Homolog Viewer

PAthogenisity Island DataBase (PAI DB)

Home PAIs REIs Genomes Search Links

Homologs of hrpD gene of EF514224

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) Psyr_1196
( YP_234288.1 )

type III secretion protein HrpD

NC_007005
(Pseudomonas syringae B728a)

4e-53

2) hrpD
( YP_273535.1 )

type III secretion component protein HrpD

NC_005773
(Pseudomonas syringae 1448A)

4e-49

3) hrpD
( NP_791212.1 )

type III secretion protein HrpD

NC_004578
(Pseudomonas syringae DC3000)

7e-46

4) Pmen_0027
( YP_001185534.1 )

hypothetical protein

NC_009439
(Pseudomonas mendocina ymp)

6e-29

• Sequence Alignments

1) Psyr_1196 in NC_007005


> EF514224|27|G23|818897|AAB05081.1|Pseudomonas_syringae_pv._syringae_61|-|20497..20898|hrpD|-|HrpD
Length=133

 Score =  200 bits (743),  Expect = 4e-53, Method: Compositional matrix adjust.
 Identities = 124/133 (94%), Positives = 131/133 (99%), Gaps = 0/133 (0%)

Query  43   MVSRHGVFLQSVGIMPSQPPMPAEPVLNWLALTPAQRDQALDLAQRICFSRNESDGDDGQ  102
            MVSRH+VFLQS+GI PSQPPMPAEPVLNWLALTP QRDQALDLAQRICFSRNESDG+DGQ
Sbjct  1    MVSRHSVFLQSIGITPSQPPMPAEPVLNWLALTPVQRDQALDLAQRICFSRNESDGHDGQ  60

Query  103  WCWALTKALRPGVWLELEHEDARLLLGAWLGPEYWSRLRLAWAPDEVAERPCAAPENKLQ  162
            WCWALTKALRPGVWLELE+EDARLLLGAWLGPEYWSRLRLAWAPDEV++RPCAAPENKLQ
Sbjct  61   WCWALTKALRPGVWLELEREDARLLLGAWLGPEYWSRLRLAWAPDEVTDRPCAAPENKLQ  120

Query  163  TLWQAVLWRVTAA  175
            TLWQAVLWRVTA+
Sbjct  121  TLWQAVLWRVTAT  133

2) hrpD in NC_005773


> EF514224|27|G23|818897|AAB05081.1|Pseudomonas_syringae_pv._syringae_61|-|20497..20898|hrpD|-|HrpD
Length=133

 Score =  187 bits (692),  Expect = 4e-49, Method: Compositional matrix adjust.
 Identities = 112/133 (85%), Positives = 121/133 (91%), Gaps = 0/133 (0%)

Query  43   IASRHSVFLQSVGIEPDQPPMPAEPVLRWLALTPLQRERALDLARRICFCRNESDGADGQ  102
            + SRHSVFLQS+GI P QPPMPAEPVL WLALTP+QR++ALDLA+RICF RNESDG DGQ
Sbjct  1    MVSRHSVFLQSIGITPSQPPMPAEPVLNWLALTPVQRDQALDLAQRICFSRNESDGHDGQ  60

Query  103  WCWALTKALRPGVWLELANEDPRLLLGAWLGPEYWSRLRLAWAPDELPDSPCEAPENKLQ  162
            WCWALTKALRPGVWLEL  ED+RLLLGAWLGPEYWSRLRLAWAPDE+ D PC APENKLQ
Sbjct  61   WCWALTKALRPGVWLELEREDARLLLGAWLGPEYWSRLRLAWAPDEVTDRPCAAPENKLQ  120

Query  163  TLWQAILWRVTAV  175
            TLWQA+LWRVTA 
Sbjct  121  TLWQAVLWRVTAT  133

3) hrpD in NC_004578


> EF514224|27|G23|818897|AAB05081.1|Pseudomonas_syringae_pv._syringae_61|-|20497..20898|hrpD|-|HrpD
Length=133

 Score =  176 bits (651),  Expect = 7e-46, Method: Compositional matrix adjust.
 Identities = 105/133 (79%), Positives = 119/133 (90%), Gaps = 0/133 (0%)

Query  44   MASRHGVFLQSLGIDPAQPPAPAEPVLRWLALTPSQREQALSLAQCICFSRNESDGPDGQ  103
            M SRH+VFLQS+GI P+QPP PAEPVL WLALTP QR+QAL LAQ ICFSRNESDG DGQ
Sbjct  1    MVSRHSVFLQSIGITPSQPPMPAEPVLNWLALTPVQRDQALDLAQRICFSRNESDGHDGQ  60

Query  104  WCWGLTKALRPGVWLEFEHEDARLLLGAWLGPQYWSRLCLEWPPNEVPDTPGKAPENKLQ  163
            WCW+LTKALRPGVWLE+E+EDARLLLGAWLGP+YWSRL L W+P+EV D P  APENKLQ
Sbjct  61   WCWALTKALRPGVWLELEREDARLLLGAWLGPEYWSRLRLAWAPDEVTDRPCAAPENKLQ  120

Query  164  ALWQAIMWRVTAA  176
            +LWQA++WRVTA+
Sbjct  121  TLWQAVLWRVTAT  133

4) Pmen_0027 in NC_009439


> EF514224|27|G23|818897|AAB05081.1|Pseudomonas_syringae_pv._syringae_61|-|20497..20898|hrpD|-|HrpD
Length=133

 Score =  120 bits (437),  Expect = 6e-29, Method: Compositional matrix adjust.
 Identities = 69/131 (53%), Positives = 93/131 (71%), Gaps = 2/131 (1%)

Query  39   SRHAALAQSLGIGATQPPPPHEGVLQWLALNERQRQHALALAQHICSAKAPCQALPADAD  98
            SRH+ + QS+GI ++QPP P E VL+WLAL   QR++AL LAQ+IC ++   ++   D++
Sbjct  3    SRHSVFLQSIGITPSQPPMPAEPVLNWLALTPVQRDQALDLAQRICFSRNESDG--HDGQ  60

Query  99   WCRSLGKALRPGLWLTAEATDPRLLLGAWAGPACWERLRLQWAPGSLEELPPDLPARRLA  158
            WC++L KALRPG+WL  E  D+RLLLGAW GP  W RLRL WAP+ + + P   P  +L 
Sbjct  61   WCWALTKALRPGVWLELEREDARLLLGAWLGPEYWSRLRLAWAPDEVTDRPCAAPENKLQ  120

Query  159  TLWAAVLWRTS  169
            TLW AVLWR +
Sbjct  121  TLWQAVLWRVT  131