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Homologs of sip gene of AY220730

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) SAOV_0414c
( YP_005735930.1 )

integrase

NC_017337
(Staphylococcus aureus ED133)

5e-146

2) SAB0342c
( YP_415844.1 )

integrase

NC_007622
(Staphylococcus aureus RF122)

5e-146

3) C248_0448
( YP_006709209.1 )

Integrase

NC_018608
(Staphylococcus aureus 08BA02176)

8e-146

4) SAPIG0469
( YP_005733279.1 )

integrase

NC_017333
(Staphylococcus aureus ST398)

8e-146

5) EHR_02815
( YP_006486430.1 )

integrase

NC_018081
(Enterococcus hirae ATCC 9790)

5e-87

6) ydcL
( YP_004374594.1 )

putative phage integrase

NC_015391
(Carnobacterium sp. 17-4)

3e-84

7) Bsph_0482
( YP_001696237.1 )

prophage Lp3 protein 1, integrase

NC_010382
(Lysinibacillus sphaericus C3-41)

4e-74

8) Lbuc_0020
( YP_004397374.1 )

integrase family protein

NC_015428
(Lactobacillus buchneri NRRL B-30929)

2e-72

9) EFS1_1546
( YP_007153338.1 )

integrase

NC_019770
(Enterococcus faecalis Symbioflor 1)

3e-72

10) SSUA7_1364
( YP_006085026.1 )

putative phage integrase

NC_017622
(Streptococcus suis A7)

2e-66

11) SSGZ1_1364
( YP_006074762.1 )

integrase

NC_017617
(Streptococcus suis GZ1)

2e-66

12) SSUJS14_1499
( YP_006076830.1 )

putative phage integrase

NC_017618
(Streptococcus suis JS14)

2e-66

13) SSU1347
( YP_003027195.1 )

phage integrase

NC_012925
(Streptococcus suis P1/7)

2e-66

14) NJAUSS_1413
( YP_007571356.1 )

integrase

NC_020526
(Streptococcus suis SC070731)

2e-66

15) SSUSC84_1377
( YP_003025369.1 )

phage integrase

NC_012924
(Streptococcus suis SC84)

2e-66

16) SSU12_1416
( YP_006078843.1 )

putative phage integrase

NC_017619
(Streptococcus suis SS12)

2e-66

17) SSUBM407_1424
( YP_003029128.1 )

phage integrase

NC_012926
(Streptococcus suis BM407)

5e-66

18) SPPN_05300
( YP_004768356.1 )

integrase

NC_015875
(Streptococcus pseudopneumoniae IS7493)

2e-64

19) LVISKB_0737
( YP_007653577.1 )

ICEBs1 integrase

NC_020819
(Lactobacillus brevis KB290)

4e-64

20) JDM1_0030
( YP_003061616.1 )

prophage Lp3 protein 1, integrase

NC_012984
(Lactobacillus plantarum JDM1)

7e-64

21) lp_3390
( YP_004890889.1 )

prophage P3 protein 1, integrase

NC_004567
(Lactobacillus plantarum WCFS1)

3e-63

22) EHR_00880
( YP_006486061.1 )

prophage Lp3 protein 1, integrase

NC_018081
(Enterococcus hirae ATCC 9790)

2e-61

23) OB0153
( NP_691074.1 )

integrase

NC_004193
(Oceanobacillus iheyensis HTE831)

5e-60

24) TEH_18510
( YP_004887342.1 )

putative phage integrase

NC_016052
(Tetragenococcus halophilus NBRC 12172)

3e-58

25) STP_1281
( YP_004479401.1 )

integrase

NC_015558
(Streptococcus parauberis KCTC 11537)

1e-57

26) M6_Spy0020
( YP_059338.1 )

DNA integration/recombination/invertion protein

NC_006086
(Streptococcus pyogenes MGAS10394)

3e-55

27) int315.6
( NP_665262.1 )

integrase - phage associated

NC_004070
(Streptococcus pyogenes MGAS315)

3e-55

28) SPs0408
( NP_801670.1 )

integrase

NC_004606
(Streptococcus pyogenes SSI-1)

3e-55

29) LSA0586
( YP_395201.1 )

site-specific recombinase, prophage lsa1 integrase

NC_007576
(Lactobacillus sakei 23K)

2e-54

30) L897_07765
( YP_008243805.1 )

integrase

NC_021807
(Streptococcus pyogenes HSC5)

3e-54

31) int1
( YP_598970.1 )

DNA integration/recombination/inversion protein

NC_008022
(Streptococcus pyogenes MGAS10270)

4e-54

32) int315.4
( NP_665070.1 )

integrase - phage associated

NC_004070
(Streptococcus pyogenes MGAS315)

4e-54

33) M28_Spy1285
( YP_280750.1 )

DNA integration/recombination/invertion protein

NC_007296
(Streptococcus pyogenes MGAS6180)

4e-54

34) SPs0597
( NP_801859.1 )

phage associated integrase

NC_004606
(Streptococcus pyogenes SSI-1)

4e-54

35) EHR_03625
( YP_006486588.1 )

phage integrase

NC_018081
(Enterococcus hirae ATCC 9790)

1e-53

36) SAIL_6830
( YP_008117302.1 )

Mobile element protein

NC_021507
(Streptococcus agalactiae ILRI112)

2e-53

37) MSA_7080
( YP_008086449.1 )

Mobile element protein

NC_021486
(Streptococcus agalactiae ILRI005)

2e-53

• Sequence Alignments

1) SAOV_0414c in NC_017337


> AY220730|25|G24|31616157|AAP55251.1|Staphylococcus_aureus_V329|+|25643..26779|sip|-|integrase 
protein
Length=378

 Score =  510 bits (1923),  Expect = 5e-146, Method: Compositional matrix adjust.
 Identities = 293/378 (78%), Positives = 335/378 (89%), Gaps = 0/378 (0%)

Query  1    MIKKYKKKDGSTAYMFVAYLGTDPITGKQKRTTRRGFKTEREAKIAEAKLQTEVSQNGFL  60
            MIKKY KKDGSTAYMFVAYLG DPIT KQKRTTRRGFKTEREAK+AEAKLQTEV  NGFL
Sbjct  1    MIKKYTKKDGSTAYMFVAYLGIDPITRKQKRTTRRGFKTEREAKLAEAKLQTEVQANGFL  60

Query  61   NNDITTFKEVYELWLEQYQNTVRESTYQRVLTLFDTAILEHFQDVPIKKITVPYCQKVIN  120
            NN+ITTFK+VY+LWLEQY++TVRESTYQRV+TLF+TAILEHF++V+IK IT+PYCQ+VIN
Sbjct  61   NNEITTFKQVYDLWLEQYKHTVRESTYQRVVTLFNTAILEHFNNVSIKSITIPYCQRVIN  120

Query  121  KWNKKYSDIKAIRIYTSNVFKYAVSLKIIVDNPFAHTKAPRKKEAQQDASTKYYSSDELK  180
            KWN KY D+KAIRIYTSNVF Y V+LKII +NPF HTK PRKKE+ Q+ S  YYS DEL+
Sbjct  121  KWNDKYKDMKAIRIYTSNVFEYDVNLKIITENPFKHTKQPRKKETPQEDSYVYYSRDELQ  180

Query  181  QFLTFVEDDPLYYAIFRTLAFTGFRRGELMALTWNDIDFTKQTISINKTCARGANYKLVI  240
             FL+FVE++ + YAIFRTLAFTGFRRGELMALTWNDI+F K+TI+INKTCARG NYK +I
Sbjct  181  TFLSFVEGNLVDYAIFRTLAFTGFRRGELMALTWNDINFEKKTITINKTCARGNNYKPII  240

Query  241  QEPKTKSSHRTISIDDKTASVLKSWRTHQRVESLKYGHNTSDKHQHVFTTVRDNKPLYPE  300
            Q PKTKSS RTIS+DDKT S+LK W+ +QR ESLK+GHN+  K+Q VFT V  NK LYPE
Sbjct  241  QPPKTKSSYRTISVDDKTLSILKQWKVQQRTESLKFGHNALKKDQFVFTNVSTNKRLYPE  300

Query  301  HCNKALDLICEKNSFKRIKVHGFRHTHCSLLFEAGLSIQEVQDRLGHGDIKTTMDIYAHV  360
             CNK L  +C K++FK+IK+HGFRH HCSLLFEAGL+IQEVQDRLGHGDIKTTMDIYAHV
Sbjct  301  YCNKVLANVCKKHNFKQIKLHGFRHVHCSLLFEAGLTIQEVQDRLGHGDIKTTMDIYAHV  360

Query  361  TEKQRDQVADKFAKYINF  378
            TEKQRDQVA+KFA+YINF
Sbjct  361  TEKQRDQVAEKFANYINF  378

2) SAB0342c in NC_007622


> AY220730|25|G24|31616157|AAP55251.1|Staphylococcus_aureus_V329|+|25643..26779|sip|-|integrase 
protein
Length=378

 Score =  510 bits (1923),  Expect = 5e-146, Method: Compositional matrix adjust.
 Identities = 293/378 (78%), Positives = 335/378 (89%), Gaps = 0/378 (0%)

Query  1    MIKKYKKKDGSTAYMFVAYLGTDPITGKQKRTTRRGFKTEREAKIAEAKLQTEVSQNGFL  60
            MIKKY KKDGSTAYMFVAYLG DPIT KQKRTTRRGFKTEREAK+AEAKLQTEV  NGFL
Sbjct  1    MIKKYTKKDGSTAYMFVAYLGIDPITRKQKRTTRRGFKTEREAKLAEAKLQTEVQANGFL  60

Query  61   NNDITTFKEVYELWLEQYQNTVRESTYQRVLTLFDTAILEHFQDVPIKKITVPYCQKVIN  120
            NN+ITTFK+VY+LWLEQY++TVRESTYQRV+TLF+TAILEHF++V+IK IT+PYCQ+VIN
Sbjct  61   NNEITTFKQVYDLWLEQYKHTVRESTYQRVVTLFNTAILEHFNNVSIKSITIPYCQRVIN  120

Query  121  KWNKKYSDIKAIRIYTSNVFKYAVSLKIIVDNPFAHTKAPRKKEAQQDASTKYYSSDELK  180
            KWN KY D+KAIRIYTSNVF Y V+LKII +NPF HTK PRKKE+ Q+ S  YYS DEL+
Sbjct  121  KWNDKYKDMKAIRIYTSNVFEYDVNLKIITENPFKHTKQPRKKETPQEDSYVYYSRDELQ  180

Query  181  QFLTFVEDDPLYYAIFRTLAFTGFRRGELMALTWNDIDFTKQTISINKTCARGANYKLVI  240
             FL+FVE++ + YAIFRTLAFTGFRRGELMALTWNDI+F K+TI+INKTCARG NYK +I
Sbjct  181  TFLSFVEGNLVDYAIFRTLAFTGFRRGELMALTWNDINFEKKTITINKTCARGNNYKPII  240

Query  241  QEPKTKSSHRTISIDDKTASVLKSWRTHQRVESLKYGHNTSDKHQHVFTTVRDNKPLYPE  300
            Q PKTKSS RTIS+DDKT S+LK W+ +QR ESLK+GHN+  K+Q VFT V  NK LYPE
Sbjct  241  QPPKTKSSYRTISVDDKTLSILKQWKVQQRTESLKFGHNALKKDQFVFTNVSTNKRLYPE  300

Query  301  HCNKALDLICEKNSFKRIKVHGFRHTHCSLLFEAGLSIQEVQDRLGHGDIKTTMDIYAHV  360
             CNK L  +C K++FK+IK+HGFRH HCSLLFEAGL+IQEVQDRLGHGDIKTTMDIYAHV
Sbjct  301  YCNKVLANVCKKHNFKQIKLHGFRHVHCSLLFEAGLTIQEVQDRLGHGDIKTTMDIYAHV  360

Query  361  TEKQRDQVADKFAKYINF  378
            TEKQRDQVA+KFA+YINF
Sbjct  361  TEKQRDQVAEKFANYINF  378

3) C248_0448 in NC_018608


> AY220730|25|G24|31616157|AAP55251.1|Staphylococcus_aureus_V329|+|25643..26779|sip|-|integrase 
protein
Length=378

 Score =  509 bits (1920),  Expect = 8e-146, Method: Compositional matrix adjust.
 Identities = 293/378 (78%), Positives = 335/378 (89%), Gaps = 0/378 (0%)

Query  1    MIKKYKKKDGSTAYMFVAYLGTDPITGKQKRTTRRGFKTEREAKIAEAKLQTEVSQNGFL  60
            MIKKY KKDGSTAYMFVAYLG DPIT KQKRTTRRGFKTEREAK+AEAKLQTEV  NGFL
Sbjct  1    MIKKYTKKDGSTAYMFVAYLGIDPITRKQKRTTRRGFKTEREAKLAEAKLQTEVQANGFL  60

Query  61   NNDITTFKEVYELWLEQYQNTVRESTYQRVLTLFDTAILEHFQDVPIKKITVPYCQKVIN  120
            NN+ITTFK+VY+LWLEQY++TVRESTYQRV+TLF+TAILEHF++V+IK IT+PYCQ+VIN
Sbjct  61   NNEITTFKQVYDLWLEQYKHTVRESTYQRVVTLFNTAILEHFNNVSIKSITIPYCQRVIN  120

Query  121  KWNKKYSDIKAIRIYTSNVFKYAVSLKIIVDNPFAHTKAPRKKEAQQDASTKYYSSDELK  180
            KWN KY D+KAIRIYTSNVF Y V+LKII +NPF HTK PRKKE+ Q+ S  YYS DEL+
Sbjct  121  KWNDKYKDMKAIRIYTSNVFEYDVNLKIITENPFKHTKQPRKKETPQEDSYVYYSRDELQ  180

Query  181  QFLTFVEDDPLYYAIFRTLAFTGFRRGELMALTWKDIDFTKQTISINKTCARGANYKLII  240
             FL+FVE++ + YAIFRTLAFTGFRRGELMALTW+DI+F K+TI+INKTCARG NYK II
Sbjct  181  TFLSFVEGNLVDYAIFRTLAFTGFRRGELMALTWNDINFEKKTITINKTCARGNNYKPII  240

Query  241  QEPKTKSSHRTISIDDKTASVLKSWRTHQRVESLKYGHNTSDKHQHVFTTVRDNKPLYPE  300
            Q PKTKSS RTIS+DDKT S+LK W+ +QR ESLK+GHN+  K+Q VFT V  NK LYPE
Sbjct  241  QPPKTKSSYRTISVDDKTLSILKQWKVQQRTESLKFGHNALKKDQFVFTNVSTNKRLYPE  300

Query  301  HCNKALDLICEKNSFKRIKVHGFRHTHCSLLFEAGLSIQEVQDRLGHGDIKTTMDIYAHV  360
             CNK L  +C K++FK+IK+HGFRH HCSLLFEAGL+IQEVQDRLGHGDIKTTMDIYAHV
Sbjct  301  YCNKVLANVCKKHNFKQIKLHGFRHVHCSLLFEAGLTIQEVQDRLGHGDIKTTMDIYAHV  360

Query  361  TEKQRDQVADKFAKYINF  378
            TEKQRDQVA+KFA+YINF
Sbjct  361  TEKQRDQVAEKFANYINF  378

4) SAPIG0469 in NC_017333


> AY220730|25|G24|31616157|AAP55251.1|Staphylococcus_aureus_V329|+|25643..26779|sip|-|integrase 
protein
Length=378

 Score =  509 bits (1920),  Expect = 8e-146, Method: Compositional matrix adjust.
 Identities = 293/378 (78%), Positives = 335/378 (89%), Gaps = 0/378 (0%)

Query  1    MIKKYKKKDGSTAYMFVAYLGTDPITGKQKRTTRRGFKTEREAKIAEAKLQTEVSQNGFL  60
            MIKKY KKDGSTAYMFVAYLG DPIT KQKRTTRRGFKTEREAK+AEAKLQTEV  NGFL
Sbjct  1    MIKKYTKKDGSTAYMFVAYLGIDPITRKQKRTTRRGFKTEREAKLAEAKLQTEVQANGFL  60

Query  61   NNDITTFKEVYELWLEQYQNTVRESTYQRVLTLFDTAILEHFQDVPIKKITVPYCQKVIN  120
            NN+ITTFK+VY+LWLEQY++TVRESTYQRV+TLF+TAILEHF++V+IK IT+PYCQ+VIN
Sbjct  61   NNEITTFKQVYDLWLEQYKHTVRESTYQRVVTLFNTAILEHFNNVSIKSITIPYCQRVIN  120

Query  121  KWNKKYSDIKAIRIYTSNVFKYAVSLKIIVDNPFAHTKAPRKKEAQQDASTKYYSSDELK  180
            KWN KY D+KAIRIYTSNVF Y V+LKII +NPF HTK PRKKE+ Q+ S  YYS DEL+
Sbjct  121  KWNDKYKDMKAIRIYTSNVFEYDVNLKIITENPFKHTKQPRKKETPQEDSYVYYSRDELQ  180

Query  181  QFLTFVEDDPLYYAIFRTLAFTGFRRGELMALTWKDIDFTKQTISINKTCARGANYKLII  240
             FL+FVE++ + YAIFRTLAFTGFRRGELMALTW+DI+F K+TI+INKTCARG NYK II
Sbjct  181  TFLSFVEGNLVDYAIFRTLAFTGFRRGELMALTWNDINFEKKTITINKTCARGNNYKPII  240

Query  241  QEPKTKSSHRTISIDDKTASVLKSWRTHQRVESLKYGHNTSDKHQHVFTTVRDNKPLYPE  300
            Q PKTKSS RTIS+DDKT S+LK W+ +QR ESLK+GHN+  K+Q VFT V  NK LYPE
Sbjct  241  QPPKTKSSYRTISVDDKTLSILKQWKVQQRTESLKFGHNALKKDQFVFTNVSTNKRLYPE  300

Query  301  HCNKALDLICEKNSFKRIKVHGFRHTHCSLLFEAGLSIQEVQDRLGHGDIKTTMDIYAHV  360
             CNK L  +C K++FK+IK+HGFRH HCSLLFEAGL+IQEVQDRLGHGDIKTTMDIYAHV
Sbjct  301  YCNKVLANVCKKHNFKQIKLHGFRHVHCSLLFEAGLTIQEVQDRLGHGDIKTTMDIYAHV  360

Query  361  TEKQRDQVADKFAKYINF  378
            TEKQRDQVA+KFA+YINF
Sbjct  361  TEKQRDQVAEKFANYINF  378

5) EHR_02815 in NC_018081


> AY220730|25|G24|31616157|AAP55251.1|Staphylococcus_aureus_V329|+|25643..26779|sip|-|integrase 
protein
Length=378

 Score =  314 bits (1177),  Expect = 5e-87, Method: Compositional matrix adjust.
 Identities = 187/386 (49%), Positives = 274/386 (71%), Gaps = 15/386 (3%)

Query  3    MIKQYQKKNGEKAWYFKTYLGIDPLTGKKRYTTKRGFKTQKEAKIALARLEVLATDKKLV  62
            MIK+Y KK+G  A  F +YLGIDP+T K++ TT+RGFKT++EAK+A A+L+     + ++
Sbjct  1    MIKKYTKKDGSTAYMFVAYLGIDPITRKQKRTTRRGFKTEREAKLAEAKLQTEVQANGFL  60

Query  63   KDNNYTFTQVKDMWIEQYKPTVRESTYLRVKFLFDKNISTFFGNKKIQSYNIAYCQEAIN  122
            +++  TF QV D+W+EQYK TVRESTY RV  LF+  I   F N  I+S  I+YCQ  IN
Sbjct  61   NNEITTFKQVYDLWLEQYKHTVRESTYQRVVTLFNTAILEHFNNVSIKSITIPYCQRVIN  120

Query  123  KWKEQYSTYKALKCYTSAVFDYAKKMNLIKENPMKEVTFSKGERKQKKTKLKYFEKEELQ  182
            KW+++Y   KA++ YTS VF+Y  ++++I ENP K+   ++     +     Y+ ++ELQ
Sbjct  121  KWNDKYKDMKAIRIYTSNVFEYDVNLKIITENPFKHTKQPRKKETPQEDSYVYYSRDELQ  180

Query  183  DFLECCQKDKFLITYPLFRVLAFTGIRKGEALALTWDDVDFFNKTLEINKTITRNSDNKF  242
             FL   + +  L+ Y++FR LAFTG+R+GE +ALTW+D++F +KT+ INKT +R ++ K 
Sbjct  181  TFLSFVEGN--LVDYAIFRTLAFTGFRRGELMALTWNDINFEKKTITINKTCARGNNYKP  238

Query  243  ISTPPKTNTSIRKISLDDETLNILKAWKTQQKRYLLAHGQHAKTKNQIIFSSKNNN----  298
            I  PPKT++S R IS+DD TL+ILK WK QQ+   L  G++A  K+Q++F++ + N    
Sbjct  239  IIQPPKTKSSYRTISVDDKTLSILKQWKVQQRTESLKFGHNALKKDQFVFTNVSTNKRLY  298

Query  299  ---CIDITRPNIILSRICKEHNFNDITIHGFRHTHCSLLFETGLSIKEVQERLGHSDIHT  355
               C      N +L+ +CK HNF++I +HGFRH HCSLLFE+GL+I+EVQ+RLGH+DI T
Sbjct  299  PEYC------NKVLANVCKKHNFKQIKLHGFRHVHCSLLFEAGLTIQEVQDRLGHGDIKT  352

Query  356  TMNIYTHVTKKQKERSADKFAAYLNF  381
            TM+IY+HVT KQ+++ A+KFA Y+NF
Sbjct  353  TMDIYAHVTEKQRDQVAEKFANYINF  378

6) ydcL in NC_015391


> AY220730|25|G24|31616157|AAP55251.1|Staphylococcus_aureus_V329|+|25643..26779|sip|-|integrase 
protein
Length=378

 Score =  305 bits (1142),  Expect = 3e-84, Method: Compositional matrix adjust.
 Identities = 179/380 (48%), Positives = 266/380 (70%), Gaps = 4/380 (1%)

Query  4    INKYKTKDGKTAYKFNAYLGTDSMTGKKKRTTRQGFKTKKEATLALSRLKLDIEMNGFKK  63
            I+KY  KDG TAY F AYLG D++T K+KRTTR+GFKT +EA LA ++L+ +++ NGF +
Sbjct  2    IKKYTKKDGSTAYMFVAYLGIDPITRKQKRTTRRGFKTEREAKLAEAKLQTEVQANGFLN  61

Query  64   SSTSKFKDVYELWIVQYKNTVKESTLNKTLELFNNHILPIFGDLYMDKITVVFCQAALND  123
            +  + FK+VY+LW+ QYK+TV+EST ++ + LFN  IL  F ++ +  IT+ +CQ  +N 
Sbjct  62   NEITTFKQVYDLWLEQYKHTVRESTYQRVVTLFNTAILEHFNNVSIKSITIPYCQRVINK  121

Query  124  WYKRLQKYKAISNYASRIFDYAITISAVEINPFKKVSMPIRKVDVEEEKVLNFYNKEELT  183
            W  + +  KAI  Y+S +F+Y + +  +  NPFK    P RK +  +E    +Y+++EL 
Sbjct  122  WNDKYKDMKAIRIYTSNVFEYDVNLKIITENPFKHTKQP-RKKETPQEDSYVYYSRDELQ  180

Query  184  LFFDHLKRENKPLQLALFRTLAFTGARKGEILALQWRDINFTDNTIKINKTVTFGLDNVL  243
             F+  +  E + ++ A+FRTLAFTG R+GE++AL W DINF  +TI INKT + G +   
Sbjct  181  TFLSFV--EGNLVDYAIFRTLAFTGFRRGELMALTWNDINFEKKTITINKTCARGNNYKP  238

Query  244  IIQTPKTKTSVRSISMDPQTMKILKSWKKTQKETYFKLGFNTLNPTQLVFPS-TKNTVMQ  302
            IIQ PKTK+S R+IS+D +T+ ILK WK  Q+   +K+G N+L+  Q+VF + + N  + 
Sbjct  239  IIQPPKTKSSYRTISVDDKTLSILKQWKVQQRTESLKFGHNALKKDQFVFTNVSTNKRLY  298

Query  303  PPKVGKYLDRLVNLYELKRITPHGFRHTHCSLLFEAGASVKEVQDRLGHSNIQTTMNIYA  362
            P    K L  + +  ++K+I  HGFRH HCSLLFEAG +++EVQDRLGH++I+TTM+IYA
Sbjct  299  PEYCNKVLANVCKKHNFKQIKLHGFRHVHCSLLFEAGLTIQEVQDRLGHGDIKTTMDIYA  358

Query  363  HVTEKAKENTADKFAKYVNF  382
            HVTEK +++ A+KFA+Y+NF
Sbjct  359  HVTEKQRDQVAEKFANYINF  378

7) Bsph_0482 in NC_010382


> AY220730|25|G24|31616157|AAP55251.1|Staphylococcus_aureus_V329|+|25643..26779|sip|-|integrase 
protein
Length=378

 Score =  271 bits (1014),  Expect = 4e-74, Method: Compositional matrix adjust.
 Identities = 165/383 (44%), Positives = 258/383 (68%), Gaps = 9/383 (2%)

Query  9    IKSYELKNGETRYEFPVYLGIDPLTGKQKRTMKRGFKTHKQAELALARIKLDVANGTYKQ  68
            IK Y  K+G T Y F  YLGIDP+T KQKRT +RGFKT+++A LA A+++ +V    + +
Sbjct  2    IKKYTKKDGSTAYMFVAYLGIDPITRKQKRTTRRGFKTEREAKLAEAKLQTEVQANGFLN  61

Query  69   ARAETYQELYDLWIPHYEKTVEESTFTKTVGIFRNHILPAMREYKIDKITVDVCQKHVDK  128
                T++++YDLW+ +Y  TV EST+ + V +F   IL    +  I  IT+  CQ+ ++K
Sbjct  62   NEITTFKQVYDLWLEQYKHTVRESTYQRVVTLFNTAILEHFNNVSIKSITIPYCQRVINK  121

Query  129  WAEKLKKFRVVKAYAAKVLDFAIKRGYMQTNPFTHVDMPIAASKKVTIIEEEEAENFYTR  188
            W +K K  + ++ Y+++V+++ ++   +  NPF H   P    KK T   +E++  +Y+R
Sbjct  122  WNDKYKDMKAIRIYTSNVFEYDVNLKIITENPFKHTKQP---RKKET--PQEDSYVYYSR  176

Query  189  EQLIQFLACLEQENNYKAYALFRLLAFSGMRKGEALALTWNDLNFTTNEMRINKALSRGK  248
            ++L  FL+ +  E N   YA+FR LAF+G R+GE +ALTWND+NF  + + INK+ +RG+
Sbjct  177  DELQTFLSFV--EGNLVDYAIFRTLAFTGFRRGELMALTWNDINFEKKTITINKTCARGN  234

Query  249  NNKLYVKSTKTGFA-RTIKMDDKTMAILKEWKKKQKQEYLVLGFNTMQPKQLVFSN-ERN  306
            N K  +++ KT  + RTI +DDKT++ILK+WK +Q+ E L +G N+++  Q+VF+N   N
Sbjct  235  NYKPIIQPPKTKSSYRTISVDDKTLSILKQWKVQQRTESLKFGHNALKKDQFVFTNVSTN  294

Query  307  EFLQPTKTRKWILHVQKKYKLGTITTHGLRHTHCSLLFEAGASLKEVQDRLGHSDVQTTM  366
              L P    K + +V KK ++  I  HG+RH HCSLLFEAG +++EVQDRLGH+D++TTM
Sbjct  295  KRLYPEYCNKVLANVCKKHNFKQIKLHGFRHVHCSLLFEAGLTIQEVQDRLGHGDIKTTM  354

Query  367  NIYAHVTKKAKEEAIQKFASYLE  389
            +IYAHVT K +++  +KFA+Y++
Sbjct  355  DIYAHVTEKQRDQVAEKFANYIN  377

8) Lbuc_0020 in NC_015428


> AY220730|25|G24|31616157|AAP55251.1|Staphylococcus_aureus_V329|+|25643..26779|sip|-|integrase 
protein
Length=378

 Score =  266 bits (993),  Expect = 2e-72, Method: Compositional matrix adjust.
 Identities = 169/383 (45%), Positives = 254/383 (67%), Gaps = 9/383 (2%)

Query  4    IKGYTLKNGNKCYLFQVYAGLDPQTGKPKRIMKRGFKTKKEATLAANQLELSISRGDFHQ  63
            IK YT K+G+  Y+F  Y G+DP T K KR  +RGFKT +EA LA  +L+  +   +F +
Sbjct  2    IKKYTKKDGSTAYMFVAYLGIDPITRKQKRTTRRGFKTEREAKLAEAKLQTEVQANGFLN  61

Query  64   ESNILFRQVYEQWYQGYINTVRVSTYCRTAGMFENHILPELGNKRIRTITIAQVQRAVNK  123
            +    F+QVY+ W + Y +TVR STY R   +F+  IL ++ N  I++ITI+  QR +NK
Sbjct  62   NEITTFKQVYDLWLEQYKHTVRESTYQRVVTLFNTAILEHFNNVSIKSITIPYCQRVINK  121

Query  124  WFKQATYNYKRWYE-YTMAIFDYALKHGYMHGDNPAKMITIPKRKETWGEKPENFWDKQQ  182
            W  +  Y+  +    YT  +F+Y ++   +  +NP K    P++KET  E +  +  +++
Sbjct  122  W--NDKYKDMKAIRIYTSNVFEYDVNLK-IITENPFKHTKQPRKKETPQEDSYVYYSRDE  178

Query  183  LAQFFSYIDPKEELEKYTLFRVLAFAGVRRGECLALTWNDVNFSKSTLSINKTLTQGMRG  242
            L  F+S+++   +L  Y++FR LAF+G RRGE +ALTWND+NF K T++INKT ++G   
Sbjct  179  LQTFLSFVE--GNLVDYAIFRTLAFTGFRRGELMALTWNDINFEKKTITINKTCARGNNY  236

Query  243  KQIIQPPKTKKGQRVIALDKITLNYLKQWRARQRREYLMLGFNTIQRGQLIFANSNNGFK  302
            K IIQPPKTK + R I++D  TL+ LKQW+ +QR E L +G N+++++Q++F+N +   K
Sbjct  237  KPIIQPPKTKSSYRTISVDDKTLSILKQWKVQQRTESLKFGHNALKKDQFVFTNVSTN-K  295

Query  303  SLNTP--AKWLNKIIKAHNLKKITVHGFRHTSASMLFAAGATIKEVQTRLGHEDAQTTLN  360
             L      K L ++ K HN+K+I +HGFRH   S+LF AG TI+EVQ RLGH D +TT++
Sbjct  296  RLYPEYCNKVLANVCKKHNFKQIKLHGFRHVHCSLLFEAGLTIQEVQDRLGHGDIKTTMD  355

Query  361  IYTHVTKKQDNQAAEKLANYLDF  383
            IY+HVT KQ +Q AEK+ANY++F
Sbjct  356  IYAHVTEKQRDQVAEKFANYINF  378

9) EFS1_1546 in NC_019770


> AY220730|25|G24|31616157|AAP55251.1|Staphylococcus_aureus_V329|+|25643..26779|sip|-|integrase 
protein
Length=378

 Score =  265 bits (989),  Expect = 3e-72, Method: Compositional matrix adjust.
 Identities = 174/381 (46%), Positives = 255/381 (67%), Gaps = 11/381 (2%)

Query  4    IKKYTKKDGSTAYMFNAYLGVDPVTGKSRRTTRRGFRTQKEAKLALSRLELEVDSKGFVK  63
            IKKYTKKDGSTAYMF AYLG+DP+T K +RTTRRGF+T++EAKLA ++L+ EV+++GF++
Sbjct  2    IKKYTKKDGSTAYMFVAYLGIDPITRKQKRTTRRGFKTEREAKLAEAKLQTEVQANGFLN  61

Query  64   QNYSTFKDVYELWYAQYVNTVKPITAGHTERMFRLHILPEFGNIKINKLTKLMCQKAVNK  123
            ++ +TFK+VY+LW  QY +TV+  T  +   +F   IL +F N+ I+ +T   CQ+ +NK
Sbjct  62   NEITTFKQVYDLWLEQYKHTVRESTYQRVVTLFNTAILEHFNNVSIKSITIPYCQRVINK  121

Query  124  WSKEYSAFHLLKSITQKMLHYAVAQDIIDINPMQYVVMPkkdktnetkkkQFLELSELKD  183
            W+  Y     ++  T ++++Y V   II  NP +    P+K  T +     +    EL+ 
Sbjct  122  WNDKYKDMKAIRIYTSNVFEYDVNLKIITENPFKHTKQPRKKETPQEDSYVYYSRDELQT  181

Query  184  FLAEAKETLNFQDYLIFRVLAFTGIRKGELYALTWEDINISYKQLTVNKTLTRIGKEY--  241
            FL+     L   DY IFR LAFTG+R+GEL ALTW+DIN+  K +T+NKT +R G++Y  
Sbjct  182  FLSFVEGNLV--DYAIFRTLAFTGFRRGELMALTWNDINFEKKTITINKTCAR-GNNYKP  238

Query  242  IISTPKTKASNRTIGLDDTTVSELIVWKKHQKQELLKYGFKTKSNDKQLIFHRKNNTLH-  300
            II  PKTK+S RTI++DD T+S L  WK +Q+ E LK+G ++  +D Q++F   +   + 
Sbjct  239  IIQPPKTKSSYRTISVDDKTLSILKQWKVQQRTESLKFGHNALKKD-QFVFTNVSTNKRL  297

Query  301  YPEHINFLLSSEMK----TSLSPHSFRHTHASLLFESGATIKDVQKRLGHTNVNTTMDIY  356
            YPE  N +L++  K      +  H+FRH H SLLFE+G TI++VQ RLGH +++TTMDIY
Sbjct  298  YPEYCNKVLANVCKKHNFKQIKLHGFRHVHCSLLFEAGLTIQEVQDRLGHGDIKTTMDIY  357

Query  357  THVTKSSERKAIDKLSNYANF  377
            +HVT     +  +K++NY NF
Sbjct  358  AHVTEKQRDQVAEKFANYINF  378

10) SSUA7_1364 in NC_017622


> AY220730|25|G24|31616157|AAP55251.1|Staphylococcus_aureus_V329|+|25643..26779|sip|-|integrase 
protein
Length=378

 Score =  245 bits (915),  Expect = 2e-66, Method: Compositional matrix adjust.
 Identities = 163/383 (43%), Positives = 252/383 (66%), Gaps = 10/383 (2%)

Query  1    MINQYQLKDGSIRYSYIAYVGIDPLTGKEKRVRKRGFKTKKEAKIAESQLLLKVEQDGFF  60
            MI++Y  KDGS  Y ++AY+GIDP+T K+KR  +RGFKT +EAK+AE++L   V+ +GF+
Sbjct  1    MIKKYTKKDGSTAYMFVAYLGIDPITRKQKRTTRRGFKTEREAKLAEAKLQTEVQANGFL  60

Query  61   DKPDRITFEEVYKIWLEHYKNTVKASTYARQKAQADLHIVPVFGACYVDKISLPMCQKQA  120
            ++ +  TF +VY +WLE+YK+TV+ STY R  +  +  I+  F    +  I++P CQ+  
Sbjct  61   NN-EITTFKQVYDLWLEQYKHTVRESTYQRVVTLFNTAILEHFNNVSIKSITIPYCQRVI  119

Query  121  QEWFKGYKKYANFIGMTKMVLDFAVNLGYIHDNPMKKIIKPRKSSEVDeeekkkeNFYSR  180
            + W   YK    +   T  V+++ VNL  I +NP K   +PRK    +E+      +YSR
Sbjct  120  NKWNDKYKDMKAIRIYTSNVFEYDVNLKIITENPFKHTKQPRKKETPQEDSYV---YYSR  176

Query  181  EDLQKFLDCVAKEDKEEIACIFRLLAFTGMRKSEVLALRWKDLDLFTSRLSVSQIVAYGE  240
            ++LQ FL  V  E++     IFR LAFTG R++E++AL W+D+++    +++++  A G+
Sbjct  177  DELQTFLSFV--EGNLVDYAIFRTLAFTGFRRGELMALTWNDINFEKKTITINKTCARGN  234

Query  241  NNSIVYQTPKTKKSKRTITLDPITVSILKKW--EKTRQFLNFPQR-VKPTDLVFPAETGN  297
            N   + Q PKTK S RTI++D  T+SILK+W  ++  + L+F +  +K  ++VF   + N
Sbjct  235  NYKPIIQPPKTKSSYRTISVDDKTLSILKQWKVQQRTESLKFGHNALKKDQFVFTNVSTN  294

Query  298  AHSF-DYINYNLRCILKKYDLPYITPHGFRHTHCSLLFEAGASIKEVQERLGHEDIKTTM  356
             + + +Y N  L  + KK ++  I  HGFRH HCSLLFEAG +I+EVQ+RLGH DIKTTM
Sbjct  295  KRLYPEYCNKVLANVCKKHNFKQIKLHGFRHVHCSLLFEAGLTIQEVQDRLGHGDIKTTM  354

Query  357  NIYAHVTENTKEKTAEKFAQFLG  379
            +IYAHVTE+ +++ AEKFA+++ 
Sbjct  355  DIYAHVTEKQRDQVAEKFANYIN  377

11) SSGZ1_1364 in NC_017617


> AY220730|25|G24|31616157|AAP55251.1|Staphylococcus_aureus_V329|+|25643..26779|sip|-|integrase 
protein
Length=378

 Score =  245 bits (915),  Expect = 2e-66, Method: Compositional matrix adjust.
 Identities = 163/383 (43%), Positives = 252/383 (66%), Gaps = 10/383 (2%)

Query  1    MINQYQLKDGSIRYSYIAYVGIDPLTGKEKRVRKRGFKTKKEAKIAESQLLLKVEQDGFF  60
            MI++Y  KDGS  Y ++AY+GIDP+T K+KR  +RGFKT +EAK+AE++L   V+ +GF+
Sbjct  1    MIKKYTKKDGSTAYMFVAYLGIDPITRKQKRTTRRGFKTEREAKLAEAKLQTEVQANGFL  60

Query  61   DKPDRITFEEVYKIWLEHYKNTVKASTYARQKAQADLHIVPVFGACYVDKISLPMCQKQA  120
            ++ +  TF +VY +WLE+YK+TV+ STY R  +  +  I+  F    +  I++P CQ+  
Sbjct  61   NN-EITTFKQVYDLWLEQYKHTVRESTYQRVVTLFNTAILEHFNNVSIKSITIPYCQRVI  119

Query  121  QEWFKGYKKYANFIGMTKMVLDFAVNLGYIHDNPMKKIIKPRKSSEVDeeekkkeNFYSR  180
            + W   YK    +   T  V+++ VNL  I +NP K   +PRK    +E+      +YSR
Sbjct  120  NKWNDKYKDMKAIRIYTSNVFEYDVNLKIITENPFKHTKQPRKKETPQEDSYV---YYSR  176

Query  181  EDLQKFLDCVAKEDKEEIACIFRLLAFTGMRKSEVLALRWKDLDLFTSRLSVSQIVAYGE  240
            ++LQ FL  V  E++     IFR LAFTG R++E++AL W+D+++    +++++  A G+
Sbjct  177  DELQTFLSFV--EGNLVDYAIFRTLAFTGFRRGELMALTWNDINFEKKTITINKTCARGN  234

Query  241  NNSIVYQTPKTKKSKRTITLDPITVSILKKW--EKTRQFLNFPQR-VKPTDLVFPAETGN  297
            N   + Q PKTK S RTI++D  T+SILK+W  ++  + L+F +  +K  ++VF   + N
Sbjct  235  NYKPIIQPPKTKSSYRTISVDDKTLSILKQWKVQQRTESLKFGHNALKKDQFVFTNVSTN  294

Query  298  AHSF-DYINYNLRCILKKYDLPYITPHGFRHTHCSLLFEAGASIKEVQERLGHEDIKTTM  356
             + + +Y N  L  + KK ++  I  HGFRH HCSLLFEAG +I+EVQ+RLGH DIKTTM
Sbjct  295  KRLYPEYCNKVLANVCKKHNFKQIKLHGFRHVHCSLLFEAGLTIQEVQDRLGHGDIKTTM  354

Query  357  NIYAHVTENTKEKTAEKFAQFLG  379
            +IYAHVTE+ +++ AEKFA+++ 
Sbjct  355  DIYAHVTEKQRDQVAEKFANYIN  377

12) SSUJS14_1499 in NC_017618


> AY220730|25|G24|31616157|AAP55251.1|Staphylococcus_aureus_V329|+|25643..26779|sip|-|integrase 
protein
Length=378

 Score =  245 bits (915),  Expect = 2e-66, Method: Compositional matrix adjust.
 Identities = 163/383 (43%), Positives = 252/383 (66%), Gaps = 10/383 (2%)

Query  1    MINQYQLKDGSIRYSYIAYVGIDPLTGKEKRVRKRGFKTKKEAKIAESQLLLKVEQDGFF  60
            MI++Y  KDGS  Y ++AY+GIDP+T K+KR  +RGFKT +EAK+AE++L   V+ +GF+
Sbjct  1    MIKKYTKKDGSTAYMFVAYLGIDPITRKQKRTTRRGFKTEREAKLAEAKLQTEVQANGFL  60

Query  61   DKPDRITFEEVYKIWLEHYKNTVKASTYARQKAQADLHIVPVFGACYVDKISLPMCQKQA  120
            ++ +  TF +VY +WLE+YK+TV+ STY R  +  +  I+  F    +  I++P CQ+  
Sbjct  61   NN-EITTFKQVYDLWLEQYKHTVRESTYQRVVTLFNTAILEHFNNVSIKSITIPYCQRVI  119

Query  121  QEWFKGYKKYANFIGMTKMVLDFAVNLGYIHDNPMKKIIKPRKSSEVDeeekkkeNFYSR  180
            + W   YK    +   T  V+++ VNL  I +NP K   +PRK    +E+      +YSR
Sbjct  120  NKWNDKYKDMKAIRIYTSNVFEYDVNLKIITENPFKHTKQPRKKETPQEDSYV---YYSR  176

Query  181  EDLQKFLDCVAKEDKEEIACIFRLLAFTGMRKSEVLALRWKDLDLFTSRLSVSQIVAYGE  240
            ++LQ FL  V  E++     IFR LAFTG R++E++AL W+D+++    +++++  A G+
Sbjct  177  DELQTFLSFV--EGNLVDYAIFRTLAFTGFRRGELMALTWNDINFEKKTITINKTCARGN  234

Query  241  NNSIVYQTPKTKKSKRTITLDPITVSILKKW--EKTRQFLNFPQR-VKPTDLVFPAETGN  297
            N   + Q PKTK S RTI++D  T+SILK+W  ++  + L+F +  +K  ++VF   + N
Sbjct  235  NYKPIIQPPKTKSSYRTISVDDKTLSILKQWKVQQRTESLKFGHNALKKDQFVFTNVSTN  294

Query  298  AHSF-DYINYNLRCILKKYDLPYITPHGFRHTHCSLLFEAGASIKEVQERLGHEDIKTTM  356
             + + +Y N  L  + KK ++  I  HGFRH HCSLLFEAG +I+EVQ+RLGH DIKTTM
Sbjct  295  KRLYPEYCNKVLANVCKKHNFKQIKLHGFRHVHCSLLFEAGLTIQEVQDRLGHGDIKTTM  354

Query  357  NIYAHVTENTKEKTAEKFAQFLG  379
            +IYAHVTE+ +++ AEKFA+++ 
Sbjct  355  DIYAHVTEKQRDQVAEKFANYIN  377

13) SSU1347 in NC_012925


> AY220730|25|G24|31616157|AAP55251.1|Staphylococcus_aureus_V329|+|25643..26779|sip|-|integrase 
protein
Length=378

 Score =  245 bits (915),  Expect = 2e-66, Method: Compositional matrix adjust.
 Identities = 163/383 (43%), Positives = 252/383 (66%), Gaps = 10/383 (2%)

Query  1    MINQYQLKDGSIRYSYIAYVGIDPLTGKEKRVRKRGFKTKKEAKIAESQLLLKVEQDGFF  60
            MI++Y  KDGS  Y ++AY+GIDP+T K+KR  +RGFKT +EAK+AE++L   V+ +GF+
Sbjct  1    MIKKYTKKDGSTAYMFVAYLGIDPITRKQKRTTRRGFKTEREAKLAEAKLQTEVQANGFL  60

Query  61   DKPDRITFEEVYKIWLEHYKNTVKASTYARQKAQADLHIVPVFGACYVDKISLPMCQKQA  120
            ++ +  TF +VY +WLE+YK+TV+ STY R  +  +  I+  F    +  I++P CQ+  
Sbjct  61   NN-EITTFKQVYDLWLEQYKHTVRESTYQRVVTLFNTAILEHFNNVSIKSITIPYCQRVI  119

Query  121  QEWFKGYKKYANFIGMTKMVLDFAVNLGYIHDNPMKKIIKPRKSSEVDeeekkkeNFYSR  180
            + W   YK    +   T  V+++ VNL  I +NP K   +PRK    +E+      +YSR
Sbjct  120  NKWNDKYKDMKAIRIYTSNVFEYDVNLKIITENPFKHTKQPRKKETPQEDSYV---YYSR  176

Query  181  EDLQKFLDCVAKEDKEEIACIFRLLAFTGMRKSEVLALRWKDLDLFTSRLSVSQIVAYGE  240
            ++LQ FL  V  E++     IFR LAFTG R++E++AL W+D+++    +++++  A G+
Sbjct  177  DELQTFLSFV--EGNLVDYAIFRTLAFTGFRRGELMALTWNDINFEKKTITINKTCARGN  234

Query  241  NNSIVYQTPKTKKSKRTITLDPITVSILKKW--EKTRQFLNFPQR-VKPTDLVFPAETGN  297
            N   + Q PKTK S RTI++D  T+SILK+W  ++  + L+F +  +K  ++VF   + N
Sbjct  235  NYKPIIQPPKTKSSYRTISVDDKTLSILKQWKVQQRTESLKFGHNALKKDQFVFTNVSTN  294

Query  298  AHSF-DYINYNLRCILKKYDLPYITPHGFRHTHCSLLFEAGASIKEVQERLGHEDIKTTM  356
             + + +Y N  L  + KK ++  I  HGFRH HCSLLFEAG +I+EVQ+RLGH DIKTTM
Sbjct  295  KRLYPEYCNKVLANVCKKHNFKQIKLHGFRHVHCSLLFEAGLTIQEVQDRLGHGDIKTTM  354

Query  357  NIYAHVTENTKEKTAEKFAQFLG  379
            +IYAHVTE+ +++ AEKFA+++ 
Sbjct  355  DIYAHVTEKQRDQVAEKFANYIN  377

14) NJAUSS_1413 in NC_020526


> AY220730|25|G24|31616157|AAP55251.1|Staphylococcus_aureus_V329|+|25643..26779|sip|-|integrase 
protein
Length=378

 Score =  245 bits (915),  Expect = 2e-66, Method: Compositional matrix adjust.
 Identities = 163/383 (43%), Positives = 252/383 (66%), Gaps = 10/383 (2%)

Query  1    MINQYQLKDGSIRYSYIAYVGIDPLTGKEKRVRKRGFKTKKEAKIAESQLLLKVEQDGFF  60
            MI++Y  KDGS  Y ++AY+GIDP+T K+KR  +RGFKT +EAK+AE++L   V+ +GF+
Sbjct  1    MIKKYTKKDGSTAYMFVAYLGIDPITRKQKRTTRRGFKTEREAKLAEAKLQTEVQANGFL  60

Query  61   DKPDRITFEEVYKIWLEHYKNTVKASTYARQKAQADLHIVPVFGACYVDKISLPMCQKQA  120
            ++ +  TF +VY +WLE+YK+TV+ STY R  +  +  I+  F    +  I++P CQ+  
Sbjct  61   NN-EITTFKQVYDLWLEQYKHTVRESTYQRVVTLFNTAILEHFNNVSIKSITIPYCQRVI  119

Query  121  QEWFKGYKKYANFIGMTKMVLDFAVNLGYIHDNPMKKIIKPRKSSEVDeeekkkeNFYSR  180
            + W   YK    +   T  V+++ VNL  I +NP K   +PRK    +E+      +YSR
Sbjct  120  NKWNDKYKDMKAIRIYTSNVFEYDVNLKIITENPFKHTKQPRKKETPQEDSYV---YYSR  176

Query  181  EDLQKFLDCVAKEDKEEIACIFRLLAFTGMRKSEVLALRWKDLDLFTSRLSVSQIVAYGE  240
            ++LQ FL  V  E++     IFR LAFTG R++E++AL W+D+++    +++++  A G+
Sbjct  177  DELQTFLSFV--EGNLVDYAIFRTLAFTGFRRGELMALTWNDINFEKKTITINKTCARGN  234

Query  241  NNSIVYQTPKTKKSKRTITLDPITVSILKKW--EKTRQFLNFPQR-VKPTDLVFPAETGN  297
            N   + Q PKTK S RTI++D  T+SILK+W  ++  + L+F +  +K  ++VF   + N
Sbjct  235  NYKPIIQPPKTKSSYRTISVDDKTLSILKQWKVQQRTESLKFGHNALKKDQFVFTNVSTN  294

Query  298  AHSF-DYINYNLRCILKKYDLPYITPHGFRHTHCSLLFEAGASIKEVQERLGHEDIKTTM  356
             + + +Y N  L  + KK ++  I  HGFRH HCSLLFEAG +I+EVQ+RLGH DIKTTM
Sbjct  295  KRLYPEYCNKVLANVCKKHNFKQIKLHGFRHVHCSLLFEAGLTIQEVQDRLGHGDIKTTM  354

Query  357  NIYAHVTENTKEKTAEKFAQFLG  379
            +IYAHVTE+ +++ AEKFA+++ 
Sbjct  355  DIYAHVTEKQRDQVAEKFANYIN  377

15) SSUSC84_1377 in NC_012924


> AY220730|25|G24|31616157|AAP55251.1|Staphylococcus_aureus_V329|+|25643..26779|sip|-|integrase 
protein
Length=378

 Score =  245 bits (915),  Expect = 2e-66, Method: Compositional matrix adjust.
 Identities = 163/383 (43%), Positives = 252/383 (66%), Gaps = 10/383 (2%)

Query  1    MINQYQLKDGSIRYSYIAYVGIDPLTGKEKRVRKRGFKTKKEAKIAESQLLLKVEQDGFF  60
            MI++Y  KDGS  Y ++AY+GIDP+T K+KR  +RGFKT +EAK+AE++L   V+ +GF+
Sbjct  1    MIKKYTKKDGSTAYMFVAYLGIDPITRKQKRTTRRGFKTEREAKLAEAKLQTEVQANGFL  60

Query  61   DKPDRITFEEVYKIWLEHYKNTVKASTYARQKAQADLHIVPVFGACYVDKISLPMCQKQA  120
            ++ +  TF +VY +WLE+YK+TV+ STY R  +  +  I+  F    +  I++P CQ+  
Sbjct  61   NN-EITTFKQVYDLWLEQYKHTVRESTYQRVVTLFNTAILEHFNNVSIKSITIPYCQRVI  119

Query  121  QEWFKGYKKYANFIGMTKMVLDFAVNLGYIHDNPMKKIIKPRKSSEVDeeekkkeNFYSR  180
            + W   YK    +   T  V+++ VNL  I +NP K   +PRK    +E+      +YSR
Sbjct  120  NKWNDKYKDMKAIRIYTSNVFEYDVNLKIITENPFKHTKQPRKKETPQEDSYV---YYSR  176

Query  181  EDLQKFLDCVAKEDKEEIACIFRLLAFTGMRKSEVLALRWKDLDLFTSRLSVSQIVAYGE  240
            ++LQ FL  V  E++     IFR LAFTG R++E++AL W+D+++    +++++  A G+
Sbjct  177  DELQTFLSFV--EGNLVDYAIFRTLAFTGFRRGELMALTWNDINFEKKTITINKTCARGN  234

Query  241  NNSIVYQTPKTKKSKRTITLDPITVSILKKW--EKTRQFLNFPQR-VKPTDLVFPAETGN  297
            N   + Q PKTK S RTI++D  T+SILK+W  ++  + L+F +  +K  ++VF   + N
Sbjct  235  NYKPIIQPPKTKSSYRTISVDDKTLSILKQWKVQQRTESLKFGHNALKKDQFVFTNVSTN  294

Query  298  AHSF-DYINYNLRCILKKYDLPYITPHGFRHTHCSLLFEAGASIKEVQERLGHEDIKTTM  356
             + + +Y N  L  + KK ++  I  HGFRH HCSLLFEAG +I+EVQ+RLGH DIKTTM
Sbjct  295  KRLYPEYCNKVLANVCKKHNFKQIKLHGFRHVHCSLLFEAGLTIQEVQDRLGHGDIKTTM  354

Query  357  NIYAHVTENTKEKTAEKFAQFLG  379
            +IYAHVTE+ +++ AEKFA+++ 
Sbjct  355  DIYAHVTEKQRDQVAEKFANYIN  377

16) SSU12_1416 in NC_017619


> AY220730|25|G24|31616157|AAP55251.1|Staphylococcus_aureus_V329|+|25643..26779|sip|-|integrase 
protein
Length=378

 Score =  245 bits (915),  Expect = 2e-66, Method: Compositional matrix adjust.
 Identities = 163/383 (43%), Positives = 252/383 (66%), Gaps = 10/383 (2%)

Query  1    MINQYQLKDGSIRYSYIAYVGIDPLTGKEKRVRKRGFKTKKEAKIAESQLLLKVEQDGFF  60
            MI++Y  KDGS  Y ++AY+GIDP+T K+KR  +RGFKT +EAK+AE++L   V+ +GF+
Sbjct  1    MIKKYTKKDGSTAYMFVAYLGIDPITRKQKRTTRRGFKTEREAKLAEAKLQTEVQANGFL  60

Query  61   DKPDRITFEEVYKIWLEHYKNTVKASTYARQKAQADLHIVPVFGACYVDKISLPMCQKQA  120
            ++ +  TF +VY +WLE+YK+TV+ STY R  +  +  I+  F    +  I++P CQ+  
Sbjct  61   NN-EITTFKQVYDLWLEQYKHTVRESTYQRVVTLFNTAILEHFNNVSIKSITIPYCQRVI  119

Query  121  QEWFKGYKKYANFIGMTKMVLDFAVNLGYIHDNPMKKIIKPRKSSEVDeeekkkeNFYSR  180
            + W   YK    +   T  V+++ VNL  I +NP K   +PRK    +E+      +YSR
Sbjct  120  NKWNDKYKDMKAIRIYTSNVFEYDVNLKIITENPFKHTKQPRKKETPQEDSYV---YYSR  176

Query  181  EDLQKFLDCVAKEDKEEIACIFRLLAFTGMRKSEVLALRWKDLDLFTSRLSVSQIVAYGE  240
            ++LQ FL  V  E++     IFR LAFTG R++E++AL W+D+++    +++++  A G+
Sbjct  177  DELQTFLSFV--EGNLVDYAIFRTLAFTGFRRGELMALTWNDINFEKKTITINKTCARGN  234

Query  241  NNSIVYQTPKTKKSKRTITLDPITVSILKKW--EKTRQFLNFPQR-VKPTDLVFPAETGN  297
            N   + Q PKTK S RTI++D  T+SILK+W  ++  + L+F +  +K  ++VF   + N
Sbjct  235  NYKPIIQPPKTKSSYRTISVDDKTLSILKQWKVQQRTESLKFGHNALKKDQFVFTNVSTN  294

Query  298  AHSF-DYINYNLRCILKKYDLPYITPHGFRHTHCSLLFEAGASIKEVQERLGHEDIKTTM  356
             + + +Y N  L  + KK ++  I  HGFRH HCSLLFEAG +I+EVQ+RLGH DIKTTM
Sbjct  295  KRLYPEYCNKVLANVCKKHNFKQIKLHGFRHVHCSLLFEAGLTIQEVQDRLGHGDIKTTM  354

Query  357  NIYAHVTENTKEKTAEKFAQFLG  379
            +IYAHVTE+ +++ AEKFA+++ 
Sbjct  355  DIYAHVTEKQRDQVAEKFANYIN  377

17) SSUBM407_1424 in NC_012926


> AY220730|25|G24|31616157|AAP55251.1|Staphylococcus_aureus_V329|+|25643..26779|sip|-|integrase 
protein
Length=378

 Score =  244 bits (911),  Expect = 5e-66, Method: Compositional matrix adjust.
 Identities = 162/383 (43%), Positives = 252/383 (66%), Gaps = 10/383 (2%)

Query  1    MINQYQLKDGSIRYSYIAYVGIDPLTGKEKRVRKRGFNTKKEAKIAESQLLLKVEQDGFF  60
            MI++Y  KDGS  Y ++AY+GIDP+T K+KR  +RGF+T +EAK+AE++L   V+ +GF+
Sbjct  1    MIKKYTKKDGSTAYMFVAYLGIDPITRKQKRTTRRGFKTEREAKLAEAKLQTEVQANGFL  60

Query  61   DKPDRITFEEVYKIWLEHYKNTVKASTYARQKAQADLHIVPVFGACYVDKISLPMCQKQA  120
            ++ +  TF +VY +WLE+YK+TV+ STY R  +  +  I+  F    +  I++P CQ+  
Sbjct  61   NN-EITTFKQVYDLWLEQYKHTVRESTYQRVVTLFNTAILEHFNNVSIKSITIPYCQRVI  119

Query  121  QEWFKGYKKYANFIGMTKMVLDFAVNLGYIHDNPMKKIIKPRKSSEVDeeekkkeNFYSR  180
            + W   YK    +   T  V+++ VNL  I +NP K   +PRK    +E+      +YSR
Sbjct  120  NKWNDKYKDMKAIRIYTSNVFEYDVNLKIITENPFKHTKQPRKKETPQEDSYV---YYSR  176

Query  181  EDLQKFLDCVAKEDKEEIACIFRLLAFTGMRKSEVLALRWKDLDLFTSRLSVSQIVAYGE  240
            ++LQ FL  V  E++     IFR LAFTG R++E++AL W+D+++    +++++  A G+
Sbjct  177  DELQTFLSFV--EGNLVDYAIFRTLAFTGFRRGELMALTWNDINFEKKTITINKTCARGN  234

Query  241  NNSIVYQTPKTKKSKRTITLDPITVSILKKW--EKTRQFLNFPQR-VKPTDLVFPAETGN  297
            N   + Q PKTK S RTI++D  T+SILK+W  ++  + L+F +  +K  ++VF   + N
Sbjct  235  NYKPIIQPPKTKSSYRTISVDDKTLSILKQWKVQQRTESLKFGHNALKKDQFVFTNVSTN  294

Query  298  AHSF-DYINYNLRCILKKYDLPYITPHGFRHTHCSLLFEAGASIKEVQERLGHEDIKTTM  356
             + + +Y N  L  + KK ++  I  HGFRH HCSLLFEAG +I+EVQ+RLGH DIKTTM
Sbjct  295  KRLYPEYCNKVLANVCKKHNFKQIKLHGFRHVHCSLLFEAGLTIQEVQDRLGHGDIKTTM  354

Query  357  NIYAHVTENTKEKTAEKFAQFLG  379
            +IYAHVTE+ +++ AEKFA+++ 
Sbjct  355  DIYAHVTEKQRDQVAEKFANYIN  377

18) SPPN_05300 in NC_015875


> AY220730|25|G24|31616157|AAP55251.1|Staphylococcus_aureus_V329|+|25643..26779|sip|-|integrase 
protein
Length=378

 Score =  239 bits (890),  Expect = 2e-64, Method: Compositional matrix adjust.
 Identities = 156/382 (41%), Positives = 243/382 (64%), Gaps = 10/382 (2%)

Query  1    MIKKYITKKGETRYLFQTYLGIDPATGKEKRTTRRGFKTIKEAKAAERDLLLDVEENVFS  60
            MIKKY  K G T Y+F +YLGIDP T K+KRTTRRGFKT +EAK AE  L  +V+ N F 
Sbjct  1    MIKKYTKKDGSTAYMFVAYLGIDPITRKQKRTTRRGFKTEREAKLAEAKLQTEVQANGFL  60

Query  61   NNEDFQNPTFAEVAELWLDSYKSTVKPTTYQNVKKKLRIIIDSYFTDMKIQQISVAYCQK  120
            NNE     TF +V +LWL+ YK TV+ +TYQ V   +   I   F ++ I+ I+++YCQ+
Sbjct  61   NNE---ITTFKQVYDLWLEQYKHTVRESTYQRVVTLFNTAILEHFNNVSIKSITIPYCQR  117

Query  121  VAIQLSNRYILYANYYSVISRIFKYAVSLDIIKLNPLDKIIKPKNRPLKGKEN--HYTKQ  178
            V  + +++Y          S +F Y V+L II  NP+    +P+++     ++   Y+++
Sbjct  118  VINKWNDKYKDMKAIRIYTSNVFEYDVNLKIITENPFKHTKQPRKKETPQEDSYVYYSRD  177

Query  179  ELTEFLKVYKVNCKPVDYTFFHLLAFSGLRTGESIGLMWSDVDFENKLLSISRTAVVIGK  238
            EL  FL    V+ + VDY++F+ LAF+G+R GE ++L W+D++FE+K ++I++T     +
Sbjct  178  ELQTFLSF--VEGNLVDYAIFRTLAFTGFRRGELMALTWNDINFEKKTITINKTCARGNN  235

Query  239  -KQTVQDPKTKRSKRVITLDDETLNVLKLWKRQQIKEYFQAGVPYKRESNYIFTN-SFGG  296
             K  +Q PKTK S R I++DD TL++LK WK QQ  E ++ G    +  +++FTN S   
Sbjct  236  YKPIIQPPKTKSSYRTISVDDKTLSILKQWKVQQRTESLKFGHNALKKDQFVFTNVSTNK  295

Query  297  WISPSAVKERLRRFFCEHKDVKKITPHGFRHTHASLLFEAGITAKIISDRLGHNNVQTTL  356
            ++ P   +  L    C   + K+I  HGFRH H SLLFEAG+T + + DRLGH +++TT+
Sbjct  296  RLYPEYCNKVLAN-VCKKHNFKQIKLHGFRHVHCSLLFEAGLTIQEVQDRLGHGDIKTTM  354

Query  357  DMYTHINDNQRFEVVDQLMDFI  378
            D+Y+H+ ++QR +V +++ ++I
Sbjct  355  DIYAHVTEKQRDQVAEKFANYI  376

19) LVISKB_0737 in NC_020819


> AY220730|25|G24|31616157|AAP55251.1|Staphylococcus_aureus_V329|+|25643..26779|sip|-|integrase 
protein
Length=378

 Score =  238 bits (887),  Expect = 4e-64, Method: Compositional matrix adjust.
 Identities = 154/382 (41%), Positives = 249/382 (66%), Gaps = 8/382 (2%)

Query  4    IKKYTDKHGETRYSFQLYVGTNPQTGKPKKTSRRGFKTRKEATLAASRLELEASTGSLQQ  63
            IKKYT K+G T Y F  Y+G +P T K K+T+RRGFKT +EA LA ++L+ E  + ++ +
Sbjct  2    IKKYTKKDGSTAYMFVAYLGIDPITRKQKRTTRRGFKTEREAKLAEAKLQTEVQANGFLN  61

Query  64   DNNILFETVYHEWYEVYANTVQESTTVRVTGMFDSHILPAFGNKRIRTITLSALQSAVND  123
            ++   F  VY+ W E Y +TV+EST  RV  +F++ IL  F N  I++IT++  Q  +N 
Sbjct  62   NEITTFKQVYDLWLEQYKHTVRESTYQRVVTLFNTAILEHFNNVSIKSITIPYCQRVINK  121

Query  124  WSKEVKRNYKRWYYYTRQVFQYALKVGYIDNNPATLVTVPKPDISWQRDKNKFWTKAQMV  183
            W+   K + K    YT +VF+Y +++  I +NP      P+   + Q D   + ++ ++ 
Sbjct  122  WNDKYK-DMKAIRIYTSNVFEYDVNLKIITENPFKHTKQPRKKETPQEDSYVYYSRDELQ  180

Query  184  HFFSYIDPVESAEKYTLFRVLAYTGIRRGECLALTWQDINFRQATMTISKTVTQGHGGKQ  243
             F+S+++   +   Y++FR LA+TG+RRGE +ALTW+DINF + T+TI+KT ++G+  K 
Sbjct  181  TFLSFVE--GNLVDYAIFRTLAFTGFRRGELMALTWNDINFEKKTITINKTCARGNNYKP  238

Query  244  IIQPPKTSAGKRTIPIDEVTLGHLKHWRHAQQRLYLMMGYNTMAPGQLIFANRVNGYKSL  303
            IIQPPKT ++ RTI++D+ TL+ LK+W+  Q+   L  G N++  +Q++F+N V+  K L
Sbjct  239  IIQPPKTKSSYRTISVDDKTLSILKQWKVQQRTESLKFGHNALKKDQFVFTN-VSTNKRL  297

Query  304  --NTPGKWLHTIIDDKPDEFPQITIHKFRHTFTSLMFESGATIKEVQGLLGDADATTVMN  361
              +   K L  +   K ++F QI +H FRH   SL+FE+G TI+EVQ+ LG++D  T M+
Sbjct  298  YPEYCNKVLANVC--KKHNFKQIKLHGFRHVHCSLLFEAGLTIQEVQDRLGHGDIKTTMD  355

Query  362  VYAHVSKKQQKQASDNFARFMQ  383
            +YAHV+ KQ+ Q +++FA +++
Sbjct  356  IYAHVTEKQRDQVAEKFANYIN  377

20) JDM1_0030 in NC_012984


> AY220730|25|G24|31616157|AAP55251.1|Staphylococcus_aureus_V329|+|25643..26779|sip|-|integrase 
protein
Length=378

 Score =  237 bits (884),  Expect = 7e-64, Method: Compositional matrix adjust.
 Identities = 163/386 (43%), Positives = 243/386 (63%), Gaps = 14/386 (3%)

Query  4    IKKYQDKDGNTRYQFQVYLGVDPQTGKKKSTRRRGFKSKSAARIALSRIEVELQQEPVLP  63
            IKKY  KDG+T Y F  YLG+DP T K+K T RRGFK+   A++A ++++ E+Q +  L 
Sbjct  2    IKKYTKKDGSTAYMFVAYLGIDPITRKQKRTTRRGFKTEREAKLAEAKLQTEVQANGFLN  61

Query  64   VDNNILFVNVYHEWYDQYINTVRESTWARTAGMFDNHILPLFGNKRLRTITVNQCQRAVN  123
             +    F +VY+ W +QY +TVREST  R   +F+  IL  F N  +++IT+  CQR +N
Sbjct  62   NEITT-FKQVYDLWLEQYKHTVRESTYQRVVTLFNTAILEHFNNVSIKSITIPYCQRVIN  120

Query  124  LW---FKEVTYNYKRWYNYLVAVFEYGLKHGYITHNPARMITMPVKPDSWGDKPDNFWDR  180
             W   +K++    K    Y   VFEY+++   IT+NP +    P K ++  + +  +  R
Sbjct  121  KWNDKYKDM----KAIRIYTSNVFEYDVNLKIITENPFKHTKQPRKKETPQEDSYVYYSR  176

Query  181  DQLKTFFKCIDQQKETEKYCLFRVLAFAGVRRGECLALTWQDIDFVHKNLRVNKTLTQGK  240
            D+L+TF+  ++   +   Y +FR LAF+G RRGE +ALTW+DI+F  K + +NKT ++G+
Sbjct  177  DELQTFLSFVEG--NLVDYAIFRTLAFTGFRRGELMALTWNDINFEKKTITINKTCARGN  234

Query  241  RGKQIIQAPKTKKGRRTVSLDNTTVEILQRWHKQQREYYLFLGFNTLQPDQLVFANTKNG  300
              K IIQ+PKTK + RT+S+D+ T+ IL++W  QQR   L +G N+L+ DQ+VF+N    
Sbjct  235  NYKPIIQPPKTKSSYRTISVDDKTLSILKQWKVQQRTESLKFGHNALKKDQFVFTNVSTN  294

Query  301  FKSLNTP--GKWLKRIITDYHLTPSITVHGFRHSHASALFAAGATIKEVQTRLGHEDVAT  358
             K L      K L  +    ++   I +HGFRH H S LF AG TI+EVQ RLGH D+ T
Sbjct  295  -KRLYPEYCNKVLANVCKKHNFKQ-IKLHGFRHVHCSLLFEAGLTIQEVQDRLGHGDIKT  352

Query  359  TLNVYTHVTKGQNQQAANKLANYLGF  384
            T+++Y+HVT  Q +Q A+K+ANY+ F
Sbjct  353  TMDIYAHVTEKQRDQVAEKFANYINF  378

21) lp_3390 in NC_004567


> AY220730|25|G24|31616157|AAP55251.1|Staphylococcus_aureus_V329|+|25643..26779|sip|-|integrase 
protein
Length=378

 Score =  235 bits (876),  Expect = 3e-63, Method: Compositional matrix adjust.
 Identities = 154/380 (41%), Positives = 239/380 (63%), Gaps = 9/380 (2%)

Query  11   KQYKTKSGA---FWEAFTSVGKDTNGKAKRMHKRGFKTKKEAQLWTSNVQTDFTKNGFIA  67
            K+Y  K G+      A+ +++  T  K KR  +RGFKT +EA+L  +++QT+   NGF+ 
Sbjct  3    KKYTKKDGSTAYMFVAYLGIDPITR-KQKRTTRRGFKTEREAKLAEAKLQTEVQANGFLN  61

Query  68   NDNITFAELYTKWFNEDYKEQVKESTYMITDDIFRLHILPELGSQRVKRITVAQCQSIVH  127
            N+  TF ++Y  W+ E+YK+ V+ESTY     +F   IL ++ +  +K IT++ CQ +++
Sbjct  62   NEITTFKQVYDLWL-EQYKHTVRESTYQRVVTLFNTAILEHFNNVSIKSITIPYCQRVIN  120

Query  128  KWLNQGFKTYRRFRTYAISVFDFGVRMELTTRNPMAKTSIPKQKTKPQAPHVDFYEKSEL  187
            KW N+ +K  + +R Y+ +VF+++V + + T NP   T  P++K  PQ     +Y + EL
Sbjct  121  KW-NDKYKDMKAIRIYTSNVFEYDVNLKIITENPFKHTKQPRKKETPQEDSYVYYSRDEL  179

Query  188  LHFLDCASKHENPQAFMFFRLLAFTGLRRGEALALQWSDINFETNELTVNKTQAVGKRWR  247
              FL     + N   + +FR LAFTG+RRGE +AL W+DINFE + +T+NKT A G+  +
Sbjct  180  QTFLSFV--EGNLVDYAIFRTLAFTGFRRGELMALTWNDINFEKKTITINKTCARGNNYK  237

Query  248  TIIQTPKTNTSYRTIVLDPDTAQWLHKWKMTQARQCFELGFNANDPSQLVFTN-QQNKLM  306
             IIQ PKT++SYRTI +D  T   L +WK+ Q  + + +G NA    Q+VFTN   NK +
Sbjct  238  PIIQPPKTKSSYRTISVDDKTLSILKQWKVQQRTESLKFGHNALKKDQFVFTNVSTNKRL  297

Query  307  SPSTVNYFNWSICKKYGLRHIKIHAFRHTFCTLAFEAHAGINEVSKTLGHADLKITEQIY  366
             P   N    ++CKK  +++IK+H+FRH  C+L FEA   I+EV   LGH+D+K T +IY
Sbjct  298  YPEYCNKVLANVCKKHNFKQIKLHGFRHVHCSLLFEAGLTIQEVQDRLGHGDIKTTMDIY  357

Query  367  LHVTKKQKNETASKLARYMS  386
             HVT KQ+++ A K+A Y++
Sbjct  358  AHVTEKQRDQVAEKFANYIN  377

22) EHR_00880 in NC_018081


> AY220730|25|G24|31616157|AAP55251.1|Staphylococcus_aureus_V329|+|25643..26779|sip|-|integrase 
protein
Length=378

 Score =  229 bits (853),  Expect = 2e-61, Method: Compositional matrix adjust.
 Identities = 161/387 (42%), Positives = 256/387 (67%), Gaps = 16/387 (4%)

Query  3    MIKQYQKKNGEKAWYFKTYLGIDPLTGKKRYTTKRGFKTQKEAKIALARLELERQKAGMP  62
            MIK+Y KK+G  A  F +YLGIDP+T K++ TT+RGFKT++EAK+A A+L+ E Q  G  
Sbjct  1    MIKKYTKKDGSTAYMFVAYLGIDPITRKQKRTTRRGFKTEREAKLAEAKLQTEVQANGFL  60

Query  63   ISTNTTFKKAAELWLENYKKTVKESSYSRTKIIFDKHIYPKFGNIKLSKINTAYCQKIVN  122
             +  TTFK+  +LWLE+YK TV+ES+Y R   +F+  I   F N+ +  I  +YCQ+++N
Sbjct  61   NNEITTFKQVYDLWLEQYKHTVRESTYQRVVTLFNTAILEHFNNVSIKSITIPYCQRVIN  120

Query  123  DWSEKGTSKQYPLFVNYMNKVFKYAINIGLISDNPTLNLIIP-KPQIktekklklytkeq  181
             W++K   K+   +  Y ++VF Y +N+ +I++NP  +   P K +   E     Y++++
Sbjct  121  KWNDK--YKDMKAIRIYTSNVFEYDVNLKIITENPFKHTKQPRKKETPQEDSYVYYSRDE  178

Query  182  lelFLSEVSKEQNPYLKNRDYTLFRLLAFSGCRIGEILALTWDNINFKTHEMTIKKTVAR  241
            L+ FLS V  +        DY++FR LAF+G R GE++ALTW++INF    +TI+KT AR
Sbjct  179  LQTFLSFVEGNLV------DYAIFRTLAFTGFRRGELMALTWNDINFEKKTITINKTCAR  232

Query  242  SDKY-YISETPKTKKSNRIIYLDEKTIKQLKFWKLEQRKYLFQLG---FTKANYLFTNDE  297
            +++Y  I + PKTK S R I +D+KT+  LK WK++QR   +++G   + K +++FTN  
Sbjct  233  GNNYKPIIQPPKTKSSYRTISVDDKTLSILKQWKVQQRTESLKFGHNALKKDQFVFTNVS  292

Query  298  NSFTINQAVTERY--NVYRERAALPYIGLHGFRHTHASMLYEAGADHKEVQERMGHANIK  355
             +  +     ++   NV + +  +  I LHGFRH H S+L+EAG   +EVQ+R+GH++IK
Sbjct  293  TNKRLYPEYCNKVLANVCK-KHNFKQIKLHGFRHVHCSLLFEAGLTIQEVQDRLGHGDIK  351

Query  356  TTMDTYTHITNSKKEETTQKLTNYINF  382
            TTMD Y+H+T+ ++++ ++K++NYINF
Sbjct  352  TTMDIYAHVTEKQRDQVAEKFANYINF  378

23) OB0153 in NC_004193


> AY220730|25|G24|31616157|AAP55251.1|Staphylococcus_aureus_V329|+|25643..26779|sip|-|integrase 
protein
Length=378

 Score =  224 bits (835),  Expect = 5e-60, Method: Compositional matrix adjust.
 Identities = 162/394 (42%), Positives = 256/394 (65%), Gaps = 22/394 (5%)

Query  4    IKKYTKKDGTTAYMFNAYLGKDPLtgkkkrttrrgfktkkDANIALSKILVEVDELGIRQ  63
            IKKYTKKDG+TAYMF AYLG DP+T K+KRTTRRGFKT ++A++A +K+  EV+  G+ +
Sbjct  2    IKKYTKKDGSTAYMFVAYLGIDPITRKQKRTTRRGFKTEREAKLAEAKLQTEVQANGFLN  61

Query  64   NDQLTFQEVFEEWFKQHRREVKPTTVYAMESKFNRRILPVFGPYKMKDITRSHCQKAING  123
            N+  TF++V++ W+ Q ++ V+ +T   + + FN  IL  F    +K IT + CQ+ IN 
Sbjct  62   NEITTFKQVYDLWLEQYKHTVRESTYQRVVTLFNTAILEHFNNVSIKSITIPYCQRVINK  121

Query  124  WAKELKTFKDYKIQANQVFRYAMKMDMIKRNPMDYVTLPKLKHEMEYVAELEEKKHYYTR  183
            W    K  K  +I +++VF Y +++ +I  NP      P+ K+  +     E+   YY+R
Sbjct  122  WNDKYKDMKAIRIYTSNVFEYDVNLKIITENPFKHTKQPRKKETPQ-----EDSYVYYSR  176

Query  184  EELRTFLEAIQKDDMAYTMLRLLSFTGARKGELYALHWSDVDFHQKSISLKKTLIYTGGE  243
            +EL+TFL  ++ + + Y+++R L+FTG R+GEL AL W+D++F++K+I+++KT       
Sbjct  177  DELQTFLSFVEGNLVDYAIFRTLAFTGFRRGELMALTWNDINFEKKTITINKTCARGNNY  236

Query  244  KQ-LQTSKTKASRRIVSVDDETLAILKKWRSKQIQRYLTLELAAPFQSDDKQPIFTVYNQ  302
            K  +Q +KTK+S R +SVDD TL+ILK+W+ +Q    L +      ++  K+  F V+ +
Sbjct  237  KPIIQPPKTKSSYRTISVDDKTLSILKQWKVQQRTESLKFG-----HNALKKDQF-VFTN  290

Query  303  LKHEM----DYCRLAYLNDKLERIYQKNPELPQIKVHEFRHTHASLLFAAGASIKDVQSR  358
            +  +     +YC     N  L  + +K+ ++ QIK+H FRH H SLLF AG +I++VQ R
Sbjct  291  VSTNKRLYPEYC-----NKVLANVCKKH-NFKQIKLHGFRHVHCSLLFEAGLTIQEVQDR  344

Query  359  LGHTDIQTTMDIYTHVTDEAKEKTAEMFQKYMTF  392
            LGH DI+TTMDIY+HVT+  +++ AE F +Y+ F
Sbjct  345  LGHGDIKTTMDIYAHVTEKQRDQVAEKFANYINF  378

24) TEH_18510 in NC_016052


> AY220730|25|G24|31616157|AAP55251.1|Staphylococcus_aureus_V329|+|25643..26779|sip|-|integrase 
protein
Length=378

 Score =  218 bits (812),  Expect = 3e-58, Method: Compositional matrix adjust.
 Identities = 156/381 (41%), Positives = 242/381 (64%), Gaps = 12/381 (3%)

Query  4    IKKYTKKDGSTAYMFNAYLGVNPKTGKPKRTTRRGFSTSkeaklalarlelGEDEPTPKN  63
            IKKYTKKDGSTAYMF AYLG++P T K KRTTRRGF T +EAKLA A+L   + E  ++ 
Sbjct  2    IKKYTKKDGSTAYMFVAYLGIDPITRKQKRTTRRGFKTEREAKLAEAKL---QTEVQANG  58

Query  64   EIQKKYITFKDVYETWYTIYKETVSPYTAECTARYFKNHILPALGNKVIDQITYNDCQLA  123
             +++   TFK+VY+ W   YK+TV   T +     F+  IL  + N  I  IT   CQ  
Sbjct  59   FLNNEITTFKQVYDLWLEQYKHTVRESTYQRVVTLFNTAILEHFNNVSIKSITIPYCQRV  118

Query  124  VIKWAKTQKRFSTYKDYASKVMKYARKNKWINYNPFDDVDMPKKWEENKKETDKFYTKEE  183
            + KW    K   + + Y+S+V  Y  + K I  NPF +   P+K E  + ++  +Y+++E
Sbjct  119  INKWNDKYKDMKAIRIYTSNVFEYDVNLKIITENPFKHTKQPRKKETPQEDSYVYYSRDE  178

Query  184  LNTFLNWAQSNLSYQDFTAFRVLAYSGVRKGELRALLWDDVDFKANTIDINKA-IRMKEG  242
            L+TFL+  ++NL   D++ FR LA++G R+GEL AL W+D++F  +TI INK+  R ++ 
Sbjct  179  LQTFLSFVEGNLV--DYAIFRTLAFTGFRRGELMALTWNDINFEKKTITINKTCARGNNY  236

Query  243  KEYVGQTKNDPSMRIIGLDDVTIKILKKWNLEQRKYFLKRG-ISINKKQYIFS--WEDNQ  299
            K  +   K  +S R I++DD T+ ILK+W+++QR   LK G  +++K Q++F+    +++
Sbjct  237  KPIIQPPKTKSSYRTISVDDKTLSILKQWKVQQRTESLKFGHNALKKDQFVFTNVSTNKR  296

Query  300  TFMPYYR--LSNVFKKYPGKKISIHGFRHTHATLSLDAGVKPKDVQARLGHIKSDMTMNV  357
             +  Y    L+NV KK   K+I +HGFRH H +L ++AG+  ++VQ RLGH     TM++
Sbjct  297  LYPEYCNKVLANVCKKHNFKQIKLHGFRHVHCSLLFEAGLTIQEVQDRLGHGDIKTTMDI  356

Query  358  YAHPVENNKE-ITQKFVDYLN  377
            YAH  E++++ +++KF +Y+N
Sbjct  357  YAHVTEKQRDQVAEKFANYIN  377

25) STP_1281 in NC_015558


> AY220730|25|G24|31616157|AAP55251.1|Staphylococcus_aureus_V329|+|25643..26779|sip|-|integrase 
protein
Length=378

 Score =  217 bits (806),  Expect = 1e-57, Method: Compositional matrix adjust.
 Identities = 161/387 (42%), Positives = 247/387 (64%), Gaps = 31/387 (8%)

Query  1    MITKYTKKDGSTAYKLQAYLGVDQSTGKQVRTTRQGFKTIKQAKRAEVKLVEDFNRQGVW  60
            MI KYTKKDGSTAY + AYLG+D  T KQ RTTR+GFKT ++AK AE KL  + + +G  
Sbjct  1    MIKKYTKKDGSTAYMFVAYLGIDPITRKQKRTTRRGFKTEREAKLAEAKLQTEVQANGF-  59

Query  61   KNNDKTTFDEVAQLWLEQYANTVKASTYLTTLNYYNSKIATTIGHLPIAKITILKLQKLV  120
             NN+ TTF +V +LWLEQY +TV+ STY   +  +N+ I   + +++I  ITI   Q+++
Sbjct  60   LNNEITTFKQVYDLWLEQYKHTVRESTYQRVVTLFNTAILEHFNNVSIKSITIPYCQRVI  119

Query  121  NDLSKWSCYGLYISI------INRIFKYAVNLGVLDSNPMDKTIRAKIKHVPKSEQTENY  174
            N   KW+  + Y  +       + +F Y VNL ++  NP   T +++ K+ P+ E++  Y
Sbjct  120  N---KWN--DKYKDMKAIRIYTSNVFEYDVNLKIITENPFKHTKQPRKKETPQ-EDSYVY  173

Query  175  YTKDELLTFLEAVKNQESIELFAFYRLLSFGGLRFGEAVALNDADFDFKNKTVSITKTIA  234
            Y++DEL TFL  V  + ++  +A++R L+F G+R GE +AL   D++F +KT++I KT A
Sbjct  174  YSRDELQTFLSFV--EGNLVDYAIFRTLAFTGFRRGELMALTWNDINFEKKTITINKTCA  231

Query  235  NTKN-GLVIQKPKTKKSIREISLDDETMRIIKTY-INQSIKPLH--------GPFRLFNI  284
              +N   +IQ PKTK S R IS+DD T+ I+K   ++Q   +L         + F + N+
Sbjct  232  RGNNYKPIIQPPKTKSSYRTISVDDKTLSILKQWKVQQRTESLKFGHNALKKDQFVFTNV  291

Query  285  TANGAIYR------LDKIIKKNNFKRITHHGFRHTHASLLFEAGVPAKLTQQRLGHAKIS  338
            ++N  +Y       L ++ KK+NFK+I  HGFRH H SLLFEAG+  +  Q+RLGH+ I 
Sbjct  292  STNKRLYPEYCNKVLANVCKKHNFKQIKLHGFRHVHCSLLFEAGLTIQEVQDRLGHGDIK  351

Query  339  ITLDLYTHLSKTQKDEVANKFVDFIAI  365
             T+D+Y+H++  Q+D+VA+KF ++I +
Sbjct  352  TTMDIYAHVTEKQRDQVAEKFANYINF  378

26) M6_Spy0020 in NC_006086


> AY220730|25|G24|31616157|AAP55251.1|Staphylococcus_aureus_V329|+|25643..26779|sip|-|integrase 
protein
Length=378

 Score =  208 bits (775),  Expect = 3e-55, Method: Compositional matrix adjust.
 Identities = 158/381 (42%), Positives = 244/381 (65%), Gaps = 22/381 (5%)

Query  1    MIEKYTKKDGTTAYRLRAYLGVDPMTGKQVRTTRQGFKTEREAKRTEVKLVDDFQRQGAW  60
            MI KYTKKDG+TAY + AYLG+DP+T KQ RTTR+GFKTEREAK +E KL  + Q +G  
Sbjct  1    MIKKYTKKDGSTAYMFVAYLGIDPITRKQKRTTRRGFKTEREAKLAEAKLQTEVQANGF-  59

Query  61   KNNDKTTFDDAARLWFEQYKNTVKPSTFLVNQNYYKSTIKPHIGKSQISKITVMACQNLI  120
             NN+ TTF +   LW+EQYK+TV+ ST+      ++++I  H+ +  I  IT+  CQ +I
Sbjct  60   LNNEITTFKQVYDLWLEQYKHTVRESTYQRVVTLFNTAILEHFNNVSIKSITIPYCQRVI  119

Query  121  NHLAQ-YSACASYISVINRIFKFAVHLGIIENNPMDRTIRARCTYAHKEK--MFYSKEEL  177
            N   + Y    +     + +F + V+L II +NP  +T ++R   + +E   ++YS++EL
Sbjct  120  NKWNDKYKDMKAIRIYTSNVFEYDVNLKIITENPFKHTKQPRKKETPQEDSYVYYSRDEL  179

Query  178  LIFLDIVKKEESLEMLLIYRLLAYGGLRIGEAVALYDTDFDFTNNTISITKTLAQTKAGK  237
              FL +V  E +L    I+R LA+ G+R GE +AL   D++F ++TI+I KT A+ +  K
Sbjct  180  QTFLSFV--EGNLVDYAIFRTLAFTGFRRGELMALTWNDINFEKKTITINKTCARGNNYK  237

Query  238  -VIQNPKTKKSSRTISMDQETMRLAKEY-MRQSVRPL---HGSFR----VFNLLTSTVR-  287
             +IQ PKTK S RTIS+D+ T+ + K+  ++Q   +L   H +++    VF  +++  R 
Sbjct  238  PIIQPPKTKSSYRTISVDDKTLSILKQWKVQQRTESLKFGHNALKKDQFVFTNVSTNKRL  297

Query  288  ------RRLKRTVERHHLKKINPHGFRHTHASLLFEAGVPAKLAQERLGHAKISITMDLY  341
                  + L     +H++K+I+ HGFRH H SLLFEAG+  +  Q+RLGH+ I  TMD+Y
Sbjct  298  YPEYCNKVLANVCKKHNFKQIKLHGFRHVHCSLLFEAGLTIQEVQDRLGHGDIKTTMDIY  357

Query  342  THLSKNQTDNVAEKLADFIAI  362
            +H++ +Q D+VAEK+A++I +
Sbjct  358  AHVTEKQRDQVAEKFANYINF  378

27) int315.6 in NC_004070


> AY220730|25|G24|31616157|AAP55251.1|Staphylococcus_aureus_V329|+|25643..26779|sip|-|integrase 
protein
Length=378

 Score =  208 bits (775),  Expect = 3e-55, Method: Compositional matrix adjust.
 Identities = 158/381 (42%), Positives = 244/381 (65%), Gaps = 22/381 (5%)

Query  1    MIEKYTKKDGTTAYRLRAYLGVDPMTGKQVRTTRQGFKTEREAKRTEVKLVDDFQRQGAW  60
            MI KYTKKDG+TAY + AYLG+DP+T KQ RTTR+GFKTEREAK +E KL  + Q +G  
Sbjct  1    MIKKYTKKDGSTAYMFVAYLGIDPITRKQKRTTRRGFKTEREAKLAEAKLQTEVQANGF-  59

Query  61   KNNDKTTFDDAARLWFEQYKNTVKPSTFLVNQNYYKSTIKPHIGKSQISKITVMACQNLI  120
             NN+ TTF +   LW+EQYK+TV+ ST+      ++++I  H+ +  I  IT+  CQ +I
Sbjct  60   LNNEITTFKQVYDLWLEQYKHTVRESTYQRVVTLFNTAILEHFNNVSIKSITIPYCQRVI  119

Query  121  NHLAQ-YSACASYISVINRIFKFAVHLGIIENNPMDRTIRARCTYAHKEK--MFYSKEEL  177
            N   + Y    +     + +F + V+L II +NP  +T ++R   + +E   ++YS++EL
Sbjct  120  NKWNDKYKDMKAIRIYTSNVFEYDVNLKIITENPFKHTKQPRKKETPQEDSYVYYSRDEL  179

Query  178  LIFLDIVKKEESLEMLLIYRLLAYGGLRIGEAVALYDTDFDFTNNTISITKTLAQTKAGK  237
              FL +V  E +L    I+R LA+ G+R GE +AL   D++F ++TI+I KT A+ +  K
Sbjct  180  QTFLSFV--EGNLVDYAIFRTLAFTGFRRGELMALTWNDINFEKKTITINKTCARGNNYK  237

Query  238  -VIQNPKTKKSSRTISMDQETMRLAKEY-MRQSVRPL---HGSFR----VFNLLTSTVR-  287
             +IQ PKTK S RTIS+D+ T+ + K+  ++Q   +L   H +++    VF  +++  R 
Sbjct  238  PIIQPPKTKSSYRTISVDDKTLSILKQWKVQQRTESLKFGHNALKKDQFVFTNVSTNKRL  297

Query  288  ------RRLKRTVERHHLKKINPHGFRHTHASLLFEAGVPAKLAQERLGHAKISITMDLY  341
                  + L     +H++K+I+ HGFRH H SLLFEAG+  +  Q+RLGH+ I  TMD+Y
Sbjct  298  YPEYCNKVLANVCKKHNFKQIKLHGFRHVHCSLLFEAGLTIQEVQDRLGHGDIKTTMDIY  357

Query  342  THLSKNQTDNVAEKLADFIAI  362
            +H++ +Q D+VAEK+A++I +
Sbjct  358  AHVTEKQRDQVAEKFANYINF  378

28) SPs0408 in NC_004606


> AY220730|25|G24|31616157|AAP55251.1|Staphylococcus_aureus_V329|+|25643..26779|sip|-|integrase 
protein
Length=378

 Score =  208 bits (775),  Expect = 3e-55, Method: Compositional matrix adjust.
 Identities = 158/381 (42%), Positives = 244/381 (65%), Gaps = 22/381 (5%)

Query  1    MIEKYTKKDGTTAYRLRAYLGVDPMTGKQVRTTRQGFKTEREAKRTEVKLVDDFQRQGAW  60
            MI KYTKKDG+TAY + AYLG+DP+T KQ RTTR+GFKTEREAK +E KL  + Q +G  
Sbjct  1    MIKKYTKKDGSTAYMFVAYLGIDPITRKQKRTTRRGFKTEREAKLAEAKLQTEVQANGF-  59

Query  61   KNNDKTTFDDAARLWFEQYKNTVKPSTFLVNQNYYKSTIKPHIGKSQISKITVMACQNLI  120
             NN+ TTF +   LW+EQYK+TV+ ST+      ++++I  H+ +  I  IT+  CQ +I
Sbjct  60   LNNEITTFKQVYDLWLEQYKHTVRESTYQRVVTLFNTAILEHFNNVSIKSITIPYCQRVI  119

Query  121  NHLAQ-YSACASYISVINRIFKFAVHLGIIENNPMDRTIRARCTYAHKEK--MFYSKEEL  177
            N   + Y    +     + +F + V+L II +NP  +T ++R   + +E   ++YS++EL
Sbjct  120  NKWNDKYKDMKAIRIYTSNVFEYDVNLKIITENPFKHTKQPRKKETPQEDSYVYYSRDEL  179

Query  178  LIFLDIVKKEESLEMLLIYRLLAYGGLRIGEAVALYDTDFDFTNNTISITKTLAQTKAGK  237
              FL +V  E +L    I+R LA+ G+R GE +AL   D++F ++TI+I KT A+ +  K
Sbjct  180  QTFLSFV--EGNLVDYAIFRTLAFTGFRRGELMALTWNDINFEKKTITINKTCARGNNYK  237

Query  238  -VIQNPKTKKSSRTISMDQETMRLAKEY-MRQSVRPL---HGSFR----VFNLLTSTVR-  287
             +IQ PKTK S RTIS+D+ T+ + K+  ++Q   +L   H +++    VF  +++  R 
Sbjct  238  PIIQPPKTKSSYRTISVDDKTLSILKQWKVQQRTESLKFGHNALKKDQFVFTNVSTNKRL  297

Query  288  ------RRLKRTVERHHLKKINPHGFRHTHASLLFEAGVPAKLAQERLGHAKISITMDLY  341
                  + L     +H++K+I+ HGFRH H SLLFEAG+  +  Q+RLGH+ I  TMD+Y
Sbjct  298  YPEYCNKVLANVCKKHNFKQIKLHGFRHVHCSLLFEAGLTIQEVQDRLGHGDIKTTMDIY  357

Query  342  THLSKNQTDNVAEKLADFIAI  362
            +H++ +Q D+VAEK+A++I +
Sbjct  358  AHVTEKQRDQVAEKFANYINF  378

29) LSA0586 in NC_007576


> AY220730|25|G24|31616157|AAP55251.1|Staphylococcus_aureus_V329|+|25643..26779|sip|-|integrase 
protein
Length=378

 Score =  206 bits (765),  Expect = 2e-54, Method: Compositional matrix adjust.
 Identities = 164/386 (43%), Positives = 250/386 (65%), Gaps = 13/386 (3%)

Query  4    IKKYTK-DNQEFYMFQAYLGINPQtgkekrttrrgfktrkeARLALSMLELQADSGQLDQ  62
            IKKYTK D    YMF AYLGI+P T K+KRTTRRGFKT +EA+LA + L+ + ++  + +
Sbjct  2    IKKYTKKDGSTAYMFVAYLGIDPITRKQKRTTRRGFKTEREAKLAEAKLQTEVQANGFLN  61

Query  63   QPINLTFEDVYQQWWAGYINTVRESTMYKQKKVFQNHILPAFGKYRIRTITTSQVQTTLN  122
            + I  TF +VY+ W   Y +TVREST  +   +F+  IL  F +  I++IT +  Q  +N
Sbjct  62   NEIT-TFKQVYDLWLEQYKHTVRESTYQRVVTLFNTAILEHFNNVSIKSITIPYCQRVIN  120

Query  123  KWFKQTDY-SFKPWFNYTSAIFKYAILQGYIKDNPCTRVTMPKKLD--KEDTLNFWDKDQ  179
            KW  +  Y   K+   YTS +F Y +    I +NP  +   P+K +  +ED+  +  +D+
Sbjct  121  KW--NDKYKDMKAIRIYTSNVFEYDVNLKIITENPFKHTKQPRKKETPQEDSYVYYSRDE  178

Query  180  LKTFFNGIDPVNDLEKYTLFRVLAFTGIRRGECLSLTWDDLNVQKATLDINKTLTHGDKG  239
            L+TF++ ++   +L  Y++FR LAFTG+RRGE ++LTW+D+N +K T+ INKT ++G++ 
Sbjct  179  LQTFLSFVE--GNLVDYAIFRTLAFTGFRRGELMALTWNDINFEKKTITINKTCARGNNY  236

Query  240  RLLIQPTKTKKGTRVISLDESTLLYLKKWHLEQRRMYLMLGYNINKSNQLIFATSKNTFK  299
            + +IQP KTK + R IS+D+ TL  LK+W ++QR   L +G N  K +Q++F+      K
Sbjct  237  KPIIQPPKTKSSYRTISVDDKTLSILKQWKVQQRTESLKFGHNALKKDQFVFTNVSTN-K  295

Query  300  SLNTPSKWLRALIDDANKSGANLPSITVHGFRHSHASALFSAGASIKEVQERLGHEDAQT  359
             L  P    + L +  +K   N+  I +HGFRH H S LF AG +I+EVQ+RLGH D +T
Sbjct  296  RLY-PEYCNKVLANVCKKH--NFKQIKLHGFRHVHCSLLFEAGLTIQEVQDRLGHGDIKT  352

Query  360  TLNIYTHVTEKQGQEAVQKLVNFLNF  385
            T++IY+HVTEKQ ++  +K+ N++NF
Sbjct  353  TMDIYAHVTEKQRDQVAEKFANYINF  378

30) L897_07765 in NC_021807


> AY220730|25|G24|31616157|AAP55251.1|Staphylococcus_aureus_V329|+|25643..26779|sip|-|integrase 
protein
Length=378

 Score =  205 bits (762),  Expect = 3e-54, Method: Compositional matrix adjust.
 Identities = 158/386 (41%), Positives = 244/386 (64%), Gaps = 31/386 (8%)

Query  20   MIEKYTKKDGTTAYRLRAYLGVDPVTGKQVRTTRQGFKTEREAKRAEVKLIDDFQRQGAW  79
            MI KYTKKDG+TAY + AYLG+DP+T KQ RTTR+GFKTEREAK AE KL  + Q +G  
Sbjct  1    MIKKYTKKDGSTAYMFVAYLGIDPITRKQKRTTRRGFKTEREAKLAEAKLQTEVQANG-F  59

Query  80   KSNDKTTFDDVAKLWFEQYQNTVKPSTFLVNQNYYKTILKPHLGQLQMTKITVMICQKFV  139
             +N+ TTF +V  LW+EQY++TV+ ST+      ++T +  H+ ++ +  IT+  CQ+ +
Sbjct  60   LNNEITTFKQVYDLWLEQYKHTVRESTYQRVVTLFNTAILEHFNNVSIKSITIPYCQRVI  119

Query  140  NCLS-RYSGYTLYLSLANRIFKFAVNLGIIDNNPMNKTLRSKCTYKNVDTLTKKY--YTK  196
            N  + +Y +       ++ +F + VNL II +NP + T +++   K+       Y  Y++
Sbjct  120  NKWNDKYKDMKAIRIYTSNVFEYDVNLKIITENPFKHTKQPR---KKETPQEDSYVYYSR  176

Query  197  EELNTFLRLVEAEETLEMRLIYRLLSYGGFRIGELMALKDTDFEFHNNTISITKTIA---  253
            +EL+TFL +VE++  L    I+R L++ GFR GELMAL   D++F+++TI+I KT A   
Sbjct  177  DELQTFLSFVEGN--LVDYAIFRTLAFTGFRRGELMALTWNDINFEKKTITINKTCARGN  234

Query  254  -YTKEGWAVQSPKTKKSTRAISMDAETMSLAKLY-IKQSIKPL---HGSFK--LFNFSCD  306
             Y      +Q+PKTK S R+IS+D  T+S+ K   ++Q   +L   H ++K   F F+  
Sbjct  235  NYKP---IIQPPKTKSSYRTISVDDKTLSILKQWKVQQRTESLKFGHNALKKDQFVFTNV  291

Query  307  TVRNRL---------DKLILKHGLKRITPHGFRHTHASLLFEAGIPAKIAQERLGHAKIA  357
            +  +RL          ++  KH +K+I  HGFRH H SLLFEAG+  +  Q+RLGH+ I 
Sbjct  292  STNKRLYPEYCNKVLANVCKKHNFKQIKLHGFRHVHCSLLFEAGLTIQEVQDRLGHGDIK  351

Query  358  ITMDLYTHLSKKSKDDVADKLAELVA  383
             TMD+Y+H++ K +D+VA+K+A+ + 
Sbjct  352  TTMDIYAHVTEKQRDQVAEKFANYIN  377

31) int1 in NC_008022


> AY220730|25|G24|31616157|AAP55251.1|Staphylococcus_aureus_V329|+|25643..26779|sip|-|integrase 
protein
Length=378

 Score =  205 bits (761),  Expect = 4e-54, Method: Compositional matrix adjust.
 Identities = 159/387 (42%), Positives = 243/387 (63%), Gaps = 31/387 (8%)

Query  21   MIEKYTKKDGTTAYRLRAYLGVDPVTGKQVRTTRQGFKTEREAKRAEVKLIDDFQRQGAW  80
            MI KYTKKDG+TAY + AYLG+DP+T KQ RTTR+GFKTEREAK AE KL  + Q +G  
Sbjct  1    MIKKYTKKDGSTAYMFVAYLGIDPITRKQKRTTRRGFKTEREAKLAEAKLQTEVQANG-F  59

Query  81   KSNDKTTFDDVAKLWFEQYQNTVKPSTFLVNQNYYKTILKPHLGQLQMTKITVMICQKFV  140
             +N+ TTF +V  LW+EQY++TV+ ST+      ++T +  H+ ++ +  IT+  CQ+ +
Sbjct  60   LNNEITTFKQVYDLWLEQYKHTVRESTYQRVVTLFNTAILEHFNNVSIKSITIPYCQRVI  119

Query  141  NCLS-RYSGYTLYLSLANRIFKFAVNLGIIDNNPMNKTLRSKCTYKNVDTLTKKY--YTK  197
            N  + +Y +       ++ +F + VNL II +NP + T +++   K+       Y  Y++
Sbjct  120  NKWNDKYKDMKAIRIYTSNVFEYDVNLKIITENPFKHTKQPR---KKETPQEDSYVYYSR  176

Query  198  EELNTFLRLVEAEETLEMRLIYRLLSYGGFRIGELIALKDTDFDFRNNTISITKTIA---  254
            +EL+TFL +VE++  L    I+R L++ GFR GEL+AL   D++F ++TI+I KT A   
Sbjct  177  DELQTFLSFVEGN--LVDYAIFRTLAFTGFRRGELMALTWNDINFEKKTITINKTCARGN  234

Query  255  -YTKEGWAVQSPKTKKSNRTISMDAETMSLAKLY-IKQSIKPL---HGSFK--LFNFASD  307
             Y      +Q+PKTK S RTIS+D  T+S+ K   ++Q   +L   H ++K   F F++ 
Sbjct  235  NYKP---IIQPPKTKSSYRTISVDDKTLSILKQWKVQQRTESLKFGHNALKKDQFVFTNV  291

Query  308  TVRKRL---------DRFILKHGLKRITPHGFRHTHASLLFEAGIPAKIAQERLGHAKIA  358
            +  KRL              KH +K+I  HGFRH H SLLFEAG+  +  Q+RLGH+ I 
Sbjct  292  STNKRLYPEYCNKVLANVCKKHNFKQIKLHGFRHVHCSLLFEAGLTIQEVQDRLGHGDIK  351

Query  359  ITMDLYTHLSKKSKDNVADKLAELVAI  385
             TMD+Y+H++ K +D+VA+K+A+ + +
Sbjct  352  TTMDIYAHVTEKQRDQVAEKFANYINF  378

32) int315.4 in NC_004070


> AY220730|25|G24|31616157|AAP55251.1|Staphylococcus_aureus_V329|+|25643..26779|sip|-|integrase 
protein
Length=378

 Score =  205 bits (761),  Expect = 4e-54, Method: Compositional matrix adjust.
 Identities = 159/387 (42%), Positives = 243/387 (63%), Gaps = 31/387 (8%)

Query  20   MIEKYTKKDGTTAYRLRAYLGVDPVTGKQVRTTRQGFKTEREAKRAEVKLIDDFQRQGAW  79
            MI KYTKKDG+TAY + AYLG+DP+T KQ RTTR+GFKTEREAK AE KL  + Q +G  
Sbjct  1    MIKKYTKKDGSTAYMFVAYLGIDPITRKQKRTTRRGFKTEREAKLAEAKLQTEVQANG-F  59

Query  80   KSNDKTTFDDVAKLWFEQYQNTVKPSTFLVNQNYYKTILKPHLGQLQMTKITVMICQKFV  139
             +N+ TTF +V  LW+EQY++TV+ ST+      ++T +  H+ ++ +  IT+  CQ+ +
Sbjct  60   LNNEITTFKQVYDLWLEQYKHTVRESTYQRVVTLFNTAILEHFNNVSIKSITIPYCQRVI  119

Query  140  NCLS-RYSGYTLYLSLANRIFKFAVNLGIIDNNPMNKTLRSKCTYKNVDTLTKKY--YTK  196
            N  + +Y +       ++ +F + VNL II +NP + T +++   K+       Y  Y++
Sbjct  120  NKWNDKYKDMKAIRIYTSNVFEYDVNLKIITENPFKHTKQPR---KKETPQEDSYVYYSR  176

Query  197  EELNTFLRLVEAEETLEMRLIYRLLSYGGFRIGELIALKDTDFDFRNNTISITKTIA---  253
            +EL+TFL +VE++  L    I+R L++ GFR GEL+AL   D++F ++TI+I KT A   
Sbjct  177  DELQTFLSFVEGN--LVDYAIFRTLAFTGFRRGELMALTWNDINFEKKTITINKTCARGN  234

Query  254  -YTKEGWAVQSPKTKKSNRTISMDAETMSLAKLY-IKQSIKPL---HGSFK--LFNFASD  306
             Y      +Q+PKTK S RTIS+D  T+S+ K   ++Q   +L   H ++K   F F++ 
Sbjct  235  NYKP---IIQPPKTKSSYRTISVDDKTLSILKQWKVQQRTESLKFGHNALKKDQFVFTNV  291

Query  307  TVRKRL---------DRFILKHGLKRITPHGFRHTHASLLFEAGIPAKIAQERLGHAKIA  357
            +  KRL              KH +K+I  HGFRH H SLLFEAG+  +  Q+RLGH+ I 
Sbjct  292  STNKRLYPEYCNKVLANVCKKHNFKQIKLHGFRHVHCSLLFEAGLTIQEVQDRLGHGDIK  351

Query  358  ITMDLYTHLSKKSKDNVADKLAELVAI  384
             TMD+Y+H++ K +D+VA+K+A+ + +
Sbjct  352  TTMDIYAHVTEKQRDQVAEKFANYINF  378

33) M28_Spy1285 in NC_007296


> AY220730|25|G24|31616157|AAP55251.1|Staphylococcus_aureus_V329|+|25643..26779|sip|-|integrase 
protein
Length=378

 Score =  205 bits (761),  Expect = 4e-54, Method: Compositional matrix adjust.
 Identities = 159/387 (42%), Positives = 243/387 (63%), Gaps = 31/387 (8%)

Query  21   MIEKYTKKDGTTAYRLRAYLGVDPVTGKQVRTTRQGFKTEREAKRAEVKLIDDFQRQGAW  80
            MI KYTKKDG+TAY + AYLG+DP+T KQ RTTR+GFKTEREAK AE KL  + Q +G  
Sbjct  1    MIKKYTKKDGSTAYMFVAYLGIDPITRKQKRTTRRGFKTEREAKLAEAKLQTEVQANG-F  59

Query  81   KSNDKTTFDDVAKLWFEQYQNTVKPSTFLVNQNYYKTILKPHLGQLQMTKITVMICQKFV  140
             +N+ TTF +V  LW+EQY++TV+ ST+      ++T +  H+ ++ +  IT+  CQ+ +
Sbjct  60   LNNEITTFKQVYDLWLEQYKHTVRESTYQRVVTLFNTAILEHFNNVSIKSITIPYCQRVI  119

Query  141  NCLS-RYSGYTLYLSLANRIFKFAVNLGIIDNNPMNKTLRSKCTYKNVDTLTKKY--YTK  197
            N  + +Y +       ++ +F + VNL II +NP + T +++   K+       Y  Y++
Sbjct  120  NKWNDKYKDMKAIRIYTSNVFEYDVNLKIITENPFKHTKQPR---KKETPQEDSYVYYSR  176

Query  198  EELNTFLRLVEAEETLEMRLIYRLLSYGGFRIGELIALKDTDFDFRNNTISITKTIA---  254
            +EL+TFL +VE++  L    I+R L++ GFR GEL+AL   D++F ++TI+I KT A   
Sbjct  177  DELQTFLSFVEGN--LVDYAIFRTLAFTGFRRGELMALTWNDINFEKKTITINKTCARGN  234

Query  255  -YTKEGWAVQSPKTKKSNRTISMDAETMSLAKLY-IKQSIKPL---HGSFK--LFNFASD  307
             Y      +Q+PKTK S RTIS+D  T+S+ K   ++Q   +L   H ++K   F F++ 
Sbjct  235  NYKP---IIQPPKTKSSYRTISVDDKTLSILKQWKVQQRTESLKFGHNALKKDQFVFTNV  291

Query  308  TVRKRL---------DRFILKHGLKRITPHGFRHTHASLLFEAGIPAKIAQERLGHAKIA  358
            +  KRL              KH +K+I  HGFRH H SLLFEAG+  +  Q+RLGH+ I 
Sbjct  292  STNKRLYPEYCNKVLANVCKKHNFKQIKLHGFRHVHCSLLFEAGLTIQEVQDRLGHGDIK  351

Query  359  ITMDLYTHLSKKSKDNVADKLAELVAI  385
             TMD+Y+H++ K +D+VA+K+A+ + +
Sbjct  352  TTMDIYAHVTEKQRDQVAEKFANYINF  378

34) SPs0597 in NC_004606


> AY220730|25|G24|31616157|AAP55251.1|Staphylococcus_aureus_V329|+|25643..26779|sip|-|integrase 
protein
Length=378

 Score =  205 bits (761),  Expect = 4e-54, Method: Compositional matrix adjust.
 Identities = 159/387 (42%), Positives = 243/387 (63%), Gaps = 31/387 (8%)

Query  20   MIEKYTKKDGTTAYRLRAYLGVDPVTGKQVRTTRQGFKTEREAKRAEVKLIDDFQRQGAW  79
            MI KYTKKDG+TAY + AYLG+DP+T KQ RTTR+GFKTEREAK AE KL  + Q +G  
Sbjct  1    MIKKYTKKDGSTAYMFVAYLGIDPITRKQKRTTRRGFKTEREAKLAEAKLQTEVQANG-F  59

Query  80   KSNDKTTFDDVAKLWFEQYQNTVKPSTFLVNQNYYKTILKPHLGQLQMTKITVMICQKFV  139
             +N+ TTF +V  LW+EQY++TV+ ST+      ++T +  H+ ++ +  IT+  CQ+ +
Sbjct  60   LNNEITTFKQVYDLWLEQYKHTVRESTYQRVVTLFNTAILEHFNNVSIKSITIPYCQRVI  119

Query  140  NCLS-RYSGYTLYLSLANRIFKFAVNLGIIDNNPMNKTLRSKCTYKNVDTLTKKY--YTK  196
            N  + +Y +       ++ +F + VNL II +NP + T +++   K+       Y  Y++
Sbjct  120  NKWNDKYKDMKAIRIYTSNVFEYDVNLKIITENPFKHTKQPR---KKETPQEDSYVYYSR  176

Query  197  EELNTFLRLVEAEETLEMRLIYRLLSYGGFRIGELIALKDTDFDFRNNTISITKTIA---  253
            +EL+TFL +VE++  L    I+R L++ GFR GEL+AL   D++F ++TI+I KT A   
Sbjct  177  DELQTFLSFVEGN--LVDYAIFRTLAFTGFRRGELMALTWNDINFEKKTITINKTCARGN  234

Query  254  -YTKEGWAVQSPKTKKSNRTISMDAETMSLAKLY-IKQSIKPL---HGSFK--LFNFASD  306
             Y      +Q+PKTK S RTIS+D  T+S+ K   ++Q   +L   H ++K   F F++ 
Sbjct  235  NYKP---IIQPPKTKSSYRTISVDDKTLSILKQWKVQQRTESLKFGHNALKKDQFVFTNV  291

Query  307  TVRKRL---------DRFILKHGLKRITPHGFRHTHASLLFEAGIPAKIAQERLGHAKIA  357
            +  KRL              KH +K+I  HGFRH H SLLFEAG+  +  Q+RLGH+ I 
Sbjct  292  STNKRLYPEYCNKVLANVCKKHNFKQIKLHGFRHVHCSLLFEAGLTIQEVQDRLGHGDIK  351

Query  358  ITMDLYTHLSKKSKDNVADKLAELVAI  384
             TMD+Y+H++ K +D+VA+K+A+ + +
Sbjct  352  TTMDIYAHVTEKQRDQVAEKFANYINF  378

35) EHR_03625 in NC_018081


> AY220730|25|G24|31616157|AAP55251.1|Staphylococcus_aureus_V329|+|25643..26779|sip|-|integrase 
protein
Length=378

 Score =  203 bits (754),  Expect = 1e-53, Method: Compositional matrix adjust.
 Identities = 156/389 (41%), Positives = 251/389 (65%), Gaps = 19/389 (4%)

Query  4    IKPYKKQDGTINYMFDFYVGINPktgkkqkttrrgfkteeeaslalaelsllvateQYVP  63
            IK Y K+DG+  YMF  Y+GI+P T K+++TTRRGFKTE EA LA A L   V ++ ++ 
Sbjct  2    IKKYTKKDGSTAYMFVAYLGIDPITRKQKRTTRRGFKTEREAKLAEAKLQTEVQANGFLN  61

Query  64   KKHHTFNEIFTLWYKQYCNLVKESTAVTAKCEFKYAILPKFQEMRIQDITPIYCQQIVNE  123
            +   TF++++ LW  QY + V+EST       F+ AIL  F+++ I+ IT  YCQ+++N 
Sbjct  62   NEITTFKQVYDLWLEQYKHTVRESTYQRVVTLFNTAILEHFNNVSIKSITIPYCQRVINK  121

Query  124  WYKDKPKRASRFIYYFNRVMEHAMFLELIYQNPMANVKKTVTNLNLNHYEEFSNFFTKEE  183
            W +DK K    +  Y + V E  + L +I +NP  + K+   + +  + + +  +++++E
Sbjct  122  W-NDKYKDMKAIRIYTSNVFEYDVNLKIITENPFKHTKQPRKK-ETPQEDSYV-YYSRDE  178

Query  184  LIEFLRFTKENFDSERYAFFRTLAFTGLRKGEAFALTWEDVNFDEKYLEVTKTVAKGDRN  243
            L  FL F   N+    YA+FRTLAFTG+R+GE  ALTW+D+NF+ K + + KT A+G+  
Sbjct  179  LQTFLSFVEGNLVD--YAIFRTLAFTGFRRGELMALTWNDINFEKKTITINKTCARGNNY  236

Query  244  KILIHPPKTKAGFRRISLDNATLESLKTWREKQ---AIKFGLPKINPNQIIFSN---YKN  297
            K +I+PPKTK+++R IS+D+ TL  LK W+ +Q   ++KFG   ++ +Q++F+N    K 
Sbjct  237  KPIIQPPKTKSSYRTISVDDKTLSILKQWKVQQRTESLKFGHNALKKDQFVFTNVSTNKR  296

Query  298  TYLESGITKEWFLTIQRLYRKKTGKEIKTITMHGFRHTHASLLYKANIPIKEAQERLGHS  357
             Y E          +  + +K   K+IK   +HGFRH H SLL+ A + I+E Q+RLGH+
Sbjct  297  LYPEYCNK-----VLANVCKKHNFKQIK---LHGFRHVHCSLLFEAGLTIQEVQDRLGHG  348

Query  358  NVKTTLNIYTHLSKDQRDKTANRFAEFMN  386
            ++KTT++IY+H++  QRD+ A++FA+++N
Sbjct  349  DIKTTMDIYAHVTEKQRDQVAEKFANYIN  377

36) SAIL_6830 in NC_021507


> AY220730|25|G24|31616157|AAP55251.1|Staphylococcus_aureus_V329|+|25643..26779|sip|-|integrase 
protein
Length=378

 Score =  203 bits (753),  Expect = 2e-53, Method: Compositional matrix adjust.
 Identities = 160/386 (42%), Positives = 241/386 (63%), Gaps = 31/386 (8%)

Query  1    MIEKYTKKDGTTAYRLRAYLGVDPMTGKQVRTTRQGFKTEREAKRAEVKLIDDFQRQGAW  60
            MI KYTKKDG+TAY + AYLG+DP+T KQ RTTR+GFKTEREAK AE KL  + Q +G  
Sbjct  1    MIKKYTKKDGSTAYMFVAYLGIDPITRKQKRTTRRGFKTEREAKLAEAKLQTEVQANG-F  59

Query  61   KSNDKTTFNDVAKLWFEQYQNTVKPSTFLVNQNYYKTILKPHLGQLQMTKITVMICQKFV  120
             +N+ TTF++V  LW+EQY++TV+ ST+      ++T +  H+ ++ +  IT+  CQ+ +
Sbjct  60   LNNEITTFKQVYDLWLEQYKHTVRESTYQRVVTLFNTAILEHFNNVSIKSITIPYCQRVI  119

Query  121  NCLS-RYSGYTLYLSLANRIFKFAVNLGIIDSNPMSKTLRSKCTYKNVDTLTKKY--YTK  177
            N  + +Y +       ++ +F + VNL II  NP   T +++   K+       Y  Y++
Sbjct  120  NKWNDKYKDMKAIRIYTSNVFEYDVNLKIITENPFKHTKQPR---KKETPQEDSYVYYSR  176

Query  178  EELNTFLRIVEAEESLEMRLIYRLLSYGGFRIGELMALKDTDFEFRNNTISITKTIA---  234
            +EL+TFL +VE++  L    I+R L++ GFR GELMAL   D++F ++TI+I KT A   
Sbjct  177  DELQTFLSFVEGN--LVDYAIFRTLAFTGFRRGELMALTWNDINFEKKTITINKTCARGN  234

Query  235  -YTKEGWAVQSPKTKKSNRTISMDAETMSLAKLY-IKQSIKPL---HGSFK--LFNFACD  287
             Y      +Q+PKTK S RTIS+D  T+S+ K   ++Q   +L   H ++K   F F+  
Sbjct  235  NYKP---IIQPPKTKSSYRTISVDDKTLSILKQWKVQQRTESLKFGHNALKKDQFVFTNV  291

Query  288  TVRKRL---------DKFILKHGLKRITPHGFRHTHASLLFEAGIPAKIAQERLGHAKIA  338
            +  KRL          +   KH +K+I  HGFRH H SLLFEAG+  +  Q+RLGH+ I 
Sbjct  292  STNKRLYPEYCNKVLANVCKKHNFKQIKLHGFRHVHCSLLFEAGLTIQEVQDRLGHGDIK  351

Query  339  ITMDLYTHLSKKSKDDVADKLAELVA  364
             TMD+Y+H++ K +D+VA+K+A+ + 
Sbjct  352  TTMDIYAHVTEKQRDQVAEKFANYIN  377

37) MSA_7080 in NC_021486


> AY220730|25|G24|31616157|AAP55251.1|Staphylococcus_aureus_V329|+|25643..26779|sip|-|integrase 
protein
Length=378

 Score =  202 bits (751),  Expect = 2e-53, Method: Compositional matrix adjust.
 Identities = 159/386 (42%), Positives = 240/386 (63%), Gaps = 31/386 (8%)

Query  20   MIEKYTKKDGTIAYRLRAYLGVDPMTGKQVRTTRQGFKTEREAKRAEVKLIDDFQRQGAW  79
            MI KYTKKDG+ AY + AYLG+DP+T KQ RTTR+GFKTEREAK AE KL  + Q +G  
Sbjct  1    MIKKYTKKDGSTAYMFVAYLGIDPITRKQKRTTRRGFKTEREAKLAEAKLQTEVQANG-F  59

Query  80   KSNDKTTFNDVAKLWFEQYQNTVKPSTFLVNQNYYKTILKPHLGQLQMTKITVMICQKFV  139
             +N+ TTF++V  LW+EQY++TV+ ST+      ++T +  H+ ++ +  IT+  CQ+ +
Sbjct  60   LNNEITTFKQVYDLWLEQYKHTVRESTYQRVVTLFNTAILEHFNNVSIKSITIPYCQRVI  119

Query  140  NCLS-RYSGYTLYLSLANRIFKFAVNLGIIDSNPMSKTLRSKCTYKNVDTLTKKY--YTK  196
            N  + +Y +       ++ +F + VNL II  NP   T +++   K+       Y  Y++
Sbjct  120  NKWNDKYKDMKAIRIYTSNVFEYDVNLKIITENPFKHTKQPR---KKETPQEDSYVYYSR  176

Query  197  EELNTFLRIVEAEESLEMRLIYRLLSYGGFRIGELMALKDTDFEFRNNTISITKTIA---  253
            +EL+TFL +VE++  L    I+R L++ GFR GELMAL   D++F ++TI+I KT A   
Sbjct  177  DELQTFLSFVEGN--LVDYAIFRTLAFTGFRRGELMALTWNDINFEKKTITINKTCARGN  234

Query  254  -YTKEGWAVQSPKTKKSNRTISMDAETMSLAKLY-IKQSIKPL---HGSFK--LFNFACD  306
             Y      +Q+PKTK S RTIS+D  T+S+ K   ++Q   +L   H ++K   F F+  
Sbjct  235  NYKP---IIQPPKTKSSYRTISVDDKTLSILKQWKVQQRTESLKFGHNALKKDQFVFTNV  291

Query  307  TVRKRL---------DKFILKHGLKRITPHGFRHTHASLLFEAGIPAKIAQERLGHAKIA  357
            +  KRL          +   KH +K+I  HGFRH H SLLFEAG+  +  Q+RLGH+ I 
Sbjct  292  STNKRLYPEYCNKVLANVCKKHNFKQIKLHGFRHVHCSLLFEAGLTIQEVQDRLGHGDIK  351

Query  358  ITMDLYTHLSKKSKDDVADKLAELVA  383
             TMD+Y+H++ K +D+VA+K+A+ + 
Sbjct  352  TTMDIYAHVTEKQRDQVAEKFANYIN  377