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PAthogenisity Island DataBase (PAI DB)

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Homologs of atlA gene of AY803022

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) APECO1_3886
( YP_853783.1 )

muramidase

NC_008563
(Escherichia coli APEC O1)

1e-10

2) ECOK1_3001
( YP_006102131.1 )

phage lysozyme

NC_017628
(Escherichia coli IHE3034)

1e-10

3) ECOPMV1_02887
( YP_008572679.1 )

Phage lysozyme

NC_022370
(Escherichia coli PMV-1)

1e-10

4) r
( YP_002392535.1 )

Lysozyme (Lysis protein) (Muramidase) (Endolysin)

NC_011742
(Escherichia coli S88)

1e-10

5) UM146_03420
( YP_006109610.1 )

Lysozyme (Lysis protein) (Muramidase) (Endolysin)

NC_017632
(Escherichia coli UM146)

1e-10

6) UTI89_C2990
( YP_541977.1 )

endolysin of prophage CP-933X

NC_007946
(Escherichia coli UTI89)

1e-10

• Sequence Alignments

1) APECO1_3886 in NC_008563


> AY803022|25|G25|58891393|AAW83081.1|Neisseria_gonorrhoeae_MS11|+|27049..27594|atlA|-|AtlA
Length=181

 Score = 59.5 bits (206),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 54/133 (41%), Positives = 77/133 (58%), Gaps = 15/133 (11%)

Query  5    NPQRKAFLDMVAWSEGTDNGLQPTRNHGYDVIVGGEIFTDYSDHP----RRLVTLN--PK  58
            NPQ +AFLD +A SEG         +HGY+  +G   +TD+S HP    RR  T    ++
Sbjct  34   NPQVRAFLDFIAASEGV--------KHGYQTAIGNYRITDFSRHPGNSVRRSFTRTDGSR  85

Query  59   LKSTAAGRYQLLSRWWDAYRKQLGLKDFSPKSQDAVALQQI-KERGALPMIDRGDIRQAI  117
              S A+GRYQ+++  W +  KQ G+ DFSP +QD  A+  I   +GA+  I  GD  QA+
Sbjct  86   STSDASGRYQFMGYTWKGLAKQYGFTDFSPATQDKAAVALILAKKGAMEAILNGDYEQAV  145

Query  118  DRCSNIWASLPGA  130
             + + IWAS+P A
Sbjct  146  MKLGGIWASFPTA  158

2) ECOK1_3001 in NC_017628


> AY803022|25|G25|58891393|AAW83081.1|Neisseria_gonorrhoeae_MS11|+|27049..27594|atlA|-|AtlA
Length=181

 Score = 59.5 bits (206),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 54/133 (41%), Positives = 77/133 (58%), Gaps = 15/133 (11%)

Query  5    NPQRKAFLDMVAWSEGTDNGLQPTRNHGYDVIVGGEIFTDYSDHP----RRLVTLN--PK  58
            NPQ +AFLD +A SEG         +HGY+  +G   +TD+S HP    RR  T    ++
Sbjct  34   NPQVRAFLDFIAASEGV--------KHGYQTAIGNYRITDFSRHPGNSVRRSFTRTDGSR  85

Query  59   LKSTAAGRYQLLSRWWDAYRKQLGLKDFSPKSQDAVALQQI-KERGALPMIDRGDIRQAI  117
              S A+GRYQ+++  W +  KQ G+ DFSP +QD  A+  I   +GA+  I  GD  QA+
Sbjct  86   STSDASGRYQFMGYTWKGLAKQYGFTDFSPATQDKAAVALILAKKGAMEAILNGDYEQAV  145

Query  118  DRCSNIWASLPGA  130
             + + IWAS+P A
Sbjct  146  MKLGGIWASFPTA  158

3) ECOPMV1_02887 in NC_022370


> AY803022|25|G25|58891393|AAW83081.1|Neisseria_gonorrhoeae_MS11|+|27049..27594|atlA|-|AtlA
Length=181

 Score = 59.5 bits (206),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 54/133 (41%), Positives = 77/133 (58%), Gaps = 15/133 (11%)

Query  5    NPQRKAFLDMVAWSEGTDNGLQPTRNHGYDVIVGGEIFTDYSDHP----RRLVTLN--PK  58
            NPQ +AFLD +A SEG         +HGY+  +G   +TD+S HP    RR  T    ++
Sbjct  34   NPQVRAFLDFIAASEGV--------KHGYQTAIGNYRITDFSRHPGNSVRRSFTRTDGSR  85

Query  59   LKSTAAGRYQLLSRWWDAYRKQLGLKDFSPKSQDAVALQQI-KERGALPMIDRGDIRQAI  117
              S A+GRYQ+++  W +  KQ G+ DFSP +QD  A+  I   +GA+  I  GD  QA+
Sbjct  86   STSDASGRYQFMGYTWKGLAKQYGFTDFSPATQDKAAVALILAKKGAMEAILNGDYEQAV  145

Query  118  DRCSNIWASLPGA  130
             + + IWAS+P A
Sbjct  146  MKLGGIWASFPTA  158

4) r in NC_011742


> AY803022|25|G25|58891393|AAW83081.1|Neisseria_gonorrhoeae_MS11|+|27049..27594|atlA|-|AtlA
Length=181

 Score = 59.5 bits (206),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 54/133 (41%), Positives = 77/133 (58%), Gaps = 15/133 (11%)

Query  5    NPQRKAFLDMVAWSEGTDNGLQPTRNHGYDVIVGGEIFTDYSDHP----RRLVTLN--PK  58
            NPQ +AFLD +A SEG         +HGY+  +G   +TD+S HP    RR  T    ++
Sbjct  34   NPQVRAFLDFIAASEGV--------KHGYQTAIGNYRITDFSRHPGNSVRRSFTRTDGSR  85

Query  59   LKSTAAGRYQLLSRWWDAYRKQLGLKDFSPKSQDAVALQQI-KERGALPMIDRGDIRQAI  117
              S A+GRYQ+++  W +  KQ G+ DFSP +QD  A+  I   +GA+  I  GD  QA+
Sbjct  86   STSDASGRYQFMGYTWKGLAKQYGFTDFSPATQDKAAVALILAKKGAMEAILNGDYEQAV  145

Query  118  DRCSNIWASLPGA  130
             + + IWAS+P A
Sbjct  146  MKLGGIWASFPTA  158

5) UM146_03420 in NC_017632


> AY803022|25|G25|58891393|AAW83081.1|Neisseria_gonorrhoeae_MS11|+|27049..27594|atlA|-|AtlA
Length=181

 Score = 59.5 bits (206),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 54/133 (41%), Positives = 77/133 (58%), Gaps = 15/133 (11%)

Query  5    NPQRKAFLDMVAWSEGTDNGLQPTRNHGYDVIVGGEIFTDYSDHP----RRLVTLN--PK  58
            NPQ +AFLD +A SEG         +HGY+  +G   +TD+S HP    RR  T    ++
Sbjct  34   NPQVRAFLDFIAASEGV--------KHGYQTAIGNYRITDFSRHPGNSVRRSFTRTDGSR  85

Query  59   LKSTAAGRYQLLSRWWDAYRKQLGLKDFSPKSQDAVALQQI-KERGALPMIDRGDIRQAI  117
              S A+GRYQ+++  W +  KQ G+ DFSP +QD  A+  I   +GA+  I  GD  QA+
Sbjct  86   STSDASGRYQFMGYTWKGLAKQYGFTDFSPATQDKAAVALILAKKGAMEAILNGDYEQAV  145

Query  118  DRCSNIWASLPGA  130
             + + IWAS+P A
Sbjct  146  MKLGGIWASFPTA  158

6) UTI89_C2990 in NC_007946


> AY803022|25|G25|58891393|AAW83081.1|Neisseria_gonorrhoeae_MS11|+|27049..27594|atlA|-|AtlA
Length=181

 Score = 59.5 bits (206),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 54/133 (41%), Positives = 77/133 (58%), Gaps = 15/133 (11%)

Query  5    NPQRKAFLDMVAWSEGTDNGLQPTRNHGYDVIVGGEIFTDYSDHP----RRLVTLN--PK  58
            NPQ +AFLD +A SEG         +HGY+  +G   +TD+S HP    RR  T    ++
Sbjct  34   NPQVRAFLDFIAASEGV--------KHGYQTAIGNYRITDFSRHPGNSVRRSFTRTDGSR  85

Query  59   LKSTAAGRYQLLSRWWDAYRKQLGLKDFSPKSQDAVALQQI-KERGALPMIDRGDIRQAI  117
              S A+GRYQ+++  W +  KQ G+ DFSP +QD  A+  I   +GA+  I  GD  QA+
Sbjct  86   STSDASGRYQFMGYTWKGLAKQYGFTDFSPATQDKAAVALILAKKGAMEAILNGDYEQAV  145

Query  118  DRCSNIWASLPGA  130
             + + IWAS+P A
Sbjct  146  MKLGGIWASFPTA  158