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PAthogenisity Island DataBase (PAI DB)

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Homologs of api22 gene of AJ627388

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) YpsIP31758_3724
( YP_001402678.1 )

DNA binding protein

NC_009708
(Yersinia pseudotuberculosis IP 31758)

4e-51

2) YE3496A
( YP_001007657.1 )

putative DNA-binding protein

NC_008800
(Yersinia enterocolitica 8081)

3e-47

3) Dda3937_04485
( YP_003881778.1 )

hypothetical protein

NC_014500
(Dickeya dadantii 3937)

6e-23

4) Dd586_0878
( YP_003332469.1 )

XRE family transcriptional regulator

NC_013592
(Dickeya dadantii Ech586)

8e-23

5) Dda3937_03632
( YP_003881777.1 )

hypothetical protein

NC_014500
(Dickeya dadantii 3937)

7e-22

6) Dd586_0877
( YP_003332468.1 )

XRE family transcriptional regulator

NC_013592
(Dickeya dadantii Ech586)

7e-22

7) Dd586_3769
( YP_003335305.1 )

XRE family transcriptional regulator

NC_013592
(Dickeya dadantii Ech586)

4e-21

8) Dd703_3225
( YP_002988810.1 )

XRE family transcriptional regulator

NC_012880
(Dickeya dadantii Ech703)

3e-19

9) SARI_03130
( YP_001572112.1 )

hypothetical protein

NC_010067
(Salmonella enterica RSK2980)

2e-16

10) hipB1
( NP_995417.1 )

putative transcriptional regulator

NC_005814
(Yersinia pestis 91001)

2e-15

11) XNC1_1745
( YP_003711991.1 )

DNA binding protein

NC_014228
(Xenorhabdus nematophila ATCC 19061)

4e-15

12) Dda3937_01732
( YP_003881594.1 )

hypothetical protein

NC_014500
(Dickeya dadantii 3937)

4e-13

• Sequence Alignments

1) YpsIP31758_3724 in NC_009708


> AJ627388|25|G24|49658870|CAF28496.1|Yersinia_pseudotuberculosis_32777|-|22485..22841|api22|-|putative 
DNA binding protein
Length=118

 Score =  193 bits (718),  Expect = 4e-51, Method: Compositional matrix adjust.
 Identities = 117/118 (99%), Positives = 117/118 (99%), Gaps = 0/118 (0%)

Query  1    MNPERLKSARKTAKLSQEKLGVMAGIDEATARSRVSQYEKGFHTPSFELVKKFAMILNVP  60
            MNPERLKSARKTAKLSQEKLGVMAGIDEATARSRVSQYEKGFHTPSFELVKKFAMILNVP
Sbjct  1    MNPERLKSARKTAKLSQEKLGVMAGIDEATARSRVSQYEKGFHTPSFELVKKFAMILNVP  60

Query  61   ECYFYIVDDVFAAAVLQMYHTHQVPFLQHPDYEKLKQAEKLVDQLQKLIVELTNNSLR  118
            ECYFYIVDDVFAAAVLQMY THQVPFLQHPDYEKLKQAEKLVDQLQKLIVELTNNSLR
Sbjct  61   ECYFYIVDDVFAAAVLQMYYTHQVPFLQHPDYEKLKQAEKLVDQLQKLIVELTNNSLR  118

2) YE3496A in NC_008800


> AJ627388|25|G24|49658870|CAF28496.1|Yersinia_pseudotuberculosis_32777|-|22485..22841|api22|-|putative 
DNA binding protein
Length=118

 Score =  180 bits (668),  Expect = 3e-47, Method: Compositional matrix adjust.
 Identities = 104/118 (89%), Positives = 114/118 (97%), Gaps = 0/118 (0%)

Query  1    MNPERLKSARKTAKLSQEKLGVLAGIDEATARSRVSQYEKGFHTPSFDLIKKFAVILNVP  60
            MNPERLKSARKTAKLSQEKLGV+AGIDEATARSRVSQYEKGFHTPSF+L+KKFA+ILNVP
Sbjct  1    MNPERLKSARKTAKLSQEKLGVMAGIDEATARSRVSQYEKGFHTPSFELVKKFAMILNVP  60

Query  61   ECYFYIVDDVFAEAVLEMYHTHQMPYLQHPDYEKLKQAEKLVEQLQKLIHDLTNKSHR  118
            ECYFYIVDDVFA AVL+MY THQ+P+LQHPDYEKLKQAEKLV+QLQKLI +LTN+S R
Sbjct  61   ECYFYIVDDVFAAAVLQMYYTHQVPFLQHPDYEKLKQAEKLVDQLQKLIVELTNNSLR  118

3) Dda3937_04485 in NC_014500


> AJ627388|25|G24|49658870|CAF28496.1|Yersinia_pseudotuberculosis_32777|-|22485..22841|api22|-|putative 
DNA binding protein
Length=118

 Score =  100 bits (362),  Expect = 6e-23, Method: Compositional matrix adjust.
 Identities = 54/83 (66%), Positives = 66/83 (80%), Gaps = 0/83 (0%)

Query  1   MLPARLKTARLRADLTQEKLGVLAGIEEETARSRVSQYEGGIHRPTFEMMCAFAKVLNVP  60
           M P RLK+AR  A L+QEKLGV+AGI+E TARSRVSQYE G+H P+FE++  FA +LNVP
Sbjct  1   MNPERLKSARKTAKLSQEKLGVMAGIDEATARSRVSQYEKGFHTPSFELVKKFAMILNVP  60

Query  61  ECYFYTVNDDFAEMVLELYLKHQ  83
           ECYFY V+D FA  VL++Y  HQ
Sbjct  61  ECYFYIVDDVFAAAVLQMYYTHQ  83

4) Dd586_0878 in NC_013592


> AJ627388|25|G24|49658870|CAF28496.1|Yersinia_pseudotuberculosis_32777|-|22485..22841|api22|-|putative 
DNA binding protein
Length=118

 Score =   99 bits (360),  Expect = 8e-23, Method: Compositional matrix adjust.
 Identities = 53/83 (64%), Positives = 66/83 (80%), Gaps = 0/83 (0%)

Query  1   MLPARLKTARLRADLTQEKLGVLAGIEEETARSRVSQYEGGIHRPTFEMMCAFAKVLNVP  60
           M P RLK+AR  A L+QEKLGV+AGI+E TARSRVSQYE G+H P+FE++  FA +LNVP
Sbjct  1   MNPERLKSARKTAKLSQEKLGVMAGIDEATARSRVSQYEKGFHTPSFELVKKFAMILNVP  60

Query  61  ECYFYTVNDDFADMILELYLKHQ  83
           ECYFY V+D FA  +L++Y  HQ
Sbjct  61  ECYFYIVDDVFAAAVLQMYYTHQ  83

5) Dda3937_03632 in NC_014500


> AJ627388|25|G24|49658870|CAF28496.1|Yersinia_pseudotuberculosis_32777|-|22485..22841|api22|-|putative 
DNA binding protein
Length=118

 Score = 96.8 bits (348),  Expect = 7e-22, Method: Compositional matrix adjust.
 Identities = 52/86 (61%), Positives = 67/86 (78%), Gaps = 0/86 (0%)

Query  1   MLPIRLKTARLQANLTQEKLGVLAGIEEATARSRISQYESGIHRPTFEMMCAFAKVLNVP  60
           M P RLK+AR  A+L+QEKLGV+AGI+EATARSR+SQYE G+H P+FE++  FA +LNVP
Sbjct  1   MNPERLKSARKTAKLSQEKLGVMAGIDEATARSRVSQYEKGFHTPSFELVKKFAMILNVP  60

Query  61  ECYFYTVDDDFAEIILKLHNGEMVQW  86
           ECYFY VDD FA  +L++   + V  
Sbjct  61  ECYFYIVDDVFAAAVLQMYYTHQVPF  86

6) Dd586_0877 in NC_013592


> AJ627388|25|G24|49658870|CAF28496.1|Yersinia_pseudotuberculosis_32777|-|22485..22841|api22|-|putative 
DNA binding protein
Length=118

 Score = 96.8 bits (348),  Expect = 7e-22, Method: Compositional matrix adjust.
 Identities = 52/86 (61%), Positives = 67/86 (78%), Gaps = 0/86 (0%)

Query  1   MLPIRLKTARLQANLTQEKLGVLAGIEEATARSRISQYESGIHRPTFEMMCAFAKVLNVP  60
           M P RLK+AR  A+L+QEKLGV+AGI+EATARSR+SQYE G+H P+FE++  FA +LNVP
Sbjct  1   MNPERLKSARKTAKLSQEKLGVMAGIDEATARSRVSQYEKGFHTPSFELVKKFAMILNVP  60

Query  61  ECYFYTVDDDFAEIILKLHNGEMVQW  86
           ECYFY VDD FA  +L++   + V  
Sbjct  61  ECYFYIVDDVFAAAVLQMYYTHQVPF  86

7) Dd586_3769 in NC_013592


> AJ627388|25|G24|49658870|CAF28496.1|Yersinia_pseudotuberculosis_32777|-|22485..22841|api22|-|putative 
DNA binding protein
Length=118

 Score = 94.1 bits (338),  Expect = 4e-21, Method: Compositional matrix adjust.
 Identities = 48/85 (57%), Positives = 67/85 (79%), Gaps = 0/85 (0%)

Query  1   MLPHRLKAARLMAGLSQERLGILAGIDEATASARMNQYERGIHTPDFELARRLAAVLHVP  60
           M P+RLK+AR  A LSQE+LG++AGIDEATA +R++QYE+G+HTP FEL +++A +L+VP
Sbjct  1   MNPERLKSARKTAKLSQEKLGVMAGIDEATARSRVSQYEKGFHTPSFELVKKFAMILNVP  60

Query  61  ACYFYTVEDDLAEMILSFYDTKENP  85
            CYFY V+D +A  +L  Y T + P
Sbjct  61  ECYFYIVDDVFAAAVLQMYYTHQVP  85

8) Dd703_3225 in NC_012880


> AJ627388|25|G24|49658870|CAF28496.1|Yersinia_pseudotuberculosis_32777|-|22485..22841|api22|-|putative 
DNA binding protein
Length=118

 Score = 88.1 bits (315),  Expect = 3e-19, Method: Compositional matrix adjust.
 Identities = 54/91 (60%), Positives = 66/91 (73%), Gaps = 0/91 (0%)

Query  1   MIPERLKNARLRANLTQEQLGVLAGIGEETAYSRLSQYESGTHTPSFKTVCAFAHALNVP  60
           M PERLK+AR  A+L+QE+LGV+AGI+E TA SR+SQYE G HTPSF  V  FA  LNVP
Sbjct  1   MNPERLKSARKTAKLSQEKLGVMAGIDEATARSRVSQYEKGFHTPSFELVKKFAMILNVP  60

Query  61  ESYFYTVDDSFAEAILTLYAGETVRWQRTPE  91
           E YFY VDD FA A+L +Y  + V   + P+
Sbjct  61  ECYFYIVDDVFAAAVLQMYYTHQVPFLQHPD  91

9) SARI_03130 in NC_010067


> AJ627388|25|G24|49658870|CAF28496.1|Yersinia_pseudotuberculosis_32777|-|22485..22841|api22|-|putative 
DNA binding protein
Length=118

 Score = 78.4 bits (278),  Expect = 2e-16, Method: Compositional matrix adjust.
 Identities = 44/86 (52%), Positives = 59/86 (69%), Gaps = 0/86 (0%)

Query  1   MIPKRLRIARELADMSQEDLAAAAGVSEETGSSRISHYEHGRHRPKFELVCQLARVLNVP  60
           M P RL+ AR  A +SQE L+  AG+ E T+ SR+S+YE G H P FELV ++A +LNVP
Sbjct  1   MNPERLKSARKTAKLSQEKLGVMAGIDEATARSRVSQYEKGFHTPSFELVKKFAMILNVP  60

Query  61  EGYFYTLDDSFAEAMLKLYAGEIVQW  86
           E YFY +DD FA A+L++Y  + V  
Sbjct  61  ECYFYIVDDVFAAAVLQMYYTHQVPF  86

10) hipB1 in NC_005814


> AJ627388|25|G24|49658870|CAF28496.1|Yersinia_pseudotuberculosis_32777|-|22485..22841|api22|-|putative 
DNA binding protein
Length=118

 Score = 75.5 bits (267),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 50/114 (44%), Positives = 79/114 (70%), Gaps = 2/114 (1%)

Query  1    MVPKRLKEAREAAGLSQEKLSELVGVEGVNPRSRMSNYEAGRFAPPFEFVCRVADVLGYP  60
            M P RLK AR +A LSQEKL+ + G++   +RSR+S+YE G  +P+FE+V + A +L  P
Sbjct  1    MNPERLKSARKTAKLSQEKLGVMAGIDEATARSRVSQYEKGFHTPSFELVKKFAMILNVP  60

Query  61   EYYFYIVNDVTAKLLLRMHRGEQ-NLHEDIEFEAKKMAEQL-EDARKLVAQLTE  112
            E YFYIV+DV A  +L+M   +Q  + ++ ++E  K AE+L ++ +KL+ +LT+
Sbjct  61   ECYFYIVDDVFAAAVLQMYYTHQVPFLQHPDYEKLKQAEKLVDQLQKLIVELTN  114

11) XNC1_1745 in NC_014228


> AJ627388|25|G24|49658870|CAF28496.1|Yersinia_pseudotuberculosis_32777|-|22485..22841|api22|-|putative 
DNA binding protein
Length=118

 Score = 74.4 bits (263),  Expect = 4e-15, Method: Compositional matrix adjust.
 Identities = 39/87 (45%), Positives = 61/87 (71%), Gaps = 1/87 (1%)

Query  1   MNKKRLSESRKALGLSQRELGEKLGLYDEDVAKATISRYERGLNAPAYSTVCQIANILKV  60
           MN  RL  +RK+  LSQ  LG   G+ DE  A++ +S+YE+G+++P++  V ++A IL+V
Sbjct  1   MNPERLKSARKTAKLSQEKLGVMAGI-DEATARSRVSQYEKGFHTPSFELVKKFAMILNV  59

Query  61  PPCYFYIDDDIFAEQVLKLYRKNNTPL  87
           P CYFYI DD+FA  VL++Y  ++ P+
Sbjct  60  PECYFYIVDDVFAAAVLQMYYTHQVPF  86

12) Dda3937_01732 in NC_014500


> AJ627388|25|G24|49658870|CAF28496.1|Yersinia_pseudotuberculosis_32777|-|22485..22841|api22|-|putative 
DNA binding protein
Length=118

 Score = 67.6 bits (237),  Expect = 4e-13, Method: Compositional matrix adjust.
 Identities = 42/84 (50%), Positives = 54/84 (65%), Gaps = 0/84 (0%)

Query  1   MIGKRLKLARVNAGLTQLELGCRAGLDEETASSRISQYEREVNEPDFGLVCQFAAVLDVP  60
           M   RLK AR  A L+Q  LG  AG+DE TA SR+SQYE+  + P F LV +FA +L+VP
Sbjct  1   MNPERLKSARKTAKLSQEKLGVMAGIDEATARSRVSQYEKGFHTPSFELVKKFAMILNVP  60

Query  61  EAYFYARDEELALIILQYHYHKKV  84
           E YFY  D+ +A  +LQ  Y  +V
Sbjct  61  ECYFYIVDDVFAAAVLQMYYTHQV  84