRTNGRQ  942
             CLEYRPG  +P+TGG+YVP+YT++ L+   A+AM++AA+LGTNI+ LYQHE YFRT+G+ 
Sbjct  880   CLEYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKS  939

Query  943   GERLNSVDLERLYQNMSVWLWNETKYRYEEGKEDELGFKTFTEFLNCYTNNAYVG-TQCS  1001
             G RLNSVDL+R+YQNMSVWLWN+  YRY++ + DELGFK FT++LNCYT+N   G T C+
Sbjct  940   GARLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCP  999

Query  1002  AELKKSLIDNKMIYGEESSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYP  1060
              ELK  L +  MIY+E S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IKVDV KYP
Sbjct  1000  EELKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYP  1059

Query  1061  GVVNTNGETVTQNINLYSAPTKWFAGNMQSTGLWAPAQQEVSIE-SKatvpvtvtvalaD  1119
             G V T +      +++ +  + WFAGN Q+TG WA A+Q  S+  S  T PVT+T+ALAD
Sbjct  1060  GEVTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALAD  1119

Query  1120  DLTGREKHEVSLNRPPRVTKTYDLKAND--KVTFKVPYGGLIYIKGDSKEVQSADFTFTG  1177
             DLTGREKHE++L+RPPR++K++ + ++     TF VPYGGLIY +G++   Q   +TF+G
Sbjct  1120  DLTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNS--QQVKLTFSG  1177

Query  1178  VVKAPFYKDGKWQHDLNSPAPLGELESASFVYTTPKKNLNASNYTGGLEQFANDLDTFAS  1237
              + AP+Y DGKW++ L S AP+GE+ S +F++T+PK NLNA  Y GG+EQFA+DLD F++
Sbjct  1178  TIDAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSA  1237

Query  1238  SMNDFYGRD--SEDGKHRMFTYKNLPGHKHRFANDVQISIGDAHSGYPVMnssfspnstt  1295
              +NDFY+RD  ++++K+R  T K++P ++H+F NDV IS+G AHSGYPVMN SF  +S +
Sbjct  1238  DLNDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRS  1297

Query  1296  lpttplnDWLIWHEVGHNAAETPLTVPGATEVANNVLALYMQDRYLGKMNRVADDITVAP  1355
             L T PLN WL+WHEVGHN+AE+P+ V GATEV NN+LALYMQDR  GKM+RV +DI  A 
Sbjct  1298  LNTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAF  1357

Query  1356  EYLEESNGQAWARGGAGDRLLMYAQLKEWAEKNFDIKKWYPDGTPLPEFYSEREGMKGWN  1415
             ++++  +G+AW+ GGAG+RL+M+AQLKEWAE +FDI+ WY D   LP FY E  G+KGWN
Sbjct  1358  DFVNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYND--KLPGFYIEESGIKGWN  1415

Query  1416  LFQLMHRKACGDEVSNDKFGGKNYCAESNGNAADTLMLCASWVAQTDLSEFFKKWNPGAN  1475
             LF+LMHR    ++  + +  G N C  S    +D LMLCAS  AQTDLSEFFK WNPG++
Sbjct  1416  LFKLMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSK  1475

Query  1476  AYQLPGATEMSFEGGVSQSAYNTLASLNLPKPKQGPETINKVTE  1519
             A+  P+  +  +EGG++ S+ + + SL+L  P++ P +IN VT+
Sbjct  1476  AFLYPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQ  1519

53) ETEC_3241 in NC_017633


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1148 bits (4354),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 717/1484 (49%), Positives = 1044/1484 (71%), Gaps = 86/1484 (5%)

Query  94    LTLGGSQRVTGAT-CNGESSDGFTFKPGEDVTCVAGNTTIATFNTQSEAARSLRAVEKVS  152
             +TL+G+ +  ++  CN++ +  F +   ++V C     +IATF +  +A ++ R  +   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  153   FSLEDAQELAGSDDKKSNAVSLVTSSNSCPANTEQVCLTFSSVIESKRFDSLYKQ-IDLA  211
             +SL  A+E  +S  ++ N   L+ +  +   + +++ L F S +++  F++  ++ +DL+
Sbjct  120   LSLISADEYRDSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDLP  177

Query  212   PEEFKKLVNEEVENNAATDKApsthtspvvpvttpgtkpDLNASFVSANAEQFYQYQPTE  271
              ++F   + E + N+   DK PSTH + + P  TPGT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTD  237

Query  272   IILSEGRLVDSQGYGVAGVNYYTNSGRGVTG--------ENGEFSFSWGEAISFGIDTFE  323
             +I S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ ISF+IDTFE
Sbjct  238   VIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFE  297

Query  324   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVINE  383
             LGS R+NK+ + ++ELG +  G N + LIHRY++ ++++  ++PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKL-IIPDKVTQIFSLYPNVINE  356

Query  384   IINLSLSNGAT---LGEGEQVVNLPNEFIEQFNTGQAKEIDTAICA----KTDGCNEARW  436
             +I+LSL+NG     +G+G   + +P EF+ QF++G A  ID +I +    K ++    + 
Sbjct  357   VISLSLPNGDIELDIGDGKTQI-VPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKK-  414

Query  437   FSLTTRNVNDGQIQGVINKLWGVDTNY-----KSVSKFHVFHDSTNFYGSTGNARGQAVV  491
                ++ + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA V
Sbjct  415   --KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAV  472

Query  492   NISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVRPENVTRETASFNLPFI  551
             NI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ +T++FNLPFI
Sbjct  473   NIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFI  532

Query  552   SLGQVGDGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENVLRYL  611
             SLG++G GKLMV+GN++YNS+L CPNG+SW G V K+G C+L+SD DDM NF  NV+RYL
Sbjct  533   SLGEIGKGKLMVLGNARYNSVLVCPNGFSWGGTV-KNGTCSLSSDRDDMANFFSNVIRYL  591

Query  612   SNDRWLPDAKSSMTVGTNLETVYFKKHGQVLGNSAPFAFHKDFTGITVKPMTSYGNLNPD  671
             +       + + + VGTN+  VYFK  GQ +G+ A F ++  F+  T + +TS+ +L+ +
Sbjct  592   TGS-----TSNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSKQT-QQLTSFHDLDVN  645

Query  672   EVPLLILNGFEYVTQWGSDPYSIPLRADTSKPKLTQQDVTDLIAYMNKGGSVLIMENVMS  731
              +PL+I+N+++Y  +  + PY IPL AD + PKL++ DVTDLI Y+N+GGSVL+ME +++
Sbjct  646   TIPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIIN  705

Query  732   NLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQRRSTPIWVYERYPAVD  788
                  + S + RLLD+AG++ ++ +SVV ++   + G PDR R +R   IWV ERY+AV+
Sbjct  706   T----NNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVE  761

Query  789   GKP------PYTIDDTTKEVIWKYQQENKPDDKPKLEVASW-QEEVEGKQVTQFAFIDEA  841
             + +      PY I+     + WKY  EN+PDDKPKLEVASW + E  +K +T++AFIDE+
Sbjct  762   DESSGQQTLPYVINSDGS-IEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDES  820

Query  842   DH--------------KTPE----SLAAAKQRILDAF------PGLEVCKDSDYHYEVNC  877
             +H                PE    SL+ AK+++LDAF       +   CK+S++HYE+NC
Sbjct  821   QHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINC  880

Query  878   LEYRPGTDVPVTGGMYVPQYTQLDLSADTAKAMLQAADLGTNIQRLYQHELYFRTNGRQG  937
             LEYRPG  +P+TGG+YVP+YT++ L+   A+AM++AA+LGTNI+ LYQHE YFRT+G+ G
Sbjct  881   LEYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSG  940

Query  938   ERLNSVDLERLYQNMSVWLWNETKYRYEEGKEDELGFKTFTEFLNCYTNNAYVG-TQCSA  996
              RLNSVDL+R+YQNMSVWLWN+  YRY++ + DELGFK FT++LNCYT+N   G T C+ 
Sbjct  941   ARLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPE  1000

Query  997   ELKKSLIDNKMIYGEESSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPG  1055
             ELK  L +  MIY+E S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IKVDV KYPG
Sbjct  1001  ELKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPG  1060

Query  1056  VVNTNGETVTQNINLYSAPTKWFAGNMQSTGLWAPAQQEVSIESKS-TVPVTVTVALADD  1114
              V T +      +++ +  + WFAGN Q+TG WA A+Q  S+   + T PVT+T+ALADD
Sbjct  1061  EVTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADD  1120

Query  1115  LTGREKHEVSLNRPPRVTKTYDLKAND--KVTFKVPYGGLIYIKGDSKEVQSADFTFTGV  1172
             LTGREKHE++L+RPPR++K++ + ++     TF VPYGGLIY +G++   Q   +TF+G 
Sbjct  1121  LTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNS--QQVKLTFSGT  1178

Query  1173  VKAPFYKDGKWQHDLNSPAPLGELESASFVYTTPKKNLNASNYTGGLEQFANDLDTFASS  1232
             + AP+Y DGKW++ L S AP+GE+ S +F++T+PK NLNA  Y GG+EQFA+DLD F++ 
Sbjct  1179  IDAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSAD  1238

Query  1233  MNDFYGRD--SEDGKHRMFTYKNLPGHKHRFANDVQISIGDAHSGYPVMnssfspnsttl  1290
             +NDFY+RD  ++++K+R  T K++P ++H+F NDV IS+G AHSGYPVMN SF  +S +L
Sbjct  1239  LNDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSL  1298

Query  1291  pttplnDWLIWHEVGHNAAETPLTVPGATEVANNVLALYMQDRYLGKMNRVADDITVAPE  1350
              T PLN WL+WHEVGHN+AE+P+ V GATEV NN+LALYMQDR  GKM+RV +DI  A +
Sbjct  1299  NTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFD  1358

Query  1351  YLEESNGQAWARGGAGDRLLMYAQLKEWAEKNFDIKKWYPDGTPLPEFYSEREGMKGWNL  1410
             +++  +G+AW+ GGAG+RL+M+AQLKEWAE +FDI+ WY D   LP FY E  G+KGWNL
Sbjct  1359  FVNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYND--KLPGFYIEESGIKGWNL  1416

Query  1411  FQLMHRKARGDEVSNDKFGGKNYCAESNGNAADTLMLCASWVAQTDLSEFFKKWNPGANA  1470
             F+LMHR  R ++  + +  G N C  S    +D LMLCAS  AQTDLSEFFK WNPG++A
Sbjct  1417  FKLMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKA  1476

Query  1471  YQLPGASEMSFEGGVSQSAYNTLASLDLPKPEQGPETINQVTEH  1514
             +  P+ ++  +EGG++ S+ + + SL L  P++ P +IN VT+H
Sbjct  1477  FLYPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQH  1520

54) yghJ in NC_011750


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1146 bits (4345),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 713/1482 (49%), Positives = 1049/1482 (71%), Gaps = 81/1482 (5%)

Query  98    LTLGGSQRVTGAT-CNGESSDGFTFTPGEDVTCVAGNTTIATFDTQSEAARSLRAVEKVS  156
             +TL+G+ +  ++  CN++ +  F ++  ++V C     +IATF +  +A ++ R  +   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  157   FSLEDAQELAASDDKKSNAVSLVTSSNSCPANTEQVCLTFSSVIESKRFDSLYKQ-IDLA  215
             +SL  A+E   S  ++ N   L+ +  +   + +++ L F S +++  F++  ++ +DL+
Sbjct  120   LSLISADEYRDSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDLP  177

Query  216   PEEFKKLVNEEVENNAATDKApsthtspvvpvttpgtkpDLNASFVSANAEQFYQYQPTE  275
              ++F   + E + N+   DK PSTH + + P  TPGT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTD  237

Query  276   IILSEGRLVDSMGNGVVGVNYYTSSGRGVTG--------ENGKFNFSWGETISFGIDTFE  327
             +I S GRL+DS G  + GV+Y++++ RG+TG        ++G F+FSWG+ ISF+IDTFE
Sbjct  238   VIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFE  297

Query  328   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSQAGKNDEREVPDVVRKVFAEYPNVINE  387
             LGS R+NK+ + ++ELG +  G N + LIHRY+  + +    +PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTDFYISELGKDNEGKNAEALIHRYASID-DSKLIIPDKVTQIFSLYPNVINE  356

Query  388   IINLSLSNGE-ALSEGDQTFER-TNEFLEQFESGQAKEIDTAICD----SLGGCNSQRWF  441
             +I+LSL+NG+  L  GD   +    EF+ QF+SG A  ID +I       + +  +++  
Sbjct  357   VISLSLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKK--  414

Query  442   SLTARNVNEGQIQGVINKLWGV-----DKDYKSVTKFHVFHDSTNFYGSTGNARGQAVVN  496
               +A + + +QIQ++INKLWG       ++ K V +FH+FHDSTNFYGSTG+AR+QA VN
Sbjct  415   -KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVN  473

Query  497   ISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSLVEPENVTRDTATFNLPFIS  556
             I+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFIS
Sbjct  474   IANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFIS  533

Query  557   LGQVGEGKLMVIGNPHYNSILRCPNGYSWEGGVDKNGQCTRNSDSNDMKHFMQNVLRYLS  616
             LG++G GKLMV+GN++YNS+L CPNG+SW G V KNG C+ +SD +DM +F  NV+RYL 
Sbjct  534   LGEIGKGKLMVLGNARYNSVLVCPNGFSWGGTV-KNGTCSLSSDRDDMANFFSNVIRYL-  591

Query  617   DDKWTPDAKASMTVGTNLDTVYFKRHGQVTGNSAEFGFHPDFAGISVEHLSSYGDLDPQE  676
                 T  +   + VGTN+  VYFK  GQ  G+ A+F +++ F+    ++L+S+ DLD + 
Sbjct  592   ----TGSTSNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSK-QTQQLTSFHDLDVNT  646

Query  677   MPLLILNGFEYVTQVGNDPYAIPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMSN  736
             +PL+I+N+++Y  +  N PY IPL AD + PKL++ DVTDLI Y+N+GGSVL+ME +++ 
Sbjct  647   IPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIINT  706

Query  737   LKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPNRVRQQRATGIWVYERYPAVDG  793
                 + S + RLLD+AG++ ++ +SVV ++   + G P+R R QR  GIWV ERY+AV++
Sbjct  707   ----NNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVED  762

Query  794   ------ALPYTIDSKTGEVKWKYQVENKPDDKPKLEVASWLE-DVDGKQETRYAFIDEAD  846
                   +LPY I+S  G + WKY VEN+PDDKPKLEVASW+E + ++K  T+YAFIDE++
Sbjct  763   ESSGQQTLPYVINSD-GSIEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDESQ  821

Query  847   H---------------KTE---DSLKAAKAKIFEKF------PGLKECKDPTYHYEVNCL  882
             H               K E    SL  AK K+++ F       +  ECK++ +HYE+NCL
Sbjct  822   HWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINCL  881

Query  883   EYRPGTGVPVTGGMYVPQYTQLSLNADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKGE  942
             EYRPG ++P+TGG+YVP+YT++ L    A+AMV+AA+LGTNI+ LYQHE YFRT+G+ G 
Sbjct  882   EYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSGA  941

Query  943   RLSSVDLERLYQNMSVWLWNKIEYRYENDKDDELGFKTFTEFLNCYANDAYTGGTQCSDE  1002
             RL+SVDL+R+YQNMSVWLWN ++YRY++ + DELGFK FT++LNCY+++   G T C++E
Sbjct  942   RLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPEE  1001

Query  1003  LKKSLVDNNMIYGEKSVNKAGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPGA  1062
             LK  L +  MIY+EKS + AG M+PSYPLNYMEKPLTRLMLGRS WDL+IKVDV KYPG 
Sbjct  1002  LKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPGE  1061

Query  1063  VSAEGEKVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIEss-asvpvtvtvaLADDL  1121
             V++ +     T+ + +N + WFAGN Q+TG WA A++  ++  S  + PVT+T+ALADDL
Sbjct  1062  VTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADDL  1121

Query  1122  TGREKHEVALNRPPKVTKTYDLKAND--KVTFKVPYGGLIYIKGNSPKNESAEFTFTGVV  1179
             TGREKHE++L+RPP+++K++ + ++     TF VPYGGLIY +G   +++   +TF+G +
Sbjct  1122  TGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGG--NSQQVKLTFSGTI  1179

Query  1180  KAPFYKDGEWKNALNSPAPLGELESDAFVYTTPKKNLEASNFTGGVAEFAKDLDTFASSM  1239
              AP+Y DG W+N+L S AP+GE+ SD+F++T+PK NL+A  + GG+ +FAKDLD F++ +
Sbjct  1180  DAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADL  1239

Query  1240  NDFYGRND--EDGKHRMFTYKNLTGHKHRFTNDVQISIGDAHSGYPVMNSSFstnsttlp  1297
             NDFY+R++  +++K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +L 
Sbjct  1240  NDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLN  1299

Query  1298  ttplnDWLIWHEVGHNAAETPLTVPGATEVANNVLALYMQDRYLGKMNRVADDITVAPEY  1357
             T PLN WL+WHEVGHN+AE+P+ V GATEV NN+LALYMQDR  GKM+RV +DI  A ++
Sbjct  1300  TMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFDF  1359

Query  1358  LEESNGQAWARGGAGDRLLMYAQLKEWAEKNFDIKQWYPEGDLPKFYSDREGMKGWNLFQ  1417
             ++  +G+AW+ GGAG+RL+M+AQLKEWAE +FDI++WY +  LP FY +  G+KGWNLF+
Sbjct  1360  VNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYND-KLPGFYIEESGIKGWNLFK  1418

Query  1418  LMHRKARGDDVGKTKFGERNYCAESNGNAADKLMLCASWVAQTDLSEFFKKWNPGANAYQ  1477
             LMHR  R ++ ++ +    N C  S    +D LMLCAS  AQTDLSEFFK WNPG++A+ 
Sbjct  1419  LMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKAFL  1478

Query  1478  LPGASEMNFEGGVSQSAYETLAALNLPKPQQGPETINQVTEH  1519
              P+ ++  +EGG++ S+ + + +L+L  PQ+ P +IN VT+H
Sbjct  1479  YPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQH  1520

55) yghJ in NC_017646


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1146 bits (4345),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 713/1482 (49%), Positives = 1049/1482 (71%), Gaps = 81/1482 (5%)

Query  92    LTLGGSQRVTGAT-CNGESSDGFTFTPGEDVTCVAGNTTIATFDTQSEAARSLRAVEKVS  150
             +TL+G+ +  ++  CN++ +  F ++  ++V C     +IATF +  +A ++ R  +   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  151   FSLEDAQELAASDDKKSNAVSLVTSSNSCPANTEQVCLTFSSVIESKRFDSLYKQ-IDLA  209
             +SL  A+E   S  ++ N   L+ +  +   + +++ L F S +++  F++  ++ +DL+
Sbjct  120   LSLISADEYRDSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDLP  177

Query  210   PEEFKKLVNEEVENNAATDKApsthtspvvpvttpgtkpDLNASFVSANAEQFYQYQPTE  269
              ++F   + E + N+   DK PSTH + + P  TPGT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTD  237

Query  270   IILSEGRLVDSMGNGVVGVNYYTSSGRGVTG--------ENGKFNFSWGETISFGIDTFE  321
             +I S GRL+DS G  + GV+Y++++ RG+TG        ++G F+FSWG+ ISF+IDTFE
Sbjct  238   VIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFE  297

Query  322   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSQAGKNDEREVPDVVRKVFAEYPNVINE  381
             LGS R+NK+ + ++ELG +  G N + LIHRY+  + +    +PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTDFYISELGKDNEGKNAEALIHRYASID-DSKLIIPDKVTQIFSLYPNVINE  356

Query  382   IINLSLSNGE-ALSEGDQTFER-TNEFLEQFESGQAKEIDTAICD----SLGGCNSQRWF  435
             +I+LSL+NG+  L  GD   +    EF+ QF+SG A  ID +I       + +  +++  
Sbjct  357   VISLSLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKK--  414

Query  436   SLTARNVNEGQIQGVINKLWGV-----DKDYKSVTKFHVFHDSTNFYGSTGNARGQAVVN  490
               +A + + +QIQ++INKLWG       ++ K V +FH+FHDSTNFYGSTG+AR+QA VN
Sbjct  415   -KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVN  473

Query  491   ISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSLVEPENVTRDTATFNLPFIS  550
             I+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFIS
Sbjct  474   IANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFIS  533

Query  551   LGQVGEGKLMVIGNPHYNSILRCPNGYSWEGGVDKNGQCTRNSDSNDMKHFMQNVLRYLS  610
             LG++G GKLMV+GN++YNS+L CPNG+SW G V KNG C+ +SD +DM +F  NV+RYL 
Sbjct  534   LGEIGKGKLMVLGNARYNSVLVCPNGFSWGGTV-KNGTCSLSSDRDDMANFFSNVIRYL-  591

Query  611   DDKWTPDAKASMTVGTNLDTVYFKRHGQVTGNSAEFGFHPDFAGISVEHLSSYGDLDPQE  670
                 T  +   + VGTN+  VYFK  GQ  G+ A+F +++ F+    ++L+S+ DLD + 
Sbjct  592   ----TGSTSNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSK-QTQQLTSFHDLDVNT  646

Query  671   MPLLILNGFEYVTQVGNDPYAIPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMSN  730
             +PL+I+N+++Y  +  N PY IPL AD + PKL++ DVTDLI Y+N+GGSVL+ME +++ 
Sbjct  647   IPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIINT  706

Query  731   LKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPNRVRQQRATGIWVYERYPAVDG  787
                 + S + RLLD+AG++ ++ +SVV ++   + G P+R R QR  GIWV ERY+AV++
Sbjct  707   ----NNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVED  762

Query  788   ------ALPYTIDSKTGEVKWKYQVENKPDDKPKLEVASWLE-DVDGKQETRYAFIDEAD  840
                   +LPY I+S  G + WKY VEN+PDDKPKLEVASW+E + ++K  T+YAFIDE++
Sbjct  763   ESSGQQTLPYVINSD-GSIEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDESQ  821

Query  841   H---------------KTE---DSLKAAKAKIFEKF------PGLKECKDPTYHYEVNCL  876
             H               K E    SL  AK K+++ F       +  ECK++ +HYE+NCL
Sbjct  822   HWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINCL  881

Query  877   EYRPGTGVPVTGGMYVPQYTQLSLNADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKGE  936
             EYRPG ++P+TGG+YVP+YT++ L    A+AMV+AA+LGTNI+ LYQHE YFRT+G+ G 
Sbjct  882   EYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSGA  941

Query  937   RLSSVDLERLYQNMSVWLWNKIEYRYENDKDDELGFKTFTEFLNCYANDAYTGGTQCSDE  996
             RL+SVDL+R+YQNMSVWLWN ++YRY++ + DELGFK FT++LNCY+++   G T C++E
Sbjct  942   RLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPEE  1001

Query  997   LKKSLVDNNMIYGEKSVNKAGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPGA  1056
             LK  L +  MIY+EKS + AG M+PSYPLNYMEKPLTRLMLGRS WDL+IKVDV KYPG 
Sbjct  1002  LKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPGE  1061

Query  1057  VSAEGEKVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIEss-asvpvtvtvaLADDL  1115
             V++ +     T+ + +N + WFAGN Q+TG WA A++  ++  S  + PVT+T+ALADDL
Sbjct  1062  VTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADDL  1121

Query  1116  TGREKHEVALNRPPKVTKTYDLKAND--KVTFKVPYGGLIYIKGNSPKNESAEFTFTGVV  1173
             TGREKHE++L+RPP+++K++ + ++     TF VPYGGLIY +G   +++   +TF+G +
Sbjct  1122  TGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGG--NSQQVKLTFSGTI  1179

Query  1174  KAPFYKDGEWKNALNSPAPLGELESDAFVYTTPKKNLEASNFTGGVAEFAKDLDTFASSM  1233
              AP+Y DG W+N+L S AP+GE+ SD+F++T+PK NL+A  + GG+ +FAKDLD F++ +
Sbjct  1180  DAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADL  1239

Query  1234  NDFYGRND--EDGKHRMFTYKNLTGHKHRFTNDVQISIGDAHSGYPVMNSSFstnsttlp  1291
             NDFY+R++  +++K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +L 
Sbjct  1240  NDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLN  1299

Query  1292  ttplnDWLIWHEVGHNAAETPLTVPGATEVANNVLALYMQDRYLGKMNRVADDITVAPEY  1351
             T PLN WL+WHEVGHN+AE+P+ V GATEV NN+LALYMQDR  GKM+RV +DI  A ++
Sbjct  1300  TMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFDF  1359

Query  1352  LEESNGQAWARGGAGDRLLMYAQLKEWAEKNFDIKQWYPEGDLPKFYSDREGMKGWNLFQ  1411
             ++  +G+AW+ GGAG+RL+M+AQLKEWAE +FDI++WY +  LP FY +  G+KGWNLF+
Sbjct  1360  VNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYND-KLPGFYIEESGIKGWNLFK  1418

Query  1412  LMHRKARGDDVGKTKFGERNYCAESNGNAADKLMLCASWVAQTDLSEFFKKWNPGANAYQ  1471
             LMHR  R ++ ++ +    N C  S    +D LMLCAS  AQTDLSEFFK WNPG++A+ 
Sbjct  1419  LMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKAFL  1478

Query  1472  LPGASEMNFEGGVSQSAYETLAALNLPKPQQGPETINQVTEH  1513
              P+ ++  +EGG++ S+ + + +L+L  PQ+ P +IN VT+H
Sbjct  1479  YPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQH  1520

56) yghJ in NC_017631


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1144 bits (4340),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 712/1482 (49%), Positives = 1049/1482 (71%), Gaps = 81/1482 (5%)

Query  92    LTLGGSQRVTGAT-CNGESSDGFTFTPGEDVTCVAGNTTIATFDTQSEAARSLRAVEKVS  150
             +TL+G+ +  ++  CN++ +  F ++  ++V C     +IATF +  +A ++ R  +   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  151   FSLEDAQELAASDDKKSNAVSLVTSSNSCPANTEQVCLTFSSVIESKRFDSLYKQ-IDLA  209
             +SL  A+E   S  ++ N   L+ +  +   + +++ L F S +++  F++  ++ +DL+
Sbjct  120   LSLISADEYRDSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDLP  177

Query  210   PEEFKKLVNEEVENNAATDKApsthtspvvpvttpgtkpDLNASFVSANAEQFYQYQPTE  269
              ++F   + E + N+   DK PSTH + + P  TPGT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTD  237

Query  270   IILSEGRLVDSMGNGVVGVNYYTSSGRGVTG--------ENGKFNFSWGETISFGIDTFE  321
             +I S GRL+DS G  + GV+Y++++ RG+TG        ++G F+FSWG+ ISF+IDTFE
Sbjct  238   VIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFE  297

Query  322   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSQAGKNDEREVPDVVRKVFAEYPNVINE  381
             LGS R+NK+ + ++ELG +  G N + LIHRY+  + +    +PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTDFYISELGKDNEGKNAEALIHRYASID-DSKLIIPDKVTQIFSLYPNVINE  356

Query  382   IINLSLSNGE-ALSEGDQTFER-TNEFLEQFESGQAKEIDTAICD----SLGGCNSQRWF  435
             +I+LSL+NG+  L  GD   +    EF+ QF+SG A  ID +I       + +  +++  
Sbjct  357   VISLSLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKK--  414

Query  436   SLTARNVNEGQIQGVINKLWGV-----DKDYKSVTKFHVFHDSTNFYGSTGNARGQAVVN  490
               +A + + +QIQ++INKLWG       ++ K V +FH+FHDSTNFYGSTG+AR+QA VN
Sbjct  415   -KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVN  473

Query  491   ISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSLVEPENVTRDTATFNLPFIS  550
             I+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFIS
Sbjct  474   IANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFIS  533

Query  551   LGQVGEGKLMVIGNPHYNSILRCPNGYSWEGGVDKNGQCTRNSDSNDMKHFMQNVLRYLS  610
             LG++G GKLMV+GN++YNS+L CPNG+SW G V KNG C+ +SD +DM +F  NV+RYL 
Sbjct  534   LGEIGKGKLMVLGNARYNSVLVCPNGFSWGGTV-KNGTCSLSSDRDDMANFFSNVIRYL-  591

Query  611   DDKWTPDAKASMTVGTNLDTVYFKRHGQVTGNSAEFGFHPDFAGISVEHLSSYGDLDPQE  670
                 T  +   + VGTN+  VYFK  GQ  G+ A+F +++ F+    ++L+S+ DLD + 
Sbjct  592   ----TGSTSNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSK-QTQQLTSFHDLDVNT  646

Query  671   MPLLILNGFEYVTQVGNDPYAIPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMSN  730
             +PL+I+N+++Y  +  N PY IPL AD + PKL++ DVTDLI Y+N+GGSVL+ME +++ 
Sbjct  647   IPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIINT  706

Query  731   LKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPNRVRQQRATGIWVYERYPAVDG  787
                 + S + RLLD+AG++ ++ +SVV ++   + G P+R R QR  GIWV ERY+AV++
Sbjct  707   ----NNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVED  762

Query  788   ------ALPYTIDSKTGEVKWKYQVENKPDDKPKLEVASWLE-DVDGKQETRYAFIDEAD  840
                   +LPY I+S  G + WKY VEN+PDDKPKLEVASW+E + ++K  T+YAFIDE++
Sbjct  763   ESSGQQTLPYVINSD-GSIEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDESQ  821

Query  841   H---------------KTE---DSLKAAKAKIFEKF------PGLKECKDPTYHYEVNCL  876
             H               K E    SL  AK K+++ F       +  ECK++ +HYE+NCL
Sbjct  822   HWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINCL  881

Query  877   EYRPGTGVPVTGGMYVPQYTQLSLNADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKGE  936
             EYRPG ++P+TGG+YVP+YT++ L    A+AMV+AA+LGTNI+ LYQHE YFRT+G+ G 
Sbjct  882   EYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSGA  941

Query  937   RLSSVDLERLYQNVSVWLWNKIEYRYENDKDDELGFKTFTEFLNCYANDAYTGGTQCSDE  996
             RL+SVDL+R+YQN+SVWLWN ++YRY++ + DELGFK FT++LNCY+++   G T C++E
Sbjct  942   RLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPEE  1001

Query  997   LKKSLVDNNMIYGEKSVNKAGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPGA  1056
             LK  L +  MIY+EKS + AG M+PSYPLNYMEKPLTRLMLGRS WDL+IKVDV KYPG 
Sbjct  1002  LKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPGE  1061

Query  1057  VSAEGEKVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIEss-asvpvtvtvaLADDL  1115
             V++ +     T+ + +N + WFAGN Q+TG WA A++  ++  S  + PVT+T+ALADDL
Sbjct  1062  VTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADDL  1121

Query  1116  TGREKHEVALNRPPKVTKTYDLKAND--KVTFKVPYGGLIYIKGNSPKNESAEFTFTGVV  1173
             TGREKHE++L+RPP+++K++ + ++     TF VPYGGLIY +G   +++   +TF+G +
Sbjct  1122  TGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGG--NSQQVKLTFSGTI  1179

Query  1174  KAPFYKDGEWKNALNSPAPLGELESDAFVYTTPKKNLEASNFTGGVAEFAKDLDTFASSM  1233
              AP+Y DG W+N+L S AP+GE+ SD+F++T+PK NL+A  + GG+ +FAKDLD F++ +
Sbjct  1180  DAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADL  1239

Query  1234  NDFYGRND--EDGKHRMFTYKNLTGHKHRFTNDVQISIGDAHSGYPVMNSSFstnsttlp  1291
             NDFY+R++  +++K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +L 
Sbjct  1240  NDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLN  1299

Query  1292  ttplnDWLIWHEVGHNAAETPLTVPGATEVANNVLALYMQDRYLGKMNRVADDITVAPEY  1351
             T PLN WL+WHEVGHN+AE+P+ V GATEV NN+LALYMQDR  GKM+RV +DI  A ++
Sbjct  1300  TMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFDF  1359

Query  1352  LEESNGQAWARGGAGDRLLMYAQLKEWAEKNFDIKQWYPEGDLPEFYSDREGMKGWNLFQ  1411
             ++  +G+AW+ GGAG+RL+M+AQLKEWAE +FDI++WY +  LP FY +  G+KGWNLF+
Sbjct  1360  VNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYND-KLPGFYIEESGIKGWNLFK  1418

Query  1412  LMHRKARGDDVGKTKFGERNYCAESNGNAADKLMLCASWVAQTDLSEFFKKWNPGANAYQ  1471
             LMHR  R ++ ++ +    N C  S    +D LMLCAS  AQTDLSEFFK WNPG++A+ 
Sbjct  1419  LMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKAFL  1478

Query  1472  LPGASEMNFEGGVSQSAYETLAALNLPKPQQGPETINQVTEH  1513
              P+ ++  +EGG++ S+ + + +L+L  PQ+ P +IN VT+H
Sbjct  1479  YPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQH  1520

57) yghJ in NC_017652


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1144 bits (4340),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 712/1482 (49%), Positives = 1049/1482 (71%), Gaps = 81/1482 (5%)

Query  92    LTLGGSQRVTGAT-CNGESSDGFTFTPGEDVTCVAGNTTIATFDTQSEAARSLRAVEKVS  150
             +TL+G+ +  ++  CN++ +  F ++  ++V C     +IATF +  +A ++ R  +   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  151   FSLEDAQELAASDDKKSNAVSLVTSSNSCPANTEQVCLTFSSVIESKRFDSLYKQ-IDLA  209
             +SL  A+E   S  ++ N   L+ +  +   + +++ L F S +++  F++  ++ +DL+
Sbjct  120   LSLISADEYRDSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDLP  177

Query  210   PEEFKKLVNEEVENNAATDKApsthtspvvpvttpgtkpDLNASFVSANAEQFYQYQPTE  269
              ++F   + E + N+   DK PSTH + + P  TPGT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTD  237

Query  270   IILSEGRLVDSMGNGVVGVNYYTSSGRGVTG--------ENGKFNFSWGETISFGIDTFE  321
             +I S GRL+DS G  + GV+Y++++ RG+TG        ++G F+FSWG+ ISF+IDTFE
Sbjct  238   VIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFE  297

Query  322   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSQAGKNDEREVPDVVRKVFAEYPNVINE  381
             LGS R+NK+ + ++ELG +  G N + LIHRY+  + +    +PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTDFYISELGKDNEGKNAEALIHRYASID-DSKLIIPDKVTQIFSLYPNVINE  356

Query  382   IINLSLSNGE-ALSEGDQTFER-TNEFLEQFESGQAKEIDTAICD----SLGGCNSQRWF  435
             +I+LSL+NG+  L  GD   +    EF+ QF+SG A  ID +I       + +  +++  
Sbjct  357   VISLSLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKK--  414

Query  436   SLTARNVNEGQIQGVINKLWGV-----DKDYKSVTKFHVFHDSTNFYGSTGNARGQAVVN  490
               +A + + +QIQ++INKLWG       ++ K V +FH+FHDSTNFYGSTG+AR+QA VN
Sbjct  415   -KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVN  473

Query  491   ISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSLVEPENVTRDTATFNLPFIS  550
             I+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFIS
Sbjct  474   IANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFIS  533

Query  551   LGQVGEGKLMVIGNPHYNSILRCPNGYSWEGGVDKNGQCTRNSDSNDMKHFMQNVLRYLS  610
             LG++G GKLMV+GN++YNS+L CPNG+SW G V KNG C+ +SD +DM +F  NV+RYL 
Sbjct  534   LGEIGKGKLMVLGNARYNSVLVCPNGFSWGGTV-KNGTCSLSSDRDDMANFFSNVIRYL-  591

Query  611   DDKWTPDAKASMTVGTNLDTVYFKRHGQVTGNSAEFGFHPDFAGISVEHLSSYGDLDPQE  670
                 T  +   + VGTN+  VYFK  GQ  G+ A+F +++ F+    ++L+S+ DLD + 
Sbjct  592   ----TGSTSNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSK-QTQQLTSFHDLDVNT  646

Query  671   MPLLILNGFEYVTQVGNDPYAIPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMSN  730
             +PL+I+N+++Y  +  N PY IPL AD + PKL++ DVTDLI Y+N+GGSVL+ME +++ 
Sbjct  647   IPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIINT  706

Query  731   LKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPNRVRQQRATGIWVYERYPAVDG  787
                 + S + RLLD+AG++ ++ +SVV ++   + G P+R R QR  GIWV ERY+AV++
Sbjct  707   ----NNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVED  762

Query  788   ------ALPYTIDSKTGEVKWKYQVENKPDDKPKLEVASWLE-DVDGKQETRYAFIDEAD  840
                   +LPY I+S  G + WKY VEN+PDDKPKLEVASW+E + ++K  T+YAFIDE++
Sbjct  763   ESSGQQTLPYVINSD-GSIEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDESQ  821

Query  841   H---------------KTE---DSLKAAKAKIFEKF------PGLKECKDPTYHYEVNCL  876
             H               K E    SL  AK K+++ F       +  ECK++ +HYE+NCL
Sbjct  822   HWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINCL  881

Query  877   EYRPGTGVPVTGGMYVPQYTQLSLNADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKGE  936
             EYRPG ++P+TGG+YVP+YT++ L    A+AMV+AA+LGTNI+ LYQHE YFRT+G+ G 
Sbjct  882   EYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSGA  941

Query  937   RLSSVDLERLYQNVSVWLWNKIEYRYENDKDDELGFKTFTEFLNCYANDAYTGGTQCSDE  996
             RL+SVDL+R+YQN+SVWLWN ++YRY++ + DELGFK FT++LNCY+++   G T C++E
Sbjct  942   RLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPEE  1001

Query  997   LKKSLVDNNMIYGEKSVNKAGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPGA  1056
             LK  L +  MIY+EKS + AG M+PSYPLNYMEKPLTRLMLGRS WDL+IKVDV KYPG 
Sbjct  1002  LKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPGE  1061

Query  1057  VSAEGEKVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIEss-asvpvtvtvaLADDL  1115
             V++ +     T+ + +N + WFAGN Q+TG WA A++  ++  S  + PVT+T+ALADDL
Sbjct  1062  VTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADDL  1121

Query  1116  TGREKHEVALNRPPKVTKTYDLKAND--KVTFKVPYGGLIYIKGNSPKNESAEFTFTGVV  1173
             TGREKHE++L+RPP+++K++ + ++     TF VPYGGLIY +G   +++   +TF+G +
Sbjct  1122  TGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGG--NSQQVKLTFSGTI  1179

Query  1174  KAPFYKDGEWKNALNSPAPLGELESDAFVYTTPKKNLEASNFTGGVAEFAKDLDTFASSM  1233
              AP+Y DG W+N+L S AP+GE+ SD+F++T+PK NL+A  + GG+ +FAKDLD F++ +
Sbjct  1180  DAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADL  1239

Query  1234  NDFYGRND--EDGKHRMFTYKNLTGHKHRFTNDVQISIGDAHSGYPVMNSSFstnsttlp  1291
             NDFY+R++  +++K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +L 
Sbjct  1240  NDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLN  1299

Query  1292  ttplnDWLIWHEVGHNAAETPLTVPGATEVANNVLALYMQDRYLGKMNRVADDITVAPEY  1351
             T PLN WL+WHEVGHN+AE+P+ V GATEV NN+LALYMQDR  GKM+RV +DI  A ++
Sbjct  1300  TMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFDF  1359

Query  1352  LEESNGQAWARGGAGDRLLMYAQLKEWAEKNFDIKQWYPEGDLPEFYSDREGMKGWNLFQ  1411
             ++  +G+AW+ GGAG+RL+M+AQLKEWAE +FDI++WY +  LP FY +  G+KGWNLF+
Sbjct  1360  VNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYND-KLPGFYIEESGIKGWNLFK  1418

Query  1412  LMHRKARGDDVGKTKFGERNYCAESNGNAADKLMLCASWVAQTDLSEFFKKWNPGANAYQ  1471
             LMHR  R ++ ++ +    N C  S    +D LMLCAS  AQTDLSEFFK WNPG++A+ 
Sbjct  1419  LMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKAFL  1478

Query  1472  LPGASEMNFEGGVSQSAYETLAALNLPKPQQGPETINQVTEH  1513
              P+ ++  +EGG++ S+ + + +L+L  PQ+ P +IN VT+H
Sbjct  1479  YPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQH  1520

58) yghJ in NC_017651


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1144 bits (4340),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 712/1482 (49%), Positives = 1049/1482 (71%), Gaps = 81/1482 (5%)

Query  92    LTLGGSQRVTGAT-CNGESSDGFTFTPGEDVTCVAGNTTIATFDTQSEAARSLRAVEKVS  150
             +TL+G+ +  ++  CN++ +  F ++  ++V C     +IATF +  +A ++ R  +   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  151   FSLEDAQELAASDDKKSNAVSLVTSSNSCPANTEQVCLTFSSVIESKRFDSLYKQ-IDLA  209
             +SL  A+E   S  ++ N   L+ +  +   + +++ L F S +++  F++  ++ +DL+
Sbjct  120   LSLISADEYRDSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDLP  177

Query  210   PEEFKKLVNEEVENNAATDKApsthtspvvpvttpgtkpDLNASFVSANAEQFYQYQPTE  269
              ++F   + E + N+   DK PSTH + + P  TPGT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTD  237

Query  270   IILSEGRLVDSMGNGVVGVNYYTSSGRGVTG--------ENGKFNFSWGETISFGIDTFE  321
             +I S GRL+DS G  + GV+Y++++ RG+TG        ++G F+FSWG+ ISF+IDTFE
Sbjct  238   VIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFE  297

Query  322   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSQAGKNDEREVPDVVRKVFAEYPNVINE  381
             LGS R+NK+ + ++ELG +  G N + LIHRY+  + +    +PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTDFYISELGKDNEGKNAEALIHRYASID-DSKLIIPDKVTQIFSLYPNVINE  356

Query  382   IINLSLSNGE-ALSEGDQTFER-TNEFLEQFESGQAKEIDTAICD----SLGGCNSQRWF  435
             +I+LSL+NG+  L  GD   +    EF+ QF+SG A  ID +I       + +  +++  
Sbjct  357   VISLSLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKK--  414

Query  436   SLTARNVNEGQIQGVINKLWGV-----DKDYKSVTKFHVFHDSTNFYGSTGNARGQAVVN  490
               +A + + +QIQ++INKLWG       ++ K V +FH+FHDSTNFYGSTG+AR+QA VN
Sbjct  415   -KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVN  473

Query  491   ISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSLVEPENVTRDTATFNLPFIS  550
             I+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFIS
Sbjct  474   IANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFIS  533

Query  551   LGQVGEGKLMVIGNPHYNSILRCPNGYSWEGGVDKNGQCTRNSDSNDMKHFMQNVLRYLS  610
             LG++G GKLMV+GN++YNS+L CPNG+SW G V KNG C+ +SD +DM +F  NV+RYL 
Sbjct  534   LGEIGKGKLMVLGNARYNSVLVCPNGFSWGGTV-KNGTCSLSSDRDDMANFFSNVIRYL-  591

Query  611   DDKWTPDAKASMTVGTNLDTVYFKRHGQVTGNSAEFGFHPDFAGISVEHLSSYGDLDPQE  670
                 T  +   + VGTN+  VYFK  GQ  G+ A+F +++ F+    ++L+S+ DLD + 
Sbjct  592   ----TGSTSNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSK-QTQQLTSFHDLDVNT  646

Query  671   MPLLILNGFEYVTQVGNDPYAIPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMSN  730
             +PL+I+N+++Y  +  N PY IPL AD + PKL++ DVTDLI Y+N+GGSVL+ME +++ 
Sbjct  647   IPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIINT  706

Query  731   LKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPNRVRQQRATGIWVYERYPAVDG  787
                 + S + RLLD+AG++ ++ +SVV ++   + G P+R R QR  GIWV ERY+AV++
Sbjct  707   ----NNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVED  762

Query  788   ------ALPYTIDSKTGEVKWKYQVENKPDDKPKLEVASWLE-DVDGKQETRYAFIDEAD  840
                   +LPY I+S  G + WKY VEN+PDDKPKLEVASW+E + ++K  T+YAFIDE++
Sbjct  763   ESSGQQTLPYVINSD-GSIEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDESQ  821

Query  841   H---------------KTE---DSLKAAKAKIFEKF------PGLKECKDPTYHYEVNCL  876
             H               K E    SL  AK K+++ F       +  ECK++ +HYE+NCL
Sbjct  822   HWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINCL  881

Query  877   EYRPGTGVPVTGGMYVPQYTQLSLNADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKGE  936
             EYRPG ++P+TGG+YVP+YT++ L    A+AMV+AA+LGTNI+ LYQHE YFRT+G+ G 
Sbjct  882   EYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSGA  941

Query  937   RLSSVDLERLYQNVSVWLWNKIEYRYENDKDDELGFKTFTEFLNCYANDAYTGGTQCSDE  996
             RL+SVDL+R+YQN+SVWLWN ++YRY++ + DELGFK FT++LNCY+++   G T C++E
Sbjct  942   RLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPEE  1001

Query  997   LKKSLVDNNMIYGEKSVNKAGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPGA  1056
             LK  L +  MIY+EKS + AG M+PSYPLNYMEKPLTRLMLGRS WDL+IKVDV KYPG 
Sbjct  1002  LKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPGE  1061

Query  1057  VSAEGEKVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIEss-asvpvtvtvaLADDL  1115
             V++ +     T+ + +N + WFAGN Q+TG WA A++  ++  S  + PVT+T+ALADDL
Sbjct  1062  VTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADDL  1121

Query  1116  TGREKHEVALNRPPKVTKTYDLKAND--KVTFKVPYGGLIYIKGNSPKNESAEFTFTGVV  1173
             TGREKHE++L+RPP+++K++ + ++     TF VPYGGLIY +G   +++   +TF+G +
Sbjct  1122  TGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGG--NSQQVKLTFSGTI  1179

Query  1174  KAPFYKDGEWKNALNSPAPLGELESDAFVYTTPKKNLEASNFTGGVAEFAKDLDTFASSM  1233
              AP+Y DG W+N+L S AP+GE+ SD+F++T+PK NL+A  + GG+ +FAKDLD F++ +
Sbjct  1180  DAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADL  1239

Query  1234  NDFYGRND--EDGKHRMFTYKNLTGHKHRFTNDVQISIGDAHSGYPVMNSSFstnsttlp  1291
             NDFY+R++  +++K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +L 
Sbjct  1240  NDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLN  1299

Query  1292  ttplnDWLIWHEVGHNAAETPLTVPGATEVANNVLALYMQDRYLGKMNRVADDITVAPEY  1351
             T PLN WL+WHEVGHN+AE+P+ V GATEV NN+LALYMQDR  GKM+RV +DI  A ++
Sbjct  1300  TMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFDF  1359

Query  1352  LEESNGQAWARGGAGDRLLMYAQLKEWAEKNFDIKQWYPEGDLPEFYSDREGMKGWNLFQ  1411
             ++  +G+AW+ GGAG+RL+M+AQLKEWAE +FDI++WY +  LP FY +  G+KGWNLF+
Sbjct  1360  VNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYND-KLPGFYIEESGIKGWNLFK  1418

Query  1412  LMHRKARGDDVGKTKFGERNYCAESNGNAADKLMLCASWVAQTDLSEFFKKWNPGANAYQ  1471
             LMHR  R ++ ++ +    N C  S    +D LMLCAS  AQTDLSEFFK WNPG++A+ 
Sbjct  1419  LMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKAFL  1478

Query  1472  LPGASEMNFEGGVSQSAYETLAALNLPKPQQGPETINQVTEH  1513
              P+ ++  +EGG++ S+ + + +L+L  PQ+ P +IN VT+H
Sbjct  1479  YPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQH  1520

59) ECNA114_3049 in NC_017644


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1144 bits (4340),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 712/1482 (49%), Positives = 1049/1482 (71%), Gaps = 81/1482 (5%)

Query  92    LTLGGSQRVTGAT-CNGESSDGFTFTPGEDVTCVAGNTTIATFDTQSEAARSLRAVEKVS  150
             +TL+G+ +  ++  CN++ +  F ++  ++V C     +IATF +  +A ++ R  +   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  151   FSLEDAQELAASDDKKSNAVSLVTSSNSCPANTEQVCLTFSSVIESKRFDSLYKQ-IDLA  209
             +SL  A+E   S  ++ N   L+ +  +   + +++ L F S +++  F++  ++ +DL+
Sbjct  120   LSLISADEYRDSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDLP  177

Query  210   PEEFKKLVNEEVENNAATDKApsthtspvvpvttpgtkpDLNASFVSANAEQFYQYQPTE  269
              ++F   + E + N+   DK PSTH + + P  TPGT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTD  237

Query  270   IILSEGRLVDSMGNGVVGVNYYTSSGRGVTG--------ENGKFNFSWGETISFGIDTFE  321
             +I S GRL+DS G  + GV+Y++++ RG+TG        ++G F+FSWG+ ISF+IDTFE
Sbjct  238   VIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFE  297

Query  322   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSQAGKNDEREVPDVVRKVFAEYPNVINE  381
             LGS R+NK+ + ++ELG +  G N + LIHRY+  + +    +PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTDFYISELGKDNEGKNAEALIHRYASID-DSKLIIPDKVTQIFSLYPNVINE  356

Query  382   IINLSLSNGE-ALSEGDQTFER-TNEFLEQFESGQAKEIDTAICD----SLGGCNSQRWF  435
             +I+LSL+NG+  L  GD   +    EF+ QF+SG A  ID +I       + +  +++  
Sbjct  357   VISLSLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKK--  414

Query  436   SLTARNVNEGQIQGVINKLWGV-----DKDYKSVTKFHVFHDSTNFYGSTGNARGQAVVN  490
               +A + + +QIQ++INKLWG       ++ K V +FH+FHDSTNFYGSTG+AR+QA VN
Sbjct  415   -KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVN  473

Query  491   ISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSLVEPENVTRDTATFNLPFIS  550
             I+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFIS
Sbjct  474   IANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFIS  533

Query  551   LGQVGEGKLMVIGNPHYNSILRCPNGYSWEGGVDKNGQCTRNSDSNDMKHFMQNVLRYLS  610
             LG++G GKLMV+GN++YNS+L CPNG+SW G V KNG C+ +SD +DM +F  NV+RYL 
Sbjct  534   LGEIGKGKLMVLGNARYNSVLVCPNGFSWGGTV-KNGTCSLSSDRDDMANFFSNVIRYL-  591

Query  611   DDKWTPDAKASMTVGTNLDTVYFKRHGQVTGNSAEFGFHPDFAGISVEHLSSYGDLDPQE  670
                 T  +   + VGTN+  VYFK  GQ  G+ A+F +++ F+    ++L+S+ DLD + 
Sbjct  592   ----TGSTSNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSK-QTQQLTSFHDLDVNT  646

Query  671   MPLLILNGFEYVTQVGNDPYAIPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMSN  730
             +PL+I+N+++Y  +  N PY IPL AD + PKL++ DVTDLI Y+N+GGSVL+ME +++ 
Sbjct  647   IPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIINT  706

Query  731   LKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPNRVRQQRATGIWVYERYPAVDG  787
                 + S + RLLD+AG++ ++ +SVV ++   + G P+R R QR  GIWV ERY+AV++
Sbjct  707   ----NNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVED  762

Query  788   ------ALPYTIDSKTGEVKWKYQVENKPDDKPKLEVASWLE-DVDGKQETRYAFIDEAD  840
                   +LPY I+S  G + WKY VEN+PDDKPKLEVASW+E + ++K  T+YAFIDE++
Sbjct  763   ESSGQQTLPYVINSD-GSIEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDESQ  821

Query  841   H---------------KTE---DSLKAAKAKIFEKF------PGLKECKDPTYHYEVNCL  876
             H               K E    SL  AK K+++ F       +  ECK++ +HYE+NCL
Sbjct  822   HWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINCL  881

Query  877   EYRPGTGVPVTGGMYVPQYTQLSLNADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKGE  936
             EYRPG ++P+TGG+YVP+YT++ L    A+AMV+AA+LGTNI+ LYQHE YFRT+G+ G 
Sbjct  882   EYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSGA  941

Query  937   RLSSVDLERLYQNVSVWLWNKIEYRYENDKDDELGFKTFTEFLNCYANDAYTGGTQCSDE  996
             RL+SVDL+R+YQN+SVWLWN ++YRY++ + DELGFK FT++LNCY+++   G T C++E
Sbjct  942   RLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPEE  1001

Query  997   LKKSLVDNNMIYGEKSVNKAGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPGA  1056
             LK  L +  MIY+EKS + AG M+PSYPLNYMEKPLTRLMLGRS WDL+IKVDV KYPG 
Sbjct  1002  LKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPGE  1061

Query  1057  VSAEGEKVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIEss-asvpvtvtvaLADDL  1115
             V++ +     T+ + +N + WFAGN Q+TG WA A++  ++  S  + PVT+T+ALADDL
Sbjct  1062  VTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADDL  1121

Query  1116  TGREKHEVALNRPPKVTKTYDLKAND--KVTFKVPYGGLIYIKGNSPKNESAEFTFTGVV  1173
             TGREKHE++L+RPP+++K++ + ++     TF VPYGGLIY +G   +++   +TF+G +
Sbjct  1122  TGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGG--NSQQVKLTFSGTI  1179

Query  1174  KAPFYKDGEWKNALNSPAPLGELESDAFVYTTPKKNLEASNFTGGVAEFAKDLDTFASSM  1233
              AP+Y DG W+N+L S AP+GE+ SD+F++T+PK NL+A  + GG+ +FAKDLD F++ +
Sbjct  1180  DAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADL  1239

Query  1234  NDFYGRND--EDGKHRMFTYKNLTGHKHRFTNDVQISIGDAHSGYPVMNSSFstnsttlp  1291
             NDFY+R++  +++K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +L 
Sbjct  1240  NDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLN  1299

Query  1292  ttplnDWLIWHEVGHNAAETPLTVPGATEVANNVLALYMQDRYLGKMNRVADDITVAPEY  1351
             T PLN WL+WHEVGHN+AE+P+ V GATEV NN+LALYMQDR  GKM+RV +DI  A ++
Sbjct  1300  TMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFDF  1359

Query  1352  LEESNGQAWARGGAGDRLLMYAQLKEWAEKNFDIKQWYPEGDLPEFYSDREGMKGWNLFQ  1411
             ++  +G+AW+ GGAG+RL+M+AQLKEWAE +FDI++WY +  LP FY +  G+KGWNLF+
Sbjct  1360  VNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYND-KLPGFYIEESGIKGWNLFK  1418

Query  1412  LMHRKARGDDVGKTKFGERNYCAESNGNAADKLMLCASWVAQTDLSEFFKKWNPGANAYQ  1471
             LMHR  R ++ ++ +    N C  S    +D LMLCAS  AQTDLSEFFK WNPG++A+ 
Sbjct  1419  LMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKAFL  1478

Query  1472  LPGASEMNFEGGVSQSAYETLAALNLPKPQQGPETINQVTEH  1513
              P+ ++  +EGG++ S+ + + +L+L  PQ+ P +IN VT+H
Sbjct  1479  YPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQH  1520

60) yghJ in NC_011601


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1143 bits (4333),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 716/1485 (49%), Positives = 1052/1485 (71%), Gaps = 85/1485 (5%)

Query  94    LTLGGSQRITGAT-CNGESSDGFTFTPGDKVTCVAGNNTTIATFDTQSEAARSLRAVEKV  152
             +TL+G+ ++ ++  CN++ +  F ++  D+V C   N  +IATF +  +A ++ R  +  
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTI-NGRSIATFTAPFDANKNGRNTDSE  118

Query  153   SFSLEDAQELAASDDKKSNAVSLVTSSNSCPADTEQVCLTFSSVIESKRFDSLYKQ-IDL  211
              +SL  A+E   S  ++ N   L+ +  +  +D  ++ L F S +++  F++  ++ +DL
Sbjct  119   VLSLISADEYRDSPVRQENLQILMKNMATIHGD--KISLVFRSTLDALTFENYLRHNLDL  176

Query  212   APEEFKKLVNEEVENNAATDKApsthtspvvpvttpgtkpDLNASFVSANAEQFYQYQPT  271
             + ++F   + E + N+   DK PSTH + + P  TPGT ++LN++FVSANAE+   Y PT
Sbjct  177   PKDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPT  236

Query  272   EIILSEGRLVDSQGYGVAGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTF  323
             ++I S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ ISF+IDTF
Sbjct  237   DVIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTF  296

Query  324   ELGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVIN  383
             ELGS R+NK+ + ++ELG +  G N + LIHRY++ ++++  ++PD V ++F+ YPNVIN
Sbjct  297   ELGSTRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKL-IIPDKVTQIFSLYPNVIN  355

Query  384   EIINLSLSNGAT-LDEGDQNV-VLPNEFIEQFKTGQAKEIDTAICA----KTDGCNEARW  437
             E+I+LSL+NG   LD GD +  ++P EF+ QF +G A  ID +I +    K ++    + 
Sbjct  356   EVISLSLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKK-  414

Query  438   FSLTTRNVNDGQIQGVINKLWGV-----DKDYKSVTKFHVFHDSTNFYGSTGNARGQAVV  492
                ++ + + +QIQ++INKLWG       ++ K V +FH+FHDSTNFYGSTG+AR+QA V
Sbjct  415   --KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAV  472

Query  493   NISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVQPENVTRDTATFNLPFI  552
             NI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFI
Sbjct  473   NIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFI  532

Query  553   SLGQVGEGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLSGDSDDMKHFMQNVLRYL  612
             SLG++G GKLMV+GN++YNS+L CPNG+SW G V K+G C+LS+D DDM +F  NV+RYL
Sbjct  533   SLGEIGKGKLMVLGNARYNSVLVCPNGFSWGGTV-KNGTCSLSSDRDDMANFFSNVIRYL  591

Query  613   SDDKWTPDAKASMTVGTNLDTVYFKRHGQVTGNSAEFGFHPDFAGISVEHLSSYGDLDPQ  672
                  T  +   + VGTN+  VYFK  GQ  G+ A+F +++ F+    ++L+S+ DLD +
Sbjct  592   -----TGSTSNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSK-QTQQLTSFHDLDVN  645

Query  673   EMPLLILNGFEYVTQVGNDPYAIPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMS  732
              +PL+I+N+++Y  +  N PY IPL AD + PKL++ DVTDLI Y+N+GGSVL+ME +++
Sbjct  646   TIPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIIN  705

Query  733   NLKEESASGFVRLLDAAGLSMALNKSVV---NTDPQGYPNRVRQQREKGIWVYERYPAVD  789
                  + S + RLLD+AG++ ++ +SVV   N  + G P+R R QRE GIWV ERY+AV+
Sbjct  706   T----NNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVE  761

Query  790   SAQP-----PYTIDPDTGKVTWKYQEEGKPDDKPKLEVASW-QEDVDGKQVTRYAFIDEA  843
                +     PY I++D G + WKY  E +PDDKPKLEVASW + + ++K +T+YAFIDE+
Sbjct  762   DESSGQQTLPYVINSD-GSIEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDES  820

Query  844   EH------------------STEESLEAAKAKIFEKF------PGLQECKDSTYHYEINC  879
             +H                    + SL  AK K+++ F       +  ECK+S +HYEINC
Sbjct  821   QHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINC  880

Query  880   LERRPGTDVPVTGGMYVPRYTQLNLDADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKG  939
             LE RPG  +P+TGG+YVPRYT+++L+   A+AMV+AA+LGTNI+ LYQHE YFRT+G+ G
Sbjct  881   LEYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSG  940

Query  940   ERLSSVDLERLYQNMSVWLWNKIEYRYENDKDDELGFKTFTEFLNCYANNAYSEGTQCSA  999
              RL+SVDL+R+YQNMSVWLWN ++YRY++ + DELGFK FT++LNCY++N  +  T C+ 
Sbjct  941   ARLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPE  1000

Query  1000  DLKKSLVDNNMIYGDGSSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPG  1058
             +LK  L +  MIY++ S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IKVDV KYPG
Sbjct  1001  ELKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPG  1060

Query  1059  AVSAEGEKVTETISLYSNPTKWFAGNMQSTGLWAPAQQEVTIEst-asvpvtvtvaLADD  1117
              V++ +     T+ + +N + WFAGN Q+TG WA A+Q  ++  +  + PVT+T+ALADD
Sbjct  1061  EVTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADD  1120

Query  1118  LTGREKHEVALNRPPKVTKTYDLKAND--KVTFKVPYGGLIYIKGNSPKNESAEFTFTGV  1175
             LTGREKHE++L+RPP+++K++ + ++     TF VPYGGLIY +G   +++   +TF+G 
Sbjct  1121  LTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGG--NSQQVKLTFSGT  1178

Query  1176  VKAPFYKDGEWKNALNSPAPLGELESDSFVYTAPKNNLNASNYSNYTDGVAEFAKELDTF  1235
             + AP+Y DG W+N+L S AP+GE+ SD+F++TAPK NLNA     Y +G+ +FAK+LD F
Sbjct  1179  IDAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNA---DGYLGGIEQFAKDLDQF  1235

Query  1236  ASSMNDFYGRD--GESGNHRMFTYKALTGHKHRFANDVQISIGDAHSGYPVMNSSFstns  1293
             ++ +NDFY+RD  ++++++R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S
Sbjct  1236  SADLNDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSS  1295

Query  1294  ttlpttplnDWLIWHEVGHNAAETPLNVPGATEVANNVLALYMQDRYLGKMNRVADDITV  1353
              +L T PLN WL+WHEVGHN+AE+P+NV GATEV NN+LALYMQDR  GKM+RV +DI  
Sbjct  1296  RSLNTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRY  1355

Query  1354  APEYLDESNGQAWARGGAGDRLLMYAQLKEWAEENFDIKQWYPDGELPKFYSDRKGMKGW  1413
             A ++++  +G+AW+ GGAG+RL+M+AQLKEWAE +FDI++WY D  LP FY +  G+KGW
Sbjct  1356  AFDFVNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYND-KLPGFYIEESGIKGW  1414

Query  1414  NLFQLMHRKARGDDVSNDKFGGRNYCAESNGNAADTLMLCASWVAQADLSEFFKKWNPGA  1473
             NLF+LMHR  R ++  + +  G N C  S    +D LMLCAS  AQ+DLSEFFK WNPG+
Sbjct  1415  NLFKLMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGS  1474

Query  1474  NAYQLPGASEMSFEGGVSQSAYNTLAAMHLSKPEKGPETINKVTE  1518
             +A+  P+ ++  +EGG++ S+ + + ++ L+ P+K P +IN VT+
Sbjct  1475  KAFLYPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQ  1519

61) yghJ in NC_011740


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1133 bits (4296),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 719/1480 (49%), Positives = 1042/1480 (71%), Gaps = 81/1480 (5%)

Query  99    LTLGGSQRVSGAF-CNNAPSVGFTFTPGDTVTCVIGGTTIATFDTLAETARSRSDVEKVA  157
             +TL+G+ +  +++ CN+  +  F ++  D V C I G +IATF +  ++ ++  + +   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  158   FSLEDAQELASSENKKNNALALVTSSNSCPSDDEQVCLNFTSVVDRARFEKLYKQ-IDLA  216
             +SL  A+E   S  +++N   L+ +  +  +D  ++ L F S +D   FE+  ++ +DL+
Sbjct  120   LSLISADEYRDSPVRQENLQILMKNMATIHGD--KISLVFRSTLDALTFENYLRHNLDLP  177

Query  217   KEDFQKLVNEEVENNAATDKAPSTHtspvvpattpgttpDLNAKFVSANAEQFYQYQPTE  276
             K++F   + E + N+   DK PSTH + + P+ TPGT+++LN+ FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTD  237

Query  277   IILSEGRLVDSLGNGVVGVNYYTSSGRGVTG--------ENGKFSFSWGETISFGIDTFE  328
             +I S GRL+DS G  + GV+Y++++ RG+TG        ++G F FSWG+ ISF+IDTFE
Sbjct  238   VIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFE  297

Query  329   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSQAGENNDREIPDVVRKVFAEYPNVINE  388
             LGS R+NK+ + ++ELG +  G N + LIHRY+   +++   IPD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTDFYISELGKDNEGKNAEALIHRYASI-DDSKLIIPDKVTQIFSLYPNVINE  356

Query  389   IINLSLSNGAT-LNEGDQTVEL-PNEFLAQLKSGQAKEIDTAICNTTG---SCNSPRWFS  443
             +I+LSL+NG   L+ GD   ++ P EF+ Q+ SG A  ID +I   +      + P+   
Sbjct  357   VISLSLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPK--K  414

Query  444   LTARNINEGQIQGVINKLWGVDEDY-----KSVSKFHVFHDSTNFYGSTGNARGQAVINI  498
              +A + + +QIQ++INKLWG  +       K V +FH+FHDSTNFYGSTG+AR+QA +NI
Sbjct  415   KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNI  474

Query  499   SNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVRPENVTRETATFNLPFISL  558
             +N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ +T+TFNLPFISL
Sbjct  475   ANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFISL  534

Query  559   GQVGDGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENMLRYLSN  618
             G++G GKLMV+GN++YNS+L CPNG+SW G V K+G C+L+SD DDM NF  N++RYL+ 
Sbjct  535   GEIGKGKLMVLGNARYNSVLVCPNGFSWGGTV-KNGTCSLSSDRDDMANFFSNVIRYLTG  593

Query  619   DRWLPDAKSNMTVGTNLDTVYFKKHGQVLGNSAPFAFHKDFAGITVKPMTSYGNLNPDEV  678
                   + +++ VGTN+  VYFK  GQ +G+ A F ++  F+  T + +TS+ +L+ + +
Sbjct  594   S-----TSNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSKQT-QQLTSFHDLDVNTI  647

Query  679   PLLILNGFEYVTHWGSDPYSIPLRADSSKPKLTQQDVTDLIAYMNKGGSVLIMENVMSNL  738
             PL+I+N+++Y     + PY IPL AD + PKL++ DVTDLI Y+N+GGSVL+ME +++  
Sbjct  648   PLIIINAYDYKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIINT-  706

Query  739   KEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQRRSTPIWVYERYPAVDGK  795
                + S + RLLD+AG++ ++ +SVV ++   + G PDR R +R   IWV ERY+AV++ 
Sbjct  707   ---NNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVEDE  763

Query  796   P------PYTIDDTTKEVIWKYQQENKPDDKPKLEVASW-QEEVEGKQVTQFAFIDEADH  848
             +      PY I+     + WKY  EN+PDDKPKLEVASW + E  +K +T++AFIDE++H
Sbjct  764   SSGQQTLPYVINSDGS-IEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDESQH  822

Query  849   --------------KTPE----SLAAAKQRILDAF------PGLEECKDSDYHYEVNCLE  884
                             PE    SL+ AK+++LDAF       +  ECK+S++HYE+NCLE
Sbjct  823   WKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINCLE  882

Query  885   YRPGTDVPVTGGMFVPRYTQLNLDADTAKAMLQAADLGTNIQRLYQHELYFRTNGRQGER  944
             YRPG  +P+TGG++VPRYT+++L+   A+AM++AA+LGTNI+ LYQHE YFRT+G+ G R
Sbjct  883   YRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSGAR  942

Query  945   LNSVDLERLYQNMSVWLWNETKYRYEEGKEDELGFKTFTEFLNCYTNNAYVG-TQCSAEL  1003
             LNSVDL+R+YQNMSVWLWN+  YRY++ + DELGFK FT++LNCYT+N   G T C+ EL
Sbjct  943   LNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPEEL  1002

Query  1004  KKSLIDNKMIYGEESSK-VGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPGVV  1062
             K  L +  MIY+E S+   G M+PSYPLNYMEKPLTRLMLGRS WDL+IKVDV KYPG V
Sbjct  1003  KDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPGEV  1062

Query  1063  DTNGETVTQNINLYSDPTKWFAGNMQSTGLWAPAQQEVSIE-SKatvpvtvtvalaDDLT  1121
              T +      +++ ++ + WFAGN Q+TG WA A+Q  S+  S  T PVT+T+ALADDLT
Sbjct  1063  TTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADDLT  1122

Query  1122  GREKHEVSLNRPPRVTKTYDLKAND--KVTFKVPYGGLIYIKGDSKEVQSADFTFTGVVK  1179
             GREKHE++L+RPPR++K++ + ++     TF VPYGGLIY +G++   Q   +TF+G + 
Sbjct  1123  GREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNS--QQVKLTFSGTID  1180

Query  1180  APFYKDGKWQHDLNSPAPLGELESASFVYTTPKKNLNASNYTGGLEQFAKDLDTFASSMN  1239
             AP+Y DGKW++ L S AP+GE+ S +F++T+PK NLNA  Y GG+EQFAKDLD F++ +N
Sbjct  1181  APLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADLN  1240

Query  1240  DFYGRD--SESGNHRMFTYKALTGHKHRFANDVQISIGDAHSGYPVMnssfspnsttlpt  1297
             DFY+RD  ++++++R  T K++  ++H+F NDV IS+G AHSGYPVMN SF  +S +L T
Sbjct  1241  DFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLNT  1300

Query  1298  tplnDWLIWHEVGHNAAETPLTVPGATEVANNVLALYMQDRYLGKMNRVADDITVAPEYL  1357
              PLN WL+WHEVGHN+AE+P+ V GATEV NN+LALYMQDR  GKM+RV +DI  A +++
Sbjct  1301  MPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFDFV  1360

Query  1358  EESNNQAWARGGAGDRLLMYAQLKEWAEKNFDIKKWYPDGNLPAFYSDREGMKGWNLFQL  1417
             +  + +AW+ GGAG+RL+M+AQLKEWAE +FDI+ WY D +LP+FY +  G+KGWNLF+L
Sbjct  1361  NAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYND-KLPGFYIEESGIKGWNLFKL  1419

Query  1418  MHRKARGDEVGDKTFGGKNYCAESNGNAADTLMLCASWVAQTDLSAFFKKWNPGANAYQL  1477
             MHR  R ++ ++    G N C  S    +D LMLCAS  AQTDLS FFK WNPG++A+  
Sbjct  1420  MHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKAFLY  1479

Query  1478  PGATEMSFEGGVSQSAYNTLASLKLPKPEQGPETINKVTE  1517
             P+  +  +EGG++ S+ + + SLKL  P++ P +IN VT+
Sbjct  1480  PDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQ  1519

62) ECSF_2797 in NC_013654


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1132 bits (4291),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 708/1483 (48%), Positives = 1044/1483 (71%), Gaps = 83/1483 (5%)

Query  94    LTLGGSQRVTGAT-CNGESSDGFTFTPGKDVTCVAGNTTIATFNTQSEAARSLRAVEKVS  152
             +TL+G+ +  ++  CN++ +  F ++   +V C     +IATF +  +A ++ R  +   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  153   FSLEDAQELAASDNKKSNAVSLVTSSNSCPADTEQVCLTFSSVIESKRFDSLYKQ-IDLA  211
             +SL  A+E   S  ++ N   L+ +  +  +D  ++ L F S +++  F++  ++ +DL+
Sbjct  120   LSLISADEYRDSPVRQENLQILMKNMATIHGD--KISLVFRSTLDALTFENYLRHNLDLP  177

Query  212   PEEFKKLVNEEVENNAATDKApsthtssvvpvttpgtKPDLNASFVSANAEQFYQYQPTE  271
              ++F   + E + N+   DK PSTH +++ P  TPGT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTD  237

Query  272   IILSEGRLVDSMGNGVVGVNYYTSSGRGVTG--------ENGKFNFSWGETISFGIDTFE  323
             +I S GRL+DS G  + GV+Y++++ RG+TG        ++G F+FSWG+ ISF+IDTFE
Sbjct  238   VIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFE  297

Query  324   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSQAGKNDEREVPDVVRQVFAEYPNVINE  383
             LGS R+NK+ + ++ELG +  G N + LIHRY+  + +    +PD V Q+F+ YPNVINE
Sbjct  298   LGSTRANKTDFYISELGKDNEGKNAEALIHRYASID-DSKLIIPDKVTQIFSLYPNVINE  356

Query  384   IINLSLSNGE---ALSEGDQNFPRTNEFLEQLKSGQAKEIDTAICN----SLGGCNSQRW  436
             +I+LSL+NG+    +++G  ++    EF+ Q+ SG A  ID +I       + +  +++ 
Sbjct  357   VISLSLPNGDIELDIGDGKTQIV-PGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKK-  414

Query  437   FSLTARNVNEGQIQGVINKLWGVDEDY-----KSVTKFHVFHDSTNFYGSTGNARGQAVV  491
                +A + + +QIQ++INKLWG  +       K V +FH+FHDSTNFYGSTG+AR+QA V
Sbjct  415   --KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAV  472

Query  492   NISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSLVEPENVTRDTATFNLPFI  551
             NI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFI
Sbjct  473   NIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFI  532

Query  552   SLGQVGEGKLMVIGNPHYNSILRCPNGYSWNGSVNKDGQCTLNSDPDDMKNFMENVLRYL  611
             SLG++G GKLMV+GN++YNS+L CPNG+SW G+V K+G C+L+SD DDM NF  NV+RYL
Sbjct  533   SLGEIGKGKLMVLGNARYNSVLVCPNGFSWGGTV-KNGTCSLSSDRDDMANFFSNVIRYL  591

Query  612   SNERWLPDAKSSMTVGTNLDTVYFKKAGQVLGNSAPFAFHKDFAGITVKPMTSYGNLNPD  671
             +       + + + VGTN+  VYFK +GQ +G+ A F ++  F+  T + +TS+ +L+ +
Sbjct  592   TG-----STSNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSKQT-QQLTSFHDLDVN  645

Query  672   EVPLLILNGFEYVTQWGSDPYSIPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMS  731
              +PL+I+N+++Y  +  + PY IPL AD + PKL++ DVTDLI Y+N+GGSVL+ME +++
Sbjct  646   TIPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIIN  705

Query  732   NLKEESASSFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQRRATGIWVYERYPAAD  788
                  + S + RLLD+AG++ ++ +SVV ++   + G PDR R +R  GIWV ERY+A +
Sbjct  706   T----NNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVE  761

Query  789   GAQP-----PYTIDPNTGEVTWKYQQDNKPDDKPKLEVASW-QEEVEGKQVTRYAFIDEA  842
             +  +     PY I+++ G + WKY  +N+PDDKPKLEVASW + E  +K +T+YAFIDE+
Sbjct  762   DESSGQQTLPYVINSD-GSIEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDES  820

Query  843   EY------------------TTEESLEAAKAKIFEKF------PGLQECKDSTYHYEINC  878
             +                     + SL  AK K+++ F       +  ECK+S +HYEINC
Sbjct  821   QHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINC  880

Query  879   LERRPGTDVPVTGGMYVPRYTQLNLDADTAKAMVQAADLGTNIQRLYQHELYFRTKGSKG  938
             LE RPG  +P+TGG+YVPRYT+++L+   A+AMV+AA+LGTNI+ LYQHE YFRTKG  G
Sbjct  881   LEYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSG  940

Query  939   ERLNSVDLERLYQNMSVWLWNDTKYRYEEGKEDELGFKTFTEFLNCYANDAYAGGTKCSA  998
              RLNSVDL+R+YQNMSVWLWND  YRY++ + DELGFK FT++LNCY+++  +G T C+ 
Sbjct  941   ARLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPE  1000

Query  999   DLKKSLVDNNMIYGDGSSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPG  1057
             +LK  L +  MIY++ S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IKVDV KYPG
Sbjct  1001  ELKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPG  1060

Query  1058  SVSAKGESVTENISLYSNPTKWFAGNMQSTGLWAPAQQDVTIKss-asvpvtvtvaLADD  1116
              V++++ +    + + +N + WFAGN Q+TG WA A+Q  ++  S  + PVT+T+ALADD
Sbjct  1061  EVTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADD  1120

Query  1117  LTGREKHEVALNRPPRVTKTYTLEANGE--VTFKVPYGGLIYIKGDSKDDVSANFTFTGV  1174
             LTGREKHE++L+RPPR++K++ + +++    TF VPYGGLIY +G++ ++V  ++TF+G 
Sbjct  1121  LTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNSQQV--KLTFSGT  1178

Query  1175  VKAPFYKDGEWKNDLDSPAPLGELESASFVYTTPKKNLEASNFTGGVAEFAKDLDTFASS  1234
             + AP+Y DG W+N L S AP+GE+ S +F++T+PK NL+A  + GG+ +FAKDLD F++ 
Sbjct  1179  IDAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSAD  1238

Query  1235  MNDFYGRNETS--GNHRMFTYEALTGHKHRFANDVQISIGDAHSGYPVMnssfstnsstl  1292
             +NDFY+R+E +  +++R  T  ++  ++H+F NDV IS+G AHSGYPVMN SF T+S +L
Sbjct  1239  LNDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSL  1298

Query  1293  pttplnDWLIWHEVGHNAAETPLNVPGATEVANNVLALYMQDRYLGKMNRVADDITVAPE  1352
              T PLN WL+WHEVGHN+AE+P+NV GATEV NN+LALYMQDR  GKM+RV +DI  A +
Sbjct  1299  NTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFD  1358

Query  1353  YLDESNGQAWARGGAGDRLLMYAQLKEWAEKNFDIKKWYPEGSLPAFYSEREGMKGWNLF  1412
             +++  +G+AW+ GGAG+RL+M+AQLKEWAE +FDI+ WY +  LP+FY E  G+KGWNLF
Sbjct  1359  FVNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYND-KLPGFYIEESGIKGWNLF  1417

Query  1413  QLMHRKARGDDVGNSTFGGKNYCAESNGNAADTLMLCASWVAQTDLSEFFKKWNPGASAY  1472
             +LMHR  R ++ ++    G N C  S    +D LMLCAS  AQTDLSEFFK WNPG+ A+
Sbjct  1418  KLMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKAF  1477

Query  1473  QLPGATEMSFQGGVSSSAYSTLASLNLPKPEKGPETINKVTEH  1515
               P+  +  ++GG+++S+   + SL+L  P+K P +IN VT+H
Sbjct  1478  LYPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQH  1520

63) ECP_3050 in NC_008253


> AF325734|28|G28|13377567|AAK20802.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|33361..37923|acfD|-|accessory 
colonization 
factor AcfD
Length=1520

 Score = 1127 bits (4273),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 708/1482 (48%), Positives = 1038/1482 (71%), Gaps = 82/1482 (5%)

Query  94    LTLGGSQRITGAT-CNGESSDGFTFTPGDKVTCVAGNNTTIATFDTQSEAARSLRAVEKV  152
             +TL+G+ ++ ++  CN++ +  F ++  D+V C   N  +IATF +  +A ++ R  +  
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTI-NGRSIATFTAPFDANKNGRNTDSE  118

Query  153   SFSLEDAQELAASDDKKSNAVSLVTSSNSCPADTEQVCLTFSSVIESKRFDSLYKQ-IDL  211
              +SL  A+E   S  ++ N   L+ +  +  +D  ++ L F S +++  F++  ++ +DL
Sbjct  119   VLSLISADEYRDSPVRQENLQILMKNMATIHGD--KISLVFRSTLDALTFENYLRHNLDL  176

Query  212   APEEFKKLVNEEVENNAATDKApsthtspvvpvttpgtkpDLNASFVSANAEQFYQYQPT  271
             + ++F   + E + N+   DK PSTH + + P  TPGT ++LN++FVSANAE+   Y PT
Sbjct  177   PKDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPT  236

Query  272   EIILSEGRLVDSMGNGVVGVNYYTSSGRGVTG--------ENGKFNFSWGETISFGIDTF  323
             ++I S GRL+DS G  + GV+Y++++ RG+TG        ++G F+FSWG+ ISF+IDTF
Sbjct  237   DVIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTF  296

Query  324   ELGSVRGNKSTIALTELGDEVRGANIDQLIHRYSQAGKNDEREVPDVVRKVFAEYPNVIN  383
             ELGS R+NK+ + ++ELG +  G N + LIHRY+  + +    +PD V ++F+ YPNVIN
Sbjct  297   ELGSTRANKTDFYISELGKDNEGKNAEALIHRYASID-DSKLIIPDKVTQIFSLYPNVIN  355

Query  384   EIINLSLSNGE-ALSEGDQTFERT-NEFLEQFESGQAKEIDTAICD----SLGGCNSQRW  437
             E+I+LSL+NG+  L  GD   +    EF+ QF+SG A  ID +I       + +  +++ 
Sbjct  356   EVISLSLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKK-  414

Query  438   FSLTARNVNDGQIQGVINKLWGVDTNY-----KSVSKFHVFHDSTNFYGSTGNARGQAVV  492
                +A + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA V
Sbjct  415   --KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAV  472

Query  493   NISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSLVEPENVTRDTATFNLPFI  552
             NI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFI
Sbjct  473   NIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFI  532

Query  553   SLGQVGEGKLMVIGNPHYNSILRCPNGYSWEGGVDKNGQCTRNSDSNDMKHFMQNVLRYL  612
             SLG++G GKLMV+GN++YNS+L CPNG+SW G V KNG C+ +SD +DM +F  NV+RYL
Sbjct  533   SLGEIGKGKLMVLGNARYNSVLVCPNGFSWGGTV-KNGTCSLSSDRDDMANFFSNVIRYL  591

Query  613   SDDKWTPDAKASMTVGTNLDTVYFKRHGQVTGNSAEFGFHPDFAGISVEHLSSYGDLDPQ  672
                  T  +   + VGTN+  VYFK  GQ  G+ A+F +++ F+    ++L+S+ DLD +
Sbjct  592   -----TGSTSNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSK-QTQQLTSFHDLDVN  645

Query  673   EMPLLILNGFEYVTQVGNDPYAIPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMS  732
              +PL+I+N+++Y  +  N PY IPL AD + PKL++ DVTDLI Y+N+GGSVL+ME +++
Sbjct  646   TIPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIIN  705

Query  733   NLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPNRVRQQRATGIWVYERYPAVD  789
                  + S + RLLD+AG++ ++ +SVV ++   + G P+R R QR  GIWV ERY+AV+
Sbjct  706   T----NNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVE  761

Query  790   G------ALPYTIDSKTGEVKWKYQVENKPDDKPKLEVASWLE-DVDGKQETRYAFIDEA  842
             +      +LPY I+S  G + WKY VEN+PDDKPKLEVASW+E + ++K  T+YAFIDE+
Sbjct  762   DESSGQQTLPYVINSD-GSIEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDES  820

Query  843   DH---------------KTE---DSLKAAKAKIFEKF------PGLKECKDPTYHYEVNC  878
             +H               K E    SL  AK K+++ F       +  ECK++ +HYE+NC
Sbjct  821   QHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINC  880

Query  879   LEYRPGTGVPVTGGMYVPQYTQLSLNADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKG  938
             LEYRPG ++P+TGG+YVP+YT++ L    A+AMV+AA+LGTNI+ LYQHE YFRT+G+ G
Sbjct  881   LEYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSG  940

Query  939   ERLSSVDLERLYQNMSVWLWNKIEYRYENDKDDELGFKTFTEFLNCYANDAYTGGTQCSD  998
              RL+SVDL+R+YQNMSVWLWN ++YRY++ + DELGFK FT++LNCY+++   G T C++
Sbjct  941   ARLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPE  1000

Query  999   ELKKSLVDNNMIYGEKSVNKAGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPG  1058
             ELK  L +  MIY+EKS + AG M+PSYPLNYMEKPLTRLMLGRS WDL+IKVDV KYPG
Sbjct  1001  ELKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPG  1060

Query  1059  AVSAEGEKVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIEstasvavtvtval-add  1117
              V++ +     T+ + +N + WFAGN Q+TG WA A++  ++  ++  +        ADD
Sbjct  1061  EVTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADD  1120

Query  1118  ltGREKHEVALNRPPKVTKTYELKANGE--VKFTVPYGGLIYIKGNSPQNESAEFTFTGV  1175
             LTGREKHE++L+RPP+++K++ + +++     FTVPYGGLIY +G ++Q+    +TF+G 
Sbjct  1121  LTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNSQQ--VKLTFSGT  1178

Query  1176  VKAPFYKDGAWKNALNSPAPLGELESDAFVYTTPKKNLEASNYKGGQEQFAEELDTFASS  1235
             + AP+Y DG W+N+L S AP+GE+ SD+F++T+PK NL+A  Y GG EQFA +LD F++ 
Sbjct  1179  IDAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSAD  1238

Query  1236  MNDFYGRND--EDGKHRMFTYKNLTGHKHRFTNDVQISIGDAHSGYPVMNSSFstnsttl  1293
             +NDFY+R++  +++K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +L
Sbjct  1239  LNDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSL  1298

Query  1294  pttplnDWLIWHEAGHNAAETPLTVPGATEVANNVLALYMQDRYLGKMNRVADDITVAPE  1353
              T PLN WL+WHE GHN+AE+P+ V GATEV NN+LALYMQDR  GKM+RV +DI  A +
Sbjct  1299  NTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFD  1358

Query  1354  YLEESNNQAWARGGAGDRLLMYAQLKEWAEKNFDITKWYPEGNLPKFYSEREGMKGWNLF  1413
             +++  + +AW+ GGAG+RL+M+AQLKEWAE +FDI  WY + +LP FY E  G+KGWNLF
Sbjct  1359  FVNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYND-KLPGFYIEESGIKGWNLF  1417

Query  1414  QLMHRKARGDEVGKTKFGERNYCAESNGNAADTLMLCASWVAQTDLSAFFKKWNPGANAY  1473
             +LMHR  R ++ ++ +    N C  S    +D LMLCAS  AQTDLS FFK WNPG++A+
Sbjct  1418  KLMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKAF  1477

Query  1474  QLPGASEMNFEGGVSQSAYETLAALNLPKPQQGPETINKVTE  1515
               P+ ++  +EGG++ S+ + + +L+L  PQ+ P +IN VT+
Sbjct  1478  LYPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQ  1519