>NC_000921_P1|27|G27|15611562|NP_223213.1|Helicobacter_pylori_J99|+|33106..36609|cagA|jhp0495|cag
Length = 3504
Score = 1269 bits (3274), Expect = 0.0
Identities = 700/778 (90%)
Strand = Plus / Plus
Query: 1269 gaaatgggattaacaaccctagcttctatctctacaaaacagaccaactcacaggcttgg 1328
|||| ||||||||||||||||| || |||||||||||| |||||||||||||||||
Sbjct: 1107 gaaa-gggattaacaaccctagtttttatctctacaaagaagaccaactcacaggctcac 1165
Query: 1329 aacaagcgttgagtcaagaagagatccaaaacaaagtggatttcatggaacttcttgcac 1388
||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1166 aacgagcattgagtcaagaagagatccaaaacaaagtggatttcatggaatttcttgcac 1225
Query: 1389 aaaacaacgctagattagataacttgagcgaggaagagaaagaaaagttccaaactgaga 1448
|||| || |||| |||||| ||||||||| || ||||||||||||| ||||||| |||||
Sbjct: 1226 aaaataatgctaaattagacaacttgagcaagaaagagaaagaaaaattccaaaatgaga 1285
Query: 1449 ttggaaatttccaaaaagaccctaaggcttatttagactccctagggaatgatcgcattg 1508
||| | |||| ||||||||| ||||||||||||||||| ||||||||||||||| |||||
Sbjct: 1286 ttgaagattttcaaaaagactctaaggcttatttagacgccctagggaatgatcacattg 1345
Query: 1509 cttttgtttctaaaaaagaccaaaagcatttagctttggttactgagtttggtaatgggg 1568
|||||||||||||||||||| |||| ||||||||||| ||| ||||||||||||||||||
Sbjct: 1346 cttttgtttctaaaaaagacaaaaaacatttagctttagttgctgagtttggtaatgggg 1405
Query: 1569 aattgagctatactctcaaagattatgggaaaaaacaagatagagctttagatagggaga 1628
|||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 1406 aattgagctacactctcaaagattatgggaaaaaagcagataaagctttagatagggagg 1465
Query: 1629 caaaaaccactcttcaaggtaacctaaagcatgatggcgtgatgtttgtcaattattcca 1688
||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||| |
Sbjct: 1466 caaaaaccactcttcaaggtagcctaaaacatgatggcgtgatgtttgttgattattcta 1525
Query: 1689 atttcaaatacaccaacgcctccaagagtcctgatgagggtataggcgctacgaatggcg 1748
||||||||||||||||||||||||||||||||||| ||||| | || |||||||||||||
Sbjct: 1526 atttcaaatacaccaacgcctccaagagtcctgataagggtgtgggtgctacgaatggcg 1585
Query: 1749 tttcccatttggaagcaaattttagcaaggtggctgtctttaatttgcctgatttaaatg 1808
|||||||||| |||||| ||||||||||| |||||||||||||||||| ||||||||
Sbjct: 1586 tttcccatttagaagcaggctttagcaaggtagctgtctttaatttgcctaatttaaata 1645
Query: 1809 gtctcgctatctctagttttgcaaggcggaatttagaggataaactgatcgctaaaggat 1868
|||||||||| ||||| | | ||||| | |||||||||||||||| |||||||||||||
Sbjct: 1646 atctcgctatcactagtgtcgtaaggcaggatttagaggataaactaatcgctaaaggat 1705
Query: 1869 tgcccccaaaagacgctaataagatcatcaaagactttttgaacagcaacaaggaattgc 1928
|| ||||| |||| ||||||||| | ||||||| ||||||| ||||||||| ||||||
Sbjct: 1706 tgtccccacaagaagctaataagcttgtcaaagattttttgagcagcaacaaagaattgg 1765
Query: 1929 ttgaaaaagctttagacttcaataaagctgtagctgaagctaaaaatacaggcaattatg 1988
||| |||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 1766 ttggaaaagctttaaacttcaataaagctgtagctgaagctaaaaacacaggcaactatg 1825
Query: 1989 acggagtgaaaaaagctcaaaaagatcttgaaaaatctataaggaaacgagagcgttt 2046
||| |||||| ||||||| |||||||||||||||||| ||| |||||||||||||||
Sbjct: 1826 acgaggtgaaacaagctcagaaagatcttgaaaaatctctaaagaaacgagagcgttt 1883
Score = 875 bits (2259), Expect = e-255
Identities = 476/518 (92%)
Strand = Plus / Plus
Query: 56 cggcttttaatccacaacaatttatcaataatcttcaagtggcttttattaaacttgata 115
|||||||||| || || |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 41 cggcttttaacccgcagcaatttatcaataatcttcaagtggcttttattaaagttgata 100
Query: 116 gtgctgtcgcttcatttgatcccgatcaaaaaccaatcgttgataagaacgatagggata 175
|| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 101 atgttgtcgcttcatttgatcctaatcaaaaaccaatcgttgataagaatgatagggata 160
Query: 176 acaggcaagcttttaatgtaatctcgcaattaagggaagaatacgccaataaagcgatca 235
| |||||||||||| | ||||||||| ||||||| |||| ||| |||||||||||||
Sbjct: 161 ataggcaagcttttgagaaaatctcgcagctaagggaggaattcgctaataaagcgatca 220
Query: 236 aaaatcccaccaaaaagaatcagtatttttcagactttatcgataaaagcaatgatttga 295
||||||| |||||||||||||||||||||||| ||||||| ||| ||||||||||| |
Sbjct: 221 aaaatcctaccaaaaagaatcagtatttttcaagctttatcagtaagagcaatgatttaa 280
Query: 296 tcaacaaaaacgatctcattgatacagattcttccacaaagagctttgaaaaatttgggg 355
|| ||||| || ||||||||||||||| |||||||| |||||||||| | |||||||||
Sbjct: 281 tcgacaaagacaatctcattgatacaggttcttccataaagagctttcagaaatttggga 340
Query: 356 ctcagcgttaccaaatttttatgaattgggtgtcccatcaaaaagatccgtctaaaatca 415
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 341 ctcagcgttaccaaatttttatgaattgggtgtcccatcaaaacgatccgtctaaaatca 400
Query: 416 acacccaaaaaatccgagattttatggaaaatatcatacaaccccctatctctgatgata 475
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 acacccaaaaaatccgaggttttatggaaaatatcatacaaccccctatctctgatgata 460
Query: 476 aagaaaaagcggagtttttgaggtctgccaaacaatcttttgcaggaattatcataggga 535
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct: 461 aagagaaagcggagtttttgaggtctgccaaacaagcttttgcaggaattatcataggaa 520
Query: 536 accaaacccgatcggatgaaaaattcatgggcgttttt 573
|||||| |||||||||| |||||||||||||||| |||
Sbjct: 521 accaaatccgatcggatcaaaaattcatgggcgtgttt 558
Score = 840 bits (2167), Expect = e-244
Identities = 462/511 (90%)
Strand = Plus / Plus
Query: 2081 agcggcaacaaaaataaaatggaagcgaaagttcaagctaacagccaaaaagatgggatt 2140
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||
Sbjct: 1918 agcggcaacaaaaataaaatggaagcaaaatctcaagctaacagccaaaaagatgagatt 1977
Query: 2141 tttaagcttatcaatgaagaggctcataaggaagcaagaatcgccgcttacgctcagaat 2200
||| | | |||||| |||||||| ||| ||| |||||| ||||||||||||||||
Sbjct: 1978 tttgcgttgatcaataaagaggctaatagggatgcaagagcaatcgcttacgctcagaat 2037
Query: 2201 cttaaaggcatcaggagggaattgtttgataaagttaaaaatctcaacaagaatttgaaa 2260
||||||||||||| |||||||||| ||||||| || ||||| |||||||| ||||||||
Sbjct: 2038 cttaaaggcatcaaaagggaattgtctgataaacttgaaaatatcaacaaggatttgaaa 2097
Query: 2261 gactttgataaatcttttgatgcgctcaaaagtggcaaaaataaggatttcagcaaggca 2320
|||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 2098 gactttagtaaatcttttgatgaattcaaaaatggcaaaaataaggatttcagcaaggca 2157
Query: 2321 gaagaaacgctaaaagcccttgaaagctcggtgaaagatttgggtatcaatccagaatgg 2380
|||||||| |||||||||||| || |||||||||||||||| ||||||||||||||||||
Sbjct: 2158 gaagaaacactaaaagcccttaaaggctcggtgaaagatttaggtatcaatccagaatgg 2217
Query: 2381 atttcaaaagttgaaaaccttaatgcagctttgaatgaattcaaaaatggcaaaaataag 2440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2218 atttcaaaagttgaaaaccttaatgcagctttgaatgaattcaaaaatggcaaaaataag 2277
Query: 2441 gatttcagcaaggtaacacaagcaaaaagcgaccttgaaaattccattaaggatgtgctc 2500
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 2278 gatttcagcaaggtaacgcaagcaaaaagcgaccttgaaaattccattaaagatgtgatc 2337
Query: 2501 atcaatcaagagataacggataaagttgacaatctcaatcaggctgtattaagggctaaa 2560
||||||||| ||||||||||||||||||| ||||||||||| || |||| | |||||||
Sbjct: 2338 atcaatcaaaagataacggataaagttgataatctcaatcaagcggtatcagtggctaaa 2397
Query: 2561 gcgataggcgattttagtggggtagagcaag 2591
|| | || ||||| ||||||||||||||||
Sbjct: 2398 gcaacgggtgatttcagtggggtagagcaag 2428
Score = 636 bits (1642), Expect = e-183
Identities = 354/391 (91%)
Strand = Plus / Plus
Query: 3016 agcgaaattggacaattacgctactaacagccacacacgcattaatagcaatgtcaaaaa 3075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3114 agcgaaattggacaattacgctactaacagccacacacgcattaatagcaatgtcaaaaa 3173
Query: 3076 tggaacaatcaatgaaaaagcgatcggcatgctaacgcaaaaaaaccctgagtggctcaa 3135
||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 3174 tggaacaatcaatgaaaaagcgaccggcatgctaacgcaaaaaaattctgagtggctcaa 3233
Query: 3136 gcttgtgaatgataagatagttgcgcataatgtgggaagcgctcctttgtcaggttatga 3195
||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 3234 gctcgtgaatgataagatagttgcgcataatgtgggaagtgctcctttgtcagcgtatga 3293
Query: 3196 taaaattggattcaaccaaaagaatatgaaaggttattctgattcgttcaggttttccac 3255
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 3294 taaaattggattcaaccaaaagaatatgaaagattattctgattcgttcaagttttccac 3353
Query: 3256 caagttgagcaatgccgtaaaaaacattaagtctgactttaagcaacttttaaccgattg 3315
|| ||||||||||||||||||| |||||||||||| |||| |||| |||||||| ||
Sbjct: 3354 caggttgagcaatgccgtaaaagacattaagtctggctttgtgcaatttttaaccaatat 3413
Query: 3316 catttctgcaggaacttacagcccgaagaaagc------ggaacatggagttaaaaatat 3369
||||| ||| |||||||| || |||||| |||||||||||| |||||||
Sbjct: 3414 attttctatgggatcttacagcttgatgaaagcaagtgtggaacatggagtcaaaaatac 3473
Query: 3370 taatacaaaaagtggtttccagaaatcttaa 3400
|||||||||| |||||||||| |||||||||
Sbjct: 3474 taatacaaaaggtggtttccaaaaatcttaa 3504
Score = 387 bits (999), Expect = e-108
Identities = 208/229 (91%)
Strand = Plus / Plus
Query: 1032 attacaagttcaaccagttaccgattcacaataacgctctgtcttctatgctaatgggga 1091
|||||||||||||||| ||| ||| ||||||||||||||||||||| || |||||||||
Sbjct: 869 attacaagttcaaccaattattgatccacaataacgctctgtcttctgtgttaatgggga 928
Query: 1092 gtcatagcagcatagaacctgaaaaagtttcattgttgtatggggataatggtggtcctg 1151
|||||| |||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 929 gtcataatggcatagaacctgaaaaagtttcattgttgtatggaaacaatggtggtcctg 988
Query: 1152 aagctaggcatgattggaacgccaccgttggttataaaaaccaacaaggcaacaatgtgg 1211
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 989 aagctaggcatgattggaacgccaccgttggttataaaaaccaacgaggcgacaatgtgg 1048
Query: 1212 ccacactcatcaatgcgcatcttaaaaacggcagcgggttagtcatagc 1260
| |||||||| |||| |||| | ||||| ||||| ||||||||||||||
Sbjct: 1049 ctacactcattaatgtgcatatgaaaaatggcagtgggttagtcatagc 1097
Score = 382 bits (986), Expect = e-106
Identities = 213/241 (88%)
Strand = Plus / Plus
Query: 2766 atctcggcggatcttcccctttgaaaaggtatgctaaagttgatgatctcagtaaggtag 2825
||||||||||| ||| ||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 2873 atctcggcggacctttccctttgaaaaggcatgataaagttgatgatctcagtaaggtag 2932
Query: 2826 ggctttcaagggagcaagaattgaatgagaaaattggcaatctcaatcaggcagtgtcag 2885
||||||||||||||||| |||||| | ||||||||| ||||||||| ||||| || ||||
Sbjct: 2933 ggctttcaagggagcaaaaattgactcagaaaattgacaatctcaaccaggcggtatcag 2992
Query: 2886 aagctaaagcaggttcttttggcaacctagaacaaatgatggatggactcaaagattcta 2945
||||||||||| || ||||| ||||||||| |||||||| || |||||||||||||
Sbjct: 2993 aagctaaagcaagtcattttgacaacctagatcaaatgatagacaagctcaaagattcta 3052
Query: 2946 caaaaaagaatgttgtgaatctatggtttgaaggtgcaagaaaagtgcctattagtttgc 3005
|||||||||||||||||||||||| ||||| |||||| ||||||||||| |||||||
Sbjct: 3053 caaaaaagaatgttgtgaatctatatgttgaaagtgcaaaaaaagtgcctactagtttgt 3112
Query: 3006 c 3006
|
Sbjct: 3113 c 3113
Score = 339 bits (875), Expect = 2e-93
Identities = 189/209 (90%)
Strand = Plus / Plus
Query: 813 ctgttggggattggcttgatatttttttatcgtttgtatttaacaaagaacaatcttctg 872
||| ||||||||||||||||||||||||||| ||||| ||||||||| |||||||||| |
Sbjct: 620 ctggtggggattggcttgatatttttttatcatttgtgtttaacaaaaaacaatcttccg 679
Query: 873 atctcaaagaaacgctcaatcaagagccaaggcctcatgttgaacaaaatgtagcctcta 932
||||||||||||||||||||||||| ||| |||||||| ||| | |||||||| |||
Sbjct: 680 atctcaaagaaacgctcaatcaagaaccagttcctcatgtccaaccagatgtagccacta 739
Query: 933 cccccacccacatacaaggcttaccgcctgaagctagggatttgcttgatgaaaggggtg 992
|| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ccaccactgacatacaaagcttaccgcctgaagctagggatttgcttgatgaaaggggta 799
Query: 993 atttttctaaattcactcttggtgatatg 1021
|||||||||||||||||||||| ||||||
Sbjct: 800 atttttctaaattcactcttggcgatatg 828
Score = 117 bits (301), Expect = 2e-26
Identities = 67/74 (91%)
Strand = Plus / Plus
Query: 2692 tttgaaaaggtatgctaaagttgatgatctcagtaaggtagggcaatcagatagccctga 2751
|||||||||| ||| ||||||||||||||||||||||||||||| |||| || || |||
Sbjct: 2790 tttgaaaaggcatgataaagttgatgatctcagtaaggtagggctttcagctaaccatga 2849
Query: 2752 acccatttacgcta 2765
||||||||||||||
Sbjct: 2850 acccatttacgcta 2863
Score = 80 bits (207), Expect = 2e-15
Identities = 44/46 (96%)
Strand = Plus / Plus
Query: 767 gatgaatctttgaaagagaggcaagaagcacaaaacaatggagagc 812
|||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 559 gatgaatctttgaaagagaggcaagaagcagaaaaaaatggagagc 604
Score = 37 bits (94), Expect = 3e-02
Identities = 20/22 (91%)
Strand = Plus / Plus
Query: 2635 tcaaaaaaatgaaagtttcaat 2656
||||||||||||| |||||||
Sbjct: 2478 tcaaaaaaatgaagatttcaat 2499
Score = 17 bits (44), Expect = 2e+04
Identities = 9/9 (100%)
Strand = Plus / Plus
Query: 2064 aaaaatttg 2072
|||||||||
Sbjct: 1900 aaaaatttg 1908
Score = 10 bits (25), Expect = 3e+06
Identities = 5/5 (100%)
Strand = Plus / Plus
Query: 2685 cttcc 2689
|||||
Sbjct: 2784 cttcc 2788
|
