>NC_017367_P1|25|G25|385249069|YP_005777288.1|Helicobacter_pylori_F57|+|32656..36168|cagA|HPF57_0574|cag
Length = 3513
Score = 2510 bits (6478), Expect = 0.0
Identities = 1388/1518 (91%)
Strand = Plus / Plus
Query: 1034 tacaagttcaaccagttaccgattcacaataacgctctgtcttctatgctaatggggagt 1093
||||||||||| || ||| ||| |||||||||||||| |||||| ||||||||||| ||
Sbjct: 856 tacaagttcaatcaattattgatccacaataacgctctatcttctgtgctaatggggggt 915
Query: 1094 catagcagcatagaacctgaaaaagtttcattgttgtatggggataatggtggtcctgaa 1153
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 916 catagcagcatagaacctgaaaaagtttcattattgtatggagataatggtggtcctgaa 975
Query: 1154 gctaggcatgattggaacgccaccgttggttataaaaaccaacaaggcaacaatgtggcc 1213
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 976 gctaggcatgattggaacgccaccgttggttataaaaaccaacaaggcagtaatgtggcc 1035
Query: 1214 acactcatcaatgcgcatcttaaaaacggcagcgggttagtcatagcgggtaatggaaat 1273
|||||||| ||||| || ||||| ||||||||||||||| ||||||||||||||| ||||
Sbjct: 1036 acactcattaatgcacaccttaataacggcagcgggttaatcatagcgggtaatgaaaat 1095
Query: 1274 gggattaacaaccctagcttctatctctacaaaacagaccaactcacaggcttggaacaa 1333
|||||||| |||||||||||||||||||| ||| ||| ||||||||||||||| |||||
Sbjct: 1096 gggattaaaaaccctagcttctatctctataaagaagatcaactcacaggcttgaaacaa 1155
Query: 1334 gcgttgagtcaagaagagatccaaaacaaagtggatttcatggaacttcttgcacaaaac 1393
||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||
Sbjct: 1156 gcgttgagtcaagaagagatccaaaacaaagtggatttcatggaatttctcgcgcaaaac 1215
Query: 1394 aacgctagattagataacttgagcgaggaagagaaagaaaagttccaaactgagattgga 1453
||||||| ||||||||||||||||||| ||||||| ||||| |||||| ||||||||| |
Sbjct: 1216 aacgctaaattagataacttgagcgagaaagagaaggaaaaattccaagctgagattgaa 1275
Query: 1454 aatttccaaaaagaccctaaggcttatttagactccctagggaatgatcgcattgctttt 1513
|||||||||||||||| |||||||||||| ||| ||||||||||||||| ||||||||||
Sbjct: 1276 aatttccaaaaagaccgtaaggcttatttggacgccctagggaatgatcacattgctttt 1335
Query: 1514 gtttctaaaaaagacc-aaaagcatttagctttggttactgagtttggtaatggggaatt 1572
|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 1336 gtttctaaaaaagacccaaaa-catttagctttggttactgagtttggtaatggggaagt 1394
Query: 1573 gagctatactctcaaagattatgggaaaaaacaagatagagctttagatagggagacaaa 1632
||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 1395 gagctataccctcaaagattatgggaaaaaacaagataaagctttagatggggagacaaa 1454
Query: 1633 aaccactcttcaaggtaacctaaagcatgatggcgtgatgtttgtcaattattccaattt 1692
||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||
Sbjct: 1455 aaccactcttcaaggtagcctaaaatatgatggcctgatgtttgtcaattattccaattt 1514
Query: 1693 caaatacaccaacgcctccaagagtcctgatgagggtataggcgctacgaatggcgtttc 1752
||||||||||||||| ||||||||||||||| |||| | ||||||||||||||||||||
Sbjct: 1515 caaatacaccaacgcttccaagagtcctgataagggcgtgggcgctacgaatggcgtttc 1574
Query: 1753 ccatttggaagcaaattttagcaaggtggctgtctttaatttgcctgatttaaatggtct 1812
|||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||
Sbjct: 1575 gcatttggaagcaaattttagcaaggtagctgtctttaatttgcctaatttaaataatct 1634
Query: 1813 cgctatctctagttttgcaaggcggaatttagaggataaactgatcgctaaaggattgcc 1872
||||||| ||| || | |||||| ||||||| |||||| || |||||||||||| |
Sbjct: 1635 cgctatcactaattatataaggcgagatttagaagataaattgtgggctaaaggattgtc 1694
Query: 1873 cccaaaagacgctaataagatcatcaaagactttttgaacagcaacaaggaattgcttga 1932
| || |||| ||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 1695 ctcacaagaagctaataagctcatcaaagactttttgaacagcaacaaagaattgcttgg 1754
Query: 1933 aaaagctttagacttcaataaagctgtagctgaagctaaaaatacaggcaattatgacgg 1992
||||| || | ||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 1755 aaaagtttcaaacttcaataaagctgtagctgaagctaaaaacacaggcaattatgatga 1814
Query: 1993 agtgaaaaaagctcaaaaagatcttgaaaaatctataaggaaacgagagcgtttagagca 2052
||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||| |
Sbjct: 1815 agtgaaaaaagctcagaaagatcttgaaaaatctctaaggaaacgagagcatttagagaa 1874
Query: 2053 agaaataacgaaaaaatttgagaacaagagcggcaacaaaaataaaatggaagcgaaagt 2112
|||| || |||||||||| |||| || | || ||||||||||| ||||||||| ||||
Sbjct: 1875 agaagtagcgaaaaaattggagagcagaaacgacaacaaaaatagaatggaagcaaaagc 1934
Query: 2113 tcaagctaacagccaaaaagatgggatttttaagcttatcaatgaagaggctcataagga 2172
|||||||||||||||||||||| ||||||| ||||||||| |||||||| ||||||
Sbjct: 1935 tcaagctaacagccaaaaagataagatttttgcacttatcaatcaagaggctagtaagga 1994
Query: 2173 agcaagaatcgccgcttacgctcagaatcttaaaggcatcaggagggaattgtttgataa 2232
||||||| ||||||| || || ||||||||||||||||||||| ||||||| ||||||
Sbjct: 1995 agcaagagcggccgctttcgatccgaatcttaaaggcatcaggagcgaattgtctgataa 2054
Query: 2233 agttaaaaatctcaacaagaatttgaaagactttgataaatcttttgatgcgctcaaaag 2292
| || ||||| |||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 2055 acttgaaaatatcaacaagaatttgaaagactttggcaaatcttttgatgaactcaaaag 2114
Query: 2293 tggcaaaaataaggatttcagcaaggcagaagaaacgctaaaagcccttgaaag-ctcgg 2351
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 2115 tggcaaaaataaggatttcagcaaggcagaagaaacgctaaaagccctt-aaagactcgg 2173
Query: 2352 tgaaagatttgggtatcaatccagaatggatttcaaaagttgaaaaccttaatgcagctt 2411
|||||||||| || |||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 2174 tgaaagatttaggcatcaatccagaatggatttcaaaaattgaaaaccttaatacagctt 2233
Query: 2412 tgaatgaattcaaaaatggcaaaaataaggatttcagcaaggtaacacaagcaaaaagcg 2471
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2234 tgaatgatttcaaaaatggcaaaaataaggatttcagcaaggtaacacaagcaaaaagcg 2293
Query: 2472 accttgaaaattccattaaggatgtgctcatcaatcaagagataacggataaagttgaca 2531
|||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||
Sbjct: 2294 accttgaaaattccattaaggatgtgatcattaatcaaaagataacggataaagttgaca 2353
Query: 2532 atctcaatcaggctgtat 2549
||||||||||||||||||
Sbjct: 2354 atctcaatcaggctgtat 2371
Score = 907 bits (2340), Expect = e-264
Identities = 494/537 (92%)
Strand = Plus / Plus
Query: 37 gatcaaacaccaagccaaacggcttttaatccacaacaatttatcaataatcttcaagtg 96
||||||||||||| |||||||| |||| ||| |||| |||||||||||||||||||||
Sbjct: 19 gatcaaacaccaaaccaaacggattttgttccgcaacgatttatcaataatcttcaagta 78
Query: 97 gcttttattaaacttgatagtgctgtcgcttcatttgatcccgatcaaaaaccaatcgtt 156
|||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 79 gcttttattaaagttgataacgctgtcgcttcatttgatcctgatcaaaaaccaatcgtt 138
Query: 157 gataagaacgatagggataacaggcaagcttttaatgtaatctcgcaattaagggaagaa 216
|||||||| |||||||||||||||||||||||| | |||||||||| |||||||||||
Sbjct: 139 gataagaatgatagggataacaggcaagcttttgagagaatctcgcaactaagggaagaa 198
Query: 217 tacgccaataaagcgatcaaaaatcccaccaaaaagaatcagtatttttcagactttatc 276
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 199 tacgccaataaagcgattaaaaatcctgccaaaaagaatcagtatttttcagactttatc 258
Query: 277 gataaaagcaatgatttgatcaacaaaaacgatctcattgatacagattcttccacaaag 336
|||| ||||||||||||||||||||| || ||||||||| | |||||||||| | ||
Sbjct: 259 aataagagcaatgatttgatcaacaaagacaatctcattgctgtagattcttccgtagag 318
Query: 337 agctttgaaaaatttggggctcagcgttaccaaatttttatgaattgggtgtcccatcaa 396
|||||| |||||||||| |||||||||||||||||||| || ||||||||||| ||||
Sbjct: 319 agctttcggaaatttggggatcagcgttaccaaatttttacgagttgggtgtcccttcaa 378
Query: 397 aaagatccgtctaaaatcaacacccaaaaaatccgagattttatggaaaatatcatacaa 456
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 379 aaagatccgtctaaaatcaacacccaacaaatccgaaattttatggaaaatatcatacaa 438
Query: 457 ccccctatctctgatgataaagaaaaagcggagtttttgaggtctgccaaacaatctttt 516
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ccccctatctctgatgataaggaaaaagcggagtttttgaggtctgccaaacaatctttt 498
Query: 517 gcaggaattatcatagggaaccaaacccgatcggatgaaaaattcatgggcgttttt 573
|||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||
Sbjct: 499 gcaggaattatcatagggaatcaaatccgatcggatgaaaaattcatgggcgtgttt 555
Score = 549 bits (1415), Expect = e-156
Identities = 300/325 (92%)
Strand = Plus / Plus
Query: 3013 gcaagcgaaattggacaattacgctactaacagccacacacgcattaatagcaatgtcaa 3072
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 3123 gcaagcgaaattggacaattacgctactaacagccacacacgcattaatagcaatgtcca 3182
Query: 3073 aaatggaacaatcaatgaaaaagcgatcggcatgctaacgcaaaaaaaccctgagtggct 3132
|| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 3183 aagtggaacaatcaatgaaaaagcgaccggtatgctaacgcaaaaaaaccctgagtggct 3242
Query: 3133 caagcttgtgaatgataagatagttgcgcataatgtgggaagcgctcctttgtcaggtta 3192
|||||| ||||||||||||||||||||||||||||||||||| |||| |||||||| ||
Sbjct: 3243 caagctcgtgaatgataagatagttgcgcataatgtgggaagtgctcatttgtcagagta 3302
Query: 3193 tgataaaattggattcaaccaaaagaatatgaaaggttattctgattcgttcaggttttc 3252
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 3303 tgataaaattggattcaaccaaaagaatatgaaagattattctgattcgttcaagttttc 3362
Query: 3253 caccaagttgagcaatgccgtaaaaaacattaagtctgactttaagcaacttttaaccga 3312
||||||||||| ||||||||||||| ||||||||||| |||| |||| |||||||| |
Sbjct: 3363 caccaagttgaacaatgccgtaaaagacattaagtctagctttgtgcaatttttaaccaa 3422
Query: 3313 ttgcatttctgcaggaacttacagc 3337
| ||||| ||||| ||||||||
Sbjct: 3423 tacattttctacaggatcttacagc 3447
Score = 364 bits (938), Expect = 1e-100
Identities = 200/217 (92%)
Strand = Plus / Plus
Query: 817 tggggattggcttgatatttttttatcgtttgtatttaacaaagaacaatcttctgatct 876
||||||||||||||||||||||||||| |||||||| |||||| |||||||||| |||||
Sbjct: 609 tggggattggcttgatatttttttatcatttgtattcaacaaaaaacaatcttccgatct 668
Query: 877 caaagaaacgctcaatcaagagccaaggcctcatgttgaacaaaatgtagcctctacccc 936
||||||||||||||||||||||||||||||| || ||||||||||| || || ||||| |
Sbjct: 669 caaagaaacgctcaatcaagagccaaggcctgattttgaacaaaatttatccactaccac 728
Query: 937 cacccacatacaaggcttaccgcctgaagctagggatttgcttgatgaaaggggtgattt 996
||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 729 taccgacatacaaggcttaccgcctgaagctagagatttgcttgatgaaaggggtaattt 788
Query: 997 ttctaaattcactcttggtgatatggaaatgttggat 1033
|| ||||||||||||||||||| |||| |||||||||
Sbjct: 789 ttttaaattcactcttggtgatgtggagatgttggat 825
Score = 240 bits (621), Expect = 1e-63
Identities = 135/153 (88%)
Strand = Plus / Plus
Query: 2805 ttgatgatctcagtaaggtagggctttcaagggagcaagaattgaatgagaaaattggca 2864
|||||||||||||||| ||||||||||||||||| |||||||||| | | |||||||
Sbjct: 2924 ttgatgatctcagtaaagtagggctttcaagggaacaagaattgactcgtagaattggcg 2983
Query: 2865 atctcaatcaggcagtgtcagaagctaaagcaggttcttttggcaacctagaacaaatga 2924
||||||||||||| || |||||||||||| ||||| ||||| |||||||||||||| ||
Sbjct: 2984 atctcaatcaggcggtatcagaagctaaaacaggtcgttttgacaacctagaacaaaaga 3043
Query: 2925 tggatggactcaaagattctacaaaaaagaatg 2957
| |||| ||||||||||||||| ||||||||||
Sbjct: 3044 tagatgaactcaaagattctacgaaaaagaatg 3076
Score = 54 bits (139), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 3373 tacaaaaagtggtttccagaaatcttaa 3400
||||||||||||||||||||||||||||
Sbjct: 3486 tacaaaaagtggtttccagaaatcttaa 3513
Score = 52 bits (135), Expect = 5e-07
Identities = 28/29 (97%)
Strand = Plus / Plus
Query: 2737 atcagatagccctgaacccatttacgcta 2765
||||| |||||||||||||||||||||||
Sbjct: 2838 atcagctagccctgaacccatttacgcta 2866
Score = 47 bits (121), Expect = 2e-05
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 785 aggcaagaagcacaaaacaatggagagcctg 815
|||||||||||| |||| |||| ||||||||
Sbjct: 574 aggcaagaagcagaaaaaaatgcagagcctg 604
Score = 40 bits (103), Expect = 3e-03
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 3347 gcggaacatggagttaaaaata 3368
|||||||||||||| |||||||
Sbjct: 3463 gcggaacatggagtcaaaaata 3484
Score = 29 bits (74), Expect = 7e+00
Identities = 15/16 (94%)
Strand = Plus / Plus
Query: 2721 tcagtaaggtagggca 2736
|||||||||||| |||
Sbjct: 2396 tcagtaaggtagagca 2411
Score = 28 bits (73), Expect = 9e+00
Identities = 15/16 (94%)
Strand = Plus / Plus
Query: 2988 aagtgcctattagttt 3003
||||||||| ||||||
Sbjct: 3107 aagtgcctactagttt 3122
Score = 25 bits (63), Expect = 1e+02
Identities = 13/14 (93%)
Strand = Plus / Plus
Query: 1 atggctaacgaaac 14
||| ||||||||||
Sbjct: 1 atgactaacgaaac 14
Score = 23 bits (60), Expect = 3e+02
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 683 gatgaatctttg 694
||||||||||||
Sbjct: 556 gatgaatctttg 567
Score = 16 bits (40), Expect = 6e+04
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 2782 ccctttga 2789
||||||||
Sbjct: 2901 ccctttga 2908
Score = 13 bits (35), Expect = 3e+05
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2972 tttgaag 2978
|||||||
Sbjct: 3078 tttgaag 3084 |