Homolog Viewer

PAthogenisity Island DataBase (PAI DB)

Home PAIs REIs Genomes Search Links

Homologs of hrpE gene of AF232004

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) hrpE
( NP_791213.1 )

type III secretion protein HrpE

NC_004578
(Pseudomonas syringae DC3000)

2e-67

2) HrpE
( YP_234289.1 )

type III secretion protein HrpE

NC_007005
(Pseudomonas syringae B728a)

3e-60

3) hrpE
( YP_273536.1 )

type III secretion component protein HrpE

NC_005773
(Pseudomonas syringae 1448A)

3e-50

4) Pmen_0026
( YP_001185533.1 )

HrpE/YscL family type III secretion apparatus protein

NC_009439
(Pseudomonas mendocina ymp)

6e-24

• Sequence Alignments

1) hrpE in NC_004578


> AF232004|27|G26|790912|AAB00131.1|Pseudomonas_syringae_pv._tomato_DC3000|-|25808..26389|hrpE|-|HrpE
Length=193

 Score =  247 bits (924),  Expect = 2e-67, Method: Compositional matrix adjust.
 Identities = 192/193 (99%), Positives = 193/193 (100%), Gaps = 0/193 (0%)

Query  1    MLAKRSIALTAATLLREPILRREDIADSLLARDILADARQQATQILALEQEKAEHLQQQA  60
            MLAKRSIALTAATLLREPILRREDIADSLLARDILADARQQATQILALEQEKAEHLQQQA
Sbjct  1    MLAKRSIALTAATLLREPILRREDIADSLLARDILADARQQATQILALEQEKAEHLQQQA  60

Query  61   LAQFWENANAFLGELQVQREALQEQAMTAVeellseslRHLLDDTTlaeraralarnlaa  120
            LAQFWENANAFLGELQVQREALQEQAMTAVEELLSESLRHLLDDTTLAERARALARNLAA
Sbjct  61   LAQFWENANAFLGELQVQREALQEQAMTAVEELLSESLRHLLDDTTLAERARALARNLAA  120

Query  121  SQLNEAVATLSVHPQIADAVAEWLADSRFSEHWQLKRDATIASDSLRLSDANGAFDIAWA  180
            SQLNEAVATLSVHPQIAD+VAEWLADSRFSEHWQLKRDATIASDSLRLSDANGAFDIAWA
Sbjct  121  SQLNEAVATLSVHPQIADPVAEWLADSRFSEHWQLKRDATIASDSLRLSDANGAFDIAWA  180

Query  181  DLRKGLLGVEPAA  193
            DLRKGLLGVEPAA
Sbjct  181  DLRKGLLGVEPAA  193

2) HrpE in NC_007005


> AF232004|27|G26|790912|AAB00131.1|Pseudomonas_syringae_pv._tomato_DC3000|-|25808..26389|hrpE|-|HrpE
Length=193

 Score =  224 bits (834),  Expect = 3e-60, Method: Compositional matrix adjust.
 Identities = 148/193 (77%), Positives = 178/193 (93%), Gaps = 0/193 (0%)

Query  1    MLAKRSITLTADAVLPEPVLRREYIANSLLARDILTDAQRQAEQMLVLEQAKADRRHQEA  60
            MLAKRSI+LTA ++L EP+LRRE IA+SLLARDIL+DA++QA Q+L LEQ KA++ +Q+A
Sbjct  1    MLAKRSIALTAATLLREPILRREDIADSLLARDILADARQQATQILALEQEKAEHLQQQA  60

Query  61   LAQFWERANAFLDELHVQREALQQQAMTAVEELLTEALSQLLDETTLAERARALVRNLAA  120
            LAQFWE ANAFL+EL+VQREALQ+QAMTAVEELL+E+L +LLD+TTLAERARAL RNLAA
Sbjct  61   LAQFWENANAFLGELQVQREALQEQAMTAVEELLSESLRHLLDDTTLAERARALARNLAA  120

Query  121  SQLNEAVATLSVHPEMAEPVAEWLAESRFAEHWALKRDATLATESLRLSDANGAFEIDWA  180
            SQLNEAVATLSVHP++A+PVAEWLA+SRF+EHW LKRDAT+A++SLRLSDANGAF+I WA
Sbjct  121  SQLNEAVATLSVHPQIADPVAEWLADSRFSEHWQLKRDATIASDSLRLSDANGAFDIAWA  180

Query  181  TLRNGLAGAEPAA  193
             LR+GL G EPAA
Sbjct  181  DLRKGLLGVEPAA  193

3) hrpE in NC_005773


> AF232004|27|G26|790912|AAB00131.1|Pseudomonas_syringae_pv._tomato_DC3000|-|25808..26389|hrpE|-|HrpE
Length=193

 Score =  190 bits (706),  Expect = 3e-50, Method: Compositional matrix adjust.
 Identities = 149/193 (78%), Positives = 180/193 (94%), Gaps = 0/193 (0%)

Query  1    MLAKRSITLTATALLPEPVLRREDIANSLLARDVLADAQRQAEQMLVLEQQKADLVHQQA  60
            MLAKRSI+LTA++LL EP+LRREDIA+SLLARD+LADA++QA Q+L LEQ+KA+ ++QQA
Sbjct  1    MLAKRSIALTAATLLREPILRREDIADSLLARDILADARQQATQILALEQEKAEHLQQQA  60

Query  61   LASFWENANAFLaelqvqrevlqqqaMAAVeellseslRHLLDDTTLAERARALVKNLAA  120
            LA FWENANAFL+ELQVQRE LQ+QAM+AVEELLSESLRHLLDDTTLAERARAL +NLAA
Sbjct  61   LAQFWENANAFLGELQVQREALQEQAMTAVEELLSESLRHLLDDTTLAERARALARNLAA  120

Query  121  SQLNEAVATLSVHPDMAEPVAEWLADSRFAQYWQLKRDASLTTERLRLSDANGAFDIDWA  180
            SQLNEAVATLSVHP++A+PVAEWLADSRF++ WQLKRDA+++++ LRLSDANGAFDI WA
Sbjct  121  SQLNEAVATLSVHPQIADPVAEWLADSRFSEHWQLKRDATIASDSLRLSDANGAFDIAWA  180

Query  181  TLRNGLAGRDSSA  193
             LR+GL G +++A
Sbjct  181  DLRKGLLGVEPAA  193

4) Pmen_0026 in NC_009439


> AF232004|27|G26|790912|AAB00131.1|Pseudomonas_syringae_pv._tomato_DC3000|-|25808..26389|hrpE|-|HrpE
Length=193

 Score =  103 bits (374),  Expect = 6e-24, Method: Compositional matrix adjust.
 Identities = 83/193 (44%), Positives = 136/193 (71%), Gaps = 1/193 (0%)

Query  1    MLTKRRFTL-GSAVLEEPILRRQLLAESlradellaqarlqaeqllqqaheqrqHYLDEA  59
            ML+KR ++L ++++L EPILRR+ +A+SL A ++LA+AR QA Q+L   +E+ +H  ++A
Sbjct  1    MLAKRSIALTAATLLREPILRREDIADSLLARDILADARQQATQILALEQEKAEHLQQQA  60

Query  60   VARFWSEANALLQAIQEERASYQRDALSAVDSLLNIALSRLLDETDLPQRISALLRNLVV  119
            +A+FW +ANA+L  +Q +R + Q +A++AV+ LL+ +L +LLD+T L++R  AL RNL  
Sbjct  61   LAQFWENANAFLGELQVQREALQEQAMTAVEELLSESLRHLLDDTTLAERARALARNLAA  120

Query  120  GLPSKAEANLACHPEAASTVRAWLQTMGFDALWQVQEDPGMAPESLRLSNTLGTFHIDWP  179
            +  + A A L+ HP+ A  V  WL    F   WQ++ D+ +A++SLRLS++ G+F+I W+
Sbjct  121  SQLNEAVATLSVHPQIADPVAEWLADSRFSEHWQLKRDATIASDSLRLSDANGAFDIAWA  180

Query  180  SLRRGLIPSLPEA  192
             LR+GL+   P A
Sbjct  181  DLRKGLLGVEPAA  193