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Homologs of SP_1056 gene of NC_003028_P1

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) SP_1056
( NP_345530.1 )

Tn5252, relaxase

NC_003028
(Streptococcus pneumoniae TIGR4)

0.0

100

2) SPG_1250
( YP_002037958.1 )

Tn5253 relaxase

NC_011072
(Streptococcus pneumoniae G54)

0.0

3) SPP_1196
( YP_002738341.1 )

relaxase

NC_012467
(Streptococcus pneumoniae P1031)

2e-179

4) SP670_1119
( YP_003879282.1 )

relaxase

NC_014498
(Streptococcus pneumoniae 670-6B)

5e-178

5) SII_0668
( YP_008496850.1 )

relaxase

NC_022237
(Streptococcus intermedius C270)

3e-177

6) SPN23F_12430
( YP_002511177.1 )

relaxase

NC_011900
(Streptococcus pneumoniae ATCC 700669)

5e-175

7) SPCG_1276
( YP_001835993.1 )

Tn5252, relaxase

NC_010582
(Streptococcus pneumoniae CGSP14)

5e-175

8) gbs1338
( NP_735775.1 )

hypothetical protein

NC_004368
(Streptococcus agalactiae NEM316)

1e-162

9) SANR_1168
( YP_008500886.1 )

Relaxase/mobilization nuclease family protein

NC_022239
(Streptococcus anginosus C238)

8e-162

10) SSU98_0919
( YP_001200477.1 )

chromosome segregation ATPase

NC_009443
(Streptococcus suis 98HAH33)

1e-158

11) SMA_1385
( YP_005095004.1 )

putative relaxase

NC_016749
(Streptococcus macedonicus ACA-DC 198)

4e-157

12) SSUBM407_0993
( YP_003028736.1 )

relaxase

NC_012926
(Streptococcus suis BM407)

2e-155

13) SSU05_0913
( YP_001198279.1 )

chromosome segregation ATPase

NC_009442
(Streptococcus suis 05ZYH33)

6e-155

14) SSUSC84_0819
( YP_003024833.1 )

relaxase

NC_012924
(Streptococcus suis SC84)

6e-155

15) SSUJS14_0617
( YP_006075979.1 )

relaxase

NC_017618
(Streptococcus suis JS14)

6e-155

16) NJAUSS_0605
( YP_007570560.1 )

chromosome segregation ATPase

NC_020526
(Streptococcus suis SC070731)

6e-155

17) SGPB_1112
( YP_004559257.1 )

Tn5252 ORF4 relaxase

NC_015600
(Streptococcus pasteurianus ATCC 43144)

1e-154

18) SSUBM407_0508
( YP_003028271.1 )

relaxase protein

NC_012926
(Streptococcus suis BM407)

4e-152

19) STH8232_0691
( YP_006040369.1 )

tn5252, relaxase

NC_017581
(Streptococcus thermophilus JIM 8232)

1e-151

20) SPCG_1035
( YP_001835752.1 )

Tn5252, relaxase

NC_010582
(Streptococcus pneumoniae CGSP14)

2e-151

21) BSA_13450
( YP_008084994.1 )

Tn5252, relaxase

NC_021485
(Streptococcus agalactiae 09mas018883)

3e-151

22) Spaf_1098
( YP_006309900.1 )

relaxase

NC_017905
(Streptococcus parasanguinis FW213)

2e-145

23) SSU12_0861
( YP_006078292.1 )

putative relaxase protein

NC_017619
(Streptococcus suis SS12)

3e-145

24) SSUD9_1035
( YP_006080486.1 )

Tn5252, relaxase

NC_017620
(Streptococcus suis D9)

3e-139

25) SAG1250
( NP_688252.1 )

Tn5252, relaxase

NC_004116
(Streptococcus agalactiae 2603V/R)

2e-134

26) SDE12394_04825
( YP_006013039.1 )

Tn5252, relaxase

NC_017567
(Streptococcus dysgalactiae ATCC 12394)

2e-134

27) MSA_13860
( YP_008087124.1 )

Tn5252, relaxase

NC_021486
(Streptococcus agalactiae ILRI005)

1e-114

28) SDEG_1335
( YP_002997044.1 )

relaxase

NC_012891
(Streptococcus dysgalactiae GGS_124)

3e-94

• Sequence Alignments

1) SP_1056 in NC_003028


> NC_003028_P1|27|G26|15900926|NP_345530.1|Streptococcus_pneumoniae_TIGR4|+|19223..21046|-|SP_1056|Tn5252, 
relaxase
Length=607

 Score =  952 bits (3607),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 607/607 (100%), Positives = 607/607 (100%), Gaps = 0/607 (0%)

Query  1    MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI  60
            MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI
Sbjct  1    MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI  60

Query  61   SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV  120
            SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV
Sbjct  61   SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV  120

Query  121  ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQR  180
            ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQR
Sbjct  121  ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQR  180

Query  181  YEVYRKTNHKYELKQRLYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQV  240
            YEVYRKTNHKYELKQRLYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQV
Sbjct  181  YEVYRKTNHKYELKQRLYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQV  240

Query  241  VRGKQLNRKQPYTEEFFKNYFAKREIESLMEFLLLKVENMDDLLQKAKLFGLTINPKQKH  300
            VRGKQLNRKQPYTEEFFKNYFAKREIESLMEFLLLKVENMDDLLQKAKLFGLTINPKQKH
Sbjct  241  VRGKQLNRKQPYTEEFFKNYFAKREIESLMEFLLLKVENMDDLLQKAKLFGLTINPKQKH  300

Query  301  VSFQFAGVEVKETELDQKNLYDVEFFQDYFKNRKDWQAPETEDFVQLYQeeklskekelp  360
            VSFQFAGVEVKETELDQKNLYDVEFFQDYFKNRKDWQAPETEDFVQLYQEEKLSKEKELP
Sbjct  301  VSFQFAGVEVKETELDQKNLYDVEFFQDYFKNRKDWQAPETEDFVQLYQEEKLSKEKELP  360

Query  361  sdekFWESYQEFKSNRDAVHEFEVELSLNQIEKVVDDGIYVKVKFGIRQEGLIFVPNMQL  420
            SDEKFWESYQEFKSNRDAVHEFEVELSLNQIEKVVDDGIYVKVKFGIRQEGLIFVPNMQL
Sbjct  361  SDEKFWESYQEFKSNRDAVHEFEVELSLNQIEKVVDDGIYVKVKFGIRQEGLIFVPNMQL  420

Query  421  DMEEDKVKVFIRETSSYYVYHKDAAEKNCYMKGRTLIRQFSYENQTIPLRRKATVDMIKE  480
            DMEEDKVKVFIRETSSYYVYHKDAAEKNCYMKGRTLIRQFSYENQTIPLRRKATVDMIKE
Sbjct  421  DMEEDKVKVFIRETSSYYVYHKDAAEKNCYMKGRTLIRQFSYENQTIPLRRKATVDMIKE  480

Query  481  KIAEVDALIELEVENQSYVTIKDELVHELAASELRINELQERMSTLNQVAEYLLASVESK  540
            KIAEVDALIELEVENQSYVTIKDELVHELAASELRINELQERMSTLNQVAEYLLASVESK
Sbjct  481  KIAEVDALIELEVENQSYVTIKDELVHELAASELRINELQERMSTLNQVAEYLLASVESK  540

Query  541  QEMKLNLSKLNITENISANIVEKKLKSLGNQLELERGRYEKMVVRLDKFINRLNTGLSKG  600
            QEMKLNLSKLNITENISANIVEKKLKSLGNQLELERGRYEKMVVRLDKFINRLNTGLSKG
Sbjct  541  QEMKLNLSKLNITENISANIVEKKLKSLGNQLELERGRYEKMVVRLDKFINRLNTGLSKG  600

Query  601  DGIDFQK  607
            DGIDFQK
Sbjct  601  DGIDFQK  607

2) SPG_1250 in NC_011072


> NC_003028_P1|27|G26|15900926|NP_345530.1|Streptococcus_pneumoniae_TIGR4|+|19223..21046|-|SP_1056|Tn5252, 
relaxase
Length=607

 Score =  670 bits (2533),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 398/445 (90%), Positives = 432/445 (98%), Gaps = 0/445 (0%)

Query  1    MVITKHFAIHGKSYRRKLIKYILNPDKTKNLTLVSDYDMRNFLDFPSYEEMVQMYHENFI  60
            MVITKHFAIHGKSYRRKLIKYILNP+KT+NL+LVSDY+M+NFLDFPSYEEMVQMYHENFI
Sbjct  1    MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI  60

Query  61   NNDTLYNFRHDRLEEKQRQIHAHHIIQSFSPEDNLTPEQINQIGYETMKELTSGKFRFIV  120
            +NDTLY+FRHDR+EE+QR+IHAHHIIQSFSPED++TPEQIN+IGYET+KELT+GKFRFIV
Sbjct  61   SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV  120

Query  121  ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQQ  180
            ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQ+
Sbjct  121  ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQR  180

Query  181  YEVYRKTNHKYELKQRLYFLMEHSRDFEDFKKNAPLLHVEMDFSHKHATFFMTDSSMKQV  240
            YEVYRKTNHKYELKQRLYFLMEHSRDFEDFKKNAPLLHVEMDF HKHATFF+TDS+MKQV
Sbjct  181  YEVYRKTNHKYELKQRLYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQV  240

Query  241  VRGNKLNRKQPYTEEFFKNYFAKREMEELMEFLLSKAENIDDLIETAKLFDLTIIPKQKH  300
            VRG++LNRKQPYTEEFFKNYFAKRE+E LMEFLL K EN+DDL++ AKLF+LTI PKQKH
Sbjct  241  VRGKQLNRKQPYTEEFFKNYFAKREIESLMEFLLLKVENMDDLLQKAKLFGLTINPKQKH  300

Query  301  VYFQLAGVEVKETELDQKNLYGVEFFQDYFESRKDWQNPEIEDLVQFYQEEKFSKEKELP  360
            V FQ+AGVEVKETELDQKNLY+VEFFQDYF +RKDWQ PE ED+VQ+YQEEK+SKEKELP
Sbjct  301  VSFQFAGVEVKETELDQKNLYDVEFFQDYFKNRKDWQAPETEDFVQLYQEEKLSKEKELP  360

Query  361  RDEKFWEFYQEFKSNRDAVHEFEVELSLNQIEKVVDDGIYIKVKFGIRQEGLIFVPNMQL  420
             DEKFWE YQEFKSNRDAVHEFEVELSLNQIEKVVDDGIY+KVKFGIRQEGLIFVPNMQL
Sbjct  361  SDEKFWESYQEFKSNRDAVHEFEVELSLNQIEKVVDDGIYVKVKFGIRQEGLIFVPNMQL  420

Query  421  DIEEEKVKVFIRETSSYYVYHKDDA  445
            D+EE+KVKVFIRETSSYYVYHKD A
Sbjct  421  DMEEDKVKVFIRETSSYYVYHKDAA  445

3) SPP_1196 in NC_012467


> NC_003028_P1|27|G26|15900926|NP_345530.1|Streptococcus_pneumoniae_TIGR4|+|19223..21046|-|SP_1056|Tn5252, 
relaxase
Length=607

 Score =  622 bits (2352),  Expect = 2e-179, Method: Compositional matrix adjust.
 Identities = 354/565 (63%), Positives = 470/565 (84%), Gaps = 4/565 (0%)

Query  1    MVITKHFAIHGKNYRSKLIKYILNPSKTKNLTLVSDFGMRNYLDFPSYEELVKMYNDNFL  60
            MVITKHFAIHGK+YR KLIKYILNP KT+NL+LVSD+GM+N+LDFPSYEE+V+MY++NF+
Sbjct  1    MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI  60

Query  61   SNDTLYEFRHDRREVNQRKIHSHHIIQSFSPDDHLTPEQINQIGYETVKELTGGRFRFIV  120
            SNDTLY+FRHDR E NQRKIH+HHIIQSFSP+DH+TPEQIN+IGYETVKELTGG+FRFIV
Sbjct  61   SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV  120

Query  121  ATHMDKDHIHNHIILNSIDQNSDKKFLWDYKSERNLRMVSDRLSKIAGAKIIENRYSHRQ  180
            ATH+DKDH+HNHII+NS+D NSDKK+ WDYK ERNLRM+SDR+SKIAGAKIIENRYSH++
Sbjct  121  ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQR  180

Query  181  YEVYRKTNYKYEIKQRVYFLIENSKNFEDFKKKAKALHLKIDFRHKHVTFFMTDSNMKQV  240
            YEVYRKTN KYE+KQR+YFL+E+S++FEDFKK+A  LH+ +DFRHKH TFF+TDS MKQV
Sbjct  181  YEVYRKTNHKYELKQRLYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQV  240

Query  241  VRDSKLSRKQPYNETYFKKKFVQREIINILEFLLPKMKNMNELIQRAEFFGLKIIPKEKH  300
            VR+ +L+RKQPY E +FK+ F +REI +++EFLL K+ NM++L+Q+A +FGL I PK+KH
Sbjct  241  VRGKQLNRKQPYTEEFFKNYFAKREIESLMEFLLLKVENMDDLLQKAKLFGLTINPKQKH  300

Query  301  VQFEFDEIKISEQELVKANRYSVSYFQNYFNNKNETVVLDNKNLVELYNEEKLIKEKELP  360
            V F+F  + + E EL + N Y V +FQ+YF+N+++    +  ++V+LY+EEKL KEKELP
Sbjct  301  VSFQFAGVEVKETELDQKNLYDVEFFQDYFKNRKDWQAPETEDFVQLYQEEKLSKEKELP  360

Query  361  TEEVVWKSYQDFKRNRDAVHEFEVELNLNQIEEVVDDGIYIKVQFGIRQEGLIFVPNIQI  420
            ++E  W SYQ+FK NRDAVHEFEVEL+LNQIE VVDDGIY+KV+FGIRQEGLIFVPN+Q+
Sbjct  361  SDEKFWESYQEFKSNRDAVHEFEVELSLNQIEKVVDDGIYVKVKFGIRQEGLIFVPNMQL  420

Query  421  NMEEEKVKVFLRETSSYYVYHKDSTEKNRFMKGKTLIRQFNLQYEPQYMYRRIPLSKIKE  480
            +MEE+KVKVF+RETSSYYVYHKD++EKN +MKG+TLIRQF+ + +   + R+  +  IKE
Sbjct  421  DMEEDKVKVFIRETSSYYVYHKDAAEKNCYMKGRTLIRQFSYENQTIPLRRKATVDMIKE  480

Query  481  KIEQLDFLVSAENSQNAFEDITKDFIAQISYLENMIDHVQNKIDDLSNLEEVLLNDATNS  540
            KI ++D L+  E  ++++  I  +++ +++  E  I+++Q+++  L+++ E LL    + 
Sbjct  481  KIAEVDALIELEVENQSYVTIKDELVHELAASELRINELQERMSTLNQVAEYLLASVESK  540

Query  541  SS---NLEN-SIQGKSSVDTIEKDL  561
                 NL + +I  + S + +EK L
Sbjct  541  QEMKLNLSKLNITENISANIVEKKL  565

4) SP670_1119 in NC_014498


> NC_003028_P1|27|G26|15900926|NP_345530.1|Streptococcus_pneumoniae_TIGR4|+|19223..21046|-|SP_1056|Tn5252, 
relaxase
Length=607

 Score =  617 bits (2333),  Expect = 5e-178, Method: Compositional matrix adjust.
 Identities = 353/524 (68%), Positives = 449/524 (86%), Gaps = 0/524 (0%)

Query  1    MVITKHFAIHGKSYRRKIIKYILNPDKTKNLALVSDYGMRNFLDFPSYDEMVQMYHENFI  60
            MVITKHFAIHGKSYRRK+IKYILNP+KT+NLALVSDYGM+NFLDFPSY+EMVQMYHENFI
Sbjct  1    MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI  60

Query  61   SNDTLYNFRHARLEEKQRKIHAHHIIQSFSPDDHLTPEQINRIGYETAKELTGGRFRFIV  120
            SNDTLY+FRH R+EE+QRKIHAHHIIQSFSP+DH+TPEQINRIGYET KELTGG+FRFIV
Sbjct  61   SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV  120

Query  121  ATHVDKDHIHNHIILNSIDKNSDKKFLWDYKAERNLRMVSDRLSKIVGAKIIENRYSHHQ  180
            ATHVDKDH+HNHII+NS+D NSDKK+ WDYK ERNLRM+SDR+SKI GAKIIENRYSH++
Sbjct  121  ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQR  180

Query  181  YEVYRKTNYKYEIKQRVYFLIENSKNFEDFKKKAKDLHLKIDFRHKHVTFFMTDSNMKQV  240
            YEVYRKTN KYE+KQR+YFL+E+S++FEDFKK+A  LH+ +DFRHKH TFF+TDS MKQV
Sbjct  181  YEVYRKTNHKYELKQRLYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQV  240

Query  241  VRDNKLNRKQPYNETYFKKKFVQREIINILEFLLPKMKNMNELIQQAEFFGLKIILKAKH  300
            VR+++LNRKQPY E +FK+ F +REI +++EFLL K+ NM++L+Q+A +FGL I  K KH
Sbjct  241  VRGKQLNRKQPYTEEFFKNYFAKREIESLMEFLLLKVENMDDLLQKAKLFGLTINPKQKH  300

Query  301  VLFEFDGIKFSEQELVKSNQYSVSYFQDYFNNKNDTFGLDNKNLVELYNEEKLIKEKKLP  360
            V F+F G+   E EL + N Y V +FQDYF+N++D  + +  ++V+LY+EEKL KEK LP
Sbjct  301  VSFQFAGVEVKETELDQKNLYDVEFFQDYFKNRKDWQAPETEDFVQLYQEEKLSKEKELP  360

Query  361  TEDMVWKSYQDFKRNRDAVHEFEVELNLNQIEEVVDDGIYIKVQFGIRQEGLIFVPNIQI  420
            +++  W SYQ+FK NRDAVHEFEVEL+LNQIE VVDDGIY+KV+FGIRQEGLIFVPN+Q+
Sbjct  361  SDEKFWESYQEFKSNRDAVHEFEVELSLNQIEKVVDDGIYVKVKFGIRQEGLIFVPNMQL  420

Query  421  NMEEEKVKVFLRETSSYYVYHKDLAEKNRFMKGKTLIRQFNLQYEQQYMYRRISLSKIKE  480
            +MEE+KVKVF+RETSSYYVYHKD AEKN +MKG+TLIRQF+ + +   + R+ ++  IKE
Sbjct  421  DMEEDKVKVFIRETSSYYVYHKDAAEKNCYMKGRTLIRQFSYENQTIPLRRKATVDMIKE  480

Query  481  KIEQLDFLMSAENSPNDFEDITNDFIAQISYLENMIEQVQNKID  524
            KI ++D L+  E   + +  I ++++ +++  E  I+++Q+++ 
Sbjct  481  KIAEVDALIELEVENQSYVTIKDELVHELAASELRINELQERMS  524

5) SII_0668 in NC_022237


> NC_003028_P1|27|G26|15900926|NP_345530.1|Streptococcus_pneumoniae_TIGR4|+|19223..21046|-|SP_1056|Tn5252, 
relaxase
Length=607

 Score =  615 bits (2323),  Expect = 3e-177, Method: Compositional matrix adjust.
 Identities = 343/524 (66%), Positives = 449/524 (86%), Gaps = 0/524 (0%)

Query  1    MVITKHFAIHGKNYRSKLIKYILNPNKTKNLTLVSDFGMRNYLDFPSYEELVKMYNDNFL  60
            MVITKHFAIHGK+YR KLIKYILNP+KT+NL+LVSD+GM+N+LDFPSYEE+V+MY++NF+
Sbjct  1    MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI  60

Query  61   SNDSLYEFLHDRQEVNQRKIHSHHIIQSFSPDDHLTPEQINRIGYETVKELTGGRFRFIV  120
            SND+LY+F HDR E NQRKIH+HHIIQSFSP+DH+TPEQINRIGYETVKELTGG+FRFIV
Sbjct  61   SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV  120

Query  121  ATHVDKDHMHNHIILNSIDKNSDKKFMWDYKAEHNLRMVSDRLSKIAGAKIIENRYSHHQ  180
            ATHVDKDH+HNHII+NS+D NSDKK+ WDYK E+NLRM+SDR+SKIAGAKIIENRYSH++
Sbjct  121  ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQR  180

Query  181  YEVYRKTNYKYEIKQRVYFLIENSKNFEDFKKKAKALHLKIDFRHKHVTFFMTDSNMKQV  240
            YEVYRKTN KYE+KQR+YFL+E+S++FEDFKK+A  LH+ +DFRHKH TFF+TDS MKQV
Sbjct  181  YEVYRKTNHKYELKQRLYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQV  240

Query  241  VRDSKLSRKQPYNETYFKKKFIQREIINILEFLLPKMKNMNELIQRAEFFGLKIIPKEKH  300
            VR+ +L+RKQPY E +FK+ F +REI +++EFLL K+ NM++L+Q+A +FGL I PK+KH
Sbjct  241  VRGKQLNRKQPYTEEFFKNYFAKREIESLMEFLLLKVENMDDLLQKAKLFGLTINPKQKH  300

Query  301  VQFEFDEIKISEQELVKANRYSVSYFQNYFNNKNESVVLDNKNLVELYNEEKLIKEKEVP  360
            V F+F  + + E EL + N Y V +FQ+YF+N+++    +  ++V+LY+EEKL KEKE+P
Sbjct  301  VSFQFAGVEVKETELDQKNLYDVEFFQDYFKNRKDWQAPETEDFVQLYQEEKLSKEKELP  360

Query  361  TEEVVWKSYQDFKRNRDAVHEFEVELNLNQIEEVVDDGIYIKVQFGIRQEGLIFVPNIQI  420
            ++E  W SYQ+FK NRDAVHEFEVEL+LNQIE VVDDGIY+KV+FGIRQEGLIFVPN+Q+
Sbjct  361  SDEKFWESYQEFKSNRDAVHEFEVELSLNQIEKVVDDGIYVKVKFGIRQEGLIFVPNMQL  420

Query  421  NMEEEKVKVFLRETSSYYVYHKDSAEKNRFMKGKTLIRQFNLQYEPQYMYRRIPLSKIKE  480
            +MEE+KVKVF+RETSSYYVYHKD+AEKN +MKG+TLIRQF+ + +   + R+  +  IKE
Sbjct  421  DMEEDKVKVFIRETSSYYVYHKDAAEKNCYMKGRTLIRQFSYENQTIPLRRKATVDMIKE  480

Query  481  KIEQLDFLISAENSPNDFEDITNDFIAQISYLENMIEQVQNKID  524
            KI ++D LI  E   + +  I ++++ +++  E  I+++Q+++ 
Sbjct  481  KIAEVDALIELEVENQSYVTIKDELVHELAASELRINELQERMS  524

6) SPN23F_12430 in NC_011900


> NC_003028_P1|27|G26|15900926|NP_345530.1|Streptococcus_pneumoniae_TIGR4|+|19223..21046|-|SP_1056|Tn5252, 
relaxase
Length=607

 Score =  608 bits (2296),  Expect = 5e-175, Method: Compositional matrix adjust.
 Identities = 338/524 (65%), Positives = 449/524 (86%), Gaps = 0/524 (0%)

Query  1    MVITKHFAIHGKNYRSKLVKYILNPSKTKNLALVSDFGMRNYLDFPSYKELVKMYNDNFL  60
            MVITKHFAIHGK+YR KL+KYILNP KT+NLALVSD+GM+N+LDFPSY E+V+MY++NF+
Sbjct  1    MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI  60

Query  61   SNDGLYEFRHDRQEVNQRRIYSHHIIQSFSPDDHLTPEQINRIGYETVKELTGGRFRFIV  120
            SND LY+FRHDR E NQR+I +HHIIQSFSP+DH+TPEQINRIGYETVKELTGG+FRFIV
Sbjct  61   SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV  120

Query  121  ATHVDKGHIHNHIILNSIDQNSDKKFLWNYKSERNLRMVSDRLSKIAGAKIIENRYSHRQ  180
            ATHVDK+H+HNHII+NS+D NSDKK+ W+YK ERNLRM+SDR+SKIAGAKIIENRYSH++
Sbjct  121  ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQR  180

Query  181  YEVYRKTNYKYEIKQRVYFLIENSKNFEDFRKKAKALHLIIDFRHKHVTFFMTDSNMKQV  240
            YEVYRKTN KYE+KQR+YFL+E+S++FEDF+K+A  LH+ +DFRHKH TFF+TDS MKQV
Sbjct  181  YEVYRKTNHKYELKQRLYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQV  240

Query  241  VRDDKLNRKQPYNETYFKQKFVQREIINILEFLLPKMKNMNELIQQAEFFDLKIIPKEKH  300
            VR+ +LNRKQPY E +FK+ F +REI +++EFLL K+ NM++L+Q+A +F+L I PK+KH
Sbjct  241  VRGKQLNRKQPYTEEFFKNYFAKREIESLMEFLLLKVENMDDLLQKAKLFGLTINPKQKH  300

Query  301  VLFEFNGIKLSEQELGKMNQYSVSYFQDYFNNKNETFVLDNNNLIELYNKEKLIKEKELP  360
            V F+F G+ + E EL++ N Y V +FQDYF+N+++    + +++++LY+ EKL KEKELP
Sbjct  301  VSFQFAGVEVKETELDQKNLYDVEFFQDYFKNRKDWQAPETEDFVQLYQEEKLSKEKELP  360

Query  361  TEEVVWKSYQDFKRNRDAVHELEVELNLNQIEAVVDDGIYIKVQFGIRQEGLIFVPNIQI  420
            ++E  W SYQ+FK NRDAVHE+EVEL+LNQIE VVDDGIY+KV+FGIRQEGLIFVPN+Q+
Sbjct  361  SDEKFWESYQEFKSNRDAVHEFEVELSLNQIEKVVDDGIYVKVKFGIRQEGLIFVPNMQL  420

Query  421  NMEEEKVKVFLRETSSYYVYHKDSADKNRFMKGKTLIRQFTLQHEPQHMYRRIPLSKIKE  480
            +MEE+KVKVF+RETSSYYVYHKD+A+KN +MKG+TLIRQF+ +++   + R+  +  IKE
Sbjct  421  DMEEDKVKVFIRETSSYYVYHKDAAEKNCYMKGRTLIRQFSYENQTIPLRRKATVDMIKE  480

Query  481  KIEQLDFLISAENSPNDFEDITNDFIAQISYLENMIEQVQNKID  524
            KI ++D LI  E   + +  I ++++ +++  E  I+++Q+++ 
Sbjct  481  KIAEVDALIELEVENQSYVTIKDELVHELAASELRINELQERMS  524

7) SPCG_1276 in NC_010582


> NC_003028_P1|27|G26|15900926|NP_345530.1|Streptococcus_pneumoniae_TIGR4|+|19223..21046|-|SP_1056|Tn5252, 
relaxase
Length=607

 Score =  608 bits (2296),  Expect = 5e-175, Method: Compositional matrix adjust.
 Identities = 338/524 (65%), Positives = 449/524 (86%), Gaps = 0/524 (0%)

Query  1    MVITKHFAIHGKNYRSKLVKYILNPSKTKNLALVSDFGMRNYLDFPSYKELVKMYNDNFL  60
            MVITKHFAIHGK+YR KL+KYILNP KT+NLALVSD+GM+N+LDFPSY E+V+MY++NF+
Sbjct  1    MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI  60

Query  61   SNDGLYEFRHDRQEVNQRRIYSHHIIQSFSPDDHLTPEQINRIGYETVKELTGGRFRFIV  120
            SND LY+FRHDR E NQR+I +HHIIQSFSP+DH+TPEQINRIGYETVKELTGG+FRFIV
Sbjct  61   SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV  120

Query  121  ATHVDKGHIHNHIILNSIDQNSDKKFLWNYKSERNLRMVSDRLSKIAGAKIIENRYSHRQ  180
            ATHVDK+H+HNHII+NS+D NSDKK+ W+YK ERNLRM+SDR+SKIAGAKIIENRYSH++
Sbjct  121  ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQR  180

Query  181  YEVYRKTNYKYEIKQRVYFLIENSKNFEDFRKKAKALHLIIDFRHKHVTFFMTDSNMKQV  240
            YEVYRKTN KYE+KQR+YFL+E+S++FEDF+K+A  LH+ +DFRHKH TFF+TDS MKQV
Sbjct  181  YEVYRKTNHKYELKQRLYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQV  240

Query  241  VRDDKLNRKQPYNETYFKQKFVQREIINILEFLLPKMKNMNELIQQAEFFDLKIIPKEKH  300
            VR+ +LNRKQPY E +FK+ F +REI +++EFLL K+ NM++L+Q+A +F+L I PK+KH
Sbjct  241  VRGKQLNRKQPYTEEFFKNYFAKREIESLMEFLLLKVENMDDLLQKAKLFGLTINPKQKH  300

Query  301  VLFEFNGIKLSEQELGKMNQYSVSYFQDYFNNKNETFVLDNNNLIELYNKEKLIKEKELP  360
            V F+F G+ + E EL++ N Y V +FQDYF+N+++    + +++++LY+ EKL KEKELP
Sbjct  301  VSFQFAGVEVKETELDQKNLYDVEFFQDYFKNRKDWQAPETEDFVQLYQEEKLSKEKELP  360

Query  361  TEEVVWKSYQDFKRNRDAVHELEVELNLNQIEAVVDDGIYIKVQFGIRQEGLIFVPNIQI  420
            ++E  W SYQ+FK NRDAVHE+EVEL+LNQIE VVDDGIY+KV+FGIRQEGLIFVPN+Q+
Sbjct  361  SDEKFWESYQEFKSNRDAVHEFEVELSLNQIEKVVDDGIYVKVKFGIRQEGLIFVPNMQL  420

Query  421  NMEEEKVKVFLRETSSYYVYHKDSADKNRFMKGKTLIRQFTLQHEPQHMYRRIPLSKIKE  480
            +MEE+KVKVF+RETSSYYVYHKD+A+KN +MKG+TLIRQF+ +++   + R+  +  IKE
Sbjct  421  DMEEDKVKVFIRETSSYYVYHKDAAEKNCYMKGRTLIRQFSYENQTIPLRRKATVDMIKE  480

Query  481  KIEQLDFLISAENSPNDFEDITNDFIAQISYLENMIEQVQNKID  524
            KI ++D LI  E   + +  I ++++ +++  E  I+++Q+++ 
Sbjct  481  KIAEVDALIELEVENQSYVTIKDELVHELAASELRINELQERMS  524

8) gbs1338 in NC_004368


> NC_003028_P1|27|G26|15900926|NP_345530.1|Streptococcus_pneumoniae_TIGR4|+|19223..21046|-|SP_1056|Tn5252, 
relaxase
Length=607

 Score =  567 bits (2139),  Expect = 1e-162, Method: Compositional matrix adjust.
 Identities = 333/618 (54%), Positives = 488/618 (79%), Gaps = 13/618 (2%)

Query  1    MVVTKHFATHGEKYRRRLIKYILNPNKTNNLKLVSDFGMSNYLDFPTYEETVEMYQANFL  60
            MV+TKHFA HG  YRR+LIKYILNP+KTNNL LVSD+GM N+LDFP+YEE V+MY+ NF+
Sbjct  1    MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI  60

Query  61   NNDTLYNFRNDRQEKRQQKIHAHHLIQSFSPDDNLSPEEINRIGYETIQELTGGQFRFIV  120
            +NDTLY+FR+DR E  Q+KIHAHH+IQSFSP+D+++PE+INRIGYET++ELTGG+FRFIV
Sbjct  61   SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV  120

Query  121  ATHTDKSHLHNHIVINSIDINSDKKLKWDYAQERNFRMISDRISKIAGAKIIENRYSHRD  180
            ATH DK HLHNHI+INS+D NSDKKLKWDY  ERN+RMISDR+SKIAGAKIIENRYSH+ 
Sbjct  121  ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQR  180

Query  181  YEVYKKSNHKFELKQRLYFLMQQSDSFEDFLKKAERLHVKIDFTRKHSRFMMTDRDMKQV  240
            YEVY+K+NHK+ELKQRLYFLM++S  FEDF K+A  LHV +DF +KH+ F +TD  MKQV
Sbjct  181  YEVYRKTNHKYELKQRLYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQV  240

Query  241  IRGNKLSKRDLYDEEFFRTYFAKQDIEKRLEFLLDTTNSIEELLLKARELNLTIDFKQKN  300
            +RG++L++++ Y EEFF+ YFAK++IE  +EFLL   +++++LL KA+ + LTI+ KQK+
Sbjct  241  VRGKQLNRKQPYTEEFFKNYFAKREIESLMEFLLLKVENMDDLLQKAKLFGLTINPKQKH  300

Query  301  VTFTLEEDGRRIGLNHKKISDKKLYDVQFFQSYFEEEKIITLEEQGNLQEHYRNFKGDQE  360
            V+F +      + +++  + +K+LYDV+FFQ YF + K     E  ++ + Y++ K  +E
Sbjct  301  VSFQFAG----VEVKETELDQKNLYDVEFFQDYFKNRKDWQAPETEDFVQLYQEEKLSKE  356

Query  361  QEKASLDEIESAYEEFKKNRDSVHEFEVELAANQIEKLVDEGIYIKVSFGIKQNGIIFIP  420
            +E +S + +  +Y+EFK NRD+VHEFEVEL+ NQIEK+VD+GIY+KV FGI+Q+G+IF+P
Sbjct  357  KELPSDEKFWESYQEFKSNRDAVHEFEVELSLNQIEKVVDDGIYVKVKFGIRQEGLIFVP  416

Query  421  NYQLDMIEEDDRTKYKVYIRETTSYFVYNKESSDKDRYIKGRTLIRQLTQDSQKLPY-KK  479
            N QLDM E+    K KV+IRET+SY+VY+K++++K+ Y+KGRTLIRQ++ ++Q +P  +K
Sbjct  417  NMQLDMEED----KVKVFIRETSSYYVYHKDAAEKNCYMKGRTLIRQFSYENQTIPLRRK  472

Query  480  PTVASIQQKISEINFLIELNTSDKNYHEMKDEFVTEIAELDIRLHETREKIVTLNKIAEV  539
            +TV  I++KI+E++ LIEL+  +++Y  +KDE+V E+A  ++R++E +E++ TLN++AE 
Sbjct  473  ATVDMIKEKIAEVDALIELEVENQSYVTIKDELVHELAASELRINELQERMSTLNQVAEY  532

Query  540  LVNLTSKDSQSRKLAKYDFAKLNLSETLTLEKVNLDILKFQKQLNKYLDNYEDVVRRLEN  599
            L+       +S++  K +++KLN++E ++ + V+  +  + +QL+   + YE +V RL++
Sbjct  533  LLA----SVESKQEMKLNLSKLNITENISANIVEKKLKSLGNQLELERGRYEKMVVRLDK  588

Query  600  FVEILNKECTEASKVKYQ  617
            F++ LN   + +  + +Q
Sbjct  589  FINRLNTGLSKGDGIDFQ  606

9) SANR_1168 in NC_022239


> NC_003028_P1|27|G26|15900926|NP_345530.1|Streptococcus_pneumoniae_TIGR4|+|19223..21046|-|SP_1056|Tn5252, 
relaxase
Length=607

 Score =  564 bits (2128),  Expect = 8e-162, Method: Compositional matrix adjust.
 Identities = 329/616 (54%), Positives = 492/616 (80%), Gaps = 13/616 (2%)

Query  1    MVITKHFATHGEKYRRRLLKYILNPDKTNNLKLVSDFGMSNYLDFPTYEETVEMYNTNFL  60
            MVITKHFA HG  YRR+L+KYILNP+KTNNL LVSD+GM N+LDFP+YEE V+MY+ NF+
Sbjct  1    MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI  60

Query  61   NNDTLYNFRNDRQEKHQQKIHAHHLIQSFSPDDNLSPEEVNRIGYETIQELTGGQFRFIV  120
            +NDTLY+FR+DR E +Q+KIHAHH+IQSFSP+D+++PE++NRIGYET++ELTGG+FRFIV
Sbjct  61   SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV  120

Query  121  ATHTDKSHLHNHIVINSIDINSDKKFKWDYAQERNFRMISDRISKIAGAKIIENRYSHRD  180
            ATH DK HLHNHI+INS+D NSDKK+KWDY  ERN+RMISDR+SKIAGAKIIENRYSH+ 
Sbjct  121  ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQR  180

Query  181  YEVYKKSNHKFELKQRLYFLMQQSNSFEDFLKKADWLHVKIDFTRKYSRFLMTDRDMKQV  240
            YEVY+K+NHK+ELKQRLYFLM++S  FEDF K+A  LHV +DF +K + F++TD  MKQV
Sbjct  181  YEVYRKTNHKYELKQRLYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQV  240

Query  241  IRGNKLSKRDLYDEEFFRTYFAKQDIEKRLEFLLDKTNSIEELLLKARELNLTIDFKQKN  300
            +RG++L++++ Y EEFF+ YFAK++IE  +EFLL K +++++LL KA+ + LTI+ KQK+
Sbjct  241  VRGKQLNRKQPYTEEFFKNYFAKREIESLMEFLLLKVENMDDLLQKAKLFGLTINPKQKH  300

Query  301  VTFTLEEDRRRISLNHKKISDKKLYDIQFFQSYFEEKNIITPEEQGNLQEHYRNFKEEQE  360
            V+F +      + +++  + +K+LYD++FFQ YF +++   + E  ++ + Y++ K  +E
Sbjct  301  VSFQFAG----VEVKETELDQKNLYDVEFFQDYFKNRKDWQAPETEDFVQLYQEEKLSKE  356

Query  361  QEKVSLDEIESAYEEFKKNRDAVHEFEVELAVNQIEKLVDEGIYIKVSFGIKQNGIIFIP  420
            +E  S + +  +Y+EFK NRDAVHEFEVEL++NQIEK+VD+GIY+KV FGI+Q+G+IF+P
Sbjct  357  KELPSDEKFWESYQEFKSNRDAVHEFEVELSLNQIEKVVDDGIYVKVKFGIRQEGLIFVP  416

Query  421  NYQLDMIEEDDKTKYKVYIRETTSYFVYNKESSDKDRYIKGCTLIRQLTQNSQQLPYRR-  479
            N QLDM  E+DK   KV+IRET+SY+VY+K++++K+ Y+KG TLIRQ++ ++Q +P RR 
Sbjct  417  NMQLDM--EEDKV--KVFIRETSSYYVYHKDAAEKNCYMKGRTLIRQFSYENQTIPLRRK  472

Query  480  ATVASIQQKISEINLLIELNTSDKNYHEMKNEFVREIAELDIRLDETQEKIAILNKMAEV  539
            ATV  I++KI+E++ LIEL+  +++Y  +K+E+V+E+A  ++R++E QE+++ LN++AE 
Sbjct  473  ATVDMIKEKIAEVDALIELEVENQSYVTIKDELVHELAASELRINELQERMSTLNQVAE-  531

Query  540  FINLKSDNQESRKLARYDFAKLNLSESATLEKVNQDMIKLQEQFSHYLNDYEDLIRRLET  599
            ++    ++++  KL   +++KLN++E+ + + V++ +  L +Q+      YE ++ RL+ 
Sbjct  532  YLLASVESKQEMKL---NLSKLNITENISANIVEKKLKSLGNQLELERGRYEKMVVRLDK  588

Query  600  YVEILNQHLGKPEVSE  615
            +++ LN  L+K +  +
Sbjct  589  FINRLNTGLSKGDGID  604

10) SSU98_0919 in NC_009443


> NC_003028_P1|27|G26|15900926|NP_345530.1|Streptococcus_pneumoniae_TIGR4|+|19223..21046|-|SP_1056|Tn5252, 
relaxase
Length=607

 Score =  553 bits (2088),  Expect = 1e-158, Method: Compositional matrix adjust.
 Identities = 320/612 (53%), Positives = 473/612 (78%), Gaps = 12/612 (1%)

Query  1    MVITKHYATHSRKYRKNLIRYILNPEKTAQLKLVSDFGMSNYLDFPSYEEMVKMYQANFL  60
            MVITKH+A H++ YR++LI+YILNPEKT +L LVSD+GM N+LDFPSYEEMV+MY+ NF+
Sbjct  1    MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI  60

Query  61   NNDGLYDSRNDRQEKRQQKIHAHHLIQSFSPDDKLTPEEINRIGYETVKELTGGNFRFIV  120
            +ND LYD R+DR E  Q+KIHAHH+IQSFSP+D +TPE+INRIGYETVKELTGG+FRFIV
Sbjct  61   SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV  120

Query  121  ATHIDQSHIHNHILINSVDLQSDKKLKWNYALERNLRMISDRISKEAGAKIITNRYSHQQ  180
            ATH+D+ H+HNHI+INSVD +SDKKLKW+Y +ERNLRMISDR+SK AGAKII NRYSHQ+
Sbjct  121  ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQR  180

Query  181  YDVYRKTNHKFELKQRLYFLMEQSKDFEDFLKKAEQLHLTIDFSSKHTTFLMTDRDQVKP  240
            Y+VYRKTNHK+ELKQRLYFLME+S+DFEDF K+A  LH+ +DF  KH+TF++TD    + 
Sbjct  181  YEVYRKTNHKYELKQRLYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQV  240

Query  241  IRGRQLNRREPYDESYFRQAFAKGAIEQRLHFLLPRVKTLQELLEMAEELGLFIQLKQKN  300
            +RG+QLNR++PY E +F++ FAK  IE  ++FLL +V  +++LL+ A  +GL I+ KQK+
Sbjct  241  VRGKQLNRKQPYTEEFFKNYFAKREIESLMEFLLLKVENMDDLLQKAKLFGLTINPKQKH  300

Query  301  VTFTLTENDQKISLGHQQVSKKKLYDVSFFQDYFSERSDTDIELSDNIKEDFEIFLAEQT  360
            V+F ++     + + + ++ +K+LYDV FFQDYF +R D +   ++++ + ++     + 
Sbjct  301  VSFQFAG----VEVKETELDQKNLYDVEFFQDYFKNRKDWQAPETEDFVQLYQEEKLSKE  356

Query  361  EKLSTVESIVSDYETFSENRKAVHEFEVELAPHQVDKELRVGIFIKVAFGVKKEGLIFIP  420
              L++ E +   Y+ F  NR AVHEFEVEL+ +Q++K +  GI++KV FG+++EGLIF+P
Sbjct  357  KELPSDEKFWESYQEFKSNRDAVHEFEVELSLNQIEKVVDDGIYVKVKFGIRQEGLIFVP  416

Query  421  NYQLDEIEKEEEQRFKIFLREITSYFIYNKEGSDKNRYMKGRDLIRQLTQDNKSLPYRRR  480
            N QLD     EE++ K+F+RE +SY++Y+K++++KN YMKGR LIRQ++ +N+++P RR+
Sbjct  417  NMQLD----MEEDKVKVFIRETSSYYVYHKDAAEKNCYMKGRTLIRQFSYENQTIPLRRK  472

Query  481  PNLKELQEKIAEVNLLIELNVTNRAYTDIKDELVAEIATYDVSMSELNEKNATLNKMAEV  540
            + +  ++EKIAEV+ LIEL+V N++Y  IKDELV E+A+ ++ ++EL+E+ +TLN++AE 
Sbjct  473  ATVDMIKEKIAEVDALIELEVENQSYVTIKDELVHELAASELRINELQERMSTLNQVAEY  532

Query  541  LVNLKSHDIERRRLARYEFSKLNLTESVTLEQIEREISNTQDQLSKLLDNYEESVRKLET  600
            L+      +E ++  + ++SKLN+TE+++ + +E+ + +  +QL    + YE  V +L+ 
Sbjct  533  LLA----SVESKQEMKLNLSKLNITENISANIVEKKLKSLGNQLELERGRYEKMVVRLDK  588

Query  601  FVAVLNRTAPRT  612
            F+  LN   ++ 
Sbjct  589  FINRLNTGLSKG  600

11) SMA_1385 in NC_016749


> NC_003028_P1|27|G26|15900926|NP_345530.1|Streptococcus_pneumoniae_TIGR4|+|19223..21046|-|SP_1056|Tn5252, 
relaxase
Length=607

 Score =  548 bits (2068),  Expect = 4e-157, Method: Compositional matrix adjust.
 Identities = 321/607 (53%), Positives = 476/607 (79%), Gaps = 13/607 (2%)

Query  1    MVVTKHFATHGKKYRRRLIKYILNPDKTDNLKLVSDFGMSNYLDFPSYEEMVEMYNVNFT  60
            MV+TKHFA HGK YRR+LIKYILNP+KT+NL LVSD+GM N+LDFPSYEEMV+MY+ NF 
Sbjct  1    MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI  60

Query  61   NNDKLYESRNDRQEKHQQNIHAHHLIQSFSPEDNLTPEEINRIGYDTMMELTGGRFKFIV  120
            +ND LY+ R+DR E +Q++IHAHH+IQSFSPED++TPE+INRIGY+T+ ELTGG+F+FIV
Sbjct  61   SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV  120

Query  121  ATHTDKDHVHNHILINAIDRNSDKKLIWNYALERNLRMISDRISKMAGAKIIEKRFSYRD  180
            ATH DKDH+HNHI+IN++D NSDKKL W+Y +ERNLRMISDR+SK+AGAKIIE+R+S + 
Sbjct  121  ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQR  180

Query  181  YQKYRQSSHKFELKQRLYFLMRQSKSFEDFLEKAEQLHVHIDFSQKHSRFMMTDRAMTKP  240
            Y+ YR+++HK+ELKQRLYFLM +S+ FEDF  +A  LHV++DF +KH+ F +TD +M + 
Sbjct  181  YEVYRKTNHKYELKQRLYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQV  240

Query  241  IRGRQLSKRYLYDEEFFRTHFAKQEIESRLEFLLNRVNSLEELLTKAKELNLTIDLKQKN  300
            +RG+QL+++  Y EEFF+  FAK+EIES +EFLL +V+++++LL KAK + LTI+ KQK+
Sbjct  241  VRGKQLNRKQPYTEEFFKNYFAKREIESLMEFLLLKVENMDDLLQKAKLFGLTINPKQKH  300

Query  301  VIFILEESGKQFSLSHKKISDKKLYDVNFFQDYFKNMEVGDSEGLENLQEQYHAFQEERD  360
            V F +        + +  + +K+LYDV+FFQDYFKN    ++   E++ + Y+  +  ++
Sbjct  301  VSFQFAGVE----VKETELDQKNLYDVEFFQDYFKNRKDWQAPETEDFVQLYQEEKLSKE  356

Query  361  KDKVATEEIEEAFEGFKKKRDAVHEFEVELAEHQIEKLVDEGIYIKVSFGIKQSGLVFIP  420
            K+  + E + E+++ FK +RDAVHEFEVEL+ +QIEK+VD+GIY+KV FGI+Q GL+F+P
Sbjct  357  KELPSDEKFWESYQEFKSNRDAVHEFEVELSLNQIEKVVDDGIYVKVKFGIRQEGLIFVP  416

Query  421  NYQLDIIEEDKQKKYKVYIRETTSYFVYNKENSDKNQYIKGRTLIRQLTNDSRMIPYKR-  479
            N QLD+ E+    K KV+IRET+SY+VY+K+ ++KN Y+KGRTLIRQ++ +++ IP +R 
Sbjct  417  NMQLDMEED----KVKVFIRETSSYYVYHKDAAEKNCYMKGRTLIRQFSYENQTIPLRRK  472

Query  480  PTVESLQKKISEINLLIELTETDKKYQDIKDELVAEIAELDIKLTQTNEKIATLNKMAEV  539
            +TV+ ++ KI+E++ LIEL   ++ Y  IKDELV E+A  ++++ + +E+++TLN++AE 
Sbjct  473  ATVDMIKEKIAEVDALIELEVENQSYVTIKDELVHELAASELRINELQERMSTLNQVAEY  532

Query  540  FINLKGAELSSQKLARYDFSKLNLTESISLEQVNEEIGVLQEELGHYLDEYEGLARRLER  599
            ++    A + S++  + ++SKLN+TE+IS + V+  +  L ++L    + YE +  RL++
Sbjct  533  LL----ASVESKQEMKLNLSKLNITENISANIVEKKLKSLGNQLELERGRYEKMVVRLDK  588

Query  600  FVKVLNA  606
            F++ LN+
Sbjct  589  FINRLNT  595

12) SSUBM407_0993 in NC_012926


> NC_003028_P1|27|G26|15900926|NP_345530.1|Streptococcus_pneumoniae_TIGR4|+|19223..21046|-|SP_1056|Tn5252, 
relaxase
Length=607

 Score =  543 bits (2049),  Expect = 2e-155, Method: Compositional matrix adjust.
 Identities = 320/612 (53%), Positives = 474/612 (78%), Gaps = 12/612 (1%)

Query  1    MVITKHYATHSRKYRKNLIRYILNPEKTAQLKLVSDFGMSNYLDFPSYEEMVKMYQANFL  60
            MVITKH+A H++ YR++LI+YILNPEKT +L LVSD+GM N+LDFPSYEEMV+MY+ NF+
Sbjct  1    MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI  60

Query  61   NNDGLYDSRNDRQEKRQQKIHAHHLIQSFSPDDKLTPEEINRIGYETVKELTGGNFRFIV  120
            +ND LYD R+DR E  Q+KIHAHH+IQSFSP+D +TPE+INRIGYETVKELTGG+FRFIV
Sbjct  61   SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV  120

Query  121  ATHIDQSHIHNHILINSVDLQSDKKLKWNYALERNLRMISDRISKEAGAKIITNRYSHQQ  180
            ATH+D+ H+HNHI+INSVD +SDKKLKW+Y +ERNLRMISDR+SK AGAKII NRYSHQ+
Sbjct  121  ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQR  180

Query  181  YDVYRKTNHKFELKQRLYFLMEQSKDFEDFLKKAEQLHLTIDFSSKHTTFLMTDRDQVKP  240
            Y+VYRKTNHK+ELKQRLYFLME+S+DFEDF K+A  LH+ +DF  KH+TF++TD    + 
Sbjct  181  YEVYRKTNHKYELKQRLYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQV  240

Query  241  IRGRQLNRREPYDESYFRQAFAKGAIEQRLHFLLPRVKTLQELLEMAEELGLFIQLKQKN  300
            +RG+QLNR++PY E +F++ FAK  IE  ++FLL +V  +++LL+ A  +GL I+ KQK+
Sbjct  241  VRGKQLNRKQPYTEEFFKNYFAKREIESLMEFLLLKVENMDDLLQKAKLFGLTINPKQKH  300

Query  301  VTFTLTENDQKISLGHQQVSKKKLYDVSFFQDYFSERSDTDIELSDNIKEDFEIFLAEQA  360
            V+F ++     + + + ++ +K+LYDV FFQDYF +R D +   ++++ + ++     + 
Sbjct  301  VSFQFAG----VEVKETELDQKNLYDVEFFQDYFKNRKDWQAPETEDFVQLYQEEKLSKE  356

Query  361  EKLSTVESIVSDYETFSENRKAVHEFEVELAPHQVDKEVEGGIFIKVAFGVKKEGLIFIP  420
              L++ E +   Y+ F  NR AVHEFEVEL+ +Q++K V++GI++KV FG+++EGLIF+P
Sbjct  357  KELPSDEKFWESYQEFKSNRDAVHEFEVELSLNQIEKVVDDGIYVKVKFGIRQEGLIFVP  416

Query  421  NYQLDeiekeeekrfkiflreITSYFIYNKESSDKNRYMKGRDLIRQLTQDNKSLPYRRR  480
            N QLD     EE + K+F+RE +SY++Y+K++++KN YMKGR LIRQ++ +N+++P RR+
Sbjct  417  NMQLD----MEEDKVKVFIRETSSYYVYHKDAAEKNCYMKGRTLIRQFSYENQTIPLRRK  472

Query  481  PNLKELQEKITEVNLLIELNVTNRAYTDIKDELVAEIATYDVSMSELNEKTATLNKIAEV  540
            + +  ++EKI+EV+ LIEL+V N++Y  IKDELV E+A+ ++ ++EL+E+ +TLN++AE 
Sbjct  473  ATVDMIKEKIAEVDALIELEVENQSYVTIKDELVHELAASELRINELQERMSTLNQVAEY  532

Query  541  LVNLKSHDIERRRLARYEFSKLNLTESVTLEQIEREISNTQDQLSKLLDNYEESVRKLET  600
            L+      +E ++  + ++SKLN+TE+++ + +E+ + +  +QL    + YE  V +L+ 
Sbjct  533  LLA----SVESKQEMKLNLSKLNITENISANIVEKKLKSLGNQLELERGRYEKMVVRLDK  588

Query  601  FVAVLNRTAPRT  612
            F+  LN   ++ 
Sbjct  589  FINRLNTGLSKG  600

13) SSU05_0913 in NC_009442


> NC_003028_P1|27|G26|15900926|NP_345530.1|Streptococcus_pneumoniae_TIGR4|+|19223..21046|-|SP_1056|Tn5252, 
relaxase
Length=607

 Score =  541 bits (2041),  Expect = 6e-155, Method: Compositional matrix adjust.
 Identities = 321/612 (53%), Positives = 474/612 (78%), Gaps = 12/612 (1%)

Query  1    MVITKHYATHSRKYRKNLIRYILNPEKTAQLKLVSDFGMSNYLDFPSYEEMVKMYQANFL  60
            MVITKH+A H++ YR++LI+YILNPEKT +L LVSD+GM N+LDFPSYEEMV+MY+ NF+
Sbjct  1    MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI  60

Query  61   NNDGLYDSRNDRQEKRQQKIHAHHLIQSFSPDDKLTPEEINRIGYETVKELTGGNFRFIV  120
            +ND LYD R+DR E  Q+KIHAHH+IQSFSP+D +TPE+INRIGYETVKELTGG+FRFIV
Sbjct  61   SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV  120

Query  121  ATHIDQSHIHNHILINSVDLQSDKKLKWNYALERNLRMISDRISKEAGAKIITNRYSHQQ  180
            ATH+D+ H+HNHI+INSVD +SDKKLKW+Y +ERNLRMISDR+SK AGAKII NRYSHQ+
Sbjct  121  ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQR  180

Query  181  YDVYRKTNHKFELKQRLYFLMEQSKDFEDFLKKAEQLHLTIDFSSKHTTFLMTDRDQVKP  240
            Y+VYRKTNHK+ELKQRLYFLME+S+DFEDF K+A  LH+ +DF  KH+TF++TD    + 
Sbjct  181  YEVYRKTNHKYELKQRLYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQV  240

Query  241  IRGRQLNRREPYDESYFRQAFAKGAIEQRLHFLLPRVKTLQELLEMAEELGLFIQLKQKN  300
            +RG+QLNR++PY E +F++ FAK  IE  ++FLL +V  +++LL+ A  +GL I+ KQK+
Sbjct  241  VRGKQLNRKQPYTEEFFKNYFAKREIESLMEFLLLKVENMDDLLQKAKLFGLTINPKQKH  300

Query  301  VTFTLTENDQKISLGHQQVSKKKLYDVSFFQDYFSERSDTDIELSDNIKEDFEIFLAEQT  360
            V+F ++     + + + ++ +K+LYDV FFQDYF +R D +   ++++ + ++     + 
Sbjct  301  VSFQFAG----VEVKETELDQKNLYDVEFFQDYFKNRKDWQAPETEDFVQLYQEEKLSKE  356

Query  361  EKLSTVESIVSDYETFSENRKAVHEFEVELAPHQVDKEVEGGIFIKVAFGVKKEGLIFIP  420
              L++ E +   Y+ F  NR AVHEFEVEL+ +Q++K V++GI++KV FG+++EGLIF+P
Sbjct  357  KELPSDEKFWESYQEFKSNRDAVHEFEVELSLNQIEKVVDDGIYVKVKFGIRQEGLIFVP  416

Query  421  NYQLDeiekeeekrfkiflreITSYFIYNKEGSDKNRYMKGRDLIRQLTQDNKSLPYRRR  480
            N QLD     EE + K+F+RE +SY++Y+K++++KN YMKGR LIRQ++ +N+++P RR+
Sbjct  417  NMQLD----MEEDKVKVFIRETSSYYVYHKDAAEKNCYMKGRTLIRQFSYENQTIPLRRK  472

Query  481  PNLKELQEKIAEVNLLIELNVTNRAYTDIKDELVAEIATYDVSMSELNEKNATLNKMAEV  540
            + +  ++EKIAEV+ LIEL+V N++Y  IKDELV E+A+ ++ ++EL+E+ +TLN++AE 
Sbjct  473  ATVDMIKEKIAEVDALIELEVENQSYVTIKDELVHELAASELRINELQERMSTLNQVAEY  532

Query  541  LVNLKSHDIERRRLARYEFSKLNLTESVTLEQIEREISNTQDQLSKLLDNYEESVRKLET  600
            L+      +E ++  + ++SKLN+TE+++ + +E+ + +  +QL    + YE  V +L+ 
Sbjct  533  LLA----SVESKQEMKLNLSKLNITENISANIVEKKLKSLGNQLELERGRYEKMVVRLDK  588

Query  601  FVAVLNRTAPRT  612
            F+  LN   ++ 
Sbjct  589  FINRLNTGLSKG  600

14) SSUSC84_0819 in NC_012924


> NC_003028_P1|27|G26|15900926|NP_345530.1|Streptococcus_pneumoniae_TIGR4|+|19223..21046|-|SP_1056|Tn5252, 
relaxase
Length=607

 Score =  541 bits (2041),  Expect = 6e-155, Method: Compositional matrix adjust.
 Identities = 321/612 (53%), Positives = 474/612 (78%), Gaps = 12/612 (1%)

Query  1    MVITKHYATHSRKYRKNLIRYILNPEKTAQLKLVSDFGMSNYLDFPSYEEMVKMYQANFL  60
            MVITKH+A H++ YR++LI+YILNPEKT +L LVSD+GM N+LDFPSYEEMV+MY+ NF+
Sbjct  1    MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI  60

Query  61   NNDGLYDSRNDRQEKRQQKIHAHHLIQSFSPDDKLTPEEINRIGYETVKELTGGNFRFIV  120
            +ND LYD R+DR E  Q+KIHAHH+IQSFSP+D +TPE+INRIGYETVKELTGG+FRFIV
Sbjct  61   SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV  120

Query  121  ATHIDQSHIHNHILINSVDLQSDKKLKWNYALERNLRMISDRISKEAGAKIITNRYSHQQ  180
            ATH+D+ H+HNHI+INSVD +SDKKLKW+Y +ERNLRMISDR+SK AGAKII NRYSHQ+
Sbjct  121  ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQR  180

Query  181  YDVYRKTNHKFELKQRLYFLMEQSKDFEDFLKKAEQLHLTIDFSSKHTTFLMTDRDQVKP  240
            Y+VYRKTNHK+ELKQRLYFLME+S+DFEDF K+A  LH+ +DF  KH+TF++TD    + 
Sbjct  181  YEVYRKTNHKYELKQRLYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQV  240

Query  241  IRGRQLNRREPYDESYFRQAFAKGAIEQRLHFLLPRVKTLQELLEMAEELGLFIQLKQKN  300
            +RG+QLNR++PY E +F++ FAK  IE  ++FLL +V  +++LL+ A  +GL I+ KQK+
Sbjct  241  VRGKQLNRKQPYTEEFFKNYFAKREIESLMEFLLLKVENMDDLLQKAKLFGLTINPKQKH  300

Query  301  VTFTLTENDQKISLGHQQVSKKKLYDVSFFQDYFSERSDTDIELSDNIKEDFEIFLAEQT  360
            V+F ++     + + + ++ +K+LYDV FFQDYF +R D +   ++++ + ++     + 
Sbjct  301  VSFQFAG----VEVKETELDQKNLYDVEFFQDYFKNRKDWQAPETEDFVQLYQEEKLSKE  356

Query  361  EKLSTVESIVSDYETFSENRKAVHEFEVELAPHQVDKEVEGGIFIKVAFGVKKEGLIFIP  420
              L++ E +   Y+ F  NR AVHEFEVEL+ +Q++K V++GI++KV FG+++EGLIF+P
Sbjct  357  KELPSDEKFWESYQEFKSNRDAVHEFEVELSLNQIEKVVDDGIYVKVKFGIRQEGLIFVP  416

Query  421  NYQLDeiekeeekrfkiflreITSYFIYNKEGSDKNRYMKGRDLIRQLTQDNKSLPYRRR  480
            N QLD     EE + K+F+RE +SY++Y+K++++KN YMKGR LIRQ++ +N+++P RR+
Sbjct  417  NMQLD----MEEDKVKVFIRETSSYYVYHKDAAEKNCYMKGRTLIRQFSYENQTIPLRRK  472

Query  481  PNLKELQEKIAEVNLLIELNVTNRAYTDIKDELVAEIATYDVSMSELNEKNATLNKMAEV  540
            + +  ++EKIAEV+ LIEL+V N++Y  IKDELV E+A+ ++ ++EL+E+ +TLN++AE 
Sbjct  473  ATVDMIKEKIAEVDALIELEVENQSYVTIKDELVHELAASELRINELQERMSTLNQVAEY  532

Query  541  LVNLKSHDIERRRLARYEFSKLNLTESVTLEQIEREISNTQDQLSKLLDNYEESVRKLET  600
            L+      +E ++  + ++SKLN+TE+++ + +E+ + +  +QL    + YE  V +L+ 
Sbjct  533  LLA----SVESKQEMKLNLSKLNITENISANIVEKKLKSLGNQLELERGRYEKMVVRLDK  588

Query  601  FVAVLNRTAPRT  612
            F+  LN   ++ 
Sbjct  589  FINRLNTGLSKG  600

15) SSUJS14_0617 in NC_017618


> NC_003028_P1|27|G26|15900926|NP_345530.1|Streptococcus_pneumoniae_TIGR4|+|19223..21046|-|SP_1056|Tn5252, 
relaxase
Length=607

 Score =  541 bits (2042),  Expect = 6e-155, Method: Compositional matrix adjust.
 Identities = 313/619 (51%), Positives = 472/619 (77%), Gaps = 13/619 (2%)

Query  1    MVVTKHFAVHGNKYRKSLIKYILNPAKTDQLKLVSDFGMSNYLDFPNYEEIVEMYQANFV  60
            MV+TKHFA+HG+ YR+ LIKYILNP KT++L LVSD+GM N+LDFP+YEE+V+MY+ NF+
Sbjct  1    MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI  60

Query  61   NNDRLYDSRNDRQQIKQNKIHAHHLIQSFSPEDNLTPEEINRIGYETIKELTGGNFRFIV  120
            +ND LYD R+DR + +Q KIHAHH+IQSFSPED++TPE+INRIGYET+KELTGG+FRFIV
Sbjct  61   SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV  120

Query  121  TTHTDRLHVHNHILINSVDLNSHKKLKWDYAQERNLRMISDRLSKEAGAKIITPNRYSHE  180
            +TH D+ H+HNHI+INSVD NS+KKLKWDY  ERNLRMISDR+SK AGAKII  NRYSH+
Sbjct  121  ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKII-ENRYSHQ  179

Query  181  KFVTYRKSNHKFELKQRLYFLMENSKDFDDFLSKAEALNVQIDFSRKYARFLMTDMPMKR  240
            ++  YRK+NHK+ELKQRLYFLME+S+DF+DF  +A  L+V++DF +K A F++TD  MK+
Sbjct  180  RYEVYRKTNHKYELKQRLYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQ  239

Query  241  VIRGKQLDKRQPYTEEYFREHFAKRAIEQCLDFLLPRVRDLSQLLEFAREPNLAMSLKQK  300
            V+RGKQL+++QPYTEE+F++ FAKR IE  ++FLL +V ++ +LL+ A+   L+++ KQK
Sbjct  240  VVRGKQLNRKQPYTEEFFKNYFAKREIESLMEFLLLKVENMDDLLQKAKLFGLTINPKQK  299

Query  301  NVAFTLTKNSQSITVNNQKVSSKNLYDVQFFETYFEKRGEVPDIDQSQLISDFEGYCEEQ  360
            +V+F ++    ++ V++  +  KNLYDV+FF+ YF +R +    +  +++  ++     +
Sbjct  300  HVSFQFA----GVEVKETELDQKNLYDVEFFQDYFKNRKDWQAPETEDFVQLYQEEKLSK  355

Query  361  DKEKLAYEDLQEAYQAFKEKRDQVQEFDVVLADHQIDKLVKDGLFIRMNYGVKKDGLVFI  420
            +KE  + E + E+YQ FK +RD V+EF+V L+ +QI+K+V DG+++++++G++++GL+F+
Sbjct  356  EKELPSDEKFWESYQEFKSNRDAVHEFEVELSLNQIEKVVDDGIYVKVKFGIRQEGLIFV  415

Query  421  PNRHLDIKETESGKHYHAFIRETAQFFIYNKEASELNRYMRGRELIRQLTNDSQTISKRK  480
            PN +LD+ E         FIRET+ +++Y+K+A+E N YM+GR LIRQ++ ++QTI+ R+
Sbjct  416  PNMQLDMEEDKV----KVFIRETSSYYVYHKDAAEKNCYMKGRTLIRQFSYENQTIPLRR  471

Query  481  RPTIDTLKKKIEEINLLIELGTENKSYQDIKDEIIKDIAQLDLTITEIQEHIDHLNKVAE  540
            ++T+D +K KI E++ LIEL  EN+SY  IKDE++ ++A  +L I E+QE++  LN+VAE
Sbjct  472  KATVDMIKEKIAEVDALIELEVENQSYVTIKDELVHELAASELRINELQERMSTLNQVAE  531

Query  541  VLLNLDNNDIENRRLAKYDYAKMNLTAAIKLEQVEKEIEIYQIKLDKSIDDYEYLIRRLE  600
             LL      +E+++  K + +K+N+T  I  + VEK +     +L+   + YE ++ RL+
Sbjct  532  YLL----ASVESKQEMKLNLSKLNITENISANIVEKKLKSLGNQLELERGRYEKMVVRLD  587

Query  601  KFVKILNEIDSSKDELKFE  619
            KF++ LN   S  D + F+
Sbjct  588  KFINRLNTGLSKGDGIDFQ  606

16) NJAUSS_0605 in NC_020526


> NC_003028_P1|27|G26|15900926|NP_345530.1|Streptococcus_pneumoniae_TIGR4|+|19223..21046|-|SP_1056|Tn5252, 
relaxase
Length=607

 Score =  541 bits (2042),  Expect = 6e-155, Method: Compositional matrix adjust.
 Identities = 313/619 (51%), Positives = 472/619 (77%), Gaps = 13/619 (2%)

Query  1    MVVTKHFAVHGNKYRKSLIKYILNPAKTDQLKLVSDFGMSNYLDFPNYEEIVEMYQANFV  60
            MV+TKHFA+HG+ YR+ LIKYILNP KT++L LVSD+GM N+LDFP+YEE+V+MY+ NF+
Sbjct  1    MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI  60

Query  61   NNDRLYDSRNDRQQIKQNKIHAHHLIQSFSPEDNLTPEEINRIGYETIKELTGGNFRFIV  120
            +ND LYD R+DR + +Q KIHAHH+IQSFSPED++TPE+INRIGYET+KELTGG+FRFIV
Sbjct  61   SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV  120

Query  121  TTHTDRLHVHNHILINSVDLNSHKKLKWDYAQERNLRMISDRLSKEAGAKIITPNRYSHE  180
            +TH D+ H+HNHI+INSVD NS+KKLKWDY  ERNLRMISDR+SK AGAKII  NRYSH+
Sbjct  121  ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKII-ENRYSHQ  179

Query  181  KFVTYRKSNHKFELKQRLYFLMENSKDFDDFLSKAEALNVQIDFSRKYARFLMTDMPMKR  240
            ++  YRK+NHK+ELKQRLYFLME+S+DF+DF  +A  L+V++DF +K A F++TD  MK+
Sbjct  180  RYEVYRKTNHKYELKQRLYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQ  239

Query  241  VIRGKQLDKRQPYTEEYFREHFAKRAIEQCLDFLLPRVRDLSQLLEFAREPNLAMSLKQK  300
            V+RGKQL+++QPYTEE+F++ FAKR IE  ++FLL +V ++ +LL+ A+   L+++ KQK
Sbjct  240  VVRGKQLNRKQPYTEEFFKNYFAKREIESLMEFLLLKVENMDDLLQKAKLFGLTINPKQK  299

Query  301  NVAFTLTKNSQSITVNNQKVSSKNLYDVQFFETYFEKRGEVPDIDQSQLISDFEGYCEEQ  360
            +V+F ++    ++ V++  +  KNLYDV+FF+ YF +R +    +  +++  ++     +
Sbjct  300  HVSFQFA----GVEVKETELDQKNLYDVEFFQDYFKNRKDWQAPETEDFVQLYQEEKLSK  355

Query  361  DKEKLAYEDLQEAYQAFKEKRDQVQEFDVVLADHQIDKLVKDGLFIRMNYGVKKDGLVFI  420
            +KE  + E + E+YQ FK +RD V+EF+V L+ +QI+K+V DG+++++++G++++GL+F+
Sbjct  356  EKELPSDEKFWESYQEFKSNRDAVHEFEVELSLNQIEKVVDDGIYVKVKFGIRQEGLIFV  415

Query  421  PNRHLDIKETESGKHYHAFIRETAQFFIYNKEASELNRYMRGRELIRQLTNDSQTISKRK  480
            PN +LD+ E         FIRET+ +++Y+K+A+E N YM+GR LIRQ++ ++QTI+ R+
Sbjct  416  PNMQLDMEEDKV----KVFIRETSSYYVYHKDAAEKNCYMKGRTLIRQFSYENQTIPLRR  471

Query  481  RPTIDTLKKKIEEINLLIELGTENKSYQDIKDEIIKDIAQLDLTITEIQEHIDHLNKVAE  540
            ++T+D +K KI E++ LIEL  EN+SY  IKDE++ ++A  +L I E+QE++  LN+VAE
Sbjct  472  KATVDMIKEKIAEVDALIELEVENQSYVTIKDELVHELAASELRINELQERMSTLNQVAE  531

Query  541  VLLNLDNNDIENRRLAKYDYAKMNLTAAIKLEQVEKEIEIYQIKLDKSIDDYEYLIRRLE  600
             LL      +E+++  K + +K+N+T  I  + VEK +     +L+   + YE ++ RL+
Sbjct  532  YLL----ASVESKQEMKLNLSKLNITENISANIVEKKLKSLGNQLELERGRYEKMVVRLD  587

Query  601  KFVKILNEIDSSKDELKFE  619
            KF++ LN   S  D + F+
Sbjct  588  KFINRLNTGLSKGDGIDFQ  606

17) SGPB_1112 in NC_015600


> NC_003028_P1|27|G26|15900926|NP_345530.1|Streptococcus_pneumoniae_TIGR4|+|19223..21046|-|SP_1056|Tn5252, 
relaxase
Length=607

 Score =  539 bits (2036),  Expect = 1e-154, Method: Compositional matrix adjust.
 Identities = 311/619 (51%), Positives = 472/619 (77%), Gaps = 13/619 (2%)

Query  1    MVVTKHFAVHGNKYRKSLIKYILNPAKTDQLKLVSDFGMSNYLDFPNYEEIVEMYQANLV  60
            MV+TKHFA+HG+ YR+ LIKYILNP KT++L LVSD+GM N+LDFP+YEE+V+MY+ N++
Sbjct  1    MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI  60

Query  61   NNDRLYDSRNDRQQIKQNKIHAHHLIQSFSPEDNLTPEEINRIGYETIKELTGGNFRFIV  120
            +ND LYD R+DR + +Q KIHAHH+IQSFSPED++TPE+INRIGYET+KELTGG+FRFIV
Sbjct  61   SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV  120

Query  121  TTHTDRSHVHNHILINSVDLNSHKKLKWDYAQERNLRMISDRLSKEAGAKIITPNRYSHE  180
            +TH D+ H+HNHI+INSVD NS+KKLKWDY  ERNLRMISDR+SK AGAKII  NRYSH+
Sbjct  121  ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKII-ENRYSHQ  179

Query  181  KFVTYRKSNHKFELKQRLYFLMENSKDLDDFLSKAEALNVQIDFSRKYARFLMTDMPMKR  240
            ++  YRK+NHK+ELKQRLYFLME+S+D++DF  +A  L+V++DF +K A F++TD  MK+
Sbjct  180  RYEVYRKTNHKYELKQRLYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQ  239

Query  241  VIRGKQLDKRQPYTEEYFREHFAKRAIEQCLDFLLPRVRDLSQLLEFARELNLAMSLKQK  300
            V+RGKQL+++QPYTEE+F++ FAKR IE  ++FLL +V ++ +LL+ A+ + L+++ KQK
Sbjct  240  VVRGKQLNRKQPYTEEFFKNYFAKREIESLMEFLLLKVENMDDLLQKAKLFGLTINPKQK  299

Query  301  NVAFTLTKNSQSITVNNQKVSSKNLYDVQFFETYFEKRGEVPDIDQSQLISDFEGYCEEQ  360
            +V+F ++    ++ V++  +  KNLYDV+FF+ YF +R +    +  +++  ++     +
Sbjct  300  HVSFQFA----GVEVKETELDQKNLYDVEFFQDYFKNRKDWQAPETEDFVQLYQEEKLSK  355

Query  361  DKEKLAYEDLQEAYQAFKEKRDQAQEFEVVLADHQIDKLVKDGLFIRMNYGVKKDGLVFI  420
            +KE  + E + E+YQ FK +RD  +EFEV L+ +QI+K+V DG+++++++G++++GL+F+
Sbjct  356  EKELPSDEKFWESYQEFKSNRDAVHEFEVELSLNQIEKVVDDGIYVKVKFGIRQEGLIFV  415

Query  421  PNRHLDIKETESGKHYHAFIRETAQFFIYNKEASELNRYMRGRELIRQLTNDSQTISKRK  480
            PN +LD+ E         FIRET+ +++Y+K+A+E N YM+GR LIRQ++ ++QTI+ R+
Sbjct  416  PNMQLDMEEDKV----KVFIRETSSYYVYHKDAAEKNCYMKGRTLIRQFSYENQTIPLRR  471

Query  481  RPTIDTLKKKIEEINLLIELGTENKSYQDIKDEIIKDIAQLDLTITEIQEHIDHLNKVAE  540
            ++T+D +K KI E++ LIEL  EN+SY  IKDE++ ++A  +L I E+QE++  LN+VAE
Sbjct  472  KATVDMIKEKIAEVDALIELEVENQSYVTIKDELVHELAASELRINELQERMSTLNQVAE  531

Query  541  VLLNLDNNDIENRRLAKYDYAKMNLTAAIKLEQVEKEIEIYQIKLDKSIDDYEYLIRRLE  600
             LL      +E+++  K + +K+N+T  I  + VEK +     +L+   + YE ++ RL+
Sbjct  532  YLL----ASVESKQEMKLNLSKLNITENISANIVEKKLKSLGNQLELERGRYEKMVVRLD  587

Query  601  KFVKILNEIDSSKDELKFE  619
            KF++ LN   S  D + F+
Sbjct  588  KFINRLNTGLSKGDGIDFQ  606

18) SSUBM407_0508 in NC_012926


> NC_003028_P1|27|G26|15900926|NP_345530.1|Streptococcus_pneumoniae_TIGR4|+|19223..21046|-|SP_1056|Tn5252, 
relaxase
Length=607

 Score =  532 bits (2006),  Expect = 4e-152, Method: Compositional matrix adjust.
 Identities = 321/608 (53%), Positives = 479/608 (79%), Gaps = 13/608 (2%)

Query  1    MVVTKHFATHGKKYRRRLIKYILNPDKTDNLKLVSDFGMSNYLDFPSYEEMVEMYNVNFT  60
            MV+TKHFA HGK YRR+LIKYILNP+KT+NL LVSD+GM N+LDFPSYEEMV+MY+ NF 
Sbjct  1    MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI  60

Query  61   NNDKLYESRNDRQEKHQQNIHSHHLIQSFSPEDNLTPEEINRIGYDTMMELTGGRFKFIV  120
            +ND LY+ R+DR E +Q++IH+HH+IQSFSPED++TPE+INRIGY+T+ ELTGG+F+FIV
Sbjct  61   SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV  120

Query  121  ATHTDKDHVHNHILINAIDSNSDKKLIWNYALERNLRMISDRISKIAGAKIIEKRFSYRD  180
            ATH DKDH+HNHI+IN++DSNSDKKL W+Y +ERNLRMISDR+SKIAGAKIIE+R+S + 
Sbjct  121  ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQR  180

Query  181  YQKYRQSSHKFELKQRLYFLMQHSKSFDDFLEKAVQLHVHIDFSQKHSRFMMRDRAMTKP  240
            Y+ YR+++HK+ELKQRLYFLM+HS+ F+DF  +A  LHV++DF +KH+ F + D +M + 
Sbjct  181  YEVYRKTNHKYELKQRLYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQV  240

Query  241  IRGRQLSKRDLYDEEFFRTHFAKHEIESRLEFLLNRVNFLEELLTKAKELNLTIDLKQKN  300
            +RG+QL++++ Y EEFF+  FAK+EIES +EFLL +V+ +++LL KAK + LTI+ KQK+
Sbjct  241  VRGKQLNRKQPYTEEFFKNYFAKREIESLMEFLLLKVENMDDLLQKAKLFGLTINPKQKH  300

Query  301  VIFILEENGKQFSLSHKKISDKKLYDVNFFQDYFKNKEVGDSEGLENLQEQYHAFQEERD  360
            V F +        + +  + +K+LYDV+FFQDYFKN+   ++   E++ + Y+  +  ++
Sbjct  301  VSFQFAGVE----VKETELDQKNLYDVEFFQDYFKNRKDWQAPETEDFVQLYQEEKLSKE  356

Query  361  kekvateeieeafeefkkkRDAVHEFEVELAGHQIEKLVDEGVYIKVSFGVKQSGFIFIP  420
            KE  + E + E+++EFK +RDAVHEFEVEL+ +QIEK+VD+G+Y+KV FG++Q G+IF+P
Sbjct  357  KELPSDEKFWESYQEFKSNRDAVHEFEVELSLNQIEKVVDDGIYVKVKFGIRQEGLIFVP  416

Query  421  NYQLDIIEEDNQKKYKVYIRETTSYFVYNKEHSDKNQYIKGRTLIRQLTNDSRAIPYRR-  479
            N QLD+ E+    K KV+IRET+SY+VY+K+ ++KN Y+KGRTLIRQ++ ++++IP RR 
Sbjct  417  NMQLDMEED----KVKVFIRETSSYYVYHKDAAEKNCYMKGRTLIRQFSYENQTIPLRRK  472

Query  480  PTVERLQEKITEINLLIELTETDKRYQYVKDELVAEIAELDVKLNQTNEKIAILNKMAEV  539
            +TV+ ++EKI+E++ LIEL   ++ Y  +KDELV E+A  ++++N+ +E+++ LN++AE 
Sbjct  473  ATVDMIKEKIAEVDALIELEVENQSYVTIKDELVHELAASELRINELQERMSTLNQVAEY  532

Query  540  LINLKSDDPNSRKLARYDFSKLNLTESITLEQVTEEIRVLQEDLGHYLDEYEGLARKLET  599
            L+       +S++  + ++SKLN+TE+I+ + V   ++ L ++L    + YE +  +L+ 
Sbjct  533  LLA----SVESKQEMKLNLSKLNITENISANIVEKKLKSLGNQLELERGRYEKMVVRLDK  588

Query  600  FVKILNTN  607
            F++ LNT 
Sbjct  589  FINRLNTG  596

19) STH8232_0691 in NC_017581


> NC_003028_P1|27|G26|15900926|NP_345530.1|Streptococcus_pneumoniae_TIGR4|+|19223..21046|-|SP_1056|Tn5252, 
relaxase
Length=607

 Score =  530 bits (1999),  Expect = 1e-151, Method: Compositional matrix adjust.
 Identities = 320/581 (56%), Positives = 467/581 (81%), Gaps = 15/581 (2%)

Query  1    MVVTKHFATHGKKYRRRLIKYILNPDKTDNLKLVSDFGMSNYLDFPSYEEMVEMYNVNFT  60
            MV+TKHFA HGK YRR+LIKYILNP+KT+NL LVSD+GM N+LDFPSYEEMV+MY+ NF 
Sbjct  1    MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI  60

Query  61   NNDKLYESRNDRQEKHQQNIHAHHLIQSFSPEDNLTPEEINRIGYETMMELTGGHFRFIV  120
            +ND LY+ R+DR E +Q++IHAHH+IQSFSPED++TPE+INRIGYET+ ELTGG FRFIV
Sbjct  61   SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV  120

Query  121  ATHTDKNHVHNHILINAIDRNSDKKLIWNYTLERNLRMISDRISKIAGAKIIENRFSYRD  180
            ATH DK+H+HNHI+IN++D NSDKKL W+Y +ERNLRMISDR+SKIAGAKIIENR+S + 
Sbjct  121  ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQR  180

Query  181  YQKYRQSSHKFELNQRLYFLMQQSKSFDDFLEKAVQLHVHIDFSQKHSRFMMTDRAMTKP  240
            Y+ YR+++HK+EL+QRLYFLM++S+ F+DF  +A  LHV++DF +KH+ F +TD +M + 
Sbjct  181  YEVYRKTNHKYELKQRLYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQV  240

Query  241  IRGRQLSKRELYDEDFFRTHFAKIEIESRLEFLLNRVNSLEELLTKAKELNLTIDLKQKN  300
            +RG+QL++++ Y E+FF+  FAK EIES +EFLL +V+++++LL KAK + LTI+ KQK+
Sbjct  241  VRGKQLNRKQPYTEEFFKNYFAKREIESLMEFLLLKVENMDDLLQKAKLFGLTINPKQKH  300

Query  301  VIFILEDNGNQFSLSHKKISDKKLYDVNFFQNYFED-KEFVSSETVESLQEQYHAFQEER  359
            V F + +      + +  + +K+LYDV+FFQ+YF + K+  ++ET E + + Y+  +  +
Sbjct  301  VSFQFAGVE----VKETELDQKNLYDVEFFQDYFKNRKDWQAPET-EDFVQLYQEEKLSK  355

Query  360  DKDKVSNeeieeafeefkkkRDAVHEFEVELAEHQIEKLVDEGVYIKVSFGIKQSGLIFI  419
            +K+  S+E + E+++EFK +RDAVHEFEVEL+ +QIEK+VD+G+Y+KV FGI+Q GLIF+
Sbjct  356  EKELPSDEKFWESYQEFKSNRDAVHEFEVELSLNQIEKVVDDGIYVKVKFGIRQEGLIFV  415

Query  420  PNYQLDTLEEENQTKYKVYIRETTSYFVYNKEHSDKNQYIKGRTLIRQLTNDSRVIPYRR  479
            PN QLD +EE+   K KV+IRET+SY+VY+K+ ++KN Y+KGRTLIRQ++ +++ IP RR
Sbjct  416  PNMQLD-MEED---KVKVFIRETSSYYVYHKDAAEKNCYMKGRTLIRQFSYENQTIPLRR  471

Query  480  -PTVERLQEKITEINLLIELTETDKKYQDVKDDLVAEIAVLDIKLNQLNEKIATLNKMAE  538
             +TV+ ++EKI+E++ LIEL   ++ Y  +KD+LV E+A  ++++N+L+E+++TLN++AE
Sbjct  472  KATVDMIKEKIAEVDALIELEVENQSYVTIKDELVHELAASELRINELQERMSTLNQVAE  531

Query  539  VLINLKSEEPNSRKLARYDFSKLNLTESITAEQVTEEIRLL  579
             L+    E  +  KL   ++SKLN+TE+I+A+ V   ++ L
Sbjct  532  YLLA-SVESKQEMKL---NLSKLNITENISANIVEKKLKSL  568

20) SPCG_1035 in NC_010582


> NC_003028_P1|27|G26|15900926|NP_345530.1|Streptococcus_pneumoniae_TIGR4|+|19223..21046|-|SP_1056|Tn5252, 
relaxase
Length=607

 Score =  529 bits (1995),  Expect = 2e-151, Method: Compositional matrix adjust.
 Identities = 325/613 (54%), Positives = 476/613 (78%), Gaps = 15/613 (2%)

Query  1    MVVTKHFATHGKKYRRRLIKYILNPDKTDNLKLVSDFGMSNYLDFPSYEEMVEMYNVNFT  60
            MV+TKHFA HGK YRR+LIKYILNP+KT+NL LVSD+GM N+LDFPSYEEMV+MY+ NF 
Sbjct  1    MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI  60

Query  61   NNDKLYEYRNDRQEKHQQNIHAHHLIQSFSPEDNLTPEEINRIGYETIMELTGGRFRFIV  120
            +ND LY++R+DR E +Q++IHAHH+IQSFSPED++TPE+INRIGYET+ ELTGG+FRFIV
Sbjct  61   SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV  120

Query  121  ATHTDKDHIHNHILINAIDCNSDKKLIWNYALERNLRMISDRISKMAGAKIIEKRFSYRD  180
            ATH DKDH+HNHI+IN++D NSDKKL W+Y +ERNLRMISDR+SK+AGAKIIE+R+S + 
Sbjct  121  ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQR  180

Query  181  YQKYRATSHKFELKQRLYFLMQQSKSFDDFLEKAEQLHVHIDFSQKHSRFMMTDRAMTKP  240
            Y+ YR T+HK+ELKQRLYFLM++S+ F+DF  +A  LHV++DF +KH+ F +TD +M + 
Sbjct  181  YEVYRKTNHKYELKQRLYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQV  240

Query  241  IRGRQLSKRDLYDEDFFRMHFTKQEIASRLEFLLNCVNSLEGLLTKSKELNLTIDLKQKN  300
            +RG+QL++++ Y E+FF+  F+K+EI S +EFLL  V+++++LL K+K + LTI+ KQK+
Sbjct  241  VRGKQLNRKQPYTEEFFKNYFAKREIESLMEFLLLKVENMDDLLQKAKLFGLTINPKQKH  300

Query  301  VIFILEE-NGKQFSLSHKKISDEKLYDVNFFQDYFKNKEVGVSEGIENLQAQYRAFQEER  359
            V F +   + K+  L +K     +LYDV+FFQDYFKN+    +   E++   Y+  +  +
Sbjct  301  VSFQFAGVEVKETELDQK-----NLYDVEFFQDYFKNRKDWQAPETEDFVQLYQEEKLSK  355

Query  360  DKEKVSteeieeafetfkekRDAVHEFEVKLTEHQIEKLVDEGIYIKVSFGINQSGLIFI  419
            +KE  S E + E+++ FK +RDAVHEFEV L+ +QIEK+VD+GIY+KV FGI Q GLIF+
Sbjct  356  EKELPSDEKFWESYQEFKSNRDAVHEFEVELSLNQIEKVVDDGIYVKVKFGIRQEGLIFV  415

Query  420  PNYQLDIMEEENQKKYKVYIRETTSYFVYNKEHSDKNQYIKGRTLIRQLTNDSRVIPYRR  479
            PN QLD MEE+   K KV+IRET+SY+VY+K+ ++KN Y+KGRTLIRQ++ +++ IP RR
Sbjct  416  PNMQLD-MEED---KVKVFIRETSSYYVYHKDAAEKNCYMKGRTLIRQFSYENQTIPLRR  471

Query  480  -PTVERLQEKISEISLLIELTETDKKYQDIKDNLVSEIAELDIKLTQTNEKIATLNKMAE  538
             +TV+ ++EKI+E+  LIEL   ++ Y  IKD+LV E+A  ++++ + +E+++TLN++AE
Sbjct  472  KATVDMIKEKIAEVDALIELEVENQSYVTIKDELVHELAASELRINELQERMSTLNQVAE  531

Query  539  VLINSKSEGSGSQKLARHEFSKLNMTESTTLEQVNEELLKLQQEFGNVLDEYEKTIRKLG  598
             L+ S  E+    KL   ++SKLN+TE+ + + V+  L  L +++    + YEK + +L+
Sbjct  532  YLLAS-VESKQEMKL---NLSKLNITENISANIVEKKLKSLGNQLELERGRYEKMVVRLD  587

Query  599  QLFKVFDECINKE  611
            ++++ ++  ++K 
Sbjct  588  KFINRLNTGLSKG  600

21) BSA_13450 in NC_021485


> NC_003028_P1|27|G26|15900926|NP_345530.1|Streptococcus_pneumoniae_TIGR4|+|19223..21046|-|SP_1056|Tn5252, 
relaxase
Length=607

 Score =  528 bits (1994),  Expect = 3e-151, Method: Compositional matrix adjust.
 Identities = 319/613 (53%), Positives = 476/613 (78%), Gaps = 15/613 (2%)

Query  1    MVVTKHFVTHGKKYRRRLIKYILNPDKTNNLKLVSDFGMSNYLDFPSYEEMVEMYNVNFT  60
            MV+TKHF  HGK YRR+LIKYILNP+KTNNL LVSD+GM N+LDFPSYEEMV+MY+ NF 
Sbjct  1    MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI  60

Query  61   NNDKLYESRNDRQEKRQQNIHAHHLIQSFSPEDNLTPEEINRIGYETMMELTGGRFRFIV  120
            +ND LY+ R+DR E  Q++IHAHH+IQSFSPED++TPE+INRIGYET+ ELTGG+FRFIV
Sbjct  61   SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV  120

Query  121  ATHTDKNHVHNHILINAIDRNSDKKLIWNYALERNLRMISDRISKMAGAKIIEKRYSYCD  180
            ATH DK+H+HNHI+IN++D NSDKKL W+Y +ERNLRMISDR+SK+AGAKIIE+RYS   
Sbjct  121  ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQR  180

Query  181  YQKYRQSSHKFELKQRLYFLMQQSKSFDDFLEKAVQLHVHIDFSQKHSRFMMTDRAMTKP  240
            Y+ YR+++HK+ELKQRLYFLM++S+ F+DF  +A  LHV++DF +KH+ F +TD +M + 
Sbjct  181  YEVYRKTNHKYELKQRLYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQV  240

Query  241  IRGRQLRKRDLYDEEFFRIHFAKQEIESRLEFLLNCINSleelllkakelnlTIDLKQKN  300
            +RG+QL +++ Y EEFF+  FAK+EIES +EFLL  ++++++LL KAK + LTI+ KQK+
Sbjct  241  VRGKQLNRKQPYTEEFFKNYFAKREIESLMEFLLLKVENMDDLLQKAKLFGLTINPKQKH  300

Query  301  VTFILEEDTQKISLGHKKISDKKLYDVNFFQAYFKNKEVGDSEGLENLLEQYHAFQEERD  360
            V+F +      + + +  + +K+LYDV+FFQ YFKN+   ++   E++++ Y+  +  ++
Sbjct  301  VSFQFAG----VEVKETELDQKNLYDVEFFQDYFKNRKDWQAPETEDFVQLYQEEKLSKE  356

Query  361  KDKVSTEEIEEAFETYKEKRDAVHEFEVELAKHQIEKLADKGVYIKVSFGVKQSGLIFIP  420
            K+  S E + E+++ +K +RDAVHEFEVEL+ +QIEK+ D G+Y+KV FG++Q GLIF+P
Sbjct  357  KELPSDEKFWESYQEFKSNRDAVHEFEVELSLNQIEKVVDDGIYVKVKFGIRQEGLIFVP  416

Query  421  NYQLDILEEENRKKFKVYIRETTSYFIYNKEHSDKNQYIKGRTLIRQLTNDSRVIPYRR-  479
            N QLD+ E+    K KV+IRET+SY++Y+K+ ++KN Y+KGRTLIRQ++ +++ IP RR 
Sbjct  417  NMQLDMEED----KVKVFIRETSSYYVYHKDAAEKNCYMKGRTLIRQFSYENQTIPLRRK  472

Query  480  PTVERLQEKISEINLLIELTETDKKYQDIKDDLVAEIAELDIKLTQTNEKNAILNKMAEV  539
            +TV+ ++EKI+E++ LIEL   ++ Y  IKD+LV E+A  ++++ + +E+ + LN++AE 
Sbjct  473  ATVDMIKEKIAEVDALIELEVENQSYVTIKDELVHELAASELRINELQERMSTLNQVAEY  532

Query  540  LINLKSDDPNSRKLARYDFSKLNMTESISIEQVNKEIVMVQQDFKLYVNDYEKSTKRLEK  599
            L+       +S++  + ++SKLN+TE+IS + V+K +  + +++ L    YEK   RL+K
Sbjct  533  LLA----SVESKQEMKLNLSKLNITENISANIVEKKLKSLGNQLELERGRYEKMVVRLDK  588

Query  600  FLKILKFDNGVDK  612
            F++  +++ G+ K
Sbjct  589  FIN--RLNTGLSK  599

22) Spaf_1098 in NC_017905


> NC_003028_P1|27|G26|15900926|NP_345530.1|Streptococcus_pneumoniae_TIGR4|+|19223..21046|-|SP_1056|Tn5252, 
relaxase
Length=607

 Score =  510 bits (1922),  Expect = 2e-145, Method: Compositional matrix adjust.
 Identities = 321/614 (53%), Positives = 471/614 (77%), Gaps = 13/614 (2%)

Query  1    MVVTKHFATHGKKYRRRLIKYILNPDKTDNLKLVSDFGMSNYLDFPSHAEMVEMYNVNFS  60
            MV+TKHFA HGK YRR+LIKYILNP+KT+NL LVSD+GM N+LDFPS  EMV+MY+ NF 
Sbjct  1    MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI  60

Query  61   NNDKLYESRNDRQEKHQQTIHAHHLIQSFSPEDSLTPEEINRIGYETMMELTGGRFKFIV  120
            +ND LY+ R+DR E +Q+ IHAHH+IQSFSPED +TPE+INRIGYET+ ELTGG+F+FIV
Sbjct  61   SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV  120

Query  121  ATHTDKDHVHNHILINAIDRNSDKKLIWNYALERNLRMISDRISKVAGAKIIekrysyrd  180
            ATH DKDH+HNHI+IN++D NSDKKL W+Y +ERNLRMISDR+SK+AGAKIIE+RYS + 
Sbjct  121  ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQR  180

Query  181  ykkyressHKFELKQRLYFLLQQSKSFDDFLEKAKQLHVQIDFSQKHSRFLMTDRTMIKP  240
            Y  YR ++HK+ELKQRLYFL+++S+ F+DF  +A  LHV++DF +KH+ F++TD TM + 
Sbjct  181  YEVYRKTNHKYELKQRLYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQV  240

Query  241  IRGRQLSKRDLYDEEFFRTHFAKQEIESRLEFLLNRVNSLEELKTKVKELNLTINLKQKN  300
            +RG+QL++++ Y EEFF+  FAK+EIES +EFLL +V+++++L  K K + LTIN KQK+
Sbjct  241  VRGKQLNRKQPYTEEFFKNYFAKREIESLMEFLLLKVENMDDLLQKAKLFGLTINPKQKH  300

Query  301  VTFILEEDNQKISLGHQKISDKKLYDVKFFQDYFKNKEVGASEELENLQEQYHAFQKERD  360
            V+F +      + + +  + +K+LYDV FFQDYFKN+    + E E++ + Y+  +  ++
Sbjct  301  VSFQFAG----VEVKETELDQKNLYDVEFFQDYFKNRKDWQAPETEDFVQLYQEEKLSKE  356

Query  361  KDKVSteeieevfetfkekRDTVHEFEVELAENQIEELVDEGIYIKVSFGIKQSGLIFIP  420
            K+  S E + E ++ FK +RD+VHEFEVEL+ NQIE +VD+GIY+KV FGI+Q GLIF+P
Sbjct  357  KELPSDEKFWESYQEFKSNRDAVHEFEVELSLNQIEKVVDDGIYVKVKFGIRQEGLIFVP  416

Query  421  NYQLDIIEEDNQKKYKVYIRESTSYFVYNKEHSDKNQYIKGRTLIRQLTNDNRVIPYRR-  479
            N QLD+ E+    K KV+IRE++SY+VY+K+ ++KN Y+KGRTLIRQ++ +N+ IP RR 
Sbjct  417  NMQLDMEED----KVKVFIRETSSYYVYHKDAAEKNCYMKGRTLIRQFSYENQTIPLRRK  472

Query  480  PTVDRLQEKISEINLLIELTERDKKYQDIKDELVAEIAELDIKLTQTNEKIATLNKMAEV  539
            +TVD ++EKI+E++ LIEL   ++ Y  IKDELV E+A  ++++ + +E+++TLN++AE 
Sbjct  473  ATVDMIKEKIAEVDALIELEVENQSYVTIKDELVHELAASELRINELQERMSTLNQVAEY  532

Query  540  LINLKSEDVSSRKLARYDFSKLNLPESITVEQVTEEIRVFQEELGHYLYEYERLIRILEE  599
            L+      V S++  + ++SKLN+ E+I+ + V   ++ + ++L      YE+++  L+ 
Sbjct  533  LLA----SVESKQEMKLNLSKLNITENISANIVEKKLKSLGNQLELERGRYEKMVVRLDK  588

Query  600  FVKMLNITTNNPNP  613
            F++ LN   ++ + 
Sbjct  589  FINRLNTGLSKGDG  602

23) SSU12_0861 in NC_017619


> NC_003028_P1|27|G26|15900926|NP_345530.1|Streptococcus_pneumoniae_TIGR4|+|19223..21046|-|SP_1056|Tn5252, 
relaxase
Length=607

 Score =  509 bits (1919),  Expect = 3e-145, Method: Compositional matrix adjust.
 Identities = 321/608 (53%), Positives = 475/608 (79%), Gaps = 13/608 (2%)

Query  1    MVITKHFATHGKKSRRRLIKYILSPEKTDNLKLISDYGMSNYLDFPNYLEMVEMYNANFL  60
            MVITKHFA HGK  RR+LIKYIL+PEKT+NL L+SDYGM N+LDFP+Y EMV+MY+ NF+
Sbjct  1    MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI  60

Query  61   NNDKLYETRNDRQEIHQQNIHAHHLIQSFSPEDNLTPEEINRIGYETMMELTGGRFRFIV  120
            +ND LY+ R+DR E +Q++IHAHH+IQSFSPED++TPE+INRIGYET+ ELTGG+FRFIV
Sbjct  61   SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV  120

Query  121  ATHTDKDHTHNHILINAIDSNSDKKLIWNYALERNLRMISDRISKMAGAKIIEKCYSYRD  180
            ATH DKDH HNHI+IN++DSNSDKKL W+Y +ERNLRMISDR+SK+AGAKIIE+ YS + 
Sbjct  121  ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQR  180

Query  181  YQKYRQSSHKFELKQRLYFLMQQSKSFDDFLEKAVQLHVHIDFSQKHSRFMMTDRAMTKP  240
            Y+ YR+++HK+ELKQRLYFLM++S+ F+DF  +A  LHV++DF +KH+ F +TD +M + 
Sbjct  181  YEVYRKTNHKYELKQRLYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQV  240

Query  241  IRGRQLSKRDLYDEEFFRIHFAKQEIESRLEFLLHCVNSleelllkakelnlTIDLKQKN  300
            +RG+QL++++ Y EEFF+  FAK+EIES +EFLL  V+++++LL KAK + LTI+ KQK+
Sbjct  241  VRGKQLNRKQPYTEEFFKNYFAKREIESLMEFLLLKVENMDDLLQKAKLFGLTINPKQKH  300

Query  301  VTFILEEDTQKISLGHKKISDKKLYDVNFFQDYFKNKEVGDSEGLENLQEQYHAFQEERD  360
            V+F +      + + +  + +K+LYDV+FFQDYFKN+   ++   E++ + Y+  +  ++
Sbjct  301  VSFQFAG----VEVKETELDQKNLYDVEFFQDYFKNRKDWQAPETEDFVQLYQEEKLSKE  356

Query  361  KDKVSteeieevfetfkekRDAVHEFEVELAEHQIEKLVDEGIYIKVSFGIKQSGFVFIP  420
            K+  S E + E ++ FK +RDAVHEFEVEL+ +QIEK+VD+GIY+KV FGI+Q G++F+P
Sbjct  357  KELPSDEKFWESYQEFKSNRDAVHEFEVELSLNQIEKVVDDGIYVKVKFGIRQEGLIFVP  416

Query  421  NYQLDIIEEDNQKKYKVYIRETTSYFVYNKEYSDKNQYIKGRTLIRQLTNDSSVISYRR-  479
            N QLD+ E+    K KV+IRET+SY+VY+K+ ++KN Y+KGRTLIRQ++ ++  I+ RR 
Sbjct  417  NMQLDMEED----KVKVFIRETSSYYVYHKDAAEKNCYMKGRTLIRQFSYENQTIPLRRK  472

Query  480  PTVESLQKKITEINLLIELTETDKKYQDIKDELVTEIAELDTKLTQINEKIATLNKMAEV  539
            +TV+ ++ KI+E++ LIEL   ++ Y  IKDELV E+A  + ++ +++E+++TLN++AE 
Sbjct  473  ATVDMIKEKIAEVDALIELEVENQSYVTIKDELVHELAASELRINELQERMSTLNQVAEY  532

Query  540  LINLKSDDLSSRKLARYDFSKLNLTESITAELVTEEIRLLQVELGYYLGEYEGVARNLEK  599
            L+      + S++  + ++SKLN+TE+I+A++V   ++ L  +L    G YE +   L+K
Sbjct  533  LLA----SVESKQEMKLNLSKLNITENISANIVEKKLKSLGNQLELERGRYEKMVVRLDK  588

Query  600  FLKIFNSN  607
            F++ +N+ 
Sbjct  589  FINRLNTG  596

24) SSUD9_1035 in NC_017620


> NC_003028_P1|27|G26|15900926|NP_345530.1|Streptococcus_pneumoniae_TIGR4|+|19223..21046|-|SP_1056|Tn5252, 
relaxase
Length=607

 Score =  489 bits (1842),  Expect = 3e-139, Method: Compositional matrix adjust.
 Identities = 314/619 (51%), Positives = 485/619 (79%), Gaps = 13/619 (2%)

Query  1    MVITKHYAVHGQKYRRQLIKYILDPKKTRNLSLISDFGMSNYLDFPDYVELVKMYQNNFL  60
            MVITKH+A+HG+ YRR+LIKYIL+P KT NL+L+SD+GM N+LDFP Y E+V+MY++NF+
Sbjct  1    MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI  60

Query  61   SNDQLYDSRFDRQEKKQQKIHAHHIIQSFSPEDKLSPEEINRIGYETIKELTGGHYKFIV  120
            SND LYD R DR E +Q+KIHAHHIIQSFSPED ++PE+INRIGYET+KELTGG ++FIV
Sbjct  61   SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV  120

Query  121  ATHVDQDHChnhiiinsinsqsqKKLKWDYALERNLQMISDRISKVAGAKIIPLKRYSHR  180
            ATHVD+DH HNHIIINS++S+S+KKLKWDY +ERNL+MISDR+SK+AGAKII  +RYSH+
Sbjct  121  ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIE-NRYSHQ  179

Query  181  DYEVYRSSNHKYELKQRLFFLMENSIDFNDFMQKAEQLNVKIDFSRKHSRFFMTDRNMKQ  240
             YEVYR +NHKYELKQRL+FLME+S DF+DF ++A  L+V +DF +KH+ FF+TD  MKQ
Sbjct  180  RYEVYRKTNHKYELKQRLYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQ  239

Query  241  VIRGDKLNKREPYSKEFFQHYFTKRKIEQILEFLLPRSKSYDDFVEKAGLLGLELKSKIK  300
            V+RG +LN+++PY+ EFF++YF+KR IE ++EFLL +  + DD+++KA L+GL +++K K
Sbjct  240  VVRGKQLNRKQPYTEEFFKNYFAKREIESLMEFLLLKVENMDDLLQKAKLFGLTINPKQK  299

Query  301  TIDFVLTDGKSCISIPNKSLRKKNLYDTTYFETYFKEHDVVEVLQNSDVKTVFEKFEMQQ  360
             + F +++    + + +  L +KNLYD  +F+ YFK++   +  +  D   +++   + +
Sbjct  300  HVSFQFAG----VEVKETELDQKNLYDVEFFQDYFKNRKDWQAPETEDFVQLYQEEKLSK  355

Query  361  YSDVLTVEEITEAYETYKTKRDAvhefeveiaeeqvekvvSDGLFIKVWMGIGQEGLIFI  420
              ++ + E + E+Y+ +K++RDAVHEFEVE++ +Q+EKVV DG+++KV  GI QEGLIF+
Sbjct  356  EKELPSDEKFWESYQEFKSNRDAVHEFEVELSLNQIEKVVDDGIYVKVKFGIRQEGLIFV  415

Query  421  PNHQLNILEQENMKQYQVFIRETSSYFIYHKEDSEKNRYMKGRDLIRQLTFDNRSLPYKR  480
            PN QL+ +E++++K   VFIRETSSY++YHK+ +EKN YMKGR LIRQ++++N+++P +R
Sbjct  416  PNMQLD-MEEDKVK---VFIRETSSYYVYHKDAAEKNCYMKGRTLIRQFSYENQTIPLRR  471

Query  481  RTSLSSLQQKIEEINLLMTLNIQNKSFLELKDELVGDIAQLDIELTNLQEKIATLNKMAE  540
            ++++  +++KI E++ L+ L+++N+S++ +KDELV ++A  ++ + +LQE+++TLN++AE
Sbjct  472  KATVDMIKEKIAEVDALIELEVENQSYVTIKDELVHELAASELRINELQERMSTLNQVAE  531

Query  541  VVVNLQSDNQDTKQLAKYECSKMNLSQNVTigqieseieiiqnqLDNKIEEYENAVRKLD  600
             ++     + ++KQ  K + SK+N+++N++   +E  +  + NQL+     YE+ V +LD
Sbjct  532  YLLA----SVESKQEMKLNLSKLNITENISANIVEKKLKSLGNQLELERGRYEKMVVRLD  587

Query  601  EYVRVLNMDKYKTDDFSIH  619
             ++  LN +  K D++ ++
Sbjct  588  KFINRLNTGLSKGDGIDFQ  606

25) SAG1250 in NC_004116


> NC_003028_P1|27|G26|15900926|NP_345530.1|Streptococcus_pneumoniae_TIGR4|+|19223..21046|-|SP_1056|Tn5252, 
relaxase
Length=607

 Score =  473 bits (1782),  Expect = 2e-134, Method: Compositional matrix adjust.
 Identities = 316/623 (51%), Positives = 488/623 (79%), Gaps = 21/623 (3%)

Query  1    MVITKHYAVHGKKYRRQLIKYILDPKKTRNLSLISDFGMSNYLDFPDYVELVKMYQNNFL  60
            MVITKH+A+HGK YRR+LIKYIL+P KT NL+L+SD+GM N+LDFP Y E+V+MY++NF+
Sbjct  1    MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI  60

Query  61   SNDQLYDSRFDRQEKKQQKIHAHHIIQSFSPEDKLSPEEINRIGYETIKELIGGQYKFIV  120
            SND LYD R DR E +Q+KIHAHHIIQSFSPED ++PE+INRIGYET+KEL GG+++FIV
Sbjct  61   SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV  120

Query  121  ATHVDQDHChnhiiinsinsqsqKKLKWDYALERNLQMISDRISKVAGAKIIPPKRYSHR  180
            ATHVD+DH HNHIIINS++S+S+KKLKWDY +ERNL+MISDR+SK+AGAKII  +RYSH+
Sbjct  121  ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKII-ENRYSHQ  179

Query  181  DYEVYRRSNHKYELKQRLFFLMEHSIDFNDFMQKAEQLNVKIDFSRKHSRFFMTDRNMKQ  240
             YEVYR++NHKYELKQRL+FLMEHS DF+DF ++A  L+V +DF +KH+ FF+TD  MKQ
Sbjct  180  RYEVYRKTNHKYELKQRLYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQ  239

Query  241  VIQGDKLNKREPYSKEYFQRYFAkkkielileflllRSNSFDDLVEKARLLGLELKSKKK  300
            V++G +LN+++PY+ E+F+ YFAK+ IE ++EFLLL+ ++ DDL++KA+L+GL +++K+K
Sbjct  240  VVRGKQLNRKQPYTEEFFKNYFAKREIESLMEFLLLKVENMDDLLQKAKLFGLTINPKQK  299

Query  301  TIDFVLSDGKSCISIPNKSLRKKNLYDTTYFDSYFKEHDVFEVLHNNE-VKIEFEKFETQ  359
             + F +++    + + +  L +KNLYD  +F+ YFK++   +  + ++ V++    ++ +
Sbjct  300  HVSFQFAG----VEVKETELDQKNLYDVEFFQDYFKNRKDWQAPETEDFVQL----YQEE  351

Query  360  QLS---EILTVEEITEAYETYKTKRDAvhefeveiteeqiekivLDGLFVKVWMGIGQEG  416
            +LS   E+ + E + E+Y+ +K++RDAVHEFEVE++ +QIEK+V DG++VKV  GI QEG
Sbjct  352  KLSKEKELPSDEKFWESYQEFKSNRDAVHEFEVELSLNQIEKVVDDGIYVKVKFGIRQEG  411

Query  417  LIFIPNHQLNILEQENKKQYQVFIRETSSYFIYHKEDSEMNRFMKGRDLIRQLTFDNKSL  476
            LIF+PN QL++ E+  K    VFIRETSSY++YHK+ +E N +MKGR LIRQ++++N+++
Sbjct  412  LIFVPNMQLDMEEDKVK----VFIRETSSYYVYHKDAAEKNCYMKGRTLIRQFSYENQTI  467

Query  477  PYKRRISLVSLQQKIEEINLLMTLNIQNKSFLELKDELVGDIAQLDIELTNLQDKNTTLN  536
            P +R+ ++  +++KI E++ L+ L+++N+S++ +KDELV ++A  ++ + +LQ++ +TLN
Sbjct  468  PLRRKATVDMIKEKIAEVDALIELEVENQSYVTIKDELVHELAASELRINELQERMSTLN  527

Query  537  KMAEVVVNLQSDNQDTKQLAKYECSKMNLSQNVTIGQIESEIEMIQNQLDNKIEEYENAV  596
            ++AE ++     + ++KQ  K + SK+N+++N++   +E  +  + NQL+     YE+ V
Sbjct  528  QVAEYLLA----SVESKQEMKLNLSKLNITENISANIVEKKLKSLGNQLELERGRYEKMV  583

Query  597  RKLDEYVRVLNMDKYKTDDFSIH  619
             +LD ++  LN +  K D++ ++
Sbjct  584  VRLDKFINRLNTGLSKGDGIDFQ  606

26) SDE12394_04825 in NC_017567


> NC_003028_P1|27|G26|15900926|NP_345530.1|Streptococcus_pneumoniae_TIGR4|+|19223..21046|-|SP_1056|Tn5252, 
relaxase
Length=607

 Score =  473 bits (1782),  Expect = 2e-134, Method: Compositional matrix adjust.
 Identities = 316/623 (51%), Positives = 488/623 (79%), Gaps = 21/623 (3%)

Query  1    MVITKHYAVHGKKYRRQLIKYILDPKKTRNLSLISDFGMSNYLDFPDYVELVKMYQNNFL  60
            MVITKH+A+HGK YRR+LIKYIL+P KT NL+L+SD+GM N+LDFP Y E+V+MY++NF+
Sbjct  1    MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI  60

Query  61   SNDQLYDSRFDRQEKKQQKIHAHHIIQSFSPEDKLSPEEINRIGYETIKELIGGQYKFIV  120
            SND LYD R DR E +Q+KIHAHHIIQSFSPED ++PE+INRIGYET+KEL GG+++FIV
Sbjct  61   SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV  120

Query  121  ATHVDQDHChnhiiinsinsqsqKKLKWDYALERNLQMISDRISKVAGAKIIPPKRYSHR  180
            ATHVD+DH HNHIIINS++S+S+KKLKWDY +ERNL+MISDR+SK+AGAKII  +RYSH+
Sbjct  121  ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKII-ENRYSHQ  179

Query  181  DYEVYRRSNHKYELKQRLFFLMEHSIDFNDFMQKAEQLNVKIDFSRKHSRFFMTDRNMKQ  240
             YEVYR++NHKYELKQRL+FLMEHS DF+DF ++A  L+V +DF +KH+ FF+TD  MKQ
Sbjct  180  RYEVYRKTNHKYELKQRLYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQ  239

Query  241  VIQGDKLNKREPYSKEYFQRYFAkkkielileflllRSNSFDDLVEKARLLGLELKSKKK  300
            V++G +LN+++PY+ E+F+ YFAK+ IE ++EFLLL+ ++ DDL++KA+L+GL +++K+K
Sbjct  240  VVRGKQLNRKQPYTEEFFKNYFAKREIESLMEFLLLKVENMDDLLQKAKLFGLTINPKQK  299

Query  301  TIDFVLSDGKSCISIPNKSLRKKNLYDTTYFDSYFKEHDVFEVLHNNE-VKIEFEKFETQ  359
             + F +++    + + +  L +KNLYD  +F+ YFK++   +  + ++ V++    ++ +
Sbjct  300  HVSFQFAG----VEVKETELDQKNLYDVEFFQDYFKNRKDWQAPETEDFVQL----YQEE  351

Query  360  QLS---EILTVEEITEAYETYKTKRDAvhefeveiteeqiekivLDGLFVKVWMGIGQEG  416
            +LS   E+ + E + E+Y+ +K++RDAVHEFEVE++ +QIEK+V DG++VKV  GI QEG
Sbjct  352  KLSKEKELPSDEKFWESYQEFKSNRDAVHEFEVELSLNQIEKVVDDGIYVKVKFGIRQEG  411

Query  417  LIFIPNHQLNILEQENKKQYQVFIRETSSYFIYHKEDSEMNRFMKGRDLIRQLTFDNKSL  476
            LIF+PN QL++ E+  K    VFIRETSSY++YHK+ +E N +MKGR LIRQ++++N+++
Sbjct  412  LIFVPNMQLDMEEDKVK----VFIRETSSYYVYHKDAAEKNCYMKGRTLIRQFSYENQTI  467

Query  477  PYKRRISLVSLQQKIEEINLLMTLNIQNKSFLELKDELVGDIAQLDIELTNLQDKNTTLN  536
            P +R+ ++  +++KI E++ L+ L+++N+S++ +KDELV ++A  ++ + +LQ++ +TLN
Sbjct  468  PLRRKATVDMIKEKIAEVDALIELEVENQSYVTIKDELVHELAASELRINELQERMSTLN  527

Query  537  KMAEVVVNLQSDNQDTKQLAKYECSKMNLSQNVTIGQIESEIEMIQNQLDNKIEEYENAV  596
            ++AE ++     + ++KQ  K + SK+N+++N++   +E  +  + NQL+     YE+ V
Sbjct  528  QVAEYLLA----SVESKQEMKLNLSKLNITENISANIVEKKLKSLGNQLELERGRYEKMV  583

Query  597  RKLDEYVRVLNMDKYKTDDFSIH  619
             +LD ++  LN +  K D++ ++
Sbjct  584  VRLDKFINRLNTGLSKGDGIDFQ  606

27) MSA_13860 in NC_021486


> NC_003028_P1|27|G26|15900926|NP_345530.1|Streptococcus_pneumoniae_TIGR4|+|19223..21046|-|SP_1056|Tn5252, 
relaxase
Length=607

 Score =  407 bits (1530),  Expect = 1e-114, Method: Compositional matrix adjust.
 Identities = 262/451 (59%), Positives = 364/451 (81%), Gaps = 8/451 (1%)

Query  1    MVVTKHFATHGKKYRRRLIKYILNPDKTDNLKLVSDFGMSNYLDFPSYEEMVEMYNVNFT  60
            MV+TKHFA HGK YRR+LIKYILNP+KT+NL LVSD+GM N+LDFPSYEEMV+MY+ NF 
Sbjct  1    MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI  60

Query  61   NNDKLYESRNDRQEKHQQNIHAHHLIQSFSPEDNLTPEEINRIGYETMMELTGGRFRFIV  120
            +ND LY+ R+DR E +Q++IHAHH+IQSFSPED++TPE+INRIGYET+ ELTGG+FRFIV
Sbjct  61   SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV  120

Query  121  ATHTDKDHIHNHILINSIDQNSDKKLIWNYALERNLRMISDRISKMAGAKIIEKRSSYRD  180
            ATH DKDH+HNHI+INS+D NSDKKL W+Y +ERNLRMISDR+SK+AGAKIIE+R S + 
Sbjct  121  ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQR  180

Query  181  YQRYRESSHKFELKQRLYFLMHQSKSFDDFLEKAEQLHVHIDFSQKHSRFIMSDREMSKP  240
            Y+ YR ++HK+ELKQRLYFLM++S+ F+DF  +A  LHV++DF +KH+ F+++D  M + 
Sbjct  181  YEVYRKTNHKYELKQRLYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQV  240

Query  241  IRGRQLSKRDLYDEDFFHTHFAKIeiesqlefllllvnsleellTKAKELNLSIDLKQKN  300
            +RG+QL++++ Y E+FF   FAK EIES +EFLLL V+++++LL KAK + L+I+ KQK+
Sbjct  241  VRGKQLNRKQPYTEEFFKNYFAKREIESLMEFLLLKVENMDDLLQKAKLFGLTINPKQKH  300

Query  301  VTFTLEENGKQISLSQKKISEKKLYDVAFFQNYFEDKVFVFSEAVESLQEQYHAFHEERD  360
            V+F +      + + +  + +K+LYDV FFQ+YF ++    +   E + + Y+     ++
Sbjct  301  VSFQFAG----VEVKETELDQKNLYDVEFFQDYFKNRKDWQAPETEDFVQLYQEEKLSKE  356

Query  361  kekvateeieeafeefkkkRDSVHEFEVELAEHQIEKLVDGGIYIKVSFGIKQSGLVFIP  420
            KE  + E + E+++EFK +RD+VHEFEVEL+ +QIEK+VD+GIY+KV FGI+Q GL+F+P
Sbjct  357  KELPSDEKFWESYQEFKSNRDAVHEFEVELSLNQIEKVVDDGIYVKVKFGIRQEGLIFVP  416

Query  421  NYQLDIMEEENQKKYKVYIRETTSYFIYNKN  451
            N QLD MEE+   K KV+IRET+SY++Y+K+
Sbjct  417  NMQLD-MEED---KVKVFIRETSSYYVYHKD  443

28) SDEG_1335 in NC_012891


> NC_003028_P1|27|G26|15900926|NP_345530.1|Streptococcus_pneumoniae_TIGR4|+|19223..21046|-|SP_1056|Tn5252, 
relaxase
Length=607

 Score =  338 bits (1270),  Expect = 3e-94, Method: Compositional matrix adjust.
 Identities = 209/446 (47%), Positives = 333/446 (75%), Gaps = 13/446 (2%)

Query  1    MISDRISKMAGAKIIEKRYSYRDYQKYRQSSHKFELKQRLYFLMQQSKSFDDFLEKAVQL  60
            MISDR+SK+AGAKIIE+RYS + Y+ YR+++HK+ELKQRLYFLM++S+ F+DF  +A  L
Sbjct  158  MISDRFSKIAGAKIIENRYSHQRYEVYRKTNHKYELKQRLYFLMEHSRDFEDFKKNAPLL  217

Query  61   HVYIDFSQKHSRFMMTDRAMTKPIRGRQLSKRDLYDEEFFRTHFAKQEIESRLEFLLNCV  120
            HV +DF +KH+ F +TD +M + +RG+QL++++ Y EEFF+  FAK+EIES +EFLL  V
Sbjct  218  HVEMDFRHKHATFFITDSTMKQVVRGKQLNRKQPYTEEFFKNYFAKREIESLMEFLLLKV  277

Query  121  NSLEELRLKAKELNLTIDLKQKNVSFTLEENGNQISLSHKKISDKKLYDVNFFQDYFKNM  180
            +++++L  KAK + LTI+ KQK+VSF +      + + +  + +K+LYDV+FFQDYFKN 
Sbjct  278  ENMDDLLQKAKLFGLTINPKQKHVSFQFAG----VEVKETELDQKNLYDVEFFQDYFKNR  333

Query  181  EVGDSEGLENFKEQYHTFQEERDKDKVSNEEIEEAFETFKKKRDAVHEFEVELAGHQIEK  240
               ++   E+F + Y+  +  ++K+  S+E + E+++ FK +RDAVHEFEVEL+ +QIEK
Sbjct  334  KDWQAPETEDFVQLYQEEKLSKEKELPSDEKFWESYQEFKSNRDAVHEFEVELSLNQIEK  393

Query  241  LVDKGVYIKVSFGVKQSGLIFIPNYQLDIMEEDNQTKYKVYIRETTSYFVYNKEYSDKNK  300
            +VD G+Y+KV FG++Q GLIF+PN QLD MEED   K KV+IRET+SY+VY+K+ ++KN 
Sbjct  394  VVDDGIYVKVKFGIRQEGLIFVPNMQLD-MEED---KVKVFIRETSSYYVYHKDAAEKNC  449

Query  301  YLKGRTMIRQLTNDSRMIPYRR-PTVERLQEKISEINLLIELNETDNKYQDIKDDLVAEI  359
            Y+KGRT+IRQ++ +++ IP RR +TV+ ++EKI+E++ LIEL+  ++ Y  IKD+LV E+
Sbjct  450  YMKGRTLIRQFSYENQTIPLRRKATVDMIKEKIAEVDALIELEVENQSYVTIKDELVHEL  509

Query  360  AELDIKMTQENEKITTLNKMAEVLINLKSDETSSRKLAKYDFSKLNLTESITLKQVNDEI  419
            A  ++++ + +E+++TLN++AE L+        S++  K ++SKLN+TE+I+ + V+  +
Sbjct  510  AASELRINELQERMSTLNQVAEYLLA----SVESKQEMKLNLSKLNITENISANIVEKKL  565

Query  420  RVLQEELGHYLDEYEGLARRLEMFVS  445
            + L ++L    + YE +  RL+ F++
Sbjct  566  KSLGNQLELERGRYEKMVVRLDKFIN  591