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Homologs of lpfC gene of NC_004337_P2

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) lpfC
( NP_839216.1 )

long polar fimbriae

NC_004741
(Shigella flexneri 2457T)

0.0

100

2) lpfC
( NP_709462.1 )

long polar fimbriae

NC_004337
(Shigella flexneri 301)

0.0

100

3) SFxv_4059
( YP_005729323.1 )

putative long polar fimbriae

NC_017328
(Shigella flexneri 2002017)

0.0

4) lpfC
( YP_691095.1 )

long polar fimbriae

NC_008258
(Shigella flexneri 8401)

0.0

5) lpfC
( YP_003236861.1 )

putative outer membrane usher protein

NC_013364
(Escherichia coli 11128)

0.0

6) O3M_25110
( YP_006772626.1 )

outer membrane usher protein

NC_018650
(Escherichia coli 2009EL-2050)

0.0

7) O3O_00150
( YP_006786817.1 )

outer membrane usher protein

NC_018661
(Escherichia coli 2009EL-2071)

0.0

8) O3K_25190
( YP_006781684.1 )

putative outer membrane usher protein

NC_018658
(Escherichia coli 2011C-3493)

0.0

9) lpfC
( YP_002405119.1 )

fimbrial usher

NC_011748
(Escherichia coli 55989)

0.0

10) APECO78_22520
( YP_007383665.1 )

outer membrane usher protein

NC_020163
(Escherichia coli APEC O78)

0.0

11) lpfC
( YP_002389211.1 )

putative fimbrial usher

NC_011741
(Escherichia coli IAI1)

0.0

12) EKO11_4619
( YP_005280234.1 )

fimbrial biogenesis outer membrane usher protein

NC_016902
(Escherichia coli KO11FL)

0.0

13) lpfC
( YP_006163078.1 )

putative outer membrane usher protein

NC_017660
(Escherichia coli KO11FL)

0.0

14) LY180_19315
( YP_008566908.1 )

fimbrial protein FimD

NC_022364
(Escherichia coli LY180)

0.0

15) lpfC
( YP_006126605.1 )

putative fimbrial usher protein

NC_017635
(Escherichia coli W)

0.0

16) lpfC
( YP_006175368.1 )

putative outer membrane usher protein

NC_017664
(Escherichia coli W)

0.0

17) ECSE_4016
( YP_002295291.1 )

putative fimbrial usher protein LpfC

NC_011415
(Escherichia coli SE11)

0.0

18) ECO26_4852
( YP_003231750.1 )

outer membrane usher protein

NC_013361
(Escherichia coli 11368)

0.0

19) fimD1
( YP_001465216.1 )

outer membrane usher protein FimD

NC_009801
(Escherichia coli E24377A)

0.0

20) SSON53_22490
( YP_005458988.1 )

fimbrial biogenesis outer membrane usher protein

NC_016822
(Shigella sonnei 53G)

0.0

21) lpfC
( YP_002414891.1 )

putative fimbrial usher

NC_011751
(Escherichia coli UMN026)

0.0

22) lpfC
( YP_006146356.1 )

long polar fimbrial operon protein LpfC

NC_017646
(Escherichia coli CE10)

0.0

23) lpfC
( YP_002410205.1 )

putative fimbrial usher

NC_011750
(Escherichia coli IAI39)

0.0

24) lpfC
( YP_001746056.1 )

long polar fimbrial operon protein LpfC

NC_010498
(Escherichia coli SMS-3-5)

0.0

25) lpfC
( YP_006098365.1 )

fimbrial outer membrane usher protein

NC_017626
(Escherichia coli 042)

0.0

26) Entcl_4427
( YP_003943940.1 )

fimbrial biogenesis outer membrane usher protein

NC_014618
(Enterobacter cloacae SCF1)

0.0

27) A464_3923
( YP_008324517.1 )

type 1 fimbriae anchoring protein FimD

NC_021870
(Salmonella bongori N268-08)

0.0

28) sbdC
( YP_004732211.1 )

fimbrial membrane usher protein

NC_015761
(Salmonella bongori NCTC 12419)

0.0

29) ECH74115_5161
( YP_002273255.1 )

fimbrial usher protein

NC_011353
(Escherichia coli EC4115)

0.0

30) Z5222
( NP_290363.1 )

fimbrial usher

NC_002655
(Escherichia coli EDL933)

0.0

31) ECs4667
( NP_312694.1 )

outer membrane usher protein

NC_002695
(Escherichia coli Sakai)

0.0

32) lpfC
( YP_003080567.1 )

fimbrial usher

NC_013008
(Escherichia coli TW14359)

0.0

33) CDCO157_4403
( YP_006315265.1 )

putative outer membrane usher protein

NC_017906
(Escherichia coli Xuzhou21)

0.0

34) ENC_04120
( YP_007844530.1 )

P pilus assembly protein, porin PapC

NC_021046
(Enterobacter cloacae NCTC 9394)

0.0

35) ECENHK_00150
( YP_006576551.1 )

fimbrial membrane usher protein

NC_018405
(Enterobacter cloacae ENHKU01)

0.0

36) Spro_2874
( YP_001479103.1 )

fimbrial biogenesis outer membrane usher protein

NC_009832
(Serratia proteamaculans 568)

1e-147

37) Y11_30771
( YP_006006576.1 )

type 1 fimbriae anchoring protein FimD

NC_017564
(Yersinia enterocolitica Y11)

2e-144

38) A225_3439
( YP_006499142.1 )

type 1 fimbriae anchoring protein FimD

NC_018106
(Klebsiella oxytoca E718)

1e-142

39) KOX_22805
( YP_005020518.1 )

outer membrane usher protein LpfC

NC_016612
(Klebsiella oxytoca KCTC 1686)

1e-142

40) YE105_C3834
( YP_004300031.1 )

Fimbrial biogenesis outer membrane usher protein

NC_015224
(Yersinia enterocolitica 105.5R(r))

7e-141

41) ECENHK_06965
( YP_006577900.1 )

outer membrane usher protein lpfC

NC_018405
(Enterobacter cloacae ENHKU01)

2e-140

42) ESA_01974
( YP_001438063.1 )

hypothetical protein

NC_009778
(Cronobacter sakazakii ATCC BAA-894)

1e-139

43) D781_3602
( YP_007345991.1 )

P pilus assembly protein, porin PapC

NC_020064
(Serratia marcescens FGI94)

3e-139

44) M621_20495
( YP_008160861.1 )

fimbrial outer membrane usher protein SthC

NC_021659
(Serratia plymuthica S13)

5e-139

45) SerAS9_4041
( YP_004507402.1 )

fimbrial biogenesis outer membrane usher protein

NC_015567
(Serratia plymuthica AS9)

1e-138

46) SerAS12_4042
( YP_004502450.1 )

fimbrial biogenesis outer membrane usher protein

NC_015566
(Serratia sp. AS12)

1e-138

47) SerAS13_4042
( YP_006026864.1 )

fimbrial biogenesis outer membrane usher protein

NC_017573
(Serratia sp. AS13)

1e-138

48) CFSAN001992_05635
( YP_007470885.1 )

outer membrane usher protein SfmD

NC_020307
(Salmonella enterica CFSAN001992)

5e-138

49) SeSA_A1271
( YP_002114200.1 )

outer membrane usher protein SfmD

NC_011094
(Salmonella enterica CVM19633)

5e-138

50) Kvar_2589
( YP_003439511.1 )

fimbrial biogenesis outer membrane usher protein

NC_013850
(Klebsiella variicola At-22)

4e-136

51) lpfC
( YP_002238465.1 )

outer membrane usher protein LpfC

NC_011283
(Klebsiella pneumoniae 342)

8e-136

52) lpfC
( YP_003365379.1 )

fimbrial usher protein

NC_013716
(Citrobacter rodentium ICC168)

2e-135

53) ECENHK_08570
( YP_006578215.1 )

outer membrane usher protein SfmD

NC_018405
(Enterobacter cloacae ENHKU01)

4e-134

54) fimD1
( YP_006343210.1 )

type 1 fimbriae anchoring protein FimD

NC_017933
(Cronobacter sakazakii ES15)

3e-132

55) YE1112
( YP_001005441.1 )

outer membrane usher protein

NC_008800
(Yersinia enterocolitica 8081)

9e-129

56) A79E_4489
( YP_006638248.1 )

type 1 fimbriae anchoring protein FimD

NC_018522
(Klebsiella pneumoniae 1084)

1e-127

57) KP1_0600
( YP_002917527.1 )

long polar fimbrial outer membrane usher protein

NC_012731
(Klebsiella pneumoniae NTUH-K2044)

9e-128

58) A464_4502
( YP_008325094.1 )

type 1 fimbriae anchoring protein FimD

NC_021870
(Salmonella bongori N268-08)

3e-127

59) SARI_01797
( YP_001570825.1 )

hypothetical protein

NC_010067
(Salmonella enterica RSK2980)

5e-127

60) fimD2
( YP_006108861.1 )

outer membrane usher protein FimD

NC_017631
(Escherichia coli ABU 83972)

1e-103

• Sequence Alignments

1) lpfC in NC_004741


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score = 1328 bits (5039),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 840/840 (100%), Positives = 840/840 (100%), Gaps = 0/840 (0%)

Query  1    MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEINHQSGVDIRQFNRANLMPPGVYSV  60
            MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEINHQSGVDIRQFNRANLMPPGVYSV
Sbjct  1    MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEINHQSGVDIRQFNRANLMPPGVYSV  60

Query  61   DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP  120
            DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP
Sbjct  61   DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP  120

Query  121  APRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR  180
            APRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR
Sbjct  121  APRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR  180

Query  181  SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM  240
            SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM
Sbjct  181  SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM  240

Query  241  IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ  300
            IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ
Sbjct  241  IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ  300

Query  301  SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGE  360
            SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGE
Sbjct  301  SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGE  360

Query  361  LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA  420
            LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA
Sbjct  361  LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA  420

Query  421  RANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE  480
            RANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE
Sbjct  421  RANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE  480

Query  481  TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS  540
            TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS
Sbjct  481  TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS  540

Query  541  YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG  600
            YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG
Sbjct  541  YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG  600

Query  601  TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL  660
            TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL
Sbjct  601  TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL  660

Query  661  AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD  720
            AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD
Sbjct  661  AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD  720

Query  721  NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA  780
            NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA
Sbjct  721  NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA  780

Query  781  SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVTCH  840
            SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVTCH
Sbjct  781  SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVTCH  840

2) lpfC in NC_004337


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score = 1328 bits (5039),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 840/840 (100%), Positives = 840/840 (100%), Gaps = 0/840 (0%)

Query  1    MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEINHQSGVDIRQFNRANLMPPGVYSV  60
            MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEINHQSGVDIRQFNRANLMPPGVYSV
Sbjct  1    MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEINHQSGVDIRQFNRANLMPPGVYSV  60

Query  61   DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP  120
            DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP
Sbjct  61   DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP  120

Query  121  APRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR  180
            APRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR
Sbjct  121  APRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR  180

Query  181  SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM  240
            SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM
Sbjct  181  SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM  240

Query  241  IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ  300
            IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ
Sbjct  241  IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ  300

Query  301  SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGE  360
            SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGE
Sbjct  301  SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGE  360

Query  361  LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA  420
            LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA
Sbjct  361  LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA  420

Query  421  RANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE  480
            RANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE
Sbjct  421  RANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE  480

Query  481  TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS  540
            TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS
Sbjct  481  TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS  540

Query  541  YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG  600
            YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG
Sbjct  541  YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG  600

Query  601  TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL  660
            TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL
Sbjct  601  TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL  660

Query  661  AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD  720
            AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD
Sbjct  661  AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD  720

Query  721  NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA  780
            NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA
Sbjct  721  NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA  780

Query  781  SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVTCH  840
            SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVTCH
Sbjct  781  SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVTCH  840

3) SFxv_4059 in NC_017328


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score = 1325 bits (5028),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 839/840 (99%), Positives = 839/840 (99%), Gaps = 0/840 (0%)

Query  1    MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEINHQSGVDIRQFNRANLMPPGVYSV  60
            MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEINHQSGVDIRQFNRANLMPPGVYSV
Sbjct  1    MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEINHQSGVDIRQFNRANLMPPGVYSV  60

Query  61   DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP  120
            DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP
Sbjct  61   DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP  120

Query  121  APRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR  180
            APRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR
Sbjct  121  APRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR  180

Query  181  SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM  240
            SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM
Sbjct  181  SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM  240

Query  241  IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ  300
            IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ
Sbjct  241  IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ  300

Query  301  SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGE  360
            SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGE
Sbjct  301  SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGE  360

Query  361  LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA  420
            LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA
Sbjct  361  LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA  420

Query  421  RANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE  480
            RANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE
Sbjct  421  RANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE  480

Query  481  TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS  540
            TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS
Sbjct  481  TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS  540

Query  541  YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG  600
            YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG
Sbjct  541  YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG  600

Query  601  TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL  660
            TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL
Sbjct  601  TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL  660

Query  661  AHSEGVTLSQELGETIALVKAPGAARLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD  720
            AHSEGVTLSQELGETIALVKAPGAA LEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD
Sbjct  661  AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD  720

Query  721  NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA  780
            NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA
Sbjct  721  NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA  780

Query  781  SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVTCH  840
            SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVTCH
Sbjct  781  SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVTCH  840

4) lpfC in NC_008258


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score = 1320 bits (5010),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 837/839 (99%), Positives = 838/839 (99%), Gaps = 0/839 (0%)

Query  1    MTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEINHQSGVDIRQFNRANLMPPGVYSVD  60
            MTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEINHQSGVDIRQFNRANLMPPGVYSVD
Sbjct  2    MTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEINHQSGVDIRQFNRANLMPPGVYSVD  61

Query  61   IFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDPA  120
            IFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDPA
Sbjct  62   IFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDPA  121

Query  121  PRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLRS  180
            PRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLRS
Sbjct  122  PRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLRS  181

Query  181  DYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIMI  240
            DYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIMI
Sbjct  182  DYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIMI  241

Query  241  GDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQS  300
            GDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQS
Sbjct  242  GDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQS  301

Query  301  AVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYALLAILKREGLTDVDVSVGEL  360
            AVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYA LAILKREGLTDVDVSVGEL
Sbjct  302  AVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGEL  361

Query  361  RDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHAR  420
            RDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHAR
Sbjct  362  RDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHAR  421

Query  421  ANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWET  480
            ANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWET
Sbjct  422  ANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWET  481

Query  481  GNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWSY  540
            GNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWSY
Sbjct  482  GNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWSY  541

Query  541  SNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSGT  600
            SNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSGT
Sbjct  542  SNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSGT  601

Query  601  ALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGILA  660
            ALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGILA
Sbjct  602  ALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGILA  661

Query  661  HSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISDN  720
            HSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISDN
Sbjct  662  HSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISDN  721

Query  721  YFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDAS  780
            YFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDAS
Sbjct  722  YFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDAS  781

Query  781  LADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSLSTPESESGLIEQGVTCH  839
            LADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYS+STPESESGLIEQGVTCH
Sbjct  782  LADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVTCH  840

5) lpfC in NC_011748


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score = 1317 bits (4997),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 835/840 (99%), Positives = 837/840 (99%), Gaps = 0/840 (0%)

Query  1    MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEIDHQSGVDIRQFNRANLMPPGVYSV  60
            MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEI+HQSGVDIRQFNRANLMPPGVYSV
Sbjct  1    MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEINHQSGVDIRQFNRANLMPPGVYSV  60

Query  61   DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP  120
            DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP
Sbjct  61   DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP  120

Query  121  APRIEGSSWQFDSDKLQLNISIPQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR  180
            APRIEGSSWQFDSDKLQLNISI QIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR
Sbjct  121  APRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR  180

Query  181  SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM  240
            SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM
Sbjct  181  SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM  240

Query  241  IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ  300
            IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ
Sbjct  241  IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ  300

Query  301  SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGQTDVDVSVGE  360
            SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREG TDVDVSVGE
Sbjct  301  SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGE  360

Query  361  LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA  420
            LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA
Sbjct  361  LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA  420

Query  421  RANFSHDDTETGQSYRFLYSKRFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE  480
            RANFSHDDTETGQSYRFLYSK FDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE
Sbjct  421  RANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE  480

Query  481  TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS  540
            TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS
Sbjct  481  TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS  540

Query  541  YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG  600
            YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG
Sbjct  541  YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG  600

Query  601  TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL  660
            TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL
Sbjct  601  TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL  660

Query  661  AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD  720
            AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD
Sbjct  661  AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD  720

Query  721  NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA  780
            NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA
Sbjct  721  NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA  780

Query  781  SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSLSTPESESGLIEQGVTCH  840
            SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYS+STPESESGLIEQGVTCH
Sbjct  781  SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVTCH  840

6) APECO78_22520 in NC_020163


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score = 1317 bits (4997),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 835/840 (99%), Positives = 837/840 (99%), Gaps = 0/840 (0%)

Query  1    MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEIDHQSGVDIRQFNRANLMPPGVYSV  60
            MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEI+HQSGVDIRQFNRANLMPPGVYSV
Sbjct  1    MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEINHQSGVDIRQFNRANLMPPGVYSV  60

Query  61   DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP  120
            DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP
Sbjct  61   DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP  120

Query  121  APRIEGSSWQFDSDKLQLNISIPQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR  180
            APRIEGSSWQFDSDKLQLNISI QIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR
Sbjct  121  APRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR  180

Query  181  SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM  240
            SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM
Sbjct  181  SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM  240

Query  241  IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ  300
            IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ
Sbjct  241  IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ  300

Query  301  SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGQTDVDVSVGE  360
            SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREG TDVDVSVGE
Sbjct  301  SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGE  360

Query  361  LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA  420
            LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA
Sbjct  361  LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA  420

Query  421  RANFSHDDTETGQSYRFLYSKRFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE  480
            RANFSHDDTETGQSYRFLYSK FDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE
Sbjct  421  RANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE  480

Query  481  TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS  540
            TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS
Sbjct  481  TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS  540

Query  541  YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG  600
            YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG
Sbjct  541  YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG  600

Query  601  TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL  660
            TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL
Sbjct  601  TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL  660

Query  661  AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD  720
            AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD
Sbjct  661  AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD  720

Query  721  NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA  780
            NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA
Sbjct  721  NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA  780

Query  781  SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSLSTPESESGLIEQGVTCH  840
            SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYS+STPESESGLIEQGVTCH
Sbjct  781  SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVTCH  840

7) lpfC in NC_011741


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score = 1317 bits (4997),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 835/840 (99%), Positives = 837/840 (99%), Gaps = 0/840 (0%)

Query  1    MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEIDHQSGVDIRQFNRANLMPPGVYSV  60
            MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEI+HQSGVDIRQFNRANLMPPGVYSV
Sbjct  1    MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEINHQSGVDIRQFNRANLMPPGVYSV  60

Query  61   DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP  120
            DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP
Sbjct  61   DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP  120

Query  121  APRIEGSSWQFDSDKLQLNISIPQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR  180
            APRIEGSSWQFDSDKLQLNISI QIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR
Sbjct  121  APRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR  180

Query  181  SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM  240
            SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM
Sbjct  181  SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM  240

Query  241  IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ  300
            IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ
Sbjct  241  IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ  300

Query  301  SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGQTDVDVSVGE  360
            SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREG TDVDVSVGE
Sbjct  301  SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGE  360

Query  361  LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA  420
            LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA
Sbjct  361  LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA  420

Query  421  RANFSHDDTETGQSYRFLYSKRFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE  480
            RANFSHDDTETGQSYRFLYSK FDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE
Sbjct  421  RANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE  480

Query  481  TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS  540
            TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS
Sbjct  481  TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS  540

Query  541  YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG  600
            YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG
Sbjct  541  YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG  600

Query  601  TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL  660
            TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL
Sbjct  601  TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL  660

Query  661  AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD  720
            AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD
Sbjct  661  AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD  720

Query  721  NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA  780
            NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA
Sbjct  721  NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA  780

Query  781  SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSLSTPESESGLIEQGVTCH  840
            SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYS+STPESESGLIEQGVTCH
Sbjct  781  SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVTCH  840

8) lpfC in NC_017660


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score = 1317 bits (4997),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 835/840 (99%), Positives = 837/840 (99%), Gaps = 0/840 (0%)

Query  1    MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEIDHQSGVDIRQFNRANLMPPGVYSV  60
            MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEI+HQSGVDIRQFNRANLMPPGVYSV
Sbjct  1    MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEINHQSGVDIRQFNRANLMPPGVYSV  60

Query  61   DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP  120
            DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP
Sbjct  61   DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP  120

Query  121  APRIEGSSWQFDSDKLQLNISIPQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR  180
            APRIEGSSWQFDSDKLQLNISI QIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR
Sbjct  121  APRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR  180

Query  181  SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM  240
            SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM
Sbjct  181  SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM  240

Query  241  IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ  300
            IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ
Sbjct  241  IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ  300

Query  301  SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGQTDVDVSVGE  360
            SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREG TDVDVSVGE
Sbjct  301  SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGE  360

Query  361  LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA  420
            LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA
Sbjct  361  LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA  420

Query  421  RANFSHDDTETGQSYRFLYSKRFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE  480
            RANFSHDDTETGQSYRFLYSK FDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE
Sbjct  421  RANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE  480

Query  481  TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS  540
            TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS
Sbjct  481  TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS  540

Query  541  YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG  600
            YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG
Sbjct  541  YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG  600

Query  601  TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL  660
            TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL
Sbjct  601  TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL  660

Query  661  AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD  720
            AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD
Sbjct  661  AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD  720

Query  721  NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA  780
            NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA
Sbjct  721  NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA  780

Query  781  SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSLSTPESESGLIEQGVTCH  840
            SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYS+STPESESGLIEQGVTCH
Sbjct  781  SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVTCH  840

9) EKO11_4619 in NC_016902


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score = 1317 bits (4997),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 835/840 (99%), Positives = 837/840 (99%), Gaps = 0/840 (0%)

Query  1    MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEIDHQSGVDIRQFNRANLMPPGVYSV  60
            MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEI+HQSGVDIRQFNRANLMPPGVYSV
Sbjct  1    MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEINHQSGVDIRQFNRANLMPPGVYSV  60

Query  61   DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP  120
            DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP
Sbjct  61   DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP  120

Query  121  APRIEGSSWQFDSDKLQLNISIPQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR  180
            APRIEGSSWQFDSDKLQLNISI QIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR
Sbjct  121  APRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR  180

Query  181  SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM  240
            SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM
Sbjct  181  SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM  240

Query  241  IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ  300
            IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ
Sbjct  241  IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ  300

Query  301  SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGQTDVDVSVGE  360
            SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREG TDVDVSVGE
Sbjct  301  SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGE  360

Query  361  LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA  420
            LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA
Sbjct  361  LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA  420

Query  421  RANFSHDDTETGQSYRFLYSKRFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE  480
            RANFSHDDTETGQSYRFLYSK FDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE
Sbjct  421  RANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE  480

Query  481  TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS  540
            TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS
Sbjct  481  TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS  540

Query  541  YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG  600
            YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG
Sbjct  541  YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG  600

Query  601  TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL  660
            TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL
Sbjct  601  TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL  660

Query  661  AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD  720
            AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD
Sbjct  661  AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD  720

Query  721  NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA  780
            NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA
Sbjct  721  NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA  780

Query  781  SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSLSTPESESGLIEQGVTCH  840
            SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYS+STPESESGLIEQGVTCH
Sbjct  781  SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVTCH  840

10) LY180_19315 in NC_022364


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score = 1317 bits (4997),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 835/840 (99%), Positives = 837/840 (99%), Gaps = 0/840 (0%)

Query  1    MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEIDHQSGVDIRQFNRANLMPPGVYSV  60
            MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEI+HQSGVDIRQFNRANLMPPGVYSV
Sbjct  1    MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEINHQSGVDIRQFNRANLMPPGVYSV  60

Query  61   DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP  120
            DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP
Sbjct  61   DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP  120

Query  121  APRIEGSSWQFDSDKLQLNISIPQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR  180
            APRIEGSSWQFDSDKLQLNISI QIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR
Sbjct  121  APRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR  180

Query  181  SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM  240
            SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM
Sbjct  181  SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM  240

Query  241  IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ  300
            IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ
Sbjct  241  IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ  300

Query  301  SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGQTDVDVSVGE  360
            SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREG TDVDVSVGE
Sbjct  301  SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGE  360

Query  361  LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA  420
            LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA
Sbjct  361  LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA  420

Query  421  RANFSHDDTETGQSYRFLYSKRFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE  480
            RANFSHDDTETGQSYRFLYSK FDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE
Sbjct  421  RANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE  480

Query  481  TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS  540
            TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS
Sbjct  481  TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS  540

Query  541  YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG  600
            YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG
Sbjct  541  YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG  600

Query  601  TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL  660
            TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL
Sbjct  601  TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL  660

Query  661  AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD  720
            AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD
Sbjct  661  AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD  720

Query  721  NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA  780
            NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA
Sbjct  721  NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA  780

Query  781  SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSLSTPESESGLIEQGVTCH  840
            SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYS+STPESESGLIEQGVTCH
Sbjct  781  SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVTCH  840

11) O3M_25110 in NC_018650


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score = 1317 bits (4997),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 835/840 (99%), Positives = 837/840 (99%), Gaps = 0/840 (0%)

Query  1    MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEIDHQSGVDIRQFNRANLMPPGVYSV  60
            MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEI+HQSGVDIRQFNRANLMPPGVYSV
Sbjct  1    MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEINHQSGVDIRQFNRANLMPPGVYSV  60

Query  61   DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP  120
            DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP
Sbjct  61   DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP  120

Query  121  APRIEGSSWQFDSDKLQLNISIPQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR  180
            APRIEGSSWQFDSDKLQLNISI QIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR
Sbjct  121  APRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR  180

Query  181  SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM  240
            SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM
Sbjct  181  SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM  240

Query  241  IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ  300
            IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ
Sbjct  241  IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ  300

Query  301  SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGQTDVDVSVGE  360
            SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREG TDVDVSVGE
Sbjct  301  SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGE  360

Query  361  LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA  420
            LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA
Sbjct  361  LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA  420

Query  421  RANFSHDDTETGQSYRFLYSKRFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE  480
            RANFSHDDTETGQSYRFLYSK FDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE
Sbjct  421  RANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE  480

Query  481  TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS  540
            TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS
Sbjct  481  TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS  540

Query  541  YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG  600
            YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG
Sbjct  541  YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG  600

Query  601  TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL  660
            TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL
Sbjct  601  TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL  660

Query  661  AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD  720
            AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD
Sbjct  661  AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD  720

Query  721  NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA  780
            NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA
Sbjct  721  NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA  780

Query  781  SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSLSTPESESGLIEQGVTCH  840
            SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYS+STPESESGLIEQGVTCH
Sbjct  781  SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVTCH  840

12) O3O_00150 in NC_018661


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score = 1317 bits (4997),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 835/840 (99%), Positives = 837/840 (99%), Gaps = 0/840 (0%)

Query  1    MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEIDHQSGVDIRQFNRANLMPPGVYSV  60
            MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEI+HQSGVDIRQFNRANLMPPGVYSV
Sbjct  1    MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEINHQSGVDIRQFNRANLMPPGVYSV  60

Query  61   DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP  120
            DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP
Sbjct  61   DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP  120

Query  121  APRIEGSSWQFDSDKLQLNISIPQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR  180
            APRIEGSSWQFDSDKLQLNISI QIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR
Sbjct  121  APRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR  180

Query  181  SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM  240
            SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM
Sbjct  181  SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM  240

Query  241  IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ  300
            IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ
Sbjct  241  IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ  300

Query  301  SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGQTDVDVSVGE  360
            SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREG TDVDVSVGE
Sbjct  301  SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGE  360

Query  361  LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA  420
            LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA
Sbjct  361  LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA  420

Query  421  RANFSHDDTETGQSYRFLYSKRFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE  480
            RANFSHDDTETGQSYRFLYSK FDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE
Sbjct  421  RANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE  480

Query  481  TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS  540
            TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS
Sbjct  481  TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS  540

Query  541  YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG  600
            YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG
Sbjct  541  YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG  600

Query  601  TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL  660
            TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL
Sbjct  601  TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL  660

Query  661  AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD  720
            AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD
Sbjct  661  AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD  720

Query  721  NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA  780
            NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA
Sbjct  721  NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA  780

Query  781  SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSLSTPESESGLIEQGVTCH  840
            SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYS+STPESESGLIEQGVTCH
Sbjct  781  SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVTCH  840

13) O3K_25190 in NC_018658


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score = 1317 bits (4997),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 835/840 (99%), Positives = 837/840 (99%), Gaps = 0/840 (0%)

Query  1    MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEIDHQSGVDIRQFNRANLMPPGVYSV  60
            MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEI+HQSGVDIRQFNRANLMPPGVYSV
Sbjct  1    MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEINHQSGVDIRQFNRANLMPPGVYSV  60

Query  61   DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP  120
            DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP
Sbjct  61   DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP  120

Query  121  APRIEGSSWQFDSDKLQLNISIPQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR  180
            APRIEGSSWQFDSDKLQLNISI QIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR
Sbjct  121  APRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR  180

Query  181  SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM  240
            SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM
Sbjct  181  SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM  240

Query  241  IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ  300
            IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ
Sbjct  241  IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ  300

Query  301  SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGQTDVDVSVGE  360
            SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREG TDVDVSVGE
Sbjct  301  SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGE  360

Query  361  LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA  420
            LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA
Sbjct  361  LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA  420

Query  421  RANFSHDDTETGQSYRFLYSKRFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE  480
            RANFSHDDTETGQSYRFLYSK FDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE
Sbjct  421  RANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE  480

Query  481  TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS  540
            TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS
Sbjct  481  TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS  540

Query  541  YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG  600
            YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG
Sbjct  541  YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG  600

Query  601  TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL  660
            TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL
Sbjct  601  TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL  660

Query  661  AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD  720
            AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD
Sbjct  661  AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD  720

Query  721  NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA  780
            NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA
Sbjct  721  NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA  780

Query  781  SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSLSTPESESGLIEQGVTCH  840
            SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYS+STPESESGLIEQGVTCH
Sbjct  781  SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVTCH  840

14) lpfC in NC_013364


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score = 1317 bits (4997),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 835/840 (99%), Positives = 837/840 (99%), Gaps = 0/840 (0%)

Query  1    MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEIDHQSGVDIRQFNRANLMPPGVYSV  60
            MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEI+HQSGVDIRQFNRANLMPPGVYSV
Sbjct  1    MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEINHQSGVDIRQFNRANLMPPGVYSV  60

Query  61   DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP  120
            DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP
Sbjct  61   DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP  120

Query  121  APRIEGSSWQFDSDKLQLNISIPQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR  180
            APRIEGSSWQFDSDKLQLNISI QIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR
Sbjct  121  APRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR  180

Query  181  SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM  240
            SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM
Sbjct  181  SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM  240

Query  241  IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ  300
            IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ
Sbjct  241  IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ  300

Query  301  SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGQTDVDVSVGE  360
            SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREG TDVDVSVGE
Sbjct  301  SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGE  360

Query  361  LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA  420
            LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA
Sbjct  361  LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA  420

Query  421  RANFSHDDTETGQSYRFLYSKRFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE  480
            RANFSHDDTETGQSYRFLYSK FDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE
Sbjct  421  RANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE  480

Query  481  TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS  540
            TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS
Sbjct  481  TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS  540

Query  541  YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG  600
            YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG
Sbjct  541  YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG  600

Query  601  TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL  660
            TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL
Sbjct  601  TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL  660

Query  661  AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD  720
            AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD
Sbjct  661  AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD  720

Query  721  NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA  780
            NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA
Sbjct  721  NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA  780

Query  781  SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSLSTPESESGLIEQGVTCH  840
            SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYS+STPESESGLIEQGVTCH
Sbjct  781  SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVTCH  840

15) lpfC in NC_017635


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score = 1317 bits (4997),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 835/840 (99%), Positives = 837/840 (99%), Gaps = 0/840 (0%)

Query  1    MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEIDHQSGVDIRQFNRANLMPPGVYSV  60
            MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEI+HQSGVDIRQFNRANLMPPGVYSV
Sbjct  1    MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEINHQSGVDIRQFNRANLMPPGVYSV  60

Query  61   DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP  120
            DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP
Sbjct  61   DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP  120

Query  121  APRIEGSSWQFDSDKLQLNISIPQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR  180
            APRIEGSSWQFDSDKLQLNISI QIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR
Sbjct  121  APRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR  180

Query  181  SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM  240
            SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM
Sbjct  181  SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM  240

Query  241  IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ  300
            IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ
Sbjct  241  IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ  300

Query  301  SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGQTDVDVSVGE  360
            SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREG TDVDVSVGE
Sbjct  301  SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGE  360

Query  361  LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA  420
            LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA
Sbjct  361  LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA  420

Query  421  RANFSHDDTETGQSYRFLYSKRFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE  480
            RANFSHDDTETGQSYRFLYSK FDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE
Sbjct  421  RANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE  480

Query  481  TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS  540
            TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS
Sbjct  481  TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS  540

Query  541  YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG  600
            YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG
Sbjct  541  YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG  600

Query  601  TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL  660
            TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL
Sbjct  601  TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL  660

Query  661  AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD  720
            AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD
Sbjct  661  AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD  720

Query  721  NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA  780
            NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA
Sbjct  721  NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA  780

Query  781  SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSLSTPESESGLIEQGVTCH  840
            SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYS+STPESESGLIEQGVTCH
Sbjct  781  SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVTCH  840

16) lpfC in NC_017664


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score = 1317 bits (4997),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 835/840 (99%), Positives = 837/840 (99%), Gaps = 0/840 (0%)

Query  1    MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEIDHQSGVDIRQFNRANLMPPGVYSV  60
            MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEI+HQSGVDIRQFNRANLMPPGVYSV
Sbjct  1    MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEINHQSGVDIRQFNRANLMPPGVYSV  60

Query  61   DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP  120
            DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP
Sbjct  61   DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP  120

Query  121  APRIEGSSWQFDSDKLQLNISIPQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR  180
            APRIEGSSWQFDSDKLQLNISI QIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR
Sbjct  121  APRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR  180

Query  181  SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM  240
            SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM
Sbjct  181  SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM  240

Query  241  IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ  300
            IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ
Sbjct  241  IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ  300

Query  301  SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGQTDVDVSVGE  360
            SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREG TDVDVSVGE
Sbjct  301  SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGE  360

Query  361  LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA  420
            LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA
Sbjct  361  LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA  420

Query  421  RANFSHDDTETGQSYRFLYSKRFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE  480
            RANFSHDDTETGQSYRFLYSK FDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE
Sbjct  421  RANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE  480

Query  481  TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS  540
            TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS
Sbjct  481  TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS  540

Query  541  YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG  600
            YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG
Sbjct  541  YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG  600

Query  601  TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL  660
            TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL
Sbjct  601  TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL  660

Query  661  AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD  720
            AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD
Sbjct  661  AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD  720

Query  721  NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA  780
            NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA
Sbjct  721  NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA  780

Query  781  SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSLSTPESESGLIEQGVTCH  840
            SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYS+STPESESGLIEQGVTCH
Sbjct  781  SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVTCH  840

17) ECSE_4016 in NC_011415


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score = 1316 bits (4993),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 834/840 (99%), Positives = 837/840 (99%), Gaps = 0/840 (0%)

Query  1    MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEIDHQSGVDIRQFNRANLMPPGVYSV  60
            MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEI+HQSGVDIRQFNRANLMPPGVYSV
Sbjct  1    MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEINHQSGVDIRQFNRANLMPPGVYSV  60

Query  61   DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP  120
            DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP
Sbjct  61   DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP  120

Query  121  APRIEGSSWQFDSDKLQLNISIPQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR  180
            APRIEGSSWQFDSDKLQLNISI QIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR
Sbjct  121  APRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR  180

Query  181  SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSLSTWIQRDIAALRSQIM  240
            SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNS+STWIQRDIAALRSQIM
Sbjct  181  SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM  240

Query  241  IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ  300
            IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ
Sbjct  241  IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ  300

Query  301  SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGQTDVDVSVGE  360
            SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREG TDVDVSVGE
Sbjct  301  SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGE  360

Query  361  LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA  420
            LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA
Sbjct  361  LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA  420

Query  421  RANFSHDDTETGQSYRFLYSKRFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE  480
            RANFSHDDTETGQSYRFLYSK FDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE
Sbjct  421  RANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE  480

Query  481  TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS  540
            TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS
Sbjct  481  TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS  540

Query  541  YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG  600
            YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG
Sbjct  541  YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG  600

Query  601  TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL  660
            TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL
Sbjct  601  TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL  660

Query  661  AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD  720
            AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD
Sbjct  661  AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD  720

Query  721  NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA  780
            NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA
Sbjct  721  NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA  780

Query  781  SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSLSTPESESGLIEQGVTCH  840
            SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYS+STPESESGLIEQGVTCH
Sbjct  781  SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVTCH  840

18) ECO26_4852 in NC_013361


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score = 1315 bits (4990),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 834/840 (99%), Positives = 837/840 (99%), Gaps = 0/840 (0%)

Query  1    MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEIDHQSGVDIRQFNRANLMPPGVYSV  60
            MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEI+HQSGVDIRQFNRANLMPPGVYSV
Sbjct  1    MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEINHQSGVDIRQFNRANLMPPGVYSV  60

Query  61   DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP  120
            DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP
Sbjct  61   DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP  120

Query  121  APRIEGSSWQFDSDKLQLNISIPQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR  180
            APRIEGSSWQFDSDKLQLNISI QIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR
Sbjct  121  APRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR  180

Query  181  SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM  240
            SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM
Sbjct  181  SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM  240

Query  241  IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ  300
            IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ
Sbjct  241  IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ  300

Query  301  SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGQTDVDVSVGE  360
            SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREG TDVDVSVGE
Sbjct  301  SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGE  360

Query  361  LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA  420
            LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA
Sbjct  361  LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA  420

Query  421  RANFSHDDTETGQSYRFLYSKRFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE  480
            RANFSHDDTETGQSYRFLYSK FDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE
Sbjct  421  RANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE  480

Query  481  TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS  540
            TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS
Sbjct  481  TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS  540

Query  541  YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG  600
            YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG
Sbjct  541  YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG  600

Query  601  TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL  660
            TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL
Sbjct  601  TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL  660

Query  661  AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD  720
            AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD
Sbjct  661  AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD  720

Query  721  NYFSKSNIELDNTVVTMVSTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA  780
            NYFSKSNIELDNTVVTMV+TRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA
Sbjct  721  NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA  780

Query  781  SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSLSTPESESGLIEQGVTCH  840
            SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYS+STPESESGLIEQGVTCH
Sbjct  781  SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVTCH  840

19) fimD1 in NC_009801


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score = 1311 bits (4974),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 833/839 (99%), Positives = 835/839 (99%), Gaps = 0/839 (0%)

Query  1    MTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEIDHQSGVDIRQFNRANLMPPGVYSVD  60
            MTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEI+HQSGVDIRQFNRANLMPPGVYSVD
Sbjct  2    MTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEINHQSGVDIRQFNRANLMPPGVYSVD  61

Query  61   IFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDPA  120
            IFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDPA
Sbjct  62   IFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDPA  121

Query  121  LRIEGSSWQFDSDKLQLNISIPQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLRS  180
             RIEGSSWQFDSDKLQLNISI QIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLRS
Sbjct  122  PRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLRS  181

Query  181  DYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIMI  240
            DYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIMI
Sbjct  182  DYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIMI  241

Query  241  GDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQS  300
            GDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQS
Sbjct  242  GDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQS  301

Query  301  AVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGQTDVDVSVGEL  360
            AVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREG TDVDVSVGEL
Sbjct  302  AVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGEL  361

Query  361  RDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHAR  420
            RDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHAR
Sbjct  362  RDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHAR  421

Query  421  ANFSHDDTETGQSYRFLYSKRFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWET  480
            ANFSHDDTETGQSYRFLYSK FDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWET
Sbjct  422  ANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWET  481

Query  481  GNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWSY  540
            GNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWSY
Sbjct  482  GNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWSY  541

Query  541  SNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSGT  600
            SNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSGT
Sbjct  542  SNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSGT  601

Query  601  ALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGILA  660
            ALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGILA
Sbjct  602  ALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGILA  661

Query  661  HSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISDN  720
            HSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISDN
Sbjct  662  HSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISDN  721

Query  721  YFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDAS  780
            YFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDAS
Sbjct  722  YFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDAS  781

Query  781  LADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSLSTPESESGLIEQGVTCH  839
            LADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYS+STPESESGLIEQGVTCH
Sbjct  782  LADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVTCH  840

20) SSON53_22490 in NC_016822


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score = 1306 bits (4954),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 832/840 (99%), Positives = 834/840 (99%), Gaps = 0/840 (0%)

Query  1    MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEIDHQSGVDIRQFNRANLMPPGVYSV  60
            MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEI+HQSGVDIRQFNRANLMPPGVYSV
Sbjct  1    MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEINHQSGVDIRQFNRANLMPPGVYSV  60

Query  61   DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP  120
            DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP
Sbjct  61   DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP  120

Query  121  APRIEGSSWQFDSDKLQLNISIPQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR  180
            APRIEGSSWQFDSDKLQLNISI QIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR
Sbjct  121  APRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR  180

Query  181  SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGCAEYNSISTWIQRDIAALRSQIM  240
            SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDG AEYNSISTWIQRDIAALRSQIM
Sbjct  181  SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM  240

Query  241  IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ  300
            IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ
Sbjct  241  IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ  300

Query  301  SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGQTDVDVSVGE  360
            SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREG TDVDVSVGE
Sbjct  301  SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGE  360

Query  361  LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA  420
            LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA
Sbjct  361  LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA  420

Query  421  RANFSHDDTETGQSYRFLYSKRFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE  480
            RANFSHDDTETGQSYRFLYSK FDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE
Sbjct  421  RANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE  480

Query  481  TGNRRSCVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS  540
            TGNRRS VEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS
Sbjct  481  TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS  540

Query  541  YSNTARQGTGNNHASDNTSEQIYMLSLSVPLLGWWGNSYATYSVSQNDNSGSSHQLGLSG  600
            YSNTARQGTGNNHASDNTSEQIYMLSLSVPL GWWGNSYATYSVSQNDNSGSSHQLGLSG
Sbjct  541  YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG  600

Query  601  TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL  660
            TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL
Sbjct  601  TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL  660

Query  661  AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD  720
            AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD
Sbjct  661  AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD  720

Query  721  NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA  780
            NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA
Sbjct  721  NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA  780

Query  781  SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSLSTPESESGLIEQGVTCH  840
            SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYS+STPESESGLIEQGVTCH
Sbjct  781  SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVTCH  840

21) lpfC in NC_011751


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score = 1279 bits (4854),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 799/840 (96%), Positives = 827/840 (99%), Gaps = 0/840 (0%)

Query  1    MMTTRIKVGLTAGTCLIFSQSLMAEVSVFNPALLEIDHQSGVDIRQFNRANLMPPGVYSV  60
            MMTTRI VGLTAGTCLIFSQ+LMAEVSVFNPALLEI+HQSGVDIRQFNRANLMPPGVYSV
Sbjct  1    MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEINHQSGVDIRQFNRANLMPPGVYSV  60

Query  61   DIFINGKMFERQDVTFVQDNPDADLHACFVAIKKTLTTFGVKVDALKSLNDVDETVCIDP  120
            DIFINGKMFERQDVTFVQDNPDADLHACF+AIKKTL++FG+KVDALKS+NDVDETVC+DP
Sbjct  61   DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP  120

Query  121  GPRIEGSSWQFDSDKLQLNISIPQIYMDAMAYDYISPSRWDEGINALTINYDFSGSHTLR  180
            +PRIEGSSWQFDSDKLQLNISI QIYMDAMAYDYISP+RWDEGINALTINYDFSGSHTLR
Sbjct  121  APRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR  180

Query  181  SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTTDGSAEYNSISTWIQRDIAALRSQIM  240
            SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNT+DG AEYNSISTWIQRDIAALRSQIM
Sbjct  181  SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM  240

Query  241  IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ  300
            IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ
Sbjct  241  IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ  300

Query  301  SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGQTDVDVSVGE  360
            SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREG TDVDVSVGE
Sbjct  301  SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGE  360

Query  361  LRDEDGFTPDVIQAQILHGFPYGFTLYGGMQAAEKYGSAALGVGKDLGALGAISFDVTHA  420
            LRDEDGFTPDV+QAQILHGF+ G+TLYGGMQAAE+YGSAALGVGKDLGALGAISFDVTHA
Sbjct  361  LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA  420

Query  421  RAKFSHDDTETGQSYRFLYSKRFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNNPEDFWE  480
            RA+FSHDDTETGQSYRFLYSK FDDTDTSLRLVGYRYSTEGYYTLNEWASRRN+PEDFWE
Sbjct  421  RANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE  480

Query  481  TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS  540
            TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS
Sbjct  481  TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS  540

Query  541  YSNTARQGTGNNNASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG  600
            YSNTARQGTGNN+ASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG
Sbjct  541  YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG  600

Query  601  TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGTYGTVNGSYNYSQNSQRLNYGIRGGIL  660
            TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDG+YGTVNGSYNYSQNSQRLNYGIRGGIL
Sbjct  601  TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL  660

Query  661  AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD  720
            AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD
Sbjct  661  AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD  720

Query  721  NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFKVVNAKGKPAPFGAIAAVQNT  780
            NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLF+V+NA+GKP PFGAIAA+Q++
Sbjct  721  NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA  780

Query  781  SSADSGIVGDLGELYLSGLPEKGQVMLSWGENAATTCTFDYSLSIPESESGLIEQGVTCH  840
            S ADSGIVGD GELYLSGLPEKGQV LSWGENA+T C F+YS+S PESESGLIEQGVTCH
Sbjct  781  SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVTCH  840

22) lpfC in NC_011750


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score = 1278 bits (4848),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 796/840 (95%), Positives = 825/840 (99%), Gaps = 0/840 (0%)

Query  1    MMTTRIKVGLTAGTCLIFSQSLMAEVSVFNPALLEIDHQSGVDIRQFNRANLMPPGVYSV  60
            MMTTRI VGLTAGTCLIFSQ+LMAEVSVFNPALLEI+HQSGVDIRQFNRANLMPPGVYSV
Sbjct  1    MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEINHQSGVDIRQFNRANLMPPGVYSV  60

Query  61   DIFINGKMFERQDVTFVQDNPDADLHACFVAIKKTLTTFGVKVDALKSLNDVDETVCIDP  120
            DIFINGKMFERQDVTFVQDNPDADLHACF+AIKKTL++FG+KVDALKS+NDVDETVC+DP
Sbjct  61   DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP  120

Query  121  GPRIEGSSWQFDSDKLQLNISIPQIYMDAMAYDYISPSRWDEGINALTINYDFSGSHTLR  180
            +PRIEGSSWQFDSDKLQLNISI QIYMDAMAYDYISP+RWDEGINALTINYDFSGSHTLR
Sbjct  121  APRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR  180

Query  181  SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTTDGSAEYNSISTWIQRDIAALRSQIM  240
            SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNT+DG AEYNSISTWIQRDIAALRSQIM
Sbjct  181  SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM  240

Query  241  IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ  300
            IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ
Sbjct  241  IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ  300

Query  301  SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGQTDVDVSVGE  360
            SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREG TDVDVSVGE
Sbjct  301  SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGE  360

Query  361  LRDEDGFTPDVIQAQILHGFPYGFTLYGGMQAAEKYGSAALGVGKDLGALGAISFDVTHA  420
            LRDEDGFTPDV+QAQILHGF+ G+TLYGGMQAAE+YGSAALGVGKDLGALGAISFDVTHA
Sbjct  361  LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA  420

Query  421  RAKFSHDDTETGQSYRFLYSKRFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNNPEDFWE  480
            RA+FSHDDTETGQSYRFLYSK FDDTDTSLRLVGYRYSTEGYYTLNEWASRRN+PEDFWE
Sbjct  421  RANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE  480

Query  481  TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS  540
            TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS
Sbjct  481  TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS  540

Query  541  YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG  600
            YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG
Sbjct  541  YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG  600

Query  601  TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGTYGTVNGSYNYSQNSQRLNYGIRGGIL  660
            TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDG+YGTVNGSYNYSQNSQRLNYGIRGGIL
Sbjct  601  TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL  660

Query  661  AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD  720
            AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD
Sbjct  661  AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD  720

Query  721  NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTRVGYRVLFRVAGTQGKPAPFGAIATVQNT  780
            NYFSKSNIELDNTVVTMVPTRGAVVKAEFVT+VGYRVLFRV  ++GKP PFGAIA++Q++
Sbjct  721  NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA  780

Query  781  SSADSGIVGDQGELYLSGLPEKGQVMLSWGENVATTCTFDYSLSIPESESGLIEQGVTCH  840
            S ADSGIVGD+GELYLSGLPEKGQV LSWGEN +T C F+YS+S PESESGLIEQGVTCH
Sbjct  781  SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVTCH  840

23) lpfC in NC_017646


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score = 1278 bits (4848),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 796/840 (95%), Positives = 825/840 (99%), Gaps = 0/840 (0%)

Query  1    MMTTRIKVGLTAGTCLIFSQSLMAEVSVFNPALLEIDHQSGVDIRQFNRANLMPPGVYSV  60
            MMTTRI VGLTAGTCLIFSQ+LMAEVSVFNPALLEI+HQSGVDIRQFNRANLMPPGVYSV
Sbjct  1    MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEINHQSGVDIRQFNRANLMPPGVYSV  60

Query  61   DIFINGKMFERQDVTFVQDNPDADLHACFVAIKKTLTTFGVKVDALKSLNDVDETVCIDP  120
            DIFINGKMFERQDVTFVQDNPDADLHACF+AIKKTL++FG+KVDALKS+NDVDETVC+DP
Sbjct  61   DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP  120

Query  121  GPRIEGSSWQFDSDKLQLNISIPQIYMDAMAYDYISPSRWDEGINALTINYDFSGSHTLR  180
            +PRIEGSSWQFDSDKLQLNISI QIYMDAMAYDYISP+RWDEGINALTINYDFSGSHTLR
Sbjct  121  APRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR  180

Query  181  SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTTDGSAEYNSISTWIQRDIAALRSQIM  240
            SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNT+DG AEYNSISTWIQRDIAALRSQIM
Sbjct  181  SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM  240

Query  241  IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ  300
            IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ
Sbjct  241  IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ  300

Query  301  SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGQTDVDVSVGE  360
            SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREG TDVDVSVGE
Sbjct  301  SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGE  360

Query  361  LRDEDGFTPDVIQAQILHGFPYGFTLYGGMQAAEKYGSAALGVGKDLGALGAISFDVTHA  420
            LRDEDGFTPDV+QAQILHGF+ G+TLYGGMQAAE+YGSAALGVGKDLGALGAISFDVTHA
Sbjct  361  LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA  420

Query  421  RAKFSHDDTETGQSYRFLYSKRFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNNPEDFWE  480
            RA+FSHDDTETGQSYRFLYSK FDDTDTSLRLVGYRYSTEGYYTLNEWASRRN+PEDFWE
Sbjct  421  RANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE  480

Query  481  TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS  540
            TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS
Sbjct  481  TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS  540

Query  541  YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG  600
            YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG
Sbjct  541  YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG  600

Query  601  TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGTYGTVNGSYNYSQNSQRLNYGIRGGIL  660
            TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDG+YGTVNGSYNYSQNSQRLNYGIRGGIL
Sbjct  601  TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL  660

Query  661  AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD  720
            AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD
Sbjct  661  AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD  720

Query  721  NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTRVGYRVLFRVAGTQGKPAPFGAIATVQNT  780
            NYFSKSNIELDNTVVTMVPTRGAVVKAEFVT+VGYRVLFRV  ++GKP PFGAIA++Q++
Sbjct  721  NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA  780

Query  781  SSADSGIVGDQGELYLSGLPEKGQVMLSWGENVATTCTFDYSLSIPESESGLIEQGVTCH  840
            S ADSGIVGD+GELYLSGLPEKGQV LSWGEN +T C F+YS+S PESESGLIEQGVTCH
Sbjct  781  SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVTCH  840

24) lpfC in NC_010498


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score = 1277 bits (4843),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 797/840 (95%), Positives = 825/840 (99%), Gaps = 0/840 (0%)

Query  1    MMTTRIKVGLTAGTCLIFSQSLMAEVSVFNPALLEIDHQSGVDIRQFNRANLMPPGVYSV  60
            MMTTRI VGLTAGTCLIFSQ+LMAEVSVFNPALLEI+HQSGVDIRQFNRANLMPPGVYSV
Sbjct  1    MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEINHQSGVDIRQFNRANLMPPGVYSV  60

Query  61   DIFINGKMFERQDVTFVQDNPDADLHACFVAIKKTLTTFGVKVDALKSLNDVDETVCIDP  120
            DIFINGKMFERQDVTFVQDNPDADLHACF+AIKKTL++FG+KVDALKS+NDVDETVC+DP
Sbjct  61   DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP  120

Query  121  GPRIEGSSWQFDSDKLQLNISIPQIYMDAMAYDYISPSRWDEGINALTINYDFSGSHTLR  180
            +PRIEGSSWQFDSDKLQLNISI QIYMDAMAYDYISP+RWDEGINALTINYDFSGSHTLR
Sbjct  121  APRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR  180

Query  181  SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTTDGSAEYNSISTWIQRDIAALRSQIM  240
            SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNT+DG AEYNSISTWIQRDIAALRSQIM
Sbjct  181  SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM  240

Query  241  IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ  300
            IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ
Sbjct  241  IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ  300

Query  301  SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGQTDVDVSVGE  360
            SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREG TDVDVSVGE
Sbjct  301  SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGE  360

Query  361  LRDEDGFTPDVIQAQILHGFPYGFTLYGGMQAAEKYGSAALGVGKDLGALGAISFDVTHA  420
            LRDEDGFTPDV+QAQILHGF+ G+TLYGGMQAAE+YGSAALGVGKDLGALGAISFDVTHA
Sbjct  361  LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA  420

Query  421  RAKFSHDDTETGQSYRFLYSKRFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNNPEDFWE  480
            RA+FSHDDTETGQSYRFLYSK FDDTDTSLRLVGYRYSTEGYYTLNEWASRRN+PEDFWE
Sbjct  421  RANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE  480

Query  481  TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS  540
            TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS
Sbjct  481  TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS  540

Query  541  YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG  600
            YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG
Sbjct  541  YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG  600

Query  601  TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGTYGTVNGSYNYSQNSQRLNYGIRGGIL  660
            TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDG+YGTVNGSYNYSQNSQRLNYGIRGGIL
Sbjct  601  TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL  660

Query  661  AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD  720
            AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD
Sbjct  661  AHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD  720

Query  721  NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTRVGYRVLFRVAGTKGKPAPFGAIATVQNT  780
            NYFSKSNIELDNTVVTMVPTRGAVVKAEFVT+VGYRVLFRV  ++GKP PFGAIA++Q++
Sbjct  721  NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA  780

Query  781  SSADSGIVGDLGELYLSGLPEKGQVMLSWGENAATTCTFDYSISIPESESGLIEQGVTCH  840
            S ADSGIVGD GELYLSGLPEKGQV LSWGENA+T C F+YS+S PESESGLIEQGVTCH
Sbjct  781  SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVTCH  840

25) lpfC in NC_017626


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score = 1241 bits (4708),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 795/842 (95%), Positives = 823/842 (98%), Gaps = 3/842 (0%)

Query  1    MTTRIKVGLTAGTCLIFSQSLMAEVSVFNPALLEIDHQSGVDIRQFNRANLMPPGVYSVD  60
            MTTRI VGLTAGTCLIFSQ+LMAEVSVFNPALLEI+HQSGVDIRQFNRANLMPPGVYSVD
Sbjct  2    MTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEINHQSGVDIRQFNRANLMPPGVYSVD  61

Query  61   IFINGKMFERQDVTFVQDNPDADLHACFVAIKKTLTTFGVKVDALKSLNDVDETVCIDPG  120
            IFINGKMFERQDVTFVQDNPDADLHACF+AIKKTL++FG+KVDALKS+NDVDETVC+DP+
Sbjct  62   IFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDPA  121

Query  121  PRIEGSSWQFDSDKLQLNISIPQIYMDAMAYDYISPSRWDEGINALTINYDFSGSHTLRS  180
            PRIEGSSWQFDSDKLQLNISI QIYMDAMAYDYISP+RWDEGINALTINYDFSGSHTLRS
Sbjct  122  PRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLRS  181

Query  181  DYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTTDGSAEYNSISTWIQRDIAALRSQIMI  240
            DYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNT+DG AEYNSISTWIQRDIAALRSQIMI
Sbjct  182  DYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIMI  241

Query  241  GDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQS  300
            GDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQS
Sbjct  242  GDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQS  301

Query  301  AVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGQTDVDVSVGEL  360
            AVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREG TDVDVSVGEL
Sbjct  302  AVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGEL  361

Query  361  RDEDGFTPDVIQAQILHGFPYGFTLYGGMQAAEKYGSAALGVGKDLGALGAISFDVTHAR  420
            RDEDGFTPDV+QAQILHGF+ G+TLYGGMQAAE+YGSAALGVGKDLGALGAISFDVTHAR
Sbjct  362  RDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHAR  421

Query  421  AKFSHDDTETGQSYRFLYSKRFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNNPEDFWET  480
            A+FSHDDTETGQSYRFLYSK FDDTDTSLRLVGYRYSTEGYYTLNEWASRRN+PEDFWET
Sbjct  422  ANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWET  481

Query  481  GNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWSY  540
            GNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWSY
Sbjct  482  GNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWSY  541

Query  541  SNTARQGTGNNNASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSGT  600
            SNTARQGTGNN+ASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSGT
Sbjct  542  SNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSGT  601

Query  601  ALERNNLSWNLMQSYNSHDDEVGGNMSLtydgtygtygtvngsynySQNSQRLNYGIRGG  660
            ALERNNLSWNLMQSYNSHDDEVGGNMSL      G+YGTVNGSYNYSQNSQRLNYGIRGG
Sbjct  602  ALERNNLSWNLMQSYNSHDDEVGGNMSL---TYDGSYGTVNGSYNYSQNSQRLNYGIRGG  658

Query  661  ILAHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAI  720
            ILAHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAI
Sbjct  659  ILAHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAI  718

Query  721  SDNYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFKVVNAKGKPAPFGAIAAVQ  780
            SDNYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLF+V+NA+GKP PFGAIAA+Q
Sbjct  719  SDNYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQ  778

Query  781  NTSSADSGIVGDLGELYLSGLPEKGQVMLSWGENAATTCTFDYSLSIPESESGLIEQGVT  840
            ++S ADSGIVGD GELYLSGLPEKGQV LSWGENA+T C F+YS+S PESESGLIEQGVT
Sbjct  779  DASLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVT  838

Query  841  CH  842
            CH
Sbjct  839  CH  840

26) Entcl_4427 in NC_014618


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score =  923 bits (3495),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 528/820 (65%), Positives = 701/820 (86%), Gaps = 8/820 (0%)

Query  27   SVFNPALLEIDHPMNIDIRQFNRTNTLPAGEYKVDLYINGKLLDRRMVTFVQDKPDGELH  86
            SVFNPALLEI+H   +DIRQFNR+N +P+G Y VD++INGK+++R+ VTFVQD+PD++LH
Sbjct  27   SVFNPALLEINHQSGVDIRQFNRANLMPPGVYSVDIFINGKMFERQDVTFVQDNPDADLH  86

Query  87   PCFTEVKETLKSFGVKVDALKTLENVDDKACINPVPLIDGAVWTLDADKLTLALSVPQIY  146
            +CF  +K TL SFG+KVDALK++++VD+  C++P P I+G+ W +D+DKL L +S+ QIY
Sbjct  87   ACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDPAPRIEGSSWQFDSDKLQLNISIHQIY  146

Query  147  LDIAARDTIPPSRWDEGITALMMNYDLSGTHTVKSDY--DESDYYYLNLQNGFNLGAWRL  204
            +D  A D I+P+RWDEGI AL +NYD+SG+HT++SDY  +E+D  YLNL+NG+N+G+WRL
Sbjct  147  MDAMAYDYISPTRWDEGINALTINYDFSGSHTLRSDYGSQETDTSYLNLRNGLNIGPWRL  206

Query  205  RNYSTLNHSDGRTDYHSISSYVQRDIAVLRSQVMLGDTWTASDVFDSTQIRGARLYTDDD  264
            RNYSTLN SDGR++Y+SIS+ +QRDIA LRSQ+M+GDTWTASD+FDSTQIRGARLYTD+D
Sbjct  207  RNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIMIGDTWTASDIFDSTQIRGARLYTDND  266

Query  265  MLPSSQNGFAPVVRGVARTNATVIIKQNGYVIYQSAVPQGAFAITDMNTTNSGGDLDVTI  324
            MLP+SQNGFAPVVRG+A++NATVII+QNGYVIYQSAVPQGAF ITD+NT+++GGDLDVTI
Sbjct  267  MLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQSAVPQGAFEITDLNTASTGGDLDVTI  326

Query  325  KEEDGSEQHFTQPYASLAILKREGQTDVDISVGELRNQDHFTPNVLQAQILHGLPWGMTV  384
            KEEDGSEQ+FTQPYASLAILKREG TDVD+SVGELR++D FTP+VLQAQILHG++ G+T+
Sbjct  327  KEEDGSEQRFTQPYASLAILKREGLTDVDVSVGELRDEDGFTPDVLQAQILHGFSHGITL  386

Query  385  YGGVQAAEDYDSLALGMGKDLGDIGAISFDVTHARARFDDGDDESGQSYRFLYSKRFDET  444
            YGG+QAAE+Y+S ALG+GKDLG +GAISFDVTHARA F ++D E+GQSYRFLYSK FD+T
Sbjct  387  YGGMQAAENYGSAALGVGKDLGALGAISFDVTHARANFSHDDTETGQSYRFLYSKLFDDT  446

Query  445  DTNFRLVGYRYSTQGYYSMNEWAQRQDDASDFWISGNRRSRLEGTWTQSFGNGWGNLYLT  504
            DT++RLVGYRYST+GYY++NEWA R++ + DFW +GNRRSR+EGT TQS+G + GNLYLT
Sbjct  447  DTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWETGNRRSRVEGTLTQSLGRDYGNLYLT  506

Query  505  VSRQQYWKTDEVERLVQLGYSNYWHRISWNISWNYTDSINHSSGYYGHNNHDDSNYDGEQ  564
            +SRQQYW TD+VERL+Q+GYS+ W R+SWN+SW+Y+++  +++G     N++ S+  +EQ
Sbjct  507  LSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWSYSNTARQGTG-----NNHASDNTSEQ  561

Query  565  IFMLSVSIPLSGWMENSYVNYSLTQNNHNESTMQAGLNGTLLEGHNLSYNLQESWISSPE  624
            I+MLS+S+PLSGW  NSY  YS++QN+++ S+ Q GL+GT LE +NLS NL +S  +S +
Sbjct  562  IYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSGTALERNNLSWNLMQS-YNSHD  620

Query  625  DTYSGSAGLSYDGTYGSVNGSYDYSRGSQRLNYGVKGGVLVHADGVTFSQQLGETVALIK  684
            D  +G+ +L+YDG+YG+VNGSY+YS+ SQRLNYG++GG+L H++GVT+SQ+LGET+AL+K
Sbjct  621  DEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGILAHSEGVTLSQELGETIALVK  680

Query  685  APGAEGMGIDNATGVSTDWRGYTVKTQMTPYDENRVSISSDYFEKANVELENSVVNIVPT  744
            APGA G+ IDN  G +TDWRGYTVKTQ+ PYDENRV+IS +YF K+N+EL+N+VV +VPT
Sbjct  681  APGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISDNYFSKSNIELDNTVVTMVPT  740

Query  745  RGAVVRAEFVTHVGYRVLFNVHLPDGASVPFGAMASAELESGTVTGIVGDNGDLYLSGMP  804
            RGAVV+AEFVTHVGYRVLF V  ++G +VPFGA+A+ +  S + +GIVGD G+LYLSG+P
Sbjct  741  RGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDASLADSGIVGDRGELYLSGLP  800

Query  805  IEGTLSLRWGESSAKTCHVSYRLDEKQLKDGLIQTPASCR  844
              G ++L WGE+++  C  +Y +   +   GLI+   +C+
Sbjct  801  EKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVTCH  840

27) sbdC in NC_015761


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score =  917 bits (3473),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 549/824 (67%), Positives = 710/824 (87%), Gaps = 11/824 (1%)

Query  23   MARDSLFNPSLLEIDHPVDVDIHQFNRANMLPPGDYKVDIIINDKFFEKRDVKFVQDKPD  82
            MA  S+FNP+LLEI+H  +VDI+QFNRAN++PPG Y VDI+IN+K FE++DV FVQD+PD
Sbjct  23   MAEVSVFNPALLEINHQSGVDIRQFNRANLMPPGVYSVDIFINGKMFERQDVTFVQDNPD  82

Query  83   AELHPCFVAVKEVLSSYGVKVDALKALQNVDSQACLNPAPFIDGSIWTFDSNKFVLNISI  142
            A+LH+CF+A+K  LSS+G+KVDALK++++VD   CL+PAP I+GS W FDS+K+ LNISI
Sbjct  83   ADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDPAPRIEGSSWQFDSDKLQLNISI  142

Query  143  PQIYLDTAAYGYISPSRWDEGINAMMVNYDFSGTHTVKSNHDVGEDDTYYLNLRNGINLG  202
             QIY+D+ AY+YISP+RWDEGINA+ +NYDFSG+HT++S+ +  E DT YLNLRNG+N+G
Sbjct  143  HQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLRSDYGSQETDTSYLNLRNGLNIG  202

Query  203  AWRVRNYSTLNATGSDTEYHSISSYIQRDIAALRSQIMVGDTWTASDVFDSTQIRGVRLY  262
            +WR+RNYSTLN++++ +EY+SIS+ IQRDIAALRSQIM+GDTWTASD+FDSTQIRG RLY
Sbjct  203  PWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIMIGDTWTASDIFDSTQIRGARLY  262

Query  263  TDDDMLPSSLNGFAPIVRGVAKSNATVIIRQNKYVIYQSAVPQGAFEITDLNTVSGGGDL  322
            TD+DMLP+S NGFAP+VRG+AKSNATVIIRQN YVIYQSAVPQGAFEITDLNT S GGDL
Sbjct  263  TDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQSAVPQGAFEITDLNTASTGGDL  322

Query  323  DVTIKEEDGSEQHFTQPYASLAILKREGQTDLDMSVGELRDENSFTPNVVQAQVLHGLPW  382
            DVTIKEEDGSEQ+FTQPYASLAILKREG TD+D+SVGELRDE++FTP+V+QAQ+LHG++ 
Sbjct  323  DVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGELRDEDGFTPDVLQAQILHGFSH  382

Query  383  GLTLYGGTQIAEDYAAAAFGMGKDMGSFGAMSLDVTHARSHFNDGDDENGQSWRFLYSKR  442
            G+TLYGG Q AE+Y++AA+G+GKD+G++GA+S+DVTHAR++F+++D E GQS RFLYSK 
Sbjct  383  GITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHARANFSHDDTETGQSYRFLYSKL  442

Query  443  FDDTDTNFRLVGYRYSTEGFYSLSEWASRQDNGSDFWVKGNRRSRVEGTWTQSFGRDWGN  502
            FDDTDT++RLVGYRYSTEG+Y+L+EWASR+++  DFW  GNRRSRVEGT TQS+GRD GN
Sbjct  443  FDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWETGNRRSRVEGTLTQSLGRDYGN  502

Query  503  IYLTISRQQYWQTDEVERLVQLGYSNTWRQVSWNVSWNYTDSINRYSGNKYYnddndddn  562
            +YLT+SRQQYW+TD+VERL+Q+GYS++W+++SWNVSW+Y+++  + +GN+     +  DN
Sbjct  503  LYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWSYSNTARQGTGNN-----HASDN  557

Query  563  nHEHIFMLSVSIPLSGWLDNSYVNYSMTQNNHNESSMQAGIGGTLLEGHNLSYNVQESWD  622
              E+I+MLS+S+PLSGW +NSY  YS++QN+++ SS Q G++GT LE +NLS N+ +S +
Sbjct  558  TSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSGTALERNNLSWNLMQSYN  617

Query  623  SSPEDVYSGNASMEYNGTYGAVNGSYAWSRDSQRLNYGARGGILVHSGGITFSQELGETV  682
            S  ++V +GN S+ Y+G+YG+VNGSY  S++SQRLNYG RGGIL HS G+T+SQELGET+
Sbjct  618  SHDDEV-GGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGILAHSEGVTLSQELGETI  676

Query  683  ALVEAPGAGGLSVENATGVSTDWRGYTVKTQLNPYDENRVAINSNYFAKANIELDNTVVN  742
            ALV APGA+GL ++N  G +TDWRGYTVKTQLNPYDENRVAI+ NYF+K+NIELDNTVV 
Sbjct  677  ALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISDNYFSKSNIELDNTVVT  736

Query  743  LVPTRGAVVKAAFVTHVGYRVLFNVNQGNGKPVPFGAMATAELDSGTVTGIVGDNGELYL  802
            +VPTRGAVVKA FVTHVGYRVLF V ++NGKPVPFGA+A+ +  S + +GIVGD GELYL
Sbjct  737  MVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDASLADSGIVGDRGELYL  796

Query  803  SGMPEKGQFIIS----GQNTCIVDYHLAE-QKDNELIQIPVICK  841
            SG+PEKGQ  +S    +   CI +Y ++  + ++ LI+  V C 
Sbjct  797  SGLPEKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVTCH  840

28) A464_3923 in NC_021870


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score =  917 bits (3475),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 549/824 (67%), Positives = 711/824 (87%), Gaps = 11/824 (1%)

Query  23   MARDSLFNPSLLEIDHPVDVDIHQFNRANMLPPGDYKVDIIINDKFFEKRDVKFVQDKPD  82
            MA  S+FNP+LLEI+H  +VDI+QFNRAN++PPG Y VDI+IN+K FE++DV FVQD+PD
Sbjct  23   MAEVSVFNPALLEINHQSGVDIRQFNRANLMPPGVYSVDIFINGKMFERQDVTFVQDNPD  82

Query  83   AELHPCFVAVKEVLSSYGVKVDALKALQNVDSQACLNPAPFIDGSIWTFDSNKFVLNISI  142
            A+LH+CF+A+K  LSS+G+KVDALK++++VD   CL+PAP I+GS W FDS+K+ LNISI
Sbjct  83   ADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDPAPRIEGSSWQFDSDKLQLNISI  142

Query  143  PQIYLDTAAYGYISPSRWDEGINAMMVNYDFSGTHTVKSNHDIGEDDTYYLNLRNGINLG  202
             QIY+D+ AY+YISP+RWDEGINA+ +NYDFSG+HT++S+ +  E DT YLNLRNG+N+G
Sbjct  143  HQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLRSDYGSQETDTSYLNLRNGLNIG  202

Query  203  AWRVRNYSTLNATGSDTEYHSISSYIQRDIAALRSQIMVGDTWTASDVFDSTQIRGVRLY  262
            +WR+RNYSTLN++++ +EY+SIS+ IQRDIAALRSQIM+GDTWTASD+FDSTQIRG RLY
Sbjct  203  PWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIMIGDTWTASDIFDSTQIRGARLY  262

Query  263  TDDDMLPSSLNGFAPIVRGVAKSNATVIIRQNKYVIYQSAVPQGAFEITDLNTVSGGGDL  322
            TD+DMLP+S NGFAP+VRG+AKSNATVIIRQN YVIYQSAVPQGAFEITDLNT S GGDL
Sbjct  263  TDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQSAVPQGAFEITDLNTASTGGDL  322

Query  323  DVTIKEEDGSEQHFTQPYASLAILKREGQTDLDMSVGELRDENSFTPNVVQAQVLHGLPW  382
            DVTIKEEDGSEQ+FTQPYASLAILKREG TD+D+SVGELRDE++FTP+V+QAQ+LHG++ 
Sbjct  323  DVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGELRDEDGFTPDVLQAQILHGFSH  382

Query  383  GLTLYGGTQIAEDYAAAAFGMGKDMGSFGAMSLDVTHARSHFNDGDDENGQSWRFLYSKR  442
            G+TLYGG Q AE+Y++AA+G+GKD+G++GA+S+DVTHAR++F+++D E GQS RFLYSK 
Sbjct  383  GITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHARANFSHDDTETGQSYRFLYSKL  442

Query  443  FDDTDTNFRLVGYRYSTEGFYSLSEWASRQDNGSDFWVTGNRRSRVEGTWTQSFGRDWGN  502
            FDDTDT++RLVGYRYSTEG+Y+L+EWASR+++  DFW TGNRRSRVEGT TQS+GRD GN
Sbjct  443  FDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWETGNRRSRVEGTLTQSLGRDYGN  502

Query  503  IYLTISRQQYWQTDEVERLVQLGYSNTWRQVSWNVSWNYTDSINRYSGNKYYnddndddn  562
            +YLT+SRQQYW+TD+VERL+Q+GYS++W+++SWNVSW+Y+++  + +GN+     +  DN
Sbjct  503  LYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWSYSNTARQGTGNN-----HASDN  557

Query  563  nHEHIFMLSVSIPLSGWLDSSYVNYSMTQNNHNESSMQAGIGGTLLEGHNLSYNVQESWD  622
              E+I+MLS+S+PLSGW ++SY  YS++QN+++ SS Q G++GT LE +NLS N+ +S +
Sbjct  558  TSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSGTALERNNLSWNLMQSYN  617

Query  623  SSPEDVYSGNASMEYNGTYGAVNGSYAWSRDSQRLNYGARGGILVHSGGITFSQELGETV  682
            S  ++V +GN S+ Y+G+YG+VNGSY  S++SQRLNYG RGGIL HS G+T+SQELGET+
Sbjct  618  SHDDEV-GGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGILAHSEGVTLSQELGETI  676

Query  683  ALVEAPGAGGLSVENATGVSTDWRGYTVKTQLNPYDENRVAINSNYFAKANIELDNTVVN  742
            ALV APGA+GL ++N  G +TDWRGYTVKTQLNPYDENRVAI+ NYF+K+NIELDNTVV 
Sbjct  677  ALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISDNYFSKSNIELDNTVVT  736

Query  743  LVPTRGAVVKAAFVTHVGYRVLFNVNQGNGKPVPFGAMATAELDSGTVTGIVGDNGELYL  802
            +VPTRGAVVKA FVTHVGYRVLF V ++NGKPVPFGA+A+ +  S + +GIVGD GELYL
Sbjct  737  MVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDASLADSGIVGDRGELYL  796

Query  803  SGMPEKGQFIVS----GQNTCIVDYHLAE-QKDNELIQIPVICK  841
            SG+PEKGQ  +S    +   CI +Y ++  + ++ LI+  V C 
Sbjct  797  SGLPEKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVTCH  840

29) ECH74115_5161 in NC_011353


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score =  899 bits (3406),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 529/845 (63%), Positives = 707/845 (84%), Gaps = 6/845 (0%)

Query  1    MASSHLFITLASGICLLCSISAFARDSLFNPRLLELDHPADNIDIHQFNRSNTLPAGTYK  60
            M ++++ + L++G CL+ S +  A  S+FNP LLE++H +  +DI+QFNR+N +P+G Y 
Sbjct  1    MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEINHQS-GVDIRQFNRANLMPPGVYS  59

Query  61   VDVMINGMLFERQEVKFAQDNPDAELHPCYVAIKNVLATYGIKVDAIKSLANVDDKTCVN  120
            VD+ ING +FERQ+V F QDNPDA+LH+C++AIK+ L+++GIKVDA+KS+ +VD+  C++
Sbjct  60   VDIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLD  119

Query  121  PVPLIDGATWLLDASKLALNITIPQIYLNNAVNGYISPSRWDQGINAMMMNYDFSASHTI  180
            P P I+G++W +D+ KL LNI+I QIY++    +YISP+RWD+GINA+ +NYDFS+SHT+
Sbjct  120  PAPRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTL  179

Query  181  rsnydddddsyy-lnlrnGINLGAWRFRNYSTLNSYDGNVDYHSVSNYIQRDIMALRSQI  239
            RS+Y+ ++     LNLRNG+N+G+WR+RNYSTLN+ DG  +Y+S+S  IQRDI ALRSQI
Sbjct  180  RSDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQI  239

Query  240  MIGDTWTASDVFDSTQVRGVRLYTDDDMLPSSQNGFAPVVHGIAKTNATVIIKQNGYVIY  299
            MIGDTWTASD+FDSTQ+RG RLYTD+DMLP+SQNGFAPVV+GIAK+NATVII+QNGYVIY
Sbjct  240  MIGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIY  299

Query  300  QSAVPQGAFALTDLNTTSSGGDLDVTIKEEDGSEQHFIQPFTSLAILKREGQTDVDLSIG  359
            QSAVPQGAF +TDLNT+S+GGDLDVTIKEEDGSEQ+F QP++SLAILKREG TDVD+S+G
Sbjct  300  QSAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVG  359

Query  360  EVRDESGFTPEVLQLQAMHGFPLGITLYGGTQLANDYASAALGIGKDMGALGAISFDVTH  419
            E+RDE GFTP+VLQ Q +HGF+ GITLYGG Q A++Y+SAALG+GKD+GALGAISFDVTH
Sbjct  360  ELRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTH  419

Query  420  ARSQFDYDDNESGQSYRFLYSKRFEDTNTTFRLVGYRYSMEGFYTLNEWVSRQDNDSDFW  479
            AR++F  DD E+GQSYRFLYSK F+DT+T++RLVGYRYS EG+YTLNEW SR+++  DFW
Sbjct  420  ARANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFW  479

Query  480  VTGNRRSRFEGTWTQSFTPGWGNIYLTFSRQEYWQTDEVERLLQFGYNNNWRNISWNVSW  539
             TGNRRSR EGT TQS+  + GN+YLT+SRQ+YW+TD+VERL+QFGY+++W+ +SWNVSW
Sbjct  480  ETGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSW  539

Query  540  NYTDSIKRSLGnhhddnnddFGKEQIFMFSMSIPLSCWMEDSYVNYSLTQNNHHESTMQV  599
            +Y+++ +++ GN+H  +N     EQI+M+S+S+PLS W  +SY  YS++QN++  S+ Q+
Sbjct  540  SYSNTARQGTGNNHASDN---TSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQL  596

Query  600  GLNGTMLEGRNLSYNVQESWMHSPDDSYSGNAGMTYDGTYGSVNGSYSWSRDSQHFDYGA  659
            GL+GT LE  NLS N+ +S  +S DD  +GN ++TYDG+YG+VNGSY+ S++SQ+++YG 
Sbjct  597  GLSGTALERNNLSWNLMQSY-NSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGI  655

Query  660  RGGVLVHSDGVTFSQELGETVALVKAPGAEGLSIENATGISTDWRGYTVKTQLSPYDENR  719
            RGG+L HS+GVT+SQELGET+ALVKAPGA GL I+N  G +TDWRGYTVKTQL+PYDENR
Sbjct  656  RGGILAHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENR  715

Query  720  VALNSDYFSKANIELENTVINLVPTRGAVVKAEFVTHVGYRVLFNVRQVNGKPIMFGAMA  779
            VA++ +YFSK+NIEL+NTV+ +VPTRGAVVKAEFVTHVGYRVLF V + NGKP+ FGA+A
Sbjct  716  VAISDNYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIA  775

Query  780  TASLETGTVTGIVGDNGELYLSGMPEKGEFLLSWGQAADEKCKAAYHITHKPDDTSLVQM  839
            +    + + +GIVGD GELYLSG+PEKG+  LSWG+ A  KC   Y ++    +++L++ 
Sbjct  776  AIQDASLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQ  835

Query  840  DAICR  844
            +  C+
Sbjct  836  GVTCH  840

30) Z5222 in NC_002655


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score =  899 bits (3406),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 529/845 (63%), Positives = 707/845 (84%), Gaps = 6/845 (0%)

Query  1    MASSHLFITLASGICLLCSISAFARDSLFNPRLLELDHPADNIDIHQFNRSNTLPAGTYK  60
            M ++++ + L++G CL+ S +  A  S+FNP LLE++H +  +DI+QFNR+N +P+G Y 
Sbjct  1    MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEINHQS-GVDIRQFNRANLMPPGVYS  59

Query  61   VDVMINGMLFERQEVKFAQDNPDAELHPCYVAIKNVLATYGIKVDAIKSLANVDDKTCVN  120
            VD+ ING +FERQ+V F QDNPDA+LH+C++AIK+ L+++GIKVDA+KS+ +VD+  C++
Sbjct  60   VDIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLD  119

Query  121  PVPLIDGATWLLDASKLALNITIPQIYLNNAVNGYISPSRWDQGINAMMMNYDFSASHTI  180
            P P I+G++W +D+ KL LNI+I QIY++    +YISP+RWD+GINA+ +NYDFS+SHT+
Sbjct  120  PAPRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTL  179

Query  181  rsnydddddsyy-lnlrnGINLGAWRFRNYSTLNSYDGNVDYHSVSNYIQRDIMALRSQI  239
            RS+Y+ ++     LNLRNG+N+G+WR+RNYSTLN+ DG  +Y+S+S  IQRDI ALRSQI
Sbjct  180  RSDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQI  239

Query  240  MIGDTWTASDVFDSTQVRGVRLYTDDDMLPSSQNGFAPVVHGIAKTNATVIIKQNGYVIY  299
            MIGDTWTASD+FDSTQ+RG RLYTD+DMLP+SQNGFAPVV+GIAK+NATVII+QNGYVIY
Sbjct  240  MIGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIY  299

Query  300  QSAVPQGAFALTDLNTTSSGGDLDVTIKEEDGSEQHFIQPFTSLAILKREGQTDVDLSIG  359
            QSAVPQGAF +TDLNT+S+GGDLDVTIKEEDGSEQ+F QP++SLAILKREG TDVD+S+G
Sbjct  300  QSAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVG  359

Query  360  EVRDESGFTPEVLQLQAMHGFPLGITLYGGTQLANDYASAALGIGKDMGALGAISFDVTH  419
            E+RDE GFTP+VLQ Q +HGF+ GITLYGG Q A++Y+SAALG+GKD+GALGAISFDVTH
Sbjct  360  ELRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTH  419

Query  420  ARSQFDYDDNESGQSYRFLYSKRFEDTNTTFRLVGYRYSMEGFYTLNEWVSRQDNDSDFW  479
            AR++F  DD E+GQSYRFLYSK F+DT+T++RLVGYRYS EG+YTLNEW SR+++  DFW
Sbjct  420  ARANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFW  479

Query  480  VTGNRRSRFEGTWTQSFTPGWGNIYLTFSRQEYWQTDEVERLLQFGYNNNWRNISWNVSW  539
             TGNRRSR EGT TQS+  + GN+YLT+SRQ+YW+TD+VERL+QFGY+++W+ +SWNVSW
Sbjct  480  ETGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSW  539

Query  540  NYTDSIKRSLGnhhddnnddFGKEQIFMFSMSIPLSCWMEDSYVNYSLTQNNHHESTMQV  599
            +Y+++ +++ GN+H  +N     EQI+M+S+S+PLS W  +SY  YS++QN++  S+ Q+
Sbjct  540  SYSNTARQGTGNNHASDN---TSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQL  596

Query  600  GLNGTMLEGRNLSYNVQESWMHSPDDSYSGNAGMTYDGTYGSVNGSYSWSRDSQHFDYGA  659
            GL+GT LE  NLS N+ +S  +S DD  +GN ++TYDG+YG+VNGSY+ S++SQ+++YG 
Sbjct  597  GLSGTALERNNLSWNLMQSY-NSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGI  655

Query  660  RGGVLVHSDGVTFSQELGETVALVKAPGAEGLSIENATGISTDWRGYTVKTQLSPYDENR  719
            RGG+L HS+GVT+SQELGET+ALVKAPGA GL I+N  G +TDWRGYTVKTQL+PYDENR
Sbjct  656  RGGILAHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENR  715

Query  720  VALNSDYFSKANIELENTVINLVPTRGAVVKAEFVTHVGYRVLFNVRQVNGKPIMFGAMA  779
            VA++ +YFSK+NIEL+NTV+ +VPTRGAVVKAEFVTHVGYRVLF V + NGKP+ FGA+A
Sbjct  716  VAISDNYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIA  775

Query  780  TASLETGTVTGIVGDNGELYLSGMPEKGEFLLSWGQAADEKCKAAYHITHKPDDTSLVQM  839
            +    + + +GIVGD GELYLSG+PEKG+  LSWG+ A  KC   Y ++    +++L++ 
Sbjct  776  AIQDASLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQ  835

Query  840  DAICR  844
            +  C+
Sbjct  836  GVTCH  840

31) ECs4667 in NC_002695


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score =  899 bits (3406),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 529/845 (63%), Positives = 707/845 (84%), Gaps = 6/845 (0%)

Query  1    MASSHLFITLASGICLLCSISAFARDSLFNPRLLELDHPADNIDIHQFNRSNTLPAGTYK  60
            M ++++ + L++G CL+ S +  A  S+FNP LLE++H +  +DI+QFNR+N +P+G Y 
Sbjct  1    MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEINHQS-GVDIRQFNRANLMPPGVYS  59

Query  61   VDVMINGMLFERQEVKFAQDNPDAELHPCYVAIKNVLATYGIKVDAIKSLANVDDKTCVN  120
            VD+ ING +FERQ+V F QDNPDA+LH+C++AIK+ L+++GIKVDA+KS+ +VD+  C++
Sbjct  60   VDIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLD  119

Query  121  PVPLIDGATWLLDASKLALNITIPQIYLNNAVNGYISPSRWDQGINAMMMNYDFSASHTI  180
            P P I+G++W +D+ KL LNI+I QIY++    +YISP+RWD+GINA+ +NYDFS+SHT+
Sbjct  120  PAPRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTL  179

Query  181  rsnydddddsyy-lnlrnGINLGAWRFRNYSTLNSYDGNVDYHSVSNYIQRDIMALRSQI  239
            RS+Y+ ++     LNLRNG+N+G+WR+RNYSTLN+ DG  +Y+S+S  IQRDI ALRSQI
Sbjct  180  RSDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQI  239

Query  240  MIGDTWTASDVFDSTQVRGVRLYTDDDMLPSSQNGFAPVVHGIAKTNATVIIKQNGYVIY  299
            MIGDTWTASD+FDSTQ+RG RLYTD+DMLP+SQNGFAPVV+GIAK+NATVII+QNGYVIY
Sbjct  240  MIGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIY  299

Query  300  QSAVPQGAFALTDLNTTSSGGDLDVTIKEEDGSEQHFIQPFTSLAILKREGQTDVDLSIG  359
            QSAVPQGAF +TDLNT+S+GGDLDVTIKEEDGSEQ+F QP++SLAILKREG TDVD+S+G
Sbjct  300  QSAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVG  359

Query  360  EVRDESGFTPEVLQLQAMHGFPLGITLYGGTQLANDYASAALGIGKDMGALGAISFDVTH  419
            E+RDE GFTP+VLQ Q +HGF+ GITLYGG Q A++Y+SAALG+GKD+GALGAISFDVTH
Sbjct  360  ELRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTH  419

Query  420  ARSQFDYDDNESGQSYRFLYSKRFEDTNTTFRLVGYRYSMEGFYTLNEWVSRQDNDSDFW  479
            AR++F  DD E+GQSYRFLYSK F+DT+T++RLVGYRYS EG+YTLNEW SR+++  DFW
Sbjct  420  ARANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFW  479

Query  480  VTGNRRSRFEGTWTQSFTPGWGNIYLTFSRQEYWQTDEVERLLQFGYNNNWRNISWNVSW  539
             TGNRRSR EGT TQS+  + GN+YLT+SRQ+YW+TD+VERL+QFGY+++W+ +SWNVSW
Sbjct  480  ETGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSW  539

Query  540  NYTDSIKRSLGnhhddnnddFGKEQIFMFSMSIPLSCWMEDSYVNYSLTQNNHHESTMQV  599
            +Y+++ +++ GN+H  +N     EQI+M+S+S+PLS W  +SY  YS++QN++  S+ Q+
Sbjct  540  SYSNTARQGTGNNHASDN---TSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQL  596

Query  600  GLNGTMLEGRNLSYNVQESWMHSPDDSYSGNAGMTYDGTYGSVNGSYSWSRDSQHFDYGA  659
            GL+GT LE  NLS N+ +S  +S DD  +GN ++TYDG+YG+VNGSY+ S++SQ+++YG 
Sbjct  597  GLSGTALERNNLSWNLMQSY-NSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGI  655

Query  660  RGGVLVHSDGVTFSQELGETVALVKAPGAEGLSIENATGISTDWRGYTVKTQLSPYDENR  719
            RGG+L HS+GVT+SQELGET+ALVKAPGA GL I+N  G +TDWRGYTVKTQL+PYDENR
Sbjct  656  RGGILAHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENR  715

Query  720  VALNSDYFSKANIELENTVINLVPTRGAVVKAEFVTHVGYRVLFNVRQVNGKPIMFGAMA  779
            VA++ +YFSK+NIEL+NTV+ +VPTRGAVVKAEFVTHVGYRVLF V + NGKP+ FGA+A
Sbjct  716  VAISDNYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIA  775

Query  780  TASLETGTVTGIVGDNGELYLSGMPEKGEFLLSWGQAADEKCKAAYHITHKPDDTSLVQM  839
            +    + + +GIVGD GELYLSG+PEKG+  LSWG+ A  KC   Y ++    +++L++ 
Sbjct  776  AIQDASLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQ  835

Query  840  DAICR  844
            +  C+
Sbjct  836  GVTCH  840

32) lpfC in NC_013008


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score =  899 bits (3406),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 529/845 (63%), Positives = 707/845 (84%), Gaps = 6/845 (0%)

Query  1    MASSHLFITLASGICLLCSISAFARDSLFNPRLLELDHPADNIDIHQFNRSNTLPAGTYK  60
            M ++++ + L++G CL+ S +  A  S+FNP LLE++H +  +DI+QFNR+N +P+G Y 
Sbjct  1    MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEINHQS-GVDIRQFNRANLMPPGVYS  59

Query  61   VDVMINGMLFERQEVKFAQDNPDAELHPCYVAIKNVLATYGIKVDAIKSLANVDDKTCVN  120
            VD+ ING +FERQ+V F QDNPDA+LH+C++AIK+ L+++GIKVDA+KS+ +VD+  C++
Sbjct  60   VDIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLD  119

Query  121  PVPLIDGATWLLDASKLALNITIPQIYLNNAVNGYISPSRWDQGINAMMMNYDFSASHTI  180
            P P I+G++W +D+ KL LNI+I QIY++    +YISP+RWD+GINA+ +NYDFS+SHT+
Sbjct  120  PAPRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTL  179

Query  181  rsnydddddsyy-lnlrnGINLGAWRFRNYSTLNSYDGNVDYHSVSNYIQRDIMALRSQI  239
            RS+Y+ ++     LNLRNG+N+G+WR+RNYSTLN+ DG  +Y+S+S  IQRDI ALRSQI
Sbjct  180  RSDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQI  239

Query  240  MIGDTWTASDVFDSTQVRGVRLYTDDDMLPSSQNGFAPVVHGIAKTNATVIIKQNGYVIY  299
            MIGDTWTASD+FDSTQ+RG RLYTD+DMLP+SQNGFAPVV+GIAK+NATVII+QNGYVIY
Sbjct  240  MIGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIY  299

Query  300  QSAVPQGAFALTDLNTTSSGGDLDVTIKEEDGSEQHFIQPFTSLAILKREGQTDVDLSIG  359
            QSAVPQGAF +TDLNT+S+GGDLDVTIKEEDGSEQ+F QP++SLAILKREG TDVD+S+G
Sbjct  300  QSAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVG  359

Query  360  EVRDESGFTPEVLQLQAMHGFPLGITLYGGTQLANDYASAALGIGKDMGALGAISFDVTH  419
            E+RDE GFTP+VLQ Q +HGF+ GITLYGG Q A++Y+SAALG+GKD+GALGAISFDVTH
Sbjct  360  ELRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTH  419

Query  420  ARSQFDYDDNESGQSYRFLYSKRFEDTNTTFRLVGYRYSMEGFYTLNEWVSRQDNDSDFW  479
            AR++F  DD E+GQSYRFLYSK F+DT+T++RLVGYRYS EG+YTLNEW SR+++  DFW
Sbjct  420  ARANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFW  479

Query  480  VTGNRRSRFEGTWTQSFTPGWGNIYLTFSRQEYWQTDEVERLLQFGYNNNWRNISWNVSW  539
             TGNRRSR EGT TQS+  + GN+YLT+SRQ+YW+TD+VERL+QFGY+++W+ +SWNVSW
Sbjct  480  ETGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSW  539

Query  540  NYTDSIKRSLGnhhddnnddFGKEQIFMFSMSIPLSCWMEDSYVNYSLTQNNHHESTMQV  599
            +Y+++ +++ GN+H  +N     EQI+M+S+S+PLS W  +SY  YS++QN++  S+ Q+
Sbjct  540  SYSNTARQGTGNNHASDN---TSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQL  596

Query  600  GLNGTMLEGRNLSYNVQESWMHSPDDSYSGNAGMTYDGTYGSVNGSYSWSRDSQHFDYGA  659
            GL+GT LE  NLS N+ +S  +S DD  +GN ++TYDG+YG+VNGSY+ S++SQ+++YG 
Sbjct  597  GLSGTALERNNLSWNLMQSY-NSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGI  655

Query  660  RGGVLVHSDGVTFSQELGETVALVKAPGAEGLSIENATGISTDWRGYTVKTQLSPYDENR  719
            RGG+L HS+GVT+SQELGET+ALVKAPGA GL I+N  G +TDWRGYTVKTQL+PYDENR
Sbjct  656  RGGILAHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENR  715

Query  720  VALNSDYFSKANIELENTVINLVPTRGAVVKAEFVTHVGYRVLFNVRQVNGKPIMFGAMA  779
            VA++ +YFSK+NIEL+NTV+ +VPTRGAVVKAEFVTHVGYRVLF V + NGKP+ FGA+A
Sbjct  716  VAISDNYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIA  775

Query  780  TASLETGTVTGIVGDNGELYLSGMPEKGEFLLSWGQAADEKCKAAYHITHKPDDTSLVQM  839
            +    + + +GIVGD GELYLSG+PEKG+  LSWG+ A  KC   Y ++    +++L++ 
Sbjct  776  AIQDASLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQ  835

Query  840  DAICR  844
            +  C+
Sbjct  836  GVTCH  840

33) CDCO157_4403 in NC_017906


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score =  899 bits (3406),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 529/845 (63%), Positives = 707/845 (84%), Gaps = 6/845 (0%)

Query  1    MASSHLFITLASGICLLCSISAFARDSLFNPRLLELDHPADNIDIHQFNRSNTLPAGTYK  60
            M ++++ + L++G CL+ S +  A  S+FNP LLE++H +  +DI+QFNR+N +P+G Y 
Sbjct  1    MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEINHQS-GVDIRQFNRANLMPPGVYS  59

Query  61   VDVMINGMLFERQEVKFAQDNPDAELHPCYVAIKNVLATYGIKVDAIKSLANVDDKTCVN  120
            VD+ ING +FERQ+V F QDNPDA+LH+C++AIK+ L+++GIKVDA+KS+ +VD+  C++
Sbjct  60   VDIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLD  119

Query  121  PVPLIDGATWLLDASKLALNITIPQIYLNNAVNGYISPSRWDQGINAMMMNYDFSASHTI  180
            P P I+G++W +D+ KL LNI+I QIY++    +YISP+RWD+GINA+ +NYDFS+SHT+
Sbjct  120  PAPRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTL  179

Query  181  rsnydddddsyy-lnlrnGINLGAWRFRNYSTLNSYDGNVDYHSVSNYIQRDIMALRSQI  239
            RS+Y+ ++     LNLRNG+N+G+WR+RNYSTLN+ DG  +Y+S+S  IQRDI ALRSQI
Sbjct  180  RSDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQI  239

Query  240  MIGDTWTASDVFDSTQVRGVRLYTDDDMLPSSQNGFAPVVHGIAKTNATVIIKQNGYVIY  299
            MIGDTWTASD+FDSTQ+RG RLYTD+DMLP+SQNGFAPVV+GIAK+NATVII+QNGYVIY
Sbjct  240  MIGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIY  299

Query  300  QSAVPQGAFALTDLNTTSSGGDLDVTIKEEDGSEQHFIQPFTSLAILKREGQTDVDLSIG  359
            QSAVPQGAF +TDLNT+S+GGDLDVTIKEEDGSEQ+F QP++SLAILKREG TDVD+S+G
Sbjct  300  QSAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVG  359

Query  360  EVRDESGFTPEVLQLQAMHGFPLGITLYGGTQLANDYASAALGIGKDMGALGAISFDVTH  419
            E+RDE GFTP+VLQ Q +HGF+ GITLYGG Q A++Y+SAALG+GKD+GALGAISFDVTH
Sbjct  360  ELRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTH  419

Query  420  ARSQFDYDDNESGQSYRFLYSKRFEDTNTTFRLVGYRYSMEGFYTLNEWVSRQDNDSDFW  479
            AR++F  DD E+GQSYRFLYSK F+DT+T++RLVGYRYS EG+YTLNEW SR+++  DFW
Sbjct  420  ARANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFW  479

Query  480  VTGNRRSRFEGTWTQSFTPGWGNIYLTFSRQEYWQTDEVERLLQFGYNNNWRNISWNVSW  539
             TGNRRSR EGT TQS+  + GN+YLT+SRQ+YW+TD+VERL+QFGY+++W+ +SWNVSW
Sbjct  480  ETGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSW  539

Query  540  NYTDSIKRSLGnhhddnnddFGKEQIFMFSMSIPLSCWMEDSYVNYSLTQNNHHESTMQV  599
            +Y+++ +++ GN+H  +N     EQI+M+S+S+PLS W  +SY  YS++QN++  S+ Q+
Sbjct  540  SYSNTARQGTGNNHASDN---TSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQL  596

Query  600  GLNGTMLEGRNLSYNVQESWMHSPDDSYSGNAGMTYDGTYGSVNGSYSWSRDSQHFDYGA  659
            GL+GT LE  NLS N+ +S  +S DD  +GN ++TYDG+YG+VNGSY+ S++SQ+++YG 
Sbjct  597  GLSGTALERNNLSWNLMQSY-NSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGI  655

Query  660  RGGVLVHSDGVTFSQELGETVALVKAPGAEGLSIENATGISTDWRGYTVKTQLSPYDENR  719
            RGG+L HS+GVT+SQELGET+ALVKAPGA GL I+N  G +TDWRGYTVKTQL+PYDENR
Sbjct  656  RGGILAHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENR  715

Query  720  VALNSDYFSKANIELENTVINLVPTRGAVVKAEFVTHVGYRVLFNVRQVNGKPIMFGAMA  779
            VA++ +YFSK+NIEL+NTV+ +VPTRGAVVKAEFVTHVGYRVLF V + NGKP+ FGA+A
Sbjct  716  VAISDNYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIA  775

Query  780  TASLETGTVTGIVGDNGELYLSGMPEKGEFLLSWGQAADEKCKAAYHITHKPDDTSLVQM  839
            +    + + +GIVGD GELYLSG+PEKG+  LSWG+ A  KC   Y ++    +++L++ 
Sbjct  776  AIQDASLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQ  835

Query  840  DAICR  844
            +  C+
Sbjct  836  GVTCH  840

34) ENC_04120 in NC_021046


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score =  776 bits (2937),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 482/813 (60%), Positives = 668/813 (83%), Gaps = 8/813 (0%)

Query  21   TFNSRLLELEHPVDIDISQFSRPDNLPEGDYQVDIYINerfferreihffrTNNESALQP  80
             FN+ LLE++H  ++DI QF+R++ +P G Y VDI+IN + FER+++ F + N ++ L++
Sbjct  28   VFNPALLEINHQSGVDIRQFNRANLMPPGVYSVDIFINGKMFERQDVTFVQDNPDADLHA  87

Query  81   CFRDLKNTLATFGIKVDAIKALATINTSRC-EPVPPLAGATWVLDDEKLALRVSIPQIYM  139
            CF  +K+TL++FGIKVDA+K++  ++ + C +P P + G++W +D +KL L +SI QIYM
Sbjct  88   CFIAIKKTLSSFGIKVDALKSFNDVDETVCLDPAPRIEGSSWQFDSDKLQLNISIHQIYM  147

Query  140  DSSARDAIPPSRWDQGINALMVNYDFSTTQTLKsdydsddlyyl--NMRSGINLGSWRLR  197
            D+ A D I+P+RWD+GINAL +NYDFS ++TL+SDY+S++      N+R+G+N+G+WRLR
Sbjct  148  DAMAYDYISPTRWDEGINALTINYDFSGSHTLRSDYGSQETDTSYLNLRNGLNIGPWRLR  207

Query  198  NYSTLNAVNSNGSYHSASTYLQRDIASLRSQIMMGDTWTANDLFDSSQVRGVRLYTDNDM  257
            NYSTLN+ ++ + Y+S ST +QRDIA+LRSQIM+GDTWTA+D+FDS+Q+RG RLYTDNDM
Sbjct  208  NYSTLNTSDGRAEYNSISTWIQRDIAALRSQIMIGDTWTASDIFDSTQIRGARLYTDNDM  267

Query  258  LPDSLNGFAPVVRGIAKSNAVVTIRQNGYIIYQSAVPQGPFALTDLNTTSSGGDLDVTIK  317
            LP S NGFAPVVRGIAKSNA V IRQNGY+IYQSAVPQG+F +TDLNT+S+GGDLDVTIK
Sbjct  268  LPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQSAVPQGAFEITDLNTASTGGDLDVTIK  327

Query  318  EEDGSEQHFTQPYASLAILRREGQTDFDISIGELNNSDRYSPDLLQAQLLRGMQGGMTLY  377
            EEDGSEQ+FTQPYASLAIL+REG TD D+S+GEL + D ++PD+LQAQ+L+G   G+TLY
Sbjct  328  EEDGSEQRFTQPYASLAILKREGLTDVDVSVGELRDEDGFTPDVLQAQILHGFSHGITLY  387

Query  378  GGTQLAENYTAIAAGIGQELGEIGAISMDVTHAASRFV-DDTEQGQSWRFLYSKTFDVSN  436
            GG Q AENY + A G+G++LG +GAIS DVTHA + F  DDTE GQS RFLYSK FD ++
Sbjct  388  GGMQAAENYGSAALGVGKDLGALGAISFDVTHARANFSHDDTETGQSYRFLYSKLFDDTD  447

Query  437  TSLRIVGYRYSTEGFYTLDEWASRRSDSETFWQTGNRRSRLEGTWTQPFAQGYGNIYLTL  496
            TSLR+VGYRYSTEG+YTL+EWASRR+ +E FW+TGNRRSR+EGT TQ+++++YGN+YLTL
Sbjct  448  TSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWETGNRRSRVEGTLTQSLGRDYGNLYLTL  507

Query  497  SREQYWRTDNVARLIQIGYSNSWKQMTWNASWNYTDTANHHDG-DWEKDGENEHVFMlsl  555
            SR+QYW+TD+V RL+Q+GYS+SWK+++WN SW+Y++TA +  G +   D  +E+++MLSL
Sbjct  508  SRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWSYSNTARQGTGNNHASDNTSEQIYMLSL  567

Query  556  slplsQWLPNTYANYNVTGNNKNSVSHqvglngrllqnnnlnwniqqSVDESGGSTGGNA  615
            S+PLS W  N+YA Y+V+ N++++ SHQ+GL+G  L+ NNL+WN+ QS +  ++  GGN 
Sbjct  568  SVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSGTALERNNLSWNLMQSYNSHDDEVGGNM  627

Query  616  GLAWDAAYGSMKGNYAWSNETRSLNYGVSGGILLHSEGVTFSQEMGETVALVKAPGAAGL  675
            +L+ D++YG+++G+Y  S++++ LNYG+ GGIL HSEGVT+SQE+GET+ALVKAPGAAGL
Sbjct  628  SLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGILAHSEGVTLSQELGETIALVKAPGAAGL  687

Query  676  AVENSSGVATDWRGYTVKTQLSPYDENRIAIGDSDFASGNVELEKSVQNLVPTRGAVVKA  735
             ++N  G ATDWRGYTVKTQL+PYDENR+AI+D+ F+ +N+EL+++V  +VPTRGAVVKA
Sbjct  688  EIDNMRGAATDWRGYTVKTQLNPYDENRVAISDNYFSKSNIELDNTVVTMVPTRGAVVKA  747

Query  736  EFVTHIGYRILFNVHLSNGKPAPFGATGSATLDTGSVTGIVGEEGELYLSGLPEKGQFTL  795
            EFVTH+GYR+LF V  +NGKP PFGA ++    + + +GIVG+ GELYLSGLPEKGQ TL
Sbjct  748  EFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDASLADSGIVGDRGELYLSGLPEKGQVTL  807

Query  796  T--LNDGATCRAEYTLQ-QQPDAGLVQMPVTCR  825
            +   N ++ C  +Y++   ++++GL++  VTC+
Sbjct  808  SWGENASTKCIFNYSFSTPESESGLIEQGVTCH  840

35) ECENHK_00150 in NC_018405


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score =  754 bits (2852),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 472/814 (58%), Positives = 662/814 (82%), Gaps = 8/814 (0%)

Query  27   PLFNVRLLELDRPIEVDISQFNRPDNLPEGEYQVDIYVNDrfiarravrffrHDPESALA  86
            ++FN  LLE+++   VDI QFNR++ +P G Y VDI++N++ + R+ V F +++P++ L 
Sbjct  27   SVFNPALLEINHQSGVDIRQFNRANLMPPGVYSVDIFINGKMFERQDVTFVQDNPDADLH  86

Query  87   PCFVDVKNTLAMFGLKVNAIKALDTVNAEGC-EPVPVLPGAKWTLDSEKLALKVSIPQVY  145
            +CF+ +K+TL+ FG+KV+A+K+++ V+   C +P P + G+ W +DS+KL L++SI Q+Y
Sbjct  87   ACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDPAPRIEGSSWQFDSDKLQLNISIHQIY  146

Query  146  LDATARDAISPSRWDQGIDALMLNYDFSTTQTLKsdydsddlyyl--nlrsGLNIGGWRL  203
            +DA A D ISP+RWD+GI+AL +NYDFS ++TL+SDY+S++      NLR+GLNIG WRL
Sbjct  147  MDAMAYDYISPTRWDEGINALTINYDFSGSHTLRSDYGSQETDTSYLNLRNGLNIGPWRL  206

Query  204  RNYSALNAVNSRGNVRSLSTYLQHDIASLRSQAMAGDTWTASDLFDSSQVRGVRLYTDSD  263
            RNYS+LN+ ++R++  S+ST +Q+DIA+LRSQ M GDTWTASD+FDS+Q+RG RLYTD+D
Sbjct  207  RNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIMIGDTWTASDIFDSTQIRGARLYTDND  266

Query  264  MLPDSQNGFAPVVRGVAKTNAVVTIRQNGYMIYQSAVPQGPFALTDLNTTSSGGDLDVTI  323
            MLP SQNGFAPVVRG+AK+NA V IRQNGY+IYQSAVPQG+F +TDLNT+S+GGDLDVTI
Sbjct  267  MLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQSAVPQGAFEITDLNTASTGGDLDVTI  326

Query  324  KEEDGSEQHFVQPYASLAILRREGQTDVDISIGERRDNDRFMPEVMQAQVLHGMAWGMTL  383
            KEEDGSEQ+F QPYASLAIL+REG TDVD+S+GE RD+D F P+V+QAQ+LHG + G+TL
Sbjct  327  KEEDGSEQRFTQPYASLAILKREGLTDVDVSVGELRDEDGFTPDVLQAQILHGFSHGITL  386

Query  384  YGGTQLADDYRAFAAGIGKDLGNIGAISMDITHAQSHFTDDD-EQGQSWRFLYSKTFDVS  442
            YGG Q A++Y + A G+GKDLG +GAIS D+THA+++F++DD E GQS RFLYSK FD +
Sbjct  387  YGGMQAAENYGSAALGVGKDLGALGAISFDVTHARANFSHDDTETGQSYRFLYSKLFDDT  446

Query  443  NTSLRIVGYRYSTEGFYTLGEWASRTGDSENFWHTGNRRSRVEGTWTQPFSEGYGNVYLT  502
            +TSLR+VGYRYSTEG+YTL EWASR   +E+FW+TGNRRSRVEGT TQ+++ +YGN+YLT
Sbjct  447  DTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWETGNRRSRVEGTLTQSLGRDYGNLYLT  506

Query  503  LSREQFWRTDDVQRLIQIGYSNSWKQVVWNLSWNYTDTVSDSMGEWQQEDE-SEHLVMls  561
            LSR+Q+W+TDDV+RL+Q+GYS+SWK++ WN+SW+Y++T  ++ G+ +  D+ SE++ MLS
Sbjct  507  LSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWSYSNTARQGTGNNHASDNTSEQIYMLS  566

Query  562  lslplsawlpnsYVNYNYAHSNHGTPSHQIglngnllddnnlSWNIQQSVYENRGTSAGN  621
            LS+PLS+W  NSY  Y+ ++++++ +SHQ+GL+G  L+ NNLSWN+ QS   + +  +GN
Sbjct  567  LSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSGTALERNNLSWNLMQSYNSHDDEVGGN  626

Query  622  AGLVWDASYGSLKTNYAWSDESQSLNYGVSGGVLIHDEGITFSQEMGETVALIKAPGAAG  681
             +L  D+SYG+++ +Y  S++SQ LNYG+ GG+L H EG+T+SQE+GET+AL+KAPGAAG
Sbjct  627  MSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGILAHSEGVTLSQELGETIALVKAPGAAG  686

Query  682  LSVDNASGVATDWRGYTVKTQLSPYDENRIALQNKDFVSGNVELERSVQNLVPTRGAVVK  741
            L +DN  G ATDWRGYTVKTQL+PYDENR+A+ ++ F  +N+EL+ +V  +VPTRGAVVK
Sbjct  687  LEIDNMRGAATDWRGYTVKTQLNPYDENRVAISDNYFSKSNIELDNTVVTMVPTRGAVVK  746

Query  742  AEFVTHIGYRVLFSVSLANGKPAPFGAVGTAALDVGSATGIVGDKGELYLAGMPESGQFS  801
            AEFVTH+GYRVLF V  ANGKP PFGA+++      + +GIVGD+GELYL+G+PE GQ +
Sbjct  747  AEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDASLADSGIVGDRGELYLSGLPEKGQVT  806

Query  802  LT--LSSGKVCLADYHIH-QKPDSGLVQLPVICR  832
            L+   +++  C+ +Y +    ++SGL++  V C+
Sbjct  807  LSWGENASTKCIFNYSFSTPESESGLIEQGVTCH  840

36) Spro_2874 in NC_009832


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score =  517 bits (1951),  Expect = 1e-147, Method: Compositional matrix adjust.
 Identities = 339/820 (42%), Positives = 560/820 (69%), Gaps = 21/820 (2%)

Query  34   FNPALLTIGTPQQDGVDLSAFENAGGQIPGVYRVDIFLNQQMVATRSVTFHADPKGDGLQ  93
            FNPALL I   +Q GVD+  F+ A    PGVY VDIF+N +M   + VTF  D  + +L+
Sbjct  29   FNPALLEIN--HQSGVDIRQFNRANLMPPGVYSVDIFINGKMFERQDVTFVQDNPDADLH  86

Query  94   PCLS--MAELGDYGVQVSRFPTLGAADST-CVDLTAIPQASSRLQFNQQRLLLSIPQAAI  150
            +C+      L+ +G++V  + ++   D T C+D ++  ++SS+ QF+ ++L L+I+   I
Sbjct  87   ACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDPAPRIEGSSW-QFDSDKLQLNISIHQI  145

Query  151  KQQPRGY--VSPAQWDEGVPALLLNYSLSGANTYARNESGSNGNNQYANLRPGANLGPWR  208
              ++ +Y  +SP++WDEG+ AL +NY +SG++T   + ++ + +  Y NLR G N+GPWR
Sbjct  146  YMDAMAYDYISPTRWDEGINALTINYDFSGSHTLRSDYGSQETDTSYLNLRNGLNIGPWR  205

Query  209  LRNYTTWGRDSDGQDKWNTVYTYAQRNLIGLQSQMTLGDSNAPSEVFDAVPFRGGQLASD  268
            LRNY+T    SDG+   N++ T  QR++ +L+SQ+ +GD+ ++S++FD+  +RG++L +D
Sbjct  206  LRNYSTLN-TSDGRAEYNSISTWIQRDIAALRSQIMIGDTWTASDIFDSTQIRGARLYTD  264

Query  269  DDMLPDSLRGYAPIVRGIARTNAQVVVRQNGYEIYRTYVAPGAFVIDDMYPTGGSGDLHV  328
            +DMLP S  G+AP+VRGIA++NA V++RQNGY IY++ V+ GAF I D+  ++ +GDL+V
Sbjct  265  NDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQSAVPQGAFEITDLNTASTGGDLDV  324

Query  329  TIKEADGSEQQLVVPFASLPVLQREGRLKYSLTAGQYRSYDHSVDKSALMQGTAIYGLPW  388
            TIKE DGSEQ++  P+ASL++L+REG     ++ G+ R  D+    + ++Q+  + G++ 
Sbjct  325  TIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGELR--DEDGFTPDVLQAQILHGFSH  382

Query  389  NSTLYGGVQMAQRYQSAALGVGNNLGDWGAFSVDVTQSRGQQKGLDRQTGQSWRMRYSKN  448
              TLYGG+Q A+ Y SAALGVG++LG  GA+S DVT++R++    D +TGQS R  YSK 
Sbjct  383  GITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHARANFSHDDTETGQSYRFLYSKL  442

Query  449  MVQTGTNFAIAGYRYSTAGFYALSEVLDTWRSGEMAYWAYERRRNRAELSMSQQLWQDGG  508
              +T+T++ + GYRYST G+Y+L+E   ++R++   +W    RR+R E +++Q L +D G
Sbjct  443  FDDTDTSLRLVGYRYSTEGYYTLNE-WASRRNSPEDFWETGNRRSRVEGTLTQSLGRDYG  501

Query  509  SLSLSAIREDYWNSDRSMASLGLGYSNSWQGISYGVNWSYNR-------NSFGPQRSNDQ  561
            +L L+  R++YW++D     + +GYS+SW+ +S  V+WSY+        N+ +++ +++Q
Sbjct  502  NLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWSYSNTARQGTGNNHASDNTSEQ  561

Query  562  QIVFNLNMPLNLWDnnsswvnynlnnTKGGATSQSLGLSGMALRDNSLSWAAQQNYGSRG  621
              +++L++PL+ W  NS       +N ++G++ Q LGLSG AL  N+LSW   Q+Y S++
Sbjct  562  IYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQ-LGLSGTALERNNLSWNLMQSYNSHD  620

Query  622  QGYGGNLNLDYKGTYGELSSGYGYDRNSQRLNYGLQGSVVAHASGVTLGQPLGETAALVA  681
            +  GGN++L Y G+YG ++++Y Y +NSQRLNYG++G+++AH+ GVTL+Q LGET ALV 
Sbjct  621  DEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGILAHSEGVTLSQELGETIALVK  680

Query  682  MPGAAGVSVNNQTGVRTDWRGYALVPYLTPYRSTDVTLATETLS-ADTDVAQTSHRVVPT  740
             PGAAG+ ++N  G  TDWRGY++   L PY    V+++ + +S ++ ++ +T   +VPT
Sbjct  681  APGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISDNYFSKSNIELDNTVVTMVPT  740

Query  741  RGALVRATFSAKVGARALMTLTQGNGKPVPFGATVSEADQNAAQGSIVGDAGQVYLSGLA  800
            RGA+V+A F + VG R L  + ++NGKPVPFGA  +  D + A+++IVGD G++YLSGL+
Sbjct  741  RGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDASLADSGIVGDRGELYLSGLP  800

Query  801  EQGKLRVLWGNGNTGQCWVNYQLPTTPQPGGVVQINEVCR  840
            E+G++ + WG+  + +C  NY ++T    +G+++    C+
Sbjct  801  EKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVTCH  840

37) Y11_30771 in NC_017564


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score =  507 bits (1911),  Expect = 2e-144, Method: Compositional matrix adjust.
 Identities = 331/812 (41%), Positives = 558/812 (69%), Gaps = 33/812 (4%)

Query  7    FNSALLEIDNQQQSHTDLSVFEQEPNQASGTYRVDIYINNELLDTRDVVFSMQKNAVGKE  66
            FN+ALLEI+  +QS  D+  F++    ++G Y VDI+IN  +++ +DV F  ++      
Sbjct  29   FNPALLEIN--HQSGVDIRQFNRANLMPPGVYSVDIFINGKMFERQDVTFVQDNPD---A  83

Query  67   SLQPCLSA--KALAEIGVKIEA---FPQLGDGECADLSAIPQASA-EFRLSAQQLLIRIP  120
             L++C+ A  K+L+ +G+K++A   F ++++  C D ++  ++S+ +F     QL I I 
Sbjct  84   DLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDPAPRIEGSSWQFDSDKLQLNISIH  143

Query  121  QAAITDKARGYVEPSQWDDGITALLLNYSVSGAQnnprnsknndsnsQYANLRPGFNIGP  180
            Q  +   A +Y+ P++WD+GI AL +NY  SG++    +  ++++++ Y NLR G+NIGP
Sbjct  144  QIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLRSDYGSQETDTSYLNLRNGLNIGP  203

Query  181  WRLSSYITWNRSSGRQDQWDTVYTYVQRNIIALKSQLIFGDSNSLTDVFDGVPFRGVQLA  240
            WRL +Y T N S GR +  +++ T +QR+I AL+SQ+++GD+ + +D+FD+  +RG +L 
Sbjct  204  WRLRNYSTLNTSDGRAEY-NSISTWIQRDIAALRSQIMIGDTWTASDIFDSTQIRGARLY  262

Query  241  SDDDMVPDSLKGYAPVVRGIAHSNAEVTIRQNGYVVYQHFVAPGAFEITDMFLTGTSGDL  300
            +D+DM+P S +G+APVVRGIA SNA V IRQNGYV+YQ  V+ GAFEITD+  ++T+GDL
Sbjct  263  TDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQSAVPQGAFEITDLNTASTGGDL  322

Query  301  YVTVKEADGSEQLIVVPFASLPVLQREGRLKYALTGGQYR---SYNSRIERTPFVQGTGI  357
             VT+KE DGSEQ +  P+ASL++L+REG     ++ G+ R   ++ + +     +Q+  +
Sbjct  323  DVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGELRDEDGFTPDV-----LQAQIL  377

Query  358  YGLPYGITIYGGIQGASRYQSLACGLGDNLGTLGAVSVDVTHAQATMQNQPQRSGQSLRT  417
             G++ GIT+YGG+Q+A  Y S A G+G +LG+LGA+S DVTHA+A   ++   +GQS R 
Sbjct  378  HGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHARANFSHDDTETGQSYRF  437

Query  418  RYSKNIAQTGTNIAIAGYRYATAGYYNLQETLDSYRKGQNTALAERHRNRAEATMTQSLW  477
             YSK + +T+T++ + GYRY+T GYY L+E        ++   +  +R+R E+T+TQSL 
Sbjct  438  LYSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWETGNRRSRVEGTLTQSLG  497

Query  478  QEIGSVSLSLVNEGYWNSN--RRLQSYGVGYNNSWHKVSYGVNYSYNLNFMASSAGSGKK  535
            ++ G++ L+L  + YW+++   RL  +G  Y++SW ++S  V+ SY+    ++  G+G++
Sbjct  498  RDYGNLYLTLSRQQYWHTDDVERLMQFG--YSSSWKRLSWNVSWSYS---NTARQGTGNN  552

Query  536  YGKD----QVIAFNISVPLAILLGNTYASYTMNTSKKGSTTHIAGLKGTALASNNLSWSA  591
             + D    Q+  +++SVPL+   GN+YA+Y+++ + +++++H  GL GTAL  NNLSW+ 
Sbjct  553  HASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSGTALERNNLSWNL  612

Query  592  QQGYGSQRQGNSGNLAADYRGTYGEINAGYAYDNDMQRVNYGVQGGIVAHRDGVTFGQPL  651
             Q+Y S+ +  +GN++  Y G+YG +N++Y Y ++ QR+NYG++GGI+AH +GVT++Q L
Sbjct  613  MQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGILAHSEGVTLSQEL  672

Query  652  GETIALVKAPGAKAVELSSQNGVKTDYRGYAIVPYISPYRKNKIALNSATLS-DDVELNQ  710
            GETIALVKAPGA ++E+ +  G  TD RGY++   ++PY  N++A++   +S  ++EL++
Sbjct  673  GETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISDNYFSKSNIELDN  732

Query  711  NTQNVVPTRGAIVRASFVTQIGGRAMMTLLRPDGAPVPFGATVS-DMATKGQGFIVGDTG  769
                +VPTRGA+V+A FVT++G R +  +L ++G PVPFGA  + + A+ +++ IVGD G
Sbjct  733  TVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDASLADSGIVGDRG  792

Query  770  QVYLTGLADSGQLIVKWGHDTSQQCHVDYSLS  801
            ++YL+GL++ GQ+ + WG+++S +C  +YS+S
Sbjct  793  ELYLSGLPEKGQVTLSWGENASTKCIFNYSFS  824

38) A225_3439 in NC_018106


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score =  501 bits (1888),  Expect = 1e-142, Method: Compositional matrix adjust.
 Identities = 334/833 (41%), Positives = 571/833 (69%), Gaps = 24/833 (2%)

Query  24   FSPELYASDS-FNTALVELDNPGVGKADLSAFESGS-QAPGTYHVDIILDDQLMDTRDIP  81
            FS +L A  S FN AL+E+++ +    D+  F+ ++  +PG Y VDI++++++ + +D+ 
Sbjct  18   FSQNLMAEVSVFNPALLEINHQS--GVDIRQFNRANLMPPGVYSVDIFINGKMFERQDVT  75

Query  82   FSMAKNGGGNEVLQPCLSV--EQLKQWGVKTELFPQLS-VENSDCANLQAIPQ-ASADFQ  137
            F   + +++   L++C+      L   G+K + +  ++ V+++ C  L++ P+  ++  Q
Sbjct  76   FVQDNPDAD---LHACFIAIKKTLSSFGIKVDALKSFNDVDETVC--LDPAPRIEGSSWQ  130

Query  138  FGAQRLVISIPQAAIDLPARGY--VPPEMWDEGITAALLNYSLSGANTRAKTGQGGRSDS  195
            F++++L ++I+   I + A +Y  ++P  WDEGI A  +NY +SG++T      +  +D+
Sbjct  131  FDSDKLQLNISIHQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLRSDYGSQETDT  190

Query  196  QYANLRPGINIGPWRFRNYTTWSRESSGQDKWDTVYTYAQRAIIPLKAQLTVGDSSAPAD  255
             Y NLR G+NIGPWR+RNY+T    S G+   +++ T  QR I +L++Q+ +GD+ +++D
Sbjct  191  SYLNLRNGLNIGPWRLRNYST-LNTSDGRAEYNSISTWIQRDIAALRSQIMIGDTWTASD  249

Query  256  VFDSMPFRGGQLASDDDMLPDSLKGYAPVVRGIARTNAQVVVRQNGYQIYQSYVAPGAFE  315
            +FDS  +RG++L +D+DMLP S +G+APVVRGIA++NA V++RQNGY IYQS V+ GAFE
Sbjct  250  IFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQSAVPQGAFE  309

Query  316  ITDMYPTGGAGDLDVTIKEADGSEQHFTLPYASLPVLQREARFKYAITGGQYRSYNSSVD  375
            ITD+  ++ +GDLDVTIKE DGSEQ+FT PYASL++L+RE+     ++ G+ R  ++   
Sbjct  310  ITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGELRDEDGFTP  369

Query  376  KTPFGQTTAIYGLQHGFTLYGGLQESSKYQSLAFGVGKNMGALGAISTDVTQAWSTPDKT  435
                 Q+  + G+ HG+TLYGG+Q + +Y S A+GVGK++GALGAIS DVT+A++     
Sbjct  370  DVL--QAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHARANFSHD  427

Query  436  DKSRGQSWRARYSKNFIDTGTNFSIAGYRYSTSGYYGMQEVLDSYGDSSAL--QDRRRNR  493
            D   GQS R  YSK F DT+T++ + GYRYST GYY ++E       +  +   + RR+R
Sbjct  428  DTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWETGNRRSR  487

Query  494  AELTMSQTLSRELGSLTLSAAREDYWNSARSMASWSVGYNNYWRNISYGLTWTYSKng-s  552
             E T++Q+L+R+ G+L L+ +R++YW++         GY++ W+ +S  ++W+YS+ +  
Sbjct  488  VEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWSYSNTARQ  547

Query  553  atsndsasnsaHDQLLAFNVSVPLDKFLPQTWASYGMNASKNGGTTHNIGMNGVALENNS  612
            +T+N+ AS+++ +Q+  +++SVPL     ++ A+Y+++ + N+G++H++G++G ALE N+
Sbjct  548  GTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSGTALERNN  607

Query  613  LNWNVQQGYGTDGVGYTGNMNGDYKGTYGEVTAGYSYDKNSERLNYGLQGGVIAHADGIT  672
            L+WN+ Q+Y +++    GNM+  Y G+YG V ++Y+Y +NS+RLNYG++GG++AH++G+T
Sbjct  608  LSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGILAHSEGVT  667

Query  673  LSQPLGETNALIKAPGAHGVNIRNQPGARTDYRGYTVVSNISVYRKNDLTLDPQNMPE-D  731
            LSQ LGET AL+KAPGA G++I N  GA TD RGYTV ++++ Y  N +++  +  +  +
Sbjct  668  LSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISDNYFSKSN  727

Query  732  VELEINTDTVTPTRGAVVRADYLSKVGRRVLM-TLTDNNRFVPFGAVVTLADDN-KSSFI  789
            +EL+    T+ PTRGAVV+A++++ VG RVL   L  N + VPFGA+ ++ D +   S I
Sbjct  728  IELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDASLADSGI  787

Query  790  VGDRGQVFLSGMREQGAIIVTWGRESSQQCRADFSLPKQSTYAGITEVSASCH  842
            VGDRG+++LSG+ E+G + ++WG ++S +C  ++S++   + +G+ E + +CH
Sbjct  788  VGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVTCH  840

39) KOX_22805 in NC_016612


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score =  501 bits (1888),  Expect = 1e-142, Method: Compositional matrix adjust.
 Identities = 334/833 (41%), Positives = 571/833 (69%), Gaps = 24/833 (2%)

Query  24   FSPELYASDS-FNTALVELDNPGVGKADLSAFESGS-QAPGTYHVDIILDDQLMDTRDIP  81
            FS +L A  S FN AL+E+++ +    D+  F+ ++  +PG Y VDI++++++ + +D+ 
Sbjct  18   FSQNLMAEVSVFNPALLEINHQS--GVDIRQFNRANLMPPGVYSVDIFINGKMFERQDVT  75

Query  82   FSMAKNGGGNEVLQPCLSV--EQLKQWGVKTELFPQLS-VENSDCANLQAIPQ-ASADFQ  137
            F   + +++   L++C+      L   G+K + +  ++ V+++ C  L++ P+  ++  Q
Sbjct  76   FVQDNPDAD---LHACFIAIKKTLSSFGIKVDALKSFNDVDETVC--LDPAPRIEGSSWQ  130

Query  138  FGAQRLVISIPQAAIDLPARGY--VPPEMWDEGITAALLNYSLSGANTRAKTGQGGRSDS  195
            F++++L ++I+   I + A +Y  ++P  WDEGI A  +NY +SG++T      +  +D+
Sbjct  131  FDSDKLQLNISIHQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLRSDYGSQETDT  190

Query  196  QYANLRPGINIGPWRFRNYTTWSRESSGQDKWDTVYTYAQRAIIPLKAQLTVGDSSAPAD  255
             Y NLR G+NIGPWR+RNY+T    S G+   +++ T  QR I +L++Q+ +GD+ +++D
Sbjct  191  SYLNLRNGLNIGPWRLRNYST-LNTSDGRAEYNSISTWIQRDIAALRSQIMIGDTWTASD  249

Query  256  VFDSMPFRGGQLASDDDMLPDSLKGYAPVVRGIARTNAQVVVRQNGYQIYQSYVAPGAFE  315
            +FDS  +RG++L +D+DMLP S +G+APVVRGIA++NA V++RQNGY IYQS V+ GAFE
Sbjct  250  IFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQSAVPQGAFE  309

Query  316  ITDMYPTGGAGDLDVTIKEADGSEQHFTLPYASLPVLQREARFKYAITGGQYRSYNSSVD  375
            ITD+  ++ +GDLDVTIKE DGSEQ+FT PYASL++L+RE+     ++ G+ R  ++   
Sbjct  310  ITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGELRDEDGFTP  369

Query  376  KTPFGQTTAIYGLQHGFTLYGGLQESSKYQSLAFGVGKNMGALGAISTDVTQAWSTPDKT  435
                 Q+  + G+ HG+TLYGG+Q + +Y S A+GVGK++GALGAIS DVT+A++     
Sbjct  370  DVL--QAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHARANFSHD  427

Query  436  DKSRGQSWRARYSKNFIDTGTNFSIAGYRYSTSGYYGMQEVLDSYGDSSAL--QDRRRNR  493
            D   GQS R  YSK F DT+T++ + GYRYST GYY ++E       +  +   + RR+R
Sbjct  428  DTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWETGNRRSR  487

Query  494  AELTMSQTLSRELGSLTLSAAREDYWNSARSMASWSVGYNNYWRNISYGLTWTYSKng-s  552
             E T++Q+L+R+ G+L L+ +R++YW++         GY++ W+ +S  ++W+YS+ +  
Sbjct  488  VEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWSYSNTARQ  547

Query  553  atsndsasnsaHDQLLAFNVSVPLDKFLPQTWASYGMNASKNGGTTHNIGMNGVALENNS  612
            +T+N+ AS+++ +Q+  +++SVPL     ++ A+Y+++ + N+G++H++G++G ALE N+
Sbjct  548  GTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSGTALERNN  607

Query  613  LNWNVQQGYGTDGVGYTGNMNGDYKGTYGEVTAGYSYDKNSERLNYGLQGGVIAHADGIT  672
            L+WN+ Q+Y +++    GNM+  Y G+YG V ++Y+Y +NS+RLNYG++GG++AH++G+T
Sbjct  608  LSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGILAHSEGVT  667

Query  673  LSQPLGETNALIKAPGAHGVNIRNQPGARTDYRGYTVVSNISVYRKNDLTLDPQNMPE-D  731
            LSQ LGET AL+KAPGA G++I N  GA TD RGYTV ++++ Y  N +++  +  +  +
Sbjct  668  LSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISDNYFSKSN  727

Query  732  VELEINTDTVTPTRGAVVRADYLSKVGRRVLM-TLTDNNRFVPFGAVVTLADDN-KSSFI  789
            +EL+    T+ PTRGAVV+A++++ VG RVL   L  N + VPFGA+ ++ D +   S I
Sbjct  728  IELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDASLADSGI  787

Query  790  VGDRGQVFLSGMREQGAIIVTWGRESSQQCRADFSLPKQSTYAGITEVSASCH  842
            VGDRG+++LSG+ E+G + ++WG ++S +C  ++S++   + +G+ E + +CH
Sbjct  788  VGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVTCH  840

40) YE105_C3834 in NC_015224


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score =  495 bits (1865),  Expect = 7e-141, Method: Compositional matrix adjust.
 Identities = 333/812 (42%), Positives = 559/812 (69%), Gaps = 33/812 (4%)

Query  35   FNSALLEIDNQQQSHTDLSVFEQEPNQASGTYRVDIYINNELLDTRDVVFSMQKNAVGKE  94
            FN+ALLEI+  +QS  D+  F++    ++G Y VDI+IN  +++ +DV F  ++   +  
Sbjct  29   FNPALLEIN--HQSGVDIRQFNRANLMPPGVYSVDIFINGKMFERQDVTFVQDNPDAD--  84

Query  95   SLQPCLSA--KALAEIGVKIEA---FPQLGDGECADLSAIPQASA-EFRLSAQQLLIRIP  148
             L++C+ A  K+L+ +G+K++A   F ++++  C D ++  ++S+ +F     QL I I 
Sbjct  85   -LHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDPAPRIEGSSWQFDSDKLQLNISIH  143

Query  149  QAAITDKARGYVEPSQWDDGITALLLNYSVSGAQnnprnsknndsnsQYANLRPGFNIGP  208
            Q  +   A +Y+ P++WD+GI AL +NY  SG++    +  ++++++ Y NLR G+NIGP
Sbjct  144  QIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLRSDYGSQETDTSYLNLRNGLNIGP  203

Query  209  WRLSSYITWNRSSGRQDQWDTVYTYVQRNIIALKSQLIFGDSNSLTDVFDGVPFRGVQLA  268
            WRL +Y T N S GR +  +++ T +QR+I AL+SQ+++GD+ + +D+FD+  +RG +L 
Sbjct  204  WRLRNYSTLNTSDGRAEY-NSISTWIQRDIAALRSQIMIGDTWTASDIFDSTQIRGARLY  262

Query  269  SDDDMVPDSLKGYAPVVRGIAHSNAEVTIRQNGYVVYQHFVAPGAFEITDMFLTGTSGDL  328
            +D+DM+P S +G+APVVRGIA SNA V IRQNGYV+YQ  V+ GAFEITD+  ++T+GDL
Sbjct  263  TDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQSAVPQGAFEITDLNTASTGGDL  322

Query  329  YVTVKEADGSEQLIVVPFASLPVLQREGRLKYALTGGQYR---SYNSRIERTPFVQGTGI  385
             VT+KE DGSEQ +  P+ASL++L+REG     ++ G+ R   ++ + +     +Q+  +
Sbjct  323  DVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGELRDEDGFTPDV-----LQAQIL  377

Query  386  YGLPYGITIYGGIQGASRYQSLACGLGDNLGTLGAVSVDVTHAQATMQNQPQRSGQSLRT  445
             G++ GIT+YGG+Q+A  Y S A G+G +LG+LGA+S DVTHA+A   ++   +GQS R 
Sbjct  378  HGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHARANFSHDDTETGQSYRF  437

Query  446  RYSKNIAQTGTNIAIAGYRYATAGYYNLQETLDSYRKGQntalaerrrnraeatMTQSLW  505
             YSK + +T+T++ + GYRY+T GYY L+E        ++   +  RR+R E+T+TQSL 
Sbjct  438  LYSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWETGNRRSRVEGTLTQSLG  497

Query  506  QEIGSVSLSLVNEGYWNSN--RRLQSYGVGYNNSWHKVSYGVNYSYNLNFMASSAGSGKK  563
            ++ G++ L+L  + YW+++   RL  +G  Y++SW ++S  V+ SY+    ++  G+G++
Sbjct  498  RDYGNLYLTLSRQQYWHTDDVERLMQFG--YSSSWKRLSWNVSWSYS---NTARQGTGNN  552

Query  564  YGKD----QVIAFNISVPLAILLGNTYASYTMNTSKKGSTTHIAGLKGTALASNNLSWSA  619
             + D    Q+  +++SVPL+   GN+YA+Y+++ + +++++H  GL GTAL  NNLSW+ 
Sbjct  553  HASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSGTALERNNLSWNL  612

Query  620  QQGYGSQRQGNSGNLAADYRGTYGEINAGYAYDNDMQRVNYGVQGGIVAHRDGVTFGQPL  679
             Q+Y S+ +  +GN++  Y G+YG +N++Y Y ++ QR+NYG++GGI+AH +GVT++Q L
Sbjct  613  MQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGILAHSEGVTLSQEL  672

Query  680  GETIALVKAPGAKAVELSSQNGVKTDYRGYAIVPYISPYRKNKIALNSATLS-DDVELNQ  738
            GETIALVKAPGA ++E+ +  G  TD RGY++   ++PY  N++A++   +S  ++EL++
Sbjct  673  GETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISDNYFSKSNIELDN  732

Query  739  NTQNVVPTRGAVVRASFVTQIGGRAMMTLLRPDGAPVPFGATVS-DMATKGQGFIVGDTG  797
                +VPTRGAVV+A FVT++G R +  +L ++G PVPFGA  + + A+ +++ IVGD G
Sbjct  733  TVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDASLADSGIVGDRG  792

Query  798  QVYLTGLADSGQLIVKWGHDTSQQCHVDYSLS  829
            ++YL+GL++ GQ+ + WG+++S +C  +YS+S
Sbjct  793  ELYLSGLPEKGQVTLSWGENASTKCIFNYSFS  824

41) ECENHK_06965 in NC_018405


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score =  493 bits (1859),  Expect = 2e-140, Method: Compositional matrix adjust.
 Identities = 332/824 (41%), Positives = 554/824 (68%), Gaps = 24/824 (2%)

Query  16   FSQQTRAD-DYFNPALLDVDNPQQGKTDLSIYEKGPGQAPGKYQVTIFINNNKIDTRDVT  74
            FSQ+  A+   FNPALL+++  +Q+  D+  ++++   +PG Y V IFIN + ++ +DVT
Sbjct  18   FSQNLMAEVSVFNPALLEIN--HQSGVDIRQFNRANLMPPGVYSVDIFINGKMFERQDVT  75

Query  75   FILQKQDNGENSLQPCFTL--SDLKSLGIKTDDYPQLAVKGSCADLHAIPAATAT---FR  129
            F+   QDN +  L++CF      L S+GIK D    +   +    L++ P   ++   F 
Sbjct  76   FV---QDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDPAPRIEGSSWQFD  132

Query  130  VSNQQLLLSIPQSALGQVPRGYIDPTEFDEGITAGILNYsasasqsharqqGMQDNSSQY  189
              + QL +SI Q  ++ ++ +YI PT  DEGI A  +NY  S+S++   + G Q+  + Y
Sbjct  133  SDKLQLNISIHQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLRSDYGSQETDTSY  192

Query  190  VNLRPGLNVGAWRLRNYSTWSRSTSGHEEEQSFNSVYTYAQRDIVALKSDLTVGQSSSPA  249
            +NLR GLN+G+WRLRNYST   ++ G+ E   +NS+ T  QRDI AL+S++ +G++ +++
Sbjct  193  LNLRNGLNIGPWRLRNYST-LNTSDGRAE---YNSISTWIQRDIAALRSQIMIGDTWTAS  248

Query  250  DVFDSVPYTGAQLNSDNDMLPDSEKGYAPIIRGTAHSNALVVVRQNGYVIYQNTVAPGAF  309
            D+FDS    GA+L +DNDMLP S++G+AP++RG A SNA V++RQNGYVIYQ++V+ GAF
Sbjct  249  DIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQSAVPQGAF  308

Query  310  EINDLYPTGSSGDLQVTVKETDGSERHFVVPYASVPVLQREKHLKYSVTAGRYRSYDKDV  369
            EI DL  ++++GDL+VT+KE DGSE++F  PYAS+++L+RE      V+ G  R  D D 
Sbjct  309  EITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGELR--DEDG  366

Query  370  EKTPFAQGSAIYGLPYGFTAYGGVQQSSHYQSQALGTGKNFGDLGAFSVDVTRakallkk  429
                  Q+  + G++ G+T YGG+Q + +Y S ALG GK++G LGA+S DVT+A+A +  
Sbjct  367  FTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHARANFSH  426

Query  430  qqaSKGQSWRLRYSKDFAGTGTNFALAGYRYNSKGFYTLEDTMESYTRADDWSAPQQRRA  489
            +++  GQS R+ YSK F +T+T++ L GYRY++ G+YTL++       ++D     +RR+
Sbjct  427  DDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWETGNRRS  486

Query  490  RTEATIDQTLGEGWGSFTLSLVKETYWNQGQDMTSMSVSYNNSWKGITYSM--SYSLNKN  547
            R E+T+ Q+LG + G++ L+L ++ YW+ ++    M  +Y++SWK ++ ++  SYS    
Sbjct  487  RVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWSYSNTAR  546

Query  548  TNSRDDEGDSVSNDNLFALSVSVPLDRWMSNTWASYNMN-NNKDGTTHTLGLNGTALEEN  606
              + ++++   ++++++ LS+SVPL  W +N+ A+Y+++ N++ G++H LGL+GTALE N
Sbjct  547  QGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSGTALERN  606

Query  607  NLNWNVQEGYDSSENGTSTSLNADYKATYGEVSGGFSQDKYQRTTNVGLQGGMIAHANGL  666
            NL+WN+ ++Y+S ++  + +++  Y ++YG V+G+++  +  +  N G++GG++AH++G+
Sbjct  607  NLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGILAHSEGV  666

Query  667  TLSQPLGETIALVKAPGASGTHIANQTGVETDFRGYTVVPFVTAYRHNTISLDTETLP-D  725
            TLSQ LGETIALVKAPGA+G +I N  G  TD RGYTV   + +Y +N +++  + ++  
Sbjct  667  TLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISDNYFSKS  726

Query  726  EADVTHASQIVTPTRGAVVRASFNTRVGHRVLM-TLTHNGKPLPFGATVTTEDK--DSEF  782
            + ++ ++   + PTRGAVV+A F T+VG RVL   L  NGKP+PFGA  + +D       
Sbjct  727  NIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDASLADSG  786

Query  783  IVGTDGQTYLSGMPDRGKLSVSWGQEASDHCVAEYTLTDEKREN  826
            IVG  G+ YLSG+P++G++++SWG++AS  C+ +Y+++    E+
Sbjct  787  IVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSFSTPESES  830

42) ESA_01974 in NC_009778


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score =  490 bits (1849),  Expect = 1e-139, Method: Compositional matrix adjust.
 Identities = 328/811 (41%), Positives = 552/811 (69%), Gaps = 27/811 (3%)

Query  2    KGADLSSFESGT-QAPGTYRVDIIINDQTVDTRDIEFKTLRDTSGQERLEPCLPIAL---  57
             G D+  F+ +   +PG Y VDI+IN++  + +D+ F  ++D ++ + L++C+ IA+   
Sbjct  40   SGVDIRQFNRANLMPPGVYSVDIFINGKMFERQDVTF--VQDNPDAD-LHACF-IAIKKT  95

Query  58   LQSYGVKTTLFPELNADGKCARLSAIPK-ASSEFLFNAQKLVLSIP--QAALSPQARGYV  114
            L S+G+K   +  +N  +    L + P+  +S   F+++KL L+I+  Q  + + A +Y+
Sbjct  96   LSSFGIKVDALKSFNDVDETVCLDPAPRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYI  155

Query  115  DPALWDEGIPAAMLNYSMSGANNYADK--GANSNSQYANLRPGINLGAWRLRNYTTWNRD  172
             P+ WDEGI A  +NY  SG++       + ++++ Y NLR G+N+G+WRLRNY+T N  
Sbjct  156  SPTRWDEGINALTINYDFSGSHTLRSDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTS  215

Query  173  EKGKDKWDTVYTYLQRNIVPLKAKLVAGDSSSPADVFDSISFRGAQLASDDDMIPESQRG  232
            + G+   +++ T +QR+I +L+++++ GD+ +++D+FDS  +RGA+L +D+DM+P SQ G
Sbjct  216  D-GRAEYNSISTWIQRDIAALRSQIMIGDTWTASDIFDSTQIRGARLYTDNDMLPASQNG  274

Query  233  YAPVVRGVARTNAQIVIRQNGYVIYQSYVAAGAFEITDMYSTGGAGDLNVTVKEADGSEQ  292
            +APVVRG+A++NA ++IRQNGYVIYQS V+ GAFEITD+ +++ +GDL+VT+KE DGSEQ
Sbjct  275  FAPVVRGIAKSNATVIIRQNGYVIYQSAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQ  334

Query  293  HFVVPFASLPVLQREGRLKYALTGGQYR---SYDSSVEKTPFAQFTGIFGLPRGFTLYGG  349
            +F  P+ASL++L+REG     ++ G+ R   ++ + V ++ + +     G+++G+TLYGG
Sbjct  335  RFTQPYASLAILKREGLTDVDVSVGELRDEDGFTPDVLQAQILH-----GFSHGITLYGG  389

Query  350  LQEASKYQALALGLGKNMGAIGAISADVIQAWSRLKDMEKSSGQSWRIRYSKDFVETGTN  409
            +Q A +Y + ALG+GK++GA+GAIS DV +A++ + + +  +GQS R+ YSK F +T+T+
Sbjct  390  MQAAENYGSAALGVGKDLGALGAISFDVTHARANFSHDDTETGQSYRFLYSKLFDDTDTS  449

Query  410  FSIAGYRYSTAGFYSMQEVLDSYGNNSAMLD--RRRNRAElsisqslggslgslTASAVR  467
            + + GYRYST G+Y+++E      +     +   RR+R E +++QSLG   G+L  +  R
Sbjct  450  LRLVGYRYSTEGYYTLNEWASRRNSPEDFWETGNRRSRVEGTLTQSLGRDYGNLYLTLSR  509

Query  468  EDYWGKNKTMESYNVGYNNSWRGISYGLTYTYSKNGSAGN-YNNSVSYDKDQIIALNISV  526
            ++YW  +      + GY++SW+ +S  ++ +YS+ +  G   N++     +QI  L++SV
Sbjct  510  QQYWHTDDVERLMQFGYSSSWKRLSWNVSWSYSNTARQGTGNNHASDNTSEQIYMLSLSV  569

Query  527  PLERFLSNTWANYSMNDSKNNGTTHTAGMSGMALENNALSWNVQQGYGSDDVGYSGNMNA  586
            PL    +N+ A YS++++ N+G++H  G+SG ALE N LSWN+ Q+Y S+D   +GNM+ 
Sbjct  570  PLSGWWGNSYATYSVSQNDNSGSSHQLGLSGTALERNNLSWNLMQSYNSHDDEVGGNMSL  629

Query  587  DYKGTYGEMTAGYSYDKNGERLNYGLQGGILAHEDGITLSQPLGETNVLVKAPGAGGVSI  646
             Y G+YG + ++Y+Y +N++RLNYG++GGILAH +G+TLSQ LGET  LVKAPGA+G+ I
Sbjct  630  TYDGSYGTVNGSYNYSQNSQRLNYGIRGGILAHSEGVTLSQELGETIALVKAPGAAGLEI  689

Query  647  QNQTGAKTDFRGYTTVSNVTPYRKNDVTLNTESMP-DDVDLELTSRTVVPTRGAVVRAEY  705
            +N  GA TD RGYT  +++ PY  N V+++ +  +  +++L+ T  T+VPTRGAVV+AE+
Sbjct  690  DNMRGAATDWRGYTVKTQLNPYDENRVAISDNYFSKSNIELDNTVVTMVPTRGAVVKAEF  749

Query  706  VANVGLRVLMTLLQANGQPVPFGATVTVPGQH-NQGFIVGDKGQVYITGLQPEGTLNVQW  764
            V++VG RVL  +L+ANG+PVPFGA  ++ +    ++ IVGD+G++Y++GL   G + + W
Sbjct  750  VTHVGYRVLFRVLNANGKPVPFGAIAAIQDASLADSGIVGDRGELYLSGLPEKGQVTLSW  809

Query  765  GQTNNEMCGVNYHLPETETTSGILTFNGHCK  795
            G+  +  C  NY ++  E+ SG++     C 
Sbjct  810  GENASTKCIFNYSFSTPESESGLIEQGVTCH  840

43) D781_3602 in NC_020064


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score =  489 bits (1844),  Expect = 3e-139, Method: Compositional matrix adjust.
 Identities = 345/819 (43%), Positives = 547/819 (67%), Gaps = 16/819 (1%)

Query  41   FNPALLEIDNPDQRGVDLSVFEAGDTQAPGKYRVDIYVNREMVETRDIDFFLSRDRSGRN  100
            FNPALLEI++  Q GVD+  F+ ++  +PG Y VDI++N  M E +D+ F    + +   
Sbjct  29   FNPALLEINH--QSGVDIRQFNRANLMPPGVYSVDIFINGKMFERQDVTFV---QDNPDA  83

Query  101  SLQPCLDS--ELLEALGVRVDAIPAITSGGK--CVDIAQVIPQASSTFRFNQQRLELSIP  156
             L++C+ +    L ++G++VDA+ ++   +   C+D A  I  +S  F  ++ +L++SI 
Sbjct  84   DLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDPAPRIEGSSWQFDSDKLQLNISIH  143

Query  157  QAALKIRARGYVSPKKWNSGIPALLANYSFSGANNKARRGDGRDSDSYYLNLRSGLNLGA  216
            Q  +   A +Y+SP +W+ GI AL  NY FSG++      +++++D+ YLNLR+GLN+G+
Sbjct  144  QIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLRSDYGSQETDTSYLNLRNGLNIGP  203

Query  217  WRLRNYSTWNRDSNGEKQWRSINTYLQRDIIALKSRLTLGdsssssdvfdsMPFRGAQLA  276
            WRLRNYST    S+G  +  SI+T +QRDI AL+S++ +GD+ ++SD+FDS  +RGA+L 
Sbjct  204  WRLRNYST-LNTSDGRAEYNSISTWIQRDIAALRSQIMIGDTWTASDIFDSTQIRGARLY  262

Query  277  SDDDMLPDSMKGYAPVVRGIAKSNAQVTIRQNGYVIYQSYVSPGPFEINDLYPTSGSGDL  336
            +D+DMLP S +G+APVVRGIAKSNA V IRQNGYVIYQS V+ G+FEI DL  +S +GDL
Sbjct  263  TDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQSAVPQGAFEITDLNTASTGGDL  322

Query  337  KVTIKEADGSEQNITVPFASVPVLQREGRFKYNIASGQFRSNLNDVDKRPFTQATGIYGL  396
             VTIKE DGSEQ +T P+AS+++L+REG    +++ G++R +  D       QA  + G+
Sbjct  323  DVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGELRDE--DGFTPDVLQAQILHGF  380

Query  397  PWGATLYGGIQAASKYQALALGWGQNLGLLGALSADVTQAWTKPELQPKEHGQSWRLRYG  456
            + G TLYGG+QAA +Y + ALG G++LG LGA+S DVT+A+++   +  E GQS R+ Y+
Sbjct  381  SHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHARANFSHDDTETGQSYRFLYS  440

Query  457  KSFAETGTSFSLASYRYSTKGFYTMQEALETYTNGASIRFPLHKKSRSELTMNQNLWEGA  516
            K F +T+TS+ L +YRYST G+YT++E      +   ++   +++SR E T+ Q+L  + 
Sbjct  441  KLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWETGNRRSRVEGTLTQSLGRDY  500

Query  517  GALSLSLMNEEFWNDSRRSQSASVGYNNSWSGVSYGLYYTY---AKNGYNSDGYRTNNED  573
            G L L+L  +++W+     +    GY++SW  +S  +  +Y   A++G  ++    N  +
Sbjct  501  GNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWSYSNTARQGTGNNHASDNTSE  560

Query  574  HIVAFNVSVPLSRWLPGANATYSVNSSRNGNTSNRVGLHGTALERRNLSYSISQGYTSQG  633
            +I  +++SVPLS W   + ATYSV+ + N+ +S+++GL GTALER NLS ++ Q+Y S++
Sbjct  561  QIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSGTALERNNLSWNLMQSYNSHD  620

Query  634  QGASGNANVDYRGGLGQASVGYGYDRDMQRLSYGLQGGIVLHENGLTLSQPLGDTIALVK  693
            +  +GN ++ Y G+ G  + +Y Y ++ QRL+YG++GGI+ H +G+TLSQ LG+TIALVK
Sbjct  621  DEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGILAHSEGVTLSQELGETIALVK  680

Query  694  APGAKGVRIQNQTGVSTDWRGYAIVPYQSPYRRNNINLDTTTLP-DDVDIALTSQSVVPT  752
            APGA G+ I+N  G +TDWRGY++    +PY  N + +    ++  ++++  T  ++VPT
Sbjct  681  APGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISDNYFSKSNIELDNTVVTMVPT  740

Query  753  RGAVVRAEFKANIGQRVLMTLLRQGGAAVPFGATVTDLLNPDNSAAIVGDSGQVYLSGLT  812
            RGAVV+AEF +++G RVL  +L   G +VPFGA  +    +   ++IVGD G++YLSGL 
Sbjct  741  RGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDASLADSGIVGDRGELYLSGLP  800

Query  813  DSGKLNVKWGNGASQQCQVTYSLGAPVQNSTIRTANAQC  851
            + G++ + WG+ AS +C   YS+++P  +S +      C
Sbjct  801  EKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVTC  839

44) M621_20495 in NC_021659


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score =  489 bits (1842),  Expect = 5e-139, Method: Compositional matrix adjust.
 Identities = 338/838 (41%), Positives = 566/838 (68%), Gaps = 32/838 (3%)

Query  17   ACLFSCQAILLNSPSVAQARDYFNPALLEIDNPALRGADLSVFEENSTQAPGSYRVDLYL  76
            +CL+  Q  L+   SV      FNPALLEI++ +  G D+  F+  +  +PG Y VD+++
Sbjct  14   TCLIFSQN-LMAEVSV------FNPALLEINHQS--GVDIRQFNRANLMPPGVYSVDIFI  64

Query  77   NGQQVDSLDVEFRLQQDAAGKKTLQPCLSAEK--LTELGVRLNSLPAIAGSDDCINLEQA  134
            NG+  +  DV F +Q+++ +   L++C+ A K  L+ +G+++++L ++ + D+ + L+ A
Sbjct  65   NGKMFERQDVTF-VQDNPDAD--LHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDPA  121

Query  135  IPQAKATFLFN--QLRLNLSIPQAALNLHARDYVSPDKWDAGVPALLVNYSFSGANSQVS  192
                 ++  F+  +L+LN+SI Q  ++  A DY+SP +WD G+ AL +NY FSG+++  S
Sbjct  122  PRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLRS  181

Query  193  ESKGQGNDNYYLNLRSGINWGAWRLRNYSVWNQHSGGASSWRSINTYLQRDIIALQSRLT  252
            +  +Q  D  YLNLR+G+N G+WRLRNYS   + S+G +   SI+T +QRDI AL+S++ 
Sbjct  182  DYGSQETDTSYLNLRNGLNIGPWRLRNYST-LNTSDGRAEYNSISTWIQRDIAALRSQIM  240

Query  253  LGdsttssdvfdsvQFRGGQLASEDEILPDSMKGYSPIVRGIARSNAQIVIRQNGYVIYQ  312
            +GD+ T+SD+FDS Q+RG++L +++++LP S +G++P+VRGIA+SNA ++IRQNGYVIYQ
Sbjct  241  IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ  300

Query  313  SYVAPGAFEITDLYPTGGSGDLNVSVREANGQEQNFVVPYAVVPVLQREGRFKYSLTSGT  372
            S V+ GAFEITDL  ++ +GDL+V+++E +G EQ F  PYA +++L+REG     ++ G 
Sbjct  301  SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGE  360

Query  373  YRSYGSEVDERPFS----QATGIYGLPWGATLYGGIQAASKYQALALGWGQNLGAVGALS  428
             R      DE  F+    QA  + G++ G TLYGG+QAA +Y + ALG G++LGA+GA+S
Sbjct  361  LR------DEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAIS  414

Query  429  ADVTQAWTKQETQPKDQGQSWRLRYGKNVIETGTNFSLASYRYSTRGFYTLQE-ALESYG  487
             DVT+A+++   +  + GQS R+ Y+K   +T+T++ L +YRYST G+YTL+E A    +
Sbjct  415  FDVTHARANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNS  474

Query  488  GNSVKYNDHKKSRAELILSQNLWEGGGTLSLSLFNEDYWNDSRRSQSASVGYNNNWQSVS  547
             +     ++++SR E  L+Q+L  + G L L+L  ++YW+     +    GY+++W+ +S
Sbjct  475  PEDFWETGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLS  534

Query  548  YGFNYTFSQNGFDSNGQR---TNVRDHILAFNVSVPLNKWLPGSYATYNMNSSRNGPTSH  604
               + ++S+ + ++ G+     N  ++I  +++SVPL+ W   SYATY+++ + N+ +SH
Sbjct  535  WNVSWSYSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSH  594

Query  605  NLGLSGSALEGNNLNYSLSQGYTGKGGGANGSIQADYKGSLAELNLGYGYDRHRQQVNYG  664
            +LGLSG+ALE NNL+ +L Q+Y + ++   G++   Y GS + +N +Y Y ++ Q++NYG
Sbjct  595  QLGLSGTALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYG  654

Query  665  IQGGVLVHQNGITLSQPLGDTVALVQAPGAAGVNVLNQTGVNTDWRGYAVVPYLTPYRRN  724
            I+GG+L H +G+TLSQ LG+T+ALV+APGAAG+++ N  G  TDWRGY+V   L PY  N
Sbjct  655  IRGGILAHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDEN  714

Query  725  IVGLDGDSFA-DDVDMTLSSQTVIPTRGAVVRASFSPNVGLRVLMTLLTRAGSPVPFGAT  783
             V++ ++ F+  ++++  +  T++PTRGAVV+A F  +VG RVL  +L   G PVPFGA 
Sbjct  715  RVAISDNYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAI  774

Query  784  VSALNDPKGNASIVGDGGQVYLAGLAESGRLQVKWGNGAAQQCQVSYQLANQPESGGI  841
             +  + + ++++IVGD G++YL+GL+E G++ + WG+ A+ +C  +Y ++     +G+
Sbjct  775  AAIQDASLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSFSTPESESGL  832

45) SerAS12_4042 in NC_015566


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score =  487 bits (1836),  Expect = 1e-138, Method: Compositional matrix adjust.
 Identities = 336/839 (41%), Positives = 564/839 (68%), Gaps = 34/839 (4%)

Query  17   ACLFSCQAILLNSPSVAQARDYFNPALLEIDNPALRGADLSVFEENITQAPGSYRVDLYL  76
            +CL+  Q  L+   SV      FNPALLEI++ +  G D+  F+     +PG Y VD+++
Sbjct  14   TCLIFSQN-LMAEVSV------FNPALLEINHQS--GVDIRQFNRANLMPPGVYSVDIFI  64

Query  77   NGQQVDSLDVEFRLQQDAAGKKMLQPCLSAEK--LTELGVRLSSLPAIAGSDD--CVNLP  132
            NG+  +  DV F +Q+++ +   L++C+ A K  L+ +G+++ +L ++ + D+  C++ +
Sbjct  65   NGKMFERQDVTF-VQDNPDAD--LHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDPA  121

Query  133  QAIPQAKATFLFNQLRLNLSIPQAALKLNARDYVSPDKWDAGVPALLVNYSFSGANSQVS  192
              I  +   F  ++L+LN+SI Q  +   A DY+SP +WD G+ AL +NY FSG+++  S
Sbjct  122  PRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLRS  181

Query  193  ESKGQGNDNYYLNLRSGINWGAWRLRNYSVWNQHSGSASSWRSINTYLQRDIIALQSRLT  252
            +  +Q  D  YLNLR+G+N G+WRLRNYS  N   G A    SI+T +QRDI AL+S++ 
Sbjct  182  DYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEY-NSISTWIQRDIAALRSQIM  240

Query  253  LGdsttssdvfdsvQFRGGQLASEDEILPDSMKGYSPIVRGIARSNAQIVIRQNGYVIYQ  312
            +GD+ T+SD+FDS Q+RG++L +++++LP S +G++P+VRGIA+SNA ++IRQNGYVIYQ
Sbjct  241  IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ  300

Query  313  SYVAPGAFEITDLYPTGGSGDLNVSVREANGQEQNFVVPYAVVPVLQREGRFKYSLTSGT  372
            S V+ GAFEITDL  ++ +GDL+V+++E +G EQ F  PYA +++L+REG     ++ G 
Sbjct  301  SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGE  360

Query  373  YRSYGSEVDERPFS----QATGIYGLPWGATLYGGVQAASKYQALALGWGQNLGTVGALS  428
             R      DE  F+    QA  + G++ G TLYGG+QAA +Y + ALG G++LG++GA+S
Sbjct  361  LR------DEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAIS  414

Query  429  ADVTQAWTKQETQPKDQGQSWRLRYGKNVIETGTNFSLASYRYSTRGFYTLQEALESYGG  488
             DVT+A+++   +  + GQS R+ Y+K   +T+T++ L +YRYST G+YTL+E   S   
Sbjct  415  FDVTHARANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNE-WASRRN  473

Query  489  NSAKY--NDHKKSRAELILSQNLWKGGGTLSLSLFNEDYWNDSRRSQSASVGYNNNWQSI  546
            ++  +   ++++SR E  L+Q+L ++ G L L+L  ++YW+     +    GY+++W+ +
Sbjct  474  SPEDFWETGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRL  533

Query  547  SYGFNYTFSQNGFDSNGKR---NNVRDHILAFNVSIPLNKWLPGSYATYNMNSSRNGPTS  603
            S   + ++S+ + ++ G+    +N  ++I  +++S+PL+ W   SYATY+++ + N+ +S
Sbjct  534  SWNVSWSYSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSS  593

Query  604  HNLGLSGSALEGNNLNYSLSQGYTGKGGGANGSIQADYKGSLAELNLGYGYDRYRQQVNY  663
            H+LGLSG+ALE NNL+ +L Q+Y + ++   G++   Y GS + +N +Y Y +  Q++NY
Sbjct  594  HQLGLSGTALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNY  653

Query  664  GIQGGVLVHQNGITLSQPLGDTVALVQAPGAAGVNVLNQTGVNTDWRGYAVVPYLTPYRR  723
            GI+GG+L H +G+TLSQ LG+T+ALV+APGAAG+++ N  G  TDWRGY+V   L PY  
Sbjct  654  GIRGGILAHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDE  713

Query  724  NIVGLDGDSFA-DDVDMTLSSQTVIPTRGAVVRASFSPNVGLRVLMTLLTRAGSPVPFGA  782
            N V++ ++ F+  ++++  +  T++PTRGAVV+A F  +VG RVL  +L   G PVPFGA
Sbjct  714  NRVAISDNYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGA  773

Query  783  TVSALNGANGNASIVGDGGQVYLAGLADSGRLQVKWGNGAAQQCQVSYQLANQPESGGI  841
              +  +++ ++++IVGD G++YL+GL++ G++ + WG+ A+ +C  +Y ++     +G+
Sbjct  774  IAAIQDASLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSFSTPESESGL  832

46) SerAS13_4042 in NC_017573


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score =  487 bits (1836),  Expect = 1e-138, Method: Compositional matrix adjust.
 Identities = 336/839 (41%), Positives = 564/839 (68%), Gaps = 34/839 (4%)

Query  17   ACLFSCQAILLNSPSVAQARDYFNPALLEIDNPALRGADLSVFEENITQAPGSYRVDLYL  76
            +CL+  Q  L+   SV      FNPALLEI++ +  G D+  F+     +PG Y VD+++
Sbjct  14   TCLIFSQN-LMAEVSV------FNPALLEINHQS--GVDIRQFNRANLMPPGVYSVDIFI  64

Query  77   NGQQVDSLDVEFRLQQDAAGKKMLQPCLSAEK--LTELGVRLSSLPAIAGSDD--CVNLP  132
            NG+  +  DV F +Q+++ +   L++C+ A K  L+ +G+++ +L ++ + D+  C++ +
Sbjct  65   NGKMFERQDVTF-VQDNPDAD--LHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDPA  121

Query  133  QAIPQAKATFLFNQLRLNLSIPQAALKLNARDYVSPDKWDAGVPALLVNYSFSGANSQVS  192
              I  +   F  ++L+LN+SI Q  +   A DY+SP +WD G+ AL +NY FSG+++  S
Sbjct  122  PRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLRS  181

Query  193  ESKGQGNDNYYLNLRSGINWGAWRLRNYSVWNQHSGSASSWRSINTYLQRDIIALQSRLT  252
            +  +Q  D  YLNLR+G+N G+WRLRNYS  N   G A    SI+T +QRDI AL+S++ 
Sbjct  182  DYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEY-NSISTWIQRDIAALRSQIM  240

Query  253  LGdsttssdvfdsvQFRGGQLASEDEILPDSMKGYSPIVRGIARSNAQIVIRQNGYVIYQ  312
            +GD+ T+SD+FDS Q+RG++L +++++LP S +G++P+VRGIA+SNA ++IRQNGYVIYQ
Sbjct  241  IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ  300

Query  313  SYVAPGAFEITDLYPTGGSGDLNVSVREANGQEQNFVVPYAVVPVLQREGRFKYSLTSGT  372
            S V+ GAFEITDL  ++ +GDL+V+++E +G EQ F  PYA +++L+REG     ++ G 
Sbjct  301  SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGE  360

Query  373  YRSYGSEVDERPFS----QATGIYGLPWGATLYGGVQAASKYQALALGWGQNLGTVGALS  428
             R      DE  F+    QA  + G++ G TLYGG+QAA +Y + ALG G++LG++GA+S
Sbjct  361  LR------DEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAIS  414

Query  429  ADVTQAWTKQETQPKDQGQSWRLRYGKNVIETGTNFSLASYRYSTRGFYTLQEALESYGG  488
             DVT+A+++   +  + GQS R+ Y+K   +T+T++ L +YRYST G+YTL+E   S   
Sbjct  415  FDVTHARANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNE-WASRRN  473

Query  489  NSAKY--NDHKKSRAELILSQNLWKGGGTLSLSLFNEDYWNDSRRSQSASVGYNNNWQSI  546
            ++  +   ++++SR E  L+Q+L ++ G L L+L  ++YW+     +    GY+++W+ +
Sbjct  474  SPEDFWETGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRL  533

Query  547  SYGFNYTFSQNGFDSNGKR---NNVRDHILAFNVSIPLNKWLPGSYATYNMNSSRNGPTS  603
            S   + ++S+ + ++ G+    +N  ++I  +++S+PL+ W   SYATY+++ + N+ +S
Sbjct  534  SWNVSWSYSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSS  593

Query  604  HNLGLSGSALEGNNLNYSLSQGYTGKGGGANGSIQADYKGSLAELNLGYGYDRYRQQVNY  663
            H+LGLSG+ALE NNL+ +L Q+Y + ++   G++   Y GS + +N +Y Y +  Q++NY
Sbjct  594  HQLGLSGTALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNY  653

Query  664  GIQGGVLVHQNGITLSQPLGDTVALVQAPGAAGVNVLNQTGVNTDWRGYAVVPYLTPYRR  723
            GI+GG+L H +G+TLSQ LG+T+ALV+APGAAG+++ N  G  TDWRGY+V   L PY  
Sbjct  654  GIRGGILAHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDE  713

Query  724  NIVGLDGDSFA-DDVDMTLSSQTVIPTRGAVVRASFSPNVGLRVLMTLLTRAGSPVPFGA  782
            N V++ ++ F+  ++++  +  T++PTRGAVV+A F  +VG RVL  +L   G PVPFGA
Sbjct  714  NRVAISDNYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGA  773

Query  783  TVSALNGANGNASIVGDGGQVYLAGLADSGRLQVKWGNGAAQQCQVSYQLANQPESGGI  841
              +  +++ ++++IVGD G++YL+GL++ G++ + WG+ A+ +C  +Y ++     +G+
Sbjct  774  IAAIQDASLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSFSTPESESGL  832

47) SerAS9_4041 in NC_015567


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score =  487 bits (1836),  Expect = 1e-138, Method: Compositional matrix adjust.
 Identities = 336/839 (41%), Positives = 564/839 (68%), Gaps = 34/839 (4%)

Query  17   ACLFSCQAILLNSPSVAQARDYFNPALLEIDNPALRGADLSVFEENITQAPGSYRVDLYL  76
            +CL+  Q  L+   SV      FNPALLEI++ +  G D+  F+     +PG Y VD+++
Sbjct  14   TCLIFSQN-LMAEVSV------FNPALLEINHQS--GVDIRQFNRANLMPPGVYSVDIFI  64

Query  77   NGQQVDSLDVEFRLQQDAAGKKMLQPCLSAEK--LTELGVRLSSLPAIAGSDD--CVNLP  132
            NG+  +  DV F +Q+++ +   L++C+ A K  L+ +G+++ +L ++ + D+  C++ +
Sbjct  65   NGKMFERQDVTF-VQDNPDAD--LHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDPA  121

Query  133  QAIPQAKATFLFNQLRLNLSIPQAALKLNARDYVSPDKWDAGVPALLVNYSFSGANSQVS  192
              I  +   F  ++L+LN+SI Q  +   A DY+SP +WD G+ AL +NY FSG+++  S
Sbjct  122  PRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLRS  181

Query  193  ESKGQGNDNYYLNLRSGINWGAWRLRNYSVWNQHSGSASSWRSINTYLQRDIIALQSRLT  252
            +  +Q  D  YLNLR+G+N G+WRLRNYS  N   G A    SI+T +QRDI AL+S++ 
Sbjct  182  DYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEY-NSISTWIQRDIAALRSQIM  240

Query  253  LGdsttssdvfdsvQFRGGQLASEDEILPDSMKGYSPIVRGIARSNAQIVIRQNGYVIYQ  312
            +GD+ T+SD+FDS Q+RG++L +++++LP S +G++P+VRGIA+SNA ++IRQNGYVIYQ
Sbjct  241  IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ  300

Query  313  SYVAPGAFEITDLYPTGGSGDLNVSVREANGQEQNFVVPYAVVPVLQREGRFKYSLTSGT  372
            S V+ GAFEITDL  ++ +GDL+V+++E +G EQ F  PYA +++L+REG     ++ G 
Sbjct  301  SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGE  360

Query  373  YRSYGSEVDERPFS----QATGIYGLPWGATLYGGVQAASKYQALALGWGQNLGTVGALS  428
             R      DE  F+    QA  + G++ G TLYGG+QAA +Y + ALG G++LG++GA+S
Sbjct  361  LR------DEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAIS  414

Query  429  ADVTQAWTKQETQPKDQGQSWRLRYGKNVIETGTNFSLASYRYSTRGFYTLQEALESYGG  488
             DVT+A+++   +  + GQS R+ Y+K   +T+T++ L +YRYST G+YTL+E   S   
Sbjct  415  FDVTHARANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNE-WASRRN  473

Query  489  NSAKY--NDHKKSRAELILSQNLWKGGGTLSLSLFNEDYWNDSRRSQSASVGYNNNWQSI  546
            ++  +   ++++SR E  L+Q+L ++ G L L+L  ++YW+     +    GY+++W+ +
Sbjct  474  SPEDFWETGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRL  533

Query  547  SYGFNYTFSQNGFDSNGKR---NNVRDHILAFNVSIPLNKWLPGSYATYNMNSSRNGPTS  603
            S   + ++S+ + ++ G+    +N  ++I  +++S+PL+ W   SYATY+++ + N+ +S
Sbjct  534  SWNVSWSYSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSS  593

Query  604  HNLGLSGSALEGNNLNYSLSQGYTGKGGGANGSIQADYKGSLAELNLGYGYDRYRQQVNY  663
            H+LGLSG+ALE NNL+ +L Q+Y + ++   G++   Y GS + +N +Y Y +  Q++NY
Sbjct  594  HQLGLSGTALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNY  653

Query  664  GIQGGVLVHQNGITLSQPLGDTVALVQAPGAAGVNVLNQTGVNTDWRGYAVVPYLTPYRR  723
            GI+GG+L H +G+TLSQ LG+T+ALV+APGAAG+++ N  G  TDWRGY+V   L PY  
Sbjct  654  GIRGGILAHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDE  713

Query  724  NIVGLDGDSFA-DDVDMTLSSQTVIPTRGAVVRASFSPNVGLRVLMTLLTRAGSPVPFGA  782
            N V++ ++ F+  ++++  +  T++PTRGAVV+A F  +VG RVL  +L   G PVPFGA
Sbjct  714  NRVAISDNYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGA  773

Query  783  TVSALNGANGNASIVGDGGQVYLAGLADSGRLQVKWGNGAAQQCQVSYQLANQPESGGI  841
              +  +++ ++++IVGD G++YL+GL++ G++ + WG+ A+ +C  +Y ++     +G+
Sbjct  774  IAAIQDASLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSFSTPESESGL  832

48) CFSAN001992_05635 in NC_020307


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score =  485 bits (1829),  Expect = 5e-138, Method: Compositional matrix adjust.
 Identities = 350/858 (41%), Positives = 575/858 (68%), Gaps = 35/858 (4%)

Query  7    KKIMTLSRIACFIALQCALPAGNTAFAREYFNPALLGIDGPGKELTDLSAFEEGIGQMPG  66
            + ++ L+  +C+I  Q  ++  +       FNPALL I+  +    D+  F+ +    PG
Sbjct  5    RIVVGLTAGTCLIFSQNLMAEVSV------FNPALLEINHQSG--VDIRQFNRANLMPPG  56

Query  67   TYRVDVIVNKSSAGVHDVNFVMQKDTAGNTTLQPCFSV--DSLREFGIRTDAFPNLAGHG  124
             Y VD+++N      +DV FV ++    ++ L++CF     +L  FGI+ DA+ ++ + +
Sbjct  57   VYSVDIFINGKMFERQDVTFVQDN---PDADLHACFIAIKKTLSSFGIKVDALKSFNDVD  113

Query  125  DCANLAAIPQASA---EFAFERQQLRLSIPQAAVDSHARGYVAPERLDEGINALLLNYSF  181
            +   L + P+  +   +F  ++ QL +SI Q  +D+ A +Y++P R DEGINAL +NY F
Sbjct  114  ETVCLDPAPRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRWDEGINALTINYDF  173

Query  182  SGANTEARRGDMTDSDSYYLSLRPGLNIGPWRIRNYSTWNRNVNGDSADESWDSLYTYAQ  241
            SG++T     +  ++D+ YL+LR GLNIGPWR+RNYST    +N   +    +S+ T  Q
Sbjct  174  SGSHTLRSDYGSQETDTSYLNLRNGLNIGPWRLRNYST----LNTSDGRAEYNSISTWIQ  229

Query  242  RNIIALKSQLTFGDSTAPSELFDSVPFRGAQLASDDDMLPDSLRGYAPVVRGIARTNAQV  301
            R+I AL+SQ+ +GD+ ++S++FDS  +RGA+L +D+DMLP S  G+APVVRGIA++NA V
Sbjct  230  RDIAALRSQIMIGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATV  289

Query  302  IIKQNGYTIYQSYVSPGAFEITDMYPTGSSGDLDVTIKEADGSEQHQTVAFASLPILQRE  361
            II+QNGY IYQS V+ GAFEITD+  ++++GDLDVTIKE DGSEQ+ T ++ASL+IL+RE
Sbjct  290  IIRQNGYVIYQSAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKRE  349

Query  362  GRLKYSVTSGQYRPYESDIDKKMFTQATLIYGLPAGFTVYGGGQFSQHYKSLLTGLGKNL  421
            G     V+ G+ R  E ++   ++ QA ++ G++ G+T+YGG Q +++Y S   G+GK+L
Sbjct  350  GLTDVDVSVGELRD-EDGFTPDVL-QAQILHGFSHGITLYGGMQAAENYGSAALGVGKDL  407

Query  422  GELGAVSVDGTQAWSTQKDQDKESGQSWRIRYSKNILETGTNisisgyrystsgyytLPE  481
            G LGA+S D T+A++   ++D E+GQS R+ YSK + +T+T++ + GYRYST GYYTL E
Sbjct  408  GALGAISFDVTHARANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNE  467

Query  482  VLDTW--RDDESQN--NNDRRRNRAELQLNQSIGASLGSLSLNAISEDYWNSDRKMRSLG  537
                W  R + +++  + + RR+R E  L QS+G   G+L L    ++YW++D   R + 
Sbjct  468  ----WASRRNSPEDFWETGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQ  523

Query  538  VGYSNSWGGVTYNINYSYNRNttdsddsdKIYDE--DQVFSLSINIPLDRWLSHSYATYN  595
             GYS+SW  ++ N++ SY+  + ++ +++   D+  +Q++ LS+++PL  W ++SYATY+
Sbjct  524  FGYSSSWKRLSWNVSWSYSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYS  583

Query  596  LNTSKRGNTNHTVGLNGSALEDNNLNWSLQQSETNHGEGNGGYASLDYQGAYARMNGAYS  655
            ++ +  + ++H +GL+G+ALE NNL+W+L QS  +H++  GG  SL Y+G+Y+ +NG+Y+
Sbjct  584  VSQNDNSGSSHQLGLSGTALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYN  643

Query  656  YDNDQKRVNYGMEGGIVAHAHGVTLSQSLGETSALVEAPGANGVTISNQTGVKTDFRGYT  715
            Y ++ +R+NYG+ GGI+AH++GVTLSQ LGET ALV APGA G+ I N  G  TD RGYT
Sbjct  644  YSQNSQRLNYGIRGGILAHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYT  703

Query  716  VVPYVTPYRETAVSLDTETLPDGADVDLTSQMIT--PTRGAIVRAHFDTRIGKRVLMNLS  773
            V   + PY E  V++  + ++  ++++L + ++T  PTRGA+V+A+F T++G RVL  + 
Sbjct  704  VKTQLNPYDENRVAISDNYFSK-SNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVL  762

Query  774  RTPTEIVPFGALATIEGQPADKSFIVGDHGQVYLTGAPERGTLKVTWGRTANDTCHVTFN  833
             +    VPFGA+A+I++ +   S IVGD+G++YL+G PE+G + ++WG  A+  C   ++
Sbjct  763  NANGKPVPFGAIAAIQDASLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYS  822

Query  834  LTELNATDGVMETQESCR  851
            ++  ++  G++E   +C+
Sbjct  823  FSTPESESGLIEQGVTCH  840

49) SeSA_A1271 in NC_011094


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score =  485 bits (1829),  Expect = 5e-138, Method: Compositional matrix adjust.
 Identities = 350/858 (41%), Positives = 575/858 (68%), Gaps = 35/858 (4%)

Query  7    KKIMTLSRIACFIALQCALPAGNTAFAREYFNPALLGIDGPGKELTDLSAFEEGIGQMPG  66
            + ++ L+  +C+I  Q  ++  +       FNPALL I+  +    D+  F+ +    PG
Sbjct  5    RIVVGLTAGTCLIFSQNLMAEVSV------FNPALLEINHQSG--VDIRQFNRANLMPPG  56

Query  67   TYRVDVIVNKSSAGVHDVNFVMQKDTAGNTTLQPCFSV--DSLREFGIRTDAFPNLAGHG  124
             Y VD+++N      +DV FV ++    ++ L++CF     +L  FGI+ DA+ ++ + +
Sbjct  57   VYSVDIFINGKMFERQDVTFVQDN---PDADLHACFIAIKKTLSSFGIKVDALKSFNDVD  113

Query  125  DCANLAAIPQASA---EFAFERQQLRLSIPQAAVDSHARGYVAPERLDEGINALLLNYSF  181
            +   L + P+  +   +F  ++ QL +SI Q  +D+ A +Y++P R DEGINAL +NY F
Sbjct  114  ETVCLDPAPRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRWDEGINALTINYDF  173

Query  182  SGANTEARRGDMTDSDSYYLSLRPGLNIGPWRIRNYSTWNRNVNGDSADESWDSLYTYAQ  241
            SG++T     +  ++D+ YL+LR GLNIGPWR+RNYST    +N   +    +S+ T  Q
Sbjct  174  SGSHTLRSDYGSQETDTSYLNLRNGLNIGPWRLRNYST----LNTSDGRAEYNSISTWIQ  229

Query  242  RNIIALKSQLTFGDSTAPSELFDSVPFRGAQLASDDDMLPDSLRGYAPVVRGIARTNAQV  301
            R+I AL+SQ+ +GD+ ++S++FDS  +RGA+L +D+DMLP S  G+APVVRGIA++NA V
Sbjct  230  RDIAALRSQIMIGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATV  289

Query  302  IIKQNGYTIYQSYVSPGAFEITDMYPTGSSGDLDVTIKEADGSEQHQTVAFASLPILQRE  361
            II+QNGY IYQS V+ GAFEITD+  ++++GDLDVTIKE DGSEQ+ T ++ASL+IL+RE
Sbjct  290  IIRQNGYVIYQSAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKRE  349

Query  362  GRLKYSVTSGQYRPYESDIDKKMFTQATLIYGLPAGFTVYGGGQFSQHYKSLLTGLGKNL  421
            G     V+ G+ R  E ++   ++ QA ++ G++ G+T+YGG Q +++Y S   G+GK+L
Sbjct  350  GLTDVDVSVGELRD-EDGFTPDVL-QAQILHGFSHGITLYGGMQAAENYGSAALGVGKDL  407

Query  422  GELGAVSVDGTQAWSTQKDQDKESGQSWRIRYSKNILETGTNisisgyrystsgyytLPE  481
            G LGA+S D T+A++   ++D E+GQS R+ YSK + +T+T++ + GYRYST GYYTL E
Sbjct  408  GALGAISFDVTHARANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNE  467

Query  482  VLDTW--RDDESQN--NNDRRRNRAELQLNQSIGASLGSLSLNAISEDYWNSDRKMRSLG  537
                W  R + +++  + + RR+R E  L QS+G   G+L L    ++YW++D   R + 
Sbjct  468  ----WASRRNSPEDFWETGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQ  523

Query  538  VGYSNSWGGVTYNINYSYNRNttdsddsdKIYDE--DQVFSLSINIPLDRWLSHSYATYN  595
             GYS+SW  ++ N++ SY+  + ++ +++   D+  +Q++ LS+++PL  W ++SYATY+
Sbjct  524  FGYSSSWKRLSWNVSWSYSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYS  583

Query  596  LNTSKRGNTNHTVGLNGSALEDNNLNWSLQQSETNHGEGNGGYASLDYQGAYARMNGAYS  655
            ++ +  + ++H +GL+G+ALE NNL+W+L QS  +H++  GG  SL Y+G+Y+ +NG+Y+
Sbjct  584  VSQNDNSGSSHQLGLSGTALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYN  643

Query  656  YDNDQKRVNYGMEGGIVAHAHGVTLSQSLGETSALVEAPGANGVTISNQTGVKTDFRGYT  715
            Y ++ +R+NYG+ GGI+AH++GVTLSQ LGET ALV APGA G+ I N  G  TD RGYT
Sbjct  644  YSQNSQRLNYGIRGGILAHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYT  703

Query  716  VVPYVTPYRETAVSLDTETLPDGADVDLTSQMIT--PTRGAIVRAHFDTRIGKRVLMNLS  773
            V   + PY E  V++  + ++  ++++L + ++T  PTRGA+V+A+F T++G RVL  + 
Sbjct  704  VKTQLNPYDENRVAISDNYFSK-SNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVL  762

Query  774  RTPTEIVPFGALATIEGQPADKSFIVGDHGQVYLTGAPERGTLKVTWGRTANDTCHVTFN  833
             +    VPFGA+A+I++ +   S IVGD+G++YL+G PE+G + ++WG  A+  C   ++
Sbjct  763  NANGKPVPFGAIAAIQDASLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYS  822

Query  834  LTELNATDGVMETQESCR  851
            ++  ++  G++E   +C+
Sbjct  823  FSTPESESGLIEQGVTCH  840

50) Kvar_2589 in NC_013850


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score =  479 bits (1805),  Expect = 4e-136, Method: Compositional matrix adjust.
 Identities = 333/822 (41%), Positives = 565/822 (69%), Gaps = 23/822 (2%)

Query  36   FNPELVELDNPGTERVDLSGFESGA-QAPGNYHvdvvlddqlvdTRDIMFVLLKEPGGDE  94
            FNP L+E+++ +   VD+  F+ +   +PG Y VD+ +++++ + +D+ FV   +   D 
Sbjct  29   FNPALLEINHQSG--VDIRQFNRANLMPPGVYSVDIFINGKMFERQDVTFV---QDNPDA  83

Query  95   KLVPC-LSIEQ-LASWGVKTGLFPALKG--ETSCANLSAIPQ-ASTDFQFAMQRLVLSIP  149
             L +C ++I + L+S G+K + + ++++  ET C  L + P+  ++  QF  ++L L+I+
Sbjct  84   DLHACFIAIKKTLSSFGIKVDALKSFNDVDETVC--LDPAPRIEGSSWQFDSDKLQLNIS  141

Query  150  QAAISAQARGS--VPPDRWDEGINAALLNYSLsgannwaknnnssnsdsqyanLRPGVNI  207
               I  +A +   ++P RWDEGINA  +NY +SG++    +  S ++D+ Y NLR G+NI
Sbjct  142  IHQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLRSDYGSQETDTSYLNLRNGLNI  201

Query  208  GPWRLRNYTTWSRDSQGHDAWDTVYTYAQRTIIPLKSQLTLGDSSAPADVFDSMPFRGGQ  267
            GPWRLRNY+T    S+G+   +++ T  QR I +L+SQ+ +GD+ +++D+FDS  +RG++
Sbjct  202  GPWRLRNYST-LNTSDGRAEYNSISTWIQRDIAALRSQIMIGDTWTASDIFDSTQIRGAR  260

Query  268  LASDDDMLPDSLKGYAPVVRGIARTNAQVIIRQNGYQIYQSFVAPGAFEITDMYPTGGAG  327
            L +D+DMLP S +G+APVVRGIA++NA VIIRQNGY IYQS V+ GAFEITD+  ++ +G
Sbjct  261  LYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQSAVPQGAFEITDLNTASTGG  320

Query  328  DLDVTIKEADGSEQHFSVPFASLPVLQREGRIKYALTGGQYRSYNGSVDKTPFGQMSVIL  387
            DLDVTIKE DGSEQ+F+ P+ASL++L+REG     ++ G+ R  +G        Q  ++ 
Sbjct  321  DLDVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGELRDEDGFTPDVL--QAQILH  378

Query  388  GLPYGFTFYGGLQESSKYQSLAAGVGKNMGDFGAISSDITQGWSTPYNMPKSNGQSWRAR  447
            G++ G+T+YGG+Q + +Y S A GVGK++G +GAIS D+T++++   +     GQS R  
Sbjct  379  GFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHARANFSHDDTETGQSYRFL  438

Query  448  YSKNFASTGTNFAIAGYRYSTSGYYGMQEVLDSYGDSNAL--QDRRRNRAELTLSQGLGD  505
            YSK F  T+T++ + GYRYST GYY ++E       ++ +   + RR+R E TL+Q+LG 
Sbjct  439  YSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWETGNRRSRVEGTLTQSLGR  498

Query  506  NLGSLMLNASHEDYWNSGKAMESWSVGYNNYWHSISYGLTWTLSRNGSTGSYSAHQSDGK  565
            + G+L L  S+++YW+++        GY++ W  +S  ++W+ S  +  G+ + H SD  
Sbjct  499  DYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWSYSNTARQGTGNNHASDNT  558

Query  566  -NQMLALNISIPLEKLLPQTWANYGMNASKHNGTTHSVGLNGVAMPNNALNWNIQQGYGT  624
             +Q+  L++S+PL     ++ A Y+++ + ++G++H +GL+G A+  N L+WN+ Q+Y +
Sbjct  559  SEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSGTALERNNLSWNLMQSYNS  618

Query  625  HDVAYTGNMNGDYRGTYGELTAGYSYDKNTDRLNYGIQGGVVAHANGVTFSQPLGETNVL  684
            HD    GNM+  Y G+YG + ++Y+Y +N++RLNYGI+GG++AH++GVT+SQ LGET  L
Sbjct  619  HDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGILAHSEGVTLSQELGETIAL  678

Query  685  IAAPGAAGVGIQNMTGATTDYRGYTLASNLMPYRKNDVSLITETLP-ANVELEQTVKTVV  743
            + APGAAG+ I+NM GA+TD RGYT+ ++L PY  N V++  + ++ +N+EL++TV T+V
Sbjct  679  VKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISDNYFSKSNIELDNTVVTMV  738

Query  744  PTRGAIVRANYLASVGVRMLMSLTQQNGQSVPFGAIASIEGAEHSSF-IVGESGQVYLTG  802
            PTRGA+V+A++++ VG R+L  + + NG++VPFGAIA+I++A  +   IVG+ G++YL+G
Sbjct  739  PTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDASLADSGIVGDRGELYLSG  798

Query  803  LAPQVNLTVKWGNQSANTCRVHYSINMAKLNNDVIIDNAACR  844
            L+ + ++T+ WG++++  C  +YS++ +  ++++I +  +C+
Sbjct  799  LPEKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVTCH  840

51) lpfC in NC_011283


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score =  478 bits (1801),  Expect = 8e-136, Method: Compositional matrix adjust.
 Identities = 332/822 (41%), Positives = 565/822 (69%), Gaps = 23/822 (2%)

Query  36   FNPELVELDNPGTERVDLSGFESGE-QAPGNYHvdvvlddqlvdTRDIMFVLLKERGDEE  94
            FNP L+E+++ +   VD+  F+ ++  +PG Y VD+ +++++ + +D+ FV   +   + 
Sbjct  29   FNPALLEINHQSG--VDIRQFNRANLMPPGVYSVDIFINGKMFERQDVTFV---QDNPDA  83

Query  95   KLVPC-LSIEQ-LASWGVKTGLFPALKG--ETSCANLSAIPQ-ASTDFQFAMQRLVLSIP  149
             L +C ++I + L+S G+K + + ++++  ET C  L + P+  ++  QF  ++L L+I+
Sbjct  84   DLHACFIAIKKTLSSFGIKVDALKSFNDVDETVC--LDPAPRIEGSSWQFDSDKLQLNIS  141

Query  150  QAAISAQARGS--VPPDRWDEGINAALLNYSLsgannwaknnnssnsdsqyanLRPGVNI  207
               I  +A +   ++P RWDEGINA  +NY +SG++    +  S ++D+ Y NLR G+NI
Sbjct  142  IHQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLRSDYGSQETDTSYLNLRNGLNI  201

Query  208  GPWRLRNYTTWSRDSQGHDAWDTVYTYAQRTIIPLKSQLTLGDSSAPADVFDSIPFRGGQ  267
            GPWRLRNY+T    S+G+   +++ T  QR I +L+SQ+ +GD+ +++D+FDS  +RG++
Sbjct  202  GPWRLRNYST-LNTSDGRAEYNSISTWIQRDIAALRSQIMIGDTWTASDIFDSTQIRGAR  260

Query  268  LASDDDMLPDSLKGYAPVVRGIARTNAQVIIRQNGYQIYQSFVAPGAFEITDMYPTGGAG  327
            L +D+DMLP S +G+APVVRGIA++NA VIIRQNGY IYQS V+ GAFEITD+  ++ +G
Sbjct  261  LYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQSAVPQGAFEITDLNTASTGG  320

Query  328  DLDVTIKEADGSEQHFSVPFASLPVLQREGRIKYALTGGQYRSYNGSVDKTPFGQMSVIL  387
            DLDVTIKE DGSEQ+F+ P+ASL++L+REG     ++ G+ R  +G        Q  ++ 
Sbjct  321  DLDVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGELRDEDGFTPDVL--QAQILH  378

Query  388  GLPYGFTFYGGLQESSKYQSLAAGVGKNMGDFGAISSDITQGWSTPYNMPKSNGQSWRAR  447
            G++ G+T+YGG+Q + +Y S A GVGK++G +GAIS D+T++++   +     GQS R  
Sbjct  379  GFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHARANFSHDDTETGQSYRFL  438

Query  448  YSKNFASTGTNFAIAGYRYSTSDYYGMQEVLDSYGDSNAL--QDRRRNRAELTLSQGLGD  505
            YSK F  T+T++ + GYRYST +YY ++E       ++ +   + RR+R E TL+Q+LG 
Sbjct  439  YSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWETGNRRSRVEGTLTQSLGR  498

Query  506  NLGSLMLNASHEDYWNSGKAMESWSVGYNNYWHSISYGLTWTLSRNGSTGSYSAHQSDGK  565
            + G+L L  S+++YW+++        GY++ W  +S  ++W+ S  +  G+ + H SD  
Sbjct  499  DYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWSYSNTARQGTGNNHASDNT  558

Query  566  -NQMLALNISIPLEKLLPQTWANYGMNASKHNGTTHSVGLNGVAMPNNALNWNIQQGYGT  624
             +Q+  L++S+PL     ++ A Y+++ + ++G++H +GL+G A+  N L+WN+ Q+Y +
Sbjct  559  SEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSGTALERNNLSWNLMQSYNS  618

Query  625  HDVAYTGNMNGDYRGTYGELTAGYSYDKNTDRLNYGIQGGVVAHANGVTFSQPLGETNVL  684
            HD    GNM+  Y G+YG + ++Y+Y +N++RLNYGI+GG++AH++GVT+SQ LGET  L
Sbjct  619  HDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGILAHSEGVTLSQELGETIAL  678

Query  685  IAAPGAAGVGIQNMTGATTDYRGYTLASNLMPYRKNDVSLITETLP-ANVELEQTVKTVV  743
            + APGAAG+ I+NM GA+TD RGYT+ ++L PY  N V++  + ++ +N+EL++TV T+V
Sbjct  679  VKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISDNYFSKSNIELDNTVVTMV  738

Query  744  PTRGAIVRANYVASVGVRMLMSLTQQNGQSVPFGAIASIEGAEHSSF-IVGESGQVYLTG  802
            PTRGA+V+A++V+ VG R+L  + + NG++VPFGAIA+I++A  +   IVG+ G++YL+G
Sbjct  739  PTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDASLADSGIVGDRGELYLSG  798

Query  803  LAPQVNLTVKWGNQSANTCRVHYSINMAKLNNDVIIDNAVCR  844
            L+ + ++T+ WG++++  C  +YS++ +  ++++I +   C+
Sbjct  799  LPEKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVTCH  840

52) lpfC in NC_013716


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score =  476 bits (1795),  Expect = 2e-135, Method: Compositional matrix adjust.
 Identities = 331/821 (41%), Positives = 564/821 (69%), Gaps = 29/821 (3%)

Query  15   FNPALLENNPTAADNIDLSAFETGQ-QAQGTYRVDIILNGANVDTREIAFFPGE-EGDLE  72
            FNPALLE N  ++  +D+  F+ ++  + G Y VDI++NG   + ++++F  ++ ++DL+
Sbjct  29   FNPALLEINHQSG--VDIRQFNRANLMPPGVYSVDIFINGKMFERQDVTFVQDNPDADLH  86

Query  73   PCLSEA--LLQRYGVKTASYPGLMAKGKCADLAAIPQ-ASSELLFSAQKLLLTIP--QAA  127
            +C+      L  +G+K  +  ++   +    L + P+  +S   F ++KL L I+  Q  
Sbjct  87   ACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDPAPRIEGSSWQFDSDKLQLNISIHQIY  146

Query  128  LSAQARGYVAPELWDEGISAVMLNYSFSGDRS-RTNADGVTSNSQYASLRPGINVGPWRL  186
            + A A +Y++P  WDEGI+A+ +NY FSG ++ R++ ++  +++ Y +LR G+N+GPWRL
Sbjct  147  MDAMAYDYISPTRWDEGINALTINYDFSGSHTLRSDYGSQETDTSYLNLRNGLNIGPWRL  206

Query  187  RNYTTWNRDSQGNDNWDTVYTYLQRNIVPLKAQLVLGDSASPADIFDSIPFRGAQLASDD  246
            RNY+T    S+G  + +++ T +QR+I +L++Q+++GD+ +++DIFDS  +RGA+L +D+
Sbjct  207  RNYST-LNTSDGRAEYNSISTWIQRDIAALRSQIMIGDTWTASDIFDSTQIRGARLYTDN  265

Query  247  EMLPDSLKGYAPVVRGIARSHAQVIIRQNGYQIYQSYVAPGAFEISDLYPTGGAGDLDVT  306
            +MLP S +G+APVVRGIA+S+A VIIRQNGY IYQS V+ GAFEI+DL  ++ +GDLDVT
Sbjct  266  DMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQSAVPQGAFEITDLNTASTGGDLDVT  325

Query  307  LKEADGGEQHFTVPFASLPVLQREGRVKYALTAGRYRSYDSRVAQSGFA----QGTTIYG  362
            +KE DG+EQ+FT P+ASL++L+REG     ++ G  R       + GF+    Q+  + G
Sbjct  326  IKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGELRD------EDGFTPDVLQAQILHG  379

Query  363  LPAAVTVYGGLQaaddyravaagagKNFGVVGALSTDLTRSWSQPRNAAKAQGQSWRIRY  422
            ++ ++T+YGG+QAA++Y + A G GK++G +GA+S D+T+++++  +     GQS R+ Y
Sbjct  380  FSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHARANFSHDDTETGQSYRFLY  439

Query  423  SKNSVLTGTHFAIAGYRYSTRDFYAMEEVFTTRGGSNT--PAQKRRNRMEANVSQSLGQG  480
            SK    T+T + + GYRYST ++Y+++E  + R +++    + +RR+R+E+ ++QSLG++
Sbjct  440  SKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWETGNRRSRVEGTLTQSLGRD  499

Query  481  RGALSLSAVREEYWNRENPMQSWSVSYNNAWNGVSYGISWTQSKNSLSGTDNRYEKD---  537
             G L L+  R++YW+ ++  +    +Y+++W+ +S  +SW+ S+ +  GT+N    D   
Sbjct  500  YGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWSYSNTARQGTGNNHASDNTS  559

Query  538  QQI-AFNVSVPLEGFMANSWAHYSLNGGRNAGTTHSAGLSGMALADNALNWNLQQGYGSD  596
            +QI  +++SVPL G  +NS A YS++   N+G++H  GLSG AL  N L+WNL Q+Y S+
Sbjct  560  EQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSGTALERNNLSWNLMQSYNSH  619

Query  597  GVGYTGSLNADYKGTYAQVSSGYSYDSNMQRLNYalagallahaDGVTLSQPLGETNVLI  656
            +    G+++  Y G+Y+ V+++Y+Y  N QRLNY++ G++LAH++GVTLSQ LGET  L+
Sbjct  620  DDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGILAHSEGVTLSQELGETIALV  679

Query  657  KAPGANGVGVKNQRGVKTDFRGYTVAGNVSPYRNNDIGL-DTLSVPANVELELTNKNVVP  715
            KAPGA G+ + N RG  TD RGYTV  +++PY +N +++ D     +N+EL+ T   +VP
Sbjct  680  KAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISDNYFSKSNIELDNTVVTMVP  739

Query  716  TRGAVVRAEFVASVGLRLLLTLHRDNGRPVPFGARVVVQGAQ-GPGFIVGDDGQVYLSGM  774
            TRGAVV+AEFV+ VG R+L+ +   NG+PVPFGA   +Q+A  + + IVGD G++YLSG+
Sbjct  740  TRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDASLADSGIVGDRGELYLSGL  799

Query  775  QPQGELDVAWGDDPQQRCTVEYSFKAAVGSGDIITDARLCR  815
              +G++ ++WG+++  +C  +YSF ++ + +++I ++  C+
Sbjct  800  PEKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVTCH  840

53) ECENHK_08570 in NC_018405


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score =  472 bits (1779),  Expect = 4e-134, Method: Compositional matrix adjust.
 Identities = 336/827 (41%), Positives = 564/827 (69%), Gaps = 30/827 (3%)

Query  36   FNPALLGIDGPGKDISDLSAFEEGVGQMPGTYRVDVLVNQTLTGTHDIEFSMQKDSHGQT  95
            FNPALL I+  +    D+  F+ +    PG Y VD+++N  +   +D+ F    + + ++
Sbjct  29   FNPALLEINHQSG--VDIRQFNRANLMPPGVYSVDIFINGKMFERQDVTFV---QDNPDA  83

Query  96   SLQPC-ISVEM-LRDFGVRTEQFPQLTGENHCANLAAIPNAAT---QFVFNKQQLLLSIP  150
             L++C I++   L  FG++ + +  + + ++   L + P       QF  +K QL +SI 
Sbjct  84   DLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDPAPRIEGSSWQFDSDKLQLNISIH  143

Query  151  QAAMNNQARGYVAPERLDEGINALLLNYSFTGGNTQARHSDMTDSDSYYLNLRPGLNIGP  210
            Q  M+  A +Y++P R DEGINAL +NY F+G++T   + +  ++D+ YLNLR GLNIGP
Sbjct  144  QIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLRSDYGSQETDTSYLNLRNGLNIGP  203

Query  211  WRVRNYSTWSRNTSGNSTQNNWDSAYTYAQRNIIALKSQLTLGESNSPSDLFDSVPFRGA  270
            WR+RNYST     + +  + + +S  T  QR+I AL+SQ+ +G++ ++SD+FDS  +RGA
Sbjct  204  WRLRNYST----LNTSDGRAEYNSISTWIQRDIAALRSQIMIGDTWTASDIFDSTQIRGA  259

Query  271  QLASDDDMLPDSLRGYAPVVRGIARTNAQVIIKQNGYTIYQSYVSPGAFEITDMYPTGSS  330
            +L +D+DMLP S  G+APVVRGIA++NA VII+QNGY IYQS V+ GAFEITD+  ++++
Sbjct  260  RLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQSAVPQGAFEITDLNTASTG  319

Query  331  GDLDVTIKEADGSEQHQLVPFASLPVLQREGRLKYSLTSGQYRPYDSAVDKTFFTQGSAI  390
            GDLDVTIKE DGSEQ+   P+ASL++L+REG     ++ G+ R  D+     +  Q+  +
Sbjct  320  GDLDVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGELRDEDGFTPDVL--QAQIL  377

Query  391  YGLPAGFTAYGGGQLSQHYQSLLVGIGKNFGGLGAVSVDGTQAWSTQQDQEKAIGQSMRV  450
             G++ G+T YGG Q +++Y S  +G+GK++G+LGA+S D T+A++   +++   GQS R 
Sbjct  378  HGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHARANFSHDDTETGQSYRF  437

Query  451  RYSKNILETGTNIAIsgyrystsgyytLQEVLDTWRDSN---WQDNTERRRNRAEILLNQ  507
             YSK + +T+T++ + GYRYST GYYTL+E   ++R+S    W+  T  RR+R E  L Q
Sbjct  438  LYSKLFDDTDTSLRLVGYRYSTEGYYTLNE-WASRRNSPEDFWE--TGNRRSRVEGTLTQ  494

Query  508  NLWEGAGSISLNAISEDYWNSDRTMRSIGAGYSNSWNGITWSLNYSFNRNTTDARDSD--  565
            +L  + G++ L    ++YW++D   R +  GYS+SW+ ++W+++ S++  + ++ +++  
Sbjct  495  SLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWSYSNTARQGTGNNHA  554

Query  566  TVYSEDQVFSMSISVPLDRWLSSSRATYNLNTSKHGSTSHTVGLNGTALQDQNLNWSVQE  625
            +  + +Q++ +S+SVPL  W ++S ATY+++ + ++++SH +GL+GTAL+ +NL+W++ +
Sbjct  555  SDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSGTALERNNLSWNLMQ  614

Query  626  SETNHDGGNGGSASLDYQGTYARMNSAYSYDHDQRRVNYGISGGVVAHANGITLSQELGE  685
            S  +HD+  GG+ SL Y+G+Y+ +N++Y+Y ++ +R+NYGI GG++AH++G+TLSQELGE
Sbjct  615  SYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGILAHSEGVTLSQELGE  674

Query  686  TVALVEAPGASGVDITNQTGVSTDFRGYTVVPFISPYRENTLSLNTEQLPDDADVELSAK  745
            T+ALV APGA+G++I N  G +TD RGYTV   ++PY EN ++++ + ++  +++EL   
Sbjct  675  TIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISDNYFS-KSNIELDNT  733

Query  746  TVT--PTRGAIVRAHFDTRVGKRVLMTLTRRDGRPVPFGAIVT-DDKNAKTTSIVGDGGQ  802
             VT  PTRGA+V+A+F T+VG RVL  +   +G+PVPFGAI + +D +   ++IVGD G+
Sbjct  734  VVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDASLADSGIVGDRGE  793

Query  803  VYLAGMSLQGSATVKWG--ANKQCHTRWQLPESTSSSAIVEVNASCR  847
            +YL+G++ +G  T+ WG  A+ +C     ++ + S S+++E   +C+
Sbjct  794  LYLSGLPEKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVTCH  840

54) fimD1 in NC_017933


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score =  466 bits (1756),  Expect = 3e-132, Method: Compositional matrix adjust.
 Identities = 306/741 (42%), Positives = 511/741 (69%), Gaps = 22/741 (2%)

Query  6    FPELNADGKCARLSAIPK-ASSEFLFNAQKLVLSIP--QAALSPQARGYVDPALWDEGIP  62
            F +++ +  C  L + P+  +S   F+++KL L+I+  Q  + + A +Y+ P+ WDEGI 
Sbjct  109  FNDVD-ETVC--LDPAPRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRWDEGIN  165

Query  63   AAMLNYSMSGANNYADK--GANSNSQYANLRPGINLGAWRLRNYTTWNRDEKGKDKWDTV  120
            A  +NY  SG++       + ++++ Y NLR G+N+G+WRLRNY+T N  + G+   +++
Sbjct  166  ALTINYDFSGSHTLRSDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSD-GRAEYNSI  224

Query  121  YTYLQRNIVPLKAKLVAGDSSSPADVFDSISFRGAQLASDDDMIPESQRGYAPVVRGVAR  180
             T +QR+I +L+++++ GD+ +++D+FDS  +RGA+L +D+DM+P SQ G+APVVRG+A+
Sbjct  225  STWIQRDIAALRSQIMIGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAK  284

Query  181  TNAQIVIRQNGYVIYQSYVAAGAFEITDMYSTGGAGDLNVTVKEADGSEQHFVVPFASLP  240
            +NA ++IRQNGYVIYQS V+ GAFEITD+ +++ +GDL+VT+KE DGSEQ+F  P+ASL+
Sbjct  285  SNATVIIRQNGYVIYQSAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLA  344

Query  241  VLQREGRLKYALTGGQYR---SYDSSVEKTPFAQFTGIFGLPRGFTLYGGLQEASKYQAL  297
            +L+REG     ++ G+ R   ++ + V ++ + +     G+++G+TLYGG+Q A +Y + 
Sbjct  345  ILKREGLTDVDVSVGELRDEDGFTPDVLQAQILH-----GFSHGITLYGGMQAAENYGSA  399

Query  298  ALGLGKNMGAIGAISADVIQAWSRLKDMEKSSGQSWRIRYSKDFVETGTNFSIAGYRYST  357
            ALG+GK++GA+GAIS DV +A++ + + +  +GQS R+ YSK F +T+T++ + GYRYST
Sbjct  400  ALGVGKDLGALGAISFDVTHARANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYST  459

Query  358  AGFYSMQEVLDSYGNNSAMLD--RRRNRAElsisqslggslgslTASAVREDYWGKNKTM  415
             G+Y+++E      +     +   RR+R E +++QSLG   G+L  +  R++YW  +   
Sbjct  460  EGYYTLNEWASRRNSPEDFWETGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVE  519

Query  416  ESYNVGYNNSWRGISYGLTYTYSKNGSAGN-YNNSVSYDKDQIIALNISVPLERFLSNTW  474
               + GY++SW+ +S  ++ +YS+ +  G   N++     +QI  L++SVPL    +N+ 
Sbjct  520  RLMQFGYSSSWKRLSWNVSWSYSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSY  579

Query  475  ANYSMNDSKNNGTTHTAGMSGMALENNALSWNVQQGYGSDDIGYSGNMNADYKGTYGEMT  534
            A YS++++ N+G++H  G+SG ALE N LSWN+ Q+Y S+D   +GNM+  Y G+YG + 
Sbjct  580  ATYSVSQNDNSGSSHQLGLSGTALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVN  639

Query  535  AGYSYDKNGERLNYGLQGGIMAHEDGITLSQPLGETNVLVKAPGAGGVSIQNQTGAKTDF  594
            ++Y+Y +N++RLNYG++GGI+AH +G+TLSQ LGET  LVKAPGA+G+ I+N  GA TD 
Sbjct  640  GSYNYSQNSQRLNYGIRGGILAHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDW  699

Query  595  RGYTTVSNVTPYRKNDVTLNTESMP-DDVDLELTSRTVVPTRGAVVRAEYVANVGLRVLM  653
            RGYT  +++ PY  N V+++ +  +  +++L+ T  T+VPTRGAVV+AE+V++VG RVL 
Sbjct  700  RGYTVKTQLNPYDENRVAISDNYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLF  759

Query  654  TLLQANGQPVPFGATVTVPGQH-NQGFIVGDKGQVYITGLQPEGTLNVQWGQTNNEMCGV  712
             +L+ANG+PVPFGA  ++ +    ++ IVGD+G++Y++GL   G + + WG+  +  C  
Sbjct  760  RVLNANGKPVPFGAIAAIQDASLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIF  819

Query  713  NYHLPETETTSGILTFNGHCK  733
            NY ++  E+ SG++     C 
Sbjct  820  NYSFSTPESESGLIEQGVTCH  840

55) YE1112 in NC_008800


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score =  454 bits (1712),  Expect = 9e-129, Method: Compositional matrix adjust.
 Identities = 337/813 (42%), Positives = 574/813 (71%), Gaps = 34/813 (4%)

Query  56   FNPSSLEIKDASYAAIDLSIFSQSGAQLPGTYRVDIYLNGQQIETRDVTFIADN--GSLL  113
            FNP+ LEI++ S  ++D+  F+++    PG Y VDI++NG+ +E +DVTF+ DN  + L 
Sbjct  29   FNPALLEINHQS--GVDIRQFNRANLMPPGVYSVDIFINGKMFERQDVTFVQDNPDADLH  86

Query  114  AEITP--QQLADLGVKVAAFPALQQQPADLPVTQLGEFIPAASSSFDFNKQRLDVSIPQA  171
            A + +  + L+ +G+KV A+ ++++    + +      I ++S  FD +K +L++SI Q 
Sbjct  87   ACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDPAPR-IEGSSWQFDSDKLQLNISIHQI  145

Query  172  ALNSQARGYIDPKQWDQGIPALMVNYNLSGANSWQDNRPGSNSN-HFLNLRSGLNWGPWR  230
             +++ A +YI P +WD+GI AL +NY++SG+++ + +  + +++  +LNLR+GLN GPWR
Sbjct  146  YMDAMAYDYISPTRWDEGINALTINYDFSGSHTLRSDYGSQETDTSYLNLRNGLNIGPWR  205

Query  231  LRNYSTYSQSSNGEPQWNNLTNTLQRDIHAIKGQLTLGDSYTPGDILSGVPFRGAQLASD  290
            LRNYST + +S+G ++ N+++  +QRDI A+++Q+ +GD+ T++DI+ +  +RGA+L +D
Sbjct  206  LRNYSTLN-TSDGRAEYNSISTWIQRDIAALRSQIMIGDTWTASDIFDSTQIRGARLYTD  264

Query  291  DSMLPDSLRGFAPVVRGIADSNAQVTIRQNNNVIYQTYVPPGAFEINDLFPTSSSGDLEV  350
            + MLP S  GFAPVVRGIA SNA V IRQN  VIYQ+ VP GAFEI DL  +S++GDL+V
Sbjct  265  NDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQSAVPQGAFEITDLNTASTGGDLDV  324

Query  351  TIKETDGRERSFKQAFSSAPIMQREGSLKYALSAGQYRGGGNGSPTPNFAQTSLAYGMPY  410
            TIKE DG E+ F Q+++S +I++REG     +S G+ R  ++++ TP+  Q+ +  G + 
Sbjct  325  TIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGELR--DEDGFTPDVLQAQILHGFSH  382

Query  411  GFTLYNGLLISSDYQAGALGVGIGLGSMGSVSADVTQAKTTFSDQTTRQGQSYRLQYAKS  470
            G+TLY G+  + +Y ++ALGVG +LG++G++S DVT+A++ FS++ T  GQSYR+ Y+K 
Sbjct  383  GITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHARANFSHDDTETGQSYRFLYSKL  442

Query  471  ITATGTNFSLGSHRYSTEGFYDFSE-ANQLSDVGSIHSLGRNNNKRSRTQLHISQSLN-D  528
            +  T+T++ L + RYSTEG+Y ++E A++ +    +   G   N+RSR +  ++QSL  D
Sbjct  443  FDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWETG---NRRSRVEGTLTQSLGRD  499

Query  529  FGSLYLSAYQQDYWQRKGYERSATLGYNISLSGISYSLNYSYSQTPGQQQNDQRAS----  584
            +G+LYL+  +Q+YW+  + ER   +GY+ S   +S +++ SYS+T+ Q   +++AS    
Sbjct  500  YGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWSYSNTARQGTGNNHASDNTS  559

Query  585  -----LSVNIPLGRHNW-----ANYSINTSKGGATSQQLGLSGSALADDNLSYNLQQsrs  634
                 LS+++PL+   W     A YS++ +  +++S+QLGLSG+AL  +NLS NL QS +
Sbjct  560  EQIYMLSLSVPLS--GWWGNSYATYSVSQNDNSGSSHQLGLSGTALERNNLSWNLMQSYN  617

Query  635  nhgggnsgslsssysgaygQMNAGYSFGSNSRQLNYGLSGGVLAHPYGVTLSQSQSDTLV  694
            +H++  +G++S +Y G+YG +N++Y+++ NS++LNYG+ GG+LAH+ GVTLSQ  ++T+ 
Sbjct  618  SHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGILAHSEGVTLSQELGETIA  677

Query  695  LVRAPgasgvgvgngrgvKTDWRGYAVVPYASAYRQNSVALDTQSMGDS-IDMDITSQNV  753
            LV+APGA+G+ ++N RG  TDWRGY+V    ++Y +N VA+  +  + S I++D T   +
Sbjct  678  LVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISDNYFSKSNIELDNTVVTM  737

Query  754  VPTRGAVVLANFQPRLGSRVLIN-LSYQGKPVPFGAMASLQDDGADSNSIVGDGGQVYLS  812
            VPTRGAVV A+F  ++G RVL+  L+ +GKPVPFGA+A++QD +   ++IVGD G++YLS
Sbjct  738  VPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDASLADSGIVGDRGELYLS  797

Query  813  GVPDNGNLLVQWGNQEKQQCQVKFTLPAADTNT  845
            G+P++G++ + WG++   +C  +++++++++++
Sbjct  798  GLPEKGQVTLSWGENASTKCIFNYSFSTPESES  830

56) A79E_4489 in NC_018522


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score =  451 bits (1698),  Expect = 1e-127, Method: Compositional matrix adjust.
 Identities = 343/821 (42%), Positives = 556/821 (68%), Gaps = 34/821 (4%)

Query  34   TFNSHALEIDNPGQPVADLSTFAEADGQLPGVYRVTVYVNGEQQGEAQDIAFT-AGPDKK  92
             FN+  LEI++  Q+  D+  F  A+   PGVY V +++NG +  E QD++F    PD  
Sbjct  28   VFNPALLEINH--QSGVDIRQFNRANLMPPGVYSVDIFING-KMFERQDVTFVQDNPDAD  84

Query  93   LRAQITPAM--LKAWGVKTdafpalaalppdkplkdIGRYIPMASSELRFSKLQLNVSIP  150
            L+A + +    L + G+K DA+ ++  +     L    R I  +S ++   KLQLN+SI 
Sbjct  85   LHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDPAPR-IEGSSWQFDSDKLQLNISIH  143

Query  151  QAAMSAAARGQVDPSQWDEGVPAALLNYSLSGSNTWR-DHQSGSEDNYYANLQSGLNLGA  209
            Q  M A A + + P++WDEG+ A  +NY +SGS+T R D  S   D  Y NL++GLN+G+
Sbjct  144  QIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLRSDYGSQETDTSYLNLRNGLNIGP  203

Query  210  WRLRNYSTWNYDEDNGSHWDSVNTYLQRDIQRLQGQLTLGDSYTPSDIFDSVQFRGAQLA  269
            WRLRNYST N  ++ +   +S++T +QRDI  L++Q+ +GD+ T+SDIFDS Q+RGA+L 
Sbjct  204  WRLRNYSTLNTSDGRAEY-NSISTWIQRDIAALRSQIMIGDTWTASDIFDSTQIRGARLY  262

Query  270  SDDNMLPDSLRGFAPVIRGIAQSNAQVTVKQNGYIIYQSYVAPGAFAISDLYPTSGSGDL  329
            +D++MLP S  GFAPV+RGIA+SNA V ++QNGY+IYQS V+ GAF I+DL  +S +GDL
Sbjct  263  TDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQSAVPQGAFEITDLNTASTGGDL  322

Query  330  EVTIKEADGSERTFIQPFSAVPIMQREGRLKYALTAGKYRSGNNDSDEPQFGQVTAIYGL  389
            +VTIKE DGSE+ F QP+++++I++REG     ++ G  R  ++D+  P+  Q   + G+
Sbjct  323  DVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGELR--DEDGFTPDVLQAQILHGF  380

Query  390  PHAITIYGGTLYSEDYQsgaaglgfglgtlgslsVDITAAHTTLNNDETHDGQSYRVQYS  449
            +H+IT+YGG   +E+Y S+A G+G +LG+LG++S D+T A++ +++D+T+ GQSYR  YS
Sbjct  381  SHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHARANFSHDDTETGQSYRFLYS  440

Query  450  KDFQATDTSFTLAAYRYSTEGFYTFQEANDLRTDSDDGWRMQYNKRQKLQLDLSQSLG-S  508
            K F+ TDTS+ L +YRYSTEG+YT++E    R  ++D W    N+R +++  L+QSLG  
Sbjct  441  KLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWETG-NRRSRVEGTLTQSLGRD  499

Query  509  YGSFFISGYQQDYWHEDGYERTL----STGWN----------GNINGVSYSDYPDSTQPA  554
            YG+++++  +Q+YWH D+ ER +    S++W+          +N    + ++   S + +
Sbjct  500  YGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWSYSNTARQGTGNNHASDNTS  559

Query  555  DQQLAFSMQVPLSRFLPNAWASYSINTAKHGDTRQQVGLNGTALADNNLSYSLQQSYTNH  614
            +Q   +S+ VPLS    N+ A+YS++   ++++ +Q+GL+GTAL  NNLS +L QSY +H
Sbjct  560  EQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSGTALERNNLSWNLMQSYNSH  619

Query  615  GVGGSGNINADYKGGWGEVTGGYNYDDDSQQVNYGLKGGIVAHPHGITFGQPLGDSLAVV  674
            +   +GN++  Y G+ G V G+YNY ++SQ++NYG++GGI+AH++G+T++Q LG+++A+V
Sbjct  620  DDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGILAHSEGVTLSQELGETIALV  679

Query  675  SAPGAEDAKVQNNTGVYTDWRGYAVVPYVNPYKKNRIALDTSTLG-DEVDIDTAVQTVTP  733
             APGA +  ++N  G  TDWRGY+V   +NPY  NR+A+  + ++  ++++D +V T+ P
Sbjct  680  KAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISDNYFSKSNIELDNTVVTMVP  739

Query  734  TQGAVVMADFNTRVGRRVLMTLLY-RGLPVPFGAQAKLKEGG---SGIVGDDGQVYLTGV  789
            T+GAVV A+F T+VG RVL  +L   G PVPFGA A +++++   SGIVGD G++YL+G+
Sbjct  740  TRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDASLADSGIVGDRGELYLSGL  799

Query  790  PDEGDIAVSW--NGTRQCMVLYRLPENAGNVPVTETEQECR  828
            P+ G++++SW  N++ +C+  Y ++   ++  + E    C+
Sbjct  800  PEKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVTCH  840

57) KP1_0600 in NC_012731


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score =  451 bits (1699),  Expect = 9e-128, Method: Compositional matrix adjust.
 Identities = 343/821 (42%), Positives = 556/821 (68%), Gaps = 34/821 (4%)

Query  35   TFNSHALEIDNPGQPVADLSTFAEADGQLPGVYRVTVYVNGEQQGEAQDIAFT-AGPDKK  93
             FN+  LEI++  Q+  D+  F  A+   PGVY V +++NG +  E QD++F    PD  
Sbjct  28   VFNPALLEINH--QSGVDIRQFNRANLMPPGVYSVDIFING-KMFERQDVTFVQDNPDAD  84

Query  94   LRAQITPAM--LKAWGVKTdafpalaalppdkplkdIGRYIPMASSELRFSKLQLNVSIP  151
            L+A + +    L + G+K DA+ ++  +     L    R I  +S ++   KLQLN+SI 
Sbjct  85   LHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDPAPR-IEGSSWQFDSDKLQLNISIH  143

Query  152  QAAMSAAARGQVDPSQWDEGVPAALLNYSLSGSNTWR-DHQSGSEDNYYANLQSGLNLGA  210
            Q  M A A + + P++WDEG+ A  +NY +SGS+T R D  S   D  Y NL++GLN+G+
Sbjct  144  QIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLRSDYGSQETDTSYLNLRNGLNIGP  203

Query  211  WRLRNYSTWNYDEDNGSHWDSVNTYLQRDIQRLQGQLTLGDSYTPSDIFDSVQFRGAQLA  270
            WRLRNYST N  ++ +   +S++T +QRDI  L++Q+ +GD+ T+SDIFDS Q+RGA+L 
Sbjct  204  WRLRNYSTLNTSDGRAEY-NSISTWIQRDIAALRSQIMIGDTWTASDIFDSTQIRGARLY  262

Query  271  SDDNMLPDSLRGFAPVIRGIAQSNAQVTVKQNGYIIYQSYVAPGAFAISDLYPTSGSGDL  330
            +D++MLP S  GFAPV+RGIA+SNA V ++QNGY+IYQS V+ GAF I+DL  +S +GDL
Sbjct  263  TDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQSAVPQGAFEITDLNTASTGGDL  322

Query  331  EVTIKEADGSERTFIQPFSAVPIMQREGRLKYALTAGKYRSGNNDSDEPQFGQVTAIYGL  390
            +VTIKE DGSE+ F QP+++++I++REG     ++ G  R  ++D+  P+  Q   + G+
Sbjct  323  DVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGELR--DEDGFTPDVLQAQILHGF  380

Query  391  PHAITIYGGTLYSEDYQsgaaglgfglgtlgslsVDITAAHTTLNNDETHDGQSYRVQYS  450
            +H+IT+YGG   +E+Y S+A G+G +LG+LG++S D+T A++ +++D+T+ GQSYR  YS
Sbjct  381  SHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHARANFSHDDTETGQSYRFLYS  440

Query  451  KDFQATDTSFTLAAYRYSTEGFYTFQEANDLRTDSDDGWRMQYNKRQKLQLDLSQSLG-S  509
            K F+ TDTS+ L +YRYSTEG+YT++E    R  ++D W    N+R +++  L+QSLG  
Sbjct  441  KLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWETG-NRRSRVEGTLTQSLGRD  499

Query  510  YGSFFISGYQQDYWHEDGYERTL----STGWN----------GNINGVSYSDYPDSTQPA  555
            YG+++++  +Q+YWH D+ ER +    S++W+          +N    + ++   S + +
Sbjct  500  YGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWSYSNTARQGTGNNHASDNTS  559

Query  556  DQQLAFSMQVPLSRFLPNAWASYSINTAKHGDTRQQVGLNGTALADNNLSYSLQQSYTNH  615
            +Q   +S+ VPLS    N+ A+YS++   ++++ +Q+GL+GTAL  NNLS +L QSY +H
Sbjct  560  EQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSGTALERNNLSWNLMQSYNSH  619

Query  616  GVGGSGNINADYKGGWGEVTGGYNYDDDSQQVNYGLKGGIVAHPHGITFGQPLGDSLAVV  675
            +   +GN++  Y G+ G V G+YNY ++SQ++NYG++GGI+AH++G+T++Q LG+++A+V
Sbjct  620  DDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGILAHSEGVTLSQELGETIALV  679

Query  676  SAPGAEDAKVQNNTGVYTDWRGYAVVPYVNPYKKNRIALDTSTLG-DEVDIDTAVQTVTP  734
             APGA +  ++N  G  TDWRGY+V   +NPY  NR+A+  + ++  ++++D +V T+ P
Sbjct  680  KAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISDNYFSKSNIELDNTVVTMVP  739

Query  735  TQGAVVMADFNTRVGRRVLMTLLY-RGLPVPFGAQAKLKEGG---SGIVGDDGQVYLTGV  790
            T+GAVV A+F T+VG RVL  +L   G PVPFGA A +++++   SGIVGD G++YL+G+
Sbjct  740  TRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDASLADSGIVGDRGELYLSGL  799

Query  791  PDEGDIAVSW--NGTRQCMVLYRLPENAGNVPVTETEQECR  829
            P+ G++++SW  N++ +C+  Y ++   ++  + E    C+
Sbjct  800  PEKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVTCH  840

58) A464_4502 in NC_021870


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score =  449 bits (1692),  Expect = 3e-127, Method: Compositional matrix adjust.
 Identities = 340/821 (42%), Positives = 558/821 (68%), Gaps = 28/821 (3%)

Query  34   TFNTHALELDSPGQAVVDLSAFSEADGQLPGTYRVTVYVNGEQQGEAQDIAFV-TGADKK  92
             FN   LE++   Q+ VD+  F+ A+   PG Y V +++NG +  E QD++FV   +D  
Sbjct  28   VFNPALLEINH--QSGVDIRQFNRANLMPPGVYSVDIFING-KMFERQDVTFVQDNPDAD  84

Query  93   LTAQLTP--SMLKAWGVNTaafpalaalpadkplEDIGRYIPMASSELRFSKLQLNLSIP  150
            L A + +    L + G++  A+ ++  +     L+   R I  +S ++   KLQLN+SI 
Sbjct  85   LHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDPAPR-IEGSSWQFDSDKLQLNISIH  143

Query  151  QAAMSATARGWVDPSEWDEGVPAALLNYNLSGSNTWRDG-ENGSDDNYYANLQSGLNLGA  209
            Q  M A A + + P+ WDEG+ A  +NY++SGS+T R +  +   D  Y NL++GLN+G+
Sbjct  144  QIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLRSDYGSQETDTSYLNLRNGLNIGP  203

Query  210  WRLRNYSTWNYDEDNGSHWDSVNTYLQRDIQRLQGQLTLGDSYTPSDIFDSVQFRGAQLA  269
            WRLRNYST N  ++ +   +S++T +QRDI  L++Q+ +GD+ T+SDIFDS Q+RGA+L 
Sbjct  204  WRLRNYSTLNTSDGRAEY-NSISTWIQRDIAALRSQIMIGDTWTASDIFDSTQIRGARLY  262

Query  270  SDDNMLPDSLRGFAPIIRGIAQSNAQVTIKQNGYTIYQSYVAPGAFAISDLYPTSGSGDL  329
            +D++MLP S  GFAP++RGIA+SNA V I+QNGY IYQS V+ GAF I+DL  +S +GDL
Sbjct  263  TDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQSAVPQGAFEITDLNTASTGGDL  322

Query  330  EVTIKEADGSERTFIQPFSAVPIMQREGRLKYALTAGKYRSGNSDSDEPEFGQITAIYGL  389
            +VTIKE DGSE+ F QP+++++I++REG     ++ G  R  + D+  P+  Q   + G+
Sbjct  323  DVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGELR--DEDGFTPDVLQAQILHGF  380

Query  390  PHAITIYGGTLYSEDYQSgaaglgfglgelgSVSADITAAHTTLNNDETHDGQSYRVQYS  449
            +H+IT+YGG   +E+Y S+A G+G +LG LG++S D+T A++ +++D+T+ GQSYR  YS
Sbjct  381  SHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHARANFSHDDTETGQSYRFLYS  440

Query  450  KDFQATDTSFTLAAYRYSTEGFYTFQEANDLRSDSDDGWRLTYNKRQKLQFDLTQSIG-S  508
            K F+ TDTS+ L +YRYSTEG+YT++E    R+ ++D W    N+R +++  LTQS+G  
Sbjct  441  KLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWETG-NRRSRVEGTLTQSLGRD  499

Query  509  YGSFFVSGYQQDYWHEDGYERTL----STGWNG---NIN-GIsysvsysysdypdsTQPA  560
            YG+++++  +Q+YWH D+ ER +    S++W+    N++ + S +   + ++   S + +
Sbjct  500  YGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWSYSNTARQGTGNNHASDNTS  559

Query  561  DQQLAFSIQVPLSRFMPNAWASYSVNTAKHGDTRQQVGLNGTALADNNLSYSLQQSYTNH  620
            +Q   +S+ VPLS    N+ A+YSV+   ++++ +Q+GL+GTAL  NNLS +L QSY +H
Sbjct  560  EQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSGTALERNNLSWNLMQSYNSH  619

Query  621  GTGGSGNINADYKGGQGEITGGYNYDDDTQQVNYGLKGGIVVHPHGVTLSQPLGDSLAIV  680
            +   +GN++  Y G+ G + G+YNY +++Q++NYG++GGI+ H++GVTLSQ LG+++A+V
Sbjct  620  DDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGILAHSEGVTLSQELGETIALV  679

Query  681  KAPGADDAKVQNNTGVYTDWRGYAVVPYVNTYRKNRIALDTSTLGDG-VDIDTAVQTVTP  739
            KAPGA +  ++N  G  TDWRGY+V   +N Y  NR+A+  + ++ + +++D +V T+ P
Sbjct  680  KAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISDNYFSKSNIELDNTVVTMVP  739

Query  740  TQGAVVMADFNTRVGRRVLMTLLY-RGLPVPFGAQAKMKEGG---SGIVGDDGQVYLTGV  795
            T+GAVV A+F T+VG RVL  +L   G PVPFGA A +++++   SGIVGD G++YL+G+
Sbjct  740  TRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDASLADSGIVGDRGELYLSGL  799

Query  796  PDEGDITVNW--NGKQQCVVHYRLPESAANAPVTETEQECR  834
            P+ G++T++W  N+  +C+ +Y ++ + +++ + E    C+
Sbjct  800  PEKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVTCH  840

59) SARI_01797 in NC_010067


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score =  449 bits (1690),  Expect = 5e-127, Method: Compositional matrix adjust.
 Identities = 334/814 (42%), Positives = 542/814 (67%), Gaps = 29/814 (3%)

Query  12   TDLSAFEEGVGQMPGTYHVDVVINNAAQGTYDIPFSMQKNAQGQQSLQPCLSI--DMLKS  69
             D+  F+ +    PG Y VD+ IN       D+ F +Q N++++  L++C+      L S
Sbjct  42   VDIRQFNRANLMPPGVYSVDIFINGKMFERQDVTF-VQDNPDAD--LHACFIAIKKTLSS  98

Query  70   FRIRTELFPQLVGDGQCAVLNAIP-MASAEFDFNHQRLLLSIP--QAAVSTMARGWVAPD  126
            F I+ + +  + + ++   L++ P + ++  +F+ ++L L+I+  Q  + +MA + ++P 
Sbjct  99   FGIKVDALKSFNDVDETVCLDPAPRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPT  158

Query  127  RLDEGINALLLNYTFTGGNTSARQSGNSDSDSYFLNLRPGLNLGPWRLRNYSTWNQNKTG  186
            R DEGINAL +NY F+G++T   + G+ ++D+ +LNLR GLN+GPWRLRNYST    +T+
Sbjct  159  RWDEGINALTINYDFSGSHTLRSDYGSQETDTSYLNLRNGLNIGPWRLRNYST---LNTS  215

Query  187  DTKEESWDSVYTYAQRDIIALKSQLTLGDSTAPSDMFDSVPFRGVQLASDDDMLPESLRG  246
            D + E  +S+ T  QRDI AL+SQ+ +GD+ ++SD+FDS  +RG +L +D+DMLP S  G
Sbjct  216  DGRAEY-NSISTWIQRDIAALRSQIMIGDTWTASDIFDSTQIRGARLYTDNDMLPASQNG  274

Query  247  YAPIIRGIARTNAQVSVKQNGYVIYQTYVSPGAFEIADMFPTGSSGDLDVTIKETDGSEQ  306
            +AP++RGIA++NA V ++QNGYVIYQ+ V+ GAFEI+D+  ++++GDLDVTIKE DGSEQ
Sbjct  275  FAPVVRGIAKSNATVIIRQNGYVIYQSAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQ  334

Query  307  HQVIPFASLPVLQREGRLKYSVTSGQYRPYDGDIDKEWFSQATAIYGLPAGFTLYGGGQF  366
            +   P+ASL++L+REG     V+ G+ R  ++++  +   QA  + G++ G+TLYGG Q 
Sbjct  335  RFTQPYASLAILKREGLTDVDVSVGELRD-EDGFTPD-VLQAQILHGFSHGITLYGGMQA  392

Query  367  AQHYQSLLAGFGKNLGELGAFSVDGTQAWSTQQDTDKESGQSWRVRYSKNMLATGTNisi  426
            A++Y S   G GK+LG LGA+S D T+A++   + D E+GQS R  YSK    T+T++ +
Sbjct  393  AENYGSAALGVGKDLGALGAISFDVTHARANFSHDDTETGQSYRFLYSKLFDDTDTSLRL  452

Query  427  sgyrystsgyyslsETLDTW------RENEWKTSNERRRNRAEIMLNQSLGDVAGSLSVN  480
             GYRYST GYY    TL+ W       E+ W T+N  RR+R E  L QSLG   G+L + 
Sbjct  453  VGYRYSTEGYY----TLNEWASRRNSPEDFWETGN--RRSRVEGTLTQSLGRDYGNLYLT  506

Query  481  AVSEDYWNSDREMRSIGVGYSNSFSGITWNLNYSYNRNTTAGRDSDKV--YSEDQVFTLN  538
               ++YW++D   R +  GYS+S   ++WN++ SY+  +  G +++     + +Q++ L+
Sbjct  507  LSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWSYSNTARQGTGNNHASDNTSEQIYMLS  566

Query  539  FNIPLDCWLSNSWASYSLNTSKRGDTSHTVGLNGTALENQNLNWSIQESQTNHGQGNGGY  598
            +++PL  W +NS A+YS++ +  +++SH +GL+GTALE +NL+W++ +S  +H++  GG 
Sbjct  567  LSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSGTALERNNLSWNLMQSYNSHDDEVGGN  626

Query  599  ANLDYQGTYARVNAGYGYDHDQRNLNYSIDGGIIAHAHGLTFSQSLGETAALVEAPGVSG  658
             +L Y+G+Y+ VN++Y Y ++ + LNY+I GGI+AH++G+T+SQ LGET ALV APG +G
Sbjct  627  MSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGILAHSEGVTLSQELGETIALVKAPGAAG  686

Query  659  VEVTNQTGVKTDFRGYTVVPYLSPYRENTVGLNPETLP-DDADLTLTNQILTPTRGAIVR  717
            +E+ N  G  TD RGYTV   L+PY EN V+++ + ++  + +L  T   + PTRGA+V+
Sbjct  687  LEIDNMRGAATDWRGYTVKTQLNPYDENRVAISDNYFSKSNIELDNTVVTMVPTRGAVVK  746

Query  718  ARFDTRVGKRVLMTLTRSNGKTVPFGAIVSVHGENQAQSFIVGDAGQVYLTGMPLSGSLL  777
            A F T+VG RVL  +  +NGK VPFGAI ++++ + A+S IVGD G++YL+G+P  G + 
Sbjct  747  AEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDASLADSGIVGDRGELYLSGLPEKGQVT  806

Query  778  AKWGNAASEICKVTFQLPEEDNTIGVMQTNARCN  811
              WG+ AS  C   + ++  ++  G+++    C+
Sbjct  807  LSWGENASTKCIFNYSFSTPESESGLIEQGVTCH  840

60) fimD2 in NC_017631


> NC_004337_P2|27|G21|24114952|NP_709462.1|Shigella_flexneri_2a_str._301|+|25420..27942|lpfC|SF3723|long 
polar fimbriae
Length=840

 Score =  371 bits (1395),  Expect = 1e-103, Method: Compositional matrix adjust.
 Identities = 260/649 (41%), Positives = 429/649 (67%), Gaps = 44/649 (6%)

Query  206  QHINTWLERDIIPLRSRLTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFASVIHG  265
            + I+TW++RDI +LRS++ +GD  T +DIFD+ ++RGA+L +D++MLP SQ GFA+V++G
Sbjct  222  NSISTWIQRDIAALRSQIMIGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRG  281

Query  266  IARGTAQVTIKQNGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYS  325
            IA++ A V I+QNGY IY+S+VP G+F I D+ +A+ +GDL+VTIKE DGS Q FT PY+
Sbjct  282  IAKSNATVIIRQNGYVIYQSAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYA  341

Query  326  SVPLLQREGHTRYSITAGEYRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAF  385
            S+++L+REG T   ++ GE R  ++    P  +Q+ +LHG++ G T+YGG Q A+ Y + 
Sbjct  342  SLAILKREGLTDVDVSVGELRDEDGF--TPDVLQAQILHGFSHGITLYGGMQAAENYGSA  399

Query  386  NFGIGKNMGALGALSVDMTQANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYST  445
             +G+GK++GALGA+S D+T+A + +++D  + GQS RFLY+K +++++T+++LVGYRYST
Sbjct  400  ALGVGKDLGALGAISFDVTHARANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYST  459

Query  446  SGYFNFADTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRT-ST  504
             GY+ + + +  R +                  D+ + + N+R++++ T+TQ LGR  + 
Sbjct  460  EGYYTLNEWASRRNSP----------------EDFWETG-NRRSRVEGTLTQSLGRDYGN  502

Query  505  LYLSGSHQTYWGTSNVDEQFQAGLNTAFEDINWTLSYSLTKNAWQ---------KGRDQM  555
            LYL+ S+Q YW T +V+   Q G +++   ++W +S S ++ A+Q         +  +Q+
Sbjct  503  LYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWSYSNTARQGTGNNHASDNTSEQI  562

Query  556  LALNVNIPFSHWLRSDSKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQt  615
              L++++P+S W        W ++ A+YS+S++ N+  ++  G+ GT LE NNLS ++  
Sbjct  563  YMLSLSVPLSGW--------WGNSYATYSVSQNDNSGSSHQLGLSGTALERNNLSWNL--  612

Query  616  gyagggdgnsgstgyaTLNYRGGYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQP  675
               +    +    G  +L Y G+YG  N +Y+ S++ ++L YG+ GG+LAH++GVTL+Q 
Sbjct  613  -MQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGILAHSEGVTLSQE  671

Query  676  LNDTVVLVKAPGAKDAKVENQTGVRTDWRGYAVLPYATEYRENRVALDTN-Tladnvdld  734
            L +T+ LVKAPGA +  ++N  G  TDWRGY+V      Y ENRVA+  N     N++LD
Sbjct  672  LGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISDNYFSKSNIELD  731

Query  735  navanvvPTRGAIVRAEFKARVGIKLLM-TLTHNNKPLPFGAMVTSESS--QSSGIVADN  791
            N+V  +VPTRGA+V+AEF ++VG ++L   L  N KP+PFGA+ + + +    SGIV+D 
Sbjct  732  NTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDASLADSGIVGDR  791

Query  792  GQVYLSGMPLAGKVQVKWGEEENAHCVANYQLPPESQQQLLTQLSAECR  840
            G++YLSG+P  G+V + WGE+ ++ C+ NY ++    +  L + +  C+
Sbjct  792  GELYLSGLPEKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVTCH  840