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Homologs of cap1D gene of U10927

487

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) SSP0063
( YP_300153.1 )

capsular polysaccharide biosynthesis protein

NC_007350
(Staphylococcus saprophyticus ATCC 15305)

0.0

2) capD
( YP_002635116.1 )

putative capsular polysaccharide synthesis enzyme

NC_012121
(Staphylococcus carnosus TM300)

0.0

3) SAMSHR1132_01260
( YP_005324648.1 )

capsular polysaccharide synthesis enzyme

NC_016941
(Staphylococcus aureus MSHR1132)

0.0

4) SLGD_00326
( YP_003470601.1 )

capsular polysaccharide synthesis enzyme Cap8D

NC_013893
(Staphylococcus lugdunensis HKU09-01)

0.0

5) SAAG_00635
( YP_008448148.1 )

polysaccharide biosynthesis protein CapD

NC_022113
(Staphylococcus aureus 55/2053)

0.0

6) capD
( YP_008167315.1 )

Capsular polysaccharide biosynthesis protein CapD

NC_021670
(Staphylococcus aureus Bmb9393)

0.0

7) SAT0131_00142
( YP_005751429.1 )

Polysaccharide biosynthesis protein CapD

NC_017347
(Staphylococcus aureus T0131)

0.0

8) capD
( YP_005730185.1 )

capsular polysaccharide synthesis enzyme

NC_017331
(Staphylococcus aureus TW20)

0.0

9) cap5D
( YP_005743524.1 )

capsular polysaccharide biosynthesis protein Cap5D

NC_017341
(Staphylococcus aureus JKD6008)

0.0

10) capD
( YP_039619.1 )

capsular polysaccharide synthesis enzyme

NC_002952
(Staphylococcus aureus MRSA252)

0.0

11) capD
( YP_005746428.1 )

polysaccharide biosynthesis protein CapD

NC_017342
(Staphylococcus aureus TCH60)

0.0

12) cap5D
( YP_185039.1 )

capsular polysaccharide biosynthesis protein Cap5D

NC_002951
(Staphylococcus aureus COL)

0.0

13) SAS0127
( YP_042249.1 )

capsular polysaccharide synthesis enzyme

NC_002953
(Staphylococcus aureus MSSA476)

0.0

14) cap8D
( NP_644942.1 )

capsular polysaccharide synthesis enzyme Cap8D

NC_003923
(Staphylococcus aureus MW2)

0.0

15) SAOUHSC_00117
( YP_498717.1 )

capsular polysaccharide biosynthesis protein Cap5D

NC_007795
(Staphylococcus aureus NCTC 8325)

0.0

16) SAVC_00530
( YP_005289707.1 )

polysaccharide biosynthesis protein CapD

NC_016912
(Staphylococcus aureus VC40)

0.0

17) MS7_0146
( YP_005756611.1 )

polysaccharide biosynthesis family protein

NC_017351
(Staphylococcus aureus 11819-97)

0.0

18) capD
( YP_008484173.1 )

capsular polysaccharide synthesis enzyme CapD

NC_022222
(Staphylococcus aureus 6850)

0.0

19) CA347_163
( YP_008127046.1 )

short chain dehydrogenase family protein

NC_021554
(Staphylococcus aureus CA-347)

0.0

20) SAOV_0099
( YP_005735617.1 )

capsular polysaccharide biosynthesis protein CapD

NC_017337
(Staphylococcus aureus ED133)

0.0

21) cap5D
( YP_005738302.1 )

capsular polysaccharide biosynthesis protein Cap5D

NC_017338
(Staphylococcus aureus JKD6159)

0.0

22) M013TW_0142
( YP_005296610.1 )

capsular polysaccharide synthesis enzyme Cap8D

NC_016928
(Staphylococcus aureus M013)

0.0

23) capD
( YP_001331133.1 )

polysaccharide biosynthesis protein CapD

NC_009641
(Staphylococcus aureus Newman)

0.0

24) SAPIG0166
( YP_005732976.1 )

capsular polysaccharide biosynthesis protein Cap5D

NC_017333
(Staphylococcus aureus ST398)

0.0

25) capD
( YP_005740902.1 )

Capsular polysaccharide synthesis enzyme Cap8D

NC_017340
(Staphylococcus aureus 04-02981)

0.0

26) capD
( YP_006708903.1 )

capsular polysaccharide synthesis enzyme

NC_018608
(Staphylococcus aureus 08BA02176)

0.0

27) ST398NM01_0166
( YP_006194313.1 )

UDP-D-quinovosamine 4-dehydrogenase

NC_017673
(Staphylococcus aureus 71193)

0.0

28) ECTR2_109
( YP_005748862.1 )

capsular polysaccharide biosynthesis protein capD

NC_017343
(Staphylococcus aureus ECT-R 2)

0.0

29) cap5D
( YP_003281073.1 )

capsular polysaccharide biosynthesis protein Cap5D

NC_013450
(Staphylococcus aureus ED98)

0.0

30) SaurJH1_0143
( YP_001315292.1 )

polysaccharide biosynthesis protein CapD

NC_009632
(Staphylococcus aureus JH1)

0.0

31) SaurJH9_0138
( YP_001245521.1 )

polysaccharide biosynthesis protein CapD

NC_009487
(Staphylococcus aureus JH9)

0.0

32) capD
( YP_005754136.1 )

capsular polysaccharide synthesis enzyme

NC_017349
(Staphylococcus aureus LGA251)

0.0

33) capD
( YP_001440741.1 )

capsular polysaccharide synthesis enzyme Cap5D

NC_009782
(Staphylococcus aureus Mu3)

0.0

34) capD
( NP_370676.1 )

capsular polysaccharide synthesis enzyme Cap5D

NC_002758
(Staphylococcus aureus Mu50)

0.0

35) capD
( NP_373389.1 )

capsular polysaccharide synthesis protein Cap5D

NC_002745
(Staphylococcus aureus N315)

0.0

36) SAI6T6_1001070
( YP_007582717.1 )

Polysaccharide biosynthesis protein CapD

NC_020536
(Staphylococcus aureus ST228)

0.0

37) SAI5S5_1001060
( YP_007620431.1 )

Polysaccharide biosynthesis protein CapD

NC_020566
(Staphylococcus aureus ST228)

0.0

38) SAI8T7_1001070
( YP_007622418.1 )

Polysaccharide biosynthesis protein CapD

NC_020568
(Staphylococcus aureus ST228)

0.0

39) SAI1T1_2001070
( YP_007576730.1 )

Polysaccharide biosynthesis protein CapD

NC_020529
(Staphylococcus aureus ST228 (isolate=10388))

0.0

40) SAI2T2_1001070
( YP_007618445.1 )

Polysaccharide biosynthesis protein CapD

NC_020564
(Staphylococcus aureus ST228 (isolate=10497))

0.0

41) SAI3T3_1001070
( YP_007578738.1 )

Polysaccharide biosynthesis protein CapD

NC_020532
(Staphylococcus aureus ST228 (isolate=15532))

0.0

42) SAI4T8_1001070
( YP_007580702.1 )

Polysaccharide biosynthesis protein CapD

NC_020533
(Staphylococcus aureus ST228 (isolate=16035))

0.0

43) SAI7S6_1001070
( YP_007584681.1 )

Polysaccharide biosynthesis protein CapD

NC_020537
(Staphylococcus aureus ST228 (isolate=18412))

0.0

44) SAKOR_00132
( YP_008490316.1 )

UDP-D-quinovosamine 4-dehydrogenase

NC_022226
(Staphylococcus aureus CN1)

0.0

45) capD
( YP_006236492.1 )

capsular polysaccharide synthesis enzyme

NC_017763
(Staphylococcus aureus HO 5096 0412)

0.0

46) capD
( YP_415606.1 )

capsular polysaccharide synthesis enzyme CapD

NC_007622
(Staphylococcus aureus RF122)

0.0

47) capD
( YP_252306.1 )

capsular polysaccharide biosynthesis protein CapD

NC_007168
(Staphylococcus haemolyticus JCSC1435)

0.0

48) capD
( YP_008586766.1 )

capsular polysaccharide synthesis enzyme

NC_022443
(Staphylococcus aureus SA40)

1e-179

49) capD
( YP_008584232.1 )

capsular polysaccharide synthesis enzyme

NC_022442
(Staphylococcus aureus SA957)

1e-179

50) MCCL_0670
( YP_002560073.1 )

capsular polysaccharide biosynthesis protein CapD

NC_011999
(Macrococcus caseolyticus JCSC5402)

6e-165

51) capD''
( YP_002635441.1 )

capsular polysaccharide synthesis enzyme CapD (fragment 2)

NC_012121
(Staphylococcus carnosus TM300)

6e-152

52) M493_17345
( REF_PRJNA208285:M493 )

hypothetical protein

NC_022080
(Geobacillus sp. JF8)

4e-148

53) BCAH187_A5448
( YP_002341337.1 )

caspsular polysaccharide biosynthesis protein

NC_011658
(Bacillus cereus AH187)

1e-146

54) BCN_5200
( YP_005107733.1 )

UDP-N-acetylglucosamine 4,6-dehydratase

NC_016771
(Bacillus cereus NC7401)

1e-146

55) BCK_09000
( YP_006595909.1 )

caspsular polysaccharide biosynthesis protein

NC_018491
(Bacillus cereus FRI-35)

6e-146

56) Bsel_3052
( YP_003701099.1 )

polysaccharide biosynthesis protein CapD

NC_014219
(Bacillus selenitireducens MLS10)

7e-146

57) BCE_5395
( NP_981687.1 )

caspsular polysaccharide biosynthesis protein

NC_003909
(Bacillus cereus ATCC 10987)

9e-146

58) YBT020_26290
( YP_005568898.1 )

caspsular polysaccharide biosynthesis protein

NC_017200
(Bacillus thuringiensis YBT-020)

1e-145

59) B1NLA3E_20955
( YP_007912428.1 )

capsular polysaccharide biosynthesis protein

NC_021171
(Bacillus sp. 1NLA3E)

1e-144

60) BCO26_0342
( YP_004567787.1 )

capsular polysaccharide biosynthesis protein

NC_015634
(Bacillus coagulans 2-6)

5e-144

61) BcerKBAB4_5070
( YP_001647844.1 )

polysaccharide biosynthesis protein CapD

NC_010184
(Bacillus weihenstephanensis KBAB4)

1e-143

62) BC5274
( NP_834937.1 )

UDP-N-acetylglucosamine 4,6-dehydratase

NC_004722
(Bacillus cereus ATCC 14579 )

8e-143

63) AXY_20090
( YP_006845903.1 )

polysaccharide biosynthesis protein

NC_018704
(Amphibacillus xylanus NBRC 15112)

2e-136

64) BH3718
( NP_244585.1 )

capsular polysaccharide biosynthesis

NC_002570
(Bacillus halodurans C-125)

1e-133

65) epsC
( YP_008079750.1 )

putative UDP-sugar epimerase EpsC

NC_021362
(Bacillus licheniformis 9945A)

9e-134

66) cpsD
( YP_003426273.1 )

capsular polysaccharide biosynthesis protein

NC_013791
(Bacillus pseudofirmus OF4)

1e-132

67) epsC
( YP_006714975.1 )

polysaccharide biosynthesis protein EpsC

NC_006322
(Bacillus licheniformis DSM 13)

1e-129

68) yveM
( YP_080780.1 )

capsular polysaccharide biosynthesis protein YveM

NC_006270
(Bacillus licheniformis DSM 13)

1e-129

69) BcerKBAB4_3403
( YP_001646205.1 )

polysaccharide biosynthesis protein CapD

NC_010184
(Bacillus weihenstephanensis KBAB4)

4e-129

70) OB2896
( NP_693818.1 )

capsular polysaccharide biosynthesis protein

NC_004193
(Oceanobacillus iheyensis HTE831)

2e-128

71) BPUM_3081
( YP_001488295.1 )

capsular polysaccharide biosynthesis protein

NC_009848
(Bacillus pumilus SAFR-032)

4e-128

72) B1NLA3E_04360
( YP_007909147.1 )

polysaccharide biosynthesis protein CapD

NC_021171
(Bacillus sp. 1NLA3E)

9e-127

73) Theco_3184
( YP_007214237.1 )

nucleoside-diphosphate sugar epimerase

NC_019897
(Thermobacillus composti KWC4)

3e-125

74) MC28_2861
( YP_006829682.1 )

translocation-enhancing protein TepA

NC_018693
(Bacillus thuringiensis MC28)

5e-123

75) BATR1942_15095
( YP_003974872.1 )

UDP-sugar epimerase

NC_014639
(Bacillus atrophaeus 1942)

1e-121

76) HBHAL_1964
( YP_006179602.1 )

capsular polysaccharide biosynthesis protein

NC_017668
(Halobacillus halophilus DSM 2266)

4e-121

77) epsC
( YP_003867720.1 )

UDP-sugar epimerase

NC_014479
(Bacillus subtilis W23)

5e-121

78) epsC
( YP_007428377.1 )

putative UDP-sugar epimerase

NC_020244
(Bacillus subtilis XF-1)

4e-120

79) epsC
( NP_391315.1 )

polysaccharide biosynthesis protein EpsC

NC_000964
(Bacillus subtilis 168)

4e-120

80) epsC
( YP_007535429.1 )

putative UDP-sugar epimerase EpsC

NC_020507
(Bacillus subtilis 6051-HGW)

4e-120

81) yveM
( YP_005562745.1 )

hypothetical protein

NC_017196
(Bacillus subtilis BEST195)

5e-120

82) BSn5_08105
( YP_004205272.1 )

putative UDP-sugar epimerase

NC_014976
(Bacillus subtilis BSn5)

5e-120

83) A7A1_2654
( YP_007208061.1 )

hypothetical protein

NC_019896
(Bacillus subtilis BSP1)

5e-120

84) yveM
( YP_005558444.1 )

exopolysaccharide biosynthesis YveM

NC_017195
(Bacillus subtilis RO-NN-1)

2e-119

85) yveM
( YP_004878974.1 )

exopolysaccharide biosynthesis protein YveM

NC_016047
(Bacillus subtilis TU-B-10)

2e-119

86) I653_16690
( YP_007664086.1 )

putative UDP-sugar epimerase

NC_020832
(subtilis subtilis BAB-1)

4e-119

87) epsC
( YP_007498751.1 )

Probable polysaccharide biosynthesis protein epsC

NC_020410
(Bacillus amyloliquefaciens UCMB5036)

9e-119

88) yveM
( YP_005131921.1 )

caspsular polysaccharide biosynthesis protein

NC_016784
(Bacillus amyloliquefaciens CAU B946)

1e-118

89) KSO_003295
( YP_007444037.1 )

caspsular polysaccharide biosynthesis protein

NC_020272
(Bacillus amyloliquefaciens IT-45)

1e-118

90) MY9_3480
( YP_006233268.1 )

EpsC

NC_017743
(Bacillus sp. JS)

2e-118

91) SGO_2024
( YP_001451272.1 )

extracellular polysaccharide biosynthesis

NC_009785
(Streptococcus gordonii Challis)

5e-118

92) epsC
( YP_001422727.1 )

hypothetical protein

NC_009725
(Bacillus amyloliquefaciens FZB42)

2e-117

93) epsC
( YP_008414276.1 )

putative UDP-sugar epimerase

NC_022075
(Bacillus amyloliquefaciens UCMB-5033)

2e-117

94) epsC
( YP_008422487.1 )

putative UDP-sugar epimerase

NC_022081
(Bacillus amyloliquefaciens UCMB5113)

2e-117

95) epsC
( YP_004375104.1 )

putative UDP-sugar epimerase

NC_015391
(Carnobacterium sp. 17-4)

2e-117

96) capD
( YP_001036136.1 )

Cps9E

NC_009009
(Streptococcus sanguinis SK36)

3e-117

97) epsC
( YP_005547331.1 )

UDP-sugar epimerase

NC_017190
(Bacillus amyloliquefaciens LL3)

3e-117

98) epsC
( YP_006330350.1 )

extracellular polysaccharide biosynthesis

NC_017912
(Bacillus amyloliquefaciens Y2)

3e-117

99) epsC
( YP_005422676.1 )

caspsular polysaccharide biosynthesis protein EpsC

NC_017061
(Bacillus amyloliquefaciens YAU B9601-Y2)

3e-117

100) B938_16225
( YP_007187921.1 )

hypothetical protein

NC_019842
(Bacillus amyloliquefaciens AS43.3)

4e-117

101) epsC
( YP_003921883.1 )

UDP-sugar epimerase

NC_014551
(Bacillus amyloliquefaciens DSM 7)

6e-117

102) epsC
( YP_005543134.1 )

UDP-sugar epimerase

NC_017188
(Bacillus amyloliquefaciens TA208)

1e-116

103) epsC
( YP_005551525.1 )

UDP-sugar epimerase

NC_017191
(Bacillus amyloliquefaciens XH7)

1e-116

104) epsC
( YP_006631542.1 )

UDP-sugar epimerase

NC_018520
(Bacillus subtilis QB928)

2e-114

105) Desor_5339
( YP_004973232.1 )

nucleoside-diphosphate sugar epimerase

NC_016584
(Desulfosporosinus orientis DSM 765)

5e-114

106) STP_0902
( YP_004479022.1 )

polysaccharide biosynthesis protein

NC_015558
(Streptococcus parauberis KCTC 11537)

5e-113

107) Desmer_4340
( YP_006624023.1 )

nucleoside-diphosphate sugar epimerase

NC_018515
(Desulfosporosinus meridiei DSM 13257)

7e-112

108) I872_09825
( YP_007924195.1 )

protein Cps9E

NC_021175
(Streptococcus oligofermentans AS 1.3089)

3e-111

109) Exig_2634
( YP_001815099.1 )

polysaccharide biosynthesis protein CapD

NC_010556
(Exiguobacterium sibiricum 255-15)

4e-111

110) SUB1039
( YP_002562363.1 )

polysaccharide biosynthesis protein

NC_012004
(Streptococcus uberis 0140J)

1e-110

111) Dtox_4081
( YP_003193378.1 )

polysaccharide biosynthesis protein CapD

NC_013216
(Desulfotomaculum acetoxidans DSM 771)

1e-110

112) EHR_08910
( YP_006487593.1 )

UDP-N-acetylglucosamine 4,6-dehydratase

NC_018081
(Enterococcus hirae ATCC 9790)

4e-110

113) DSY3347
( YP_519580.1 )

hypothetical protein

NC_007907
(Desulfitobacterium hafniense Y51)

4e-110

114) Desde_3866
( YP_006431926.1 )

nucleoside-diphosphate sugar epimerase

NC_018017
(Desulfitobacterium dehalogenans ATCC 51507)

5e-110

115) Desaci_4450
( YP_006468625.1 )

putative nucleoside-diphosphate sugar epimerase

NC_018068
(Desulfosporosinus acidiphilus SJ4)

6e-110

116) Desdi_3238
( YP_007222028.1 )

nucleoside-diphosphate sugar epimerase

NC_019903
(Desulfitobacterium dichloroeliminans LMG P-21439)

6e-110

117) Mahau_0321
( YP_004462359.1 )

polysaccharide biosynthesis protein CapD

NC_015520
(Mahella australiensis 50-1 BON)

7e-110

118) ECBG_00487
( YP_007752353.1 )

hypothetical protein

NC_020995
(Enterococcus casseliflavus EC20)

9e-110

119) cpsE
( YP_004558979.1 )

polysaccharide biosynthesis protein

NC_015600
(Streptococcus pasteurianus ATCC 43144)

5e-109

120) Dhaf_4505
( YP_002460942.1 )

polysaccharide biosynthesis protein CapD

NC_011830
(Desulfitobacterium hafniense DCB-2)

5e-109

121) TEH_03930
( YP_004885884.1 )

polysaccharide biosynthesis protein

NC_016052
(Tetragenococcus halophilus NBRC 12172)

1e-108

122) SSUD12_1366
( YP_006082900.1 )

Cps9E

NC_017621
(Streptococcus suis D12)

1e-107

123) Dtox_3994
( YP_003193309.1 )

polysaccharide biosynthesis protein CapD

NC_013216
(Desulfotomaculum acetoxidans DSM 771)

2e-107

124) EHR_10200
( YP_006487827.1 )

extracellular polysaccharide biosynthesis

NC_018081
(Enterococcus hirae ATCC 9790)

2e-107

125) K710_0836
( YP_008056550.1 )

CpsE

NC_021314
(Streptococcus iniae SF1)

4e-107

126) MPD5_1391
( YP_005320093.1 )

UDP-N-acetylglucosamine 4,6-dehydratase

NC_016938
(Melissococcus plutonius DAT561)

2e-106

127) SSUST3_0740
( YP_004401382.1 )

hypothetical protein

NC_015433
(Streptococcus suis ST3)

4e-106

128) SCIM_1578
( YP_006470478.1 )

protein Cps9E

NC_018073
(Streptococcus intermedius JTH08)

1e-105

129) A2cp1_4432
( YP_002494815.1 )

polysaccharide biosynthesis protein CapD

NC_011891
(Anaeromyxobacter dehalogenans 2CP-1)

2e-105

130) cps9E
( YP_008362766.1 )

Cps9E

NC_021904
(Lactobacillus plantarum ZJ316)

3e-105

131) Desku_1733
( YP_004517103.1 )

polysaccharide biosynthesis protein CapD

NC_015573
(Desulfotomaculum kuznetsovii DSM 6115)

3e-105

132) SIR_1783
( YP_008513685.1 )

extracellular polysaccharide biosynthesis

NC_022246
(Streptococcus intermedius B196)

4e-105

133) SSUD9_0745
( YP_006080218.1 )

Cps9E

NC_017620
(Streptococcus suis D9)

6e-105

134) NT01CX_1779
( YP_877852.1 )

polysaccharide biosynthesis family protein

NC_008593
(Clostridium novyi NT)

9e-105

135) Pjdr2_0353
( YP_003009120.1 )

polysaccharide biosynthesis protein CapD

NC_012914
(Paenibacillus sp. JDR-2)

2e-104

136) DCF50_p2698
( YP_006914686.1 )

polysaccharide biosynthesis protein CapD

NC_018867
(Dehalobacter sp. CF)

2e-104

137) AnaeK_4411
( YP_002136743.1 )

polysaccharide biosynthesis protein CapD

NC_011145
(Anaeromyxobacter sp. K)

3e-104

138) DHBDCA_p2687
( YP_006911699.1 )

polysaccharide biosynthesis protein CapD

NC_018866
(Dehalobacter sp. DCA)

3e-104

139) MPTP_0527
( YP_004455811.1 )

UDP-N-acetylglucosamine 4,6-dehydratase

NC_015516
(Melissococcus plutonius ATCC 35311)

4e-104

140) Cbei_4629
( YP_001311693.1 )

polysaccharide biosynthesis protein CapD

NC_009617
(Clostridium beijerinckii NCIMB 8052)

5e-103

141) Gbem_1633
( YP_002138447.1 )

NAD-dependent nucleoside diphosphate-sugar epimerase/dehydratase

NC_011146
(Geobacter bemidjiensis Bem)

1e-102

142) Clocl_1008
( YP_005045609.1 )

putative nucleoside-diphosphate sugar epimerase

NC_016627
(Clostridium clariflavum DSM 19732)

1e-102

143) capD
( YP_004326848.1 )

putative nucleoside-diphosphate sugar isomerase

NC_015291
(Streptococcus oralis Uo5)

2e-102

144) GM21_2582
( YP_003022380.1 )

polysaccharide biosynthesis protein CapD

NC_012918
(Geobacter sp. M21)

3e-102

145) Gmet_1338
( YP_006720305.1 )

NAD-dependent nucleoside diphosphate-sugar epimerase/dehydratase

NC_007517
(Geobacter metallireducens GS-15)

4e-102

146) Nther_2497
( YP_001918648.1 )

polysaccharide biosynthesis protein CapD

NC_010718
(Natranaerobius thermophilus JW/NM-WN-LF)

5e-102

147) M7W_1029
( YP_007393722.1 )

UDP-N-acetylglucosamine 4, 6-dehydratase

NC_020207
(Enterococcus faecium NRRL B-2354)

1e-101

148) CbC4_0991
( YP_004395668.1 )

exopolysaccharide biosynthesis protein

NC_015425
(Clostridium botulinum BKT015925)

2e-101

149) SPPN_01040
( YP_004767512.1 )

type 1 capsular polysaccharide biosynthesis protein CapD

NC_015875
(Streptococcus pseudopneumoniae IS7493)

3e-101

150) Amet_0277
( YP_001318169.1 )

polysaccharide biosynthesis protein CapD

NC_009633
(Alkaliphilus metalliredigens QYMF)

3e-101

151) epsC
( YP_007458354.1 )

putative polysaccharide biosynthesis protein EpsC

NC_020291
(Clostridium saccharoperbutylacetonicum N1-4(HMT))

3e-101

152) capD
( YP_815587.1 )

capsular polysaccharide biosynthesis protein

NC_008533
(Streptococcus pneumoniae D39)

1e-100

153) capD
( NP_357686.1 )

CapD protein, required for the biosynthesis of type 1 capsular polysaccharide

NC_003098
(Streptococcus pneumoniae R6)

1e-100

154) Desmer_4120
( YP_006623820.1 )

nucleoside-diphosphate sugar epimerase

NC_018515
(Desulfosporosinus meridiei DSM 13257)

1e-100

155) GM18_1462
( YP_004198206.1 )

polysaccharide biosynthesis protein CapD

NC_014973
(Geobacter sp. M18)

1e-100

156) GM18_1465
( YP_004198208.1 )

polysaccharide biosynthesis protein CapD

NC_014973
(Geobacter sp. M18)

1e-100

157) SELR_26940
( YP_005434425.1 )

putative polysaccharide biosynthesis protein

NC_017068
(Selenomonas ruminantium TAM6421)

1e-100

158) SP670_0173
( YP_003878355.1 )

type 1 capsular polysaccharide biosynthesis protein CapD

NC_014498
(Streptococcus pneumoniae 670-6B)

2e-100

159) SPNA45_01937
( YP_006702298.1 )

polysaccharide biosynthesis protein

NC_018594
(Streptococcus pneumoniae A45)

2e-100

160) SPN23F_01140
( YP_002510188.1 )

polysaccharide biosynthesis protein

NC_011900
(Streptococcus pneumoniae ATCC 700669)

2e-100

161) SPCG_0098
( YP_001834815.1 )

capsular polysaccharide biosynthesis protein

NC_010582
(Streptococcus pneumoniae CGSP14)

2e-100

162) SPH_0202
( YP_001693622.1 )

CapD protein, required for the biosynthesis of type 1 capsular polysaccharide

NC_010380
(Streptococcus pneumoniae Hungary19A-6)

2e-100

163) SPNINV200_00920
( YP_006065448.1 )

polysaccharide biosynthesis protein

NC_017593
(Streptococcus pneumoniae INV200)

2e-100

164) SPJ_0126
( YP_002735240.1 )

CapD protein, required for the biosynthesis of type 1 capsular polysaccharide

NC_012466
(Streptococcus pneumoniae JJA)

2e-100

165) SPNOXC_01300
( YP_006063659.1 )

polysaccharide biosynthesis protein

NC_017592
(Streptococcus pneumoniae OXC141)

2e-100

166) SPN034183_01350
( YP_007813822.1 )

polysaccharide biosynthesis protein

NC_021028
(Streptococcus pneumoniae SNP034183)

2e-100

167) SPN994038_01350
( YP_007812004.1 )

polysaccharide biosynthesis protein

NC_021026
(Streptococcus pneumoniae SNP994038)

2e-100

168) SPN994039_01350
( YP_007762678.1 )

polysaccharide biosynthesis protein

NC_021005
(Streptococcus pneumoniae SNP994039)

2e-100

169) MYY_0174
( YP_006252372.1 )

capsular polysaccharide biosynthesis protein

NC_017769
(Streptococcus pneumoniae ST556)

2e-100

170) SPT_0137
( YP_002741647.1 )

CapD protein, required for the biosynthesis of type 1 capsular polysaccharide

NC_012469
(Streptococcus pneumoniae Taiwan19F-14)

2e-100

171) HMPREF0837_10392
( YP_003723834.1 )

capsular polysaccharide biosynthesis protein

NC_014251
(Streptococcus pneumoniae TCH8431/19A)

2e-100

172) SP_0103
( NP_344650.1 )

capsular polysaccharide biosynthesis protein

NC_003028
(Streptococcus pneumoniae TIGR4)

2e-100

173) SPAP_0145
( YP_003875741.1 )

putative nucleoside-diphosphate sugar epimerase

NC_014494
(Streptococcus pneumoniae AP200)

2e-100

174) SPG_0100
( YP_002036815.1 )

capsular polysaccharide biosynthesis protein

NC_011072
(Streptococcus pneumoniae G54)

2e-100

175) HMPREF1038_00163
( YP_006742368.1 )

epimerase/dehydratase WbiI

NC_018630
(Streptococcus pneumoniae gamPNI0373)

2e-100

176) INV104_00820
( YP_006061790.1 )

polysaccharide biosynthesis protein

NC_017591
(Streptococcus pneumoniae INV104)

2e-100

177) SPP_0162
( YP_002737394.1 )

CapD protein, required for the biosynthesis of type 1 capsular polysaccharide

NC_012467
(Streptococcus pneumoniae P1031)

2e-100

178) SPN034156_11970
( YP_007765474.1 )

polysaccharide biosynthesis protein

NC_021006
(Streptococcus pneumoniae SNP034156)

2e-100

179) TepRe1_1757
( YP_004461195.1 )

polysaccharide biosynthesis protein CapD

NC_015519
(Tepidanaerobacter acetatoxydans Re1)

3e-100

180) capD
( YP_008619086.1 )

Capsular polysaccharide biosynthesis protein CapD

NC_019954
(Tepidanaerobacter acetatoxydans Re1)

3e-100

181) smi_1982
( YP_003447078.1 )

nucleoside-diphosphate sugar isomerase

NC_013853
(Streptococcus mitis B6)

4e-100

182) Glov_1513
( YP_001951749.1 )

polysaccharide biosynthesis protein CapD

NC_010814
(Geobacter lovleyi SZ)

7e-100

183) Clo1313_2997
( YP_005689426.1 )

polysaccharide biosynthesis protein CapD

NC_017304
(Clostridium thermocellum DSM 1313)

8e-100

184) capD
( YP_003781565.1 )

capsular polysaccharide biosynthesis protein

NC_014328
(Clostridium ljungdahlii ATCC 49587)

9e-100

185) CLH_2929
( YP_001922306.1 )

Cap5D

NC_010723
(Clostridium botulinum Alaska E43)

1e-99

186) EFD32_1900
( YP_006538261.1 )

capsular polysaccharide biosynthesis protein

NC_018221
(Enterococcus faecalis D32)

2e-99

187) Cthe_2334
( YP_001038729.1 )

polysaccharide biosynthesis protein CapD

NC_009012
(Clostridium thermocellum ATCC 27405)

2e-99

188) Cthe_2650
( YP_001039042.1 )

polysaccharide biosynthesis protein CapD

NC_009012
(Clostridium thermocellum ATCC 27405)

2e-99

189) Clo1313_0239
( YP_005686784.1 )

polysaccharide biosynthesis protein CapD

NC_017304
(Clostridium thermocellum DSM 1313)

3e-99

190) Exig_2574
( YP_001815040.1 )

polysaccharide biosynthesis protein CapD

NC_010556
(Exiguobacterium sibiricum 255-15)

4e-99

191) capD
( YP_005269752.1 )

capsular polysaccharide biosynthesis protein CapD

NC_016894
(Acetobacterium woodii DSM 1030)

4e-99

192) SP70585_0166
( YP_002739477.1 )

CapD protein, required for the biosynthesis of type 1 capsular polysaccharide

NC_012468
(Streptococcus pneumoniae 70585)

2e-98

193) Desor_5144
( YP_004973048.1 )

nucleoside-diphosphate sugar epimerase

NC_016584
(Desulfosporosinus orientis DSM 765)

2e-98

194) HMPREF9243_0860
( YP_004321158.1 )

polysaccharide biosynthesis protein

NC_015278
(Aerococcus urinae ACS-120-V-Col10a)

3e-98

195) CLL_A3186
( YP_001887372.1 )

capsular polysaccharide biosynthesis protein

NC_010674
(Clostridium botulinum Eklund 17B)

1e-97

196) Tlie_1827
( YP_004933635.1 )

polysaccharide biosynthesis protein CapD

NC_016148
(Thermovirga lienii DSM 17291)

1e-97

197) Eab7_2414
( YP_006792116.1 )

polysaccharide biosynthesis protein CapD

NC_018665
(Exiguobacterium antarcticum Eab7)

2e-97

198) epsC
( YP_006919014.1 )

polysaccharide biosynthesis protein EpsC

NC_018870
(Thermacetogenium phaeum DSM 12270)

2e-97

199) EAT1b_1378
( YP_002885750.1 )

polysaccharide biosynthesis protein CapD

NC_012673
(Exiguobacterium sp. AT1b)

9e-98

200) Swol_0128
( YP_752854.1 )

hypothetical protein

NC_008346
(Syntrophomonas wolfei Goettingen)

3e-97

201) Thexy_1791
( YP_004471487.1 )

polysaccharide biosynthesis protein CapD

NC_015555
(Thermoanaerobacterium xylanolyticum LX-11)

4e-97

202) Hprae_0363
( YP_005835679.1 )

polysaccharide biosynthesis protein CapD

NC_017455
(Halanaerobium praevalens DSM 2228)

1e-96

203) Clocl_4185
( YP_005048538.1 )

putative nucleoside-diphosphate sugar epimerase

NC_016627
(Clostridium clariflavum DSM 19732)

2e-96

204) Dsui_0400
( YP_005026655.1 )

putative nucleoside-diphosphate sugar epimerase

NC_016616
(Dechlorosoma suillum PS)

1e-95

205) capD
( YP_007825518.1 )

putative capsular polysaccharide biosynthesis protein

NC_021036
(Taylorella equigenitalis 14/56)

6e-96

206) capD
( YP_006502118.1 )

putative capsular polysaccharide biosynthesis protein

NC_018108
(Taylorella equigenitalis ATCC 35865)

6e-96

207) TEQUI_1023
( YP_004130091.1 )

UDP-N-acetylglucosamine 4,6-dehydratase

NC_014914
(Taylorella equigenitalis MCE9)

2e-95

208) Trad_0100
( YP_003703785.1 )

polysaccharide biosynthesis protein CapD

NC_014221
(Truepera radiovictrix DSM 17093)

2e-95

209) Cal6303_1093
( YP_007136128.1 )

polysaccharide biosynthesis protein CapD

NC_019751
(Calothrix sp. PCC 6303)

8e-95

210) Deipe_0919
( YP_007180253.1 )

nucleoside-diphosphate sugar epimerase

NC_019793
(Deinococcus peraridilitoris DSM 19664)

1e-94

211) Vpar_0669
( YP_003311632.1 )

polysaccharide biosynthesis protein CapD

NC_013520
(Veillonella parvula DSM 2008)

1e-94

212) Riv7116_0259
( YP_007053411.1 )

putative nucleoside-diphosphate sugar epimerase

NC_019678
(Rivularia sp. PCC 7116)

1e-94

213) Dred_3050
( YP_001114377.1 )

polysaccharide biosynthesis protein CapD

NC_009253
(Desulfotomaculum reducens MI-1)

2e-94

214) TTE0668
( NP_622330.1 )

nucleoside-diphosphate sugar epimerase

NC_003869
(Thermoanaerobacter tengcongensis MB4)

2e-94

215) Slip_0161
( YP_003701526.1 )

polysaccharide biosynthesis protein CapD

NC_014220
(Syntrophothermus lipocalidus DSM 12680)

4e-94

216) CD630_27690
( YP_001089282.1 )

polysaccharide biosynthesis protein

NC_009089
(Clostridium difficile 630)

5e-94

217) Acear_2111
( YP_003828666.1 )

polysaccharide biosynthesis protein CapD

NC_014378
(Acetohalobium arabaticum DSM 5501)

6e-94

218) CLS_02560
( YP_007848112.1 )

Predicted nucleoside-diphosphate sugar epimerases

NC_021047
(Clostridium saccharolyticum K10)

1e-93

219) yveM
( YP_002773739.1 )

polysaccharide biosynthesis protein

NC_012491
(Brevibacillus brevis NBRC 100599)

2e-93

220) Cphy_3494
( YP_001560584.1 )

polysaccharide biosynthesis protein CapD

NC_010001
(Clostridium phytofermentans ISDg)

3e-93

221) NH44784_023811
( YP_008029468.1 )

UDP-N-acetylglucosamine 4,6-dehydratase

NC_021285
(Achromobacter xylosoxidans NH44784-1996)

3e-93

222) ebA1630
( YP_157915.1 )

polysaccharide biosynthesis protein

NC_006513
(Aromatoleum aromaticum EbN1)

4e-93

223) capDb
( YP_007553016.1 )

capsular polysaccharide biosynthesis protein

NC_020516
(Azoarcus sp. KH32C)

4e-93

224) Cagg_1997
( YP_002463321.1 )

polysaccharide biosynthesis protein CapD

NC_011831
(Chloroflexus aggregans DSM 9485)

4e-93

225) Sgly_3011
( YP_004267281.1 )

polysaccharide biosynthesis protein CapD

NC_015172
(Syntrophobotulus glycolicus DSM 8271)

1e-92

226) ANT_22620
( YP_004174888.1 )

putative polysaccharide biosynthesis protein

NC_014960
(Anaerolinea thermophila UNI-1)

9e-93

227) EUBREC_2619
( YP_002938484.1 )

UDP-N-acetylglucosamine 4,6-dehydratase / UDP-D-quinovosamine 4-dehydrogenase

NC_012781
(Eubacterium rectale ATCC 33656)

2e-92

228) EUR_25350
( YP_007773621.1 )

Predicted nucleoside-diphosphate sugar epimerases

NC_021010
(Eubacterium rectale DSM 17629)

2e-92

229) ERE_08710
( YP_007841734.1 )

Predicted nucleoside-diphosphate sugar epimerases

NC_021044
(Eubacterium rectale M104/1)

2e-92

230) Metme_1198
( YP_004512126.1 )

polysaccharide biosynthesis protein CapD

NC_015572
(Methylomonas methanica MC09)

2e-92

231) Ctha_2155
( YP_001997053.1 )

polysaccharide biosynthesis protein CapD

NC_011026
(Chloroherpeton thalassium ATCC 35110)

2e-92

232) CLM_3515
( YP_002805630.1 )

exopolysaccharide biosynthesis protein

NC_012563
(Clostridium botulinum Kyoto)

2e-92

233) CBF_3157
( YP_005675956.1 )

exopolysaccharide biosynthesis protein

NC_017297
(Clostridium botulinum 230613)

3e-92

234) CLI_3168
( YP_001392387.1 )

exopolysaccharide biosynthesis protein

NC_009699
(Clostridium botulinum Langeland)

3e-92

235) Mfla_1278
( YP_545387.1 )

polysaccharide biosynthesis protein CapD

NC_007947
(Methylobacillus flagellatus KT)

3e-92

236) capD
( YP_007821462.1 )

putative capsular polysaccharide biosynthesis protein

NC_021033
(Taylorella asinigenitalis 14/45)

4e-92

237) capD2
( YP_003798314.1 )

polysaccharide biosynthesis protein CapD

NC_014355
(Candidatus Nitrospira defluvii )

5e-92

238) Amico_1715
( YP_003554554.1 )

polysaccharide biosynthesis protein CapD

NC_014011
(Aminobacterium colombiense DSM 12261)

2e-91

239) Msip34_1724
( YP_003051496.1 )

polysaccharide biosynthesis protein CapD

NC_012969
(Methylovorus glucosetrophus SIP3-4)

4e-91

240) MPQ_1724
( YP_004040113.1 )

polysaccharide biosynthesis protein capd

NC_014733
(Methylovorus sp. MP688)

5e-91

241) AXYL_06301
( YP_003982309.1 )

polysaccharide biosynthesis protein

NC_014640
(Achromobacter xylosoxidans A8)

7e-91

242) H04402_03186
( YP_005679717.1 )

UDP-N-acetylglucosamine 4,6-dehydratase

NC_017299
(Clostridium botulinum H04402 065)

1e-90

243) CLK_2503
( YP_001788430.1 )

exopolysaccharide biosynthesis protein

NC_010520
(Clostridium botulinum Loch Maree)

2e-90

244) TASI_0395
( YP_004874194.1 )

UDP-N-acetylglucosamine 4,6-dehydratase

NC_016043
(Taylorella asinigenitalis MCE3)

2e-90

245) CLB_3138
( YP_001385431.1 )

exopolysaccharide biosynthesis protein

NC_009697
(Clostridium botulinum ATCC 19397)

2e-90

246) CBO3109
( YP_001255601.1 )

exopolysaccharide biosynthesis protein

NC_009495
(Clostridium botulinum ATCC 3502)

2e-90

247) CLC_3011
( YP_001388838.1 )

exopolysaccharide biosynthesis protein

NC_009698
(Clostridium botulinum Hall)

2e-90

248) capD
( YP_003777599.1 )

polysaccharide biosynthesis protein

NC_014323
(Herbaspirillum seropedicae SmR1)

2e-90

249) FMG_1137
( YP_001692445.1 )

capsular polysaccharide biosynthesis protein

NC_010376
(Finegoldia magna ATCC 29328)

2e-90

250) capD2
( YP_002604223.1 )

protein CapD2

NC_012108
(Desulfobacterium autotrophicum HRM2)

2e-90

251) Tbd_1871
( YP_315629.1 )

epimerase/dehydratase-like biosynthesis protein

NC_007404
(Thiobacillus denitrificans ATCC 25259)

3e-90

252) Halsa_0607
( YP_003994417.1 )

polysaccharide biosynthesis protein CapD

NC_014654
(Halanaerobium hydrogeniformans sapolanicus)

4e-90

253) ELI_3080
( YP_003961012.1 )

hypothetical protein

NC_014624
(Eubacterium limosum KIST612)

5e-90

254) CLD_1431
( YP_001782744.1 )

exopolysaccharide biosynthesis protein

NC_010516
(Clostridium botulinum Okra)

6e-90

255) ROI_04900
( YP_007830821.1 )

Predicted nucleoside-diphosphate sugar epimerases

NC_021040
(Roseburia intestinalis M50/1)

1e-89

256) CLJ_B3375
( YP_002864117.1 )

exopolysaccharide biosynthesis protein

NC_012658
(Clostridium botulinum 657)

2e-89

257) capD
( YP_001396556.1 )

protein CapD

NC_009706
(Clostridium kluyveri DSM 555)

2e-89

258) CKR_2815
( YP_002473280.1 )

hypothetical protein

NC_011837
(Clostridium kluyveri NBRC 12016)

2e-89

259) RO1_35260
( YP_007779575.1 )

Predicted nucleoside-diphosphate sugar epimerases

NC_021012
(Roseburia intestinalis XB6B4)

3e-89

260) CD196_2610
( YP_003215628.1 )

capsular polysaccharide biosynthesis protein

NC_013315
(Clostridium difficile CD196)

3e-89

261) CDR20291_2657
( YP_003219136.1 )

capsular polysaccharide biosynthesis protein

NC_013316
(Clostridium difficile R20291)

3e-89

262) Desal_3620
( YP_002993205.1 )

polysaccharide biosynthesis protein CapD

NC_012881
(Desulfovibrio salexigens DSM 2638)

1e-88

263) M301_1256
( YP_003674216.1 )

polysaccharide biosynthesis protein CapD

NC_014207
(Methylotenera versatilis 301)

2e-88

264) wbgZ
( YP_001141296.1 )

polysaccharide biosynthesis protein WbgZ

NC_009348
(Aeromonas salmonicida A449)

3e-88

265) wbiI
( YP_004030003.1 )

nucleotide sugar epimerase/dehydratase

NC_014722
(Burkholderia rhizoxinica HKI 454)

4e-88

266) Pcar_1536
( YP_006717261.1 )

NAD-dependent nucleoside diphosphate-sugar epimerase/dehydratase

NC_007498
(Pelobacter carbinolicus DSM 2380)

6e-88

267) K734_02850
( YP_008034071.1 )

epimerase

NC_021286
(Idiomarina loihiensis GSL 199)

7e-88

268) IL0569
( YP_154959.1 )

epimerase

NC_006512
(Idiomarina loihiensis L2TR)

7e-88

269) capD
( YP_004845682.1 )

polysaccharide biosynthesis protein CapD

NC_016002
(Pseudogulbenkiania sp. NH8B)

1e-87

270) Rcas_1360
( YP_001431474.1 )

polysaccharide biosynthesis protein CapD

NC_009767
(Roseiflexus castenholzii DSM 13941)

1e-87

271) SCD_n02873
( YP_008547704.1 )

polysaccharide biosynthesis protein CapD

NC_022357
(Sulfuricella denitrificans skB26)

1e-87

272) EGYY_08980
( YP_004710488.1 )

putative nucleoside-diphosphate sugar epimerase

NC_015738
(Eggerthella sp. YY7918)

2e-87

273) yveM
( YP_003935436.1 )

putative capsular polysaccharide biosynthesis protein YveM

NC_014614
(Clostridium sticklandii DSM 519)

2e-87

274) Nit79A3_0675
( YP_004693953.1 )

polysaccharide biosynthesis protein CapD

NC_015731
(Nitrosomonas sp. Is79A3)

3e-87

275) LRC_00890
( YP_004831358.1 )

exopolysaccharide biosynthesis protein

NC_015975
(Lactobacillus ruminis ATCC 27782)

3e-87

276) CPE0463
( NP_561379.1 )

capsular polysaccharide biosynthesis protein

NC_003366
(Clostridium perfringens 13)

5e-87

277) capD
( YP_002786788.1 )

capsular polysaccharide biosynthesis protein capD

NC_012526
(Deinococcus deserti VCD115)

1e-86

278) capD
( YP_007325345.1 )

Capsular polysaccharide biosynthesis protein CapD

NC_020055
(Desulfovibrio hydrothermalis DSM 14728)

1e-86

279) HN6_00820
( YP_005863883.1 )

UDP-N-acetylglucosamine 4,6-dehydratase / UDP-D-quinovosamine 4-dehydrogenase

NC_017481
(Lactobacillus salivarius CECT 5713)

8e-87

280) LSL_0995
( YP_535886.1 )

UDP-N-acetylglucosamine 4,6-dehydratase / UDP-D-quinovosamine 4-dehydrogenase

NC_007929
(Lactobacillus salivarius UCC118)

9e-87

281) Deima_2963
( YP_004172257.1 )

polysaccharide biosynthesis protein CapD

NC_014958
(Deinococcus maricopensis DSM 21211)

1e-86

282) TVNIR_1899
( YP_007217041.1 )

UDP-N-acetylglucosamine 4,6-dehydratase

NC_019902
(Thioalkalivibrio nitratireducens DSM 14787)

1e-86

283) Npun_F2440
( YP_001865944.1 )

polysaccharide biosynthesis protein CapD

NC_010628
(Nostoc punctiforme PCC 73102)

2e-86

284) Alvin_3100
( YP_003445031.1 )

polysaccharide biosynthesis protein CapD

NC_013851
(Allochromatium vinosum DSM 180)

2e-86

285) Sulac_3375
( YP_005258490.1 )

polysaccharide biosynthesis protein CapD

NC_016884
(Sulfobacillus acidophilus DSM 10332)

3e-86

286) TPY_3676
( YP_004721571.1 )

polysaccharide biosynthesis protein CapD

NC_015757
(Sulfobacillus acidophilus TPY)

3e-86

287) wbfY
( NP_718727.1 )

polysaccharide biosynthesis protein epimerase/dehydratase-like WbfY

NC_004347
(Shewanella oneidensis MR-1)

7e-86

288) ebA5907
( YP_160386.1 )

nucleoside-diphosphate sugar epimerase

NC_006513
(Aromatoleum aromaticum EbN1)

9e-86

289) EUBELI_00082
( YP_002929566.1 )

hypothetical protein

NC_012778
(Eubacterium eligens ATCC 27750)

1e-85

290) wbpM
( YP_002439522.1 )

nucleotide sugar epimerase/dehydratase WbpM

NC_011770
(Pseudomonas aeruginosa LESB58)

1e-85

291) wbpM
( NP_251831.1 )

nucleotide sugar epimerase/dehydratase WbpM

NC_002516
(Pseudomonas aeruginosa PAO1)

2e-85

292) B565_2775
( YP_004393427.1 )

epimerase/dehydratase family WbfY-like protein

NC_015424
(Aeromonas veronii B565)

2e-85

293) CAP2UW1_0118
( YP_003165407.1 )

polysaccharide biosynthesis protein CapD

NC_013194
(Candidatus Accumulibacter phosphatis UW-1)

2e-85

294) G655_09090
( YP_007708665.1 )

nucleotide sugar epimerase/dehydratase

NC_020912
(Pseudomonas aeruginosa B136-33)

2e-85

295) wbpM
( YP_005982480.1 )

nucleotide sugar epimerase/dehydratase

NC_017549
(Pseudomonas aeruginosa NCGM2.S1)

2e-85

296) PADK2_08625
( YP_006481720.1 )

nucleotide sugar epimerase/dehydratase WbpM

NC_018080
(Pseudomonas aeruginosa DK2)

2e-85

297) wbpM
( YP_005974410.1 )

nucleotide sugar epimerase/dehydratase WbpM

NC_017548
(Pseudomonas aeruginosa M18)

2e-85

298) M062_16805
( YP_008133774.1 )

membrane protein

NC_021577
(Pseudomonas aeruginosa RP73)

2e-85

299) wbpM
( YP_790032.1 )

nucleotide sugar epimerase/dehydratase WbpM

NC_008463
(Pseudomonas aeruginosa UCBPP-PA14)

2e-85

300) CV_4115
( NP_903785.1 )

polysaccharide biosynthesis protein

NC_005085
(Chromobacterium violaceum ATCC 12472)

5e-85

301) wbpM
( YP_004751470.1 )

nucleoside-diphosphate sugar epimerase/dehydratase

NC_015856
(Collimonas fungivorans Ter331)

6e-85

302) Phep_3919
( YP_003094172.1 )

polysaccharide biosynthesis protein CapD

NC_013061
(Pedobacter heparinus DSM 2366)

6e-85

303) GBP346_A3270
( YP_002897945.1 )

putative epimerase/dehydratase WbiI

NC_012695
(Burkholderia pseudomallei MSHR346)

6e-85

304) Apre_1272
( YP_003153016.1 )

polysaccharide biosynthesis protein CapD

NC_013171
(Anaerococcus prevotii DSM 20548)

7e-85

305) Thivi_2782
( YP_006414825.1 )

putative nucleoside-diphosphate sugar epimerase

NC_018012
(Thiocystis violascens DSM 198)

8e-85

306) Desti_4692
( YP_006449577.1 )

putative nucleoside-diphosphate sugar epimerase

NC_018025
(Desulfomonile tiedjei DSM 6799)

1e-84

307) MCA0903
( YP_113388.1 )

polysaccharide biosynthesis protein

NC_002977
(Methylococcus capsulatus Bath)

1e-84

308) Belba_2094
( YP_006407417.1 )

putative nucleoside-diphosphate sugar epimerase

NC_018010
(Belliella baltica DSM 15883)

2e-84

309) Pedsa_3253
( YP_004275610.1 )

polysaccharide biosynthesis protein CapD

NC_015177
(Pedobacter saltans DSM 12145)

2e-84

310) SVI_1496
( YP_003556245.1 )

polysaccharide biosynthesis protein

NC_014012
(Shewanella violacea DSS12)

2e-84

311) CYCME_0466
( YP_008373166.1 )

putative nucleoside-diphosphate sugar epimerase

NC_021917
(Cycloclasticus zancles 7-ME)

8e-85

312) Dole_1009
( YP_001528896.1 )

polysaccharide biosynthesis protein CapD

NC_009943
(Desulfococcus oleovorans Hxd3)

9e-85

313) Calni_0125
( YP_004050202.1 )

polysaccharide biosynthesis protein capd

NC_014758
(Calditerrivibrio nitroreducens DSM 19672)

2e-84

314) capD
( YP_004738200.1 )

polysaccharide biosynthesis protein CapD

NC_015844
(Zobellia galactanivorans DsiJT)

2e-84

315) Celly_2642
( YP_004263330.1 )

polysaccharide biosynthesis protein CapD

NC_015167
(Cellulophaga lytica DSM 7489)

2e-84

316) LLO_0936
( YP_003454421.1 )

nucleoside-diphosphate sugar epimerases

NC_013861
(Legionella longbeachae NSW150)

3e-84

317) PSPA7_1986
( YP_001347367.1 )

nucleotide sugar epimerase/dehydratase WbpM

NC_009656
(Pseudomonas aeruginosa PA7)

5e-84

318) Ccur_05820
( YP_003150981.1 )

nucleoside-diphosphate sugar epimerase

NC_013170
(Cryptobacterium curtum DSM 15641)

1e-83

319) Sama_2244
( YP_928119.1 )

polysaccharide biosynthesis protein

NC_008700
(Shewanella amazonensis SB2B)

7e-84

320) Q91_1970
( YP_006838507.1 )

nucleotide sugar epimerase/dehydratase WbpM

NC_018697
(Cycloclasticus sp. P1; MCCC 1A01040)

7e-84

321) Nwat_2113
( YP_003761267.1 )

polysaccharide biosynthesis protein CapD

NC_014315
(Nitrosococcus watsonii C-113)

7e-84

322) NAL212_0301
( YP_004293418.1 )

polysaccharide biosynthesis protein CapD

NC_015222
(Nitrosomonas sp. AL212)

2e-83

323) Elen_2347
( YP_003182694.1 )

polysaccharide biosynthesis protein CapD

NC_013204
(Eggerthella lenta DSM 2243)

4e-83

324) Swoo_1680
( YP_001760060.1 )

polysaccharide biosynthesis protein CapD

NC_010506
(Shewanella woodyi ATCC 51908)

4e-83

325) Sden_2645
( YP_563647.1 )

polysaccharide biosynthesis protein CapD

NC_007954
(Shewanella denitrificans OS217)

5e-83

326) wbpM
( YP_008102324.1 )

polysaccharide biosynthesis protein WbpM

NC_021499
(Pseudomonas resinovorans NBRC 106553)

8e-83

327) Patl_4002
( YP_663556.1 )

polysaccharide biosynthesis protein CapD

NC_008228
(Pseudoalteromonas atlantica T6c)

1e-82

328) PSEBR_a1571
( YP_004352776.1 )

nucleotide sugar epimerase/dehydratase WbpM

NC_015379
(Pseudomonas brassicacearum NFM421)

1e-82

329) Rleg_6005
( YP_002978517.1 )

polysaccharide biosynthesis protein CapD

NC_012852
(Rhizobium leguminosarum WSM1325)

1e-82

330) Calkr_2286
( YP_004027353.1 )

polysaccharide biosynthesis protein capd

NC_014721
(Caldicellulosiruptor kristjanssonii 177R1B)

2e-82

331) Calla_0167
( YP_004797829.1 )

polysaccharide biosynthesis protein CapD

NC_015949
(Caldicellulosiruptor lactoaceticus 6A)

2e-82

332) YSA_02152
( YP_006385049.1 )

polysaccharide biosynthesis protein CapD

NC_017986
(Pseudomonas putida ND6)

2e-82

333) PPS_1447
( YP_004700902.1 )

polysaccharide biosynthesis protein CapD

NC_015733
(Pseudomonas putida S16)

3e-82

334) DICTH_0426
( YP_002250308.1 )

CapD protein

NC_011297
(Dictyoglomus thermophilum H-6-12)

5e-82

335) pRL90052
( YP_765345.1 )

putative polysaccharide biosynthesis O-antigen related protein

NC_008379
(Rhizobium leguminosarum 3841)

5e-82

336) Marpi_1345
( YP_005097046.1 )

nucleoside-diphosphate sugar epimerase

NC_016751
(Marinitoga piezophila KA3)

6e-82

337) Runsl_4096
( YP_004657575.1 )

polysaccharide biosynthesis protein CapD

NC_015703
(Runella slithyformis DSM 19594)

1e-81

338) lpa_01458
( YP_003618251.1 )

nucleoside-diphosphate sugar epimerase

NC_014125
(Legionella pneumophila 2300/99 Alcoy)

1e-81

339) lp12_0988
( YP_005185356.1 )

nucleoside-diphosphate sugar epimerase

NC_016811
(Legionella pneumophila ATCC 43290)

1e-81

340) capD
( YP_001251589.1 )

nucleoside-diphosphate sugar epimerase

NC_009494
(Legionella pneumophila Corby)

1e-81

341) LPO_1050
( YP_006505063.1 )

capsular polysaccharide biosynthesis protein

NC_018139
(Legionella pneumophila Lorraine)

1e-81

342) lpg0966
( YP_095000.1 )

nucleoside-diphosphate sugar epimerases

NC_002942
(Legionella pneumophila Philadelphia 1)

1e-81

343) capD
( YP_008062670.1 )

nucleoside-diphosphate sugar epimerase

NC_021350
(Legionella pneumophila Thunder Bay)

1e-81

344) Psest_1825
( YP_007240001.1 )

nucleoside-diphosphate sugar epimerase

NC_019936
(Pseudomonas stutzeri RCH2)

1e-81

345) wbpM
( NP_743960.1 )

polysaccharide biosynthesis protein CapD

NC_002947
(Pseudomonas putida KT2440)

1e-81

346) LPV_1104
( YP_006508183.1 )

capsular polysaccharide biosynthesis protein

NC_018140
(Legionella pneumophila HL06041035)

2e-81

347) REMIM1_CH00792
( YP_008363571.1 )

polysaccharide biosynthesis CapD-like protein

NC_021905
(Rhizobium etli Mim1)

2e-81

348) XNC1_0138
( YP_003710483.1 )

dTDP-glucose-4,6-dehydratase/UDP-glucose 4-epimerase

NC_014228
(Xenorhabdus nematophila ATCC 19061)

9e-82

349) lpl0995
( YP_126354.1 )

hypothetical protein

NC_006369
(Legionella pneumophila Lens)

9e-82

350) cap1D
( YP_006533695.1 )

polysaccharide biosynthesis protein CapD

NC_018220
(Pseudomonas putida DOT-T1E)

9e-82

351) lpp1028
( YP_123356.1 )

hypothetical protein

NC_006368
(Legionella pneumophila Paris)

2e-81

352) LPE509_02241
( YP_007568784.1 )

Polysaccharide biosynthesis protein

NC_020521
(Legionella pneumophila Philadelphia 1)

2e-81

353) Taci_0039
( YP_003316561.1 )

polysaccharide biosynthesis protein CapD

NC_013522
(Thermanaerovibrio acidaminovorans DSM 6589)

3e-81

354) RBR_04740
( YP_007780647.1 )

Predicted nucleoside-diphosphate sugar epimerases

NC_021013
(Ruminococcus bromii L2-63)

3e-81

355) wbfY
( YP_004821975.1 )

wbfy protein

NC_015964
(Haemophilus parainfluenzae T3T1)

4e-81

356) PSJM300_08115
( YP_006524049.1 )

nucleotide sugar epimerase/dehydratase WbpM

NC_018177
(Pseudomonas stutzeri DSM 10701)

4e-81

357) ACIAD0096
( YP_044897.1 )

dTDP-glucose-4,6-dehydratase/UDP-glucose 4-epimerase

NC_005966
(Acinetobacter sp. ADP1)

4e-81

358) Sputcn32_2527
( YP_001184047.1 )

polysaccharide biosynthesis protein CapD

NC_009438
(Shewanella putrefaciens CN-32)

6e-81

359) CPS_0594
( YP_267344.1 )

polysaccharide biosynthesis protein

NC_003910
(Colwellia psychrerythraea 34H)

1e-80

360) BN4_12169
( YP_007494555.1 )

Polysaccharide biosynthesis protein CapD

NC_020409
(Desulfovibrio piezophilus C1TLV30)

1e-80

361) XALc_1597
( YP_003376086.1 )

sugar epimerase

NC_013722
(Xanthomonas albilineans GPE PC73)

1e-80

362) FSU_0179
( YP_005820338.1 )

capsular polysaccharide biosynthesis protein

NC_017448
(Fibrobacter succinogenes S85)

6e-81

363) lpsB2
( YP_001984979.1 )

dTDP-glucose 4,6-dehydratase

NC_010997
(Rhizobium etli CIAT 652)

7e-81

364) SYN_02670
( YP_462657.1 )

UDP-N-acetylglucosamine 4,6-dehydratase / UDP-D-quinovosamine 4-dehydrogenase

NC_007759
(Syntrophus aciditrophicus SB)

7e-81

365) Kole_1759
( YP_002941448.1 )

polysaccharide biosynthesis protein CapD

NC_012785
(Kosmotoga olearia TBF 19.5.1)

8e-81

366) SYN_02689
( YP_462638.1 )

UDP-N-acetylglucosamine 4,6-dehydratase / UDP-4-dehydro-6-deoxy-2-acetamido-D-glucose 4-reductase

NC_007759
(Syntrophus aciditrophicus SB)

8e-81

367) lpsB2
( YP_471773.1 )

dTDP-glucose 4,6-dehydratase

NC_007763
(Rhizobium etli CFN 42)

9e-81

368) REMIM1_PA00003
( YP_008366884.1 )

polysaccharide biosynthesis CapD-like protein

NC_021906
(Rhizobium etli Mim1)

9e-81

369) Ethha_0666
( YP_004090966.1 )

polysaccharide biosynthesis protein CapD

NC_014828
(Ethanoligenens harbinense YUAN-3)

2e-80

370) mma_2254
( YP_001353944.1 )

nucleoside-diphosphate sugar epimerases

NC_009659
(Janthinobacterium sp. Marseille)

2e-80

371) MARHY2533
( YP_005430420.1 )

dTDP-glucose-4, 6-dehydratase

NC_017067
(Marinobacter hydrocarbonoclasticus ATCC 49840)

2e-80

372) PputGB1_1379
( YP_001667622.1 )

polysaccharide biosynthesis protein CapD

NC_010322
(Pseudomonas putida GB-1)

2e-80

373) wbpM
( YP_008115018.1 )

polysaccharide biosynthesis protein WbpM

NC_021505
(Pseudomonas putida NBRC 14164)

2e-80

374) PputW619_1414
( YP_001748288.1 )

polysaccharide biosynthesis protein CapD

NC_010501
(Pseudomonas putida W619)

2e-80

375) L483_06580
( YP_008093140.1 )

membrane protein

NC_021491
(Pseudomonas putida H8234)

2e-80

376) SPISAL_08115
( YP_008047182.1 )

polysaccharide biosynthesis protein CapD

NC_021291
(Spiribacter salinus M19-40)

3e-80

377) NMBM01240149_0364
( YP_005895197.1 )

pilin glycosylation protein PglD

NC_017514
(Neisseria meningitidis M01-240149)

4e-80

378) Rleg2_6495
( YP_002284248.1 )

polysaccharide biosynthesis protein CapD

NC_011371
(Rhizobium leguminosarum WSM2304)

1e-79

379) Dtur_0573
( YP_002352476.1 )

polysaccharide biosynthesis protein CapD

NC_011661
(Dictyoglomus turgidum DSM 6724)

5e-80

380) CXIVA_25490
( YP_004709620.1 )

putative nucleoside-diphosphate sugar epimerase

NC_015737
(Clostridium sp. SY8519)

6e-80

381) CK1_17560
( YP_007783490.1 )

Predicted nucleoside-diphosphate sugar epimerases

NC_021014
(Ruminococcus sp. SR1/5)

6e-80

382) swp_1595
( YP_002310963.1 )

Polysaccharide biosynthesis protein CapD

NC_011566
(Shewanella piezotolerans WP3)

6e-80

383) PsycPRwf_0250
( YP_001279155.1 )

polysaccharide biosynthesis protein CapD

NC_009524
(Psychrobacter sp. PRwf-1)

7e-80

384) Nmul_A0631
( YP_411330.1 )

polysaccharide biosynthesis protein CapD

NC_007614
(Nitrosospira multiformis ATCC 25196)

7e-80

385) capD2
( YP_007028391.1 )

polysaccharide biosynthesis protein CapD

NC_019670
(Pseudomonas sp. UW4)

8e-80

386) XAC2293
( NP_642610.1 )

dehydratase

NC_003919
(Xanthomonas axonopodis 306)

8e-80

387) XAC29_11630
( YP_007636744.1 )

dehydratase

NC_020800
(Xanthomonas axonopodis Xac29-1)

8e-80

388) XCAW_01958
( YP_007649947.1 )

Nucleoside-diphosphate sugar epimerase

NC_020815
(Xanthomonas citri Aw12879)

8e-80

389) Psesu_1389
( YP_004146467.1 )

polysaccharide biosynthesis protein CapD

NC_014924
(Pseudoxanthomonas suwonensis 11-1)

1e-79

390) B479_06985
( YP_007228256.1 )

polysaccharide biosynthesis protein CapD

NC_019905
(Pseudomonas putida PC9)

2e-79

391) XCR_2457
( YP_005637450.1 )

epimerase

NC_017271
(Xanthomonas campestris 756C)

2e-79

392) xccb100_1991
( YP_001903396.1 )

hypothetical protein

NC_010688
(Xanthomonas campestris B100)

2e-79

393) PSEBR_a1575
( YP_004352780.1 )

nucleotide sugar epimerase/dehydratase WbpM

NC_015379
(Pseudomonas brassicacearum NFM421)

3e-79

394) XC_1929
( YP_243012.1 )

epimerase

NC_007086
(Xanthomonas campestris 8004)

3e-79

395) XCC2189
( NP_637545.1 )

epimerase

NC_003902
(Xanthomonas campestris ATCC 33913)

3e-79

396) XACM_2301
( YP_004851862.1 )

nucleoside-diphosphate sugar epimerase

NC_016010
(Xanthomonas axonopodis F1)

3e-79

397) XCV2491
( YP_364222.1 )

sugar epimerase

NC_007508
(Xanthomonas campestris 85-10)

3e-79

398) XOO2185
( YP_200824.1 )

epimerase

NC_006834
(Xanthomonas oryzae KACC10331)

3e-79

399) XOO_2055
( YP_451084.1 )

epimerase

NC_007705
(Xanthomonas oryzae MAFF 311018)

3e-79

400) PXO_00896
( YP_001913564.1 )

epimerase

NC_010717
(Xanthomonas oryzae PXO99A)

3e-79

401) PFLU1668
( YP_002871307.1 )

putative polysaccharide biosynthesis-related membrane protein

NC_012660
(Pseudomonas fluorescens SBW25)

4e-79

402) wbpM
( YP_005207078.1 )

protein WbpM

NC_016830
(Pseudomonas fluorescens F113)

4e-79

403) XOC_2688
( YP_005628965.1 )

epimerase

NC_017267
(Xanthomonas oryzae BLS256)

4e-79

404) TOL_2266
( YP_007682905.1 )

putative epimerase/dehydratase

NC_020888
(Thalassolituus oleivorans MIL-1)

5e-79

405) SELR_17400
( YP_005433471.1 )

putative capsular polysaccharide biosynthesis protein

NC_017068
(Selenomonas ruminantium TAM6421)

6e-79

406) wbpM
( YP_005356713.1 )

WbpM protein

NC_017025
(Flavobacterium indicum GPTSA100-9)

7e-79

407) Dde_0360
( YP_386856.1 )

polysaccharide biosynthesis protein CapD

NC_007519
(Desulfovibrio alaskensis G20)

8e-79

408) Pmob_1801
( YP_001568813.1 )

polysaccharide biosynthesis protein CapD

NC_010003
(Petrotoga mobilis SJ95)

2e-78

409) Sfum_3360
( YP_847468.1 )

polysaccharide biosynthesis protein CapD

NC_008554
(Syntrophobacter fumaroxidans MPOB)

2e-78

410) Tmz1t_1131
( YP_002354786.1 )

polysaccharide biosynthesis protein CapD

NC_011662
(Thauera sp. MZ1T)

3e-78

411) PSEEN1506
( YP_607184.1 )

dTDP-glucose-4,6-dehydratase/UDP-glucose 4-epimerase WbpM

NC_008027
(Pseudomonas entomophila L48)

4e-78

412) Psyr_3636
( YP_236706.1 )

polysaccharide biosynthesis protein CapD

NC_007005
(Pseudomonas syringae B728a)

4e-78

413) ABBFA_003450
( YP_002327322.1 )

epimerase/dehydratase WbiI

NC_011595
(Acinetobacter baumannii AB307-0294)

5e-78

414) ABAYE3804
( YP_001715522.1 )

dTDP-glucose-4,6-dehydratase/UDP-glucose 4-epimerase

NC_010410
(Acinetobacter baumannii AYE)

5e-78

415) wbpM
( YP_692648.1 )

polysaccharide biosynthesis protein

NC_008260
(Alcanivorax borkumensis SK2)

5e-78

416) PPUBIRD1_3828
( YP_005931620.1 )

Polysaccharide biosynthesis protein CapD

NC_017530
(Pseudomonas putida BIRD-1)

5e-78

417) HCH_02405
( YP_433641.1 )

nucleoside-diphosphate sugar epimerase

NC_007645
(Hahella chejuensis KCTC 2396)

6e-78

418) SULAZ_0357
( YP_002728351.1 )

polysaccharide biosynthesis protein CapD

NC_012438
(Sulfurihydrogenibium azorense Az-Fu1)

1e-77

419) Theba_2013
( YP_006346899.1 )

nucleoside-diphosphate sugar epimerase

NC_017934
(Mesotoga prima MesG1.Ag.4.2)

2e-77

420) GNIT_2482
( YP_004872572.1 )

polysaccharide biosynthesis protein

NC_016041
(Glaciecola nitratireducens FR1064)

3e-77

421) capD2
( YP_008001634.1 )

capsular polysaccharide biosynthesis protein CapD

NC_021237
(Pseudomonas fluorescens CHA0)

3e-77

422) wbpM
( NP_791581.1 )

nucleotide sugar epimerase/dehydratase WbpM

NC_004578
(Pseudomonas syringae DC3000)

3e-77

423) BJAB07104_00101
( YP_008207567.1 )

putative nucleoside-diphosphate sugar epimerase

NC_021726
(Acinetobacter baumannii BJAB07104)

4e-77

424) Hprae_0324
( YP_005835640.1 )

polysaccharide biosynthesis protein CapD

NC_017455
(Halanaerobium praevalens DSM 2228)

4e-77

425) HEAR1151
( YP_001099457.1 )

UDP-glucose 4-epimerase; nucleotide sugar epimerase

NC_009138
(Herminiimonas arsenicoxydans )

4e-77

426) capD
( YP_004714777.1 )

nucleotide sugar epimerase/dehydratase WbpM

NC_015740
(Pseudomonas stutzeri ATCC 17588)

4e-77

427) amb0099
( YP_419462.1 )

nucleoside-diphosphate sugar epimerase

NC_007626
(Magnetospirillum magneticum AMB-1)

4e-77

428) PSPPH_3656
( YP_275798.1 )

nucleotide sugar epimerase/dehydratase WbpM

NC_005773
(Pseudomonas syringae 1448A)

7e-77

429) Pfl01_4051
( YP_349779.1 )

polysaccharide biosynthesis protein CapD

NC_007492
(Pseudomonas fluorescens Pf0-1)

9e-77

430) ELI_13370
( YP_459563.1 )

polysaccharide biosynthesis protein CapD

NC_007722
(Erythrobacter litoralis HTCC2594)

2e-76

431) Daes_3164
( YP_004122902.1 )

polysaccharide biosynthesis protein capD

NC_014844
(Desulfovibrio aespoeensis Aspo-2)

2e-76

432) Rmag_0886
( YP_904072.1 )

polysaccharide biosynthesis protein CapD

NC_008610
(Candidatus Ruthia magnifica Cm)

3e-76

433) Cycma_3105
( YP_004775064.1 )

polysaccharide biosynthesis protein CapD

NC_015914
(Cyclobacterium marinum DSM 745)

3e-76

434) Dd703_3273
( YP_002988857.1 )

polysaccharide biosynthesis protein CapD

NC_012880
(Dickeya dadantii Ech703)

3e-76

435) wbpM
( YP_261397.1 )

nucleotide sugar epimerase/dehydratase WbpM

NC_004129
(Pseudomonas protegens Pf-5)

3e-76

436) Dd1591_3389
( YP_003005684.1 )

polysaccharide biosynthesis protein CapD

NC_012912
(Dickeya zeae Ech1591)

4e-76

437) Mlg_0802
( YP_741646.1 )

polysaccharide biosynthesis protein CapD

NC_008340
(Alkalilimnicola ehrlichii MLHE-1)

6e-76

438) Flexsi_0362
( YP_004602618.1 )

polysaccharide biosynthesis protein CapD

NC_015672
(Flexistipes sinusarabici DSM 4947)

7e-76

439) FNFX1_1468
( YP_005826376.1 )

hypothetical protein

NC_017450
(Francisella novicida Fx1)

1e-75

440) Nhal_2428
( YP_003527903.1 )

polysaccharide biosynthesis protein CapD

NC_013960
(Nitrosococcus halophilus Nc 4)

9e-76

441) F92_03230
( YP_007008754.1 )

NAD dependent epimerase/dehydratase family protein

NC_019537
(Francisella tularensis F92)

2e-75

442) wbtA
( YP_667533.1 )

dTDP-glucose 4,6-dehydratase

NC_008245
(Francisella tularensis FSC 198)

2e-75

443) wbtA
( YP_007011581.1 )

dTDP-glucose 4,6-dehydratase

NC_019551
(Francisella tularensis FSC200)

2e-75

444) FTA_0626
( YP_001428058.2 )

NAD dependent epimerase/dehydratase family protein

NC_009749
(Francisella tularensis FTNF002-00)

2e-75

445) FTL_0592
( YP_513352.1 )

dTDP-glucose 4,6-dehydratase

NC_007880
(Francisella tularensis LVS)

2e-75

446) NE061598_08175
( YP_005831586.1 )

dTDP-glucose 4,6-dehydratase

NC_017453
(Francisella tularensis NE061598)

2e-75

447) FTH_0592
( YP_763193.1 )

dTDP-glucose 4,6-dehydratase

NC_008369
(Francisella tularensis OSU18)

2e-75

448) wbtA
( YP_170401.1 )

dTDP-glucose 4,6-dehydratase

NC_006570
(Francisella tularensis SCHU S4)

2e-75

449) wbtA
( YP_001121460.1 )

NAD dependent epimerase/dehydratase family protein

NC_009257
(Francisella tularensis WY96-3418)

2e-75

450) TVNIR_1906
( YP_007217048.1 )

UDP-N-acetylglucosamine 4,6-dehydratase

NC_019902
(Thioalkalivibrio nitratireducens DSM 14787)

2e-75

451) Smal_1651
( YP_002028039.1 )

polysaccharide biosynthesis protein CapD

NC_011071
(Stenotrophomonas maltophilia R551-3)

3e-75

452) wbtA
( YP_001892099.1 )

dTDP-glucose 4,6-dehydratase

NC_010677
(Francisella tularensis FSC147)

4e-75

453) wbtA
( YP_005318525.1 )

UDP-N-acetylglucosamine 4 6-dehydratase

NC_016937
(Francisella tularensis TI0902)

4e-75

454) wbtA
( YP_005306071.1 )

UDP-N-acetylglucosamine 4 6-dehydratase

NC_016933
(Francisella tularensis TIGB03)

4e-75

455) THA_1627
( YP_002335406.1 )

epimerase/dehydratase WbiI

NC_011653
(Thermosipho africanus TCF52B)

6e-75

456) Mmwyl1_0813
( YP_001339682.1 )

polysaccharide biosynthesis protein CapD

NC_009654
(Marinomonas sp. MWYL1)

8e-75

457) ABLL_0825
( YP_005553017.1 )

epimerase

NC_017192
(Arcobacter sp. L)

2e-74

458) Dd586_0670
( YP_003332268.1 )

polysaccharide biosynthesis protein CapD

NC_013592
(Dickeya dadantii Ech586)

2e-74

459) Rmet_2723
( YP_584865.1 )

polysaccharide biosynthesis protein CapD-type

NC_007973
(Cupriavidus metallidurans CH34)

2e-74

460) Echvi_0060
( YP_007222372.1 )

nucleoside-diphosphate sugar epimerase

NC_019904
(Echinicola vietnamensis DSM 17526)

4e-74

461) Tlet_1006
( YP_001470636.1 )

polysaccharide biosynthesis protein CapD

NC_009828
(Thermotoga lettingae TMO)

6e-74

462) CPF_0910
( YP_695359.1 )

capsular polysaccharide biosynthesis protein

NC_008261
(Clostridium perfringens ATCC 13124)

1e-72

463) CTN_1131
( YP_002534673.1 )

Lipopolysaccharide biosynthesis protein

NC_011978
(Thermotoga neapolitana DSM 4359)

1e-72

464) Cphamn1_0371
( YP_001958819.1 )

polysaccharide biosynthesis protein CapD

NC_010831
(Chlorobium phaeobacteroides BS1)

1e-72

465) Weevi_1083
( YP_004238370.1 )

polysaccharide biosynthesis protein CapD

NC_015144
(Weeksella virosa DSM 16922)

2e-72

466) BHWA1_01906
( YP_002722073.1 )

polysaccharide biosynthesis protein

NC_012225
(Brachyspira hyodysenteriae WA1)

2e-72

467) Bint_2797
( YP_005595971.1 )

polysaccharide biosynthesis protein

NC_017243
(Brachyspira intermedia PWS/A)

5e-72

468) Hore_16980
( YP_002509442.1 )

nucleoside-diphosphate sugar epimerase

NC_011899
(Halothermothrix orenii H 168)

3e-71

469) PGLF
( NP_906308.1 )

sugar epimerase/dehydratase

NC_005090
(Wolinella succinogenes DSM 1740)

4e-71

470) Tmel_1286
( YP_001306520.1 )

polysaccharide biosynthesis protein CapD

NC_009616
(Thermosipho melanesiensis BI429)

6e-71

471) HMPREF0946_01294
( YP_008477592.1 )

hypothetical protein

NC_022196
(Fusobacterium sp. 3_1_36A2)

8e-71

472) B649_10065
( YP_007529020.1 )

hypothetical protein

NC_020505
(uncultured Sulfuricurvum sp. RIFRC-1)

8e-71

473) Veis_4862
( YP_999570.1 )

polysaccharide biosynthesis protein CapD

NC_008786
(Verminephrobacter eiseniae EF01-2)

1e-70

474) BP951000_1375
( YP_003785863.1 )

capsular polysaccharide biosynthesis protein

NC_014330
(Brachyspira pilosicoli 95/1000)

1e-69

475) B2904_orf2613
( YP_006708682.1 )

capsular polysaccharide biosynthesis protein

NC_018607
(Brachyspira pilosicoli B2904)

1e-69

476) BPP43_08200
( YP_007235092.1 )

capsular polysaccharide biosynthesis protein

NC_019908
(Brachyspira pilosicoli P43/6/78)

1e-69

477) WESB_0185
( YP_006702745.1 )

capsular polysaccharide biosynthesis protein

NC_018604
(Brachyspira pilosicoli WesB)

1e-69

478) Meso_0779
( YP_673344.1 )

polysaccharide biosynthesis protein CapD

NC_008254
(Chelativorans sp. BNC1)

9e-70

479) wbiI
( YP_003810290.1 )

epimerase/dehydratase

NC_014366
(gamma proteobacterium HdN1)

2e-69

480) Dshi_3857
( YP_001542066.1 )

polysaccharide biosynthesis protein CapD

NC_009956
(Dinoroseobacter shibae DFL 12)

2e-69

481) Spica_1447
( YP_004698100.1 )

polysaccharide biosynthesis protein CapD

NC_015732
(Treponema caldaria DSM 7334)

1e-67

482) TREAZ_0660
( YP_004527191.1 )

putative epimerase/dehydratase WbiI

NC_015577
(Treponema azotonutricium ZAS-9)

3e-67

483) Sulku_2414
( YP_004061274.1 )

polysaccharide biosynthesis protein capd

NC_014762
(Sulfuricurvum kujiense DSM 16994)

1e-66

484) TPE_2560
( YP_008436168.1 )

capsular polysaccharide biosynthesis protein

NC_022097
(Treponema pedis T A4)

3e-64

485) SpiGrapes_1668
( YP_005062481.1 )

putative nucleoside-diphosphate sugar epimerase

NC_016633
(Sphaerochaeta pleomorpha Grapes)

2e-63

486) TDE0714
( NP_971326.1 )

capsular polysaccharide biosynthesis protein

NC_002967
(Treponema denticola ATCC 35405)

2e-63

487) B841_09350
( YP_008371830.1 )

nucleoside-diphosphate sugar epimerase

NC_021915
(Corynebacterium maris DSM 45190)

2e-57

• Sequence Alignments

1) SSP0063 in NC_007350


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  710 bits (2684),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 441/595 (75%), Positives = 530/595 (90%), Gaps = 1/595 (0%)

Query  1    MKYISIKQRFMMLLFIDSIIVTFSVFLGYYILEPFFKGYSINVlilsslillisHHVFAQ  60
            M  IS K RF++L++IDS+IVTFSVFLGY ILEP+FKGYSI++L+LSS+ILL+SHH+FA 
Sbjct  1    MTSISAKLRFLILIIIDSFIVTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAY  60

Query  61   IFDLYHRAWEYASVSELILIVKSVTSSIVATGIIVPIFTQQAPFLRLYFITWMMHLLLIG  120
            +F+LYHRAWEYASVSEL+ ++K+VTSSIV T ++V+++  ++PFLRLYFITWMMHLLLIG
Sbjct  61   VFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIG  120

Query  121  GSRLSWRIYRKTFISKEGKKKPTLIVGGGRGGSLLIRQMMNTPYMGMEPVLVVDDDSNKQ  180
            GSRL WR+YR+ FI +   KK+TL+VG+G+GGS+LIR+M+ +  M M+PVL VDDD NKQ
Sbjct  121  GSRLFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQ  180

Query  181  KMSIASGVKVQGCIKDIPELVkkfnikkiiiaiPTLSQQRLREINKLCEGTNVEVFKMPN  240
            KM+I+  VKVQG + DIPELVKKF IKKIIIAIPTLSQ+RL EINK+C+   VE+FKMPN
Sbjct  181  KMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPN  240

Query  241  IENVMSGEIEVNKLKKVEVEDLLGRDPVELDMASISKELTHKTILVTGAGGSIGSEICRQ  300
            IE+V+SGE+EVN+LKKVEVEDLLGRDPVELDMA IS+ELT+KTILVTGAGGSIGSEICRQ
Sbjct  241  IEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQ  300

Query  301  VCKFTPDRIMLLGHGENSIYHIHQELIGLYKEEIEVIPIIADVQDKERMKKVMQAYKPYV  360
            V KF P++I+LLGHGENSIY IHQEL   Y + IE +P+IADVQ+K R+  VM+ +KPY 
Sbjct  301  VSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYA  360

Query  361  VYHAAAHKHVPLMEYNPQEAIKNNVLGTRNTAEAAKLAEVSKFVMVSTDKAVNPPNVMGA  420
            VYHAAAHKHVPLMEYNP+EAI+NN+LGT+N AE+AK +EVSKFVM+STDKAVNP+NVMGA
Sbjct  361  VYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGA  420

Query  421  SKRVAEMVIQSMNNETSKTDFVAVRFGNVLGSRGSVIPLFKKQIEAGGPVTVTHPGMTRY  480
            +KR+AEMVIQS+N++ SKT FVAVRFGNVLGSRGSVIPLFK+QIE+GGPVTVTHP MTRY
Sbjct  421  TKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRY  480

Query  481  FMTIPEASRLVLQAGALATGGEIFVLDMGKPVKIVDLAKNLIRLSGYKEEDIGIEFSGIR  540
            FMTIPEASRLVLQAGALA GGE+FVLDMGKPVKIVDLAKNLIRLSG KEEDIGIEFSGIR
Sbjct  481  FMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIR  540

Query  541  SGEKLFEELLNKDEIHPEQVYEKIYRGKVQKIEKEELYNKIDDFLINESVRDEII  595
            +GEKL+EELLNK+EIHP+QVYEKIYRGKV+   K E+   ++D LIN+  ++ ++
Sbjct  541  PGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVED-LINNFSKEKLL  594

2) capD in NC_012121


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  672 bits (2541),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 417/601 (70%), Positives = 535/601 (90%), Gaps = 2/601 (0%)

Query  1    MSKIPVRQQRLIFFLIIDSLIVAFSVFLSYSILEPYFRGYsltllilsslvllcsHHIFA  60
            M+ I+ +  R+++++IIDS+IV+FSVFL+Y+ILEPYF+GYS+ LL+LSS++LL SHHIFA
Sbjct  1    MTSISAKL-RFLILIIIDSFIVTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFA  59

Query  61   SVFNLYHRAWEYASINEMFVIVKAVTCSMALTVLIVPFFTHEGPFLRLYFITWMMHILLI  120
             VFNLYHRAWEYAS++E+  ++KAVT S+ +T+L+V+++  E+PFLRLYFITWMMH+LLI
Sbjct  60   YVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLI  119

Query  121  GGSRLSWRIFNRTVNRRGRKSKNTLVIGAGAGGSMLVQQMLKRPGMGMEPVLAVDDDPNK  180
            GGSRL WR++ R     +   K TLV+GAG GGS+L+++ML+  +M M+PVLAVDDD NK
Sbjct  120  GGSRLFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNK  179

Query  181  QKLTITEGVKVQGKIEDVPDLVRKYRikkiiiaiPTLSQKRLREINEICENLGVTVLKMP  240
            QK+TITE VKVQG +ED+P+LV+K+RIKKIIIAIPTLSQKRL EIN IC+  GV ++KMP
Sbjct  180  QKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMP  239

Query  241  NIEEVMSGELEVNQLKKVEVEDLLGRDPVELDMQLISKELTHQTIMVTGAGGSIGSEICQ  300
            NIE+V+SGELEVN+LKKVEVEDLLGRDPVELDM LIS+ELT++TI+VTGAGGSIGSEIC+
Sbjct  240  NIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICR  299

Query  301  QVCRFAPARIILLGHGENSIYLIHQELQKQYGDQIDIVPVIADIQDRSRMFKILDHYQPY  360
            QV +F P +IILLGHGENSIY IHQEL K YG++I++VPVIAD+Q+++R++ ++++++PY
Sbjct  300  QVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPY  359

Query  361  VVYHAAAHKHVPMMEYNPSEAIKNNVMGTKNTAEAARHARVSKFVMISTDKAVNPPNVMG  420
             VYHAAAHKHVP+MEYNP EAI+NN++GTKN AE+A+++ VSKFVMISTDKAVNP+NVMG
Sbjct  360  AVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMG  419

Query  421  ASKRAAEMIVQSMNEDNCKTDFVAVRFGNVLGSRGSVIPLFKKQIEAGGPITVTHPDITR  480
            A+KR AEM++QS+NEDN KT FVAVRFGNVLGSRGSVIPLFK+QIE+GGP+TVTHP++TR
Sbjct  420  ATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTR  479

Query  481  YFMTIPEAARLVLQAGAIAEGGEVFVLDMGEPVKIVDLAKNLIRLSGYKDGDIEIQFTGL  540
            YFMTIPEA+RLVLQAGA+A+GGEVFVLDMG PVKIVDLAKNLIRLSG K+ DI I+F+G+
Sbjct  480  YFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGI  539

Query  541  RPGEKLYeelldedeIHPEQVYEKIYRGKVETMKNDDVLRILDEIIHSKDYKQKLIDLAN  600
            RPGEKLYEELL+ +EIHP+QVYEKIYRGKV+   + +V  I++++I++   K+KL+ +AN
Sbjct  540  RPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFS-KEKLLKIAN  598

Query  601  H  601
            +
Sbjct  599  R  599

3) SAMSHR1132_01260 in NC_016941


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  669 bits (2528),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 423/578 (74%), Positives = 540/578 (94%), Gaps = 0/578 (0%)

Query  21   VTVSVFVSYYILEPYFKTYSVKLLILAAVSLFISHHISAFIFNMYHRAWEYASVSELILI  80
            VT SVF++Y ILEPYFK YS+ LL+L++V L++SHHI A++FN+YHRAWEYASVSEL+ +
Sbjct  21   VTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEYASVSELMSV  80

Query  81   VKAvttsivitmivvtivtGNRPFFRLYLITWMMHLILIGGSRLFWRIYRKYLGGKSFNK  140
            +KAVT+SIV+T+++V+++ ++ PF+RLY+ITWMMHL+LIGGSRLFWR+YR+Y+ +++ +K
Sbjct  81   LKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEK  140

Query  141  KTTLVVGAGQAGSMLIRQMLKSDEMKLEPVLAVDDDEHKRNITITEGVKVQGKIADIPEL  200
            K+TLVVGAGQ+GS+LIR+ML+S++M+++PVLAVDDD +K+++TITE VKVQG + DIPEL
Sbjct  141  KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPEL  200

Query  201  VkkykikkiiiaiPTIGQGRLKEINNICHLDGVELLKMPNIEDVMSGELEVNQLKKVEVE  260
            VKK++IKKIIIAIPT++Q RL+EIN+IC+++GVEL+KMPNIEDV+SGELEVN+LKKVEVE
Sbjct  201  VKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVE  260

Query  261  DLLGRDPVELDMDMISKELTNKTILVTGAGGSIGSEICRQVCNFYPERIILLGHGENSIY  320
            DLLGRDPVELDM +IS+ELTNKTILVTGAGGSIGSEICRQV +F P++IILLGHGENSIY
Sbjct  261  DLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIY  320

Query  321  LINRELRNRFGKHFDIVPVIADVQNRARMFEIMDQykpyavyhaaahkhvpLMEYNPEEA  380
             I++EL + +G+++++VPVIADVQN++R++E+M+++KPYAVYHAAAHKHVPLMEYNP+EA
Sbjct  321  SIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEA  380

Query  381  VRNNILGTKNTAEAAKHAGVKKFVMISTDKAVNPPNVMGASKRIAEMIIQSLNDETHRTD  440
            +RNNILGTKN AE+AK++ V KFVMISTDKAVNP+NVMGA+KRIAEM+IQSLN++  +T 
Sbjct  381  IRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTS  440

Query  441  FVAVRFGNVLGSRGSVIPLFKSQIEAGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAEG  500
            FVAVRFGNVLGSRGSVIPLFK+QIE+GGPVTVTHPEMTRYFMTIPEASRLVLQAGALA+G
Sbjct  441  FVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQG  500

Query  501  GEVFVLDMGEPVKIVDLARNLIKLSGKKEEDIRITYTGIRPGEKMFEELMNKDEVHPEQV  560
            GEVFVLDMG PVKIVDLA+NLI+LSGKKEEDI I ++GIRPGEK++EEL+NK+E+HP+QV
Sbjct  501  GEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQV  560

Query  561  YEKIYRGKVKHMTSNQVEAIIQDIVNDFSKEKIINYAN  598
            YEKIYRGKV H    +V+ I++D++N+FSKEK+++ AN
Sbjct  561  YEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLKIAN  598

4) SLGD_00326 in NC_013893


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  667 bits (2520),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 429/598 (72%), Positives = 541/598 (91%), Gaps = 0/598 (0%)

Query  1    MNKLNARVRLFALIIIDSLIVAFSVFICYNILEPFFKGYANKililtsillliAHHVFAY  60
            M  ++A++R++ LIIIDS+IV+FSVF+ Y ILEP+FKGY+  +L+L+S++LL++HH+FAY
Sbjct  1    MTSISAKLRFLILIIIDSFIVTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAY  60

Query  61   IFNLYHRAWEYASVNELLIIVESVTCSILATVILVPVFTGHPPFFRLYLITWMMVLILIG  120
            +FNLYHRAWEYASV+EL+ ++ +VT SI+ T++LV+++ +++PF+RLY+ITWMM L+LIG
Sbjct  61   VFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIG  120

Query  121  GSRISWRVTRKFVVGKHQKKKPTLIVGAGRGGSLLIRQMLRSPEMGLEPVLAVDDDPQKR  180
            GSR+ WRV R++ +++   KK+TL+VGAG+GGS+LIR+MLRS +M ++PVLAVDDD +K+
Sbjct  121  GSRLFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQ  180

Query  181  KLTIADGVKVQGTIDDIPNLVNKFRIKRIIIAIPTLKPNRLKEINDICNSTGIELFKMPS  240
            K+TI++ VKVQG ++DIP+LV+KFRIK+IIIAIPTL  +RL+EIN ICN  G+ELFKMP+
Sbjct  181  KMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPN  240

Query  241  IEQVLVGELEVNQLKRVEVEDLLGREPVELDMAMISKELTHKTIMVTGAGGSIGSEICRQ  300
            IE+VL GELEVN+LK+VEVEDLLGR+PVELDMA+IS+ELT+KTI+VTGAGGSIGSEICRQ
Sbjct  241  IEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQ  300

Query  301  VCKFEPDCILLLGHGENSIYLIHQELNaiykdkiriipiiadVQNPERIQDVMNRykpya  360
            V KF+P+ I+LLGHGENSIY IHQEL+  Y ++I ++P+IADVQN  RI +VMN +KPYA
Sbjct  301  VSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYA  360

Query  361  vyhaaahkhvpLMEYNPIEAFRNNVLGTRNVAIAAKTAGVRKFVMISTDKAVNPPNVMGA  420
            VYHAAAHKHVPLMEYNP EA+RNN+LGT+NVA +AK + V KFVMISTDKAVNP+NVMGA
Sbjct  361  VYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGA  420

Query  421  SKRLAEMVVQSLNEENSKTDFVAVRFGNVLGSRGSVIPLFKKQIEAGGPVTVTHPDMTRY  480
            +KR+AEMV+QSLNE+NSKT FVAVRFGNVLGSRGSVIPLFK+QIE+GGPVTVTHP+MTRY
Sbjct  421  TKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRY  480

Query  481  FMTIPEASRLVLQAGALAQGGEIFVLDMGEPVKIVDLAKNLIRLSGKSEDDIQIKFTGIR  540
            FMTIPEASRLVLQAGALAQGGE+FVLDMG PVKIVDLAKNLIRLSGK E+DI I F+GIR
Sbjct  481  FMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIR  540

Query  541  PGEKMYEELLNENEIHPEQVYEKIYRGKVRNFSKDEVEAIINDLVKDFKKEKIIKIAN  598
            PGEK+YEELLN NEIHP+QVYEKIYRGKV ++ K EV+ I++DL+++F KEK++KIAN
Sbjct  541  PGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLKIAN  598

5) SAAG_00635 in NC_022113


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  660 bits (2495),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 423/578 (74%), Positives = 539/578 (94%), Gaps = 0/578 (0%)

Query  21   VTFSVFVSYYILEPYFKTYSVKllilaaislfisHHISAFIFNMYHRAWEYASVSELILI  80
            VTFSVF++Y ILEPYFK YS+ LL+L+++ L++SHHI A++FN+YHRAWEYASVSEL+ +
Sbjct  21   VTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEYASVSELMSV  80

Query  81   VKAvttsivitmvfvtivtGNRPFFRLYLITWMMHLILIGGSRLFWRIYRKYLGGKSFNK  140
            +KAVT+SIV+T+++V+++ ++ PF+RLY+ITWMMHL+LIGGSRLFWR+YR+Y+ +++ +K
Sbjct  81   LKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEK  140

Query  141  KPTLVVGAGQAGSMLIRQMLKSDEMKLEPVLAVDDDEHKRNITITEGVKVQGKIADIPEL  200
            K+TLVVGAGQ+GS+LIR+ML+S++M+++PVLAVDDD +K+++TITE VKVQG + DIPEL
Sbjct  141  KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPEL  200

Query  201  VRkykikkiiiaiptiGQERLKEINNICHMDGVELLKMPNIEDVMSGELEVNQLKKVEVE  260
            V+K++IKKIIIAIPT++Q RL+EIN+IC+++GVEL+KMPNIEDV+SGELEVN+LKKVEVE
Sbjct  201  VKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVE  260

Query  261  DLLGRDPVELDMDMISNELTNKTILVTGAGGSIGSEICRQVCNFYPERIILLGHGENSIY  320
            DLLGRDPVELDM +IS ELTNKTILVTGAGGSIGSEICRQV +F P++IILLGHGENSIY
Sbjct  261  DLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIY  320

Query  321  LINRELRNRFGKNVDIVPIIADVQNRARMFEIMEMykpyavyhaaahkhvpLMEDNPEEA  380
             I++EL + +G+ +++VP+IADVQN++R++E+M+ +KPYAVYHAAAHKHVPLME NP+EA
Sbjct  321  SIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEA  380

Query  381  VRNNILGTKNTAEAAKNAEVKKFVMISTDKAVNPPNVMGASKRIAEMIIQSLNDETHRTN  440
            +RNNILGTKN AE+AK++EV KFVMISTDKAVNP+NVMGA+KRIAEM+IQSLN++  +T+
Sbjct  381  IRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTS  440

Query  441  FVAVRFGNVLGSRGSVIPLFKSQIEEGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAEG  500
            FVAVRFGNVLGSRGSVIPLFK+QIE GGPVTVTHPEMTRYFMTIPEASRLVLQAGALA+G
Sbjct  441  FVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQG  500

Query  501  GEVFVLDMGEPVKIVDLARNLIKLSGKKEDDIRITFTGIRPGEKMYEELMNKDEIHPEQV  560
            GEVFVLDMG PVKIVDLA+NLI+LSGKKE+DI I F+GIRPGEK+YEEL+NK+EIHP+QV
Sbjct  501  GEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQV  560

Query  561  FEKIYRGKVQHMKCNEVEAIIQDIVNDFSKEKIINYAN  598
            +EKIYRGKV+H    EV+ I++D++N+FSKEK+++ AN
Sbjct  561  YEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLKIAN  598

6) capD in NC_021670


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  660 bits (2494),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 423/578 (74%), Positives = 539/578 (94%), Gaps = 0/578 (0%)

Query  25   VTFSVFVSYYILEPYFKTYSVKllilaaislfisHHISAFIFNMYHRAWEYASVSELILI  84
            VTFSVF++Y ILEPYFK YS+ LL+L+++ L++SHHI A++FN+YHRAWEYASVSEL+ +
Sbjct  21   VTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEYASVSELMSV  80

Query  85   VKAvttsivitmvfvtivtGNRPFFRLYLITWMMHLILIGGSRLFWRIYRKYLGGKSFNK  144
            +KAVT+SIV+T+++V+++ ++ PF+RLY+ITWMMHL+LIGGSRLFWR+YR+Y+ +++ +K
Sbjct  81   LKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEK  140

Query  145  KPTLVVGAGQAGSMLIRQMLKSDEMKLEPVLAVDDDEHKRNITITEGVKVQGKIADIPEL  204
            K+TLVVGAGQ+GS+LIR+ML+S++M+++PVLAVDDD +K+++TITE VKVQG + DIPEL
Sbjct  141  KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPEL  200

Query  205  VRkykikkiiiaiptiGQERLKEINNICHMDGVELLKMPNIEDVMSGELEVNQLKKVEVE  264
            V+K++IKKIIIAIPT++Q RL+EIN+IC+++GVEL+KMPNIEDV+SGELEVN+LKKVEVE
Sbjct  201  VKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVE  260

Query  265  DLLGRDPVELDMDMISNELTNKTILVTGAGGSIGSEICRQVCNFYPERIILLGHGENSIY  324
            DLLGRDPVELDM +IS ELTNKTILVTGAGGSIGSEICRQV +F P++IILLGHGENSIY
Sbjct  261  DLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIY  320

Query  325  LINRELRNRFGKNVDIVPIIADVQNRARMFEIMEMykpyavyhaaahkhvpLMEDNPEEA  384
             I++EL + +G+ +++VP+IADVQN++R++E+M+ +KPYAVYHAAAHKHVPLME NP+EA
Sbjct  321  SIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEA  380

Query  385  VRNNILGTKNTAEAAKNAEVKKFVMISTDKAVNPPNVMGASKRIAEMIIQSLNDETHRTN  444
            +RNNILGTKN AE+AK++EV KFVMISTDKAVNP+NVMGA+KRIAEM+IQSLN++  +T+
Sbjct  381  IRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTS  440

Query  445  FVAVRFGNVLGSRGSVIPLFKSQIEEGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAEG  504
            FVAVRFGNVLGSRGSVIPLFK+QIE GGPVTVTHPEMTRYFMTIPEASRLVLQAGALA+G
Sbjct  441  FVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQG  500

Query  505  GEVFVLDMGEPVKIVDLARNLIKLSGKKEDDIRITFTGIRPGEKMYEELMNKDEIHPEQV  564
            GEVFVLDMG PVKIVDLA+NLI+LSGKKE+DI I F+GIRPGEK+YEEL+NK+EIHP+QV
Sbjct  501  GEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQV  560

Query  565  FEKIYRGKVQHMKCNEVEAIIQDIVNDFSKEKIINYAN  602
            +EKIYRGKV+H    EV+ I++D++N+FSKEK+++ AN
Sbjct  561  YEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLKIAN  598

7) SAT0131_00142 in NC_017347


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  660 bits (2495),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 423/578 (74%), Positives = 539/578 (94%), Gaps = 0/578 (0%)

Query  21   VTFSVFVSYYILEPYFKTYSVKllilaaislfisHHISAFIFNMYHRAWEYASVSELILI  80
            VTFSVF++Y ILEPYFK YS+ LL+L+++ L++SHHI A++FN+YHRAWEYASVSEL+ +
Sbjct  21   VTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEYASVSELMSV  80

Query  81   VKAvttsivitmvfvtivtGNRPFFRLYLITWMMHLILIGGSRLFWRIYRKYLGGKSFNK  140
            +KAVT+SIV+T+++V+++ ++ PF+RLY+ITWMMHL+LIGGSRLFWR+YR+Y+ +++ +K
Sbjct  81   LKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEK  140

Query  141  KPTLVVGAGQAGSMLIRQMLKSDEMKLEPVLAVDDDEHKRNITITEGVKVQGKIADIPEL  200
            K+TLVVGAGQ+GS+LIR+ML+S++M+++PVLAVDDD +K+++TITE VKVQG + DIPEL
Sbjct  141  KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPEL  200

Query  201  VRkykikkiiiaiptiGQERLKEINNICHMDGVELLKMPNIEDVMSGELEVNQLKKVEVE  260
            V+K++IKKIIIAIPT++Q RL+EIN+IC+++GVEL+KMPNIEDV+SGELEVN+LKKVEVE
Sbjct  201  VKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVE  260

Query  261  DLLGRDPVELDMDMISNELTNKTILVTGAGGSIGSEICRQVCNFYPERIILLGHGENSIY  320
            DLLGRDPVELDM +IS ELTNKTILVTGAGGSIGSEICRQV +F P++IILLGHGENSIY
Sbjct  261  DLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIY  320

Query  321  LINRELRNRFGKNVDIVPIIADVQNRARMFEIMEMykpyavyhaaahkhvpLMEDNPEEA  380
             I++EL + +G+ +++VP+IADVQN++R++E+M+ +KPYAVYHAAAHKHVPLME NP+EA
Sbjct  321  SIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEA  380

Query  381  VRNNILGTKNTAEAAKNAEVKKFVMISTDKAVNPPNVMGASKRIAEMIIQSLNDETHRTN  440
            +RNNILGTKN AE+AK++EV KFVMISTDKAVNP+NVMGA+KRIAEM+IQSLN++  +T+
Sbjct  381  IRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTS  440

Query  441  FVAVRFGNVLGSRGSVIPLFKSQIEEGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAEG  500
            FVAVRFGNVLGSRGSVIPLFK+QIE GGPVTVTHPEMTRYFMTIPEASRLVLQAGALA+G
Sbjct  441  FVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQG  500

Query  501  GEVFVLDMGEPVKIVDLARNLIKLSGKKEDDIRITFTGIRPGEKMYEELMNKDEIHPEQV  560
            GEVFVLDMG PVKIVDLA+NLI+LSGKKE+DI I F+GIRPGEK+YEEL+NK+EIHP+QV
Sbjct  501  GEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQV  560

Query  561  FEKIYRGKVQHMKCNEVEAIIQDIVNDFSKEKIINYAN  598
            +EKIYRGKV+H    EV+ I++D++N+FSKEK+++ AN
Sbjct  561  YEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLKIAN  598

8) capD in NC_017331


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  660 bits (2495),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 423/578 (74%), Positives = 539/578 (94%), Gaps = 0/578 (0%)

Query  21   VTFSVFVSYYILEPYFKTYSVKllilaaislfisHHISAFIFNMYHRAWEYASVSELILI  80
            VTFSVF++Y ILEPYFK YS+ LL+L+++ L++SHHI A++FN+YHRAWEYASVSEL+ +
Sbjct  21   VTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEYASVSELMSV  80

Query  81   VKAvttsivitmvfvtivtGNRPFFRLYLITWMMHLILIGGSRLFWRIYRKYLGGKSFNK  140
            +KAVT+SIV+T+++V+++ ++ PF+RLY+ITWMMHL+LIGGSRLFWR+YR+Y+ +++ +K
Sbjct  81   LKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEK  140

Query  141  KPTLVVGAGQAGSMLIRQMLKSDEMKLEPVLAVDDDEHKRNITITEGVKVQGKIADIPEL  200
            K+TLVVGAGQ+GS+LIR+ML+S++M+++PVLAVDDD +K+++TITE VKVQG + DIPEL
Sbjct  141  KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPEL  200

Query  201  VRkykikkiiiaiptiGQERLKEINNICHMDGVELLKMPNIEDVMSGELEVNQLKKVEVE  260
            V+K++IKKIIIAIPT++Q RL+EIN+IC+++GVEL+KMPNIEDV+SGELEVN+LKKVEVE
Sbjct  201  VKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVE  260

Query  261  DLLGRDPVELDMDMISNELTNKTILVTGAGGSIGSEICRQVCNFYPERIILLGHGENSIY  320
            DLLGRDPVELDM +IS ELTNKTILVTGAGGSIGSEICRQV +F P++IILLGHGENSIY
Sbjct  261  DLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIY  320

Query  321  LINRELRNRFGKNVDIVPIIADVQNRARMFEIMEMykpyavyhaaahkhvpLMEDNPEEA  380
             I++EL + +G+ +++VP+IADVQN++R++E+M+ +KPYAVYHAAAHKHVPLME NP+EA
Sbjct  321  SIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEA  380

Query  381  VRNNILGTKNTAEAAKNAEVKKFVMISTDKAVNPPNVMGASKRIAEMIIQSLNDETHRTN  440
            +RNNILGTKN AE+AK++EV KFVMISTDKAVNP+NVMGA+KRIAEM+IQSLN++  +T+
Sbjct  381  IRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTS  440

Query  441  FVAVRFGNVLGSRGSVIPLFKSQIEEGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAEG  500
            FVAVRFGNVLGSRGSVIPLFK+QIE GGPVTVTHPEMTRYFMTIPEASRLVLQAGALA+G
Sbjct  441  FVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQG  500

Query  501  GEVFVLDMGEPVKIVDLARNLIKLSGKKEDDIRITFTGIRPGEKMYEELMNKDEIHPEQV  560
            GEVFVLDMG PVKIVDLA+NLI+LSGKKE+DI I F+GIRPGEK+YEEL+NK+EIHP+QV
Sbjct  501  GEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQV  560

Query  561  FEKIYRGKVQHMKCNEVEAIIQDIVNDFSKEKIINYAN  598
            +EKIYRGKV+H    EV+ I++D++N+FSKEK+++ AN
Sbjct  561  YEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLKIAN  598

9) cap5D in NC_017341


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  659 bits (2491),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 422/578 (74%), Positives = 539/578 (94%), Gaps = 0/578 (0%)

Query  1    MTFSVFVSYYILEPYFKTYSVKllilaaislfisHHISAFIFNMYHRAWEYASVSELILI  60
            +TFSVF++Y ILEPYFK YS+ LL+L+++ L++SHHI A++FN+YHRAWEYASVSEL+ +
Sbjct  21   VTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEYASVSELMSV  80

Query  61   VKAvttsivitmvfvtivtGNRPFFRLYLITWMMHLILIGGSRLFWRIYRKYLGGKSFNK  120
            +KAVT+SIV+T+++V+++ ++ PF+RLY+ITWMMHL+LIGGSRLFWR+YR+Y+ +++ +K
Sbjct  81   LKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEK  140

Query  121  KPTLVVGAGQAGSMLIRQMLKSDEMKLEPVLAVDDDEHKRNITITEGVKVQGKIADIPEL  180
            K+TLVVGAGQ+GS+LIR+ML+S++M+++PVLAVDDD +K+++TITE VKVQG + DIPEL
Sbjct  141  KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPEL  200

Query  181  VRkykikkiiiaiptiGQERLKEINNICHMDGVELLKMPNIEDVMSGELEVNQLKKVEVE  240
            V+K++IKKIIIAIPT++Q RL+EIN+IC+++GVEL+KMPNIEDV+SGELEVN+LKKVEVE
Sbjct  201  VKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVE  260

Query  241  DLLGRDPVELDMDMISNELTNKTILVTGAGGSIGSEICRQVCNFYPERIILLGHGENSIY  300
            DLLGRDPVELDM +IS ELTNKTILVTGAGGSIGSEICRQV +F P++IILLGHGENSIY
Sbjct  261  DLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIY  320

Query  301  LINRELRNRFGKNVDIVPIIADVQNRARMFEIMEMykpyavyhaaahkhvpLMEDNPEEA  360
             I++EL + +G+ +++VP+IADVQN++R++E+M+ +KPYAVYHAAAHKHVPLME NP+EA
Sbjct  321  SIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEA  380

Query  361  VRNNILGTKNTAEAAKNAEVKKFVMISTDKAVNPPNVMGASKRIAEMIIQSLNDETHRTN  420
            +RNNILGTKN AE+AK++EV KFVMISTDKAVNP+NVMGA+KRIAEM+IQSLN++  +T+
Sbjct  381  IRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTS  440

Query  421  FVAVRFGNVLGSRGSVIPLFKSQIEEGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAEG  480
            FVAVRFGNVLGSRGSVIPLFK+QIE GGPVTVTHPEMTRYFMTIPEASRLVLQAGALA+G
Sbjct  441  FVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQG  500

Query  481  GEVFVLDMGEPVKIVDLARNLIKLSGKKEDDIRITFTGIRPGEKMYEELMNKDEIHPEQV  540
            GEVFVLDMG PVKIVDLA+NLI+LSGKKE+DI I F+GIRPGEK+YEEL+NK+EIHP+QV
Sbjct  501  GEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQV  560

Query  541  FEKIYRGKVQHMKCNEVEAIIQDIVNDFSKEKIINYAN  578
            +EKIYRGKV+H    EV+ I++D++N+FSKEK+++ AN
Sbjct  561  YEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLKIAN  598

10) capD in NC_002952


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  659 bits (2490),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 423/578 (74%), Positives = 538/578 (94%), Gaps = 0/578 (0%)

Query  21   VTFSVFVSYYILEPYFKTYSVKllilaaislfisHHISAFIFNMYHRAWEYASVSELILI  80
            VTFSVF++Y ILEPYFK YS+ LL+L+++ L++SHHI A++FN+YHRAWEYASVSEL+ +
Sbjct  21   VTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEYASVSELMSV  80

Query  81   VKAvttsivitmvfvtivtGNRPFFRLYLITWMMHLILIGGSRLFWRIYRKYLGGKSFNK  140
            +KAVT+SIV+T+++V+++ ++ PF+RLY+ITWMMHL+LIGGSRLFWR+YR+Y+ +++ +K
Sbjct  81   LKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEK  140

Query  141  KPTLVVGAGQAGSMLIRKMLKSDEMKLEPVLAVDDDEHKRNITITEGVKVQGKIADIPEL  200
            K+TLVVGAGQ+GS+LIR ML+S++M+++PVLAVDDD +K+++TITE VKVQG + DIPEL
Sbjct  141  KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPEL  200

Query  201  VRkykikkiiiaiptiGQERLKEINNICHMDGVELLKMPNIEDVMSGELEVNQLKKVEVE  260
            V+K++IKKIIIAIPT++Q RL+EIN+IC+++GVEL+KMPNIEDV+SGELEVN+LKKVEVE
Sbjct  201  VKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVE  260

Query  261  DLLGRDPVELDMDMISNELTNKTILVTGAGGSIGSEICRQVCNFYPERIILLGHGENSIY  320
            DLLGRDPVELDM +IS ELTNKTILVTGAGGSIGSEICRQV +F P++IILLGHGENSIY
Sbjct  261  DLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIY  320

Query  321  LINRELRNRFGKNVDIVPIIADVQNRARMFEIMEMykpyavyhaaahkhvpLMEDNPEEA  380
             I++EL + +G+ +++VP+IADVQN++R++E+M+ +KPYAVYHAAAHKHVPLME NP+EA
Sbjct  321  SIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEA  380

Query  381  VRNNILGTKNTAEAAKNAEVKKFVMISTDKAVNPPNVMGASKRIAEMIIQSLNDETHRTN  440
            +RNNILGTKN AE+AK++EV KFVMISTDKAVNP+NVMGA+KRIAEM+IQSLN++  +T+
Sbjct  381  IRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTS  440

Query  441  FVAVRFGNVLGSRGSVIPLFKSQIEEGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAEG  500
            FVAVRFGNVLGSRGSVIPLFK+QIE GGPVTVTHPEMTRYFMTIPEASRLVLQAGALA+G
Sbjct  441  FVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQG  500

Query  501  GEVFVLDMGEPVKIVDLARNLIKLSGKKEDDIRITFTGIRPGEKMYEELMNKDEIHPEQV  560
            GEVFVLDMG PVKIVDLA+NLI+LSGKKE+DI I F+GIRPGEK+YEEL+NK+EIHP+QV
Sbjct  501  GEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQV  560

Query  561  FEKIYRGKVQHMKCNEVEAIIQDIVNDFSKEKIINYAN  598
            +EKIYRGKV+H    EV+ I++D++N+FSKEK+++ AN
Sbjct  561  YEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLKIAN  598

11) capD in NC_017342


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  659 bits (2490),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 423/578 (74%), Positives = 538/578 (94%), Gaps = 0/578 (0%)

Query  50   VTFSVFVSYYILEPYFKTYSVKllilaaislfisHHISAFIFNMYHRAWEYASVSELILI  109
            VTFSVF++Y ILEPYFK YS+ LL+L+++ L++SHHI A++FN+YHRAWEYASVSEL+ +
Sbjct  21   VTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEYASVSELMSV  80

Query  110  VKAvtisivitmvfvtivtGNRPFFRLYLITWMMHLILIGGSRLFWRIYRKYLGGKSFNK  169
            +KAVT SIV+T+++V+++ ++ PF+RLY+ITWMMHL+LIGGSRLFWR+YR+Y+ +++ +K
Sbjct  81   LKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEK  140

Query  170  KPTLVVGAGQAGSMLIRQMLKSDEMKLEPVLAVDDDEHKRNITITEGVKVQGKIADIPEL  229
            K+TLVVGAGQ+GS+LIR+ML+S++M+++PVLAVDDD +K+++TITE VKVQG + DIPEL
Sbjct  141  KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPEL  200

Query  230  VRkykikkiiiaiptiGQERLKEINNICHMDGVELLKMPNIEDVMSGELEVNQLKKVEVE  289
            V+K++IKKIIIAIPT++Q RL+EIN+IC+++GVEL+KMPNIEDV+SGELEVN+LKKVEVE
Sbjct  201  VKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVE  260

Query  290  DLLGRDPVELDMDMISNELTNKTILVTGAGGSIGSEICRQVCNFYPERIILLGHGENSIY  349
            DLLGRDPVELDM +IS ELTNKTILVTGAGGSIGSEICRQV +F P++IILLGHGENSIY
Sbjct  261  DLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIY  320

Query  350  LINRELRNRFGKNVDIVPIIADVQNRARMFEIMEMykpyavyhaaahkhvpLMEDNPEEA  409
             I++EL + +G+ +++VP+IADVQN++R++E+M+ +KPYAVYHAAAHKHVPLME NP+EA
Sbjct  321  SIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEA  380

Query  410  VRNNILGTKNTAEAAKNAEVKKFVMISTDKAVNPPNVMGASKRIAEMIIQSLNDETHRTN  469
            +RNNILGTKN AE+AK++EV KFVMISTDKAVNP+NVMGA+KRIAEM+IQSLN++  +T+
Sbjct  381  IRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTS  440

Query  470  FVAVRFGNVLGSRGSVIPLFKSQIEEGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAEG  529
            FVAVRFGNVLGSRGSVIPLFK+QIE GGPVTVTHPEMTRYFMTIPEASRLVLQAGALA+G
Sbjct  441  FVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQG  500

Query  530  GEVFVLDMGEPVKIVDLARNLIKLSGKKEDDIRITFTGIRPGEKMYEELMNKDEIHPEQV  589
            GEVFVLDMG PVKIVDLA+NLI+LSGKKE+DI I F+GIRPGEK+YEEL+NK+EIHP+QV
Sbjct  501  GEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQV  560

Query  590  FEKIYRGKVQHMKCNEVEAIIQDIVNDFSKEKIINYAN  627
            +EKIYRGKV+H    EV+ I++D++N+FSKEK+++ AN
Sbjct  561  YEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLKIAN  598

12) cap5D in NC_002951


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  659 bits (2491),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 420/578 (73%), Positives = 539/578 (94%), Gaps = 0/578 (0%)

Query  21   VTFSVFVSYYILEPYFKTYSVKllilaaislfisHHISAFIFNMYHRAWEYASVSELILI  80
            VTFSVF++Y ILEPYFK YS+ LL+L+++ L++SHHI A++FN+YHRAWEYASVSEL+ +
Sbjct  21   VTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEYASVSELMSV  80

Query  81   VKAvttsivitmvvvtivtGNRPFFRLYLITWMMHLILIGGSRLFWRIYRKYLGGKSFNK  140
            +KAVT+SIV+T+++V+++ ++ PF+RLY+ITWMMHL+LIGGSRLFWR+YR+Y+ +++ +K
Sbjct  81   LKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEK  140

Query  141  KPTLVVGAGQAGSMLIRQMLKSDEMKLEPVLAVDDDEHKRNITITEGVKVQGKIADIPEL  200
            K+TLVVGAGQ+GS+LIR+ML+S++M+++PVLAVDDD +K+++TITE VKVQG + DIPEL
Sbjct  141  KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPEL  200

Query  201  VRkykikkiiiaiptiGQERLKEINNICHMDGVELLKMPNIEDVMSGELEVNQLKKVEVE  260
            V+K++IKKIIIAIPT++Q RL+EIN+IC+++GVEL+KMPNIEDV+SGELEVN+LKKVEVE
Sbjct  201  VKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVE  260

Query  261  DLLGRDPVELDMDMISNELTNKTILVTGAGGSIGSEICRQVCNFYPERIILLGHGENSIY  320
            DLLGRDPVELDM +IS ELTNKTILVTGAGGSIGSEICRQV +F P++IILLGHGENSIY
Sbjct  261  DLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIY  320

Query  321  LINRELRNRFGKNVDIVPIIADVQNRARMFEIMETykpyavyhaaahkhvpLMEDNPEEA  380
             I++EL + +G+ +++VP+IADVQN++R++E+M+ +KPYAVYHAAAHKHVPLME NP+EA
Sbjct  321  SIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEA  380

Query  381  VRNNILGTKNTAEAAKNAEVKKFVMISTDKAVNPPNVMGASKRIAEMIIQSLNDETHRTN  440
            +RNNILGTKN AE+AK++EV KFVMISTDKAVNP+NVMGA+KRIAEM+IQSLN++  +T+
Sbjct  381  IRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTS  440

Query  441  FVAVRFGNVLGSRGSVIPLFKSQIEEGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAEG  500
            FVAVRFGNVLGSRGSVIPLFK+QIE GGPVTVTHPEMTRYFMTIPEASRLVLQAGALA+G
Sbjct  441  FVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQG  500

Query  501  GEVFVLDMGEPVKIVDLARNLIKLSGKKEDDIRITYTGIRPGEKMFEELMNKDEVHPEQV  560
            GEVFVLDMG PVKIVDLA+NLI+LSGKKE+DI I ++GIRPGEK++EEL+NK+E+HP+QV
Sbjct  501  GEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQV  560

Query  561  FEKIYRGKVQHMKCNEVEAIIQDIVNDFSKEKIINYAN  598
            +EKIYRGKV+H    EV+ I++D++N+FSKEK+++ AN
Sbjct  561  YEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLKIAN  598

13) SAS0127 in NC_002953


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  659 bits (2491),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 420/578 (73%), Positives = 539/578 (94%), Gaps = 0/578 (0%)

Query  21   VTFSVFVSYYILEPYFKTYSVKllilaaislfisHHISAFIFNMYHRAWEYASVSELILI  80
            VTFSVF++Y ILEPYFK YS+ LL+L+++ L++SHHI A++FN+YHRAWEYASVSEL+ +
Sbjct  21   VTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEYASVSELMSV  80

Query  81   VKAvttsivitmvvvtivtGNRPFFRLYLITWMMHLILIGGSRLFWRIYRKYLGGKSFNK  140
            +KAVT+SIV+T+++V+++ ++ PF+RLY+ITWMMHL+LIGGSRLFWR+YR+Y+ +++ +K
Sbjct  81   LKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEK  140

Query  141  KPTLVVGAGQAGSMLIRQMLKSDEMKLEPVLAVDDDEHKRNITITEGVKVQGKIADIPEL  200
            K+TLVVGAGQ+GS+LIR+ML+S++M+++PVLAVDDD +K+++TITE VKVQG + DIPEL
Sbjct  141  KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPEL  200

Query  201  VRkykikkiiiaiptiGQERLKEINNICHMDGVELLKMPNIEDVMSGELEVNQLKKVEVE  260
            V+K++IKKIIIAIPT++Q RL+EIN+IC+++GVEL+KMPNIEDV+SGELEVN+LKKVEVE
Sbjct  201  VKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVE  260

Query  261  DLLGRDPVELDMDMISNELTNKTILVTGAGGSIGSEICRQVCNFYPERIILLGHGENSIY  320
            DLLGRDPVELDM +IS ELTNKTILVTGAGGSIGSEICRQV +F P++IILLGHGENSIY
Sbjct  261  DLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIY  320

Query  321  LINRELRNRFGKNVDIVPIIADVQNRARMFEIMETykpyavyhaaahkhvpLMEENPEEA  380
             I++EL + +G+ +++VP+IADVQN++R++E+M+ +KPYAVYHAAAHKHVPLME NP+EA
Sbjct  321  SIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEA  380

Query  381  VRNNILGTKNTAEAAKNAEVKKFVMISTDKAVNPPNVMGASKRIAEMIIQSLNDETHRTN  440
            +RNNILGTKN AE+AK++EV KFVMISTDKAVNP+NVMGA+KRIAEM+IQSLN++  +T+
Sbjct  381  IRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTS  440

Query  441  FVAVRFGNVLGSRGSVIPLFKSQIEEGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAEG  500
            FVAVRFGNVLGSRGSVIPLFK+QIE GGPVTVTHPEMTRYFMTIPEASRLVLQAGALA+G
Sbjct  441  FVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQG  500

Query  501  GEVFVLDMGEPVKIVDLARNLIKLSGKKEDDIRITYTGIRPGEKMFEELMNKDEVHPEQV  560
            GEVFVLDMG PVKIVDLA+NLI+LSGKKE+DI I ++GIRPGEK++EEL+NK+E+HP+QV
Sbjct  501  GEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQV  560

Query  561  FEKIYRGKVQHMKCNEVEAIIQDIVNDFSKEKIINYAN  598
            +EKIYRGKV+H    EV+ I++D++N+FSKEK+++ AN
Sbjct  561  YEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLKIAN  598

14) cap8D in NC_003923


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  659 bits (2491),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 420/578 (73%), Positives = 539/578 (94%), Gaps = 0/578 (0%)

Query  21   VTFSVFVSYYILEPYFKTYSVKllilaaislfisHHISAFIFNMYHRAWEYASVSELILI  80
            VTFSVF++Y ILEPYFK YS+ LL+L+++ L++SHHI A++FN+YHRAWEYASVSEL+ +
Sbjct  21   VTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEYASVSELMSV  80

Query  81   VKAvttsivitmvvvtivtGNRPFFRLYLITWMMHLILIGGSRLFWRIYRKYLGGKSFNK  140
            +KAVT+SIV+T+++V+++ ++ PF+RLY+ITWMMHL+LIGGSRLFWR+YR+Y+ +++ +K
Sbjct  81   LKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEK  140

Query  141  KPTLVVGAGQAGSMLIRQMLKSDEMKLEPVLAVDDDEHKRNITITEGVKVQGKIADIPEL  200
            K+TLVVGAGQ+GS+LIR+ML+S++M+++PVLAVDDD +K+++TITE VKVQG + DIPEL
Sbjct  141  KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPEL  200

Query  201  VRkykikkiiiaiptiGQERLKEINNICHMDGVELLKMPNIEDVMSGELEVNQLKKVEVE  260
            V+K++IKKIIIAIPT++Q RL+EIN+IC+++GVEL+KMPNIEDV+SGELEVN+LKKVEVE
Sbjct  201  VKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVE  260

Query  261  DLLGRDPVELDMDMISNELTNKTILVTGAGGSIGSEICRQVCNFYPERIILLGHGENSIY  320
            DLLGRDPVELDM +IS ELTNKTILVTGAGGSIGSEICRQV +F P++IILLGHGENSIY
Sbjct  261  DLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIY  320

Query  321  LINRELRNRFGKNVDIVPIIADVQNRARMFEIMETykpyavyhaaahkhvpLMEENPEEA  380
             I++EL + +G+ +++VP+IADVQN++R++E+M+ +KPYAVYHAAAHKHVPLME NP+EA
Sbjct  321  SIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEA  380

Query  381  VRNNILGTKNTAEAAKNAEVKKFVMISTDKAVNPPNVMGASKRIAEMIIQSLNDETHRTN  440
            +RNNILGTKN AE+AK++EV KFVMISTDKAVNP+NVMGA+KRIAEM+IQSLN++  +T+
Sbjct  381  IRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTS  440

Query  441  FVAVRFGNVLGSRGSVIPLFKSQIEEGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAEG  500
            FVAVRFGNVLGSRGSVIPLFK+QIE GGPVTVTHPEMTRYFMTIPEASRLVLQAGALA+G
Sbjct  441  FVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQG  500

Query  501  GEVFVLDMGEPVKIVDLARNLIKLSGKKEDDIRITYTGIRPGEKMFEELMNKDEVHPEQV  560
            GEVFVLDMG PVKIVDLA+NLI+LSGKKE+DI I ++GIRPGEK++EEL+NK+E+HP+QV
Sbjct  501  GEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQV  560

Query  561  FEKIYRGKVQHMKCNEVEAIIQDIVNDFSKEKIINYAN  598
            +EKIYRGKV+H    EV+ I++D++N+FSKEK+++ AN
Sbjct  561  YEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLKIAN  598

15) SAOUHSC_00117 in NC_007795


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  659 bits (2491),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 420/578 (73%), Positives = 539/578 (94%), Gaps = 0/578 (0%)

Query  21   VTFSVFVSYYILEPYFKTYSVKllilaaislfisHHISAFIFNMYHRAWEYASVSELILI  80
            VTFSVF++Y ILEPYFK YS+ LL+L+++ L++SHHI A++FN+YHRAWEYASVSEL+ +
Sbjct  21   VTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEYASVSELMSV  80

Query  81   VKAvttsivitmvvvtivtGNRPFFRLYLITWMMHLILIGGSRLFWRIYRKYLGGKSFNK  140
            +KAVT+SIV+T+++V+++ ++ PF+RLY+ITWMMHL+LIGGSRLFWR+YR+Y+ +++ +K
Sbjct  81   LKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEK  140

Query  141  KPTLVVGAGQAGSMLIRQMLKSDEMKLEPVLAVDDDEHKRNITITEGVKVQGKIADIPEL  200
            K+TLVVGAGQ+GS+LIR+ML+S++M+++PVLAVDDD +K+++TITE VKVQG + DIPEL
Sbjct  141  KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPEL  200

Query  201  VRkykikkiiiaiptiGQERLKEINNICHMDGVELLKMPNIEDVMSGELEVNQLKKVEVE  260
            V+K++IKKIIIAIPT++Q RL+EIN+IC+++GVEL+KMPNIEDV+SGELEVN+LKKVEVE
Sbjct  201  VKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVE  260

Query  261  DLLGRDPVELDMDMISNELTNKTILVTGAGGSIGSEICRQVCNFYPERIILLGHGENSIY  320
            DLLGRDPVELDM +IS ELTNKTILVTGAGGSIGSEICRQV +F P++IILLGHGENSIY
Sbjct  261  DLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIY  320

Query  321  LINRELRNRFGKNVDIVPIIADVQNRARMFEIMETykpyavyhaaahkhvpLMEDNPEEA  380
             I++EL + +G+ +++VP+IADVQN++R++E+M+ +KPYAVYHAAAHKHVPLME NP+EA
Sbjct  321  SIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEA  380

Query  381  VRNNILGTKNTAEAAKNAEVKKFVMISTDKAVNPPNVMGASKRIAEMIIQSLNDETHRTN  440
            +RNNILGTKN AE+AK++EV KFVMISTDKAVNP+NVMGA+KRIAEM+IQSLN++  +T+
Sbjct  381  IRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTS  440

Query  441  FVAVRFGNVLGSRGSVIPLFKSQIEEGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAEG  500
            FVAVRFGNVLGSRGSVIPLFK+QIE GGPVTVTHPEMTRYFMTIPEASRLVLQAGALA+G
Sbjct  441  FVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQG  500

Query  501  GEVFVLDMGEPVKIVDLARNLIKLSGKKEDDIRITYTGIRPGEKMFEELMNKDEVHPEQV  560
            GEVFVLDMG PVKIVDLA+NLI+LSGKKE+DI I ++GIRPGEK++EEL+NK+E+HP+QV
Sbjct  501  GEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQV  560

Query  561  FEKIYRGKVQHMKCNEVEAIIQDIVNDFSKEKIINYAN  598
            +EKIYRGKV+H    EV+ I++D++N+FSKEK+++ AN
Sbjct  561  YEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLKIAN  598

16) SAVC_00530 in NC_016912


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  659 bits (2491),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 420/578 (73%), Positives = 539/578 (94%), Gaps = 0/578 (0%)

Query  21   VTFSVFVSYYILEPYFKTYSVKllilaaislfisHHISAFIFNMYHRAWEYASVSELILI  80
            VTFSVF++Y ILEPYFK YS+ LL+L+++ L++SHHI A++FN+YHRAWEYASVSEL+ +
Sbjct  21   VTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEYASVSELMSV  80

Query  81   VKAvttsivitmvvvtivtGNRPFFRLYLITWMMHLILIGGSRLFWRIYRKYLGGKSFNK  140
            +KAVT+SIV+T+++V+++ ++ PF+RLY+ITWMMHL+LIGGSRLFWR+YR+Y+ +++ +K
Sbjct  81   LKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEK  140

Query  141  KPTLVVGAGQAGSMLIRQMLKSDEMKLEPVLAVDDDEHKRNITITEGVKVQGKIADIPEL  200
            K+TLVVGAGQ+GS+LIR+ML+S++M+++PVLAVDDD +K+++TITE VKVQG + DIPEL
Sbjct  141  KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPEL  200

Query  201  VRkykikkiiiaiptiGQERLKEINNICHMDGVELLKMPNIEDVMSGELEVNQLKKVEVE  260
            V+K++IKKIIIAIPT++Q RL+EIN+IC+++GVEL+KMPNIEDV+SGELEVN+LKKVEVE
Sbjct  201  VKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVE  260

Query  261  DLLGRDPVELDMDMISNELTNKTILVTGAGGSIGSEICRQVCNFYPERIILLGHGENSIY  320
            DLLGRDPVELDM +IS ELTNKTILVTGAGGSIGSEICRQV +F P++IILLGHGENSIY
Sbjct  261  DLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIY  320

Query  321  LINRELRNRFGKNVDIVPIIADVQNRARMFEIMETykpyavyhaaahkhvpLMEDNPEEA  380
             I++EL + +G+ +++VP+IADVQN++R++E+M+ +KPYAVYHAAAHKHVPLME NP+EA
Sbjct  321  SIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEA  380

Query  381  VRNNILGTKNTAEAAKNAEVKKFVMISTDKAVNPPNVMGASKRIAEMIIQSLNDETHRTN  440
            +RNNILGTKN AE+AK++EV KFVMISTDKAVNP+NVMGA+KRIAEM+IQSLN++  +T+
Sbjct  381  IRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTS  440

Query  441  FVAVRFGNVLGSRGSVIPLFKSQIEEGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAEG  500
            FVAVRFGNVLGSRGSVIPLFK+QIE GGPVTVTHPEMTRYFMTIPEASRLVLQAGALA+G
Sbjct  441  FVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQG  500

Query  501  GEVFVLDMGEPVKIVDLARNLIKLSGKKEDDIRITYTGIRPGEKMFEELMNKDEVHPEQV  560
            GEVFVLDMG PVKIVDLA+NLI+LSGKKE+DI I ++GIRPGEK++EEL+NK+E+HP+QV
Sbjct  501  GEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQV  560

Query  561  FEKIYRGKVQHMKCNEVEAIIQDIVNDFSKEKIINYAN  598
            +EKIYRGKV+H    EV+ I++D++N+FSKEK+++ AN
Sbjct  561  YEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLKIAN  598

17) MS7_0146 in NC_017351


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  658 bits (2486),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 420/578 (73%), Positives = 539/578 (94%), Gaps = 0/578 (0%)

Query  21   VTFSVFVSYYILEPYFKTYSVKllilaaislfisHHISAFIFNMYHRAWEYASVSELILI  80
            VTFSVF++Y ILEPYFK YS+ LL+L+++ L++SHHI A++FN+YHRAWEYASVSEL+ +
Sbjct  21   VTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEYASVSELMSV  80

Query  81   VKAvttsivitmvvvtivtGNRPFFRLYLITWMMHLILIGGSRLFWRIYRKYLGGKSFNK  140
            +KAVT+SIV+T+++V+++ ++ PF+RLY+ITWMMHL+LIGGSRLFWR+YR+Y+ +++ +K
Sbjct  81   LKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEK  140

Query  141  KPTLVVGAGQAGSMLIRQMLKSDEMKLEPVLAVDDDEHKRNITITEGVKVQGKIADIPEL  200
            K+TLVVGAGQ+GS+LIR+ML+S++M+++PVLAVDDD +K+++TITE VKVQG + DIPEL
Sbjct  141  KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPEL  200

Query  201  VRkykikkiiiaiptiGQERLKEINNICHMDGVELLKMPNIEDVMSGELEVNQLKKVEVE  260
            V+K++IKKIIIAIPT++Q RL+EIN+IC+++GVEL+KMPNIEDV+SGELEVN+LKKVEVE
Sbjct  201  VKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVE  260

Query  261  DLLGRDPVELDMDMISNELTNKTILVTGAGGSIGSEICRQVCNFYPERIILLGHGENSIY  320
            DLLGRDPVELDM +IS ELTNKTILVTGAGGSIGSEICRQV +F P++IILLGHGENSIY
Sbjct  261  DLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIY  320

Query  321  LINRELRNRFGKNVDIVPIIADVQNRARMFEIMEMykpyavyhaaahkhvpLMEDNPEEA  380
             I++EL + +G+ +++VP+IADVQN++R++E+M+ +KPYAVYHAAAHKHVPLME NP+EA
Sbjct  321  SIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEA  380

Query  381  VRNNILGTKNTAEAAKNAEVKKFVMISTDKAVNPPNVMGASKRIAEMIIQSLNDETHRTN  440
            +RNNILGTKN AE+AK++EV KFVMISTDKAVNP+NVMGA+KRIAEM+IQSLN++  +T+
Sbjct  381  IRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTS  440

Query  441  FVAVRFGNVLGSRGSVIPLFKSQIEEGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAEG  500
            FVAVRFGNVLGSRGSVIPLFK+QIE GGPVTVTHPEMTRYFMTIPEASRLVLQAGALA+G
Sbjct  441  FVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQG  500

Query  501  GEVFVLDMGEPVKIVDLARNLIKLSGKKEDDIRITYTGIRPGEKMFEELMNKDEVHPEQV  560
            GEVFVLDMG PVKIVDLA+NLI+LSGKKE+DI I ++GIRPGEK++EEL+NK+E+HP+QV
Sbjct  501  GEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQV  560

Query  561  FEKIYRGKVQHMKCNEVEAIIQDIVNDFSKEKIINYAN  598
            +EKIYRGKV+H    EV+ I++D++N+FSKEK+++ AN
Sbjct  561  YEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLKIAN  598

18) capD in NC_022222


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  658 bits (2486),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 421/578 (73%), Positives = 539/578 (94%), Gaps = 0/578 (0%)

Query  25   VTFSVFVSYYILEPYFKTYSVKllilaaislfisHHISAFIFNMYHRAWEYASVSELILI  84
            VTFSVF++Y ILEPYFK YS+ LL+L+++ L++SHHI A++FN+YHRAWEYASVSEL+ +
Sbjct  21   VTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEYASVSELMSV  80

Query  85   VKAvttsivitmvvvtivtGNRPFFRLYLITWMMHLILIGGSRLFWRIYRKYLGGKSFNK  144
            +KAVT+SIV+T+++V+++ ++ PF+RLY+ITWMMHL+LIGGSRLFWR+YR+Y+ +++ +K
Sbjct  81   LKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEK  140

Query  145  KPTLVVGAGQAGSMLIRQMLKSDEMKLEPVLAVDDDEHKRNITITEGVKVQGKIADIPEL  204
            K+TLVVGAGQ+GS+LIR+ML+S++M+++PVLAVDDD +K+++TITE VKVQG + DIPEL
Sbjct  141  KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPEL  200

Query  205  VRkykikkiiiaiptiGQERLKEINNICHMDGVELLKMPNIEDVMSGELEVNQLKKVEVE  264
            V+K++IKKIIIAIPT++Q RL+EIN+IC+++GVEL+KMPNIEDV+SGELEVN+LKKVEVE
Sbjct  201  VKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVE  260

Query  265  DLLGRDPVELDMDMISNELTNKTILVTGAGGSIGSEICRQVCNFYPERIILLGHGENSIY  324
            DLLGRDPVELDM +IS ELTNKTILVTGAGGSIGSEICRQV +F P++IILLGHGENSIY
Sbjct  261  DLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIY  320

Query  325  LINRELRNRFGKNIDIVPIIADVQNRARMFEIMEMykpyavyhaaahkhvpLMEDNPEEA  384
             I++EL + +G+ I++VP+IADVQN++R++E+M+ +KPYAVYHAAAHKHVPLME NP+EA
Sbjct  321  SIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEA  380

Query  385  VRNNILGTKNTAEAAKNAEVKKFVMISTDKAVNPPNVMGASKRIAEMIIQSLNDETHRTN  444
            +RNNILGTKN AE+AK++EV KFVMISTDKAVNP+NVMGA+KRIAEM+IQSLN++  +T+
Sbjct  381  IRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTS  440

Query  445  FVAVRFGNVLGSRGSVIPLFKSQIEEGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAEG  504
            FVAVRFGNVLGSRGSVIPLFK+QIE GGPVTVTHPEMTRYFMTIPEASRLVLQAGALA+G
Sbjct  441  FVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQG  500

Query  505  GEVFVLDMGEPVKIVDLARNLIKLSGKKEDDIRITYTGIRPGEKMFEELMNKDEVHPEQV  564
            GEVFVLDMG PVKIVDLA+NLI+LSGKKE+DI I ++GIRPGEK++EEL+NK+E+HP+QV
Sbjct  501  GEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQV  560

Query  565  FEKIYRGKVQHMKCNEVEAIIQDIVNDFSKEKIINYAN  602
            +EKIYRGKV+H    EV+ I++D++N+FSKEK+++ AN
Sbjct  561  YEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLKIAN  598

19) CA347_163 in NC_021554


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  658 bits (2489),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 421/578 (73%), Positives = 540/578 (94%), Gaps = 0/578 (0%)

Query  21   VTFSVFVSYYILEPYFKTYSVKllilaaislfisHHISAFIFNMYHRAWEYASVSELILI  80
            VTFSVF++Y ILEPYFK YS+ LL+L+++ L++SHHI A++FN+YHRAWEYASVSEL+ +
Sbjct  21   VTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEYASVSELMSV  80

Query  81   VKAvttsivitmvvvtivtGNRPFFRLYLITWMMHLILIGGSRLFWRIYRKYLGGKSFNK  140
            +KAVT+SIV+T+++V+++ ++ PF+RLY+ITWMMHL+LIGGSRLFWR+YR+Y+ +++ +K
Sbjct  81   LKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEK  140

Query  141  KPTLVVGAGQAGSMLIRQMLKSDEMKLEPVLAVDDDEHKRNITITEGVKVQGKIADIPEL  200
            K+TLVVGAGQ+GS+LIR+ML+S++M+++PVLAVDDD +K+++TITE VKVQG + DIPEL
Sbjct  141  KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPEL  200

Query  201  VRkykikkiiiaiptiGQERLKEINNICHMDGVELLKMPNIEDVMSGELEVNQLKKVEVE  260
            V+K++IKKIIIAIPT++Q RL+EIN+IC+++GVEL+KMPNIEDV+SGELEVN+LKKVEVE
Sbjct  201  VKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVE  260

Query  261  DLLGRDPVELDMDMISNELTNKTILVTGAGGSIGSEICRQVCNFYPERIILLGHGENSIY  320
            DLLGRDPVELDM +IS ELTNKTILVTGAGGSIGSEICRQV +F P++IILLGHGENSIY
Sbjct  261  DLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIY  320

Query  321  LINRELRNRFGKNVDIVPIIADVQNRARMFEIMEMykpyavyhaaahkhvpLMEDNPEEA  380
             I++EL + +G+ +++VP+IADVQN++R++E+M+ +KPYAVYHAAAHKHVPLME NP+EA
Sbjct  321  SIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEA  380

Query  381  VRNNILGTKNTAEAAKNAEVKKFVMISTDKAVNPPNVMGASKRIAEMIIQSLNDETHRTN  440
            +RNNILGTKN AE+AK++EV KFVMISTDKAVNP+NVMGA+KRIAEM+IQSLN++  +T+
Sbjct  381  IRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTS  440

Query  441  FVAVRFGNVLGSRGSVIPLFKSQIEAGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAEG  500
            FVAVRFGNVLGSRGSVIPLFK+QIE+GGPVTVTHPEMTRYFMTIPEASRLVLQAGALA+G
Sbjct  441  FVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQG  500

Query  501  GEVFVLDMGEPVKIVDLARNLIKLSGKKEDDIRITYTGIRPGEKMFEELMNKDEIHPEQV  560
            GEVFVLDMG PVKIVDLA+NLI+LSGKKE+DI I ++GIRPGEK++EEL+NK+EIHP+QV
Sbjct  501  GEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQV  560

Query  561  FEKIYRGKVQHMQCNEVNAIIQDIVNDFSKEKIINYAN  598
            +EKIYRGKV+H    EV+ I++D++N+FSKEK+++ AN
Sbjct  561  YEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLKIAN  598

20) SAOV_0099 in NC_017337


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  658 bits (2486),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 419/578 (73%), Positives = 539/578 (94%), Gaps = 0/578 (0%)

Query  21   VTFSVFVSYYILEPYFKTYSVKllilaaislfisHHISAFIFNMYHRAWEYASVSELILI  80
            VTFSVF++Y ILEPYFK YS+ LL+L+++ L++SHHI A++FN+YHRAWEYASVSEL+ +
Sbjct  21   VTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEYASVSELMSV  80

Query  81   VKAvttsivitmvvvtivtGNRPFFRLYLITWMMHLILIGGSRLFWRIYRKYLGGKSFNK  140
            +KAVT+SIV+T+++V+++ ++ PF+RLY+ITWMMHL+LIGGSRLFWR+YR+Y+ +++ +K
Sbjct  81   LKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEK  140

Query  141  KPTLVVGAGQAGSMLIRQMLKSDEMKLEPVLAVDDDEHKRNITITEGVKVQGKIADIPEL  200
            K+TLVVGAGQ+GS+LIR+ML+S++M+++PVLAVDDD +K+++TITE VKVQG + DIPEL
Sbjct  141  KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPEL  200

Query  201  VRkykikkiiiaiptiGQERLKEINNICHMDGVELLKMPNIEDVMSGELEVNQLKKVEVE  260
            V+K++IKKIIIAIPT++Q RL+EIN+IC+++GVEL+KMPNIEDV+SGELEVN+LKKVEVE
Sbjct  201  VKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVE  260

Query  261  DLLGRDPVELDMDMISNELTNKTILVTGAGGSIGSEICRQVCNFYPERIILLGHGENSIY  320
            DLLGRDPVELDM +IS ELTNKTILVTGAGGSIGSEICRQV +F P++IILLGHGENSIY
Sbjct  261  DLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIY  320

Query  321  LINRELRNRFGKNVDIVPIIADVQNRARMFEIMEMykpyavyhaaahkhvpLMEDNPEEA  380
             I++EL + +G+ +++VP+IADVQN++R++E+M+ +KPYAVYHAAAHKHVPLME NP+EA
Sbjct  321  SIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEA  380

Query  381  VRNNILGTKNTAEAAKNAEVKKFVMISTDKAVNPPNVMGASKRIAEMIIQSLNDETHRTN  440
            +RNNILGTKN AE+AK++EV KFVMISTDKAVNP+NVMGA+KRIAEM+IQSLN++  +T+
Sbjct  381  IRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTS  440

Query  441  FVAVRFGNVLGSRGSVIPLFKSQIEEGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAEG  500
            FVAVRFGNVLGSRGSVIPLFK+QIE GGPVTVTHPEMTRYFMTIPEASRLVLQAGALA+G
Sbjct  441  FVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQG  500

Query  501  GEVFVLDMGEPVKIVDLARNLIKLSGKKEDEIRITYTGIRPGEKMFEELMNKDEVHPEQV  560
            GEVFVLDMG PVKIVDLA+NLI+LSGKKE++I I ++GIRPGEK++EEL+NK+E+HP+QV
Sbjct  501  GEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQV  560

Query  561  FEKIYRGKVQHMKCNEVEAIIQDIVNDFSKEKIINYAN  598
            +EKIYRGKV+H    EV+ I++D++N+FSKEK+++ AN
Sbjct  561  YEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLKIAN  598

21) cap5D in NC_017338


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  658 bits (2486),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 420/578 (73%), Positives = 539/578 (94%), Gaps = 0/578 (0%)

Query  21   VTFSVFVSYYILEPYFKTYSVKllilaaislfisHHISAFIFNMYHRAWEYASVSELILI  80
            VTFSVF++Y ILEPYFK YS+ LL+L+++ L++SHHI A++FN+YHRAWEYASVSEL+ +
Sbjct  21   VTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEYASVSELMSV  80

Query  81   VKAvttsivitmvvvtivtGNRPFFRLYLITWMMHLILIGGSRLFWRIYRKYLGGKSFNK  140
            +KAVT+SIV+T+++V+++ ++ PF+RLY+ITWMMHL+LIGGSRLFWR+YR+Y+ +++ +K
Sbjct  81   LKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEK  140

Query  141  KPTLVVGAGQAGSMLIRQMLKSDEMKLEPVLAVDDDEHKRNITITEGVKVQGKIADIPEL  200
            K+TLVVGAGQ+GS+LIR+ML+S++M+++PVLAVDDD +K+++TITE VKVQG + DIPEL
Sbjct  141  KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPEL  200

Query  201  VRkykikkiiiaiptiGQERLKEINNICHMDGVELLKMPNIEDVMSGELEVNQLKKVEVE  260
            V+K++IKKIIIAIPT++Q RL+EIN+IC+++GVEL+KMPNIEDV+SGELEVN+LKKVEVE
Sbjct  201  VKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVE  260

Query  261  DLLGRDPVELDMDMISNELTNKTILVTGAGGSIGSEICRQVCNFYPERIILLGHGENSIY  320
            DLLGRDPVELDM +IS ELTNKTILVTGAGGSIGSEICRQV +F P++IILLGHGENSIY
Sbjct  261  DLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIY  320

Query  321  LINRELRNRFGKNVDIVPIIADVQNRARMFEIMEMykpyavyhaaahkhvpLMEDNPEEA  380
             I++EL + +G+ +++VP+IADVQN++R++E+M+ +KPYAVYHAAAHKHVPLME NP+EA
Sbjct  321  SIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEA  380

Query  381  VRNNILGTKNTAEAAKNAEVKKFVMISTDKAVNPPNVMGASKRIAEMIIQSLNDETHRTN  440
            +RNNILGTKN AE+AK++EV KFVMISTDKAVNP+NVMGA+KRIAEM+IQSLN++  +T+
Sbjct  381  IRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTS  440

Query  441  FVAVRFGNVLGSRGSVIPLFKSQIEEGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAEG  500
            FVAVRFGNVLGSRGSVIPLFK+QIE GGPVTVTHPEMTRYFMTIPEASRLVLQAGALA+G
Sbjct  441  FVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQG  500

Query  501  GEVFVLDMGEPVKIVDLARNLIKLSGKKEDDIRITYTGIRPGEKMFEELMNKDEVHPEQV  560
            GEVFVLDMG PVKIVDLA+NLI+LSGKKE+DI I ++GIRPGEK++EEL+NK+E+HP+QV
Sbjct  501  GEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQV  560

Query  561  FEKIYRGKVQHMKCNEVEAIIQDIVNDFSKEKIINYAN  598
            +EKIYRGKV+H    EV+ I++D++N+FSKEK+++ AN
Sbjct  561  YEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLKIAN  598

22) M013TW_0142 in NC_016928


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  658 bits (2487),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 421/578 (73%), Positives = 539/578 (94%), Gaps = 0/578 (0%)

Query  21   VTFSVFVSYYILEPYFKTYSVKllilaaislfisHHISAFIFNMYHRAWEYASVSELILI  80
            VTFSVF++Y ILEPYFK YS+ LL+L+++ L++SHHI A++FN+YHRAWEYASVSEL+ +
Sbjct  21   VTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEYASVSELMSV  80

Query  81   VKAvttsivitmvvvtivtGNRPFFRLYLITWMMHLILIGGSRLFWRIYRKYLGGKSFNK  140
            +KAVT+SIV+T+++V+++ ++ PF+RLY+ITWMMHL+LIGGSRLFWR+YR+Y+ +++ +K
Sbjct  81   LKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEK  140

Query  141  KPTLVVGAGQAGSMLIRQMLKSDEMKLEPVLAVDDDEHKRNITITEGVKVQGKIADIPEL  200
            K+TLVVGAGQ+GS+LIR+ML+S++M+++PVLAVDDD +K+++TITE VKVQG + DIPEL
Sbjct  141  KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPEL  200

Query  201  VRkykikkiiiaiptiGQERLKEINNICHMDGVELLKMPNIEDVMSGELEVNQLKKVEVE  260
            V+K++IKKIIIAIPT++Q RL+EIN+IC+++GVEL+KMPNIEDV+SGELEVN+LKKVEVE
Sbjct  201  VKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVE  260

Query  261  DLLGRDPVELDMDMISNELTNKTILVTGAGGSIGSEICRQVCNFYPERIILLGHGENSIY  320
            DLLGRDPVELDM +IS ELTNKTILVTGAGGSIGSEICRQV +F P++IILLGHGENSIY
Sbjct  261  DLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIY  320

Query  321  LINRELRNRFGKNIDIVPIIADVQNRARMFEIMEMykpyavyhaaahkhvpLMEDNPEEA  380
             I++EL + +G+ I++VP+IADVQN++R++E+M+ +KPYAVYHAAAHKHVPLME NP+EA
Sbjct  321  SIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEA  380

Query  381  VRNNILGTKNTAEAAKNAEVKKFVMISTDKAVNPPNVMGASKRIAEMIIQSLNDETHRTN  440
            +RNNILGTKN AE+AK++EV KFVMISTDKAVNP+NVMGA+KRIAEM+IQSLN++  +T+
Sbjct  381  IRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTS  440

Query  441  FVAVRFGNVLGSRGSVIPLFKSQIEEGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAEG  500
            FVAVRFGNVLGSRGSVIPLFK+QIE GGPVTVTHPEMTRYFMTIPEASRLVLQAGALA+G
Sbjct  441  FVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQG  500

Query  501  GEVFVLDMGEPVKIVDLARNLIKLSGKKEDDIRITYTGIRPGEKMFEELMNKDEVHPEQV  560
            GEVFVLDMG PVKIVDLA+NLI+LSGKKE+DI I ++GIRPGEK++EEL+NK+E+HP+QV
Sbjct  501  GEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQV  560

Query  561  FEKIYRGKVQHMKCNEVEAIIQDIVNDFSKEKIINYAN  598
            +EKIYRGKV+H    EV+ I++D++N+FSKEK+++ AN
Sbjct  561  YEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLKIAN  598

23) capD in NC_009641


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  658 bits (2487),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 420/578 (73%), Positives = 539/578 (94%), Gaps = 0/578 (0%)

Query  25   VTFSVFVSYYILEPYFKTYSVKllilaaislfisHHISAFIFNMYHRAWEYASVSELILI  84
            VTFSVF++Y ILEPYFK YS+ LL+L+++ L++SHHI A++FN+YHRAWEYASVSEL+ +
Sbjct  21   VTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEYASVSELMSV  80

Query  85   VKAvttsivitmvvvtivtGNRPFFRLYLITWMMHLILIGGSRLFWRIYRKYLGGKSFNK  144
            +KAVT+SIV+T+++V+++ ++ PF+RLY+ITWMMHL+LIGGSRLFWR+YR+Y+ +++ +K
Sbjct  81   LKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEK  140

Query  145  KPTLVVGAGQAGSMLIRQMLKSDEMKLEPVLAVDDDEHKRNITITEGVKVQGKIADIPEL  204
            K+TLVVGAGQ+GS+LIR+ML+S++M+++PVLAVDDD +K+++TITE VKVQG + DIPEL
Sbjct  141  KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPEL  200

Query  205  VRkykikkiiiaiptiGQERLKEINNICHMDGVELLKMPNIEDVMSGELEVNQLKKVEVE  264
            V+K++IKKIIIAIPT++Q RL+EIN+IC+++GVEL+KMPNIEDV+SGELEVN+LKKVEVE
Sbjct  201  VKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVE  260

Query  265  DLLGRDPVELDMDMISNELTNKTILVTGAGGSIGSEICRQVCNFYPERIILLGHGENSIY  324
            DLLGRDPVELDM +IS ELTNKTILVTGAGGSIGSEICRQV +F P++IILLGHGENSIY
Sbjct  261  DLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIY  320

Query  325  LINRELRNRFGKNVDIVPIIADVQNRARMFEIMETykpyavyhaaahkhvpLMEDNPEEA  384
             I++EL + +G+ +++VP+IADVQN++R++E+M+ +KPYAVYHAAAHKHVPLME NP+EA
Sbjct  321  SIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEA  380

Query  385  VRNNILGTKNTAEAAKNAEVKKFVMISTDKAVNPPNVMGASKRIAEMIIQSLNDETHRTN  444
            +RNNILGTKN AE+AK++EV KFVMISTDKAVNP+NVMGA+KRIAEM+IQSLN++  +T+
Sbjct  381  IRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTS  440

Query  445  FVAVRFGNVLGSRGSVIPLFKSQIEEGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAEG  504
            FVAVRFGNVLGSRGSVIPLFK+QIE GGPVTVTHPEMTRYFMTIPEASRLVLQAGALA+G
Sbjct  441  FVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQG  500

Query  505  GEVFVLDMGEPVKIVDLARNLIKLSGKKEDDIRITYTGIRPGEKMFEELMNKDEVHPEQV  564
            GEVFVLDMG PVKIVDLA+NLI+LSGKKE+DI I ++GIRPGEK++EEL+NK+E+HP+QV
Sbjct  501  GEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQV  560

Query  565  FEKIYRGKVQHMKCNEVEAIIQDIVNDFSKEKIINYAN  602
            +EKIYRGKV+H    EV+ I++D++N+FSKEK+++ AN
Sbjct  561  YEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLKIAN  598

24) SAPIG0166 in NC_017333


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  658 bits (2486),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 420/578 (73%), Positives = 539/578 (94%), Gaps = 0/578 (0%)

Query  21   VTFSVFVSYYILEPYFKTYSVKllilaaislfisHHISAFIFNMYHRAWEYASVSELILI  80
            VTFSVF++Y ILEPYFK YS+ LL+L+++ L++SHHI A++FN+YHRAWEYASVSEL+ +
Sbjct  21   VTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEYASVSELMSV  80

Query  81   VKAvttsivitmvvvtivtGNRPFFRLYLITWMMHLILIGGSRLFWRIYRKYLGGKSFNK  140
            +KAVT+SIV+T+++V+++ ++ PF+RLY+ITWMMHL+LIGGSRLFWR+YR+Y+ +++ +K
Sbjct  81   LKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEK  140

Query  141  KPTLVVGAGQAGSMLIRQMLKSDEMKLEPVLAVDDDEHKRNITITEGVKVQGEIADIPEL  200
            K+TLVVGAGQ+GS+LIR+ML+S++M+++PVLAVDDD +K+++TITE VKVQG + DIPEL
Sbjct  141  KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPEL  200

Query  201  VRkykikkiiiaiptiGQERLKEINNICHMDGVELLKMPNIEDVMSGELEVNQLKKVEVE  260
            V+K++IKKIIIAIPT++Q RL+EIN+IC+++GVEL+KMPNIEDV+SGELEVN+LKKVEVE
Sbjct  201  VKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVE  260

Query  261  DLLGRDPVELDMDMISNELTNKTILVTGAGGSIGSEICRQVCNFYPERIILLGHGENSIY  320
            DLLGRDPVELDM +IS ELTNKTILVTGAGGSIGSEICRQV +F P++IILLGHGENSIY
Sbjct  261  DLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIY  320

Query  321  LINRELRNRFGKNVDIVPIIADVQNRARMFEIMEMykpyavyhaaahkhvpLMEDNPEEA  380
             I++EL + +G+ +++VP+IADVQN++R++E+M+ +KPYAVYHAAAHKHVPLME NP+EA
Sbjct  321  SIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEA  380

Query  381  VRNNILGTKNTAEAAKNAEVKKFVMISTDKAVNPPNVMGASKRIAEMIIQSLNDETHRTN  440
            +RNNILGTKN AE+AK++EV KFVMISTDKAVNP+NVMGA+KRIAEM+IQSLN++  +T+
Sbjct  381  IRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTS  440

Query  441  FVAVRFGNVLGSRGSVIPLFKSQIEEGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAEG  500
            FVAVRFGNVLGSRGSVIPLFK+QIE GGPVTVTHPEMTRYFMTIPEASRLVLQAGALA+G
Sbjct  441  FVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQG  500

Query  501  GEVFVLDMGEPVKIVDLARNLIKLSGKKEDDIRITYTGIRPGEKMFEELMNKDEVHPEQV  560
            GEVFVLDMG PVKIVDLA+NLI+LSGKKE+DI I ++GIRPGEK++EEL+NK+E+HP+QV
Sbjct  501  GEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQV  560

Query  561  FEKIYRGKVQHMKCNEVEAIIQDIVNDFSKEKIINYAN  598
            +EKIYRGKV+H    EV+ I++D++N+FSKEK+++ AN
Sbjct  561  YEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLKIAN  598

25) capD in NC_017340


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  657 bits (2484),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 419/578 (73%), Positives = 539/578 (94%), Gaps = 0/578 (0%)

Query  21   VTFSVFVSYYILEPYFKTYSVKllilaaislfisHHISAFIFNMYHRAWEYASVSELILI  80
            VTFSVF++Y ILEPYFK YS+ LL+L+++ L++SHHI A++FN+YHRAWEYASVSEL+ +
Sbjct  21   VTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEYASVSELMSV  80

Query  81   VKAvttsivitmvvvtivtGNRPFFRLYLITWMMHLILIGGSRLFWRIYRKYLGGKSFNK  140
            +KAVT+SIV+T+++V+++ ++ PF+RLY+ITWMMHL+LIGGSRLFWR+YR+Y+ +++ +K
Sbjct  81   LKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEK  140

Query  141  KPTLVVGAGQAGSMLIRQMLKSDEMKLEPVLAVDDDEHKRNITITEGVKVQGKIADIPEL  200
            K+TLVVGAGQ+GS+LIR+ML+S++M+++PVLAVDDD +K+++TITE VKVQG + DIPEL
Sbjct  141  KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPEL  200

Query  201  VRkykikkiiiaiptiGQERLKEINNICHMDGVELLKMPNIEDVMSGELEVNQLKKVEVE  260
            V+K++IKKIIIAIPT++Q RL+EIN+IC+++GVEL+KMPNIEDV+SGELEVN+LKKVEVE
Sbjct  201  VKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVE  260

Query  261  DLLGRDPVELDMDMISNELTNKTILVTGAGGSIGSEICRQVCNFYPERIILLGHGENSIY  320
            DLLGRDPVELDM +IS ELTNKTILVTGAGGSIGSEICRQV +F P++IILLGHGENSIY
Sbjct  261  DLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIY  320

Query  321  LINRELRNRFGKNVDIVPIIADVQNRARMFEIMETykpyavyhaaahkhvpLMEDNPEEA  380
             I++EL + +G+ +++VP+IADVQN++R++E+M+ +KPYAVYHAAAHKHVPLME NP+EA
Sbjct  321  SIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEA  380

Query  381  VHNNILGTKNTAEAAKNAEVKKFVMISTDKAVNPPNVMGASKRIAEMIIQSLNDETHRTN  440
            ++NNILGTKN AE+AK++EV KFVMISTDKAVNP+NVMGA+KRIAEM+IQSLN++  +T+
Sbjct  381  IRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTS  440

Query  441  FVAVRFGNVLGSRGSVIPLFKSQIEEGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAEG  500
            FVAVRFGNVLGSRGSVIPLFK+QIE GGPVTVTHPEMTRYFMTIPEASRLVLQAGALA+G
Sbjct  441  FVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQG  500

Query  501  GEVFVLDMGEPVKIVDLARNLIKLSGKKEDDIRITYTGIRPGEKMFEELMNKDEVHPEQV  560
            GEVFVLDMG PVKIVDLA+NLI+LSGKKE+DI I ++GIRPGEK++EEL+NK+E+HP+QV
Sbjct  501  GEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQV  560

Query  561  FEKIYRGKVQHMKCNEVEAIIQDIVNDFSKEKIINYAN  598
            +EKIYRGKV+H    EV+ I++D++N+FSKEK+++ AN
Sbjct  561  YEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLKIAN  598

26) capD in NC_018608


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  657 bits (2483),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 420/578 (73%), Positives = 539/578 (94%), Gaps = 0/578 (0%)

Query  25   VTFSVFVSYYILEPYFKTYSVKllilaaislfisHHISAFIFNMYHRAWEYASVSELILI  84
            VTFSVF++Y ILEPYFK YS+ LL+L+++ L++SHHI A++FN+YHRAWEYASVSEL+ +
Sbjct  21   VTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEYASVSELMSV  80

Query  85   VKAvttsivitmvvvtivtGNRPFFRLYLITWMMHLILIGGSRLFWRIYRKYLGGKSFNK  144
            +KAVT+SIV+T+++V+++ ++ PF+RLY+ITWMMHL+LIGGSRLFWR+YR+Y+ +++ +K
Sbjct  81   LKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEK  140

Query  145  KPTLVVGAGQAGSMLIRQMLKSDEMKLEPVLAVDDDEHKRNITITEGVKVQGEIADIPEL  204
            K+TLVVGAGQ+GS+LIR+ML+S++M+++PVLAVDDD +K+++TITE VKVQG + DIPEL
Sbjct  141  KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPEL  200

Query  205  VRkykikkiiiaiptiGQERLKEINNICHMDGVELLKMPNIEDVMSGELEVNQLKKVEVE  264
            V+K++IKKIIIAIPT++Q RL+EIN+IC+++GVEL+KMPNIEDV+SGELEVN+LKKVEVE
Sbjct  201  VKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVE  260

Query  265  DLLGRDPVELDMDMISNELTNKTILVTGAGGSIGSEICRQVCNFYPERIILLGHGENSIY  324
            DLLGRDPVELDM +IS ELTNKTILVTGAGGSIGSEICRQV +F P++IILLGHGENSIY
Sbjct  261  DLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIY  320

Query  325  LINRELRNRFGKNVDIVPIIADVQNRARMFEIMEMykpyavyhaaahkhvpLMEDNPEEA  384
             I++EL + +G+ +++VP+IADVQN++R++E+M+ +KPYAVYHAAAHKHVPLME NP+EA
Sbjct  321  SIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEA  380

Query  385  VRNNILGTKNTAEAAKNAEVKKFVMISTDKAVNPPNVMGASKRIAEMIIQSLNDETHRTN  444
            +RNNILGTKN AE+AK++EV KFVMISTDKAVNP+NVMGA+KRIAEM+IQSLN++  +T+
Sbjct  381  IRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTS  440

Query  445  FVAVRFGNVLGSRGSVIPLFKSQIEEGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAEG  504
            FVAVRFGNVLGSRGSVIPLFK+QIE GGPVTVTHPEMTRYFMTIPEASRLVLQAGALA+G
Sbjct  441  FVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQG  500

Query  505  GEVFVLDMGEPVKIVDLARNLIKLSGKKEDDIRITYTGIRPGEKMFEELMNKDEVHPEQV  564
            GEVFVLDMG PVKIVDLA+NLI+LSGKKE+DI I ++GIRPGEK++EEL+NK+E+HP+QV
Sbjct  501  GEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQV  560

Query  565  FEKIYRGKVQHMKCNEVEAIIQDIVNDFSKEKIINYAN  602
            +EKIYRGKV+H    EV+ I++D++N+FSKEK+++ AN
Sbjct  561  YEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLKIAN  598

27) ST398NM01_0166 in NC_017673


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  657 bits (2482),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 420/578 (73%), Positives = 539/578 (94%), Gaps = 0/578 (0%)

Query  52   VTFSVFVSYYILEPYFKTYSVKllilaaislfisHHISAFIFNMYHRAWEYASVSELILI  111
            VTFSVF++Y ILEPYFK YS+ LL+L+++ L++SHHI A++FN+YHRAWEYASVSEL+ +
Sbjct  21   VTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEYASVSELMSV  80

Query  112  VKAvttsivitmvvvtivtGNRPFFRLYLITWMMHLILIGGSRLFWRIYRKYLGGKSFNK  171
            +KAVT+SIV+T+++V+++ ++ PF+RLY+ITWMMHL+LIGGSRLFWR+YR+Y+ +++ +K
Sbjct  81   LKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEK  140

Query  172  KPTLVVGAGQAGSMLIRQMLKSDEMKLEPVLAVDDDEHKRNITITEGVKVQGEIADIPEL  231
            K+TLVVGAGQ+GS+LIR+ML+S++M+++PVLAVDDD +K+++TITE VKVQG + DIPEL
Sbjct  141  KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPEL  200

Query  232  VRkykikkiiiaiptiGQERLKEINNICHMDGVELLKMPNIEDVMSGELEVNQLKKVEVE  291
            V+K++IKKIIIAIPT++Q RL+EIN+IC+++GVEL+KMPNIEDV+SGELEVN+LKKVEVE
Sbjct  201  VKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVE  260

Query  292  DLLGRDPVELDMDMISNELTNKTILVTGAGGSIGSEICRQVCNFYPERIILLGHGENSIY  351
            DLLGRDPVELDM +IS ELTNKTILVTGAGGSIGSEICRQV +F P++IILLGHGENSIY
Sbjct  261  DLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIY  320

Query  352  LINRELRNRFGKNVDIVPIIADVQNRARMFEIMEMykpyavyhaaahkhvpLMEDNPEEA  411
             I++EL + +G+ +++VP+IADVQN++R++E+M+ +KPYAVYHAAAHKHVPLME NP+EA
Sbjct  321  SIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEA  380

Query  412  VRNNILGTKNTAEAAKNAEVKKFVMISTDKAVNPPNVMGASKRIAEMIIQSLNDETHRTN  471
            +RNNILGTKN AE+AK++EV KFVMISTDKAVNP+NVMGA+KRIAEM+IQSLN++  +T+
Sbjct  381  IRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTS  440

Query  472  FVAVRFGNVLGSRGSVIPLFKSQIEEGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAEG  531
            FVAVRFGNVLGSRGSVIPLFK+QIE GGPVTVTHPEMTRYFMTIPEASRLVLQAGALA+G
Sbjct  441  FVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQG  500

Query  532  GEVFVLDMGEPVKIVDLARNLIKLSGKKEDDIRITYTGIRPGEKMFEELMNKDEVHPEQV  591
            GEVFVLDMG PVKIVDLA+NLI+LSGKKE+DI I ++GIRPGEK++EEL+NK+E+HP+QV
Sbjct  501  GEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQV  560

Query  592  FEKIYRGKVQHMKCNEVEAIIQDIVNDFSKEKIINYAN  629
            +EKIYRGKV+H    EV+ I++D++N+FSKEK+++ AN
Sbjct  561  YEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLKIAN  598

28) ECTR2_109 in NC_017343


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  657 bits (2484),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 419/578 (73%), Positives = 539/578 (94%), Gaps = 0/578 (0%)

Query  21   VTFSVFVSYYILEPYFKTYSVKllilaaislfisHHISAFIFNMYHRAWEYASVSELILI  80
            VTFSVF++Y ILEPYFK YS+ LL+L+++ L++SHHI A++FN+YHRAWEYASVSEL+ +
Sbjct  21   VTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEYASVSELMSV  80

Query  81   VKAvttsivitmvvvtivtGNRPFFRLYLITWMMHLILIGGSRLFWRIYRKYLGGKSFNK  140
            +KAVT+SIV+T+++V+++ ++ PF+RLY+ITWMMHL+LIGGSRLFWR+YR+Y+ +++ +K
Sbjct  81   LKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEK  140

Query  141  KPTLVVGAGQAGSMLIRQMLKSDEMKLEPVLAVDDDEHKRNITITEGVKVQGKIADIPEL  200
            K+TLVVGAGQ+GS+LIR+ML+S++M+++PVLAVDDD +K+++TITE VKVQG + DIPEL
Sbjct  141  KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPEL  200

Query  201  VRkykikkiiiaiptiGQERLKEINNICHMDGVELLKMPNIEDVMSGELEVNQLKKVEVE  260
            V+K++IKKIIIAIPT++Q RL+EIN+IC+++GVEL+KMPNIEDV+SGELEVN+LKKVEVE
Sbjct  201  VKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVE  260

Query  261  DLLGRDPVELDMDMISNELTNKTILVTGAGGSIGSEICRQVCNFYPERIILLGHGENSIY  320
            DLLGRDPVELDM +IS ELTNKTILVTGAGGSIGSEICRQV +F P++IILLGHGENSIY
Sbjct  261  DLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIY  320

Query  321  LINRELRNRFGKNVDIVPIIADVQNRARMFEIMETykpyavyhaaahkhvpLMEDNPEEA  380
             I++EL + +G+ +++VP+IADVQN++R++E+M+ +KPYAVYHAAAHKHVPLME NP+EA
Sbjct  321  SIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEA  380

Query  381  VHNNILGTKNTAEAAKNAEVKKFVMISTDKAVNPPNVMGASKRIAEMIIQSLNDETHRTN  440
            ++NNILGTKN AE+AK++EV KFVMISTDKAVNP+NVMGA+KRIAEM+IQSLN++  +T+
Sbjct  381  IRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTS  440

Query  441  FVAVRFGNVLGSRGSVIPLFKSQIEEGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAEG  500
            FVAVRFGNVLGSRGSVIPLFK+QIE GGPVTVTHPEMTRYFMTIPEASRLVLQAGALA+G
Sbjct  441  FVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQG  500

Query  501  GEVFVLDMGEPVKIVDLARNLIKLSGKKEDDIRITYTGIRPGEKMFEELMNKDEVHPEQV  560
            GEVFVLDMG PVKIVDLA+NLI+LSGKKE+DI I ++GIRPGEK++EEL+NK+E+HP+QV
Sbjct  501  GEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQV  560

Query  561  FEKIYRGKVQHMKCNEVEAIIQDIVNDFSKEKIINYAN  598
            +EKIYRGKV+H    EV+ I++D++N+FSKEK+++ AN
Sbjct  561  YEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLKIAN  598

29) cap5D in NC_013450


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  657 bits (2484),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 419/578 (73%), Positives = 539/578 (94%), Gaps = 0/578 (0%)

Query  21   VTFSVFVSYYILEPYFKTYSVKllilaaislfisHHISAFIFNMYHRAWEYASVSELILI  80
            VTFSVF++Y ILEPYFK YS+ LL+L+++ L++SHHI A++FN+YHRAWEYASVSEL+ +
Sbjct  21   VTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEYASVSELMSV  80

Query  81   VKAvttsivitmvvvtivtGNRPFFRLYLITWMMHLILIGGSRLFWRIYRKYLGGKSFNK  140
            +KAVT+SIV+T+++V+++ ++ PF+RLY+ITWMMHL+LIGGSRLFWR+YR+Y+ +++ +K
Sbjct  81   LKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEK  140

Query  141  KPTLVVGAGQAGSMLIRQMLKSDEMKLEPVLAVDDDEHKRNITITEGVKVQGKIADIPEL  200
            K+TLVVGAGQ+GS+LIR+ML+S++M+++PVLAVDDD +K+++TITE VKVQG + DIPEL
Sbjct  141  KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPEL  200

Query  201  VRkykikkiiiaiptiGQERLKEINNICHMDGVELLKMPNIEDVMSGELEVNQLKKVEVE  260
            V+K++IKKIIIAIPT++Q RL+EIN+IC+++GVEL+KMPNIEDV+SGELEVN+LKKVEVE
Sbjct  201  VKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVE  260

Query  261  DLLGRDPVELDMDMISNELTNKTILVTGAGGSIGSEICRQVCNFYPERIILLGHGENSIY  320
            DLLGRDPVELDM +IS ELTNKTILVTGAGGSIGSEICRQV +F P++IILLGHGENSIY
Sbjct  261  DLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIY  320

Query  321  LINRELRNRFGKNVDIVPIIADVQNRARMFEIMETykpyavyhaaahkhvpLMEDNPEEA  380
             I++EL + +G+ +++VP+IADVQN++R++E+M+ +KPYAVYHAAAHKHVPLME NP+EA
Sbjct  321  SIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEA  380

Query  381  VHNNILGTKNTAEAAKNAEVKKFVMISTDKAVNPPNVMGASKRIAEMIIQSLNDETHRTN  440
            ++NNILGTKN AE+AK++EV KFVMISTDKAVNP+NVMGA+KRIAEM+IQSLN++  +T+
Sbjct  381  IRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTS  440

Query  441  FVAVRFGNVLGSRGSVIPLFKSQIEEGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAEG  500
            FVAVRFGNVLGSRGSVIPLFK+QIE GGPVTVTHPEMTRYFMTIPEASRLVLQAGALA+G
Sbjct  441  FVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQG  500

Query  501  GEVFVLDMGEPVKIVDLARNLIKLSGKKEDDIRITYTGIRPGEKMFEELMNKDEVHPEQV  560
            GEVFVLDMG PVKIVDLA+NLI+LSGKKE+DI I ++GIRPGEK++EEL+NK+E+HP+QV
Sbjct  501  GEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQV  560

Query  561  FEKIYRGKVQHMKCNEVEAIIQDIVNDFSKEKIINYAN  598
            +EKIYRGKV+H    EV+ I++D++N+FSKEK+++ AN
Sbjct  561  YEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLKIAN  598

30) SaurJH1_0143 in NC_009632


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  657 bits (2482),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 419/578 (73%), Positives = 539/578 (94%), Gaps = 0/578 (0%)

Query  25   VTFSVFVSYYILEPYFKTYSVKllilaaislfisHHISAFIFNMYHRAWEYASVSELILI  84
            VTFSVF++Y ILEPYFK YS+ LL+L+++ L++SHHI A++FN+YHRAWEYASVSEL+ +
Sbjct  21   VTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEYASVSELMSV  80

Query  85   VKAvttsivitmvvvtivtGNRPFFRLYLITWMMHLILIGGSRLFWRIYRKYLGGKSFNK  144
            +KAVT+SIV+T+++V+++ ++ PF+RLY+ITWMMHL+LIGGSRLFWR+YR+Y+ +++ +K
Sbjct  81   LKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEK  140

Query  145  KPTLVVGAGQAGSMLIRQMLKSDEMKLEPVLAVDDDEHKRNITITEGVKVQGKIADIPEL  204
            K+TLVVGAGQ+GS+LIR+ML+S++M+++PVLAVDDD +K+++TITE VKVQG + DIPEL
Sbjct  141  KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPEL  200

Query  205  VRkykikkiiiaiptiGQERLKEINNICHMDGVELLKMPNIEDVMSGELEVNQLKKVEVE  264
            V+K++IKKIIIAIPT++Q RL+EIN+IC+++GVEL+KMPNIEDV+SGELEVN+LKKVEVE
Sbjct  201  VKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVE  260

Query  265  DLLGRDPVELDMDMISNELTNKTILVTGAGGSIGSEICRQVCNFYPERIILLGHGENSIY  324
            DLLGRDPVELDM +IS ELTNKTILVTGAGGSIGSEICRQV +F P++IILLGHGENSIY
Sbjct  261  DLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIY  320

Query  325  LINRELRNRFGKNVDIVPIIADVQNRARMFEIMETykpyavyhaaahkhvpLMEDNPEEA  384
             I++EL + +G+ +++VP+IADVQN++R++E+M+ +KPYAVYHAAAHKHVPLME NP+EA
Sbjct  321  SIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEA  380

Query  385  VHNNILGTKNTAEAAKNAEVKKFVMISTDKAVNPPNVMGASKRIAEMIIQSLNDETHRTN  444
            ++NNILGTKN AE+AK++EV KFVMISTDKAVNP+NVMGA+KRIAEM+IQSLN++  +T+
Sbjct  381  IRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTS  440

Query  445  FVAVRFGNVLGSRGSVIPLFKSQIEEGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAEG  504
            FVAVRFGNVLGSRGSVIPLFK+QIE GGPVTVTHPEMTRYFMTIPEASRLVLQAGALA+G
Sbjct  441  FVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQG  500

Query  505  GEVFVLDMGEPVKIVDLARNLIKLSGKKEDDIRITYTGIRPGEKMFEELMNKDEVHPEQV  564
            GEVFVLDMG PVKIVDLA+NLI+LSGKKE+DI I ++GIRPGEK++EEL+NK+E+HP+QV
Sbjct  501  GEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQV  560

Query  565  FEKIYRGKVQHMKCNEVEAIIQDIVNDFSKEKIINYAN  602
            +EKIYRGKV+H    EV+ I++D++N+FSKEK+++ AN
Sbjct  561  YEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLKIAN  598

31) SaurJH9_0138 in NC_009487


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  657 bits (2484),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 419/578 (73%), Positives = 539/578 (94%), Gaps = 0/578 (0%)

Query  21   VTFSVFVSYYILEPYFKTYSVKllilaaislfisHHISAFIFNMYHRAWEYASVSELILI  80
            VTFSVF++Y ILEPYFK YS+ LL+L+++ L++SHHI A++FN+YHRAWEYASVSEL+ +
Sbjct  21   VTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEYASVSELMSV  80

Query  81   VKAvttsivitmvvvtivtGNRPFFRLYLITWMMHLILIGGSRLFWRIYRKYLGGKSFNK  140
            +KAVT+SIV+T+++V+++ ++ PF+RLY+ITWMMHL+LIGGSRLFWR+YR+Y+ +++ +K
Sbjct  81   LKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEK  140

Query  141  KPTLVVGAGQAGSMLIRQMLKSDEMKLEPVLAVDDDEHKRNITITEGVKVQGKIADIPEL  200
            K+TLVVGAGQ+GS+LIR+ML+S++M+++PVLAVDDD +K+++TITE VKVQG + DIPEL
Sbjct  141  KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPEL  200

Query  201  VRkykikkiiiaiptiGQERLKEINNICHMDGVELLKMPNIEDVMSGELEVNQLKKVEVE  260
            V+K++IKKIIIAIPT++Q RL+EIN+IC+++GVEL+KMPNIEDV+SGELEVN+LKKVEVE
Sbjct  201  VKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVE  260

Query  261  DLLGRDPVELDMDMISNELTNKTILVTGAGGSIGSEICRQVCNFYPERIILLGHGENSIY  320
            DLLGRDPVELDM +IS ELTNKTILVTGAGGSIGSEICRQV +F P++IILLGHGENSIY
Sbjct  261  DLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIY  320

Query  321  LINRELRNRFGKNVDIVPIIADVQNRARMFEIMETykpyavyhaaahkhvpLMEDNPEEA  380
             I++EL + +G+ +++VP+IADVQN++R++E+M+ +KPYAVYHAAAHKHVPLME NP+EA
Sbjct  321  SIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEA  380

Query  381  VHNNILGTKNTAEAAKNAEVKKFVMISTDKAVNPPNVMGASKRIAEMIIQSLNDETHRTN  440
            ++NNILGTKN AE+AK++EV KFVMISTDKAVNP+NVMGA+KRIAEM+IQSLN++  +T+
Sbjct  381  IRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTS  440

Query  441  FVAVRFGNVLGSRGSVIPLFKSQIEEGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAEG  500
            FVAVRFGNVLGSRGSVIPLFK+QIE GGPVTVTHPEMTRYFMTIPEASRLVLQAGALA+G
Sbjct  441  FVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQG  500

Query  501  GEVFVLDMGEPVKIVDLARNLIKLSGKKEDDIRITYTGIRPGEKMFEELMNKDEVHPEQV  560
            GEVFVLDMG PVKIVDLA+NLI+LSGKKE+DI I ++GIRPGEK++EEL+NK+E+HP+QV
Sbjct  501  GEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQV  560

Query  561  FEKIYRGKVQHMKCNEVEAIIQDIVNDFSKEKIINYAN  598
            +EKIYRGKV+H    EV+ I++D++N+FSKEK+++ AN
Sbjct  561  YEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLKIAN  598

32) capD in NC_017349


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  657 bits (2484),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 418/578 (73%), Positives = 539/578 (94%), Gaps = 0/578 (0%)

Query  21   VTFSVFVSYYILEPYFKTYSVKllilaaislfisHHISAFIFNMYHRAWEYASVSELILI  80
            VTFSVF++Y ILEPYFK YS+ LL+L+++ L++SHHI A++FN+YHRAWEYASVSEL+ +
Sbjct  21   VTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEYASVSELMSV  80

Query  81   VKAvttsivitmvvvtivtGNRPFFRLYLITWMMHLILIGGSRLFWRIYRKYLGGKSFNK  140
            +KAVT+SIV+T+++V+++ ++ PF+RLY+ITWMMHL+LIGGSRLFWR+YR+Y+ +++ +K
Sbjct  81   LKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEK  140

Query  141  KPTLVVGAGQAGSMLIRQMLKSDEMKLEPVLAVDDDEHKRNITITEGVKVQGKIADIPEL  200
            K+TLVVGAGQ+GS+LIR+ML+S++M+++PVLAVDDD +K+++TITE VKVQG + DIPEL
Sbjct  141  KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPEL  200

Query  201  VRkykikkiiiaiptiGQERLKEINNICHMDGVELLKMPNIEDVMSGELEVNQLKKVEVE  260
            V+K++IKKIIIAIPT++Q RL+EIN+IC+++GVEL+KMPNIEDV+SGELEVN+LKKVEVE
Sbjct  201  VKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVE  260

Query  261  DLLGKDPVELDMDMISNELTNKTILVTGAGGSIGSEICRQVCNFYPERIILLGHGENSIY  320
            DLLG+DPVELDM +IS ELTNKTILVTGAGGSIGSEICRQV +F P++IILLGHGENSIY
Sbjct  261  DLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIY  320

Query  321  LINRELRNRFGKNVDIVPIIADVQNRARMFEIMERykpyavyhaaahkhvpLMEDNPEEA  380
             I++EL + +G+ +++VP+IADVQN++R++E+M+ +KPYAVYHAAAHKHVPLME NP+EA
Sbjct  321  SIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEA  380

Query  381  VRNNILGTKNTAEAAKNAEVKKFVMISTDKAVNPPNVMGASKRIAEMIIQSLNDETHRTN  440
            +RNNILGTKN AE+AK++EV KFVMISTDKAVNP+NVMGA+KRIAEM+IQSLN++  +T+
Sbjct  381  IRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTS  440

Query  441  FVAVRFGNVLGSRGSVIPLFKSQIEEGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAEG  500
            FVAVRFGNVLGSRGSVIPLFK+QIE GGPVTVTHPEMTRYFMTIPEASRLVLQAGALA+G
Sbjct  441  FVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQG  500

Query  501  GEVFVLDMGEPVKIVDLARNLIKLSGKKEDEIRITYTGIRPGEKMFEELMNKDEVHPEQV  560
            GEVFVLDMG PVKIVDLA+NLI+LSGKKE++I I ++GIRPGEK++EEL+NK+E+HP+QV
Sbjct  501  GEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQV  560

Query  561  FEKIYRGKVQHMKCNEVEAIIQDIVNDFSKEKIINYAN  598
            +EKIYRGKV+H    EV+ I++D++N+FSKEK+++ AN
Sbjct  561  YEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLKIAN  598

33) capD in NC_009782


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  657 bits (2484),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 419/578 (73%), Positives = 539/578 (94%), Gaps = 0/578 (0%)

Query  21   VTFSVFVSYYILEPYFKTYSVKllilaaislfisHHISAFIFNMYHRAWEYASVSELILI  80
            VTFSVF++Y ILEPYFK YS+ LL+L+++ L++SHHI A++FN+YHRAWEYASVSEL+ +
Sbjct  21   VTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEYASVSELMSV  80

Query  81   VKAvttsivitmvvvtivtGNRPFFRLYLITWMMHLILIGGSRLFWRIYRKYLGGKSFNK  140
            +KAVT+SIV+T+++V+++ ++ PF+RLY+ITWMMHL+LIGGSRLFWR+YR+Y+ +++ +K
Sbjct  81   LKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEK  140

Query  141  KPTLVVGAGQAGSMLIRQMLKSDEMKLEPVLAVDDDEHKRNITITEGVKVQGKIADIPEL  200
            K+TLVVGAGQ+GS+LIR+ML+S++M+++PVLAVDDD +K+++TITE VKVQG + DIPEL
Sbjct  141  KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPEL  200

Query  201  VRkykikkiiiaiptiGQERLKEINNICHMDGVELLKMPNIEDVMSGELEVNQLKKVEVE  260
            V+K++IKKIIIAIPT++Q RL+EIN+IC+++GVEL+KMPNIEDV+SGELEVN+LKKVEVE
Sbjct  201  VKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVE  260

Query  261  DLLGRDPVELDMDMISNELTNKTILVTGAGGSIGSEICRQVCNFYPERIILLGHGENSIY  320
            DLLGRDPVELDM +IS ELTNKTILVTGAGGSIGSEICRQV +F P++IILLGHGENSIY
Sbjct  261  DLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIY  320

Query  321  LINRELRNRFGKNVDIVPIIADVQNRARMFEIMETykpyavyhaaahkhvpLMEDNPEEA  380
             I++EL + +G+ +++VP+IADVQN++R++E+M+ +KPYAVYHAAAHKHVPLME NP+EA
Sbjct  321  SIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEA  380

Query  381  VHNNILGTKNTAEAAKNAEVKKFVMISTDKAVNPPNVMGASKRIAEMIIQSLNDETHRTN  440
            ++NNILGTKN AE+AK++EV KFVMISTDKAVNP+NVMGA+KRIAEM+IQSLN++  +T+
Sbjct  381  IRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTS  440

Query  441  FVAVRFGNVLGSRGSVIPLFKSQIEEGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAEG  500
            FVAVRFGNVLGSRGSVIPLFK+QIE GGPVTVTHPEMTRYFMTIPEASRLVLQAGALA+G
Sbjct  441  FVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQG  500

Query  501  GEVFVLDMGEPVKIVDLARNLIKLSGKKEDDIRITYTGIRPGEKMFEELMNKDEVHPEQV  560
            GEVFVLDMG PVKIVDLA+NLI+LSGKKE+DI I ++GIRPGEK++EEL+NK+E+HP+QV
Sbjct  501  GEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQV  560

Query  561  FEKIYRGKVQHMKCNEVEAIIQDIVNDFSKEKIINYAN  598
            +EKIYRGKV+H    EV+ I++D++N+FSKEK+++ AN
Sbjct  561  YEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLKIAN  598

34) capD in NC_002758


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  657 bits (2484),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 419/578 (73%), Positives = 539/578 (94%), Gaps = 0/578 (0%)

Query  21   VTFSVFVSYYILEPYFKTYSVKllilaaislfisHHISAFIFNMYHRAWEYASVSELILI  80
            VTFSVF++Y ILEPYFK YS+ LL+L+++ L++SHHI A++FN+YHRAWEYASVSEL+ +
Sbjct  21   VTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEYASVSELMSV  80

Query  81   VKAvttsivitmvvvtivtGNRPFFRLYLITWMMHLILIGGSRLFWRIYRKYLGGKSFNK  140
            +KAVT+SIV+T+++V+++ ++ PF+RLY+ITWMMHL+LIGGSRLFWR+YR+Y+ +++ +K
Sbjct  81   LKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEK  140

Query  141  KPTLVVGAGQAGSMLIRQMLKSDEMKLEPVLAVDDDEHKRNITITEGVKVQGKIADIPEL  200
            K+TLVVGAGQ+GS+LIR+ML+S++M+++PVLAVDDD +K+++TITE VKVQG + DIPEL
Sbjct  141  KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPEL  200

Query  201  VRkykikkiiiaiptiGQERLKEINNICHMDGVELLKMPNIEDVMSGELEVNQLKKVEVE  260
            V+K++IKKIIIAIPT++Q RL+EIN+IC+++GVEL+KMPNIEDV+SGELEVN+LKKVEVE
Sbjct  201  VKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVE  260

Query  261  DLLGRDPVELDMDMISNELTNKTILVTGAGGSIGSEICRQVCNFYPERIILLGHGENSIY  320
            DLLGRDPVELDM +IS ELTNKTILVTGAGGSIGSEICRQV +F P++IILLGHGENSIY
Sbjct  261  DLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIY  320

Query  321  LINRELRNRFGKNVDIVPIIADVQNRARMFEIMETykpyavyhaaahkhvpLMEDNPEEA  380
             I++EL + +G+ +++VP+IADVQN++R++E+M+ +KPYAVYHAAAHKHVPLME NP+EA
Sbjct  321  SIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEA  380

Query  381  VHNNILGTKNTAEAAKNAEVKKFVMISTDKAVNPPNVMGASKRIAEMIIQSLNDETHRTN  440
            ++NNILGTKN AE+AK++EV KFVMISTDKAVNP+NVMGA+KRIAEM+IQSLN++  +T+
Sbjct  381  IRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTS  440

Query  441  FVAVRFGNVLGSRGSVIPLFKSQIEEGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAEG  500
            FVAVRFGNVLGSRGSVIPLFK+QIE GGPVTVTHPEMTRYFMTIPEASRLVLQAGALA+G
Sbjct  441  FVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQG  500

Query  501  GEVFVLDMGEPVKIVDLARNLIKLSGKKEDDIRITYTGIRPGEKMFEELMNKDEVHPEQV  560
            GEVFVLDMG PVKIVDLA+NLI+LSGKKE+DI I ++GIRPGEK++EEL+NK+E+HP+QV
Sbjct  501  GEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQV  560

Query  561  FEKIYRGKVQHMKCNEVEAIIQDIVNDFSKEKIINYAN  598
            +EKIYRGKV+H    EV+ I++D++N+FSKEK+++ AN
Sbjct  561  YEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLKIAN  598

35) capD in NC_002745


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  657 bits (2484),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 419/578 (73%), Positives = 539/578 (94%), Gaps = 0/578 (0%)

Query  21   VTFSVFVSYYILEPYFKTYSVKllilaaislfisHHISAFIFNMYHRAWEYASVSELILI  80
            VTFSVF++Y ILEPYFK YS+ LL+L+++ L++SHHI A++FN+YHRAWEYASVSEL+ +
Sbjct  21   VTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEYASVSELMSV  80

Query  81   VKAvttsivitmvvvtivtGNRPFFRLYLITWMMHLILIGGSRLFWRIYRKYLGGKSFNK  140
            +KAVT+SIV+T+++V+++ ++ PF+RLY+ITWMMHL+LIGGSRLFWR+YR+Y+ +++ +K
Sbjct  81   LKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEK  140

Query  141  KPTLVVGAGQAGSMLIRQMLKSDEMKLEPVLAVDDDEHKRNITITEGVKVQGKIADIPEL  200
            K+TLVVGAGQ+GS+LIR+ML+S++M+++PVLAVDDD +K+++TITE VKVQG + DIPEL
Sbjct  141  KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPEL  200

Query  201  VRkykikkiiiaiptiGQERLKEINNICHMDGVELLKMPNIEDVMSGELEVNQLKKVEVE  260
            V+K++IKKIIIAIPT++Q RL+EIN+IC+++GVEL+KMPNIEDV+SGELEVN+LKKVEVE
Sbjct  201  VKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVE  260

Query  261  DLLGRDPVELDMDMISNELTNKTILVTGAGGSIGSEICRQVCNFYPERIILLGHGENSIY  320
            DLLGRDPVELDM +IS ELTNKTILVTGAGGSIGSEICRQV +F P++IILLGHGENSIY
Sbjct  261  DLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIY  320

Query  321  LINRELRNRFGKNVDIVPIIADVQNRARMFEIMETykpyavyhaaahkhvpLMEDNPEEA  380
             I++EL + +G+ +++VP+IADVQN++R++E+M+ +KPYAVYHAAAHKHVPLME NP+EA
Sbjct  321  SIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEA  380

Query  381  VHNNILGTKNTAEAAKNAEVKKFVMISTDKAVNPPNVMGASKRIAEMIIQSLNDETHRTN  440
            ++NNILGTKN AE+AK++EV KFVMISTDKAVNP+NVMGA+KRIAEM+IQSLN++  +T+
Sbjct  381  IRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTS  440

Query  441  FVAVRFGNVLGSRGSVIPLFKSQIEEGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAEG  500
            FVAVRFGNVLGSRGSVIPLFK+QIE GGPVTVTHPEMTRYFMTIPEASRLVLQAGALA+G
Sbjct  441  FVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQG  500

Query  501  GEVFVLDMGEPVKIVDLARNLIKLSGKKEDDIRITYTGIRPGEKMFEELMNKDEVHPEQV  560
            GEVFVLDMG PVKIVDLA+NLI+LSGKKE+DI I ++GIRPGEK++EEL+NK+E+HP+QV
Sbjct  501  GEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQV  560

Query  561  FEKIYRGKVQHMKCNEVEAIIQDIVNDFSKEKIINYAN  598
            +EKIYRGKV+H    EV+ I++D++N+FSKEK+++ AN
Sbjct  561  YEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLKIAN  598

36) SAI1T1_2001070 in NC_020529


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  657 bits (2482),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 419/578 (73%), Positives = 539/578 (94%), Gaps = 0/578 (0%)

Query  25   VTFSVFVSYYILEPYFKTYSVKllilaaislfisHHISAFIFNMYHRAWEYASVSELILI  84
            VTFSVF++Y ILEPYFK YS+ LL+L+++ L++SHHI A++FN+YHRAWEYASVSEL+ +
Sbjct  21   VTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEYASVSELMSV  80

Query  85   VKAvttsivitmvvvtivtGNRPFFRLYLITWMMHLILIGGSRLFWRIYRKYLGGKSFNK  144
            +KAVT+SIV+T+++V+++ ++ PF+RLY+ITWMMHL+LIGGSRLFWR+YR+Y+ +++ +K
Sbjct  81   LKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEK  140

Query  145  KPTLVVGAGQAGSMLIRQMLKSDEMKLEPVLAVDDDEHKRNITITEGVKVQGKIADIPEL  204
            K+TLVVGAGQ+GS+LIR+ML+S++M+++PVLAVDDD +K+++TITE VKVQG + DIPEL
Sbjct  141  KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPEL  200

Query  205  VRkykikkiiiaiptiGQERLKEINNICHMDGVELLKMPNIEDVMSGELEVNQLKKVEVE  264
            V+K++IKKIIIAIPT++Q RL+EIN+IC+++GVEL+KMPNIEDV+SGELEVN+LKKVEVE
Sbjct  201  VKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVE  260

Query  265  DLLGRDPVELDMDMISNELTNKTILVTGAGGSIGSEICRQVCNFYPERIILLGHGENSIY  324
            DLLGRDPVELDM +IS ELTNKTILVTGAGGSIGSEICRQV +F P++IILLGHGENSIY
Sbjct  261  DLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIY  320

Query  325  LINRELRNRFGKNVDIVPIIADVQNRARMFEIMETykpyavyhaaahkhvpLMEDNPEEA  384
             I++EL + +G+ +++VP+IADVQN++R++E+M+ +KPYAVYHAAAHKHVPLME NP+EA
Sbjct  321  SIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEA  380

Query  385  VHNNILGTKNTAEAAKNAEVKKFVMISTDKAVNPPNVMGASKRIAEMIIQSLNDETHRTN  444
            ++NNILGTKN AE+AK++EV KFVMISTDKAVNP+NVMGA+KRIAEM+IQSLN++  +T+
Sbjct  381  IRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTS  440

Query  445  FVAVRFGNVLGSRGSVIPLFKSQIEEGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAEG  504
            FVAVRFGNVLGSRGSVIPLFK+QIE GGPVTVTHPEMTRYFMTIPEASRLVLQAGALA+G
Sbjct  441  FVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQG  500

Query  505  GEVFVLDMGEPVKIVDLARNLIKLSGKKEDDIRITYTGIRPGEKMFEELMNKDEVHPEQV  564
            GEVFVLDMG PVKIVDLA+NLI+LSGKKE+DI I ++GIRPGEK++EEL+NK+E+HP+QV
Sbjct  501  GEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQV  560

Query  565  FEKIYRGKVQHMKCNEVEAIIQDIVNDFSKEKIINYAN  602
            +EKIYRGKV+H    EV+ I++D++N+FSKEK+++ AN
Sbjct  561  YEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLKIAN  598

37) SAI2T2_1001070 in NC_020564


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  657 bits (2482),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 419/578 (73%), Positives = 539/578 (94%), Gaps = 0/578 (0%)

Query  25   VTFSVFVSYYILEPYFKTYSVKllilaaislfisHHISAFIFNMYHRAWEYASVSELILI  84
            VTFSVF++Y ILEPYFK YS+ LL+L+++ L++SHHI A++FN+YHRAWEYASVSEL+ +
Sbjct  21   VTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEYASVSELMSV  80

Query  85   VKAvttsivitmvvvtivtGNRPFFRLYLITWMMHLILIGGSRLFWRIYRKYLGGKSFNK  144
            +KAVT+SIV+T+++V+++ ++ PF+RLY+ITWMMHL+LIGGSRLFWR+YR+Y+ +++ +K
Sbjct  81   LKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEK  140

Query  145  KPTLVVGAGQAGSMLIRQMLKSDEMKLEPVLAVDDDEHKRNITITEGVKVQGKIADIPEL  204
            K+TLVVGAGQ+GS+LIR+ML+S++M+++PVLAVDDD +K+++TITE VKVQG + DIPEL
Sbjct  141  KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPEL  200

Query  205  VRkykikkiiiaiptiGQERLKEINNICHMDGVELLKMPNIEDVMSGELEVNQLKKVEVE  264
            V+K++IKKIIIAIPT++Q RL+EIN+IC+++GVEL+KMPNIEDV+SGELEVN+LKKVEVE
Sbjct  201  VKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVE  260

Query  265  DLLGRDPVELDMDMISNELTNKTILVTGAGGSIGSEICRQVCNFYPERIILLGHGENSIY  324
            DLLGRDPVELDM +IS ELTNKTILVTGAGGSIGSEICRQV +F P++IILLGHGENSIY
Sbjct  261  DLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIY  320

Query  325  LINRELRNRFGKNVDIVPIIADVQNRARMFEIMETykpyavyhaaahkhvpLMEDNPEEA  384
             I++EL + +G+ +++VP+IADVQN++R++E+M+ +KPYAVYHAAAHKHVPLME NP+EA
Sbjct  321  SIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEA  380

Query  385  VHNNILGTKNTAEAAKNAEVKKFVMISTDKAVNPPNVMGASKRIAEMIIQSLNDETHRTN  444
            ++NNILGTKN AE+AK++EV KFVMISTDKAVNP+NVMGA+KRIAEM+IQSLN++  +T+
Sbjct  381  IRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTS  440

Query  445  FVAVRFGNVLGSRGSVIPLFKSQIEEGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAEG  504
            FVAVRFGNVLGSRGSVIPLFK+QIE GGPVTVTHPEMTRYFMTIPEASRLVLQAGALA+G
Sbjct  441  FVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQG  500

Query  505  GEVFVLDMGEPVKIVDLARNLIKLSGKKEDDIRITYTGIRPGEKMFEELMNKDEVHPEQV  564
            GEVFVLDMG PVKIVDLA+NLI+LSGKKE+DI I ++GIRPGEK++EEL+NK+E+HP+QV
Sbjct  501  GEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQV  560

Query  565  FEKIYRGKVQHMKCNEVEAIIQDIVNDFSKEKIINYAN  602
            +EKIYRGKV+H    EV+ I++D++N+FSKEK+++ AN
Sbjct  561  YEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLKIAN  598

38) SAI3T3_1001070 in NC_020532


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  657 bits (2482),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 419/578 (73%), Positives = 539/578 (94%), Gaps = 0/578 (0%)

Query  25   VTFSVFVSYYILEPYFKTYSVKllilaaislfisHHISAFIFNMYHRAWEYASVSELILI  84
            VTFSVF++Y ILEPYFK YS+ LL+L+++ L++SHHI A++FN+YHRAWEYASVSEL+ +
Sbjct  21   VTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEYASVSELMSV  80

Query  85   VKAvttsivitmvvvtivtGNRPFFRLYLITWMMHLILIGGSRLFWRIYRKYLGGKSFNK  144
            +KAVT+SIV+T+++V+++ ++ PF+RLY+ITWMMHL+LIGGSRLFWR+YR+Y+ +++ +K
Sbjct  81   LKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEK  140

Query  145  KPTLVVGAGQAGSMLIRQMLKSDEMKLEPVLAVDDDEHKRNITITEGVKVQGKIADIPEL  204
            K+TLVVGAGQ+GS+LIR+ML+S++M+++PVLAVDDD +K+++TITE VKVQG + DIPEL
Sbjct  141  KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPEL  200

Query  205  VRkykikkiiiaiptiGQERLKEINNICHMDGVELLKMPNIEDVMSGELEVNQLKKVEVE  264
            V+K++IKKIIIAIPT++Q RL+EIN+IC+++GVEL+KMPNIEDV+SGELEVN+LKKVEVE
Sbjct  201  VKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVE  260

Query  265  DLLGRDPVELDMDMISNELTNKTILVTGAGGSIGSEICRQVCNFYPERIILLGHGENSIY  324
            DLLGRDPVELDM +IS ELTNKTILVTGAGGSIGSEICRQV +F P++IILLGHGENSIY
Sbjct  261  DLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIY  320

Query  325  LINRELRNRFGKNVDIVPIIADVQNRARMFEIMETykpyavyhaaahkhvpLMEDNPEEA  384
             I++EL + +G+ +++VP+IADVQN++R++E+M+ +KPYAVYHAAAHKHVPLME NP+EA
Sbjct  321  SIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEA  380

Query  385  VHNNILGTKNTAEAAKNAEVKKFVMISTDKAVNPPNVMGASKRIAEMIIQSLNDETHRTN  444
            ++NNILGTKN AE+AK++EV KFVMISTDKAVNP+NVMGA+KRIAEM+IQSLN++  +T+
Sbjct  381  IRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTS  440

Query  445  FVAVRFGNVLGSRGSVIPLFKSQIEEGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAEG  504
            FVAVRFGNVLGSRGSVIPLFK+QIE GGPVTVTHPEMTRYFMTIPEASRLVLQAGALA+G
Sbjct  441  FVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQG  500

Query  505  GEVFVLDMGEPVKIVDLARNLIKLSGKKEDDIRITYTGIRPGEKMFEELMNKDEVHPEQV  564
            GEVFVLDMG PVKIVDLA+NLI+LSGKKE+DI I ++GIRPGEK++EEL+NK+E+HP+QV
Sbjct  501  GEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQV  560

Query  565  FEKIYRGKVQHMKCNEVEAIIQDIVNDFSKEKIINYAN  602
            +EKIYRGKV+H    EV+ I++D++N+FSKEK+++ AN
Sbjct  561  YEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLKIAN  598

39) SAI4T8_1001070 in NC_020533


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  657 bits (2482),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 419/578 (73%), Positives = 539/578 (94%), Gaps = 0/578 (0%)

Query  25   VTFSVFVSYYILEPYFKTYSVKllilaaislfisHHISAFIFNMYHRAWEYASVSELILI  84
            VTFSVF++Y ILEPYFK YS+ LL+L+++ L++SHHI A++FN+YHRAWEYASVSEL+ +
Sbjct  21   VTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEYASVSELMSV  80

Query  85   VKAvttsivitmvvvtivtGNRPFFRLYLITWMMHLILIGGSRLFWRIYRKYLGGKSFNK  144
            +KAVT+SIV+T+++V+++ ++ PF+RLY+ITWMMHL+LIGGSRLFWR+YR+Y+ +++ +K
Sbjct  81   LKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEK  140

Query  145  KPTLVVGAGQAGSMLIRQMLKSDEMKLEPVLAVDDDEHKRNITITEGVKVQGKIADIPEL  204
            K+TLVVGAGQ+GS+LIR+ML+S++M+++PVLAVDDD +K+++TITE VKVQG + DIPEL
Sbjct  141  KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPEL  200

Query  205  VRkykikkiiiaiptiGQERLKEINNICHMDGVELLKMPNIEDVMSGELEVNQLKKVEVE  264
            V+K++IKKIIIAIPT++Q RL+EIN+IC+++GVEL+KMPNIEDV+SGELEVN+LKKVEVE
Sbjct  201  VKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVE  260

Query  265  DLLGRDPVELDMDMISNELTNKTILVTGAGGSIGSEICRQVCNFYPERIILLGHGENSIY  324
            DLLGRDPVELDM +IS ELTNKTILVTGAGGSIGSEICRQV +F P++IILLGHGENSIY
Sbjct  261  DLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIY  320

Query  325  LINRELRNRFGKNVDIVPIIADVQNRARMFEIMETykpyavyhaaahkhvpLMEDNPEEA  384
             I++EL + +G+ +++VP+IADVQN++R++E+M+ +KPYAVYHAAAHKHVPLME NP+EA
Sbjct  321  SIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEA  380

Query  385  VHNNILGTKNTAEAAKNAEVKKFVMISTDKAVNPPNVMGASKRIAEMIIQSLNDETHRTN  444
            ++NNILGTKN AE+AK++EV KFVMISTDKAVNP+NVMGA+KRIAEM+IQSLN++  +T+
Sbjct  381  IRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTS  440

Query  445  FVAVRFGNVLGSRGSVIPLFKSQIEEGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAEG  504
            FVAVRFGNVLGSRGSVIPLFK+QIE GGPVTVTHPEMTRYFMTIPEASRLVLQAGALA+G
Sbjct  441  FVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQG  500

Query  505  GEVFVLDMGEPVKIVDLARNLIKLSGKKEDDIRITYTGIRPGEKMFEELMNKDEVHPEQV  564
            GEVFVLDMG PVKIVDLA+NLI+LSGKKE+DI I ++GIRPGEK++EEL+NK+E+HP+QV
Sbjct  501  GEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQV  560

Query  565  FEKIYRGKVQHMKCNEVEAIIQDIVNDFSKEKIINYAN  602
            +EKIYRGKV+H    EV+ I++D++N+FSKEK+++ AN
Sbjct  561  YEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLKIAN  598

40) SAI7S6_1001070 in NC_020537


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  657 bits (2482),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 419/578 (73%), Positives = 539/578 (94%), Gaps = 0/578 (0%)

Query  25   VTFSVFVSYYILEPYFKTYSVKllilaaislfisHHISAFIFNMYHRAWEYASVSELILI  84
            VTFSVF++Y ILEPYFK YS+ LL+L+++ L++SHHI A++FN+YHRAWEYASVSEL+ +
Sbjct  21   VTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEYASVSELMSV  80

Query  85   VKAvttsivitmvvvtivtGNRPFFRLYLITWMMHLILIGGSRLFWRIYRKYLGGKSFNK  144
            +KAVT+SIV+T+++V+++ ++ PF+RLY+ITWMMHL+LIGGSRLFWR+YR+Y+ +++ +K
Sbjct  81   LKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEK  140

Query  145  KPTLVVGAGQAGSMLIRQMLKSDEMKLEPVLAVDDDEHKRNITITEGVKVQGKIADIPEL  204
            K+TLVVGAGQ+GS+LIR+ML+S++M+++PVLAVDDD +K+++TITE VKVQG + DIPEL
Sbjct  141  KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPEL  200

Query  205  VRkykikkiiiaiptiGQERLKEINNICHMDGVELLKMPNIEDVMSGELEVNQLKKVEVE  264
            V+K++IKKIIIAIPT++Q RL+EIN+IC+++GVEL+KMPNIEDV+SGELEVN+LKKVEVE
Sbjct  201  VKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVE  260

Query  265  DLLGRDPVELDMDMISNELTNKTILVTGAGGSIGSEICRQVCNFYPERIILLGHGENSIY  324
            DLLGRDPVELDM +IS ELTNKTILVTGAGGSIGSEICRQV +F P++IILLGHGENSIY
Sbjct  261  DLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIY  320

Query  325  LINRELRNRFGKNVDIVPIIADVQNRARMFEIMETykpyavyhaaahkhvpLMEDNPEEA  384
             I++EL + +G+ +++VP+IADVQN++R++E+M+ +KPYAVYHAAAHKHVPLME NP+EA
Sbjct  321  SIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEA  380

Query  385  VHNNILGTKNTAEAAKNAEVKKFVMISTDKAVNPPNVMGASKRIAEMIIQSLNDETHRTN  444
            ++NNILGTKN AE+AK++EV KFVMISTDKAVNP+NVMGA+KRIAEM+IQSLN++  +T+
Sbjct  381  IRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTS  440

Query  445  FVAVRFGNVLGSRGSVIPLFKSQIEEGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAEG  504
            FVAVRFGNVLGSRGSVIPLFK+QIE GGPVTVTHPEMTRYFMTIPEASRLVLQAGALA+G
Sbjct  441  FVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQG  500

Query  505  GEVFVLDMGEPVKIVDLARNLIKLSGKKEDDIRITYTGIRPGEKMFEELMNKDEVHPEQV  564
            GEVFVLDMG PVKIVDLA+NLI+LSGKKE+DI I ++GIRPGEK++EEL+NK+E+HP+QV
Sbjct  501  GEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQV  560

Query  565  FEKIYRGKVQHMKCNEVEAIIQDIVNDFSKEKIINYAN  602
            +EKIYRGKV+H    EV+ I++D++N+FSKEK+++ AN
Sbjct  561  YEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLKIAN  598

41) SAI5S5_1001060 in NC_020566


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  657 bits (2482),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 419/578 (73%), Positives = 539/578 (94%), Gaps = 0/578 (0%)

Query  25   VTFSVFVSYYILEPYFKTYSVKllilaaislfisHHISAFIFNMYHRAWEYASVSELILI  84
            VTFSVF++Y ILEPYFK YS+ LL+L+++ L++SHHI A++FN+YHRAWEYASVSEL+ +
Sbjct  21   VTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEYASVSELMSV  80

Query  85   VKAvttsivitmvvvtivtGNRPFFRLYLITWMMHLILIGGSRLFWRIYRKYLGGKSFNK  144
            +KAVT+SIV+T+++V+++ ++ PF+RLY+ITWMMHL+LIGGSRLFWR+YR+Y+ +++ +K
Sbjct  81   LKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEK  140

Query  145  KPTLVVGAGQAGSMLIRQMLKSDEMKLEPVLAVDDDEHKRNITITEGVKVQGKIADIPEL  204
            K+TLVVGAGQ+GS+LIR+ML+S++M+++PVLAVDDD +K+++TITE VKVQG + DIPEL
Sbjct  141  KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPEL  200

Query  205  VRkykikkiiiaiptiGQERLKEINNICHMDGVELLKMPNIEDVMSGELEVNQLKKVEVE  264
            V+K++IKKIIIAIPT++Q RL+EIN+IC+++GVEL+KMPNIEDV+SGELEVN+LKKVEVE
Sbjct  201  VKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVE  260

Query  265  DLLGRDPVELDMDMISNELTNKTILVTGAGGSIGSEICRQVCNFYPERIILLGHGENSIY  324
            DLLGRDPVELDM +IS ELTNKTILVTGAGGSIGSEICRQV +F P++IILLGHGENSIY
Sbjct  261  DLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIY  320

Query  325  LINRELRNRFGKNVDIVPIIADVQNRARMFEIMETykpyavyhaaahkhvpLMEDNPEEA  384
             I++EL + +G+ +++VP+IADVQN++R++E+M+ +KPYAVYHAAAHKHVPLME NP+EA
Sbjct  321  SIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEA  380

Query  385  VHNNILGTKNTAEAAKNAEVKKFVMISTDKAVNPPNVMGASKRIAEMIIQSLNDETHRTN  444
            ++NNILGTKN AE+AK++EV KFVMISTDKAVNP+NVMGA+KRIAEM+IQSLN++  +T+
Sbjct  381  IRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTS  440

Query  445  FVAVRFGNVLGSRGSVIPLFKSQIEEGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAEG  504
            FVAVRFGNVLGSRGSVIPLFK+QIE GGPVTVTHPEMTRYFMTIPEASRLVLQAGALA+G
Sbjct  441  FVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQG  500

Query  505  GEVFVLDMGEPVKIVDLARNLIKLSGKKEDDIRITYTGIRPGEKMFEELMNKDEVHPEQV  564
            GEVFVLDMG PVKIVDLA+NLI+LSGKKE+DI I ++GIRPGEK++EEL+NK+E+HP+QV
Sbjct  501  GEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQV  560

Query  565  FEKIYRGKVQHMKCNEVEAIIQDIVNDFSKEKIINYAN  602
            +EKIYRGKV+H    EV+ I++D++N+FSKEK+++ AN
Sbjct  561  YEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLKIAN  598

42) SAI6T6_1001070 in NC_020536


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  657 bits (2482),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 419/578 (73%), Positives = 539/578 (94%), Gaps = 0/578 (0%)

Query  25   VTFSVFVSYYILEPYFKTYSVKllilaaislfisHHISAFIFNMYHRAWEYASVSELILI  84
            VTFSVF++Y ILEPYFK YS+ LL+L+++ L++SHHI A++FN+YHRAWEYASVSEL+ +
Sbjct  21   VTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEYASVSELMSV  80

Query  85   VKAvttsivitmvvvtivtGNRPFFRLYLITWMMHLILIGGSRLFWRIYRKYLGGKSFNK  144
            +KAVT+SIV+T+++V+++ ++ PF+RLY+ITWMMHL+LIGGSRLFWR+YR+Y+ +++ +K
Sbjct  81   LKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEK  140

Query  145  KPTLVVGAGQAGSMLIRQMLKSDEMKLEPVLAVDDDEHKRNITITEGVKVQGKIADIPEL  204
            K+TLVVGAGQ+GS+LIR+ML+S++M+++PVLAVDDD +K+++TITE VKVQG + DIPEL
Sbjct  141  KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPEL  200

Query  205  VRkykikkiiiaiptiGQERLKEINNICHMDGVELLKMPNIEDVMSGELEVNQLKKVEVE  264
            V+K++IKKIIIAIPT++Q RL+EIN+IC+++GVEL+KMPNIEDV+SGELEVN+LKKVEVE
Sbjct  201  VKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVE  260

Query  265  DLLGRDPVELDMDMISNELTNKTILVTGAGGSIGSEICRQVCNFYPERIILLGHGENSIY  324
            DLLGRDPVELDM +IS ELTNKTILVTGAGGSIGSEICRQV +F P++IILLGHGENSIY
Sbjct  261  DLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIY  320

Query  325  LINRELRNRFGKNVDIVPIIADVQNRARMFEIMETykpyavyhaaahkhvpLMEDNPEEA  384
             I++EL + +G+ +++VP+IADVQN++R++E+M+ +KPYAVYHAAAHKHVPLME NP+EA
Sbjct  321  SIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEA  380

Query  385  VHNNILGTKNTAEAAKNAEVKKFVMISTDKAVNPPNVMGASKRIAEMIIQSLNDETHRTN  444
            ++NNILGTKN AE+AK++EV KFVMISTDKAVNP+NVMGA+KRIAEM+IQSLN++  +T+
Sbjct  381  IRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTS  440

Query  445  FVAVRFGNVLGSRGSVIPLFKSQIEEGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAEG  504
            FVAVRFGNVLGSRGSVIPLFK+QIE GGPVTVTHPEMTRYFMTIPEASRLVLQAGALA+G
Sbjct  441  FVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQG  500

Query  505  GEVFVLDMGEPVKIVDLARNLIKLSGKKEDDIRITYTGIRPGEKMFEELMNKDEVHPEQV  564
            GEVFVLDMG PVKIVDLA+NLI+LSGKKE+DI I ++GIRPGEK++EEL+NK+E+HP+QV
Sbjct  501  GEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQV  560

Query  565  FEKIYRGKVQHMKCNEVEAIIQDIVNDFSKEKIINYAN  602
            +EKIYRGKV+H    EV+ I++D++N+FSKEK+++ AN
Sbjct  561  YEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLKIAN  598

43) SAI8T7_1001070 in NC_020568


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  657 bits (2482),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 419/578 (73%), Positives = 539/578 (94%), Gaps = 0/578 (0%)

Query  25   VTFSVFVSYYILEPYFKTYSVKllilaaislfisHHISAFIFNMYHRAWEYASVSELILI  84
            VTFSVF++Y ILEPYFK YS+ LL+L+++ L++SHHI A++FN+YHRAWEYASVSEL+ +
Sbjct  21   VTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEYASVSELMSV  80

Query  85   VKAvttsivitmvvvtivtGNRPFFRLYLITWMMHLILIGGSRLFWRIYRKYLGGKSFNK  144
            +KAVT+SIV+T+++V+++ ++ PF+RLY+ITWMMHL+LIGGSRLFWR+YR+Y+ +++ +K
Sbjct  81   LKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEK  140

Query  145  KPTLVVGAGQAGSMLIRQMLKSDEMKLEPVLAVDDDEHKRNITITEGVKVQGKIADIPEL  204
            K+TLVVGAGQ+GS+LIR+ML+S++M+++PVLAVDDD +K+++TITE VKVQG + DIPEL
Sbjct  141  KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPEL  200

Query  205  VRkykikkiiiaiptiGQERLKEINNICHMDGVELLKMPNIEDVMSGELEVNQLKKVEVE  264
            V+K++IKKIIIAIPT++Q RL+EIN+IC+++GVEL+KMPNIEDV+SGELEVN+LKKVEVE
Sbjct  201  VKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVE  260

Query  265  DLLGRDPVELDMDMISNELTNKTILVTGAGGSIGSEICRQVCNFYPERIILLGHGENSIY  324
            DLLGRDPVELDM +IS ELTNKTILVTGAGGSIGSEICRQV +F P++IILLGHGENSIY
Sbjct  261  DLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIY  320

Query  325  LINRELRNRFGKNVDIVPIIADVQNRARMFEIMETykpyavyhaaahkhvpLMEDNPEEA  384
             I++EL + +G+ +++VP+IADVQN++R++E+M+ +KPYAVYHAAAHKHVPLME NP+EA
Sbjct  321  SIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEA  380

Query  385  VHNNILGTKNTAEAAKNAEVKKFVMISTDKAVNPPNVMGASKRIAEMIIQSLNDETHRTN  444
            ++NNILGTKN AE+AK++EV KFVMISTDKAVNP+NVMGA+KRIAEM+IQSLN++  +T+
Sbjct  381  IRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTS  440

Query  445  FVAVRFGNVLGSRGSVIPLFKSQIEEGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAEG  504
            FVAVRFGNVLGSRGSVIPLFK+QIE GGPVTVTHPEMTRYFMTIPEASRLVLQAGALA+G
Sbjct  441  FVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQG  500

Query  505  GEVFVLDMGEPVKIVDLARNLIKLSGKKEDDIRITYTGIRPGEKMFEELMNKDEVHPEQV  564
            GEVFVLDMG PVKIVDLA+NLI+LSGKKE+DI I ++GIRPGEK++EEL+NK+E+HP+QV
Sbjct  501  GEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQV  560

Query  565  FEKIYRGKVQHMKCNEVEAIIQDIVNDFSKEKIINYAN  602
            +EKIYRGKV+H    EV+ I++D++N+FSKEK+++ AN
Sbjct  561  YEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLKIAN  598

44) SAKOR_00132 in NC_022226


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  654 bits (2472),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 418/578 (73%), Positives = 539/578 (94%), Gaps = 0/578 (0%)

Query  52   VTFSVFVSYYILEPYFKTYSVKllilaaislfisHHISAFIFNMYHRAWEYASVSELILI  111
            VTFSVF++Y ILEPYFK YS+ LL+L+++ L++SHHI A++FN+YHRAWEYASVSEL+ +
Sbjct  21   VTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEYASVSELMSV  80

Query  112  VKAvttsivitmvvvtivtGNRPFFRLYLITWMMHLILIGGSRLFWRIYRKYLGGKSFNK  171
            +KAVT+SIV+T+++V+++ ++ PF+RLY+ITWMMHL+LIGGSRLFWR+YR+Y+ +++ +K
Sbjct  81   LKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEK  140

Query  172  KPTLVVGAGQAGSMLIRQMLKSDEMKLEPVLAVDDDEHKRNITITEGVKVQGKIADIPEL  231
            K+TLVVGAGQ+GS+LIR+ML+S++M+++PVLAVDDD +K+++TITE VKVQG + DIPEL
Sbjct  141  KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPEL  200

Query  232  VRkykikkiiiaiptiGQERLKEINNICHMDGVELLKMPNIEDVMSGELEVNQLKKVEVE  291
            V+K++IKKIIIAIPT++Q RL+EIN+IC+++GVEL+KMPNIEDV+SGELEVN+LKKVEVE
Sbjct  201  VKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVE  260

Query  292  DLLGRDPVELDMDMISNELTNKTILVTGAGGSIGSEICRQVCNFYPERIILLGHGENSIY  351
            DLLGRDPVELDM +IS ELTNKTILVTGAGGSIGSEICRQV +F P++IILLGHGENSIY
Sbjct  261  DLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIY  320

Query  352  LINRELRNRFGKNVDIVPIIADVQNRARMFEIMEMykpyavyhaaahkhvpLMEDNPEEA  411
             I++EL + +G+ +++VP+IADVQN++R++E+M+ +KPYAVYHAAAHKHVPLME NP+EA
Sbjct  321  SIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEA  380

Query  412  VRNNILGTKNTAEAAKNAEVKKFVMISTDKAVNPPNVMGASKRIAEMIIQSLNDETHRTN  471
            +RNNILGTKN AE+AK++EV KFVMISTDKAVNP+NVMGA+KRIAEM+IQSLN++  +T+
Sbjct  381  IRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTS  440

Query  472  FVAVRFGNVLGSRGSVIPLFKSQIEEGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAED  531
            FVAVRFGNVLGSRGSVIPLFK+QIE GGPVTVTHPEMTRYFMTIPEASRLVLQAGALA++
Sbjct  441  FVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQG  500

Query  532  GEVFVLDMGEPVKIVDLARNLIKLSGKKEDDIRITYTGIRPGEKMFEELMNKDEVHPEQV  591
            GEVFVLDMG PVKIVDLA+NLI+LSGKKE+DI I ++GIRPGEK++EEL+NK+E+HP+QV
Sbjct  501  GEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQV  560

Query  592  FEKIYRGKVQHMKCNEVEAIIQDIVNDFSKEKIINYGN  629
            +EKIYRGKV+H    EV+ I++D++N+FSKEK+++ +N
Sbjct  561  YEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLKIAN  598

45) capD in NC_017763


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  654 bits (2472),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 418/578 (73%), Positives = 539/578 (94%), Gaps = 0/578 (0%)

Query  21   VTFSVFVSYYILEPYFKTYSVKllilaaislfisHHISAFIFNMYHRAWEYASVSELILI  80
            VTFSVF++Y ILEPYFK YS+ LL+L+++ L++SHHI A++FN+YHRAWEYASVSEL+ +
Sbjct  21   VTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEYASVSELMSV  80

Query  81   VKAvttsivitmvvvtivtGNRPFFRLYLITWMMHLILIGGSRLFWRIYRKYLGGKSFNK  140
            +KAVT+SIV+T+++V+++ ++ PF+RLY+ITWMMHL+LIGGSRLFWR+YR+Y+ +++ +K
Sbjct  81   LKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEK  140

Query  141  KPTLVVGAGQAGSMLIRQMLKSDEMKLEPVLAVDDDEHKRNITITEGVKVQGEIADIPEL  200
            K+TLVVGAGQ+GS+LIR+ML+S++M+++PVLAVDDD +K+++TITE VKVQG + DIPEL
Sbjct  141  KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPEL  200

Query  201  VRkykikkiiiaiptiGQERLKEINNICHMDGVELLKMPNIEDVMSGELEVNQLKKVEVE  260
            V+K++IKKIIIAIPT++Q RL+EIN+IC+++GVEL+KMPNIEDV+SGELEVN+LKKVEVE
Sbjct  201  VKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVE  260

Query  261  DLLGRDPVELDMDMISNELTNKTILVTGAGGSIGSEICRQVCNFYPERIILLGHGENSIY  320
            DLLGRDPVELDM +IS ELTNKTILVTGAGGSIGSEICRQV +F P++IILLGHGENSIY
Sbjct  261  DLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIY  320

Query  321  LINRELRNRFGKNVDIVPIIADVQNRARMFEILEMykpyavyhaaahkhvpLMEDNPEEA  380
             I++EL + +G+ +++VP+IADVQN++R++E+++ +KPYAVYHAAAHKHVPLME NP+EA
Sbjct  321  SIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEA  380

Query  381  VRNNILGTKNTAEAAKNAEVKKFVMISTDKAVNPPNVMGASKRIAEMIIQSLNDETHQTN  440
            +RNNILGTKN AE+AK++EV KFVMISTDKAVNP+NVMGA+KRIAEM+IQSLN++  +T+
Sbjct  381  IRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTS  440

Query  441  FVAVRFGNVLGSRGSVIPLFKSQIEEGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAEG  500
            FVAVRFGNVLGSRGSVIPLFK+QIE GGPVTVTHPEMTRYFMTIPEASRLVLQAGALA+G
Sbjct  441  FVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQG  500

Query  501  GEVFVLDMGEPVKIVDLARNLIKLSGKKEDDIRITYTGIRSGEKMFEELMNKDEVHPEQV  560
            GEVFVLDMG PVKIVDLA+NLI+LSGKKE+DI I ++GIR+GEK++EEL+NK+E+HP+QV
Sbjct  501  GEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQV  560

Query  561  FEKIYRGKVQHMKCNEVEAIIQDIVNDFSKEKIINYAN  598
            +EKIYRGKV+H    EV+ I++D++N+FSKEK+++ AN
Sbjct  561  YEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLKIAN  598

46) capD in NC_007622


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  653 bits (2468),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 418/578 (73%), Positives = 536/578 (93%), Gaps = 0/578 (0%)

Query  21   VTFSVFVSYYILEPYFKTYSVKllilaaislfisHHISAFIFNMYHRAWEYASVSELILI  80
            VTFSVF++Y ILEPYFK YS+ LL+L+++ L++SHHI A++FN+YHRAWEYASVSEL+ +
Sbjct  21   VTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEYASVSELMSV  80

Query  81   VKAvttsivitmvvvtivtGNRPFFRLYLITWMMHLILIGGSRLFWRIYRKYLGGKSFNK  140
            +KAVT+SIV+T+++V+++ ++ PF+RLY+ITWMMHL+LIGGSRLFWR+YR+Y+ +++ +K
Sbjct  81   LKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEK  140

Query  141  KPTLVVGAGQAGSMLIRQMLKSDEMKLEPVLAVDDDEHKRNITITEGVKVQGKIADIPEL  200
            K+TLVVGAGQ+GS+LIR+ML+S++M+++PVLAVDDD +K+++TITE VKVQG + DIPEL
Sbjct  141  KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPEL  200

Query  201  VRkykikkiiiaiptiGQERLKEINNICHMDGVELLKMPNIEDVMSGELEVNQLKKVEVE  260
            V+K++IKKIIIAIPT++Q RL+EIN+IC+++GVEL+KMPNIEDV+SGELEVN+LKKVEVE
Sbjct  201  VKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVE  260

Query  261  DLLGRDPVELDMDMISNELTNKTILVTGAGGSIGSEICRQVCNFYPERIILLGHGENSIY  320
            DLLGRDPVELDM +IS ELTNKTILVTGAGGSIGSEICRQV +F P++IILLGHGENSIY
Sbjct  261  DLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIY  320

Query  321  LINRELRNRFGKNVDIVPIIADVQNSARMFEIMEMykpyavyhaaahkhvpLMEDNPEEA  380
             I++EL + +G+ +++VP+IADVQN +R++E+M+ +KPYAVYHAAAHKHVPLME NP+EA
Sbjct  321  SIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEA  380

Query  381  VCNNILGTKNTAEAAKNAEVKKFVMISTDKAVNPPNVMGASKRIAEMIIQSLNDETHRTN  440
            + NNILGTKN AE+AK++EV KFVMISTDKAVNP+NVMGA+KRIAEM+IQSLN++  +T+
Sbjct  381  IRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTS  440

Query  441  FVVVRFGNVLGSRGSVIPLFKSQIEEGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAEG  500
            FV VRFGNVLGSRGSVIPLFK+QIE GGPVTVTHPEMTRYFMTIPEASRLVLQAGALA+G
Sbjct  441  FVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQG  500

Query  501  GEVFVLDMGEPVKIVDLARNLIKLSGKKEDDIRITYTGIRPGEKMFEELMNKDEVHPEQV  560
            GEVFVLDMG PVKIVDLA+NLI+LSGKKE+DI I ++GIRPGEK++EEL+NK+E+HP+QV
Sbjct  501  GEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQV  560

Query  561  FEKIYRGKVQHMKCNEVEAIIQDIVNDFSKEKIINYAN  598
            +EKIYRGKV+H    EV+ I++D++N+FSKEK+++ AN
Sbjct  561  YEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLKIAN  598

47) capD in NC_007168


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  643 bits (2431),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 416/578 (72%), Positives = 520/578 (90%), Gaps = 0/578 (0%)

Query  21   VAFSVFICYNILEPFFEGYSRDllivnsivllisHHVFAYIFNLYHRAWEYASVNELLLI  80
            V+FSVF+ Y ILEP+F GYS DLL+++S++LL+SHH+FAY+FNLYHRAWEYASV+EL+ +
Sbjct  21   VTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEYASVSELMSV  80

Query  81   VESVTCSIITTMILVPIFTAHPPFFRLYLITWMMHLILIGGSRISWRVARGFVVGKKLKK  140
            + +VT SI+ T++LV+++ +++PF+RLY+ITWMMHL+LIGGSR+ WRV R + +++ + K
Sbjct  81   LKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEK  140

Query  141  KPTLIVGAGRGGSLLIRQMLRSPEMGLEPVLVVDDDPQKKKLTIAEGVKVQGSIDDIPNL  200
            K+TL+VGAG+GGS+LIR+MLRS +M ++PVL VDDD +K+K+TI+E VKVQG ++DIP+L
Sbjct  141  KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPEL  200

Query  201  VNKYRIKRIIIAIPTLKPDRLKEINNICNSTGIELFKMPSIEQVLVGELEVNQLKRVEVE  260
            V+K+RIK+IIIAIPTL   RL+EIN+ICN  G+ELFKMP+IE+VL GELEVN+LK+VEVE
Sbjct  201  VKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVE  260

Query  261  DLLGREPVELDMAMISKELTHKTIMITGAGGSIGSEICRQVCKFEPERILLLGHGENSIY  320
            DLLGR+PVELDMA+IS+ELT+KTI++TGAGGSIGSEICRQV KF+P++I+LLGHGENSIY
Sbjct  261  DLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIY  320

Query  321  LIHQELNaiykdkieiipiiadVQNGDRIQEIMDkykpyavyhaaahkhvpLMEYNPIEA  380
             IHQEL+  Y ++IE++P+IADVQN  RI E+M+ +KPYAVYHAAAHKHVPLMEYNP EA
Sbjct  321  SIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEA  380

Query  381  FKNNVLGTRNVATVAKNVGVRKFVMVSTDKAVNPPNVMGASKRVAEMVVQSLNDENCVTD  440
            ++NN+LGT+NVA  AK+  V KFVM+STDKAVNP+NVMGA+KR+AEMV+QSLN++N  T 
Sbjct  381  IRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTS  440

Query  441  FVAVRFGNVLGSRGSVIPLFKKQIAAGGPVTVTHPDMTRYFMTIPEASRLVLQAGALAKG  500
            FVAVRFGNVLGSRGSVIPLFK+QI +GGPVTVTHP+MTRYFMTIPEASRLVLQAGALA+G
Sbjct  441  FVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQG  500

Query  501  GEVFVLDMGEPVKIVDLARNLIRLSGKTEDEIPIKFSGIRPGEKMYEELLNENEIHPEQV  560
            GEVFVLDMG PVKIVDLA+NLIRLSGK E++I I FSGIRPGEK+YEELLN NEIHP+QV
Sbjct  501  GEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQV  560

Query  561  YEKIYRGKVRDFSKEEVDAIVSDLANDFKKEKIIKIAN  598
            YEKIYRGKV ++ K EVD IV DL N+F KEK++KIAN
Sbjct  561  YEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLKIAN  598

48) capD in NC_022443


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  622 bits (2352),  Expect = 1e-179, Method: Compositional matrix adjust.
 Identities = 394/535 (74%), Positives = 501/535 (94%), Gaps = 0/535 (0%)

Query  1    MYHRAWEYASVSELILIVKAvttsivitmvvvtivtGNRPFFRLYLITWMMHLILIGGSR  60
            +YHRAWEYASVSEL+ ++KAVT+SIV+T+++V+++ ++ PF+RLY+ITWMMHL+LIGGSR
Sbjct  64   LYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSR  123

Query  61   LFWRIYRKYLGGKSFNKKPTLVVGAGQAGSMLIRQMLKSDEMKLEPVLAVDDDEHKRNIT  120
            LFWR+YR+Y+ +++ +KK+TLVVGAGQ+GS+LIR+ML+S++M+++PVLAVDDD +K+++T
Sbjct  124  LFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMT  183

Query  121  ITEGVKVQGKIADIPELVRkykikkiiiaiptiGQERLKEINNICHMDGVELLKMPNIED  180
            ITE VKVQG + DIPELV+K++IKKIIIAIPT++Q RL+EIN+IC+++GVEL+KMPNIED
Sbjct  184  ITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIED  243

Query  181  VMSGELEVNQLKKVEVEDLLGRDPVELDMDMISNELTNKTILVTGAGGSIGSEICRQVCN  240
            V+SGELEVN+LKKVEVEDLLGRDPVELDM +IS ELTNKTILVTGAGGSIGSEICRQV +
Sbjct  244  VLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSK  303

Query  241  FYPERIILLGHGENSIYLINRELRNRFGKNIDIVPIIADVQNRARMFEIMEMykpyavyh  300
            F P++IILLGHGENSIY I++EL + +G+ I++VP+IADVQN++R++E+M+ +KPYAVYH
Sbjct  304  FDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYH  363

Query  301  aaahkhvpLMEDNPEEAVRNNILGTKNTAEAAKNAEVKKFVMISTDKAVNPPNVMGASKR  360
            AAAHKHVPLME NP+EA+RNNILGTKN AE+AK++EV KFVMISTDKAVNP+NVMGA+KR
Sbjct  364  AAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKR  423

Query  361  IAEMIIQSLNDETHRTNFVAVRFGNVLGSRGSVIPLFKSQIEEGGPVTVTHPEMTRYFMT  420
            IAEM+IQSLN++  +T+FVAVRFGNVLGSRGSVIPLFK+QIE GGPVTVTHPEMTRYFMT
Sbjct  424  IAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMT  483

Query  421  IPEASRLVLQAGALAEGGEVFVLDMGEPVKIVDLARNLIKLSGKKEDDIRITYTGIRPGE  480
            IPEASRLVLQAGALA+GGEVFVLDMG PVKIVDLA+NLI+LSGKKE+DI I ++GIRPGE
Sbjct  484  IPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGE  543

Query  481  KMFEELMNKDEVHPEQVFEKIYRGKVQHMKCNEVEAIIQDIVNDFSKEKIINYAN  535
            K++EEL+NK+E+HP+QV+EKIYRGKV+H    EV+ I++D++N+FSKEK+++ AN
Sbjct  544  KLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLKIAN  598

49) capD in NC_022442


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  622 bits (2352),  Expect = 1e-179, Method: Compositional matrix adjust.
 Identities = 394/535 (74%), Positives = 501/535 (94%), Gaps = 0/535 (0%)

Query  1    MYHRAWEYASVSELILIVKAvttsivitmvvvtivtGNRPFFRLYLITWMMHLILIGGSR  60
            +YHRAWEYASVSEL+ ++KAVT+SIV+T+++V+++ ++ PF+RLY+ITWMMHL+LIGGSR
Sbjct  64   LYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSR  123

Query  61   LFWRIYRKYLGGKSFNKKPTLVVGAGQAGSMLIRQMLKSDEMKLEPVLAVDDDEHKRNIT  120
            LFWR+YR+Y+ +++ +KK+TLVVGAGQ+GS+LIR+ML+S++M+++PVLAVDDD +K+++T
Sbjct  124  LFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMT  183

Query  121  ITEGVKVQGKIADIPELVRkykikkiiiaiptiGQERLKEINNICHMDGVELLKMPNIED  180
            ITE VKVQG + DIPELV+K++IKKIIIAIPT++Q RL+EIN+IC+++GVEL+KMPNIED
Sbjct  184  ITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIED  243

Query  181  VMSGELEVNQLKKVEVEDLLGRDPVELDMDMISNELTNKTILVTGAGGSIGSEICRQVCN  240
            V+SGELEVN+LKKVEVEDLLGRDPVELDM +IS ELTNKTILVTGAGGSIGSEICRQV +
Sbjct  244  VLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSK  303

Query  241  FYPERIILLGHGENSIYLINRELRNRFGKNIDIVPIIADVQNRARMFEIMEMykpyavyh  300
            F P++IILLGHGENSIY I++EL + +G+ I++VP+IADVQN++R++E+M+ +KPYAVYH
Sbjct  304  FDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYH  363

Query  301  aaahkhvpLMEDNPEEAVRNNILGTKNTAEAAKNAEVKKFVMISTDKAVNPPNVMGASKR  360
            AAAHKHVPLME NP+EA+RNNILGTKN AE+AK++EV KFVMISTDKAVNP+NVMGA+KR
Sbjct  364  AAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKR  423

Query  361  IAEMIIQSLNDETHRTNFVAVRFGNVLGSRGSVIPLFKSQIEEGGPVTVTHPEMTRYFMT  420
            IAEM+IQSLN++  +T+FVAVRFGNVLGSRGSVIPLFK+QIE GGPVTVTHPEMTRYFMT
Sbjct  424  IAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMT  483

Query  421  IPEASRLVLQAGALAEGGEVFVLDMGEPVKIVDLARNLIKLSGKKEDDIRITYTGIRPGE  480
            IPEASRLVLQAGALA+GGEVFVLDMG PVKIVDLA+NLI+LSGKKE+DI I ++GIRPGE
Sbjct  484  IPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGE  543

Query  481  KMFEELMNKDEVHPEQVFEKIYRGKVQHMKCNEVEAIIQDIVNDFSKEKIINYAN  535
            K++EEL+NK+E+HP+QV+EKIYRGKV+H    EV+ I++D++N+FSKEK+++ AN
Sbjct  544  KLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLKIAN  598

50) MCCL_0670 in NC_011999


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  574 bits (2166),  Expect = 6e-165, Method: Compositional matrix adjust.
 Identities = 358/597 (60%), Positives = 504/597 (85%), Gaps = 2/597 (0%)

Query  1    MTAKKRLMFLIFLDSIIVSLSVFFCYSIIFPFFKGNQLNDllvysvllllshhlFAYIFN  60
            ++AK R+++LI++DS+IV++SVF+ Y+I+ P+FKG  ++ L++ SV+LL+SHH+FAY+FN
Sbjct  4    ISAKLRFLILIIIDSFIVTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFN  63

Query  61   LYHRAWEYASINELLAIVKGVTAsiiltsilsliiNGQV-FIRLIFITWMMHLILIGGSR  119
            LYHRAWEYAS++EL++++K+VT+SI++T +L  ++ ++  F+RL FITWMMHL+LIGGSR
Sbjct  64   LYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSR  123

Query  120  ISWRVLRRHILDKDIELIPTLVVGAGRGGNLLIHQMLSTPTMEMKPvvvvdddINKKNIE  179
            + WRV RR ++D+ +E  +TLVVGAG+GG++LI++ML +  M M+PV+ VDDD NK+++ 
Sbjct  124  LFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMT  183

Query  180  LTDGIKVKGTTEDIHSLVTKYDIKRIVIAIPSLDKQKLNDIHKAATETGSEVLIMPNIDD  239
            +T+ +KV+G  EDI  LV K+ IK+I+IAIP+L +++LN+I+K     G E++ MPNI+D
Sbjct  184  ITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIED  243

Query  240  VMAGKLEVSQLKKVEVEDLLGRDPIELDDQGILEQIEGKTILVTGAGGSIGSELCRQIVK  299
            V++G LEV++LKKVEVEDLLGRDP+ELD   I  ++  KTILVTGAGGSIGSE+CRQ+ K
Sbjct  244  VLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSK  303

Query  300  YKPRRLVVLGHGENSIYLINEELNNKLLGSVEIIPIIADVQDRERMFKQMLKYKPDIVYH  359
            + P+++++LGHGENSIY I++EL++     +E++P+IADVQ++ R++  M  +KP  VYH
Sbjct  304  FDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYH  363

Query  360  AAAHKHVPLMEYNSTEAVKNNIIGTKNTAEAALNASVKRFVLVSTDKAVNPPNVMGATKR  419
            AAAHKHVPLMEYN+ EA++NNI+GTKN AE+A ++ V +FV++STDKAVNP+NVMGATKR
Sbjct  364  AAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKR  423

Query  420  MAEMVIQALDTQSKTTRFVAVRFGNVLGSRGSVIPKFKQQIEAGGPVTVTHPDMTRYFMT  479
            +AEMVIQ+L+ ++  T FVAVRFGNVLGSRGSVIP FK+QIE+GGPVTVTHP+MTRYFMT
Sbjct  424  IAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMT  483

Query  480  IPEASRLVIQAGALANGGEIFVLDMGEPVKIVNLAKNMIKLSGFSEEDIKIEFSGIRPGE  539
            IPEASRLV+QAGALA+GGE+FVLDMG PVKIV+LAKN+I+LSG  EEDI IEFSGIRPGE
Sbjct  484  IPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGE  543

Query  540  KLFEELLDADEIHPEQIYPKIYIGKANEINIADLENIIPKILKSNNLKEDLLNFIKK  596
            KL+EELL+ +EIHP+Q+Y KIY GK ++   ++++ I+  ++++ + KE LL++ ++
Sbjct  544  KLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFS-KEKLLKIANR  599

51) capD'' in NC_012121


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  530 bits (1999),  Expect = 6e-152, Method: Compositional matrix adjust.
 Identities = 338/455 (75%), Positives = 406/455 (90%), Gaps = 0/455 (0%)

Query  1    MVVGAGRGGYFLIRQMLTTSNMGLEPVLAVDDDPNKQNISITMGVKVQGYINDIPELVNk  60
            +VVGAG+GG  LIR+ML + +M ++PVLAVDDD NKQ+++IT  VKVQGY++DIPELV+K
Sbjct  144  LVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKK  203

Query  61   fkikkiiiaiPTLSQKRLREITELCKNLNVEVLIMPDIESVMTGELEVNQLKKVDVEDLL  120
            F+IKKIIIAIPTLSQKRL EI  +C+   VE++ MP+IE V++GELEVN+LKKV+VEDLL
Sbjct  204  FRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLL  263

Query  121  GRDPVELDMKMISEELTNKTILVTGAGGSIGSEICRQVCKFAPKKIVLLGHGENSIYLIH  180
            GRDPVELDM +IS ELTNKTILVTGAGGSIGSEICRQV KF P+KI+LLGHGENSIY IH
Sbjct  264  GRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIH  323

Query  181  RELLKQYRDEIEIVPVIADVQDRERIMNVMKTHKPYFVYHAAAHKHVPMMEYNPEEAVKN  240
            +EL K Y + IE+VPVIADVQ++ RI++VM+  KPY VYHAAAHKHVP+MEYNP+EA++N
Sbjct  324  QELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRN  383

Query  241  NVIGTKNAAESAQLAEVSKFVMISTDKAVNPPNVMGASKRIAEMIIQNLNTRPGNTDFVA  300
            N++GTKN AESA+ +EVSKFVMISTDKAVNP+NVMGA+KRIAEM+IQ+LN   ++T FVA
Sbjct  384  NILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVA  443

Query  301  VRFGNVLGSRGSVIPLFKEQIAAGGPVTVTHPEMTRYFMTIPEAARLVLQAGALATGGEI  360
            VRFGNVLGSRGSVIPLFK+QI +GGPVTVTHPEMTRYFMTIPEA+RLVLQAGALA GGE+
Sbjct  444  VRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEV  503

Query  361  FVLDMGEPVKIVDLAKNLIRLSGFKEEDIDIEFSGVRPGeklyeellnekeIHPEQVYEK  420
            FVLDMG PVKIVDLAKNLIRLSG KEEDI+IEFSG+RPGEKLYEELLN +EIHP+QVYEK
Sbjct  504  FVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEK  563

Query  421  IYRGKVTSVDTESLNRILDILLNHFTKQQIINIAN  455
            IYRGKV       ++ I++ L+N+F+K+++++IAN
Sbjct  564  IYRGKVDHYIKTEVDLIVEDLINNFSKEKLLKIAN  598

52) M493_17345 in NC_022080


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  518 bits (1953),  Expect = 4e-148, Method: Compositional matrix adjust.
 Identities = 333/597 (56%), Positives = 470/597 (79%), Gaps = 14/597 (2%)

Query  6    RLTFLMVLDSLIVLTAIYVSLFTLHPGIQIWKYKsvllsaltllvsHHFFAFIYRLYQKA  65
            R+ +L+++DS+IV  +++++   L+P ++      ++LS++ LLVSHH+FA+++ LY++A
Sbjct  9    RFLILIIIDSFIVTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRA  68

Query  66   WEYASIGELTAIIKAVTFSIITTAIVQFAVFQDI-YVRALMITWMIHIILIGGSRFVWRV  124
            WEYAS++EL +++KAVT SI+ T ++   ++ +  ++R   ITWM+H++LIGGSR+ WRV
Sbjct  69   WEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRV  128

Query  125  FRDRYIKPNANKRRTLIIGAGSAGMMVARQLVNNPDAELRPIAFIDDDLNKQKLQFFN-I  183
            +R  +I    +K+ TL++GAG +G ++ R+++ + D  ++P+  +DDD NKQK+ + + +
Sbjct  129  YRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERV  188

Query  184  PVVGTTKDIEDVVRALRIEHIIIAIPSLTKKQLNRIFEQCAKTNAKTQIVPKLEDIVTGK  243
             V G   DI ++V+ +RI  IIIAIP+L++K+LN I   C         +P++ED+++G 
Sbjct  189  KVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGE  248

Query  244  VSVSQFRDVQVEDLLGREPVELDIESISSYIENKVILVTGAGGSIGSEICRQVCQFNPKK  303
            + V++++ V+VEDLLGR+PVELD+  IS  + NK ILVTGAGGSIGSEICRQV +F+P+K
Sbjct  249  LEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQK  308

Query  304  IVLLGHGENSIYQIDMELRNQYKDQIDIVPVIGDIQDRERMFEVMEEHKPDVVYHAAAHK  363
            I+LLGHGENSIY I+ EL + Y ++I++VPVI+D+Q++ R++EVM+E KP  VYHAAAHK
Sbjct  309  IILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHK  368

Query  364  HVPLMEYNPKEAVKNNIFGTKNVAEAADTFGVQTFVLISTDKAVNPTNVMGATKRFAEMI  423
            HVPLMEYNP EA++NNI+GTKNVAE+A    V  FV+ISTDKAVNP+NVMGATKR+AEM+
Sbjct  369  HVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMV  428

Query  424  IQQL-DKQSKTKFVAVRFGNVLGSRGSVIPLFKKQIQAGGPVTVTHPDMTRYFMTIPEAS  482
            IQ L + +SKT FVAVRFGNVLGSRGSVIPLFK+QI++GGPVTVTHP+MTRYFMTIPEAS
Sbjct  429  IQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEAS  488

Query  483  RLVIQAGALAKGGEIFVLDMGEPVKIVDLAKNLIKLSGYTVEEIGIEFTGIRPGEKMFEE  542
            RLV+QAGALA+GGE+FVLDMG PVKIVDLAKNLI+LSG   E+IGIEF+GIRPGEK++EE
Sbjct  489  RLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEE  548

Query  543  LLNENEVHPEQVFPKIFIGKA----TAVDEKILHDFMDRFEEMDKEEVRERLLGIAN  595
            LLN NE+HP+QV+ KI+ GK      +  + I++D+++ F        +E+LL IAN
Sbjct  549  LLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFS-------KEKLLKIAN  598

53) BCAH187_A5448 in NC_011658


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  513 bits (1934),  Expect = 1e-146, Method: Compositional matrix adjust.
 Identities = 321/560 (58%), Positives = 448/560 (80%), Gaps = 2/560 (0%)

Query  6    RLSLLILLDSFIVLTAVYLSYWFIHPNILSKIPTTVIISSITLLCSHHIFAAIYKLYNKA  65
            R+ +LI++DSFIV  +V+L+Y +++P + +     +++SS+ LL SHHIFA +++LY++A
Sbjct  9    RFLILIIIDSFIVTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRA  68

Query  66   WEYASIGELKQIFKAITLSIIVTAIVQQIINHDI-YVRILAIAWMLHLLLIGGSRFVWRM  124
            WEYAS++EL  ++KA+T SI+VT ++  ++  +  ++R+  I+WM+HLLLIGGSR+ WR+
Sbjct  69   WEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRV  128

Query  125  FRDTYITKAADKKRTLIIGAGSAGTMVVRQLQHNKEADLYPVAFVDDDRNKQKLEIYN-V  183
            +R  +I +A +KK TL++GAG +G++++R++ ++++  + PV  VDDD+NKQK+ I + V
Sbjct  129  YRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERV  188

Query  184  PVVGTTNHIQEIVENNDIEHIIIAIPSLNRNQINEIFEKCRKTKAKTQIVPMLEDLLDGK  243
             V G  ++I E+V +  I  IIIAIP+L+++++NEI   C         +P +ED+L G 
Sbjct  189  KVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGE  248

Query  244  VSVNEFRDVQVEDLLGREPIQLDDAGIGEKITGKTILVTGAGGSIGSEICRQVMKYKPAK  303
            + VN+++ V+VEDLLGR+P++LD A I+  +T KTILVTGAGGSIGSEICRQV K+ P K
Sbjct  249  LEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQK  308

Query  304  IVLLGHGENSIYNIEMEMRVTYKDSVEITTEIADIQDRHKIFEIMKKHQPYIVYHAAAHK  363
            I+LLGHGENSIY+I+ E+  TY + +E+   IAD+Q++ +I+E+M+  +PY VYHAAAHK
Sbjct  309  IILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHK  368

Query  364  HVPLMERNPEEAVKNNIFGTKNVAEAADTFKVNTFVMVSTDKAVNPTNVMGATKRFAEML  423
            HVPLME NP+EA++NNI+GTKNVAE+A    V+ FVM+STDKAVNP+NVMGATKR+AEM+
Sbjct  369  HVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMV  428

Query  424  VQHLAAVSTNTRFVAVRFGNVLGSRGSVIPLFKKQIQKGGPVTVTHPEMIRYFMTIPEAS  483
            +Q L   +++T FVAVRFGNVLGSRGSVIPLFK+QI+ GGPVTVTHPEM RYFMTIPEAS
Sbjct  429  IQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEAS  488

Query  484  RLVIQAGTLAKGGELFVLDMGDPVKIVDLARNLITLSGYSIEEIGIEFTGLRPGEKMYEE  543
            RLV+QAG+LA+GGE+FVLDMG PVKIVDLA+NLI LSG   E+IGIEF+G+RPGEK+YEE
Sbjct  489  RLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEE  548

Query  544  LLNEGEIHPEQIFPKIHIGK  563
            LLN  EIHP+Q++ KI  GK
Sbjct  549  LLNKNEIHPQQVYEKIYRGK  568

54) BCN_5200 in NC_016771


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  513 bits (1934),  Expect = 1e-146, Method: Compositional matrix adjust.
 Identities = 321/560 (58%), Positives = 448/560 (80%), Gaps = 2/560 (0%)

Query  6    RLSLLILLDSFIVLTAVYLSYWFIHPNILSKIPTTVIISSITLLCSHHIFAAIYKLYNKA  65
            R+ +LI++DSFIV  +V+L+Y +++P + +     +++SS+ LL SHHIFA +++LY++A
Sbjct  9    RFLILIIIDSFIVTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRA  68

Query  66   WEYASIGELKQIFKAITLSIIVTAIVQQIINHDI-YVRILAIAWMLHLLLIGGSRFVWRM  124
            WEYAS++EL  ++KA+T SI+VT ++  ++  +  ++R+  I+WM+HLLLIGGSR+ WR+
Sbjct  69   WEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRV  128

Query  125  FRDTYITKAADKKRTLIIGAGSAGTMVVRQLQHNKEADLYPVAFVDDDRNKQKLEIYN-V  183
            +R  +I +A +KK TL++GAG +G++++R++ ++++  + PV  VDDD+NKQK+ I + V
Sbjct  129  YRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERV  188

Query  184  PVVGTTNHIQEIVENNDIEHIIIAIPSLNRNQINEIFEKCRKTKAKTQIVPMLEDLLDGK  243
             V G  ++I E+V +  I  IIIAIP+L+++++NEI   C         +P +ED+L G 
Sbjct  189  KVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGE  248

Query  244  VSVNEFRDVQVEDLLGREPIQLDDAGIGEKITGKTILVTGAGGSIGSEICRQVMKYKPAK  303
            + VN+++ V+VEDLLGR+P++LD A I+  +T KTILVTGAGGSIGSEICRQV K+ P K
Sbjct  249  LEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQK  308

Query  304  IVLLGHGENSIYNIEMEMRVTYKDSVEITTEIADIQDRHKIFEIMKKHQPYIVYHAAAHK  363
            I+LLGHGENSIY+I+ E+  TY + +E+   IAD+Q++ +I+E+M+  +PY VYHAAAHK
Sbjct  309  IILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHK  368

Query  364  HVPLMERNPEEAVKNNIFGTKNVAEAADTFKVNTFVMVSTDKAVNPTNVMGATKRFAEML  423
            HVPLME NP+EA++NNI+GTKNVAE+A    V+ FVM+STDKAVNP+NVMGATKR+AEM+
Sbjct  369  HVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMV  428

Query  424  VQHLAAVSTNTRFVAVRFGNVLGSRGSVIPLFKKQIQKGGPVTVTHPEMIRYFMTIPEAS  483
            +Q L   +++T FVAVRFGNVLGSRGSVIPLFK+QI+ GGPVTVTHPEM RYFMTIPEAS
Sbjct  429  IQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEAS  488

Query  484  RLVIQAGTLAKGGELFVLDMGDPVKIVDLARNLITLSGYSIEEIGIEFTGLRPGEKMYEE  543
            RLV+QAG+LA+GGE+FVLDMG PVKIVDLA+NLI LSG   E+IGIEF+G+RPGEK+YEE
Sbjct  489  RLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEE  548

Query  544  LLNEGEIHPEQIFPKIHIGK  563
            LLN  EIHP+Q++ KI  GK
Sbjct  549  LLNKNEIHPQQVYEKIYRGK  568

55) BCK_09000 in NC_018491


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  510 bits (1925),  Expect = 6e-146, Method: Compositional matrix adjust.
 Identities = 319/560 (57%), Positives = 446/560 (80%), Gaps = 2/560 (0%)

Query  6    RLSLLILLDSFIVLTAVYLSYWFIHPNILSKIPTTVIISSITLLCSHHIFAAIYKLYNKA  65
            R+ +LI++DSFIV  +V+L+Y +++P + +     +++SS+ LL SHHIFA +++LY++A
Sbjct  9    RFLILIIIDSFIVTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRA  68

Query  66   WEYASIGELKQIFKAITLSIIVTAIVQQIINHDI-YVRILAITWMLHLLLIGGSRFVWRM  124
            WEYAS++EL  ++KA+T SI+VT ++  ++  +  ++R+  ITWM+HLLLIGGSR+ WR+
Sbjct  69   WEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRV  128

Query  125  FRDTYITKATDKKRTLIIGAGSAGTMVVRQLQHNKEADLYPIAFVDDDRNKQKLEIYN-V  183
            +R  +I +A +KK TL++GAG +G++++R++ ++++  + P+  VDDD+NKQK+ I + V
Sbjct  129  YRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERV  188

Query  184  PVVGTTNHIQEIVEDNDIEHIIIAIPSLNRNQINEIFEKCRKTKAKTQIVPMLEDLLDGK  243
             V G  ++I E+V    I  IIIAIP+L+++++NEI   C         +P +ED+L G 
Sbjct  189  KVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGE  248

Query  244  VSVNEFRDVQVEDLLGREPIQLDDAGIGEKIAGKTILVTGAGGSIGSEICRQVMKYKPAK  303
            + VN+++ V+VEDLLGR+P++LD A I+  ++ KTILVTGAGGSIGSEICRQV K+ P K
Sbjct  249  LEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQK  308

Query  304  IVLLGHGENSIYNIEMEMRVTYKDMVEITTEIADIQDRHKIFEIMKKHQPYIVYHAAAHK  363
            I+LLGHGENSIY+I+ E+  TY + +E+   IAD+Q++ +I+E+M+  +PY VYHAAAHK
Sbjct  309  IILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHK  368

Query  364  HVPLMERNPEEAVKNNIFGTKNVAEAADTFKVNTFVMVSTDKAVNPTNVMGATKRFAEML  423
            HVPLME NP+EA++NNI+GTKNVAE+A    V+ FVM+STDKAVNP+NVMGATKR+AEM+
Sbjct  369  HVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMV  428

Query  424  VQHMASVSTSTRFVAVRFGNVLGSRGSVIPLFKKQIQKGGPVTVTHPDMIRYFMTIPEAS  483
            +Q +   ++ T FVAVRFGNVLGSRGSVIPLFK+QI+ GGPVTVTHP+M RYFMTIPEAS
Sbjct  429  IQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEAS  488

Query  484  RLVIQAGTLARGGELFVLDMGDPVKIVDLAKNLITLSGYSIEEIGIEFTGLRPGEKMYEE  543
            RLV+QAG+LA+GGE+FVLDMG PVKIVDLAKNLI LSG   E+IGIEF+G+RPGEK+YEE
Sbjct  489  RLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEE  548

Query  544  LLNEGEIHPKQIFPKIHIGK  563
            LLN  EIHP+Q++ KI  GK
Sbjct  549  LLNKNEIHPQQVYEKIYRGK  568

56) Bsel_3052 in NC_014219


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  510 bits (1925),  Expect = 7e-146, Method: Compositional matrix adjust.
 Identities = 321/587 (55%), Positives = 459/587 (79%), Gaps = 11/587 (1%)

Query  4    RTRLSMLILVDSFIVMASIFVSYWLLMPTMDGLPMAIVVSSIALFIC-HHLFAHIFKLYK  62
            + R+ +LI++DSFIV  S+F++Y +L P   G ++ ++V S  +++  HH+FA +F+LY 
Sbjct  7    KLRFLILIIIDSFIVTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYH  66

Query  63   KVWQYASIQELIAIFKAVSFSVLSIAFLQLMVF-GTMFTRTLLVTAMLHILLIGASRFSW  121
            + W+YAS+ EL++++KAV+ S++   +L  +++  + F R  ++T M+H+LLIG+SR+ W
Sbjct  67   RAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFW  126

Query  122  RLYRDTKLNLDKEKKRTLIIGAGNGGSLVARQLMNSEMSELQPVAFIDDDPQKQRLELMN  181
            R+YR   ++   EKK TL++GAG+GGS++ R+++ S+   +QPV  +DDD +KQ++ + +
Sbjct  127  RVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITE  186

Query  182  -IPVMGTLdeiediviekdvehiviAIPSLCNSDLNKIFTKCSETGVKTQIMPSVEDIMS  240
             + V G +++I ++V    +  I+IAIP+L +  LN I   C+  GV    MP++ED++S
Sbjct  187  RVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLS  246

Query  241  GKVEVSQIRDVQVEDLLGREPVELDTGRIGEKLTGKTVLVTGAGGSIGSEVCRQVARFKP  300
            G +EV++++ V+VEDLLGR+PVELD + I+  LT KT+LVTGAGGSIGSE+CRQV++F P
Sbjct  247  GELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDP  306

Query  301  EKLILLGHGENSIYDIEMELKNTYPDTV-FDPVIADVQDAERMHDVFETSKPDVVYHAAA  359
            +K+ILLGHGENSIY I+ EL +TY + + F PVIADVQ+  R+ +V +  KP  VYHAAA
Sbjct  307  QKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAA  366

Query  360  HKHVPLMERNPHEAVKNNIIGTRNVSMAAHEAGVTNFVMVSTDKAVNPTSVMGGTKRIAE  419
            HKHVPLME NPHEA++NNI+GT+NV+ +A E+ V++FVM+STDKAVNP++VMG+TKRIAE
Sbjct  367  HKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAE  426

Query  420  MIVQHM-DTISDTTFVAVRFGNVLGSRGSVIPLFKKQIEAGGPVTVTDPEMTRYFMTIPE  478
            M++Q + +  S T+FVAVRFGNVLGSRGSVIPLFK+QIE+GGPVTVT+PEMTRYFMTIPE
Sbjct  427  MVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPE  486

Query  479  ASRLVLQAGSIAEGGETFVLDMGEPVRIVDLAKNLIRLSGFSTDEIEIRYSGIRPGEKLF  538
            ASRLVLQAG++A+GGE FVLDMG PV+IVDLAKNLIRLSG   ++I I +SGIRPGEKL+
Sbjct  487  ASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLY  546

Query  539  EELLSKDEVHSEQIYPKIYRGK-----TPPVNIRVIEELIRTFERET  580
            EELL+K+E+H++Q+Y KIYRGK        V++ ++E+LI  F +E 
Sbjct  547  EELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDL-IVEDLINNFSKEK  592

57) BCE_5395 in NC_003909


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  510 bits (1923),  Expect = 9e-146, Method: Compositional matrix adjust.
 Identities = 318/560 (57%), Positives = 446/560 (80%), Gaps = 2/560 (0%)

Query  6    RLSLLILLDSFIVLTAVYLSYWFIHPNILSKIPTTVIISSITLLCSHHIFAAIYKLYNKA  65
            R+ +LI++DSFIV  +V+L+Y +++P + +     +++SS+ LL SHHIFA +++LY++A
Sbjct  9    RFLILIIIDSFIVTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRA  68

Query  66   WEYASIGELKQIFKAITLSIIVTAIVQQIINHDI-YVRILVIAWMLHLLLIGGSRFVWRM  124
            WEYAS++EL  ++KA+T SI+VT ++  ++  +  ++R+  I+WM+HLLLIGGSR+ WR+
Sbjct  69   WEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRV  128

Query  125  FRDTYITKAADKKRTLIIGAGSAGTMVVRQLQHNKEADLYPIAFVDDDRNKQKLEIYN-V  183
            +R  +I +A +KK TL++GAG +G++++R++ ++++  + P+  VDDD+NKQK+ I + V
Sbjct  129  YRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERV  188

Query  184  PVVGTTNHIQEIVEDNDIEHIIIAIPSLNRNQINEIFEKCRKTKAKTQIVPMLEDLLDGK  243
             V G  ++I E+V    I  IIIAIP+L+++++NEI   C         +P +ED+L G 
Sbjct  189  KVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGE  248

Query  244  VSVNEFRDVQVEDLLGREPIQLDDAGIGEKIAGKTILVTGAGGSIGSEICRQVMKYKPAK  303
            + VN+++ V+VEDLLGR+P++LD A I+  ++ KTILVTGAGGSIGSEICRQV K+ P K
Sbjct  249  LEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQK  308

Query  304  IVLLGHGENSIYNIEMEMRVTYKDTVEITTEIADIQDRHKIFEIMKKHQPYIVYHAAAHK  363
            I+LLGHGENSIY+I+ E+  TY + +E+   IAD+Q++ +I+E+M+  +PY VYHAAAHK
Sbjct  309  IILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHK  368

Query  364  HVPLMERNPEEAVKNNIFGTKNVAEAADTFKVNTFVMVSTDKAVNPTNVMGATKRFAEML  423
            HVPLME NP+EA++NNI+GTKNVAE+A    V+ FVM+STDKAVNP+NVMGATKR+AEM+
Sbjct  369  HVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMV  428

Query  424  VQHMASVSTGTRFVAVRFGNVLGSRGSVIPLFKKQIQKGGPVTVTHPDMIRYFMTIPEAS  483
            +Q +   ++ T FVAVRFGNVLGSRGSVIPLFK+QI+ GGPVTVTHP+M RYFMTIPEAS
Sbjct  429  IQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEAS  488

Query  484  RLVIQAGTLARGGELFVLDMGDPVKIVDLAKNLITLSGYSIEEIGIEFTGLRPGEKMYEE  543
            RLV+QAG+LA+GGE+FVLDMG PVKIVDLAKNLI LSG   E+IGIEF+G+RPGEK+YEE
Sbjct  489  RLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEE  548

Query  544  LLNEGEIHPKQIFPKIHIGK  563
            LLN  EIHP+Q++ KI  GK
Sbjct  549  LLNKNEIHPQQVYEKIYRGK  568

58) YBT020_26290 in NC_017200


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  509 bits (1921),  Expect = 1e-145, Method: Compositional matrix adjust.
 Identities = 319/560 (57%), Positives = 447/560 (80%), Gaps = 2/560 (0%)

Query  6    RLSLLILLDSFIVLTAVYLSYWFIHPNLLSKIPNTVIISSITLLCSHHIFAAIYKLYNKA  65
            R+ +LI++DSFIV  +V+L+Y +++P + +   + +++SS+ LL SHHIFA +++LY++A
Sbjct  9    RFLILIIIDSFIVTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRA  68

Query  66   WEYASIGELKQIFKAITLSIIVTAIVQQIINHDI-YVRILAIAWMLHLLLIGGSRFVWRM  124
            WEYAS++EL  ++KA+T SI+VT ++  ++  +  ++R+  I+WM+HLLLIGGSR+ WR+
Sbjct  69   WEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRV  128

Query  125  FRDTYIIKAADKKRTLIIGAGSAGTMVVRQLQHNKEADLYPIAFVDDDRNKQKLEIYN-V  183
            +R  +I +A +KK TL++GAG +G++++R++ ++++  + P+  VDDD+NKQK+ I + V
Sbjct  129  YRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERV  188

Query  184  PVVGTTNHIQEIVEDNDIEHIIIAIPSLNRNQINEIFEKCRKTKAKTQIVPMLEDLLDGK  243
             V G  ++I E+V    I  IIIAIP+L+++++NEI   C         +P +ED+L G 
Sbjct  189  KVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGE  248

Query  244  VSVNEFRDVQVEDLLGREPIQLDDAGIGEKITGKTILVTGAGGSIGSEICRQVMKYRPAK  303
            + VN+++ V+VEDLLGR+P++LD A I+  +T KTILVTGAGGSIGSEICRQV K+ P K
Sbjct  249  LEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQK  308

Query  304  IVLLGHGENSIYNIEMEMRVTYKDIVEITTEIADIQDRHKIFEIMKKHQPYIVYHAAAHK  363
            I+LLGHGENSIY+I+ E+  TY + +E+   IAD+Q++ +I+E+M+  +PY VYHAAAHK
Sbjct  309  IILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHK  368

Query  364  HVPLMERNPEEAVKNNIFGTKNVAEAADTFKVNTFVMVSTDKAVNPTNVMGATKRFAEML  423
            HVPLME NP+EA++NNI+GTKNVAE+A    V+ FVM+STDKAVNP+NVMGATKR+AEM+
Sbjct  369  HVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMV  428

Query  424  VQHMASVSTSTRFVAVRFGNVLGSRGSVIPLFKKQIQKGGPVTVTHPDMIRYFMTIPEAS  483
            +Q +   ++ T FVAVRFGNVLGSRGSVIPLFK+QI+ GGPVTVTHP+M RYFMTIPEAS
Sbjct  429  IQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEAS  488

Query  484  RLVIQAGTLARGGELFVLDMGEPVKIVDLAKNLITLSGYSIEEIGIEFTGLRPGEKMYEE  543
            RLV+QAG+LA+GGE+FVLDMG PVKIVDLAKNLI LSG   E+IGIEF+G+RPGEK+YEE
Sbjct  489  RLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEE  548

Query  544  LLNEGEIHPEQIFPKIHIGK  563
            LLN  EIHP+Q++ KI  GK
Sbjct  549  LLNKNEIHPQQVYEKIYRGK  568

59) B1NLA3E_20955 in NC_021171


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  506 bits (1908),  Expect = 1e-144, Method: Compositional matrix adjust.
 Identities = 316/562 (57%), Positives = 447/562 (80%), Gaps = 3/562 (0%)

Query  4    RTRLTMLAFLDSIIVLTAIYISFLTLHPNLSIFKMPTLMLTAITLLLSHHFFAFVYKLYK  63
            + R+ +L ++DS+IV  ++++++  L+P +  + +  L+L+++ LL+SHH+FA+V++LY 
Sbjct  7    KLRFLILIIIDSFIVTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYH  66

Query  64   KAWEYASVGEVISIVKAVTFSIGTTLIMQLLVFHDA-YVRALMIAWMLHVILIGGSRFSW  122
            +AWEYASV+E++S++KAVT SI  TL++  L++ ++ ++R   I+WM+H++LIGGSR+ W
Sbjct  67   RAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFW  126

Query  123  RVVRDRYISTQTQMKRTLIIGAGAAGTMVARQVLNNHDTELKPVAFIDDDPKKYRLDILG  182
            RV R  +I    + K TL++GAG +G+++ R++L ++D  ++PV  +DDD +K ++ I  
Sbjct  127  RVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITE  186

Query  183  -LPVVGNVNHITKTVETLQIDNIVIAIPSLSRKELKRIYDECAKTKAKTKIMPMLEDIML  241
             + V G V++I   V  ++I +I+IAIP+LS+K L+ I   C         MP +ED++ 
Sbjct  187  RVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLS  246

Query  242  GKVSVNHFRDVQVEDLLGREPVDLDIAGISEYVSGKTVLVTGAGGSIGSEICRQICKFSP  301
            G + VN+++ V+VEDLLGR+PV+LD+A IS  ++ KT+LVTGAGGSIGSEICRQ+ KF P
Sbjct  247  GELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDP  306

Query  302  RKIVLVGHGENSIYGIDMELRNAVPPSIEIVPVIGDIQDRERIFEVMEIHRPSVVYHAAA  361
            +KI+L+GHGENSIY+I+ EL ++    IE+VPVI+D+Q++ RI+EVM+  +P  VYHAAA
Sbjct  307  QKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAA  366

Query  362  HKHVPLMEYNPMEAVKNNVFGTKNVAEAAHSFGVDTFVMISSDKAVNPTNVMGSTKRIAE  421
            HKHVPLMEYNP EA++NN++GTKNVAE+A    V  FVMIS+DKAVNP+NVMG+TKRIAE
Sbjct  367  HKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAE  426

Query  422  MIIQKLDKE-SKTRFVAVRFGNVLGSRGSVIPLFKKQIQAGGPVTVTHEDMTRYFMTIPE  480
            M+IQ L+ + SKT FVAVRFGNVLGSRGSVIPLFK+QI++GGPVTVTH +MTRYFMTIPE
Sbjct  427  MVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPE  486

Query  481  ASRLVIQAGSLARGGEIFVLDMGEPVKIVDLARNLITLSGYSEDEIGIGFSGLRPGEKMY  540
            ASRLV+QAG+LA+GGE+FVLDMG PVKIVDLA+NLI LSG  E++IGI FSG+RPGEK+Y
Sbjct  487  ASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLY  546

Query  541  EELLNAEEIYPEPVFPKIFIGR  562
            EELLN +EI P+ V+ KI+ G+
Sbjct  547  EELLNKNEIHPQQVYEKIYRGK  568

60) BCO26_0342 in NC_015634


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  504 bits (1901),  Expect = 5e-144, Method: Compositional matrix adjust.
 Identities = 340/590 (58%), Positives = 462/590 (79%), Gaps = 6/590 (1%)

Query  9    ILMLLDSAIVLCAVFAGYFILNPYMNVYTQPMLWVSSLTLLISYHFFAFRYRLYQKAWEY  68
            IL+++DS IV  +VF GY IL+PY + Y+  +L +SS+ LL+S H+FA+ + LY++AWEY
Sbjct  12   ILIIIDSFIVTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEY  71

Query  69   ASIGELtai-ikavtfaavitavvqfiavHNIYLRVLAITWMIHILLIGSSRFSWRVYRD  127
            AS++EL ++     +   V   +V ++  ++ +LR+  ITWM+H+LLIG+SR+ WRVYR 
Sbjct  72   ASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRR  131

Query  128  RFMASKVQKKRTLIIGAGSAGTMVAHQLLKSKDADLEPVAFIDDDPNKWKLEIYG-VPVV  186
             F+ + V+KK TL++GAG +G+++ +++L+S+D  ++PV  +DDD NK K+ I   V V 
Sbjct  132  YFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQ  191

Query  187  GMVSEIPWAVEQYNIDHIVIAIPSLKRVGMQRIYEECAKTKAKTKVLPMLEDLITGKVSV  246
            G V +IP  V ++ I  I+IAIP+L +  ++ I   C         +P +ED+++G + V
Sbjct  192  GYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEV  251

Query  247  NQIRDVQVEDLLGREPIELDMTMISEKLTGKTVLVTGAGGSIGSEICRQVAQFLPKKLLL  306
            N+++ V+VEDLLGR+P+ELDM++IS  LT KT+LVTGAGGSIGSEICRQV++F P+K++L
Sbjct  252  NNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIIL  311

Query  307  LGHGENSIYTIDMELRNKYDNDIEIVPLIADVQDRVRIFDIMNEYKPDVVYHAAAHKHVP  366
            LGHGENSIY+I+ EL + Y+N IE+VP+IADVQ++ RI+++MNE+KP  VYHAAAHKHVP
Sbjct  312  LGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVP  371

Query  367  LMEYNPTEAVKNNIFGTRNVAEAADTFGVKSFVMISTDKAVNPPNVMGATKRFAEMIIQN  426
            LMEYNP EA++NNI+GT+NVAE+A    V  FVMISTDKAVNP+NVMGATKR+AEM+IQ+
Sbjct  372  LMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQS  431

Query  427  LAKE-SKTNFVAVRFGNVLGSRGSVIPLFKKQIQAGGPVTVTHPDMTRYFMTIPEASRLV  485
            L  + SKT+FVAVRFGNVLGSRGSVIPLFK+QI++GGPVTVTHP+MTRYFMTIPEASRLV
Sbjct  432  LNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLV  491

Query  486  IQAGALARGGEVFVLDMGEPVKIVDLAKNLITLSGFSIDEIGIKFTGKRPGEKLYeelln  545
            +QAGALA+GGEVFVLDMG PVKIVDLAKNLI LSG   ++IGI F+G RPGEKLYEELLN
Sbjct  492  LQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLN  551

Query  546  eneVQKKSIYPKIHVGKASPMNKEDLYHVIDSLLNKDSQELKEILIKIAN  595
             NE++ + +Y KI  GK     K ++  +++ L+N+ S   KE L+KIAN
Sbjct  552  KNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFS---KEKLLKIAN  598

61) BcerKBAB4_5070 in NC_010184


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  503 bits (1897),  Expect = 1e-143, Method: Compositional matrix adjust.
 Identities = 326/597 (55%), Positives = 463/597 (78%), Gaps = 13/597 (2%)

Query  15   RLSLLVLLDSFIVLTAVYLSYWLIHPNVLSKIPTTVIISSITLLCSHHIFASIYKLYNKA  74
            R+ +L+++DSFIV  +V+L+Y +++P   +     +++SS+ LL SHHIFA +++LY++A
Sbjct  9    RFLILIIIDSFIVTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRA  68

Query  75   WEYASIGELKQIFKAITFSIMVTAIVQQIINHDI-YVRILVIVWMLHLLLIGGSRFVWRM  133
            WEYAS++EL  ++KA+T SI+VT ++  ++  +  ++R+  I WM+HLLLIGGSR+ WR+
Sbjct  69   WEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRV  128

Query  134  FRDTYITKDTNKKRTIIIGAGSAGTMVVRQLQHNKEADLFPIAFVDDDKNKQKLEIYN-V  192
            +R  +I +  +KK T+++GAG +G++++R++ ++++  + P+  VDDDKNKQK+ I + V
Sbjct  129  YRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERV  188

Query  193  PVVGMTDNIKEIVEDNDIEHIIIAIPSLNRKQINGIFEKCRKTKAKTQIVPMLEDLLDGK  252
             V G  ++I E+V    I  IIIAIP+L++K++N I   C         +P +ED+L G 
Sbjct  189  KVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGE  248

Query  253  VSVNEVRDVQVEDLLGREPIQLddagiggkiagkTILVTGAGGSIGSEICRQVMKYKPAK  312
            + VN+++ V+VEDLLGR+P++LD A I+  ++ KTILVTGAGGSIGSEICRQV K+ P K
Sbjct  249  LEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQK  308

Query  313  IVLLGHGENSIYNIEMEMRVTYKDAVEITTEIADVQDRNKIFEIMEKHRPYIVYHAAAHK  372
            I+LLGHGENSIY+I+ E+  TY + +E+   IADVQ++ +I+E+M+  +PY VYHAAAHK
Sbjct  309  IILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHK  368

Query  373  HVPLMERNPEEAVKNNIFGTKNVAEASDTFKVNTFVMVSTDKAVNPTNVMGATKRFAEML  432
            HVPLME NP+EA++NNI+GTKNVAE++    V+ FVM+STDKAVNP+NVMGATKR+AEM+
Sbjct  369  HVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMV  428

Query  433  VQHMAAVSNNTSFVAVRFGNVLGSRGSVIPLFKKQIQKGGPVTVTHPDMIRYFMTIPEAS  492
            +Q +   +++TSFVAVRFGNVLGSRGSVIPLFK+QI+ GGPVTVTHP+M RYFMTIPEAS
Sbjct  429  IQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEAS  488

Query  493  RLVIQAGTLAKGGELFVLDMGDPVKIVDLAKNLIILSGYSIEEVGIEFTGLRPGEKMYEE  552
            RLV+QAG+LA+GGE+FVLDMG PVKIVDLAKNLI LSG   E++GIEF+G+RPGEK+YEE
Sbjct  489  RLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEE  548

Query  553  LLNEGEIHPEQIFPKIHIGKA---VLMDQE-ILRQFMNDFEKMSKEDIRERLLEIAN  605
            LLN  EIHP+Q++ KI  GK    +  + + I+ +++N+F K       E+LL IAN
Sbjct  549  LLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSK-------EKLLKIAN  598

62) BC5274 in NC_004722


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  500 bits (1886),  Expect = 8e-143, Method: Compositional matrix adjust.
 Identities = 316/556 (57%), Positives = 440/556 (80%), Gaps = 3/556 (0%)

Query  1    MILLDSFIVLTAVYLSYWFIHPNVLNKIPMTVVISSITLLCSHHVFAAIYKLYNKAWEYA  60
            +I++DSFIV  +V+L+Y +++P         +V+SS+ LL SHH+FA +++LY++AWEYA
Sbjct  13   LIIIDSFIVTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEYA  72

Query  61   SIGELKQIFKAITLSILVTAIVQQIINHDI-YVRILAIAWMLHLLLIGGSRFVWRMFRDT  119
            S++EL  ++KA+T SI+VT ++  ++  +  ++R+  I+WM+HLLLIGGSR+ WR++R  
Sbjct  73   SVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRRY  132

Query  120  YITKATDKKRTLIIGAGSAGTMVVRQLQHNKEADLYPIAFVDDDRNKQKLEIYN-VPVIG  178
            +I +A +KK TL++GAG +G++++R++ ++++  + P+  VDDD+NKQK+ I + V V G
Sbjct  133  FIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQG  192

Query  179  TTNHIQEIVEDNDIEHIIIAIPSLNRGQINEIFEKCRKTKAKTQIVPMLEDLLDGKVSVN  238
              ++I E+V    I  IIIAIP+L++ ++NEI   C         +P +ED+L G + VN
Sbjct  193  YVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVN  252

Query  239  EFRDVQVEDLLGREPVQLDDKGIGEKIQDKTVLITGAGGSIGSEICRQILKYKPAKMVLL  298
            +++ V+VEDLLGR+PV+LD   I+  + +KT+L+TGAGGSIGSEICRQ+ K+ P K++LL
Sbjct  253  NLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILL  312

Query  299  GHGENSIYHIEMELRTKYKEQAEFVTEIADIQDRNKIFEIMKKHKPFVVYHAAAHKHVPL  358
            GHGENSIY I+ EL   Y ++ EFV  IAD+Q++ +I+E+M+  KP+ VYHAAAHKHVPL
Sbjct  313  GHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPL  372

Query  359  MERNPEEAVKNNIIGTKNVAEAADTFGINTFVMVSTDKAVNPTNVMGATKRVAEMVVQHM  418
            ME NP+EA++NNI+GTKNVAE+A    ++ FVM+STDKAVNP+NVMGATKR+AEMV+Q +
Sbjct  373  MEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSL  432

Query  419  AM-ISQTRFVAVRFGNVLGSRGSVIPLFKKQIQSGGPVTVTHPDITRYFMTIPEASRLVI  477
                S+T FVAVRFGNVLGSRGSVIPLFK+QI+SGGPVTVTHP++TRYFMTIPEASRLV+
Sbjct  433  NEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVL  492

Query  478  QAGSLARGGELFVLDMGEPVKIADLAKNLIQLSGYSIEEIGIEYSGLRPGEKMYEELLND  537
            QAG+LA+GGE+FVLDMG PVKI DLAKNLI+LSG   E+IGIE+SG+RPGEK+YEELLN 
Sbjct  493  QAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNK  552

Query  538  NEIHKEQVFPKIHIGK  553
            NEIH +QV+ KI  GK
Sbjct  553  NEIHPQQVYEKIYRGK  568

63) AXY_20090 in NC_018704


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  479 bits (1804),  Expect = 2e-136, Method: Compositional matrix adjust.
 Identities = 298/538 (56%), Positives = 426/538 (80%), Gaps = 8/538 (1%)

Query  52   HFIYALIFKLYHKIWAYASVKELKAIIYSVTLANLSTAVFQYFINDFKIYRRAMLVTWLI  111
            H I+A +F+LYH+ W YASV EL +++ +VT + + T ++  ++     + R  ++TW++
Sbjct  55   HHIFAYVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMM  114

Query  112  HLTVIGGSRFIWRVFRDHYINPNPNRKRTLiigagdagamiaRQLTNGQTDVDLNPIGFV  171
            HL +IGGSR++WRV+R  +I+   ++K TL++GAG++G+++ R++  +Q D+ ++P+  V
Sbjct  115  HLLLIGGSRLFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQ-DMRMQPVLAV  173

Query  172  DDDPMKQKMHVFN-LPVLGTTEEIEAIVEAKQIEHIIIAIPSIRNGELKAIINRCNNTAK  230
            DDD  KQKM + + + V G  E+I  +V   +I  IIIAIP++ +  L+ I + CN  + 
Sbjct  174  DDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGV  233

Query  231  KVQILPKLEDLATGRVSVKMLRNIDVEDVLGRPPVELDIDAISTYVTDNTVMVTGAGGSI  290
             +  +P++ED+ +G + V+ L++++VED+LGR PVELD+  IS  +T++T++VTGAGGSI
Sbjct  234  ELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSI  293

Query  291  GSEICRQLMRFNPSRILLVGHGEFSIYTIEKELQKTYGHTTTEIIPLIADVQDRDRIFNI  350
            GSEICRQ+ +F+P +I+L+GHGE SIY+I++EL KTYG+   E++P+IADVQ++ RI+++
Sbjct  294  GSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGN-RIEFVPVIADVQNKTRILEV  352

Query  351  VKQYQPWIIYHAAAHKHVPLMEYNPHEAIKNNVIGTKNVAEAADVFNVHTFVLVSTDKAV  410
            +++++P  +YHAAAHKHVPLMEYNPHEAI+NN++GTKNVAE+A   +V  FV++STDKAV
Sbjct  353  MNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAV  412

Query  411  NPTNVMGGTKRIAEMIIQDLA-TRSKTKFVAVRFGNVLGSRGSVIPLFKEQIAEGGPVTV  469
            NP+NVMG+TKRIAEM+IQ L    SKT FVAVRFGNVLGSRGSVIPLFK+QI  GGPVTV
Sbjct  413  NPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTV  472

Query  470  THPEMTRYFMTIPEATRLVIQAGTLANGGEIFVLDMGEPVKIVDLAKNMINLSGYSTDDI  529
            THPEMTRYFMTIPEA+RLV+QAG+LA+GGE+FVLDMG PVKIVDLAKN+I LSG   +DI
Sbjct  473  THPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDI  532

Query  530  EIKFTGIRPGEKMYEELLNKDEIHPREVYEKIYIGKTDQ---VDINPVLQ-LIDTFEQ  583
             I F+GIRPGEK+YEELLNK+EIHP++VYEKIY GK D+    +++ +++ LI+ F +
Sbjct  533  GIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSK  590

64) BH3718 in NC_002570


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  470 bits (1771),  Expect = 1e-133, Method: Compositional matrix adjust.
 Identities = 314/551 (57%), Positives = 429/551 (78%), Gaps = 15/551 (2%)

Query  50   HHFFAQKLKLYKRVWQYASMNELKAIIMAVTFSIVTVAIVQLLFF-QTVYVRTLFTTWMM  108
            HH+FA  ++LY R W+YAS++EL +++ AVT SIV   ++  L++ ++ ++R  F TWMM
Sbjct  55   HHIFAYVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMM  114

Query  109  HMLLIGGSRFSWRLYRDTYMKPKLNKTKTLIIGAGSAGSMVARQLLQNQEAELRPVAFVD  168
            H+LLIGGSR+ WR+YR  ++   ++K  TL++GAG +GS++ R++L++Q+  ++PV  VD
Sbjct  115  HLLLIGGSRLFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVD  174

Query  169  DDISKHNLEIMG-IPVLGAVKDMEGivaehsiehiiiaiPSLSRVELNDIFHVCSKTKIK  227
            DD +K+++ I   + V G V D+  +V    I  IIIAIP+LS+  LN+I  +C+   + 
Sbjct  175  DDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVE  234

Query  228  TQILPKIEDIMMGRVEVAQFRDVEVEDLLGRDPVELDINGIAQYITNRTVLVTGAGGSIG  287
               +P+IED++ G +EV +++ VEVEDLLGRDPVELD+  I++ +TN+T+LVTGAGGSIG
Sbjct  235  LFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIG  294

Query  288  SEICRQIACFQPETLVLLGHGENSIYSIEMELRDKLPN-INIVTEIADIQDREKMFSIMD  346
            SEICRQ++ F+P+ ++LLGHGENSIYSI+ EL     N I++V  IAD+Q++ +++ +M+
Sbjct  295  SEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMN  354

Query  347  DRKPhvvfhaaahkhvPLMERNPEEAVKNNVLGTKNTAEAASAANVNTFVMISTDKAVNP  406
            + KP  V+HAAAHKHVPLME NP+EA++NN+LGTKN AE+A  ++V+ FVMISTDKAVNP
Sbjct  355  EFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNP  414

Query  407  TSVMGATKRIAEMIIQHM-DMISDTRFVAVRFGNVLGSRGSVIPLFKKQIQKGGPVTVTD  465
            ++VMGATKRIAEM+IQ + +  S T FVAVRFGNVLGSRGSVIPLFK+QI+ GGPVTVT+
Sbjct  415  SNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTH  474

Query  466  PEMVRYFMTIPEASRLVLQAGALADGGEVFVLDMGEPVKIVDLARNLIRLSGYTEDEIPI  525
            PEM RYFMTIPEASRLVLQAGALA+GGEVFVLDMG PVKIVDLA+NLIRLSG  E++I I
Sbjct  475  PEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGI  534

Query  526  VFTGMRPGEKLFEELLGENEVHSEQVYPKIYRGKTPP---VEINVIYQ-LTDEFAKKEKD  581
             F+G+RPGEKL+EELL  NE+H++QVY KIYRGK       E+++I + L ++F+K    
Sbjct  535  EFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSK----  590

Query  582  ALREELLDIAN  592
               E LL IAN
Sbjct  591  ---EKLLKIAN  598

65) epsC in NC_021362


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  470 bits (1771),  Expect = 9e-134, Method: Compositional matrix adjust.
 Identities = 299/581 (52%), Positives = 441/581 (76%), Gaps = 9/581 (1%)

Query  6    RLSIITALDSYLVLLSIFIGYQLISPSYDLYPSEMLLMTSLILLGAQHLFAHCFHLYKKV  65
            R+ I+  +DS++V +S+F+GY ++ P +  Y+ ++L+++S+ILL ++H+FA  F+LY + 
Sbjct  9    RFLILIIIDSFIVTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRA  68

Query  66   WEYASIGELYVLLKSITLSHLVTAVLELFFFQNVP-VRLLCLSWLFQLILIGGSRMMWRI  124
            WEYAS++EL  +LK++T S +VT +L  +++ + P +RL  ++W+ +L+LIGGSR+ WR+
Sbjct  69   WEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRV  128

Query  125  IREQVNKESKGSLKALIIGAGSAGSLIAKQLVQKPELNIKPVAFIDDDKTKYRLEIMG-L  183
             R     ++     +L++GAG +GS++ +++++  ++ ++PV  +DDDK K ++ I   +
Sbjct  129  YRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERV  188

Query  184  PVLGGKEQIMQAVRQWNIDRIIIAIPSLSVTQMQDMYKACAQTGIKTQIMPKIDEILLGR  243
             V G  E+I + V++  I +IIIAIP+LS  +++++ K C   G+    MP+I+++L G 
Sbjct  189  KVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGE  248

Query  244  HPVGQLRDVKAEDLLGREPVQLDTSEISNTVKDRVVLVTGAGGSIGSEICRQISKFKPKS  303
              V +L+ V  EDLLGR+PV+LD + IS  + ++ +LVTGAGGSIGSEICRQ+SKF P+ 
Sbjct  249  LEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQK  308

Query  304  IVLVGHGENSIHSILLELEEKFGKHVAYYPEIADIQDREKMFLLMERYKPNVIYHAAAHK  363
            I+L+GHGENSI SI  EL   +G+++ + P IAD+Q++ +++ +M+ +KP  +YHAAAHK
Sbjct  309  IILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHK  368

Query  364  HVPLMEKCPKEAVKNNILGTKNVAEAADETGVETFVLISSDKAVNPANIMGATKRFAEML  423
            HVPLME  P EA++NNILGTKNVAE+A E  V  FV+IS+DKAVNP+N+MGATKR+AEM+
Sbjct  369  HVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMV  428

Query  424  IMNLG-KTSKTKFVAVRFGNVLGSRGSVIPIFKKQIAKGGPVTVTHQDMTRYFMTIPEAS  482
            I +L    SKT FVAVRFGNVLGSRGSVIP+FK+QI  GGPVTVTH +MTRYFMTIPEAS
Sbjct  429  IQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEAS  488

Query  483  RLVIQAGALAKGRQIFVLDMGEPVKIVDLAKNLIQLSGYTTDQIKIEFTGIRPGEKMYEE  542
            RLV+QAGALA+G ++FVLDMG PVKIVDLAKNLI+LSG   ++I IEF+GIRPGEK+YEE
Sbjct  489  RLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEE  548

Query  543  LLNQNEVLAEQVFPKIHIGKA-----VDVELTVLKTFMEEF  578
            LLN+NE+ ++QV+ KI  GK       +V+L ++  ++++F
Sbjct  549  LLNKNEIHPQQVYEKIYRGKVDHYIKTEVDL-IVEDLINNF  588

66) cpsD in NC_013791


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  466 bits (1758),  Expect = 1e-132, Method: Compositional matrix adjust.
 Identities = 301/539 (56%), Positives = 421/539 (79%), Gaps = 5/539 (0%)

Query  51   HHAFAHIYKLYKRVWQYASMNELYGIFMVVNFSIALTAVAQLIMIQDV-YYRTLAITWMM  109
            HH FA +++LY R W+YAS++EL +++  V  SI +T +   ++I +  + R   ITWMM
Sbjct  55   HHIFAYVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMM  114

Query  110  HILLIGGSRFSWRMYRDTYLKPKLGGKRTLIVGAGNAGTMVARQLRNSEDTELDPIGFVD  169
            H+LLIGGSR+ WR+YR  ++   +  K TL+VGAG++G+++ R++  S+D  ++P+  VD
Sbjct  115  HLLLIGGSRLFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVD  174

Query  170  DDNYKQHLEIMN-LPVLGEIKNIPTLVEELHVEHIIIAIPSLNRQELNEIFAVCTQTKVK  228
            DD+ KQ + I + + V G + +IP LV  +++  IIIAIP+L+++ LNEI  +C    V 
Sbjct  175  DDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVE  234

Query  229  TQILPKMEDLITGNVEVNQFRDVEVEDLLGRDPVELDIEGIADYITNKTVLVTGAGGSIG  288
               +P++ED+++G++EVN+++ VEVEDLLGRDPVELD+  I+  +TNKT+LVTGAGGSIG
Sbjct  235  LFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIG  294

Query  289  SEICRQIARFSPEELVLLGHGENSIYAIEMELRRNLPD-LNIKTEIADIQDREKIFSIMA  347
            SEICRQ+++F P+ ++LLGHGENSIY+I+ EL +   + +++   IAD+Q++ +I+ +M 
Sbjct  295  SEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMN  354

Query  348  ARTPhvvfhaaahkhvPLMERNPEEAVKNNVLGTKNVAEAASAAHVNTFVMISTDKAVNP  407
               P  V+HAAAHKHVPLME NP+EA++NN+LGTKNVAE+A  ++V+ FVMISTDKAVNP
Sbjct  355  EFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNP  414

Query  408  TSVMGSTKRIAEMIVQHM-DMISDTRFVAVRFGNVLGSRGSVIPLFKDQIKNGGPVTVTD  466
            ++VMG+TKRIAEM++Q + +  S T FVAVRFGNVLGSRGSVIPLFK+QI +GGPVTVT+
Sbjct  415  SNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTH  474

Query  467  PEMVRYFMTIPEASRLVLQAGSLAKGGEVFVLDMGEPVKIVDLARNLIRLSGYTEEEIPI  526
            PEM RYFMTIPEASRLVLQAG+LA+GGEVFVLDMG PVKIVDLA+NLIRLSG  EE+I I
Sbjct  475  PEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGI  534

Query  527  VFTGMRPGEKMFEELLSKDEVHDEQVYPKIYRGKT-PVVDINVTYELAKTYDEYTKEQL  584
             F+G+RPGEK++EELL+K+E+H +QVY KIYRGK    +  +V   +    ++++KE+L
Sbjct  535  EFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKL  593

67) yveM in NC_006270


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  456 bits (1719),  Expect = 1e-129, Method: Compositional matrix adjust.
 Identities = 301/560 (54%), Positives = 430/560 (77%), Gaps = 3/560 (0%)

Query  6    RLSIITALDSYLVLLSIFIGYQLILPSYDLYPSEMLLMTSLILLGAQHLFAHCFHLYKKV  65
            R+ I+  +DS++V +S+F+GY ++ P +  Y+ ++L+++S+ILL ++H+FA  F+LY + 
Sbjct  9    RFLILIIIDSFIVTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRA  68

Query  66   WEYASIGELYVLLKSITLSHLVTAALELFFFQNVP-VRLLCLSWLFQLILIGGSRMMWRI  124
            WEYAS++EL  +LK++T S +VT  L  +++ + P +RL  ++W+ +L+LIGGSR+ WR+
Sbjct  69   WEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRV  128

Query  125  IREQVNKESKGSLRALIIGAGSAGSLIAKQLVQKPELNIKPVAFIDDDKTKYRLEIMG-L  183
             R     ++     +L++GAG +GS++ +++++  ++ ++PV  +DDDK K ++ I   +
Sbjct  129  YRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERV  188

Query  184  PVLGGKEQIMQAVRQWNIDRIIIAIPSLSVTQMQEMYKACAQTGVKTQIMPKIDEILLGR  243
             V G  E+I + V++  I +IIIAIP+LS  +++E+ K C   GV    MP+I+++L G 
Sbjct  189  KVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGE  248

Query  244  HPVGQLRDVKAEDLLGREPVQLDTSEISNTVKDRVVLVTGAGGSIGSEICRQISKFKPKS  303
              V +L+ V  EDLLGR+PV+LD + IS  + ++ +LVTGAGGSIGSEICRQ+SKF P+ 
Sbjct  249  LEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQK  308

Query  304  IILVGHGENSIHSILLELKEKFGKHVAYYPEIADIQDREKMFLLMERYKPNVIYHAAAHK  363
            IIL+GHGENSI SI  EL   +G+++ + P IAD+Q++ +++ +M+ +KP  +YHAAAHK
Sbjct  309  IILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHK  368

Query  364  HVPLMEKCPKEAVKNNILGTKNvaeaadetevetFVLISSDKAVNPANIMGATKRFAEML  423
            HVPLME  P EA++NNILGTKNVAE+A E EV  FV+IS+DKAVNP+N+MGATKR+AEM+
Sbjct  369  HVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMV  428

Query  424  IMNLG-KTSKTKFVAVRFGNVLGSRGSVIPIFKKQIAKGGPVTVTHQDMTRYFMTIPEAS  482
            I +L    SKT FVAVRFGNVLGSRGSVIP+FK+QI  GGPVTVTH +MTRYFMTIPEAS
Sbjct  429  IQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEAS  488

Query  483  RLVIQAGALAKGRQIFVLDMGEPVKIVDLAKNLIQLSGYTTEQIKIEFTGIRPGEKMYEE  542
            RLV+QAGALA+G ++FVLDMG PVKIVDLAKNLI+LSG   E+I IEF+GIRPGEK+YEE
Sbjct  489  RLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEE  548

Query  543  LLNQNEVLAEQVFPKIHIGK  562
            LLN+NE+ ++QV+ KI  GK
Sbjct  549  LLNKNEIHPQQVYEKIYRGK  568

68) epsC in NC_006322


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  456 bits (1719),  Expect = 1e-129, Method: Compositional matrix adjust.
 Identities = 301/560 (54%), Positives = 430/560 (77%), Gaps = 3/560 (0%)

Query  6    RLSIITALDSYLVLLSIFIGYQLILPSYDLYPSEMLLMTSLILLGAQHLFAHCFHLYKKV  65
            R+ I+  +DS++V +S+F+GY ++ P +  Y+ ++L+++S+ILL ++H+FA  F+LY + 
Sbjct  9    RFLILIIIDSFIVTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRA  68

Query  66   WEYASIGELYVLLKSITLSHLVTAALELFFFQNVP-VRLLCLSWLFQLILIGGSRMMWRI  124
            WEYAS++EL  +LK++T S +VT  L  +++ + P +RL  ++W+ +L+LIGGSR+ WR+
Sbjct  69   WEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRV  128

Query  125  IREQVNKESKGSLRALIIGAGSAGSLIAKQLVQKPELNIKPVAFIDDDKTKYRLEIMG-L  183
             R     ++     +L++GAG +GS++ +++++  ++ ++PV  +DDDK K ++ I   +
Sbjct  129  YRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERV  188

Query  184  PVLGGKEQIMQAVRQWNIDRIIIAIPSLSVTQMQEMYKACAQTGVKTQIMPKIDEILLGR  243
             V G  E+I + V++  I +IIIAIP+LS  +++E+ K C   GV    MP+I+++L G 
Sbjct  189  KVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGE  248

Query  244  HPVGQLRDVKAEDLLGREPVQLDTSEISNTVKDRVVLVTGAGGSIGSEICRQISKFKPKS  303
              V +L+ V  EDLLGR+PV+LD + IS  + ++ +LVTGAGGSIGSEICRQ+SKF P+ 
Sbjct  249  LEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQK  308

Query  304  IILVGHGENSIHSILLELKEKFGKHVAYYPEIADIQDREKMFLLMERYKPNVIYHAAAHK  363
            IIL+GHGENSI SI  EL   +G+++ + P IAD+Q++ +++ +M+ +KP  +YHAAAHK
Sbjct  309  IILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHK  368

Query  364  HVPLMEKCPKEAVKNNILGTKNvaeaadetevetFVLISSDKAVNPANIMGATKRFAEML  423
            HVPLME  P EA++NNILGTKNVAE+A E EV  FV+IS+DKAVNP+N+MGATKR+AEM+
Sbjct  369  HVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMV  428

Query  424  IMNLG-KTSKTKFVAVRFGNVLGSRGSVIPIFKKQIAKGGPVTVTHQDMTRYFMTIPEAS  482
            I +L    SKT FVAVRFGNVLGSRGSVIP+FK+QI  GGPVTVTH +MTRYFMTIPEAS
Sbjct  429  IQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEAS  488

Query  483  RLVIQAGALAKGRQIFVLDMGEPVKIVDLAKNLIQLSGYTTEQIKIEFTGIRPGEKMYEE  542
            RLV+QAGALA+G ++FVLDMG PVKIVDLAKNLI+LSG   E+I IEF+GIRPGEK+YEE
Sbjct  489  RLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEE  548

Query  543  LLNQNEVLAEQVFPKIHIGK  562
            LLN+NE+ ++QV+ KI  GK
Sbjct  549  LLNKNEIHPQQVYEKIYRGK  568

69) BcerKBAB4_3403 in NC_010184


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  455 bits (1713),  Expect = 4e-129, Method: Compositional matrix adjust.
 Identities = 317/601 (53%), Positives = 464/601 (78%), Gaps = 20/601 (3%)

Query  6    RISLLLLMDSMIVLSAIFFSYFFVNASFsv-itlssiissitllvshhlFALIYKLYNKA  64
            R+ +L+++DS IV  ++F++Y ++++ F        ++SS+ LLVSHH+FA +++LY++A
Sbjct  9    RFLILIIIDSFIVTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRA  68

Query  65   WEYASIGELLIICKVVTFSIIATAVVQQLIM-PKMYFRLLVVTWMIHILLIGGSRFIWRM  123
            WEYAS++EL+ + K VT SI+ T ++  L++    ++RL  +TWM+H+LLIGGSR++WR+
Sbjct  69   WEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRV  128

Query  124  YRDIYYVKKG-DKKRTLIVGAGSAGTMVARQLLKNSAAELMPVAFIDDNAKKHNLDIWG-  181
            YR  Y++ ++ +KK TL+VGAG +G+++ R++L++    + PV  +DD+ +K+++ I   
Sbjct  129  YRR-YFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITER  187

Query  182  IPVIGGMNQIEYTVKKLNIEIIILAIPSLNKREQNVILKRCLKTEVKTQILPMLEDLVTG  241
            + V G +++I   VKK+ I  II+AIP+L+++  N I K C    V    +P +ED+++G
Sbjct  188  VKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSG  247

Query  242  KVSVNEFRDVQVEDLLGRDPVELDVDIISDYITDKVILVTGAGGSIGSEICRQIAKFRPK  301
             + VN+++ V+VEDLLGRDPVELD+ +IS  +T+K ILVTGAGGSIGSEICRQ++KF P+
Sbjct  248  ELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQ  307

Query  302  KLILLGHGENSIYSIEMELNRKYGDMKGTFIPEIADIQDEKKMQLIMSKHLPNVVYHAAA  361
            K+ILLGHGENSIYSI+ EL++ YG+ +  F+P IAD+Q+  ++  +M+   P  VYHAAA
Sbjct  308  KIILLGHGENSIYSIHQELSKTYGN-RIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAA  366

Query  362  HKHVPLMENNPEEAVKNNLIGTMNVSEAARAHGVGTFVMISSDKAVNPTSVMGATKKLAE  421
            HKHVPLME NP+EA++NN++GT NV+E+A+   V+ FVMIS+DKAVNP++VMGATK++AE
Sbjct  367  HKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAE  426

Query  422  MVIQH-KDKISHTKFVTVRFGNVLGSRGSVIPLFKKQIQNGGPVTVTHPDMVRYFMTIPE  480
            MVIQ  ++  S T FV+VRFGNVLGSRGSVIPLFK+QI++GGPVTVTHP+M RYFMTIPE
Sbjct  427  MVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPE  486

Query  481  ASRLVVQAGALAKGGEIFVLDMGEPVKIVDLAKNLIRLSGNSVDEIGIEFTGIRPGeklf  540
            ASRLV+QAGALA+GGE+FVLDMG PVKIVDLAKNLIRLSG+  ++IGIEF+GIRPGEKL+
Sbjct  487  ASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLY  546

Query  541  eellkedeMNEKQIHPRIYVGQEMNVRIEEIEEFISSYTDLNEVEL-----RKRLLKLVN  595
            EELL+ +E++ +Q+  +IY G+        ++++I +  DL   +L     + +LLK+ N
Sbjct  547  EELLNKNEIHPQQVYEKIYRGK--------VDHYIKTEVDLIVEDLINNFSKEKLLKIAN  598

Query  596  Q  596
            +
Sbjct  599  R  599

70) OB2896 in NC_004193


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  452 bits (1703),  Expect = 2e-128, Method: Compositional matrix adjust.
 Identities = 320/594 (54%), Positives = 454/594 (77%), Gaps = 16/594 (2%)

Query  4    KQRLALLILLDSAIVSTAIFISFWVV---YPSYPEILLFEELGLSALALLVFHHIYAFIY  60
            K R+ +LI++DS IV+ ++F+++ ++   + +Y+    ++ L LS++ LLV HHI+A+++
Sbjct  7    KLRFLILIIIDSFIVTFSVFLGYAILEPYFKGYS----IDLLVLSSVILLVSHHIFAYVF  62

Query  61   KLYNKVWAYASVRELLAI-vqavtltvlsvavvqLIANGMIYRRALVITWLLHIVLIGGS  119
            +LY++ W YASV EL+++     +  V+++ +V L+ +   + R   ITW++H++LIGGS
Sbjct  63   NLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGS  122

Query  120  RFMWRVVRDRYIKQNANQKRTLiigagsagamiaRQLQNEHQSEIYPVAFIDDDIAKQKM  179
            R+ WRV R  +I +  ++K TL++GAG +G+++ R++   ++  + PV  +DDD  KQKM
Sbjct  123  RLFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKM  182

Query  180  EVYN-LPVVGRASDIPEKVKDFKIEHIVIAIPSLRNGELKRIVELCGETEAKVQMIPKIE  238
             + + + V G   DIPE VK F+I  I+IAIP+L +  L+ I  +C      +  +P+IE
Sbjct  183  TITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIE  242

Query  239  DLMTGKVSVSHLKNVEVEDLLGREPVKLDIQAISEYVTENTVMVTGAGGSIGSEVCRQVM  298
            D+++G + V++LK+VEVEDLLGR+PV LD+  IS  +T++T++VTGAGGSIGSE+CRQV 
Sbjct  243  DVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVS  302

Query  299  RFKPQKILLVGHGEFSIYNIDMELRTNYKDSEIEIVPLIGDVQDRDRMYQIMQEhhpavv  358
            +F PQKI+L+GHGE SIY+I+ EL   Y ++ IE+VP+I+DVQ++ R+ ++M+E  P  V
Sbjct  303  KFDPQKIILLGHGENSIYSIHQELSKTY-GNRIEFVPVIADVQNKTRILEVMNEFKPYAV  361

Query  359  yhaaahkhvPLMEYNPHEAIKNNIIGTKNVAEAADAFGVSTFVMVSTDKAVNPTNVMGAS  418
            YHAAAHKHVPLMEYNPHEAI+NNI+GTKNVAE+A    VS FVM+STDKAVNP+NVMGA+
Sbjct  362  YHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGAT  421

Query  419  KRIAEMVVQDLA-SRSSTKFVAVRFGNVLGSRGSVIPLFKKQMEQGGPITVTHPEMTRYF  477
            KRIAEMV+Q L    S T FVAVRFGNVLGSRGSVIPLFK+Q+E GGP+TVTHPEMTRYF
Sbjct  422  KRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYF  481

Query  478  MTIPEASRLVVQAGTLARGGEIFVLDMGNPVKIADLARNLIRLSGYNEDEIEIKYTGIRP  537
            MTIPEASRLV+QAG+LA+GGE+FVLDMG+PVKI DLA+NLIRLSG +E++I I ++GIRP
Sbjct  482  MTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRP  541

Query  538  GEKMFEELLGEDEVFPEQVYEKIYIGKT---VEVDQQLITNLLIHFEGFNTQTL  588
            GEK++EELL  +E+ P+QVYEKIY GK    +  + +LI + LI+   F+ + L
Sbjct  542  GEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLIN--NFSKEKL  593

71) BPUM_3081 in NC_009848


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  451 bits (1700),  Expect = 4e-128, Method: Compositional matrix adjust.
 Identities = 295/569 (52%), Positives = 427/569 (76%), Gaps = 7/569 (1%)

Query  6    RLSIIVALDSYLILVAVFFGFQFVQEAALTVYTFEMLVIsslsllIGHHLFSYIFHVYKQ  65
            R+ I++ +DS+++  +VF+G+ ++ E+ +  Y++++LV+SS+ LL++HH+F+Y+F++Y +
Sbjct  9    RFLILIIIDSFIVTFSVFLGYAIL-EPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHR  67

Query  66   VWAYTGVRELFSLMKTFVCSFLFSMAMLYLFVQTWPF-RFLFIVWLFHVLFIGASRMASR  124
             W Y++V EL S++K+   S++ ++ ++ L++   PF R+ FI W+ H+L+IG+SR+  R
Sbjct  68   AWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWR  127

Query  125  LLHDGAKRLQVEKERALIIGAGSAGTIIVRQLQQSSDVHIEPVAFIDDDKTKHKLEIMG-  183
            + +       VEK  +L++GAG +G++++R++ +S D++++PV  +DDDK K+K+ I   
Sbjct  128  VYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITER  187

Query  184  LPVLGGKEQIQTAVVMMDIQKIIIAIPSKSSHTLKGLYKECVATGVKTQIMPEMEQILKG  243
            + V G  E+I   V    I+KIIIAIP+ S   L+ + K C   GV    MP++E++L G
Sbjct  188  VKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSG  247

Query  244  THALNQLRDVQPEDLLGREPIQLDSSRLSVHLKGKTIMVTGAGGSIGSEICRQICVFAPQ  303
               +N+L+ V+ EDLLGR+P++LD + +S +L  KTI+VTGAGGSIGSEICRQ+  F PQ
Sbjct  248  ELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQ  307

Query  304  AIVLVGHGEFSIHSILLELKEIYGDTISLYPQIADIQDKQKMSEIVGQFQPDMIYHAAAH  363
             I+L+GHGE SI SI  EL   YG+ I + P IAD+Q+K ++ E++ +F+P  +YHAAAH
Sbjct  308  KIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAH  367

Query  364  KHVPLMEISPKEAVKNNIIGTKNVAEAAHEHGIETFVLISSDKAVNPANVMGATKRFAEM  423
            KHVPLME +P EA++NNI+GTKNVAE+A E  +  FV+IS+DKAVNP+NVMGATKR+AEM
Sbjct  368  KHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEM  427

Query  424  LIMQMG-ASSDTKFVAVRFGNVLGSRGSVIPIFKKQIEQGGPVTVTHPAMTRYFMTIPEA  482
            +I  +   +S T FVAVRFGNVLGSRGSVIP+FK+QIE GGPVTVTHP MTRYFMTIPEA
Sbjct  428  VIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEA  487

Query  483  SRLVIQAGALAEGRQIFVLDMGEPVKIVDLAENLIHLSGYTTDQIPITFTGIRPGEKMYE  542
            SRLV+QAGALA+G ++FVLDMG PVKIVDLA NLI+LSG   ++I I F+GIRPGEK+YE
Sbjct  488  SRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYE  547

Query  543  ELLNQHEKAQEQIFPKIHIGHALDGDPYV  571
            ELLN++E   +Q++ KI  G     D Y+
Sbjct  548  ELLNKNEIHPQQVYEKIYRGKV---DHYI  573

72) B1NLA3E_04360 in NC_021171


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  447 bits (1683),  Expect = 9e-127, Method: Compositional matrix adjust.
 Identities = 306/546 (57%), Positives = 432/546 (80%), Gaps = 15/546 (2%)

Query  57   VYKLYKKAWEYASVGELLIIFKVVTFSIMVAAIVQQVMVGEI-YFRLLTVTWSLHILLIG  115
            V++LY +AWEYASV+EL+ ++K VT SI+V+ ++  ++++E  ++RL  +TW +H+LLIG
Sbjct  61   VFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIG  120

Query  116  GSRFCWRIMRDTIIDTHQNKKRTLIIGAGSAGTMVARQLIKNSEANLIPVAFIDDNEKKH  175
            GSR+ WR+ R  +ID   +KK TL++GAG +G+++ R+++++ +  + PV  +DD+ +K+
Sbjct  121  GSRLFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQ  180

Query  176  QLEILG-ITVVGGVNEIEKTVKKLEIDNIIIAIPSLNRKELNSIFQECAKTKAKTKILPM  234
            ++ I   + V G V++I   VKK+ I +IIIAIP+L++K LN I + C         +P 
Sbjct  181  KMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPN  240

Query  235  LEDLVTGKISVNQFRDVQVEDLLGRDPVDLNIESISEYITDKVVLVTGAGGSIGSEICRQ  294
            +ED+++G + VN+++ V+VEDLLGRDPV+L++  IS  +T+K +LVTGAGGSIGSEICRQ
Sbjct  241  IEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQ  300

Query  295  ISNFTPRKLVLLGHGENSIYSIEMELKETFGITKIEFITEIADLQDAKKMMDVMGTYQPh  354
            +S+F P+K++LLGHGENSIYSI+ EL  T+G  +IEF+  IAD+Q+  ++++VM  ++P 
Sbjct  301  VSKFDPQKIILLGHGENSIYSIHQELSKTYG-NRIEFVPVIADVQNKTRILEVMNEFKPY  359

Query  355  vvyhaaahkhvPLMERNPEEAVKNNVIGTMNIANAASWHGVETFVMISTDKAVNPTSVMG  414
             VYHAAAHKHVPLME NP+EA++NN++GT N+A++A    V  FVMISTDKAVNP++VMG
Sbjct  360  AVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMG  419

Query  415  STKKLAEMIIQHM-DKNSKTKFVAVRFGNVLGSRGSVIPLFKKQIEKGGPITVTDPEMVR  473
            +TK++AEM+IQ + + NSKT FVAVRFGNVLGSRGSVIPLFK+QIE GGP+TVT+PEM R
Sbjct  420  ATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTR  479

Query  474  YFMTIPEASRLVIQAGSLARGGEVFILDMGEPVKIVDLAKNLIKLSGNNIEEIGIEFTGI  533
            YFMTIPEASRLV+QAG+LA+GGEVF+LDMG PVKIVDLAKNLI+LSG++ E+IGIEF+GI
Sbjct  480  YFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGI  539

Query  534  RPGeklfeellkddeVHDKQVYPKIYIGKTAELFFNE----IEELIANYSNMDKEALREK  589
            RPGEKL+EELL+ +E+H +QVY KIY GK  + +  E    +E+LI N+S       +EK
Sbjct  540  RPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFS-------KEK  592

Query  590  LLNLAN  595
            LL++AN
Sbjct  593  LLKIAN  598

73) Theco_3184 in NC_019897


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  442 bits (1665),  Expect = 3e-125, Method: Compositional matrix adjust.
 Identities = 295/524 (57%), Positives = 401/524 (77%), Gaps = 9/524 (1%)

Query  65   WEYASIGELIAIAKAVTLSIATAAIIQQLLVKDI-YFRLLAVTWMLHMLFIGGSRLCWRL  123
            WEYAS++EL+++ KAVT SI  + ++  LL+ +  ++RL  +TWM+H+L+IGGSRL WR+
Sbjct  69   WEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRV  128

Query  124  YRSARMPGGDGRKRTLIVGAGAAGTMVARQLLQPGS-ELRPVAFVDDDPAKHKLDILG-L  181
            YR   +  +  +K TL+VGAG +G+++ R++L++    ++PV  VDDD  K+K+ I   +
Sbjct  129  YRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERV  188

Query  182  PVLGGidrieriarekrieniVIAIPSLGKKALRRIFEECAKTEAKTQIMPKLEDLATGR  241
             V G ++ I  + +  RI +I+IAIP+L++K L  I   C         MP++ED+ +G 
Sbjct  189  KVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGE  248

Query  242  VSVSELRDVEVEDLLGREPVELDIDSISGYVTGRTILVTGAGGSIGSEICRQVAKFGPKK  301
            + V++L+ VEVEDLLGR+PVELD+  IS  +T +TILVTGAGGSIGSEICRQV+KF+P+K
Sbjct  249  LEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQK  308

Query  302  LVLLGHGENSIYSIEMELRDMYGDAGIEMVTEIADIQDVQKMMDVMQIHRPDVVYHAAAH  361
            ++LLGHGENSIYSI+ EL   YG+  IE V  IAD+Q+  ++++VM+  +P  VYHAAAH
Sbjct  309  IILLGHGENSIYSIHQELSKTYGNR-IEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAH  367

Query  362  KHVPLMERNPEEAVKNNLIGTMNTARAASWHGVHIFVMISTDKAVNPTSVMGASKRLAEM  421
            KHVPLME NP+EA++NN++GT N A +A    V  FVMISTDKAVNP++VMGA+KR+AEM
Sbjct  368  KHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEM  427

Query  422  YIQYM-DGISRTKFVAVRFGNVLGSRGSVIPRFRKQIEAGGPVTVTHPDMVRYFMTIPEA  480
             IQ + ++ S+T FVAVRFGNVLGSRGSVIP F++QIE+GGPVTVTHP+M RYFMTIPEA
Sbjct  428  VIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEA  487

Query  481  SRLVIQAGALAKGGEIFVLDMGEPVKIVDLARNLIRMSGYSVEDIGIRFTGIRPGEKLFE  540
            SRLV+QAGALA+GGE+FVLDMG PVKIVDLA+NLIR+SG   EDIGI F+GIRPGEKL+E
Sbjct  488  SRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYE  547

Query  541  ELMNPEEVQDHQVYPKIHVGKSQRIPIRE----IEDLAEHFAEA  580
            EL+N +E++ +QVY KI  GK ++    E    +EDL ++F+  
Sbjct  548  ELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSKE  591

74) MC28_2861 in NC_018693


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  434 bits (1634),  Expect = 5e-123, Method: Compositional matrix adjust.
 Identities = 288/507 (57%), Positives = 406/507 (81%), Gaps = 6/507 (1%)

Query  1    MYKKALEYASIGELLIICKVVTFSILTTAVVQQIIM-QKMYFRLLVVTWMIHILLIGGSR  59
            +Y +A EYAS++EL+ + K VT SI+ T ++  +++ +  ++RL  +TWM+H+LLIGGSR
Sbjct  64   LYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSR  123

Query  60   FIWRMYRDIYYVKKG-DKKRTLIVGAGSAGTMVARQLLKNNTAELMPVAFIDDNVKKHNL  118
            ++WR+YR  Y++ ++ +KK TL+VGAG +G+++ R++L+++   + PV  +DD+ +K+++
Sbjct  124  LFWRVYRR-YFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKM  182

Query  119  DIWG-IPVIGGMNQIDYVIKKLNIEIIILAIPSLNKRERNVILKDCLKTKVKTQILPMLE  177
             I   + V G +++I  ++KK+ I  II+AIP+L+++  N I K C    V    +P +E
Sbjct  183  TITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIE  242

Query  178  DLVTGKVSVNEFRDVQVEDLLGRDPVELDVEIISDYITDKVILVTGAGGSIGSEICRQVA  237
            D+++G + VN+++ V+VEDLLGRDPVELD+ +IS  +T+K ILVTGAGGSIGSEICRQV+
Sbjct  243  DVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVS  302

Query  238  KFKPKKLILLGHGENSIYSIEMELNEKYNDMRGVFIPEIADIQDEKKMHLIMNKHLPNVV  297
            KF P+K+ILLGHGENSIYSI+ EL+  Y + R  F+P IAD+Q+  ++  +MN   P  V
Sbjct  303  KFDPQKIILLGHGENSIYSIHQELSKTYGN-RIEFVPVIADVQNKTRILEVMNEFKPYAV  361

Query  298  YHAAAHKHVPLMENNPEEAVKNNLIGTMNIAEAARTHGVGTFVMISSDKAVNPTSVMGAT  357
            YHAAAHKHVPLME NP+EA++NN++GT N+AE+A+   V+ FVMIS+DKAVNP++VMGAT
Sbjct  362  YHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGAT  421

Query  358  KKLAEMVIQH-KDKISHTKFVTVRFGNVLGSRGSVIPLFKKQIQNGGPITVTHPDMVRYF  416
            K++AEMVIQ  ++  S T FV+VRFGNVLGSRGSVIPLFK+QI++GGP+TVTHP+M RYF
Sbjct  422  KRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYF  481

Query  417  MTIPEASRLVVQAGALAKGGEIFVLDMGEPVKIVDLAKNLIRLSGNSLDEIGIEFTGIRP  476
            MTIPEASRLV+QAGALA+GGE+FVLDMG PVKIVDLAKNLIRLSG+  ++IGIEF+GIRP
Sbjct  482  MTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRP  541

Query  477  GeklfeellkedeMNEKQVHPRIYVGQ  503
            GEKL+EELL+ +E++ +QV  +IY G+
Sbjct  542  GEKLYEELLNKNEIHPQQVYEKIYRGK  568

75) BATR1942_15095 in NC_014639


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  429 bits (1617),  Expect = 1e-121, Method: Compositional matrix adjust.
 Identities = 297/557 (54%), Positives = 423/557 (76%), Gaps = 3/557 (0%)

Query  1    MIIALDTYLVLLSVIIGYQFFEDSYQFYDSGallltavsllvshhVCAMLFHQYKQMWSY  60
            ++I +D+++V +SV++GY ++E  ++ Y  + L+L++V LLVSHH+ A +F+ Y + W Y
Sbjct  12   ILIIIDSFIVTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEY  71

Query  61   TGIGELIALLKGITLSAVMAGIVQYAVFHTVLF-RLLAVSWMLQLLLIGGTRVVSRVLKE  119
            ++++EL+++LK++T S V++ ++   ++    F RL  ++WM++LLLIGG+R+  RV + 
Sbjct  72   ASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRR  131

Query  120  RMGKKRSSSSRALIIGAGSGGTLMVRQLLQQNDFDITPVAFIDDDQTKHKLEIMG-VPVI  178
                +      +L++GAG GG++++R++L+ +D  + PV  +DDD+ K+K+ I   V V 
Sbjct  132  YFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQ  191

Query  179  GGKESIMPAVQKLRINNIIIAIPSLRTHELQILYKECVRTGVSIKIMPDFDEMLLGTRTA  238
            G  E I   V+K+RI++IIIAIP+L    L+ + K C   GV +  MP+++++L G    
Sbjct  192  GYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEV  251

Query  239  SQIRDVKAEDLLGRKPVTLDTSEISNSVKGKTIVVTGAGGSIGSEICRQISDFQPKNVVL  298
            ++++ V  EDLLGR PV LD + IS  +  KTI+VTGAGGSIGSEICRQ+S F+P++++L
Sbjct  252  NNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIIL  311

Query  299  LGHGENSIHSTHSELIGRFGKHVTFHTEIADVQDRDKMFTVMKKYEPhvvyhaaahkhvP  358
            LGHGENSI S H EL   +G+++ F   IADVQ++ +++ VM+ + P  VYHAAAHKHVP
Sbjct  312  LGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVP  371

Query  359  LMEHNPEEAVKNNIIGTRNVAEAADMCGTETFVLISSDKAVNPANVMGATKRFAEMIIMN  418
            LME NP+EA++NNI+GT+NVAE+A       FV+IS+DKAVNP+NVMGATKR+AEM+I +
Sbjct  372  LMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQS  431

Query  419  LG-KVSRTKFVAVRFGNVLGSRGSVIPVFKKQIEKGGPVTVTHPAMTRYFMTIPEASKLV  477
            L    S+T FVAVRFGNVLGSRGSVIP+FK+QIE GGPVTVTHP MTRYFMTIPEAS+LV
Sbjct  432  LNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLV  491

Query  478  IQAGALAKGRQIFVLDMGEPVKIVDLAKNLIHLSGYTTEQIPIEFTGIRPGEKMYEELLN  537
            +QAGALA+G ++FVLDMG PVKIVDLAKNLI+LSG   E+I IEF+GIRPGEK+YEELLN
Sbjct  492  LQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLN  551

Query  538  QNEVHAEQVFPKIHIGK  554
            +NE+H++QV+ KI  GK
Sbjct  552  KNEIHPQQVYEKIYRGK  568

76) HBHAL_1964 in NC_017668


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  428 bits (1612),  Expect = 4e-121, Method: Compositional matrix adjust.
 Identities = 302/596 (51%), Positives = 449/596 (76%), Gaps = 9/596 (1%)

Query  4    RQRLSLFIFIDSCIIITAVLISRMLVDSNF--YNFTPLIISTIGLLTVHLFFSFLLNLYK  61
            + R+ ++I+IDS I+  +V+++  ++++ F  Y++  L++S++ LL  H +F++++NLY 
Sbjct  7    KLRFLILIIIDSFIVTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYH  66

Query  62   KAWEYASIGELIIILKTVTYSiiviaaiqfiil-qavYLRALAIIWMINLLVIGGSRFLW  120
            +AWEYAS++EL+ +LK+VT SI+V   +  +++ ++ +LR   I WM++LL+IGGSR++W
Sbjct  67   RAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFW  126

Query  121  RIYRDNYLVQSNTKKRTLIIGAGSAGIMVVRQLQRSEDTDLCPVAFVDDSPIKHHLDILG  180
            R+YR  ++ ++  KK TL++GAG +G +++R++ RS+D  + PV  VDD   K+ + I  
Sbjct  127  RVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITE  186

Query  181  -IPvvggvgEIEKYVDQLDIENIIIAIPSLNREGIQNIFQECAKTEAKTQILPMLEDLVT  239
             + V G V +I   V ++ I +IIIAIP+L++  +++I + C         +P +ED+++
Sbjct  187  RVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLS  246

Query  240  GKVSVTQLRDVKVEDLLGRAPVDLDIDQISDYVKSQVVLVTGAGGSIGSEICRQIARFGP  299
            G + V +L+ V VEDLLGR PV+LD+  IS  + ++ +LVTGAGGSIGSEICRQ+++F+P
Sbjct  247  GELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDP  306

Query  300  EELILLGHGENSIHAIETELREKFSKNGIKIITEIADIQDGDKMDKIFNYYSPDVVYHAA  359
            + +ILLGHGENSI +I+ EL   +++  I ++  IAD+Q+  ++  + N + P  VYHAA
Sbjct  307  QKIILLGHGENSIYSIHQELSKTYGNR-IEFVPVIADVQNKTRILEVMNEFKPYAVYHAA  365

Query  360  AHKHVPLMERNPEEAVKNNMIGTYNVAKAARGSNTGTFVMISSDKAVNPTSVMGATKRLS  419
            AHKHVPLME NP+EA++NN++GT NVA +A+ ++ + FVMIS+DKAVNP++VMGATKR++
Sbjct  366  AHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIA  425

Query  420  EMIIQSMN-GYGNTKFVAVRFGNVLGSRGSVVPIFTKQIAKGGPVKVTHPEMIRYFMTIP  478
            EM+IQS+N + ++T FVAVRFGNVLGSRGSV+P+F +QI  GGPV VTHPEM RYFMTIP
Sbjct  426  EMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIP  485

Query  479  EASSLVIQAGALTQGGEIFVLDMGAPVKIVDLARNLIKLSGYTLEDIKIEFSGIRPGekl  538
            EAS LV+QAGAL+QGGE+FVLDMG PVKIVDLA+NLI+LSG   EDI IEFSGIRPGEKL
Sbjct  486  EASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKL  545

Query  539  yeellkddeVHENQVYPKIYLGKTANLYIDDIQEIINSYDRWDKEFLREQLLSLAN  594
            YEELL+ +E+H +QVY KIY GK  + YI    ++I   +   ++F +E+LL +AN
Sbjct  546  YEELLNKNEIHPQQVYEKIYRGKVDH-YIKTEVDLIV--EDLINNFSKEKLLKIAN  598

77) epsC in NC_014479


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  428 bits (1610),  Expect = 5e-121, Method: Compositional matrix adjust.
 Identities = 298/557 (54%), Positives = 417/557 (75%), Gaps = 3/557 (0%)

Query  1    MIIALDTYLVLNSVFAGYQFLKDSYQFYDSGallltavslllsYHVCAFLFRQYKQVWTY  60
            ++I +D+++V  SVF GY +L   ++ Y  + L+L++V LL+S H+ A++F  Y + W Y
Sbjct  12   ILIIIDSFIVTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEY  71

Query  61   TGLGELIVLLKGITLSAAVTGVIQYAVY-HTMFFRLLTACWVLQLLSIGGTRVLSRVLKE  119
            ++++EL+ +LK++T S  VT ++   +  ++ F+RL    W+++LL IGG+R++ RV + 
Sbjct  72   ASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRR  131

Query  120  SIRKNRSASSRALIIGAGSGGTLMVRQLLSKDDPDIIPVAFIDDDQTKHKLEIMG-LPVI  178
             +  N      +L++GAG GG++++R++L  +D  + PV  +DDD+ K+K+ I   + V 
Sbjct  132  YFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQ  191

Query  179  GGKESIMPAVQKLKINYIIIAIPSLRTHELQVLYKECVRTGVNIKIMPHFDEMLLGTRTA  238
            G  E I   V+K++I+ IIIAIP+L    L+ + K C   GV++  MP+++++L G    
Sbjct  192  GYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEV  251

Query  239  GQIRDVKAEDLLGRKPVTLDTSEISNRIKGKTVLVTGAGGSIGSEICRQISAFQPKEIIL  298
             +++ V  EDLLGR PV LD + IS  +  KT+LVTGAGGSIGSEICRQ+S F+P+ IIL
Sbjct  252  NNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIIL  311

Query  299  LGHGENSIHSIYTELNGRFGKHIVFHTEIADVQDRDKIFTLMKKYEPhvvyhaaahkhvP  358
            LGHGENSI SI  EL+  +G++I F   IADVQ++ +I+ +M+ + P  VYHAAAHKHVP
Sbjct  312  LGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVP  371

Query  359  LMEHNPEEAVKNNIIGTKNVAEAADMSGTETFVLISSDKAVNPANVMGATKRFAEMIIMN  418
            LME NP+EA++NNI+GTKNVAE+A  +    FV+IS+DKAVNP+NVMGATKR+AEM+I +
Sbjct  372  LMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQS  431

Query  419  LG-KISRTKFVAVHFGNVLGSRGSVIPIFKKQIEKGGPVTVTHPAMTRYFMTIPEASRLV  477
            L    S+T FVAV+FGNVLGSRGSVIP+FK+QIE GGPVTVTHP MTRYFMTIPEASRLV
Sbjct  432  LNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLV  491

Query  478  IQAGALAKGRQIFVLDMGEPVKIVDLAKNLIHLSGYTTEQIPIEFTGIRPGEKMYEELLN  537
            +QAGALA+G ++FVLDMG PVKIVDLAKNLI+LSG   E+I IEF+GIRPGEK+YEELLN
Sbjct  492  LQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLN  551

Query  538  KNEVHAEQIFPKIHIGK  554
            KNE+H++Q++ KI  GK
Sbjct  552  KNEIHPQQVYEKIYRGK  568

78) epsC in NC_020244


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  425 bits (1599),  Expect = 4e-120, Method: Compositional matrix adjust.
 Identities = 296/557 (54%), Positives = 416/557 (75%), Gaps = 3/557 (0%)

Query  1    MIIALDTYLVLNSVIAGYQFLKDSYQFYDSGallltavslllsYHVCAFLFNQYKQVWTY  60
            ++I +D+++V  SV+ GY +L   ++ Y  + L+L++V LL+S H+ A++FN Y + W Y
Sbjct  12   ILIIIDSFIVTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEY  71

Query  61   TGLGELIVLLKGITLSAAVTGIIQYAVY-HTMFFRLLTACWVLQLLSIGGTRILSRVLNE  119
            ++++EL+ +LK++T S  VT ++   +  ++ F+RL    W+++LL IGG+R++ RV   
Sbjct  72   ASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRR  131

Query  120  SIRKKRCASSRALIIGAGSGGTLMVRQLLSKDEPDIIPVAFIDDDQTKHKLEIMG-LPVI  178
             +  +      +L++GAG GG++++R++L  ++  + PV  +DDD+ K+K+ I   + V 
Sbjct  132  YFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQ  191

Query  179  GGKESIMPAVQKLKINYIIIAIPSLRTHELQVLYKECVRTGVSIKIMPHFDEMLLGTRTA  238
            G  E I   V+K++I+ IIIAIP+L    L+ + K C   GV +  MP+++++L G    
Sbjct  192  GYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEV  251

Query  239  GQIRDVKAEDLLGRKPVTLDTSEISNRIKGKTVLVTGAGGSIGSEICRQISAFQPKEIIL  298
             +++ V  EDLLGR PV LD + IS  +  KT+LVTGAGGSIGSEICRQ+S F+P+ IIL
Sbjct  252  NNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIIL  311

Query  299  LGHGENSIHSIYTELNGRFGKHIVFHTEIADVQDRDKMFTLMKKYEPhvvyhaaahkhvP  358
            LGHGENSI SI  EL+  +G++I F   IADVQ++ +++ +M+ + P  VYHAAAHKHVP
Sbjct  312  LGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVP  371

Query  359  LMEHNPEEAVKNNIIGTKNVAEAADMSGTETFVLISSDKAVNPANVMGATKRFAEMIIMN  418
            LME NP+EA++NNI+GTKNVAE+A  +    FV+IS+DKAVNP+NVMGATKR+AEM+I +
Sbjct  372  LMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQS  431

Query  419  LG-KVSRTKFVAVRFGNVLGSRGSVIPIFKKQIEKGGPVTVTHPAMTRYFMTIPEASRLV  477
            L    S+T FVAVRFGNVLGSRGSVIP+FK+QIE GGPVTVTHP MTRYFMTIPEASRLV
Sbjct  432  LNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLV  491

Query  478  IQAGALAKGRQIFVLDMGEPVKIVDLAKNLIHLSGYTTEQIPIEFTGIRPGEKMYEELLN  537
            +QAGALA+G ++FVLDMG PVKIVDLAKNLI+LSG   E+I IEF+GIRPGEK+YEELLN
Sbjct  492  LQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLN  551

Query  538  KNEVHAEQIFPKIHIGK  554
            KNE+H++Q++ KI  GK
Sbjct  552  KNEIHPQQVYEKIYRGK  568

79) epsC in NC_000964


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  424 bits (1598),  Expect = 4e-120, Method: Compositional matrix adjust.
 Identities = 295/557 (53%), Positives = 416/557 (75%), Gaps = 3/557 (0%)

Query  1    MIIALDTYLVLNSVIAGYQFLKDSYQFYDSGallltavslllsYHVCAFLFNQYKQVWTY  60
            ++I +D+++V  SV+ GY +L   ++ Y  + L+L++V LL+S H+ A++FN Y + W Y
Sbjct  12   ILIIIDSFIVTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEY  71

Query  61   TGLGELIVLLKGITLSAAVTGVIQYAVY-HTMFFRLLTACWVLQLLSIGGTRILSRVLNE  119
            ++++EL+ +LK++T S  VT ++   +  ++ F+RL    W+++LL IGG+R++ RV   
Sbjct  72   ASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRR  131

Query  120  SIRKKRCASSRALIIGAGSGGTLMVRQLLSKDEPDIIPVAFIDDDQTKHKLEIMG-LPVI  178
             +  +      +L++GAG GG++++R++L  ++  + PV  +DDD+ K+K+ I   + V 
Sbjct  132  YFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQ  191

Query  179  GGKESIMPAVQKLKINYIIIAIPSLRTHELQVLYKECVRTGVSIKIMPHFDEMLLGTRTA  238
            G  E I   V+K++I+ IIIAIP+L    L+ + K C   GV +  MP+++++L G    
Sbjct  192  GYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEV  251

Query  239  GQIRDVKAEDLLGRKPVTLDTSEISNRIKGKTVLVTGAGGSIGSEICRQISAFQPKEIIL  298
             +++ V  EDLLGR PV LD + IS  +  KT+LVTGAGGSIGSEICRQ+S F+P+ IIL
Sbjct  252  NNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIIL  311

Query  299  LGHGENSIHSIYTELNGRFGKHIVFHTEIADVQDRDKMFTLMKKYEPhvvyhaaahkhvP  358
            LGHGENSI SI  EL+  +G++I F   IADVQ++ +++ +M+ + P  VYHAAAHKHVP
Sbjct  312  LGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVP  371

Query  359  LMEHNPEEAVKNNIIGTKNVAEAADMSGTETFVLISSDKAVNPANVMGATKRFAEMIIMN  418
            LME NP+EA++NNI+GTKNVAE+A  +    FV+IS+DKAVNP+NVMGATKR+AEM+I +
Sbjct  372  LMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQS  431

Query  419  LG-KVSRTKFVAVRFGNVLGSRGSVIPIFKKQIEKGGPVTVTHPAMTRYFMTIPEASRLV  477
            L    S+T FVAVRFGNVLGSRGSVIP+FK+QIE GGPVTVTHP MTRYFMTIPEASRLV
Sbjct  432  LNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLV  491

Query  478  IQAGALAKGRQIFVLDMGEPVKIVDLAKNLIHLSGYTTEQVPIEFTGIRPGEKMYEELLN  537
            +QAGALA+G ++FVLDMG PVKIVDLAKNLI+LSG   E++ IEF+GIRPGEK+YEELLN
Sbjct  492  LQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLN  551

Query  538  KNEVHAEQIFPKIHIGK  554
            KNE+H++Q++ KI  GK
Sbjct  552  KNEIHPQQVYEKIYRGK  568

80) epsC in NC_020507


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  424 bits (1598),  Expect = 4e-120, Method: Compositional matrix adjust.
 Identities = 295/557 (53%), Positives = 416/557 (75%), Gaps = 3/557 (0%)

Query  1    MIIALDTYLVLNSVIAGYQFLKDSYQFYDSGallltavslllsYHVCAFLFNQYKQVWTY  60
            ++I +D+++V  SV+ GY +L   ++ Y  + L+L++V LL+S H+ A++FN Y + W Y
Sbjct  12   ILIIIDSFIVTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEY  71

Query  61   TGLGELIVLLKGITLSAAVTGVIQYAVY-HTMFFRLLTACWVLQLLSIGGTRILSRVLNE  119
            ++++EL+ +LK++T S  VT ++   +  ++ F+RL    W+++LL IGG+R++ RV   
Sbjct  72   ASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRR  131

Query  120  SIRKKRCASSRALIIGAGSGGTLMVRQLLSKDEPDIIPVAFIDDDQTKHKLEIMG-LPVI  178
             +  +      +L++GAG GG++++R++L  ++  + PV  +DDD+ K+K+ I   + V 
Sbjct  132  YFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQ  191

Query  179  GGKESIMPAVQKLKINYIIIAIPSLRTHELQVLYKECVRTGVSIKIMPHFDEMLLGTRTA  238
            G  E I   V+K++I+ IIIAIP+L    L+ + K C   GV +  MP+++++L G    
Sbjct  192  GYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEV  251

Query  239  GQIRDVKAEDLLGRKPVTLDTSEISNRIKGKTVLVTGAGGSIGSEICRQISAFQPKEIIL  298
             +++ V  EDLLGR PV LD + IS  +  KT+LVTGAGGSIGSEICRQ+S F+P+ IIL
Sbjct  252  NNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIIL  311

Query  299  LGHGENSIHSIYTELNGRFGKHIVFHTEIADVQDRDKMFTLMKKYEPhvvyhaaahkhvP  358
            LGHGENSI SI  EL+  +G++I F   IADVQ++ +++ +M+ + P  VYHAAAHKHVP
Sbjct  312  LGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVP  371

Query  359  LMEHNPEEAVKNNIIGTKNVAEAADMSGTETFVLISSDKAVNPANVMGATKRFAEMIIMN  418
            LME NP+EA++NNI+GTKNVAE+A  +    FV+IS+DKAVNP+NVMGATKR+AEM+I +
Sbjct  372  LMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQS  431

Query  419  LG-KVSRTKFVAVRFGNVLGSRGSVIPIFKKQIEKGGPVTVTHPAMTRYFMTIPEASRLV  477
            L    S+T FVAVRFGNVLGSRGSVIP+FK+QIE GGPVTVTHP MTRYFMTIPEASRLV
Sbjct  432  LNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLV  491

Query  478  IQAGALAKGRQIFVLDMGEPVKIVDLAKNLIHLSGYTTEQVPIEFTGIRPGEKMYEELLN  537
            +QAGALA+G ++FVLDMG PVKIVDLAKNLI+LSG   E++ IEF+GIRPGEK+YEELLN
Sbjct  492  LQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLN  551

Query  538  KNEVHAEQIFPKIHIGK  554
            KNE+H++Q++ KI  GK
Sbjct  552  KNEIHPQQVYEKIYRGK  568

81) BSn5_08105 in NC_014976


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  424 bits (1598),  Expect = 5e-120, Method: Compositional matrix adjust.
 Identities = 295/557 (53%), Positives = 416/557 (75%), Gaps = 3/557 (0%)

Query  1    MIIALDTYLVLNSVIAGYQFLKDSYQFYDSGallltavslllsYHVCAFLFNQYKQVWTY  60
            ++I +D+++V  SV+ GY +L   ++ Y  + L+L++V LL+S H+ A++FN Y + W Y
Sbjct  12   ILIIIDSFIVTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEY  71

Query  61   TGLGELIVLLKGITLSAAVTGIIQYAVY-HTMFFRLLTACWVLQLLSIGGTRILSRVLNE  119
            ++++EL+ +LK++T S  VT ++   +  ++ F+RL    W+++LL IGG+R++ RV   
Sbjct  72   ASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRR  131

Query  120  SIRKKRCASSRALIIGAGSGGTLMVRQLLSKDEPDIIPVAFIDDDQTKHKLEIMG-LPVI  178
             +  +      +L++GAG GG++++R++L  ++  + PV  +DDD+ K+K+ I   + V 
Sbjct  132  YFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQ  191

Query  179  GGKESIMPAVQKLKINYIIIAIPSLRTHELQVLYKECVRTGVSIKIMPHFDEMLLGTRTA  238
            G  E I   V+K++I+ IIIAIP+L    L+ + K C   GV +  MP+++++L G    
Sbjct  192  GYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEV  251

Query  239  GQIRDVKAEDLLGRKPVTLDTSEISNRIKGKTVLVTGAGGSIGSEICRQISAFQPKEIIL  298
             +++ V  EDLLGR PV LD + IS  +  KT+LVTGAGGSIGSEICRQ+S F+P+ IIL
Sbjct  252  NNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIIL  311

Query  299  LGHGENSIHSIYTELNGRFGKHIVFHTEIADVQDRDKMFTLMKKYEPhvvyhaaahkhvP  358
            LGHGENSI SI  EL+  +G++I F   IADVQ++ +++ +M+ + P  VYHAAAHKHVP
Sbjct  312  LGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVP  371

Query  359  LMEHNPEEAVKNNIIGTKNVAEAADMSGTETFVLISSDKAVNPANVMGATKRFAEMIIMN  418
            LME NP+EA++NNI+GTKNVAE+A  +    FV+IS+DKAVNP+NVMGATKR+AEM+I +
Sbjct  372  LMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQS  431

Query  419  LG-KVSRTKFVAVRFGNVLGSRGSVIPIFKKQIEKGGPVTVTHPAMTRYFMTIPEASRLV  477
            L    S+T FVAVRFGNVLGSRGSVIP+FK+QIE GGPVTVTHP MTRYFMTIPEASRLV
Sbjct  432  LNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLV  491

Query  478  IQAGALAKGRQIFVLDMGEPVKIVDLAKNLIHLSGYTTEQVPIEFTGIRPGEKMYEELLN  537
            +QAGALA+G ++FVLDMG PVKIVDLAKNLI+LSG   E++ IEF+GIRPGEK+YEELLN
Sbjct  492  LQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLN  551

Query  538  KNEVHAEQIFPKIHIGK  554
            KNE+H++Q++ KI  GK
Sbjct  552  KNEIHPQQVYEKIYRGK  568

82) A7A1_2654 in NC_019896


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  424 bits (1598),  Expect = 5e-120, Method: Compositional matrix adjust.
 Identities = 295/557 (53%), Positives = 416/557 (75%), Gaps = 3/557 (0%)

Query  1    MIIALDTYLVLNSVIAGYQFLKDSYQFYDSGallltavslllsYHVCAFLFNQYKQVWTY  60
            ++I +D+++V  SV+ GY +L   ++ Y  + L+L++V LL+S H+ A++FN Y + W Y
Sbjct  12   ILIIIDSFIVTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEY  71

Query  61   TGLGELIVLLKGITLSAAVTGIIQYAVY-HTMFFRLLTACWVLQLLSIGGTRILSRVLNE  119
            ++++EL+ +LK++T S  VT ++   +  ++ F+RL    W+++LL IGG+R++ RV   
Sbjct  72   ASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRR  131

Query  120  SIRKKRCASSRALIIGAGSGGTLMVRQLLSKDEPDIIPVAFIDDDQTKHKLEIMG-LPVI  178
             +  +      +L++GAG GG++++R++L  ++  + PV  +DDD+ K+K+ I   + V 
Sbjct  132  YFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQ  191

Query  179  GGKESIMPAVQKLKINYIIIAIPSLRTHELQVLYKECVRTGVSIKIMPHFDEMLLGTRTA  238
            G  E I   V+K++I+ IIIAIP+L    L+ + K C   GV +  MP+++++L G    
Sbjct  192  GYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEV  251

Query  239  GQIRDVKAEDLLGRKPVTLDTSEISNRIKGKTVLVTGAGGSIGSEICRQISAFQPKEIIL  298
             +++ V  EDLLGR PV LD + IS  +  KT+LVTGAGGSIGSEICRQ+S F+P+ IIL
Sbjct  252  NNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIIL  311

Query  299  LGHGENSIHSIYTELNGRFGKHIVFHTEIADVQDRDKMFTLMKKYEPhvvyhaaahkhvP  358
            LGHGENSI SI  EL+  +G++I F   IADVQ++ +++ +M+ + P  VYHAAAHKHVP
Sbjct  312  LGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVP  371

Query  359  LMEHNPEEAVKNNIIGTKNVAEAADMSGTETFVLISSDKAVNPANVMGATKRFAEMIIMN  418
            LME NP+EA++NNI+GTKNVAE+A  +    FV+IS+DKAVNP+NVMGATKR+AEM+I +
Sbjct  372  LMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQS  431

Query  419  LG-KVSRTKFVAVRFGNVLGSRGSVIPIFKKQIEKGGPVTVTHPAMTRYFMTIPEASRLV  477
            L    S+T FVAVRFGNVLGSRGSVIP+FK+QIE GGPVTVTHP MTRYFMTIPEASRLV
Sbjct  432  LNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLV  491

Query  478  IQAGALAKGRQIFVLDMGEPVKIVDLAKNLIHLSGYTTEQVPIEFTGIRPGEKMYEELLN  537
            +QAGALA+G ++FVLDMG PVKIVDLAKNLI+LSG   E++ IEF+GIRPGEK+YEELLN
Sbjct  492  LQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLN  551

Query  538  KNEVHAEQIFPKIHIGK  554
            KNE+H++Q++ KI  GK
Sbjct  552  KNEIHPQQVYEKIYRGK  568

83) yveM in NC_017196


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  424 bits (1597),  Expect = 5e-120, Method: Compositional matrix adjust.
 Identities = 295/557 (53%), Positives = 416/557 (75%), Gaps = 3/557 (0%)

Query  1    MIIALDTYLVLNSVIAGYQFLKDSYQFYDSGallltavslllsYHVCAFLFNQYKQVWTY  60
            ++I +D+++V  SV+ GY +L   ++ Y  + L+L++V LL+S H+ A++FN Y + W Y
Sbjct  12   ILIIIDSFIVTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEY  71

Query  61   TGLGELIVLLKGITLSAAVTGIIQYAVY-HTMFFRLLTACWVLQLLSIGGTRILSRVLNE  119
            ++++EL+ +LK++T S  VT ++   +  ++ F+RL    W+++LL IGG+R++ RV   
Sbjct  72   ASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRR  131

Query  120  SIRKKRCASSRALIIGAGSGGTLMVRQLLSKDEPDIIPVAFIDDDQTKHKLEIMG-LPVI  178
             +  +      +L++GAG GG++++R++L  ++  + PV  +DDD+ K+K+ I   + V 
Sbjct  132  YFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQ  191

Query  179  GGKESIMPAVQKLKINYIIIAIPSLRTHELQVLYKECVRTGVSIKIMPHFDEMLLGTRTA  238
            G  E I   V+K++I+ IIIAIP+L    L+ + K C   GV +  MP+++++L G    
Sbjct  192  GYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEV  251

Query  239  GQIRDVKAEDLLGRKPVTLDTSEISNRIKGKTVLVTGAGGSIGSEICRQISAFQPKEIIL  298
             +++ V  EDLLGR PV LD + IS  +  KT+LVTGAGGSIGSEICRQ+S F+P+ IIL
Sbjct  252  NNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIIL  311

Query  299  LGHGENSIHSIYTELNGRFGKHIVFHTEIADVQDRDKMFTLMKKYEPhvvyhaaahkhvP  358
            LGHGENSI SI  EL+  +G++I F   IADVQ++ +++ +M+ + P  VYHAAAHKHVP
Sbjct  312  LGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVP  371

Query  359  LMEHNPEEAVKNNIIGTKNVAEAADMSGTETFVLISSDKAVNPANVMGATKRFAEMIIMN  418
            LME NP+EA++NNI+GTKNVAE+A  +    FV+IS+DKAVNP+NVMGATKR+AEM+I +
Sbjct  372  LMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQS  431

Query  419  LG-KVSRTKFVAVRFGNVLGSRGSVIPIFKKQIEKGGPVTVTHPAMTRYFMTIPEASRLV  477
            L    S+T FVAVRFGNVLGSRGSVIP+FK+QIE GGPVTVTHP MTRYFMTIPEASRLV
Sbjct  432  LNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLV  491

Query  478  IQAGALAKGRQIFVLDMGEPVKIVDLAKNLIHLSGYTTEQVPIEFTGIRPGEKMYEELLN  537
            +QAGALA+G ++FVLDMG PVKIVDLAKNLI+LSG   E++ IEF+GIRPGEK+YEELLN
Sbjct  492  LQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLN  551

Query  538  KNEVHAEQIFPKIHIGK  554
            KNE+H++Q++ KI  GK
Sbjct  552  KNEIHPQQVYEKIYRGK  568

84) yveM in NC_017195


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  422 bits (1589),  Expect = 2e-119, Method: Compositional matrix adjust.
 Identities = 296/557 (54%), Positives = 416/557 (75%), Gaps = 3/557 (0%)

Query  1    MIIALDTYLVLNSVIAGYQFLKDSYQFYDSGallltavslllsYHVCAFLFNQYKQVWTY  60
            ++I +D+++V  SV+ GY +L   ++ Y  + L+L++V LL+S H+ A++FN Y + W Y
Sbjct  12   ILIIIDSFIVTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEY  71

Query  61   TGLGELIVLLKGITLSAAVTGVIQYAVY-HTMFFRLLTACWVLQLLSIGGTRILSRVLNE  119
            ++++EL+ +LK++T S  VT ++   +  ++ F+RL    W+++LL IGG+R++ RV   
Sbjct  72   ASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRR  131

Query  120  SIrkkrsassraLIIGAGSGGTLMVRQLLSKDEPDIIPVAFIDDDQTKHKLEIMG-LPVI  178
             +  +      +L++GAG GG++++R++L  ++  + PV  +DDD+ K+K+ I   + V 
Sbjct  132  YFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQ  191

Query  179  GGKESIMPAVQKLKINYIIIAIPSLRTHELQVLYKECVRTGVSIKIMPHFDEMLLGTRTA  238
            G  E I   V+K++I+ IIIAIP+L    L+ + K C   GV +  MP+++++L G    
Sbjct  192  GYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEV  251

Query  239  GQIRDVKAEDLLGRKPVTLDTSEISNRIKGKTVLVTGAGGSIGSEICRQISAFQPKEIIL  298
             +++ V  EDLLGR PV LD + IS  +  KT+LVTGAGGSIGSEICRQ+S F+P+ IIL
Sbjct  252  NNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIIL  311

Query  299  LGHGENSIHSIYTELNGRFGKHIVFHTEIADVQDRDKMFTLMKKYEPhvvyhaaahkhvP  358
            LGHGENSI SI  EL+  +G++I F   IADVQ++ +++ +M+ + P  VYHAAAHKHVP
Sbjct  312  LGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVP  371

Query  359  LMEHNPEEAVKNNIIGTKNVAEAADMSGTETFVLISSDKAVNPANVMGATKRFAEMIIMN  418
            LME NP+EA++NNI+GTKNVAE+A  +    FV+IS+DKAVNP+NVMGATKR+AEM+I +
Sbjct  372  LMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQS  431

Query  419  LGKVSS-TKFVAVRFGNVLGSRGSVIPIFKKQIEKGGPVTVTHPAMTRYFMTIPEASRLV  477
            L   +S T FVAVRFGNVLGSRGSVIP+FK+QIE GGPVTVTHP MTRYFMTIPEASRLV
Sbjct  432  LNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLV  491

Query  478  IQAGALAKGRQIFVLDMGEPVKIVDLAKNLIHLSGYTTEQIPIEFTGIRPGEKMYEELLN  537
            +QAGALA+G ++FVLDMG PVKIVDLAKNLI+LSG   E+I IEF+GIRPGEK+YEELLN
Sbjct  492  LQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLN  551

Query  538  KNEVHAEQIFPKIHIGK  554
            KNE+H++Q++ KI  GK
Sbjct  552  KNEIHPQQVYEKIYRGK  568

85) yveM in NC_016047


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  422 bits (1589),  Expect = 2e-119, Method: Compositional matrix adjust.
 Identities = 297/560 (54%), Positives = 419/560 (75%), Gaps = 3/560 (0%)

Query  26   RLSMIIALDTYLVLNSVIAGYQFLKDSYQFYDSGallltavslllsYHVCAFLFRQYKQV  85
            R+ ++I +D+++V  SV+ GY +L   ++ Y  + L+L++V LL+S H+ A++F  Y + 
Sbjct  9    RFLILIIIDSFIVTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRA  68

Query  86   WTYTGLGELIVLLKGITLSAAVTGVIQYAVY-HTMFFRLLTACWVLQLLSIGGTRVLSRV  144
            W Y++++EL+ +LK++T S  VT ++   +  ++ F+RL    W+++LL IGG+R++ RV
Sbjct  69   WEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRV  128

Query  145  LKESIrkkrsassraLIIGAGSGGTLMVRQLLSKDDPDIIPVAFIDDDQTKHKLEIMG-L  203
             +  +  +      +L++GAG GG++++R++L  +D  + PV  +DDD+ K+K+ I   +
Sbjct  129  YRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERV  188

Query  204  PVIGGKESIMPAVQKLKINYIIIAIPSLRTHELQVLYKECVRTGVNIKIMPHFDEMLLGT  263
             V G  E I   V+K++I+ IIIAIP+L    L+ + K C   GV++  MP+++++L G 
Sbjct  189  KVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGE  248

Query  264  RTAGQIRDVKAEDLLGRKPVTLDTSEISNRIKGKTVLVTGAGGSIGSEICRQISPFQPNA  323
                +++ V  EDLLGR PV LD + IS  +  KT+LVTGAGGSIGSEICRQ+S F+P+ 
Sbjct  249  LEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQK  308

Query  324  IILLGHGENSIHSIYTELNGRFGKHIVFHTEIADVQDRDKMFTLMKKYEPhvvyhaaahk  383
            IILLGHGENSI SI  EL+  +G++I F   IADVQ++ +++ +M+ + P  VYHAAAHK
Sbjct  309  IILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHK  368

Query  384  hvPLMEHNPEEAVKNNIIGTKNVAEAADMSGTETFVLISSDKAVNPANVMGATKRFAEMI  443
            HVPLME NP+EA++NNI+GTKNVAE+A  +    FV+IS+DKAVNP+NVMGATKR+AEM+
Sbjct  369  HVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMV  428

Query  444  IMNLG-KISRTKFVAVRFGNVLGSRGSVIPIFKKQIEKGGPVTVTHPAMTRYFMTIPEAS  502
            I +L    S+T FVAVRFGNVLGSRGSVIP+FK+QIE GGPVTVTHP MTRYFMTIPEAS
Sbjct  429  IQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEAS  488

Query  503  RLVIQAGALAKGRQIFVLDMGEPVKIVDLAKNLIHLSGYTTEQIPIEFTGIRPGEKMYEE  562
            RLV+QAGALA+G ++FVLDMG PVKIVDLAKNLI+LSG   E+I IEF+GIRPGEK+YEE
Sbjct  489  RLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEE  548

Query  563  LLNKNEVHAEQIFPKIHIGK  582
            LLNKNE+H++Q++ KI  GK
Sbjct  549  LLNKNEIHPQQVYEKIYRGK  568

86) I653_16690 in NC_020832


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  421 bits (1585),  Expect = 4e-119, Method: Compositional matrix adjust.
 Identities = 296/557 (54%), Positives = 415/557 (75%), Gaps = 3/557 (0%)

Query  1    MIIALDTYLVLNSVIAGYQFLKDSYQFYDSGallltavslllsYHVCAFLFNQYKQVWTY  60
            ++I +D+++V  SV+ GY +L   ++ Y  + L+L++V LL+S H+ A++FN Y + W Y
Sbjct  12   ILIIIDSFIVTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEY  71

Query  61   TGLGELIVLLKGITLSAAVTGIIQYAVY-HTMFFRLLTACWVLQLLSIGGTRILSRVLNE  119
            ++++EL+ +LK++T S  VT ++   +  ++ F+RL    W+++LL IGG+R++ RV   
Sbjct  72   ASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRR  131

Query  120  SIRKKRCASSRALIIGAGSGGTLMVRQLLSKDEPDIIPVAFIDDDQTKHKLEIMG-LPVI  178
             +  +      +L++GAG GG++++R++L  ++  + PV  +DDD+ K+K+ I   + V 
Sbjct  132  YFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQ  191

Query  179  GGKESIMPAVQKLKINYIIIAIPSLRTHELQVLYKECVRTGVSIKIMPHFDEMLLGTRTA  238
            G  E I   V+K++I+ IIIAIP+L    L+ + K C   GV +  MP+++++L G    
Sbjct  192  GYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEV  251

Query  239  GQIRDVKAEDLLGRKPVTLDTSEISNRIKGKTVLVTGAGGSIGSEICRQISAFQPKEIIL  298
             +++ V  EDLLGR PV LD + IS  +  KT+LVTGAGGSIGSEICRQ+S F+P+ IIL
Sbjct  252  NNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIIL  311

Query  299  LGHGENSIHSIYTELNGRFGKHIVFHTEIADVQDRDKMFPLMKKSEPhvvyhaaahkhvP  358
            LGHGENSI SI  EL+  +G++I F   IADVQ++ +++ +M+   P  VYHAAAHKHVP
Sbjct  312  LGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVP  371

Query  359  LMEHNPEEAVKNNIIGTKNVAEAADMSGTETFVLISSDKAVNPANVMGATKRFAEMIIMN  418
            LME NP+EA++NNI+GTKNVAE+A  +    FV+IS+DKAVNP+NVMGATKR+AEM+I +
Sbjct  372  LMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQS  431

Query  419  LG-KVSRTKFVAVRFGNVLGSRGSVIPIFKKQIEKGGPVTVTHPAMTRYFMTIPEASRLV  477
            L    S+T FVAVRFGNVLGSRGSVIP+FK+QIE GGPVTVTHP MTRYFMTIPEASRLV
Sbjct  432  LNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLV  491

Query  478  IQAGALAKGRQIFVLDMGEPVKIVDLAKNLIHLSGYTTEQIPIEFTGIRPGEKMYEELLN  537
            +QAGALA+G ++FVLDMG PVKIVDLAKNLI+LSG   E+I IEF+GIRPGEK+YEELLN
Sbjct  492  LQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLN  551

Query  538  KNEVHAEQIFPKIHIGK  554
            KNE+H++Q++ KI  GK
Sbjct  552  KNEIHPQQVYEKIYRGK  568

87) epsC in NC_020410


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  420 bits (1582),  Expect = 9e-119, Method: Compositional matrix adjust.
 Identities = 298/560 (54%), Positives = 420/560 (75%), Gaps = 3/560 (0%)

Query  6    RLSMIFALDTYLVLLSVVIGYQFFEDSYHFYDSGALLLTAVSMLISHHVCAFMFHQYKQV  65
            R+ +++ +D+++V +SV +GY ++E  +  Y  + L+L++V +L+SHH+ A++F+ Y + 
Sbjct  9    RFLILIIIDSFIVTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRA  68

Query  66   WTYTGIGELLDLLKGITLSAAVTAAVQYGVFHTILF-RLLAVSWMIQLLFIGGSRMISRV  124
            W Y++++EL+ +LK++T S  VT  +   ++    F RL  ++WM++LL+IGGSR++ RV
Sbjct  69   WEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRV  128

Query  125  LKETIGRKQNDSSRaliigagaggtllVRQLTQKNDLGIMPVAFIDDDQTKHKLKIMG-L  183
             +  +  +  +   +L++GAG GG++L+R++ + +D+ + PV  +DDD+ K+K+ I   +
Sbjct  129  YRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERV  188

Query  184  PVIGGKESIMPAVQRLRIHHIIIAIPSLCTHELQTLYKECVQTGAHIKIMPQFDEILLGT  243
             V G  E I   V+++RI  IIIAIP+L    L+ + K C   G ++  MP+++++L G 
Sbjct  189  KVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGE  248

Query  244  QAAGHIRDVKAEDLLGRKPVTLDTSKISDSIKGKTILVTGAGGSIGSEICRQISSFLPHE  303
                +++ V  EDLLGR PV LD + IS  +  KTILVTGAGGSIGSEICRQ+S F P+ 
Sbjct  249  LEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQK  308

Query  304  IVLLGHGENSIYSVHNELSARFGKEVLFHAEIADIQDRDKIFTLMKKYEPhvvyhaaahk  363
            I+LLGHGENSIYS+H+ELS  +G+ + F + IAD+Q++ +I+ +M+ + P  VYHAAAHK
Sbjct  309  IILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHK  368

Query  364  hvPLMEHNPEEAVKNNIIGTKNVAEAADMCGTETFVLISSDKAVNPANVMGATKRFAEMV  423
            HVPLME NP+EA++NNI+GTKNVAE+A       FV+IS+DKAVNP+NVMGATKR+AEMV
Sbjct  369  HVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMV  428

Query  424  IMNLG-KVSNTKFAAVRFGNVLGSRGSVIPIFKKQIEKGGPVTVTHPAMTRYFMTIPEAS  482
            I +L    S+T F AVRFGNVLGSRGSVIP+FK+QIE GGPVTVTHP MTRYFMTIPEAS
Sbjct  429  IQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEAS  488

Query  483  RLVIQAGALAKGRQIFVLDMGEPVKIVDLAKNLIHLSGYTTEQIPIEFSGIRPGEKMYEE  542
            RLV+QAGALA+G ++FVLDMG PVKIVDLAKNLI+LSG   E+I IEFSGIRPGEK+YEE
Sbjct  489  RLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEE  548

Query  543  LLNHNEVHTEQIFPKIHIGK  562
            LLN NE+H +Q++ KI  GK
Sbjct  549  LLNKNEIHPQQVYEKIYRGK  568

88) KSO_003295 in NC_020272


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  419 bits (1579),  Expect = 1e-118, Method: Compositional matrix adjust.
 Identities = 297/557 (54%), Positives = 418/557 (76%), Gaps = 3/557 (0%)

Query  1    MIFALDTYLVLLSVVIGYQFFEDSYHFYDSGALLLTAVSMLISHHVCAFMFHQYKQVWTY  60
            +++ +D+++V +SV +GY ++E  +  Y  + L+L++V +L+SHH+ A++F+ Y + W Y
Sbjct  12   ILIIIDSFIVTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEY  71

Query  61   TGIGELLDLLKGITLSAAVTAAVQYGVFHTILF-RLLAVSWMVQLLFIGGSRMISRVLKE  119
            ++++EL+ +LK++T S  VT  +   ++    F RL  ++WM++LL+IGGSR++ RV + 
Sbjct  72   ASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRR  131

Query  120  TIGRKQNDSSRaliigagaggtllVRQLTQKNDLGIMPVAFIDDDQTKHKLKIMG-LPVI  178
             +  +  +   +L++GAG GG++L+R++ + +D+ + PV  +DDD+ K+K+ I   + V 
Sbjct  132  YFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQ  191

Query  179  GGKESIMPAVQRLRIHHIIIAIPSLCTHELQTLYKECVQTGAHIKIMPQFDEILLGTQAA  238
            G  E I   V+++RI  IIIAIP+L    L+ + K C   G ++  MP+++++L G    
Sbjct  192  GYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEV  251

Query  239  GHIRDVKAEDLLGRKPVTLDTSKISDSIKGKTILVTGAGGSIGSEICRQISSFLPHEIVL  298
             +++ V  EDLLGR PV LD + IS  +  KTILVTGAGGSIGSEICRQ+S F P+ I+L
Sbjct  252  NNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIIL  311

Query  299  LGHGENSIYSVHNELSARFGKEVLFHAEIADIQDRDKIFTLMKKYEPhvvyhaaahkhvP  358
            LGHGENSIYS+H+ELS  +G+ + F + IAD+Q++ +I+ +M+ + P  VYHAAAHKHVP
Sbjct  312  LGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVP  371

Query  359  LMEHNPEEAVKNNIIGTKNVAEAADMCGTETFVLISSDKAVNPANVMGATKRFAEMVIMN  418
            LME NP+EA++NNI+GTKNVAE+A       FV+IS+DKAVNP+NVMGATKR+AEMVI +
Sbjct  372  LMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQS  431

Query  419  LG-KVSNTKFAAVRFGNVLGSRGSVIPIFKKQIEKGGPVTVTHPAMTRYFMTIPEASRLV  477
            L    S+T F AVRFGNVLGSRGSVIP+FK+QIE GGPVTVTHP MTRYFMTIPEASRLV
Sbjct  432  LNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLV  491

Query  478  IQAGALAKGRQIFVLDMGEPVKIVDLAKNLIHLSGYTTEQIPIEFSGIRPGEKMYEELLN  537
            +QAGALA+G ++FVLDMG PVKIVDLAKNLI+LSG   E+I IEFSGIRPGEK+YEELLN
Sbjct  492  LQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLN  551

Query  538  HNEVHTEQIFPKIHIGK  554
             NE+H +Q++ KI  GK
Sbjct  552  KNEIHPQQVYEKIYRGK  568

89) yveM in NC_016784


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  419 bits (1579),  Expect = 1e-118, Method: Compositional matrix adjust.
 Identities = 297/557 (54%), Positives = 418/557 (76%), Gaps = 3/557 (0%)

Query  1    MIFALDTYLVLLSVVIGYQFFEDSYHFYDSGALLLTAVTMLISHHVCAFMFHQYKQVWTY  60
            +++ +D+++V +SV +GY ++E  +  Y  + L+L++V +L+SHH+ A++F+ Y + W Y
Sbjct  12   ILIIIDSFIVTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEY  71

Query  61   TGIGELLDLLKGITLSAAVTAAVQYGVFHTILF-RLLAVSWMVQLLFIGGSRMISRVLKE  119
            ++++EL+ +LK++T S  VT  +   ++    F RL  ++WM++LL+IGGSR++ RV + 
Sbjct  72   ASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRR  131

Query  120  TIGRKQNDSSRaliigagaggtllVRQLTQKNDLGIMPVAFIDDDQTKHKLKIMG-LPVI  178
             +  +  +   +L++GAG GG++L+R++ + +D+ + PV  +DDD+ K+K+ I   + V 
Sbjct  132  YFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQ  191

Query  179  GGKESIMPAVQRLRIHHIIIAIPSLCTHELQTLYKECVQTGAHIKIMPQFDEILLGTQAA  238
            G  E I   V+++RI  IIIAIP+L    L+ + K C   G ++  MP+++++L G    
Sbjct  192  GYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEV  251

Query  239  GHIRDVKAEDLLGRKPVTLDTSKISDSIKGKTILVTGAGGSIGSEICRQISSFLPHEIVL  298
             +++ V  EDLLGR PV LD + IS  +  KTILVTGAGGSIGSEICRQ+S F P+ I+L
Sbjct  252  NNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIIL  311

Query  299  LGHGENSIYSVHNELSARFGKEVLFHAEIADIQDRDKIFTLMKKYEPhvvyhaaahkhvP  358
            LGHGENSIYS+H+ELS  +G+ + F + IAD+Q++ +I+ +M+ + P  VYHAAAHKHVP
Sbjct  312  LGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVP  371

Query  359  LMEHNPEEAVKNNIIGTKNVAEAADMCGTETFVLISSDKAVNPANVMGATKRFAEMVIMN  418
            LME NP+EA++NNI+GTKNVAE+A       FV+IS+DKAVNP+NVMGATKR+AEMVI +
Sbjct  372  LMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQS  431

Query  419  LG-KVSNTKFAAVRFGNVLGSRGSVIPIFKKQIEKGGPVTVTHPAMTRYFMTIPEASRLV  477
            L    S+T F AVRFGNVLGSRGSVIP+FK+QIE GGPVTVTHP MTRYFMTIPEASRLV
Sbjct  432  LNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLV  491

Query  478  IQAGALAKGRQIFVLDMGEPVKIVDLAKNLIHLSGYTTEQIPIEFSGIRPGEKMYEELLN  537
            +QAGALA+G ++FVLDMG PVKIVDLAKNLI+LSG   E+I IEFSGIRPGEK+YEELLN
Sbjct  492  LQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLN  551

Query  538  HNEVHTEQIFPKIHIGK  554
             NE+H +Q++ KI  GK
Sbjct  552  KNEIHPQQVYEKIYRGK  568

90) MY9_3480 in NC_017743


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  419 bits (1577),  Expect = 2e-118, Method: Compositional matrix adjust.
 Identities = 296/557 (54%), Positives = 414/557 (75%), Gaps = 3/557 (0%)

Query  1    MIIALDTYLVLNSVIAGYQFLKDSYQFYDSGallltavslllsYHVCAFLFNQYKQVWTY  60
            ++I +D+++V  SV+ GY +L   ++ Y  + L+L++V LL+S H+ A++FN Y + W Y
Sbjct  12   ILIIIDSFIVTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEY  71

Query  61   TGLGELLVLLKGITLSAAVTGVIQYAVY-HTMFFRLLTACWVLQLLSIGGTRILSRVLNE  119
            ++++EL+ +LK++T S  VT ++   +  ++ F+RL    W+++LL IGG+R++ RV   
Sbjct  72   ASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRR  131

Query  120  SIRKKRCASSRALIIGAGSGGTLMVRQLLSKDEPDIIPVAFIDDDQTKHKLEIMG-LPVI  178
             +  +      +L++GAG GG++++R++L  ++  + PV  +DDD+ K+K+ I   + V 
Sbjct  132  YFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQ  191

Query  179  GGKESIMPAVQKLKINYIIIAIPSLRTHELQVLYKECVRTGVSIKIMPHFEEMLLGTRTA  238
            G  E I   V+K++I+ IIIAIP+L    L+ + K C   GV +  MP++E++L G    
Sbjct  192  GYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEV  251

Query  239  GQIRDVKAEDLLGRKPVTLDTSEISNRIKGKTVLVTGAGGSIGSEICRQISAFLPKEIIL  298
             +++ V  EDLLGR PV LD + IS  +  KT+LVTGAGGSIGSEICRQ+S F P+ IIL
Sbjct  252  NNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIIL  311

Query  299  LGHGENSIHSIYTELNGRFGKHIVLHTEIADVQDRDKMFTLMKKYEPhvvyhaaahkhvP  358
            LGHGENSI SI  EL+  +G++I +   IADVQ++ +++ +M+ + P  VYHAAAHKHVP
Sbjct  312  LGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVP  371

Query  359  LMEHNPEEAVKNNIIGTKNVAEAADMSGTETFVLISSDKAVNPANVMGATKRFAEMIIMN  418
            LME NP+EA++NNI+GTKNVAE+A  +    FV+IS+DKAVNP+NVMGATKR+AEM+I +
Sbjct  372  LMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQS  431

Query  419  LGKVSS-TKFVAVRFGNVLGSRGSVIPIFKKQIEKGGPVTVTHPAMTRYFMTIPEASRLV  477
            L   +S T FVAVRFGNVLGSRGSVIP+FK+QIE GGPVTVTHP MTRYFMTIPEASRLV
Sbjct  432  LNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLV  491

Query  478  IQAGVLAKGRQIFVLDMGEPVKIVDLAKNLIHLSGYTTEQIPIEFTGIRPGEKMYEELLN  537
            +QAG LA+G ++FVLDMG PVKIVDLAKNLI+LSG   E+I IEF+GIRPGEK+YEELLN
Sbjct  492  LQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLN  551

Query  538  KNEVHAEQVFPKIHIGK  554
            KNE+H++QV+ KI  GK
Sbjct  552  KNEIHPQQVYEKIYRGK  568

91) SGO_2024 in NC_009785


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  418 bits (1572),  Expect = 5e-118, Method: Compositional matrix adjust.
 Identities = 269/483 (56%), Positives = 372/483 (78%), Gaps = 15/483 (3%)

Query  111  MFSILFSTSVRLAWRIWYGYKTGVRY--EEVASEMLLRTLVVGAGAGGSLFITTALKDSP  168
            M  +L+  + RL WR+   Y+   RY  ++        TLVVGAG GGS++I   L+ S 
Sbjct  113  MMHLLLIGGSRLFWRV---YR---RYFIDNAVEKK--ATLVVGAGQGGSVLIREMLR-SQ  163

Query  169  DIKIVAV--VDRDVSKHG-SFLHGIKVVGSDSQIPEIVANYEINQIVIAIPSLEPEEYER  225
            D+++ +V  VD D +K+  ++ + +KV G   +IPE+V ++ I++I+IAIP+L     + 
Sbjct  164  DMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNE  223

Query  226  ILTLCKATNATVKAMPKYEEVVTGKVRVSKLREIDISDLLGRKEVVLDQTSLKSNIEGKT  285
            I  +C+     +  MP+ E+V++G + V++L+ +++ DLLGR  V LD + +  ++  KT
Sbjct  224  INKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKT  283

Query  286  VLVTGAGGSIGSELCRQIARFNPDRLLLLGHGENSIYLIHKELYNQYGSKFEIIPVIADI  345
            +LVTGAGGSIGSE+CRQ+++F+P++++LLGHGENSIY IH+EL + YG+++E++PVIAD+
Sbjct  284  ILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADV  343

Query  346  QDRERIFQIMENYRPDRVYHAAAHKHVPLMEYNPKEAVKNNIYGTRNVAEAAKATGVTKF  405
            Q++ RI+++M++++P  VYHAAAHKHVPLMEYNP EA++NNI GT+NVAE+AK   V+KF
Sbjct  344  QNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKF  403

Query  406  VMISTDKAVNPPNVMGATKRIAEMVVTSLNEE-GKTMFAAVRFGNVLGSRGSVVPLFKEQ  464
            VMISTDKAVNP+NVMGATKRIAEMV+ SLNE+ +KT F AVRFGNVLGSRGSV+PLFK+Q
Sbjct  404  VMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQ  463

Query  465  IAKGGPVTVTDFRMTRYFMTIPEASRLVIQAGALMHGGEVFVLDMGEPVKILDLAKKMIS  524
            I  GGPVTVT+  MTRYFMTIPEASRLV+QAGAL +GGEVFVLDMG PVKI+DLAK++I 
Sbjct  464  IESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIR  523

Query  525  LSGHSEADINIVETGIRPGEKLYEELLSTQERVDEQVYEKIFVGNVHAPAKKEVDDFIDT  584
            LSG  E DI I  +GIRPGEKLYEELL+ +E   +QVYEKI+ G+V+   K EVD +++ 
Sbjct  524  LSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVED  583

Query  585  LLE  587
            L++
Sbjct  584  LIN  586

92) epsC in NC_009725


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  416 bits (1564),  Expect = 2e-117, Method: Compositional matrix adjust.
 Identities = 296/557 (54%), Positives = 416/557 (75%), Gaps = 3/557 (0%)

Query  1    MIFALDTYLVLLSVVIGYQFFEDSYHFYDSGALLLTAVSMLISHHVCAFMFHQYKQVWTY  60
            +++ +D+++V +SV +GY ++E  +  Y  + L+L++V +L+SHH+ A++F+ Y + W Y
Sbjct  12   ILIIIDSFIVTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEY  71

Query  61   TGIGELLDLLKGITLSAAVTAAVQYGVFHTILF-RLLAVSWMVQLLFIGGSRMISRVLKE  119
            ++++EL+ +LK++T S  VT  +   ++    F RL  ++WM++LL+IGGSR++ RV + 
Sbjct  72   ASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRR  131

Query  120  TIGRKQNDSSRaliigagaggtllVRQLTQKNDLGIMPVAFIDDDQTKHKLEIMG-LPVI  178
             +  +  +   +L++GAG GG++L+R++ + +D+ + PV  +DDD+ K+K+ I   + V 
Sbjct  132  YFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQ  191

Query  179  GGKESIMPAVQRLRIHHIIIAIPSLCTHELQTLYKECVQTGAHIKIMPQFDEILLGTQAA  238
            G  E I   V+++RI  IIIAIP+L    L+ + K C   G ++  MP+++++L G    
Sbjct  192  GYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEV  251

Query  239  GHIRDVKAEDLLGRKPVTLDTSKISDSIKGKTILVTGAGGSIGSEICRQISAFLPREIVL  298
             +++ V  EDLLGR PV LD + IS  +  KTILVTGAGGSIGSEICRQ+S F P+ I+L
Sbjct  252  NNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIIL  311

Query  299  LGHGENSIHSVHTELSARFGKEVLFHAEIADIQDRDKIFTLMKKYEPhvvyhaaahkhvP  358
            LGHGENSI S+H ELS  +G+ + F + IAD+Q++ +I+ +M+ + P  VYHAAAHKHVP
Sbjct  312  LGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVP  371

Query  359  LMEHNPEEAVKNNIIGTKNVAEAADMCGTETFVLISSDKAVNPANVMGATKRFAEMVIMN  418
            LME NP+EA++NNI+GTKNVAE+A       FV+IS+DKAVNP+NVMGATKR+AEMVI +
Sbjct  372  LMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQS  431

Query  419  LG-KVSRTKFAAVRFGNVLGSRGSVIPIFKKQIEKGGPVTVTHPAMTRYFMTIPEASRLV  477
            L    S+T F AVRFGNVLGSRGSVIP+FK+QIE GGPVTVTHP MTRYFMTIPEASRLV
Sbjct  432  LNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLV  491

Query  478  IQAGALAKGRQIFVLDMGEPVKIVDLAKNLIHLSGYTTEQIPIEFSGIRPGEKMYEELLN  537
            +QAGALA+G ++FVLDMG PVKIVDLAKNLI+LSG   E+I IEFSGIRPGEK+YEELLN
Sbjct  492  LQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLN  551

Query  538  HNEVHTEQIFPKIHIGK  554
             NE+H +Q++ KI  GK
Sbjct  552  KNEIHPQQVYEKIYRGK  568

93) epsC in NC_022075


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  416 bits (1566),  Expect = 2e-117, Method: Compositional matrix adjust.
 Identities = 297/560 (54%), Positives = 418/560 (75%), Gaps = 3/560 (0%)

Query  6    RLSMIFALDTYLVLLSVVIGYQFFEDSYHFYDSGALLLTAVSMLISHHVCAFMFHQYKQV  65
            R+ +++ +D+++V +SV +GY ++E  +  Y  + L+L++V +L+SHH+ A++F+ Y + 
Sbjct  9    RFLILIIIDSFIVTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRA  68

Query  66   WTYTGIGELLDLLKGITLSAAVTAAVQYGVFHTILF-RLLAVSWMVQLLFIGGSRMISRV  124
            W Y++++EL+ +LK++T S  VT  +   ++    F RL  ++WM++LL+IGGSR++ RV
Sbjct  69   WEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRV  128

Query  125  LKETIGRKQNDSSRaliigagaggtllVRQLTQKNDLGIMPVAFIDDDQTKHKLEIMG-L  183
             +  +  +  +   +L++GAG GG++L+R++ + +D+ + PV  +DDD+ K+K+ I   +
Sbjct  129  YRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERV  188

Query  184  PVIGGKESIMPAVQRLRIHHIIIAIPSLCTHELQTLYKECVQTGAHIKIMPQFDEILLGT  243
             V G  E I   V+++RI  IIIAIP+L    L+ + K C   G ++  MP+++++L G 
Sbjct  189  KVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGE  248

Query  244  QAAGHIRDVKAEDLLGRKPVTLDTSKISDSIKGKTILVTGAGGSIGSEICRQISAFLPRE  303
                +++ V  EDLLGR PV LD + IS  +  KTILVTGAGGSIGSEICRQ+S F P+ 
Sbjct  249  LEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQK  308

Query  304  IVLLGHGENSIHSVHTELSARFGKEVLFHAEIADIQDRDKIFTLMKKYEPhvvyhaaahk  363
            I+LLGHGENSI S+H ELS  +G+ + F + IAD+Q++ +I+ +M+ + P  VYHAAAHK
Sbjct  309  IILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHK  368

Query  364  hvPLMEHNPEEAVKNNIIGTKNVAEAADMCGTETFVLISSDKAVNPANVMGATKRFAEMV  423
            HVPLME NP+EA++NNI+GTKNVAE+A       FV+IS+DKAVNP+NVMGATKR+AEMV
Sbjct  369  HVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMV  428

Query  424  IMNLG-KVSRTKFAAVRFGNVLGSRGSVIPIFKKQIEKGGPVTVTHPAMTRYFMTIPEAS  482
            I +L    S+T F AVRFGNVLGSRGSVIP+FK+QIE GGPVTVTHP MTRYFMTIPEAS
Sbjct  429  IQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEAS  488

Query  483  RLVIQAGALAKGRQIFVLDMGEPVKIVDLAKNLIHLSGYTTEQIPIEFSGIRPGEKMYEE  542
            RLV+QAGALA+G ++FVLDMG PVKIVDLAKNLI+LSG   E+I IEFSGIRPGEK+YEE
Sbjct  489  RLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEE  548

Query  543  LLNHNEVHTEQIFPKIHIGK  562
            LLN NE+H +Q++ KI  GK
Sbjct  549  LLNKNEIHPQQVYEKIYRGK  568

94) epsC in NC_022081


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  416 bits (1566),  Expect = 2e-117, Method: Compositional matrix adjust.
 Identities = 296/560 (53%), Positives = 419/560 (75%), Gaps = 3/560 (0%)

Query  6    RLSMIFALDTYLVLLSVVIGYQFFEDSYHFYDSGALLLTAVSMLISHHVCAFMFHQYKQV  65
            R+ +++ +D+++V +SV +GY ++E  +  Y  + L+L++V +L+SHH+ A++F+ Y + 
Sbjct  9    RFLILIIIDSFIVTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRA  68

Query  66   WTYTGIGELLALMKGITLSAAVTAAVQYGVFHTILF-RLLAVSWMVQLLFIGGSRMISRV  124
            W Y++++EL++++K++T S  VT  +   ++    F RL  ++WM++LL+IGGSR++ RV
Sbjct  69   WEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRV  128

Query  125  LKETIGRKQNDSSRaliigagaggtllVRQLTQKNDLGIMPVAFIDDDQTKHKLEIMG-L  183
             +  +  +  +   +L++GAG GG++L+R++ + +D+ + PV  +DDD+ K+K+ I   +
Sbjct  129  YRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERV  188

Query  184  PVIGGKESIMPAVQRLRIHHIIIAIPSLCTHELQTLYKECVQTGAHIKIMPQFDEILLGT  243
             V G  E I   V+++RI  IIIAIP+L    L+ + K C   G ++  MP+++++L G 
Sbjct  189  KVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGE  248

Query  244  QAAGHIRDVKAEDLLGRKPVTLDTSKISDSIKGKTILVTGAGGSIGSEICRQISAFLPRE  303
                +++ V  EDLLGR PV LD + IS  +  KTILVTGAGGSIGSEICRQ+S F P+ 
Sbjct  249  LEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQK  308

Query  304  IVLLGHGENSIHSVHTELSARFGKEVLFHAEIADIQDRDKIFTLMKKYEPhvvyhaaahk  363
            I+LLGHGENSI S+H ELS  +G+ + F + IAD+Q++ +I+ +M+ + P  VYHAAAHK
Sbjct  309  IILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHK  368

Query  364  hvPLMEHNPEEAVKNNIIGTKNVAEAADMCGTETFVLISSDKAVNPANVMGATKRFAEMV  423
            HVPLME NP+EA++NNI+GTKNVAE+A       FV+IS+DKAVNP+NVMGATKR+AEMV
Sbjct  369  HVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMV  428

Query  424  IMNLG-KVSRTKFAAVRFGNVLGSRGSVIPIFKKQIEKGGPVTVTHPAMTRYFMTIPEAS  482
            I +L    S+T F AVRFGNVLGSRGSVIP+FK+QIE GGPVTVTHP MTRYFMTIPEAS
Sbjct  429  IQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEAS  488

Query  483  RLVIQAGALAKGRQIFVLDMGEPVKIVDLAKNLIHLSGYTTEQIPIEFSGIRPGEKMYEE  542
            RLV+QAGALA+G ++FVLDMG PVKIVDLAKNLI+LSG   E+I IEFSGIRPGEK+YEE
Sbjct  489  RLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEE  548

Query  543  LLNHNEVHTEQIFPKIHIGK  562
            LLN NE+H +Q++ KI  GK
Sbjct  549  LLNKNEIHPQQVYEKIYRGK  568

95) epsC in NC_015391


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  415 bits (1563),  Expect = 2e-117, Method: Compositional matrix adjust.
 Identities = 260/434 (60%), Positives = 350/434 (81%), Gaps = 5/434 (1%)

Query  94   QTAEKIRTLVVGAGDGGNLFIKNIQKNSTDIKVVGV--VDDDEAKHGMRLYS-IPILGNI  150
            ++ EK  TLVVGAG+GG+++I+++ + S D+++  V  VDDD  K+ M +   + + G +
Sbjct  136  NAVEKKATLVVGAGQGGSVLIREMLR-SQDMRMQPVLAVDDDKNKQKMTITERVKVQGYV  194

Query  151  SDIPVFTKKLNVEQITIAIPSLKPKQLEKILEICNDINLPVNLMPSIEDVINGKLMVSRF  210
             DIP + KK+ + +I IAIP+L  K+L+ I  ICN   + +  MP+IEDV++G L V+ +
Sbjct  195  EDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNL  254

Query  211  REIDVVDLLGRDEVTLDTKQISEDLFGKTILVSGAGGSIGSEICRIISTFAPKKIILLGH  270
            + ++V DLLGRD V LD   IS +L  KTILV+GAGGSIGSEICR +S F P+KIILLGH
Sbjct  255  KKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGH  314

Query  271  GENSIYQIHRELNKNFVGKIDITPVIADVQNRQRMFDIMEMYKPDIVYHAAAHKHVPMME  330
            GENSIY IH+EL+K +  +I++ PVIADVQN+ R++++M+ +KP  VYHAAAHKHVP+ME
Sbjct  315  GENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLME  374

Query  331  SNTFEAVRNNVYGTKNIAEAAKAANVGTFIMISTDKAVNPPNVMGATKRIAEMIVTSLNE  390
             N  EA+RNN+ GTKN+AE+AK ++V+ F+MISTDKAVNP+NVMGATKRIAEM++ SLNE
Sbjct  375  YNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNE  434

Query  391  E-GKTNFAAVRFGNVLGSRGSVVPLFKEQIKAGGPVTVTDFRMTRYFMTIPEASRLVIQA  449
            + +KT+F AVRFGNVLGSRGSV+PLFK+QI +GGPVTVT+  MTRYFMTIPEASRLV+QA
Sbjct  435  DNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQA  494

Query  450  GTLAKGGEIFVLDMGKPVKIVDLAKKVIKLSGFSDDEISVVETGIRPGEKLYEELLIASE  509
            G+LA+GGE+FVLDMGKPVKIVDLAK++I+LSG  +++I++  +GIRPGEKLYEELL  +E
Sbjct  495  GALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNE  554

Query  510  NTGEKVFDKIFVGK  523
               ++V++KI+ GK
Sbjct  555  IHPQQVYEKIYRGK  568

96) capD in NC_009009


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  415 bits (1562),  Expect = 3e-117, Method: Compositional matrix adjust.
 Identities = 273/481 (57%), Positives = 377/481 (79%), Gaps = 11/481 (2%)

Query  108  LLSFLLVIASRLTWREIHEFVQHPSALLGKKVDGTKTLVVGSGDGASLFIKTAQQKSKDL  167
            ++ +LL+ +SRL WR  + +      ++++ V+   TLVVG+G+G+S++I+    +S+D+
Sbjct  113  MMHLLLIGGSRLFWRVYRRY------FIDNAVEKKATLVVGAGQGGSVLIR-EMLRSQDM  165

Query  168  KIVAI--VDDDKNKQN-TYLHGVKVVGTTEQIPEIVGNYEVEQIVIAIPSLAPDDYERIV  224
            ++ ++  VDDDKNKQ+ T  + VKV G  E+IPE+V ++ + +I+IAIP+L+    + I 
Sbjct  166  RMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEIN  225

Query  225  EYCQQTEVKVNAMPKYEQVITGKLSVSKLQEIDIADLLGRKEVKLDQQSLKSNIKCKTVL  284
              C+   V +  MP+ E+V++G L V++L+ +++ DLLGR  V LD   +  ++  KT+L
Sbjct  226  KICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTIL  285

Query  285  VTGAGGSIGSELCRQIAQFCPARLLLLGHGENSIYLIHKELSSRYKDDIELIPIIADIQD  344
            VTGAGGSIGSE+CRQ+++F P +++LLGHGENSIY IH+ELS  Y + IE++P+IAD+Q+
Sbjct  286  VTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQN  345

Query  345  RERIFHIMETYRPDRVYHAAAHKHVPLMEYNPTEAVKNNIYGTRNvaeaakaagvakFVM  404
            + RI+++M+ ++P  VYHAAAHKHVPLMEYNP EA++NNI GT+NVAE+AK + V+KFVM
Sbjct  346  KTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVM  405

Query  405  ISTDKAVNPPNVMGATKRVAEMVVTSLNEE-GKTLFSAVRFGNVLGSRGSVVPLFKEQIA  463
            ISTDKAVNP+NVMGATKR+AEMV+ SLNE+ +KT F AVRFGNVLGSRGSV+PLFK+QI 
Sbjct  406  ISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIE  465

Query  464  KGGPITVTDFRMTRYFMTIPEASRLVIQAGALMQGGEVFVLDMGEPVKILDLAKKMITLS  523
             GGP+TVT+  MTRYFMTIPEASRLV+QAGAL QGGEVFVLDMG PVKI+DLAK++I LS
Sbjct  466  SGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLS  525

Query  524  GHTEEEIQIQEAGIRPGEKLYEELLSAKEKVNDQVYEKIFVGNVQSLPKTEVDSYVDSLL  583
            G  EE+I I+ +GIRPGEKLYEELL+ +E   +QVYEKI+ G+V+   KTEVD  V+ L+
Sbjct  526  GKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLI  585

Query  584  T  584
             
Sbjct  586  N  586

97) epsC in NC_017190


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  415 bits (1563),  Expect = 3e-117, Method: Compositional matrix adjust.
 Identities = 298/560 (54%), Positives = 419/560 (75%), Gaps = 3/560 (0%)

Query  6    RLSMIFALDTYLVLLSVVIGYQFFEDSYHFYDSGALLLTAVSMLISHHVCAFMFHQYKQV  65
            R+ +++ +D+++V +SV +GY ++E  +  Y  + L+L++V +L+SHH+ A++F+ Y + 
Sbjct  9    RFLILIIIDSFIVTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRA  68

Query  66   WTYTGIGELLALLKGITLSAAVTAAVQYGVFHTILF-RLLAVSWMVQLLFIGGSRMISRV  124
            W Y++++EL+++LK++T S  VT  +   ++    F RL  ++WM++LL+IGGSR++ RV
Sbjct  69   WEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRV  128

Query  125  LKETIGKKQNDSSraliigagaggtllarqltQKNDLGIMPVAFIDDDQTKHKLEIMG-L  183
             +  +  +  +   +L++GAG GG++L R++ + +D+ + PV  +DDD+ K+K+ I   +
Sbjct  129  YRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERV  188

Query  184  PVIGGKESILPAVQRLRIHHIIIAIPSLRTHELQTLYKECVQTGAHIKIMPQFDEILLGT  243
             V G  E I   V+++RI  IIIAIP+L    L+ + K C   G ++  MP+++++L G 
Sbjct  189  KVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGE  248

Query  244  QAAGHIRDVNAEDLLGRKPVTLDTSKISDSIKGKTILVTGAGGSIGSEICRQISSFRPRE  303
                +++ V+ EDLLGR PV LD + IS  +  KTILVTGAGGSIGSEICRQ+S F P+ 
Sbjct  249  LEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQK  308

Query  304  IVLLGHGENSIYSVHGELSARFGKEVLFHAEIADIQDRDKIFTLMKKYEPhvvyhaaahk  363
            I+LLGHGENSIYS+H ELS  +G+ + F + IAD+Q++ +I+ +M+ + P  VYHAAAHK
Sbjct  309  IILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHK  368

Query  364  hvPLMEHNPEEAVKNNILGTKNVAEAADMCGTETFVLISSDKAVNPANVMGATKRFAEMV  423
            HVPLME NP+EA++NNILGTKNVAE+A       FV+IS+DKAVNP+NVMGATKR+AEMV
Sbjct  369  HVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMV  428

Query  424  IMNLG-KISRTKFAAVRFGNVLGSRGSVIPIFKKQIAKGGPVTVTHPAMTRYFMTIPEAS  482
            I +L    S+T F AVRFGNVLGSRGSVIP+FK+QI  GGPVTVTHP MTRYFMTIPEAS
Sbjct  429  IQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEAS  488

Query  483  RLVIQAGALAKGRQIFVLDMGEPVKIVDLAKNLIHLSGYTTEQIPIEFSGIRPGEKMYEE  542
            RLV+QAGALA+G ++FVLDMG PVKIVDLAKNLI+LSG   E+I IEFSGIRPGEK+YEE
Sbjct  489  RLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEE  548

Query  543  LLNHNEVHTEQIFPKIHIGK  562
            LLN NE+H +Q++ KI  GK
Sbjct  549  LLNKNEIHPQQVYEKIYRGK  568

98) epsC in NC_017061


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  415 bits (1563),  Expect = 3e-117, Method: Compositional matrix adjust.
 Identities = 296/557 (54%), Positives = 416/557 (75%), Gaps = 3/557 (0%)

Query  1    MIFALDTYLVLLSVVIGYQFFEDSYHFYDSGALLLTAVSMLISHHVCAFMFHQYKQVWTY  60
            +++ +D+++V +SV +GY ++E  +  Y  + L+L++V +L+SHH+ A++F+ Y + W Y
Sbjct  12   ILIIIDSFIVTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEY  71

Query  61   TGIGELLDLLKGITLSAAVTAAVQYGVFHTILF-RLLAVSWMVQLLFIGGSRMISRVLKE  119
            ++++EL+ +LK++T S  VT  +   ++    F RL  ++WM++LL+IGGSR++ RV + 
Sbjct  72   ASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRR  131

Query  120  TIGRKQNDSSRaliigagaggtllVRQLTQKNDLGIMPVAFIDDDQTKHKLEIMG-LPVI  178
             +  +  +   +L++GAG GG++L+R++ + +D+ + PV  +DDD+ K+K+ I   + V 
Sbjct  132  YFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQ  191

Query  179  GGKESIMPAVQRLRIHHIIIAIPSLCTHELQTLYKECVQTGAHIKIMPQFDEILLGTQAA  238
            G  E I   V+++RI  IIIAIP+L    L+ + K C   G ++  MP+++++L G    
Sbjct  192  GYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEV  251

Query  239  GHIRDVKAEDLLGRKPVTLDTSKISDSIKGKTILVTGAGGSIGSEICRQISAFLPREIVL  298
             +++ V  EDLLGR PV LD + IS  +  KTILVTGAGGSIGSEICRQ+S F P+ I+L
Sbjct  252  NNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIIL  311

Query  299  LGHGENSIHSVHTELSARFGKEVLFHAEIADIQDRDKIFTLMKKYEPhvvyhaaahkhvP  358
            LGHGENSI S+H ELS  +G+ + F + IAD+Q++ +I+ +M+ + P  VYHAAAHKHVP
Sbjct  312  LGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVP  371

Query  359  LMEHNPEEAVKNNIIGTKNVAEAADMCGTETFVLISSDKAVNPANVMGATKRFAEMVIMN  418
            LME NP+EA++NNI+GTKNVAE+A       FV+IS+DKAVNP+NVMGATKR+AEMVI +
Sbjct  372  LMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQS  431

Query  419  LG-KISRTKFAAVRFGNVLGSRGSVIPIFKKQIEKGGPVTVTHPAMTRYFMTIPEASRLV  477
            L    S+T F AVRFGNVLGSRGSVIP+FK+QIE GGPVTVTHP MTRYFMTIPEASRLV
Sbjct  432  LNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLV  491

Query  478  IQAGALAKGRQIFVLDMGEPVKIVDLAKNLIHLSGYTTEQIPIEFSGIRPGEKMYEELLN  537
            +QAGALA+G ++FVLDMG PVKIVDLAKNLI+LSG   E+I IEFSGIRPGEK+YEELLN
Sbjct  492  LQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLN  551

Query  538  HNEVHTEQIFPKIHIGK  554
             NE+H +Q++ KI  GK
Sbjct  552  KNEIHPQQVYEKIYRGK  568

99) epsC in NC_017912


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  415 bits (1563),  Expect = 3e-117, Method: Compositional matrix adjust.
 Identities = 296/557 (54%), Positives = 416/557 (75%), Gaps = 3/557 (0%)

Query  1    MIFALDTYLVLLSVVIGYQFFEDSYHFYDSGALLLTAVSMLISHHVCAFMFHQYKQVWTY  60
            +++ +D+++V +SV +GY ++E  +  Y  + L+L++V +L+SHH+ A++F+ Y + W Y
Sbjct  12   ILIIIDSFIVTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEY  71

Query  61   TGIGELLDLLKGITLSAAVTAAVQYGVFHTILF-RLLAVSWMVQLLFIGGSRMISRVLKE  119
            ++++EL+ +LK++T S  VT  +   ++    F RL  ++WM++LL+IGGSR++ RV + 
Sbjct  72   ASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRR  131

Query  120  TIGRKQNDSSRaliigagaggtllVRQLTQKNDLGIMPVAFIDDDQTKHKLEIMG-LPVI  178
             +  +  +   +L++GAG GG++L+R++ + +D+ + PV  +DDD+ K+K+ I   + V 
Sbjct  132  YFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQ  191

Query  179  GGKESIMPAVQRLRIHHIIIAIPSLCTHELQTLYKECVQTGAHIKIMPQFDEILLGTQAA  238
            G  E I   V+++RI  IIIAIP+L    L+ + K C   G ++  MP+++++L G    
Sbjct  192  GYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEV  251

Query  239  GHIRDVKAEDLLGRKPVTLDTSKISDSIKGKTILVTGAGGSIGSEICRQISAFLPREIVL  298
             +++ V  EDLLGR PV LD + IS  +  KTILVTGAGGSIGSEICRQ+S F P+ I+L
Sbjct  252  NNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIIL  311

Query  299  LGHGENSIHSVHTELSARFGKEVLFHAEIADIQDRDKIFTLMKKYEPhvvyhaaahkhvP  358
            LGHGENSI S+H ELS  +G+ + F + IAD+Q++ +I+ +M+ + P  VYHAAAHKHVP
Sbjct  312  LGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVP  371

Query  359  LMEHNPEEAVKNNIIGTKNVAEAADMCGTETFVLISSDKAVNPANVMGATKRFAEMVIMN  418
            LME NP+EA++NNI+GTKNVAE+A       FV+IS+DKAVNP+NVMGATKR+AEMVI +
Sbjct  372  LMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQS  431

Query  419  LG-KISRTKFAAVRFGNVLGSRGSVIPIFKKQIEKGGPVTVTHPAMTRYFMTIPEASRLV  477
            L    S+T F AVRFGNVLGSRGSVIP+FK+QIE GGPVTVTHP MTRYFMTIPEASRLV
Sbjct  432  LNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLV  491

Query  478  IQAGALAKGRQIFVLDMGEPVKIVDLAKNLIHLSGYTTEQIPIEFSGIRPGEKMYEELLN  537
            +QAGALA+G ++FVLDMG PVKIVDLAKNLI+LSG   E+I IEFSGIRPGEK+YEELLN
Sbjct  492  LQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLN  551

Query  538  HNEVHTEQIFPKIHIGK  554
             NE+H +Q++ KI  GK
Sbjct  552  KNEIHPQQVYEKIYRGK  568

100) B938_16225 in NC_019842


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  415 bits (1561),  Expect = 4e-117, Method: Compositional matrix adjust.
 Identities = 297/557 (54%), Positives = 416/557 (75%), Gaps = 3/557 (0%)

Query  1    MIFALDTYLVLLSVVIGYQFFEDSYHFYDSGALLLTAVSMLISHHVCAFMFHQYKQVWTY  60
            +++ +D+++V +SV +GY ++E  +  Y  + L+L++V +L+SHH+ A++F+ Y + W Y
Sbjct  12   ILIIIDSFIVTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEY  71

Query  61   TGIGELLDLLKGITLSAAVTAAVQYGVFHTILF-RLLAVSWMVQLLFIGGSRMISRVLKE  119
            ++++EL+ +LK++T S  VT  +   ++    F RL  ++WM++LL+IGGSR++ RV + 
Sbjct  72   ASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRR  131

Query  120  TIGRKQNDSSRaliigagaggtllVRQLTQKNDLGIMPVAFIDDDQTKHKLEIMG-LPVI  178
             +  +  +   +L++GAG GG++L+R++ + +D+ + PV  +DDD+ K+K+ I   + V 
Sbjct  132  YFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQ  191

Query  179  GGKESIMPAVQRLRIHHIIIAIPSLCTHELQTLYKECVQTGAHIKIMPQFDEVLLGTQAA  238
            G  E I   V+++RI  IIIAIP+L    L+ + K C   G ++  MP++++VL G    
Sbjct  192  GYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEV  251

Query  239  GHIRDVKAEDLLGRKPVTLDTSKISDSIKGKTILVTGAGGSIGSEICRQISAFLPREIVL  298
             +++ V  EDLLGR PV LD + IS  +  KTILVTGAGGSIGSEICRQ+S F P+ I+L
Sbjct  252  NNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIIL  311

Query  299  LGHGENSIHSVHTELSARFGKEVLFHAEIADIQDRDKIFTLMKKYEPhvvyhaaahkhvP  358
            LGHGENSI S+H ELS  +G+ + F + IAD+Q++ +I+ +M+ + P  VYHAAAHKHVP
Sbjct  312  LGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVP  371

Query  359  LMEHNPEEAVKNNIIGTKNVAEAADMCGTETFVLISSDKAVNPANVMGATKRFAEMVIMN  418
            LME NP+EA++NNI+GTKNVAE+A       FV+IS+DKAVNP+NVMGATKR+AEMVI +
Sbjct  372  LMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQS  431

Query  419  LGKVSS-TKFAAVRFGNVLGSRGSVIPIFKKQIEKGGPVTVTHPAMTRYFMTIPEASRLV  477
            L   +S T F AVRFGNVLGSRGSVIP+FK+QIE GGPVTVTHP MTRYFMTIPEASRLV
Sbjct  432  LNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLV  491

Query  478  IQAGALAKGRQIFVLDMGEPVKIVDLAKNLIHLSGYTTEQIPIEFSGIRPGEKMYEELLN  537
            +QAGALA+G ++FVLDMG PVKIVDLAKNLI+LSG   E+I IEFSGIRPGEK+YEELLN
Sbjct  492  LQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLN  551

Query  538  HNEVHTEQIFPKIHIGK  554
             NE+H +Q++ KI  GK
Sbjct  552  KNEIHPQQVYEKIYRGK  568

101) epsC in NC_014551


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  414 bits (1559),  Expect = 6e-117, Method: Compositional matrix adjust.
 Identities = 297/557 (54%), Positives = 417/557 (75%), Gaps = 3/557 (0%)

Query  1    MIFALDTYLVLLSVVIGYQFFEDSYHFYDSGALLLTAVSMLISHHVCAFMFHQYKQVWTY  60
            +++ +D+++V +SV +GY ++E  +  Y  + L+L++V +L+SHH+ A++F+ Y + W Y
Sbjct  12   ILIIIDSFIVTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEY  71

Query  61   TGIGELLALLKGITLSAAVTAAVQYGVFHTILF-RLLAVSWMVQLLFIGGSRMISRVLKE  119
            ++++EL+++LK++T S  VT  +   ++    F RL  ++WM++LL+IGGSR++ RV + 
Sbjct  72   ASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRR  131

Query  120  TIGKKQNDSSraliigagaggtllarqltQKNDLGIMPVAFIDDDQTKHKLEIMG-LPVI  178
             +  +  +   +L++GAG GG++L R++ + +D+ + PV  +DDD+ K+K+ I   + V 
Sbjct  132  YFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQ  191

Query  179  GGKESILPAVQRLRIHHIIIAIPSLRTHELQTLYKECVQTGAHIKIMPQFDEILLGTQAA  238
            G  E I   V+++RI  IIIAIP+L    L+ + K C   G ++  MP+++++L G    
Sbjct  192  GYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEV  251

Query  239  GHIRDVNAEDLLGRKPVTLDTSKISDSIKGKTILVTGAGGSIGSEICRQISSFRPREIVL  298
             +++ V+ EDLLGR PV LD + IS  +  KTILVTGAGGSIGSEICRQ+S F P+ I+L
Sbjct  252  NNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIIL  311

Query  299  LGHGENSIYSVHGELSARFGKEVLFHAEIADIQDRDKIFTLMKKYEPhvvyhaaahkhvP  358
            LGHGENSIYS+H ELS  +G+ + F + IAD+Q++ +I+ +M+ + P  VYHAAAHKHVP
Sbjct  312  LGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVP  371

Query  359  LMEHNPEEAVKNNILGTKNVAEAADMCGTETFVLISSDKAVNPANVMGATKRFAEMVIMN  418
            LME NP+EA++NNILGTKNVAE+A       FV+IS+DKAVNP+NVMGATKR+AEMVI +
Sbjct  372  LMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQS  431

Query  419  LG-KISRTKFAAVRFGNVLGSRGSVIPIFKKQIAKGGPVTVTHPAMTRYFMTIPEASRLV  477
            L    S+T F AVRFGNVLGSRGSVIP+FK+QI  GGPVTVTHP MTRYFMTIPEASRLV
Sbjct  432  LNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLV  491

Query  478  IQAGALAKGRQIFVLDMGEPVKIVDLAKNLIHLSGYTTEQIPIEFSGIRPGEKMYEELLN  537
            +QAGALA+G ++FVLDMG PVKIVDLAKNLI+LSG   E+I IEFSGIRPGEK+YEELLN
Sbjct  492  LQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLN  551

Query  538  HNEVHTEQIFPKIHIGK  554
             NE+H +Q++ KI  GK
Sbjct  552  KNEIHPQQVYEKIYRGK  568

102) epsC in NC_017188


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  413 bits (1554),  Expect = 1e-116, Method: Compositional matrix adjust.
 Identities = 295/557 (53%), Positives = 416/557 (75%), Gaps = 3/557 (0%)

Query  1    MIFALDTYLVLLSVVIGYQFFEDSYHFYDSGALLLTAVSMLISHHVCAFMFHQYKQVWTY  60
            +++ +D+++V +SV +GY ++E  +  Y  + L+L++V +L+SHH+ A++F+ Y + W Y
Sbjct  12   ILIIIDSFIVTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEY  71

Query  61   TGIGELLALLKGITLSAAVTAAVQYGVFHTILF-RLLAVSWMVQLLFIGGSRMISRVLKE  119
            ++++EL+++LK++T S  VT  +   ++    F RL  ++WM++LL+IGGSR++ RV + 
Sbjct  72   ASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRR  131

Query  120  TIGKKQNDSSraliigagaggtllarqltQKNDLGIMPVAFIDDDQTKHKLEIMGLPVIG  179
             +  +  +   +L++GAG GG++L R++ + +D+ + PV  +DDD+ K+K+ I     + 
Sbjct  132  YFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQ  191

Query  180  GKKSILPA-VQRLRIHHIIIAIPSLRTHELQTLYKECVQTGAHIKIMPQFDEILLGTQAA  238
            G    +P  V+++RI  IIIAIP+L    L+ + K C   G ++  MP+++++L G    
Sbjct  192  GYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEV  251

Query  239  GHIRDVNAEDLLGRKPVTLDTSKISDSIKGKTILVTGAGGSIGSEICRQISSFRPREIVL  298
             +++ V+ EDLLGR PV LD + IS  +  KTILVTGAGGSIGSEICRQ+S F P+ I+L
Sbjct  252  NNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIIL  311

Query  299  LGHGENSIYSVHGELSARFGKEVLFHAEIADIQDRDKIFTLMKKYEPhvvyhaaahkhvP  358
            LGHGENSIYS+H ELS  +G+ + F + IAD+Q++ +I+ +M+ + P  VYHAAAHKHVP
Sbjct  312  LGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVP  371

Query  359  LMEHNPEEAVKNNILGTKNVAEAADMCGTETFVLISSDKAVNPANVMGATKRFAEMVIMN  418
            LME NP+EA++NNILGTKNVAE+A       FV+IS+DKAVNP+NVMGATKR+AEMVI +
Sbjct  372  LMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQS  431

Query  419  LG-KISRTKFAAVRFGNVLGSRGSVIPIFKKQIAKGGPVTVTHPAMTRYFMTIPEASRLV  477
            L    S+T F AVRFGNVLGSRGSVIP+FK+QI  GGPVTVTHP MTRYFMTIPEASRLV
Sbjct  432  LNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLV  491

Query  478  IQAGALAKGRQIFVLDMGEPVKIVDLAKNLIHLSGYTTEQIPIEFSGIRPGEKMYEELLN  537
            +QAGALA+G ++FVLDMG PVKIVDLAKNLI+LSG   E+I IEFSGIRPGEK+YEELLN
Sbjct  492  LQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLN  551

Query  538  HNEVHTEQIFPKIHIGK  554
             NE+H +Q++ KI  GK
Sbjct  552  KNEIHPQQVYEKIYRGK  568

103) epsC in NC_017191


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  413 bits (1554),  Expect = 1e-116, Method: Compositional matrix adjust.
 Identities = 295/557 (53%), Positives = 416/557 (75%), Gaps = 3/557 (0%)

Query  1    MIFALDTYLVLLSVVIGYQFFEDSYHFYDSGALLLTAVSMLISHHVCAFMFHQYKQVWTY  60
            +++ +D+++V +SV +GY ++E  +  Y  + L+L++V +L+SHH+ A++F+ Y + W Y
Sbjct  12   ILIIIDSFIVTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEY  71

Query  61   TGIGELLALLKGITLSAAVTAAVQYGVFHTILF-RLLAVSWMVQLLFIGGSRMISRVLKE  119
            ++++EL+++LK++T S  VT  +   ++    F RL  ++WM++LL+IGGSR++ RV + 
Sbjct  72   ASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRR  131

Query  120  TIGKKQNDSSraliigagaggtllarqltQKNDLGIMPVAFIDDDQTKHKLEIMGLPVIG  179
             +  +  +   +L++GAG GG++L R++ + +D+ + PV  +DDD+ K+K+ I     + 
Sbjct  132  YFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQ  191

Query  180  GKKSILPA-VQRLRIHHIIIAIPSLRTHELQTLYKECVQTGAHIKIMPQFDEILLGTQAA  238
            G    +P  V+++RI  IIIAIP+L    L+ + K C   G ++  MP+++++L G    
Sbjct  192  GYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEV  251

Query  239  GHIRDVNAEDLLGRKPVTLDTSKISDSIKGKTILVTGAGGSIGSEICRQISSFRPREIVL  298
             +++ V+ EDLLGR PV LD + IS  +  KTILVTGAGGSIGSEICRQ+S F P+ I+L
Sbjct  252  NNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIIL  311

Query  299  LGHGENSIYSVHGELSARFGKEVLFHAEIADIQDRDKIFTLMKKYEPhvvyhaaahkhvP  358
            LGHGENSIYS+H ELS  +G+ + F + IAD+Q++ +I+ +M+ + P  VYHAAAHKHVP
Sbjct  312  LGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVP  371

Query  359  LMEHNPEEAVKNNILGTKNVAEAADMCGTETFVLISSDKAVNPANVMGATKRFAEMVIMN  418
            LME NP+EA++NNILGTKNVAE+A       FV+IS+DKAVNP+NVMGATKR+AEMVI +
Sbjct  372  LMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQS  431

Query  419  LG-KISRTKFAAVRFGNVLGSRGSVIPIFKKQIAKGGPVTVTHPAMTRYFMTIPEASRLV  477
            L    S+T F AVRFGNVLGSRGSVIP+FK+QI  GGPVTVTHP MTRYFMTIPEASRLV
Sbjct  432  LNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLV  491

Query  478  IQAGALAKGRQIFVLDMGEPVKIVDLAKNLIHLSGYTTEQIPIEFSGIRPGEKMYEELLN  537
            +QAGALA+G ++FVLDMG PVKIVDLAKNLI+LSG   E+I IEFSGIRPGEK+YEELLN
Sbjct  492  LQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLN  551

Query  538  HNEVHTEQIFPKIHIGK  554
             NE+H +Q++ KI  GK
Sbjct  552  KNEIHPQQVYEKIYRGK  568

104) epsC in NC_018520


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  405 bits (1525),  Expect = 2e-114, Method: Compositional matrix adjust.
 Identities = 294/557 (53%), Positives = 415/557 (75%), Gaps = 3/557 (0%)

Query  1    MIIALDTYLVLNSVIAGYQFLKDSYQFYDSGallltavslllsYHVCAFLFNQYKQVWTY  60
            ++I +D+++V  SV+ GY +L   ++ Y  + L+L++V LL+S H+ A++FN Y + W Y
Sbjct  12   ILIIIDSFIVTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEY  71

Query  61   TGLGELIVLLKGITLSAAVTGVIQYAVY-HTMFFRLLTACWVLQLLSIGGTRILSRVLNE  119
            ++++EL+ +LK++T S  VT ++   +  ++ F+RL    W+++LL IGG+R++ RV   
Sbjct  72   ASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRR  131

Query  120  SIRKKRCASSRALIIGAGSGGTLMVRQLLSKDEPDIIPVAFIDDDQTKHKLEIMG-LPVI  178
             +  +      +L++GAG GG++++R++L  ++  + PV  +DDD+ K+K+ I   + V 
Sbjct  132  YFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQ  191

Query  179  GGKESIMPAVQKLKINYIIIAIPSLRTHELQVLYKECVRTGVSIKIMPHFDEMLLGTRTA  238
            G  E I   V+K++I+ IIIAIP+L    L+ + K C   GV +  MP+++++L G    
Sbjct  192  GYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEV  251

Query  239  GQIRDVKAEDLLGRKPVTLDTSEISNRIkgktvlvtgvggSIGSEICRQISAFQPKEIIL  298
             +++ V  EDLLGR PV LD + IS  +  KT+LVTG GGSIGSEICRQ+S F+P+ IIL
Sbjct  252  NNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIIL  311

Query  299  LGHGENSIHSIYTELNGRFGKHIVFHTEIADVQDRDKMFTLMKKYEPhvvyhaaahkhvP  358
            LGHGENSI SI  EL+  +G++I F   IADVQ++ +++ +M+ + P  VYHAAAHKHVP
Sbjct  312  LGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVP  371

Query  359  LMEHNPEEAVKNNIIGTKNVAEAADMSGTETFVLISSDKAVNPANVMGATKRFAEMIIMN  418
            LME NP+EA++NNI+GTKNVAE+A  +    FV+IS+DKAVNP+NVMGATKR+AEM+I +
Sbjct  372  LMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQS  431

Query  419  LG-KVSRTKFVAVRFGNVLGSRGSVIPIFKKQIEKGGPVTVTHPAMTRYFMTIPEASRLV  477
            L    S+T FVAVRFGNVLGSRGSVIP+FK+QIE GGPVTVTHP MTRYFMTIPEASRLV
Sbjct  432  LNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLV  491

Query  478  IQAGALAKGRQIFVLDMGEPVKIVDLAKNLIHLSGYTTEQVPIEFTGIRPGEKMYEELLN  537
            +QAGALA+G ++FVLDMG PVKIVDLAKNLI+LSG   E++ IEF+GIRPGEK+YEELLN
Sbjct  492  LQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLN  551

Query  538  KNEVHAEQIFPKIHIGK  554
            KNE+H++Q++ KI  GK
Sbjct  552  KNEIHPQQVYEKIYRGK  568

105) Desor_5339 in NC_016584


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  405 bits (1522),  Expect = 5e-114, Method: Compositional matrix adjust.
 Identities = 279/580 (49%), Positives = 414/580 (72%), Gaps = 27/580 (4%)

Query  6    RTLILMLIDAMLINLAAFGSFYLRFEEGIPLDYYQTY----YQTAIGGTILYLAVF-YVF  60
            R LIL++ID+ ++ ++ F ++      +I   Y++ Y       +    ++   +F YVF
Sbjct  9    RFLILIIIDSFIVTFSVFLGY------AILEPYFKGYSIDLLVLSSVILLVSHHIFAYVF  62

Query  61   GLYNRLWQYASTGELLSIIYavsvgtggtvaavYFYGLSNAANLPYIRMPHTAAIILWLA  120
             LY+R W+YAS +EL+S++ AV+ +   T+  V        ++ P++R+     +I W+ 
Sbjct  63   NLYHRAWEYASVSELMSVLKAVTSSIVVTLLLV----SLLISESPFLRL----YFITWMM  114

Query  121  MVFLIGGSRFIWRILQENTYDRHVPGSQKQVLIVGAGDAGVLAARE-LKNRNYRDGRPVG  179
             ++LIGGSR++WR+ +   Y  + +  +K  L+VGAG++G +  RE L++++ R  +PV 
Sbjct  115  HLLLIGGSRLFWRVYR--RYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMR-MQPVL  171

Query  180  FIDDNHSKQNLHLLG-IPVLGTRKDIARIVKGHNINEVIIAMPSASGESVREIVQICEKS  238
             +DD+ +KQ++ +   + V G   DI+ +VK   I+ +IIA+P+ S   + EI +IC+  
Sbjct  172  AVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIE  231

Query  239  GVQLKIMPGVYDIISGDINVTPIREVQVEDLLGRDPVSVDLEEVAGYVAGETVLVTGAGG  298
            GV+L  MP + D++SG+++V  ++ V+VEDLLGRDPV +D+  ++  ++  T+LVTGAGG
Sbjct  232  GVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGG  291

Query  299  SIGSEICRQIARFNPGKLVLLGHGENSIFDIEQELRGEHPG-IDYITEILDIKDREKVFL  357
            SIGSEICRQ+++F+P K++LLGHGENSI+ I+QEL       I+++  I D++++ +++ 
Sbjct  292  SIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILE  351

Query  358  IFNRYKPGVVFHAAAHKHVPLMERNPEEALKNNVVGTQNLAEAADEVKVKTFVAISTDKA  417
            + N +KP  V+HAAAHKHVPLME NP+EA++NN++GT+N+AE+A E  V  FV ISTDKA
Sbjct  352  VMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKA  411

Query  418  VNPTSVMGATKRTAEMLIQSL-DLRSQTKFVAVRFGNVLGSRGSVIPTFKRQIAQGGPVT  476
            VNP++VMGATKR AEM+IQSL +  S+T FVAVRFGNVLGSRGSVIP FK QI  GGPVT
Sbjct  412  VNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVT  471

Query  477  VTHPDMVRYFMTIPEASQLVIQAGAMGNGGEIFILDMGKPVKIVDLAKDLIRLSGFEPDV  536
            VTHP+M RYFMTIPEAS+LV+QAGA+++GGE+F+LDMGKPVKIVDLAK+LIRLSG   + 
Sbjct  472  VTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEE  530

Query  537  DIKIQFTGIRPGEKLFEELLTAEEGVTSTKHSRIFVAKPN  576
            DI I+F+GIRPGEKL+EELL  +E        +I+ +K +
Sbjct  531  DIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVD  570

106) STP_0902 in NC_015558


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  401 bits (1509),  Expect = 5e-113, Method: Compositional matrix adjust.
 Identities = 261/476 (55%), Positives = 366/476 (77%), Gaps = 8/476 (1%)

Query  118  PRMIWRMWHEQNLFVKHNKKDQKTKMLVVGAGEGGSAFIQTILNKS--Kdidivgivdad  175
            +R++WR+ +    F+ +    +K   LVVGAG+GGS +I+ +L     +   ++++ D  
Sbjct  122  SRLFWRVYR--RYFIDNA--VEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDK  177

Query  176  iNKLGTYLHGIKVLGNKNSIPRLLAEYEVKQVTIAIPSLSGEERESILDICRNANVHVNN  235
             ++  T  + +KV G  + IP L+  + +K++ IAIP+LS    + I  IC    V++ +
Sbjct  178  NKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFK  237

Query  236  MPSIENIVLGNVSLNKFKEIEIADLLGRKEVVLDQTSLNSFFNGKTVLVTGAGGSIGSEI  295
            MP+IE+++ G++ +N++K +E+ DLLGR  V LD + ++  +  KT+LVTGAGGSIGSEI
Sbjct  238  MPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEI  297

Query  296  CRQVSKFNPARILLLGHGENSIYLIHRELSALLKGRIDIVPIIADIQDRDLIFEIMANYR  355
            CRQVSKF+P +I+LLGHGENSIY IH+ELS     RI++VP+IAD+Q++  I+E+M +++
Sbjct  298  CRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFK  357

Query  356  PDIVYHAAAHKHVPLMEYNPKEAVKNNIFGTKNVAEAAKAAGIPKFIMVSTDKAVNPPNV  415
            P  VYHAAAHKHVPLMEYNP EA++NNI+GTKNVAE+AK + ++KF+M+STDKAVNP+NV
Sbjct  358  PYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNV  417

Query  416  MGATKRFAEMIVTGLNEE-GKTQFAAVRFGNVLGSRGSVVPLFKEQIKKGGPITVTDFRM  474
            MGATKR+AEM++ +LNE+ +KT F AVRFGNVLGSRGSV+PLFK+QI  GGP+TVT+  M
Sbjct  418  MGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEM  477

Query  475  TRYFMTIPEASRLVIQAGFLAKGGEVFVLDMGEPVKILDLAKKVIKLSGHTEEDIKIVES  534
            TRYFMTIPEASRLV+QAG LA+GGEVFVLDMG PVKI+DLAK++I+LSG  EEDI I  S
Sbjct  478  TRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFS  537

Query  535  GIRPGEKLYEELLSSNERVSEQIHDKIFVGKVTSKPLAEVEAIISNL-DQLPTDNL  589
            GIRPGEKLYEELL+ NE  ++Q+ +KI+ GKV     +EV+ I+ +L ++++ ++L
Sbjct  538  GIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKL  593

107) Desmer_4340 in NC_018515


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  397 bits (1495),  Expect = 7e-112, Method: Compositional matrix adjust.
 Identities = 271/581 (47%), Positives = 413/581 (72%), Gaps = 27/581 (4%)

Query  6    RTLILMLIDALLINLAAFGSFYLRFDEGIPLDYYQTY----YHTAIGGTILYLAVF-YVF  60
            R LIL++ID++++ ++ F ++      +I   Y++ Y       +    ++   +F YVF
Sbjct  9    RFLILIIIDSFIVTFSVFLGY------AILEPYFKGYSIDLLVLSSVILLVSHHIFAYVF  62

Query  61   GLYNRLWQYASTGELLSIvyavsvgtggtvaavyFYGLSNADTLSYIRMPHTAAVLLWLA  120
             LY+R W+YAS +EL+S++ AV+ +   T+  V           +++R+   +    W+ 
Sbjct  63   NLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVS----LLISESPFLRLYFIT----WMM  114

Query  121  MVFLIGGSRFIWRILQENAFDRHVPGSQKQVLIVGAGDAGVLAARE-LKNRNYRDGRPIG  179
             ++LIGGSR++WR+ +   +D  V   +K  L+VGAG++G +  RE L++++ R  +P+ 
Sbjct  115  HLLLIGGSRLFWRVYRRYFIDNAV--EKKATLVVGAGQGGSVLIREMLRSQDMR-MQPVL  171

Query  180  FIDDNHSKQKLQLLG-IPVLGTRLDIARVVKGHNVDEVIIAMPSASGEAVREIVQICEKL  238
             +DD+ +KQK+ +   + V G   DI+ +VK   +  +IIA+P+ S   + EI +IC+  
Sbjct  172  AVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIE  231

Query  239  GVILKIMPGVYDIISGDMNVKPIRQVQVEDLLGRDPVSVDLEEVAGYVAGETVIITGAGG  298
            GV L  MP + D++SG+++V+ +++V+VEDLLGRDPV +D+  ++  ++  T+++TGAGG
Sbjct  232  GVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGG  291

Query  299  SIGSEICRQIARFNPGRLVLLGHGENTIFDIEQELRSEHPG-IDYITEILDIKDREKVFL  357
            SIGSEICRQ+++F+P +++LLGHGEN+I+ I+QEL       I+++  I D++++ +++ 
Sbjct  292  SIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILE  351

Query  358  IFERYKPGVVFHAAAHKHVPLMERNPEEALKNNVVGTQNLAEAADEVKVKTFVSISTDKA  417
            + + +KP  V+HAAAHKHVPLME NP+EA++NN++GT+N+AE+A E  V  FV ISTDKA
Sbjct  352  VMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKA  411

Query  418  VNPTSVMGATKRTSEMIIQSL-DLRSQTKFVAVRFGNVLGSRGSVIPTFKRQIAQGGPVT  476
            VNP++VMGATKR +EM+IQSL +  S+T FVAVRFGNVLGSRGSVIP FK QI  GGPVT
Sbjct  412  VNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVT  471

Query  477  VTHPDMVRYFMTIPEAAQLVIQAGAMARGGEIFILDMGKPVKIVDLAKDLIRLSGFEPDV  536
            VTHP+M RYFMTIPEA++LV+QAGA+A+GGE+F+LDMGKPVKIVDLAK+LIRLSG   + 
Sbjct  472  VTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEE  530

Query  537  DIKIQFTGIRPGEKLFEELLTAEEGVTSTKHSRIFVAKPNN  577
            DI I+F+GIRPGEKL+EELL  +E        +I+ +K ++
Sbjct  531  DIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDH  571

108) I872_09825 in NC_021175


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  395 bits (1486),  Expect = 3e-111, Method: Compositional matrix adjust.
 Identities = 271/505 (54%), Positives = 389/505 (78%), Gaps = 16/505 (3%)

Query  78   RFLLLSCMFSILFTMSIRLCWRMWFSFKNGTTYTEVEESKVSRTLVVGAGDGGSLFIKTA  137
            R+ +++ M  +L+  + RL WR+   +     + +    K + TLVVGAG+GGS++I+  
Sbjct  106  RLYFITWMMHLLLIGGSRLFWRVYRRY-----FIDNAVEKKA-TLVVGAGQGGSVLIREM  159

Query  138  LKESPELKIIAV--VDSDTSKQG-SFLHGVKVVGTDKQIPEIVANYEISQIVLAIPSLKP  194
            L+ S ++++ +V  VD D +KQ  ++ + VKV G   +IPE+V ++ I +I++AIP+L  
Sbjct  160  LR-SQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQ  218

Query  195  DEYEQIFSLCKKTGAKVSAMPKYEEVVTGKLKVHKLREIDIADLLGRKEVRLDQTSLQSN  254
               ++I  +C+  G  +  MP+ E+V++G L V++L+ +++ DLLGR  V LD + +  +
Sbjct  219  KRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRE  278

Query  255  IDGKTILVTGAGGSIGSELCRQIARFSPARLLLLGHGENSIYLIHKELLAQYGDKVEIVP  314
            +  KTILVTGAGGSIGSE+CRQ+++F P +++LLGHGENSIY IH+EL   YG+++E+VP
Sbjct  279  LTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVP  338

Query  315  LIADIQDRERIFHIMHEYQPDRVYHAAAHKHVPLMEYNPTEAVKNNIYGTknvaeaakaa  374
            +IAD+Q++ RI+++M+E++P  VYHAAAHKHVPLMEYNP EA++NNI GTKNVAE+AK +
Sbjct  339  VIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEG  398

Query  375  gvakfvmvSTDKAVNPPNVMGATKRVAEMIVTSLNEE-GKTLFAAVRFGNVLGSRGSVVP  433
             V+KFVM+STDKAVNP+NVMGATKR+AEM++ SLNE+ +KT F AVRFGNVLGSRGSV+P
Sbjct  399  EVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIP  458

Query  434  LFKEQIANGGPITVTDFRMTRYFMTIPEASRLVIQAGALMHGGEIFVLDMGEPVKILDLA  493
            LFK+QI +GGP+TVT+  MTRYFMTIPEASRLV+QAGAL +GGE+FVLDMG PVKI+DLA
Sbjct  459  LFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLA  518

Query  494  KKMITLSGHTEEEIQIVEAGIRPGEKLYEELLSTEERVDEQIYEKIFVGNVQALPNSEVT  553
            K++I LSG  EE+I I  +GIRPGEKLYEELL+ +E   +Q+YEKI+ G+V+   ++EV 
Sbjct  519  KNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVD  578

Query  554  AFVDS-ISKLDGAELKAKLIKFAQQ  577
             +V+  I+++     K KL+K+A++
Sbjct  579  LIVEDLINNFS----KEKLLKIANR  599

109) Exig_2634 in NC_010556


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  395 bits (1485),  Expect = 4e-111, Method: Compositional matrix adjust.
 Identities = 271/521 (53%), Positives = 383/521 (74%), Gaps = 20/521 (3%)

Query  64   KLYRVNWKYASVQEAMTlslslglssiglMVYQNIIFNEV-LERITILSFCIALLLLGAI  122
            +LY+  W YASV E M++  ++  S +  ++  +++++E  + R+ +++  + LLL+G+ 
Sbjct  63   NLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGS  122

Query  123  RVALRLLGIGQHLRKYALPRRMVKSRKRTLVIGAGRAGRSLVRQLYVSPFHELKPVAFLD  182
            R+  R+       R+Y +   +   +K TLV+GAG++G  L+R++  S    ++PV  +D
Sbjct  123  RLFWRVY------RRYFIDNAV--EKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVD  174

Query  183  DDPKNMHFMI-QGIEVVGTTEDLKAVIEKHRIEAIVLAIPSLTQQRRIELITEAKTLCK-  240
            DD ++    I + + V G  ED+  ++ K RI  I++AIP+L+Q+R    + E + +C+ 
Sbjct  175  DDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKR----LNEINKICNI  230

Query  241  -NVQ--TLPMIEELITGKISVSAIRDVSIEDLLGREPVELDISGIKSEIEGRTVLVTGAG  297
              V+   +P IE++++G + V+ ++ V +EDLLGR+PVELD++ I  E+  +T+LVTGAG
Sbjct  231  EGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAG  290

Query  298  GSIGSEICRQIIQFNPTTLVLLGHGENSIYLIEREL-RGLQFPINLVSIIADVQDRTRLE  356
            GSIGSEICRQ+ +F+P  ++LLGHGENSIY I++EL +     I++V++IADVQ++TR+ 
Sbjct  291  GSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRIL  350

Query  357  EVFATHKPQVVFHAAAHKHVPLMEANPYESVKNNVYGTKNVAEVADLFNVERFVMISTDK  416
            EV    KP  V+HAAAHKHVPLME NP E+++NN+ GTKNVAE A   +V +FVMISTDK
Sbjct  351  EVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDK  410

Query  417  AVNPTNVMGSTKRIAEMVIQDLGR-RSKTKFAVVRFGNVLGSRGSVIPLFKSQILAGGPV  475
            AVNP+NVMG+TKRIAEMVIQ L    SKT F  VRFGNVLGSRGSVIPLFK+QI +GGPV
Sbjct  411  AVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPV  470

Query  476  TVTHPEMTRFFMTIPEASRLVIQAGILADGGEVFVLDMGEPVKIVDLAKNMIELSGFTED  535
            TVTHPEMTR+FMTIPEASRLV+QAG LA+GGEVFVLDMG PVKIVDLAKN+I LSG  E+
Sbjct  471  TVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEE  530

Query  536  EMPIVFSGIRPGEKMYEELLKDGEVDPEAIYPKIFVGRTRQ  576
            ++ I FSGIRPGEK+YEELL+  E++P+ +Y KI+ G+  +
Sbjct  531  DIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDH  571

110) SUB1039 in NC_012004


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  393 bits (1480),  Expect = 1e-110, Method: Compositional matrix adjust.
 Identities = 262/483 (55%), Positives = 367/483 (76%), Gaps = 7/483 (1%)

Query  105  RFIFLTYLFSTFLVVLPRMSWRMWHDLNPRYRkdkekqkkkVLVVGAGEGGSVFIQTIIN  164
            R+ F+T +   +L+  +R+ WR+ +    RY  D+  +KK  LVVGAG+GGSV+I+ ++ 
Sbjct  106  RLYFITWMMHLLLIGGSRLFWRVYR----RYFIDNAVEKKATLVVGAGQGGSVLIREMLR  161

Query  165  KS--KdvdiigivdsdvNKFGTYLHGIKVLGNKHSIPRIVADYEVDQVTIAIPSLSGEER  222
                +   ++++ D   ++  T  + +KV G  + IP +V  + + ++ IAIP+LS    
Sbjct  162  SQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRL  221

Query  223  ESILDICQQANVPVNNMPSIENIVLGNISLNKYKEIDIADLLGRKEVVLDQSSLLDYFRD  282
            + I  IC+   V + +MP+IE+++ G++ +N+ K +++ DLLGR  V LD + +   + +
Sbjct  222  NEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTN  281

Query  283  KTVLVTGAGGSIGSEICRQVSKFAPKRLLLLGHGENSIYLIHRELSSKYRESIQVIPIIA  342
            KT+LVTGAGGSIGSEICRQVSKF P++++LLGHGENSIY IH+ELS  Y + I+ +P+IA
Sbjct  282  KTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIA  341

Query  343  DIQDRDLMFKVMHEYKPDVVYHAAAHKHVPLMEYNPREAVKNNIFGTKNVAEAAKAAGIP  402
            D+Q++  ++ VM+E+KP  VYHAAAHKHVPLMEYNP+EA++NNI+GTKNVAE+AK + ++
Sbjct  342  DVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVS  401

Query  403  KFVMVSTDKAVNPPNVMGATKRFAEMIVTGLNE-PGKTQFAAVRFGNVLGSRGSVVPLFK  461
            KFVM+STDKAVNP+NVMGATKR+AEM++ +LNE  +KT F AVRFGNVLGSRGSV+PLFK
Sbjct  402  KFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFK  461

Query  462  EQIKKGGPITVTDFRMTRYFMTIPEASRLVIQAGYLAKGGEVFVLDMGEPVRILDLAKKI  521
            +QI  GGP+TVT+  MTRYFMTIPEASRLV+QAG LA+GGEVFVLDMG PV+I+DLAK++
Sbjct  462  NQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNL  521

Query  522  IKLSGHTEEDIQIVESGIRPGEKLYEELLSTSERVQEQIHDKIFVGRVTSKPLEEVEEII  581
            I+LSG  EEDI I  SGIRPGEKLYEELL+ +E   +Q+ +KI+ G+V      EV+ I+
Sbjct  522  IRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIV  581

Query  582  NHL  584
            ++L
Sbjct  582  EDL  584

111) Dtox_4081 in NC_013216


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  393 bits (1478),  Expect = 1e-110, Method: Compositional matrix adjust.
 Identities = 254/514 (50%), Positives = 384/514 (75%), Gaps = 13/514 (2%)

Query  56   VFFYFFGLYQRVWAYASIGELVTIVKAVTTGKLVVIALTYFIF--TPLPRSVVLMSWAFS  113
            +F Y F LY+R W YAS++EL++++KAVT++ +V + L  +++  +P+ R + +++W   
Sbjct  57   IFAYVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLR-LYFITWMMH  115

Query  114  IILIGGSRLCWRIYVQKKKFAVAGCPLDKRKTLIVGAGDAGVLVVRELM-NHNSEYLPVG  172
            ++LIGGSRL WR+Y   +++ +   +++K+ TL+VGAG++G +++RE++ +++    PV 
Sbjct  116  LLLIGGSRLFWRVY---RRYFIDN-AVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVL  171

Query  173  FIDDDASKQGMVILG-IPVLGKREELPSIIEKYRIKEVIIAMPSVSGQVIKETVEKCHNS  231
             +DDD +KQ M I   + V G  E++P ++ K+RIK +IIA+P++S + ++E    C+  
Sbjct  172  AVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIE  231

Query  232  QVKLKILPGVYQLISGQVTVNHIRDIQVEDLLGREPVEVDLSEIAGYLTDRVVLVSGAGG  291
             V L  +P + +++SG++ VN+++ ++VEDLLGR+PVE+D++ I+  LT++ +LV+GAGG
Sbjct  232  GVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGG  291

Query  292  SIGSELCRQVVRFKPKLLVVLGHGENSIHNIVFELREMHGSDLPIEIVIADIRDRQKINL  351
            SIGSE+CRQV +F P+ +++LGHGENSI +I  EL    G+ + +  VIAD++++ +I  
Sbjct  292  SIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILE  351

Query  352  IFKKYRPSVVFHAAAHKHVPLMELHPDESVKTNVLGTKNLAEAADRVGTDVFIMLSTDKA  411
            + + ++P  V+HAAAHKHVPLME +P+E+++ N+LGTKN+AE+A       F+M+STDKA
Sbjct  352  VMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKA  411

Query  412  VNPSSVMGATKRLAELILQQMN-SISDTVYAAVRFGNVLGSNGSVVPIFKRQIAQGGPVT  470
            VNPS+VMGATKR+AE+++Q +N   S T + AVRFGNVLGS GSV+P+FK QI  GGPVT
Sbjct  412  VNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVT  471

Query  471  VTHPEMKRYFMTIPEAVQLVIQAGAMAQGGEIFVLDMGEPVKIVDLAKCIIDLSG---VD  527
            VTHPEM RYFMTIPEA +LV+QAGA+AQGGE+FVLDMG PVKIVDLAK +I LSG    D
Sbjct  472  VTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEED  531

Query  528  CEIKFTGIRPGEKLFEELLTAEEGSSATRHRRIF  561
              I F+GIRPGEKL+EELL  +E  +     +I+
Sbjct  532  IGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIY  565

112) EHR_08910 in NC_018081


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  392 bits (1473),  Expect = 4e-110, Method: Compositional matrix adjust.
 Identities = 274/526 (53%), Positives = 396/526 (76%), Gaps = 10/526 (1%)

Query  57   YGSLFKVFTRINRYMNLEEIRAIF--VSLSITMISNLFVLFFINHQYMLRLTIFTYILSL  114
            ++ +F+++ R   Y ++ E+ +++  V+ SI +   L  L++ +  + LRL ++T ++ L
Sbjct  58   FAYVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPF-LRLYFITWMMHL  116

Query  115  LLIMGSRLEWRLYIEKKQTKLQPRATAKKTIIVGAGEGGRILANILLGSKTASDTYVIGF  174
            LLI GSRL WR+Y   ++  ++     K T++VGAG+GG +L   +L S+      V++ 
Sbjct  117  LLIGGSRLFWRVY---RRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLA-  172

Query  175  VDDDPNKQNTYLSGK-KVIGMIKDLPALIKKHDVQIVTIAIPSLSKTKIRNIFQMVESLH  233
            VDDD NKQ+  ++ + KV G + D+P L+KK  ++ + IAIP+LS+ ++ +I ++ +   
Sbjct  173  VDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEG  232

Query  234  VKVNTMPSMEEIASGKVSVTKLKKIDVVDLLERDEVELDIESIKGHLTGKTILVTGAGGS  293
            V +  MP++E++ SG + V +LKK++V DLL RD VELD+  I  +LT KTILVTGAGGS
Sbjct  233  VELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGS  292

Query  294  IGSEICRQIIQFSPAQLLLVGHGENSIYLIDRELRMNQQNQQTKIVPLIADIQDRDKINE  353
            IGSEICRQ+ +F P +++L+GHGENSIY I++EL      ++  +VP+IAD+Q++ +I E
Sbjct  293  IGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTY-GNRIEFVPVIADVQNKTRILE  351

Query  354  IMQNYRPDIVYHAAAHKHVPLMEVNPKEAVKNNILGTKNVAEAAKQAKVKNFVMVSTDKA  413
            +M++++P  VYHAAAHKHVPLME NP EA++NNILGTKNVAE+AK++ V +FVM+STDKA
Sbjct  352  VMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKA  411

Query  414  NHPPNVMGATKRIAEMIVTGLNEKNG-TTFSAVRFGNVLGSRGSVIPVFREQIAQGGPVT  472
             +P+NVMGATKRIAEM++ +LNE N+ T+F AVRFGNVLGSRGSVIP+F++QI  GGPVT
Sbjct  412  VNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVT  471

Query  473  ITDFRMTRYFMTIPEASRLVIQSGVLAKGGEIFILDMGEPVKIVNLAKNMIRLSGYREDE  532
            +T+  MTRYFMTIPEASRLV+Q+G LA+GGE+F+LDMG PVKIV+LAKN+IRLSG +E++
Sbjct  472  VTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEED  531

Query  533  IEILETGIRPGeklyeellldkeRNDEAVYEKIFVGNIKGYSNQKV  578
            I I  +GIRPGEKLYEELL  +E + + VYEKI+ G++  Y +  V
Sbjct  532  IGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEV  577

113) DSY3347 in NC_007907


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  392 bits (1473),  Expect = 4e-110, Method: Compositional matrix adjust.
 Identities = 270/597 (46%), Positives = 418/597 (71%), Gaps = 49/597 (8%)

Query  6    RTLLLMVIDAVLINLAVFLSF-----YIR-FAVDGDGTIPEEYLLTLTHSAWTATLIYLS  59
            R L+L++ID+ ++ ++VFL++     Y++ +++D     +    L ++H   +       
Sbjct  9    RFLILIIIDSFIVTFSVFLGYAILEPYFKGYSIDLLVLSSVI--LLVSHHIFA-------  59

Query  60   VFYIFGLYNKLWQYASIGELISiifavtvaaagtitvv------------YFIAPMRFPH  107
              Y+F LY++ W+YAS++EL+S++ AVT +   T+ +V            YFI+      
Sbjct  60   --YVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFIT------  111

Query  108  TVSALMWFSTLFLIGGSRFIWRILQDNIFTPHVPGSQNQVLIIGAGDAGVMAARE-LKNK  166
                  W   L+LIGGSR++WR+ +  ++   V   ++  L++GAG++G +  RE L+++
Sbjct  112  ------WMMHLLLIGGSRLFWRVYRRYFIDNAV--EKKATLVVGAGQGGSVLIREMLRSQ  163

Query  167  NYREGRPVGYIDDAATKQRLQLMG-IPVLGTRRDIPRVVKNHNIDKIIIAMPSASGDVIR  225
            + R  +PV  +DD   KQ++ +   + V G   DIP +VK+  I KIIIA+P+ S   + 
Sbjct  164  DMRM-QPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLN  222

Query  226  EIVGICEKTGVDLKIMPGVFDVVSGKVDTKEIRQVQVEDLLGREAVTVDLEDVAGYLTGE  285
            EI  IC+  GV+L  MP + DV+SG ++ +++++V+VEDLLGR++V +D+  ++  LT  
Sbjct  223  EINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNK  282

Query  286  AVLITGGGGSIGSELCRQVARFNPAKLVIVGHGENSVFDIEQEL-RSENPGLDVVTEILD  344
            ++L+TG+GGSIGSE+CRQV++F+P K++++GHGENS++ I+QEL ++    ++ V  I D
Sbjct  283  TILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIAD  342

Query  345  IKDREKVHLVFQRYKPGVVFHAAAHKHVPLMEKNPEEAMKNNIMGTSNLAEAADAAKVKT  404
            ++++ ++  V + +KP  V+HAAAHKHVPLME NP+EA++NNI+GT N+AE+A  + V  
Sbjct  343  VQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSK  402

Query  405  FVLISTDKAVNPTSIMGATKRVAEMVIQSM-DKRSDTKYVAVRFGNVLGSRGSVIPTFKR  463
            FV+ISTDKAVNP+++MGATKR+AEMVIQS+ +  S T +VAVRFGNVLGSRGSVIP FK 
Sbjct  403  FVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKN  462

Query  464  QIAKGGPVTVTHPDMVRYFMTIPEASQLVIQAGSMAQGGEIFILDMGQPVKILDLARDLI  523
            QI  GGPVTVTHP+M RYFMTIPEAS+LV+QAG++AQGGE+F+LDMG+PVKI+DLA++LI
Sbjct  463  QIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLI  522

Query  524  RLSGFEPDVDIKIKFTGMRPGEKLFEELLTAEEGTSATKHKRIFVAKPNNINVSQLE  580
            RLSG   + DI I F+G+RPGEKL+EELL  +E  +     +I+ +K ++   ++++
Sbjct  523  RLSG-KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVD  578

114) Desde_3866 in NC_018017


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  391 bits (1471),  Expect = 5e-110, Method: Compositional matrix adjust.
 Identities = 260/535 (49%), Positives = 385/535 (72%), Gaps = 32/535 (5%)

Query  52   YVFGLYNKLWQYASIGELLSIIFavtvatagtvtmv------------YFIAPMRFPHTV  99
            YVF LY++ W+YAS++EL+S++ AVT +   T+ +V            YFI+        
Sbjct  60   YVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFIT--------  111

Query  100  SALMWFSTLFLIGGSRFIWRILQDNIFTPHVPGSQNQVLIIGAGDAGVMAARE-LKNKNY  158
                W   L+LIGGSR++WR+ +  ++   V   ++  L++GAG++G +  RE L++++ 
Sbjct  112  ----WMMHLLLIGGSRLFWRVYRRYFIDNAV--EKKATLVVGAGQGGSVLIREMLRSQDM  165

Query  159  REGRPVGYIDDAATKQRLQLMG-IPVLGTRKDIPRVVKNHNIDKIIIAMPSVSGEIIREI  217
            R  +PV  +DD   KQ++ +   + V G   DIP +VK+  I KIIIA+P++S   + EI
Sbjct  166  RM-QPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEI  224

Query  218  VGICEKTGVDLKIMPGVFDVVSGKVDTTEIRQVQVEDLLGREPVTVDLEDVAGYLTGEVV  277
              IC+  GV+L  MP + DV+SG ++  ++++V+VEDLLGR+PV +D+  ++  LT   +
Sbjct  225  NKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTI  284

Query  278  LITGGGGSIGSELCRQVTRFNPAKLVIVGHGENSVFDIEQEL-RSENPSLDVVTEILDIK  336
            L+TG+GGSIGSE+CRQV++F+P K++++GHGENS++ I+QEL ++    ++ V  I D++
Sbjct  285  LVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQ  344

Query  337  DQEKVHIVFQRYKPGVVFHAAAHKHVPLMEKNPEEALKNNVMGTSNLAEAADAVKVKTFV  396
            ++ ++  V + +KP  V+HAAAHKHVPLME NP+EA++NN++GT N+AE+A    V  FV
Sbjct  345  NKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFV  404

Query  397  LISTDKAVNPTSIMGATKRVAEMVIQSM-DRRSDTKYVAVRFGNVLGSRGSVIPTFKRQI  455
            +ISTDKAVNP+++MGATKR+AEMVIQS+ +  S T +VAVRFGNVLGSRGSVIP FK QI
Sbjct  405  MISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQI  464

Query  456  AKGGPVTVTHPDMVRYFMTIPEASQLVIQAGSMAQGGEIFILDMGQPVKILDLARDLIRL  515
              GGPVTVTHP+M RYFMTIPEAS+LV+QAG++AQGGE+F+LDMG+PVKI+DLA++LIRL
Sbjct  465  ESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRL  524

Query  516  SGFEPEVDIKIKFTGMRPGEKLFEELLTAEEGTSATKHKRIFVAKPNNINVSQLE  570
            SG   E DI I F+G+RPGEKL+EELL  +E  +     +I+ +K ++   ++++
Sbjct  525  SG-KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVD  578

115) Desaci_4450 in NC_018068


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  391 bits (1471),  Expect = 6e-110, Method: Compositional matrix adjust.
 Identities = 280/579 (49%), Positives = 419/579 (73%), Gaps = 29/579 (5%)

Query  6    RTLILMLIDALLINLAAFGSFYLRFEIFGHIPSQYYQTYYHTAITATILYIA----VF-Y  60
            R LIL++ID++++ ++ F    L + I+      Y++ Y    +  + + +     +F Y
Sbjct  9    RFLILIIIDSFIVTFSVF----LGYAILE----PYFKGYSIDLLVLSSVILLVSHHIFAY  60

Query  61   IFGLYNRLWQYASTGELLSIIYavtvgtggtvavvYCYSLFVTKVP-LRMPNSAAVLLWL  119
            +F LY+R W+YAS +EL+S++ AVT +   T+ +V   SL+++  P LR+      + W+
Sbjct  61   VFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLV---SLLISESPFLRL----YFITWM  113

Query  120  VMVFLIGGSRFIWRILQENVFDRHVPGSQKQVLIVGAGDAGVLAARE-LKNRNYRDGRPI  178
            + ++LIGGSR++WR+ +   +D  V   +K  L+VGAG++G +  RE L++++ R  +P+
Sbjct  114  MHLLLIGGSRLFWRVYRRYFIDNAV--EKKATLVVGAGQGGSVLIREMLRSQDMR-MQPV  170

Query  179  GFIDDNRQKQKLQLLG-IPVLGTRKDITRIVKGHNIDEVIIAMPSASGESVREIVQICEK  237
              +DD+++KQK+ +   + V G   DI  +VK   I  +IIA+P+ S   + EI +IC+ 
Sbjct  171  LAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNI  230

Query  238  SGVDLKIMPGVYDIISGDINVKPIRQIQVEDLLGRDPVSVDLEEVAGYVSGETVFITGAG  297
             GV+L  MP + D++SG+++V+ +++++VEDLLGRDPV +D+  ++  ++  T+++TGAG
Sbjct  231  EGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAG  290

Query  298  GSIGSELSRQVAKFNPGKLILIGHGENSIFEIEQEL-RAERPGIEYITEILDIKDREKVF  356
            GSIGSE+ RQV+KF+P K+IL+GHGENSI+ I+QEL ++    IE++  I D++++ +++
Sbjct  291  GSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRIL  350

Query  357  LVFNRYKPGVVFHAAAHKHVPLMERNPEEALKNNVLGTQNLAEAADEYRVKTFVSISTDK  416
             V N +KP  V+HAAAHKHVPLME NP+EA++NN+LGT+N+AE+A E  V  FV ISTDK
Sbjct  351  EVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDK  410

Query  417  AVNPTSIMGATKRTVELMIQSL-DRRSQTKFVAVRFGNVLGSNGSVIPTFKKQIAKGGPV  475
            AVNP+++MGATKR  E++IQSL +  S+T FVAVRFGNVLGS GSVIP FK+QI  GGPV
Sbjct  411  AVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPV  470

Query  476  TVTHPDMVRYFMTIPEAAQLVIQAGAMAQGGEIFILDMGKPVKILDLAKDLIRLSGFEPD  535
            TVTHP+M RYFMTIPEA++LV+QAGA+AQGGE+F+LDMGKPVKI+DLAK+LIRLSG   +
Sbjct  471  TVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKE  529

Query  536  VDIKIQFTGIRPGEKLYEELLTAEEGITSTKHSRIFVAK  574
             DI I+F+GIRPGEKLYEELL  +E        +I+ +K
Sbjct  530  EDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGK  568

116) Desdi_3238 in NC_019903


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  391 bits (1470),  Expect = 6e-110, Method: Compositional matrix adjust.
 Identities = 255/535 (48%), Positives = 386/535 (73%), Gaps = 32/535 (5%)

Query  52   YIFGLYNKLWQYASIGELVSIIFavtvgtagtvaL------------VYFLAPLRFPHSV  99
            Y+F LY++ W+YAS++EL+S++ AVT +   T+ L            +YF++        
Sbjct  60   YVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFIT--------  111

Query  100  SALLWFTTLFLIGGSRFIWRIFQDNIFTQHVPGSQNQVLIIGAGDAGVMAARE-LKNKNY  158
                W   L+LIGGSR++WR+++   F ++ +  ++  L++GAG++G +  RE L++++ 
Sbjct  112  ----WMMHLLLIGGSRLFWRVYR-RYFIDN-AVEKKATLVVGAGQGGSVLIREMLRSQDM  165

Query  159  REGRPVGYIDDAVRKQRLQLMG-IPVLGTRKDIPRVVKNHNIDKIIIAMPSASGEVIREI  217
            R  +PV  +DD   KQ++ +   + V G   DIP +VK+  I KIIIA+P+ S   + EI
Sbjct  166  RM-QPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEI  224

Query  218  VGICEKTGVDLKIMPGVFDMVSGQLDTNEIREVQVEDLLGREPVSVNLEDVAGYLTGEVV  277
              IC+  GV+L  MP + D++SG+L+ N+++ V+VEDLLGR+PV +++  ++  LT   +
Sbjct  225  NKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTI  284

Query  278  LITGGGGSIGSELCRQVARFNPAKLVVVGHGENSVFDIEQEL-RVDNPTLDVATEILDVK  336
            L+TG+GGSIGSE+CRQV++F+P K++++GHGENS++ I+QEL +     ++    I DV+
Sbjct  285  LVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQ  344

Query  337  DRDKVHIVFQRYKPGVVFHAAAHKHVPLMEKNPEEALKNNVMGTSNLTEAADEAKVKTFV  396
            ++ ++  V + +KP  V+HAAAHKHVPLME NP+EA++NN++GT N++E+A E+ V  FV
Sbjct  345  NKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFV  404

Query  397  LISTDKAVNPTSIMGTTKRVAEMVIQSM-DKRSETKFVAVRFGNVLGSRGSVIPTFKRQI  455
            +ISTDKAVNP+++MG+TKR+AEMVIQS+ +  S T FVAVRFGNVLGSRGSVIP FK QI
Sbjct  405  MISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQI  464

Query  456  AKGGPVTVTHPDMVRFFMTIPEASQLVIQAGSMAEGGEIFILDMGQPVKILDLARDLISL  515
              GGPVTVTHP+M R+FMTIPEAS+LV+QAG++A+GGE+F+LDMG+PVKI+DLA++LI L
Sbjct  465  ESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRL  524

Query  516  SGFEPDVDIKIKFTGMRPGEKLYEELLTAEEGTSATKHKRIFVAKPNNINVSQLE  570
            SG   + DI I F+G+RPGEKLYEELL  +E  +     +I+ +K ++   ++++
Sbjct  525  SG-KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVD  578

117) Mahau_0321 in NC_015520


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  391 bits (1470),  Expect = 7e-110, Method: Compositional matrix adjust.
 Identities = 252/518 (49%), Positives = 384/518 (75%), Gaps = 10/518 (1%)

Query  61   YVFGLYDSLWRYASVDDMVSI--TLATGLGTAINMAGLYLITIRFPRSIYLLSWLFTLLL  118
            YVF LY+  W YASV +++S+  ++++++  ++ + +L +    F R +Y+++W+  LLL
Sbjct  60   YVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLR-LYFITWMMHLLL  118

Query  119  VGSSRLIFRGVAFYRPILSREPKQQNKVLIVGAGEAGAMVIKELKKHRELGMVPVAIIDD  178
            +G+SRL+ R    YR  +  ++ +++  L+VGAG++G+++I+E+ + +++ M PV  +DD
Sbjct  119  IGGSRLFWRV---YRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDD  175

Query  179  DDNKQHGRLHG-VPVLGRREDIAEIARELHIDQIIIAIPSASRDELRSILDECKKTRCRL  237
            D NKQ   +   V V G  EDI+E+ + ++I +IIIAIP+ S+  L  I   C+     L
Sbjct  176  DKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVEL  235

Query  238  KIMPGVYEVINGDVTINQIRDVKVEDLLGRAPVELDTQSIAGYLTNAVVLITGGGGSIGS  297
              MP + +V++G++ +N+++ V VEDLLGR PVELD   I+  LTN  +L+TG+GGSIGS
Sbjct  236  FKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGS  295

Query  298  ELCRQIARFNPKQLLIFDIYENGAYDVQNELKIHYPS-LDLKVLIGSIRDRARLDSIFEQ  356
            E+CRQ+++F+P+++++++  EN+ Y +++EL   Y + +++  +I+ +++++R+  + ++
Sbjct  296  EICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNE  355

Query  357  YKPDVVFHAAAHKHVPLMEENPTEAIKNNVFGTLNVAEMADKHGAKRFVLISTDKAVNPT  416
            +KP  V+HAAAHKHVPLME NP EAI+NN++GT NVAE A      +FV+ISTDKAVNP+
Sbjct  356  FKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPS  415

Query  417  NVMGATKRVAEMLIQAMA-KHSNTIFAAVRFGNVLGSNGSVIPLFKRQIAEGGPVTVTHP  475
            NVMGATKR+AEM+IQ++   +S+T F AVRFGNVLGS GSVIPLFK QI  GGPVTVTHP
Sbjct  416  NVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHP  475

Query  476  DITRYFMTIPEAAQLVIQAGAMAHGGEIFVLDMGQPVKILDLARDLIKLSGLEPDKDIKI  535
            ++TRYFMTIPEA++LV+QAGA+A+GGE+FVLDMG+PVKI+DLA++LI+LSG   + DI I
Sbjct  476  EMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIGI  534

Query  536  EFTGLRPGEKLYEELLMAEEGLQATKHKKIYIAQPADY  573
            EF+G+RPGEKLYEELL  +E        KIY ++  +Y
Sbjct  535  EFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHY  572

118) ECBG_00487 in NC_020995


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  390 bits (1468),  Expect = 9e-110, Method: Compositional matrix adjust.
 Identities = 283/533 (54%), Positives = 402/533 (76%), Gaps = 10/533 (1%)

Query  57   YGSVFRVFSRINRYTNLKEMIAIFLAVSCSAFTCNVILFFG--DETYSVRLVIFTYFLSL  114
            ++ VF ++ R   Y+++ E+++++ AV+ S     +++ +   +  + +RL ++T  + L
Sbjct  58   FAYVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPF-LRLYFITWMMHL  116

Query  115  FLIIASRLIWRIYIERKNMRGTSNEVVKNTLIVGAGEGGRILYNSFVGSKTASDINIIGF  174
            +LI +SRL+WR+Y  R+   + + E  K TL+VGAG+GG +L    + S+      +++ 
Sbjct  117  LLIGGSRLFWRVY--RRYFIDNAVEK-KATLVVGAGQGGSVLIREMLRSQDMRMQPVLA-  172

Query  175  VDDDPNKRNTYLSGK-KVLGCISDLPELIQKYEINMVTIAIPSLSRKKLRSIFSLIEPLH  233
            VDDD NK++  ++ + KV G + D+PEL++K+ I+ + IAIP+LS+K+L  I  + +   
Sbjct  173  VDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEG  232

Query  234  VKVNTMPSMEEIASGKISTSRLKKIDVVDLLGRDEVKLDIDSIKDQITGKTILVTGAGGS  293
            V +  MP++E++ SG +  + LKK++V DLLGRD V LD+  I  ++T KTILVTGAGGS
Sbjct  233  VELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGS  292

Query  294  IGSEICRQVIQFNPKKLVLLGHGENSIYLIDRELNINFKDNITEIVPVIADIQDREKMFE  353
            IGSEICRQV +F+P+K++LLGHGENSIY I++EL+  + + I E+VPVIAD+Q++ +++E
Sbjct  293  IGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRI-EFVPVIADVQNKTRILE  351

Query  354  IMNEVKPDIVYHAAAHKHVPLMEYNPREAVKNNIYGtkntaeaakaakvknFVMVSTDKA  413
            +MNE KP  VYHAAAHKHVPLMEYNP+EA++NNI GTKN AE+AK + V +FVM+STDKA
Sbjct  352  VMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKA  411

Query  414  NNPPNVMGATKRISEMIVTGLNEKGC-TKFSAVRFGNVLGSRGSVIPVFREQIAKGGPIT  472
             NP+NVMGATKRI+EM++ +LNE    T F AVRFGNVLGSRGSVIP+F++QI  GGP+T
Sbjct  412  VNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVT  471

Query  473  VTDFRMTRYFMTIPEASRLVIQSGALAKGGEIFILDMGEPVKIVDLAKNMIRLSGYSEEE  532
            VT+  MTRYFMTIPEASRLV+Q+GALA+GGE+F+LDMG PVKIVDLAKN+IRLSG  EE+
Sbjct  472  VTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEED  531

Query  533  IDIIETGIRPGeklyeellldkeRNDEAVFEKIFVGNIKGYSLEEVLCFVEAL  585
            I+I  +GIRPGEKLYEELL  +E + + V+EKI+ G++  Y   EV  +VE L
Sbjct  532  IGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDL  584

119) cpsE in NC_015600


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  388 bits (1458),  Expect = 5e-109, Method: Compositional matrix adjust.
 Identities = 271/476 (57%), Positives = 365/476 (77%), Gaps = 7/476 (1%)

Query  91   PRLLWREINSHSKGTSKDGKKVRTLVVGAGKGGSIFVKTILNS-DSNIEIVGFVDDDSNK  149
            +RL+WR       + + + K   TLVVGAG+GGS++++ +L S D  ++ V  VDDD NK
Sbjct  122  SRLFWRVYRRYFIDNAVEKKA--TLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNK  179

Query  150  HGSYLHG-VKVLGDHKAIPNLVSDYAIEQVTIAIPSLLGKDREKIIETCNQCGVRVNSMP  208
            +   +   VKV G    IP+LV  + I ++ IAIP+L  K  + I   CN  GV +  MP
Sbjct  180  QKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMP  239

Query  209  NIEDVIVGKVSTQNLREIDIADLLGREEIELNQTNLGEFFREKTVLVTGAGGSIGSEICR  268
            NIEDV+ G +  +NL+ +++ DLLGR+ +EL+ + ++  + +KT+LVTGAGGSIGSEICR
Sbjct  240  NIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICR  299

Query  269  QVSNFKPKKLLLLGHGENSIYLIHRELLQKYGREieiipiiadiQDRDLIFNLLKDYRPN  328
            QVS+F P+K++LLGHGENSIY IH+EL + YG  IE++P+IAD+Q++  I++++++++P 
Sbjct  300  QVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPY  359

Query  329  YVYHAAAHKHVPLMEYNPKEAVKNNIFGTKNVAEAALEAGVEKCVMISTDKAVNPTNVMG  388
             VYHAAAHKHVPLMEYNP EA++NNI+GTKNVAE+A E+ V K VMISTDKAVNP+NVMG
Sbjct  360  AVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMG  419

Query  389  ATKRVAETIVTGLN-GKGKTKFVAVRFGNVLGSRGSVVPVFKEQVAKGGPLTVTDFRMTR  447
            ATKR+AE ++ +LN +++KT FVAVRFGNVLGSRGSV+P+FK+Q+  GGP+TVT+  MTR
Sbjct  420  ATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTR  479

Query  448  YFMTIPEASRLVIQAGYQAKGGEVFVLDMGEPVKIVDLAKKIIKLSGHTEEEIGIVESGI  507
            YFMTIPEASRLV+QAG  A+GGEVFVLDMG PVKIVDLAK++I+LSG  EE+IGI  SGI
Sbjct  480  YFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGI  539

Query  508  RPGEKLYEELLSSDERVSEQVHEKIFIGKVTPKPAEEVDSFISTLLS--TDNKTLK  561
            RPGEKLYEELL+ +E  ++QV EKI+ GKV      EVD ++  L++  + +K LK
Sbjct  540  RPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLK  595

120) Dhaf_4505 in NC_011830


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  388 bits (1459),  Expect = 5e-109, Method: Compositional matrix adjust.
 Identities = 257/535 (49%), Positives = 387/535 (73%), Gaps = 32/535 (5%)

Query  52   YIFGLYNKLWQYASIGELISiifavtvaaagtitvv------------YFIAPMRFPHTV  99
            Y+F LY++ W+YAS++EL+S++ AVT +   T+ +V            YFI+        
Sbjct  60   YVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFIT--------  111

Query  100  SALMWFSTLFLIGGSRFIWRILQDNIFTPHVPGSQNQVLIIGAGDAGVMAARE-LKNKNY  158
                W   L+LIGGSR++WR+ +  ++   V   ++  L++GAG++G +  RE L++++ 
Sbjct  112  ----WMMHLLLIGGSRLFWRVYRRYFIDNAV--EKKATLVVGAGQGGSVLIREMLRSQDM  165

Query  159  REGRPVGYIDDAATKQRLQLMG-IPVLGTRRDIPRVVKNHNIDKIIIAMPSASGDVIREI  217
            R  +PV  +DD   KQ++ +   + V G   DIP +VK+  I KIIIA+P+ S   + EI
Sbjct  166  RM-QPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEI  224

Query  218  VGICEKTGVDLKIMPGVFDVVSGKVDTKEIRQVQVEDLLGREAVTVDLEDVAGYLAGEAV  277
              IC+  GV+L  MP + DV+SG ++ +++++V+VEDLLGR++V +D+  ++  L+  ++
Sbjct  225  NKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTI  284

Query  278  LITGGGGSIGSELCRQVARFNPAKLVIVGHGENSVFDIEQEL-RSENPGLDVVTEILDIK  336
            L+TG+GGSIGSE+CRQV++F+P K++++GHGENS++ I+QEL ++    ++ V  I D++
Sbjct  285  LVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQ  344

Query  337  DREKVHLVFQRYKPGVVFHAAAHKHVPLMEKNPEEAMKNNIMGTSNLAEAADAAKVKTFV  396
            ++ ++  V + +KP  V+HAAAHKHVPLME NP+EA++NNI+GT N+AE+A  + V  FV
Sbjct  345  NKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFV  404

Query  397  LISTDKAVNPTSIMGATKRVAEMVIQSM-DKRSDTKYVAVRFGNVLGSRGSVIPTFKRQI  455
            +ISTDKAVNP+++MGATKR+AEMVIQS+ +  S T +VAVRFGNVLGSRGSVIP FK QI
Sbjct  405  MISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQI  464

Query  456  AKGGPVTVTHPDMVRYFMTIPEASQLVIQAGSMAQGGEIFILDMGQPVKILDLARDLIRL  515
              GGPVTVTHP+M RYFMTIPEAS+LV+QAG++AQGGE+F+LDMG+PVKI+DLA++LIRL
Sbjct  465  ESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRL  524

Query  516  SGFEPDVDIKIKFTGMRPGEKLFEELLTAEEGTSATKHKRIFVAKPNNINVSQLE  570
            SG   + DI I F+G+RPGEKL+EELL  +E  +     +I+ +K ++   ++++
Sbjct  525  SG-KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVD  578

121) TEH_03930 in NC_016052


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  386 bits (1452),  Expect = 1e-108, Method: Compositional matrix adjust.
 Identities = 281/527 (54%), Positives = 396/527 (76%), Gaps = 10/527 (1%)

Query  56   IFGYVFRVFTRINRYTNLREilai--llattgtalgnaiYLLSFSEAFSKRLILFTYILS  113
            IF+YVF ++ R   Y+++ E++++   ++++       + LL    +F  RL ++T ++ 
Sbjct  57   IFAYVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFL-RLYFITWMMH  115

Query  114  AFFIILSRLAWRLFVERRNMHTAKDQPAKRTLIVGAGEGGRVLYNSFLGSKTASDIQVVG  173
             ++I  SRL WR++   R     +    K TL+VGAG+GG VL    L S+      V++
Sbjct  116  LLLIGGSRLFWRVY---RRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLA  172

Query  174  FVDDDPNKQKVYLSN-VKVLGKMKDLPQLVGKYQIDMVTIAIPSLPRKRLREVFDLLENN  232
             VDDD NKQK+ +++ VKV G + D+P+LV K++I  + IAIP+L++KRL E+  + + +
Sbjct  173  -VDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIE  231

Query  233  PVTVNTMPSMEEMAAGKINISKLKEIDVVDLLGRDEAKLDVASIKDQITDKIILVTGAGG  292
             V +  MP++E++ +G +++++LK ++V DLLGRD   LD+A I  ++T+K ILVTGAGG
Sbjct  232  GVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGG  291

Query  293  SIGSEITRQVIQFNPRQLILLGHGENSIYLIHRELSARFKERTTELVPIIADVQNREKIF  352
            SIGSEI RQV +F+P+++ILLGHGENSIY IH+ELS  + +R  E+VP+IADVQN+ +I+
Sbjct  292  SIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNR-IEFVPVIADVQNKTRIL  350

Query  353  EVMSKYQPDIVYHAAAHKHVPLMEFNPKEAVKNNVYGTKNVAEAAKAHAVEQFVMVSTDK  412
            EVM+ ++P  VYHAAAHKHVPLME+NP EA++NN+ GTKNVAE+AK   V +FVM+STDK
Sbjct  351  EVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDK  410

Query  413  ANNPPNVMGATKRIAEMIVTGMNEKET-TKFSAVRFGNVLGSRGSVIPLFREQLANGGPL  471
            A NP+NVMGATKRIAEM++ ++NE ++ T F AVRFGNVLGSRGSVIPLF++Q+ +GGP+
Sbjct  411  AVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPV  470

Query  472  TVTDFRMTRYFMTIPEASRLVIQSGALANGGEVFVLDMHEPVKILDLAKNMVRLSGYSED  531
            TVT+  MTRYFMTIPEASRLV+Q+GALA+GGEVFVLDM  PVKI+DLAKN++RLSG  E+
Sbjct  471  TVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEE  530

Query  532  DIEIVETGIRPGeklyeellldkeRSEEQVHDQIFVGNVNGYSLDEV  578
            DI I  +GIRPGEKLYEELL  +E   +QV ++I+ G+V+ Y   EV
Sbjct  531  DIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEV  577

122) SSUD12_1366 in NC_017621


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  383 bits (1440),  Expect = 1e-107, Method: Compositional matrix adjust.
 Identities = 260/487 (54%), Positives = 375/487 (78%), Gaps = 10/487 (2%)

Query  111  RFILVSLFLSYVMLITPRIVWKVLHET-RKNAIRKKDSPLRILVVGAGDGGNIFINTV--  167
            R+ +++  +  +++  +R+ W+V +     NA+ KK +    LVVGAG+GG+++I  +  
Sbjct  106  RLYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEKKAT----LVVGAGQGGSVLIREMLR  161

Query  168  -EDRKLNFEIVGIVDRDPNKLGTFIRTAKVLGNRNDIPRLVEELAVDQVTIAIPSLNGKE  226
             +D +++  +    D++ +K+ T+    KV G  +DIP LV  + + ++ IAIP+L+ K 
Sbjct  162  SQDMRMQPVLAVDDDKNKQKM-TITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKR  220

Query  227  REKIVEICNTTGVTVNNMPSIEDIMAGNMSVSAFQEIDVADLLGRPEVVLDQDELNQFFK  286
             + I  ICN  GV + +MP+IED+++G++ V+ ++ ++V DLLGR  V LD   +++ + 
Sbjct  221  LNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELT  280

Query  287  GKTILVTGAGGSIGSELCRQIAKFTPKRLLLLGHGENSIYLIHRELLEKYQGKIELVPLI  346
             KTILVTGAGGSIGSE+CRQ++KF P++++LLGHGENSIY IH+EL   Y  +IE+VP+I
Sbjct  281  NKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVI  340

Query  347  ADIQDRELIFSIMAEYQPDVVYHAAAHKHVPLMEYNPHEAVKNNIFGTknvaeaaktakv  406
            AD+Q++  I+ +M E++P  VYHAAAHKHVPLMEYNPHEA++NNI+GTKNVAE+AK + V
Sbjct  341  ADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEV  400

Query  407  akfvmvSTDKAVNPPNVMGATKRVAEMIVTGLNE-PGQTQFAAVRFGNVLGSRGSVVPLF  465
            +KFVM+STDKAVNP+NVMGATKR+AEM++ +LNE  ++T F AVRFGNVLGSRGSV+PLF
Sbjct  401  SKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLF  460

Query  466  KEQIKKGGPVTVTDFRMTRYFMTIPEASRLVIQAGHLAKGGEIFVLDMGEPVQILELARK  525
            K+QI  GGPVTVT+  MTRYFMTIPEASRLV+QAG LA+GGE+FVLDMG PV+I++LA++
Sbjct  461  KNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKN  520

Query  526  VILLSGHTEEEIGIVESGIRPGEKLYEELLSTEERISEQIHEKIFVGRVTNKQSDIVNLF  585
            +I LSG  EE+IGI  SGIRPGEKLYEELL+ +E  ++Q+ EKI+ G+V +     V+L+
Sbjct  521  LIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLI  580

Query  586  INGLLQK  592
            +++L+++
Sbjct  581  VEDLINN  587

123) Dtox_3994 in NC_013216


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  382 bits (1438),  Expect = 2e-107, Method: Compositional matrix adjust.
 Identities = 253/514 (50%), Positives = 385/514 (75%), Gaps = 13/514 (2%)

Query  56   VFFYFFGLYQRVWAYASIGELVTIVKAVTTGKLVVIALTYFIF--TPLPRSVVLMSWAFS  113
            +F Y F LY+R W YAS++EL++++KAVT++ +V + L  +++  +P+ R + +++W   
Sbjct  57   IFAYVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLR-LYFITWMMH  115

Query  114  IILIGGSRLYWRIYMQKKKFIVAGCPLDKRKTLIVGAGDAGVLVVRELM-NHNSEYLPVG  172
            ++LIGGSRL+WR+Y   +++++   +++K+ TL+VGAG++G +++RE++ +++    PV 
Sbjct  116  LLLIGGSRLFWRVY---RRYFIDN-AVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVL  171

Query  173  FIDDDASKQGMVILG-IPVLGKREELPSIIEKCRIKEVIIAMPSVSGQVIKETVEKCHNS  231
             +DDD +KQ M I   + V G  E++P ++ K RIK +IIA+P++S + ++E    C+  
Sbjct  172  AVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIE  231

Query  232  RVKLKILPGVYQLISGQVTVNHIRDIQVEDLLGREPVEVDLSEIAGYLTDRVVLVSGAGG  291
             V L  +P + +++SG++ VN+++ ++VEDLLGR+PVE+D++ I+  LT++ +LV+GAGG
Sbjct  232  GVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGG  291

Query  292  SIGSELCRQvvrlkpkllvvlGHGENSIHNIVFELREMHGSDLPIEIVIADIRDRQKINL  351
            SIGSE+CRQV ++ P+ +++LGHGENSI +I  EL    G+ + +  VIAD++++ +I  
Sbjct  292  SIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILE  351

Query  352  IFKKYRPSVVFHAAAHKHVPLMELHPDESVKTNVLGTKNLAEAADRVGTDVFIMLSTDKA  411
            + + ++P  V+HAAAHKHVPLME +P+E+++ N+LGTKN+AE+A       F+M+STDKA
Sbjct  352  VMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKA  411

Query  412  VNPSSVMGATKRLAELILQQMN-SISDTVYAAVRFGNVLGSNGSVVPIFKRQIAQGGPVT  470
            VNPS+VMGATKR+AE+++Q +N   S T + AVRFGNVLGS GSV+P+FK QI  GGPVT
Sbjct  412  VNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVT  471

Query  471  VTHPEMKRYFMTIPEAVQLVIQAGAMAQGGEIFVLDMGEPVKIVDLAKCIIDLSG---VD  527
            VTHPEM RYFMTIPEA +LV+QAGA+AQGGE+FVLDMG PVKIVDLAK +I LSG    D
Sbjct  472  VTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEED  531

Query  528  CEIKFTGIRPGEKLFEELLTAEEGSSATRHRRIF  561
              I F+GIRPGEKL+EELL  +E  +     +I+
Sbjct  532  IGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIY  565

124) EHR_10200 in NC_018081


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  382 bits (1437),  Expect = 2e-107, Method: Compositional matrix adjust.
 Identities = 292/595 (50%), Positives = 435/595 (74%), Gaps = 12/595 (2%)

Query  1    MIKPTRKIKAISLVLLDSFLIILANYISFIFMVP-FVIINRDYLAITLISSVVCYLFYGG  59
            M   + K++ + L+++DSF++ ++ ++++ ++ P F   + D L ++ +  +V   +++ 
Sbjct  1    MTSISAKLRFLILIIIDSFIVTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAY  60

Query  60   IFKVFTRINRYTNLNELLGIFAALTFMLFSIFPLFYLFNQELMYQISLRLVVFSYIMALL  119
            +F+++ R   Y++++EL++++ A+T  +   + L  L+  E  +   LRL  ++ +M LL
Sbjct  61   VFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPF---LRLYFITWMMHLL  117

Query  120  LVASSRLGWRVWVELKNKNGRSNEKKVRILIIGAGDGGQLLYQSFLGSQIVNNIEVVGFV  179
            L+++SRL WRV    +   + + EKK   L++GAG+GG +L +  L SQ +    V++ V
Sbjct  118  LIGGSRLFWRVYR--RYFIDNAVEKKA-TLVVGAGQGGSVLIREMLRSQDMRMQPVLA-V  173

Query  180  DDDCNKWGTYLLGK-KVLGNTREINQLIQTFRINMVTIAIPSLPKKKIQQLVQSIENKNI  238
            DDD NK    +  + KV G   +I +L++ FRI+ + IAIP+L++K+++++ +  +   +
Sbjct  174  DDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGV  233

Query  239  KVNMVPSFEEVATGKINVSQLKEVDVIDLLGREEVSLDLESISHQLEGQTILVTGAGGSI  298
             +  +P++E+V +G ++V++LK V+V DLLGR+ V LD+  IS++L  +TILVTGAGGSI
Sbjct  234  ELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSI  293

Query  299  GSEICRQVLAFEPAKLILLGHGENSIYSIHRELTTLDPQRKVEILPIIADIQDRERIFYL  358
            GSEICRQV  F+P K+ILLGHGENSIYSIH+EL+    +R +E++P+IAD+Q++ RI+ +
Sbjct  294  GSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNR-IEFVPVIADVQNKTRILEV  352

Query  359  MEKYHPTIVYHAAAHKHVPLMEYNPTEAIKNNINGTKNVAEAAKKNHVKNFVMISSDKAN  418
            M+ + P  VYHAAAHKHVPLMEYNP EAI+NNI GTKNVAE+AK  +V +FVMIS+DKA 
Sbjct  353  MNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAV  412

Query  419  RPPNVMGATKRIAEMLITSLNQ-SGETKFSAVRFGNVLGSRGSVIPLFKEQILRGGPIIV  477
             P+NVMGATKRIAEM+I SLN+ ++ T F AVRFGNVLGSRGSVIPLFK+QI  GGP+ V
Sbjct  413  NPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTV  472

Query  478  TDFRMTRYFMTIPEASRLVIQSGALAKGGEIFVLDMDKPIKIVDLAKNMIHLSGYT-EDI  536
            T+  MTRYFMTIPEASRLV+Q+GALA+GGE+FVLDM+KP+KIVDLAKN+I+LSG   EDI
Sbjct  473  THPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDI  532

Query  537  EIVETGIRPGeklyeelllekekkeTQIFEKIFVGDIKGFSLKEVTQLIEQLPED  591
             I  +GIRPGEKLYEELL  +E    Q++EKI+ G +  +   EV  ++E+L ++
Sbjct  533  GIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINN  587

125) K710_0836 in NC_021314


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  381 bits (1433),  Expect = 4e-107, Method: Compositional matrix adjust.
 Identities = 250/469 (54%), Positives = 358/469 (77%), Gaps = 7/469 (1%)

Query  91   RFIFLAYIFSSFLVSAPRITWRLWHEFNLSkyekgkkekkRILVVGAGEGGSTFIQTVL-  149
            R+ F++ +   +L++++R+ WR+ + + + +    K      LVVGAG+GGS +I+ +L 
Sbjct  106  RLYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEKKAT----LVVGAGQGGSVLIREMLR  161

Query  150  NKGKDIEIVGIVDSDINKLG-TYLHGIKVMGNKYSIPRLVAEYEVNQVTIAIPSLDGKGR  208
            +++  ++ V  VD D NK   T  + +KV G    IP LV  + ++++ IAIP+L  K  
Sbjct  162  SQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRL  221

Query  209  EAILDICRQANVPVNNMPSIENIVMGNVSLNTFEEIDIADLLSRNEVFLDQSALQPFFSE  268
            + I  IC    V + +MP+IE+++ G++ +N +  +++ DLL+R+ V LD + +   +++
Sbjct  222  NEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTN  281

Query  269  KTVLVTGAGGSIGSEICRQVAHFKPKQILLLGHGENSIYLINRELNAKYSDNiiitpiia  328
            KT+LVTGAGGSIGSEICRQV+ F P++I+LLGHGENSIY I++EL+  Y++ I + P+IA
Sbjct  282  KTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIA  341

Query  329  diQDRDLMFKIMADYKPDVVYHAAAHKHVPLMEYNPREAVKNNIFGTKNVAEAAKAAGIP  388
            D+Q++  ++ +M ++KP  VYHAAAHKHVPLMEYNP+EA++NNI+GTKNVAE+AK + ++
Sbjct  342  DVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVS  401

Query  389  KFVMVSTDKAVNPPNIMGATKRFAEMIVTGLNE-AGKTQFAAVRFGNVLGSRGSVVPLFK  447
            KFVM+STDKAVNP+N+MGATKR+AEM++ +LNE  +KT F AVRFGNVLGSRGSV+PLFK
Sbjct  402  KFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFK  461

Query  448  EQIKKGGPVTVTDFRMTRYFMTIPEASRLVIQAGFQASGGEIFVLDMGEPVKILDLAKKV  507
            +QI  GGPVTVT+  MTRYFMTIPEASRLV+QAG  A GGE+FVLDMG PVKI+DLAK++
Sbjct  462  NQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNL  521

Query  508  IKLSGHTEDEIAIVESGIRPGEKLYEELLSTSERVSEQVHDKIFVGRVS  556
            I+LSG  E++I+I  SGIRPGEKLYEELL+ +E  ++QV +KI+ G+V 
Sbjct  522  IRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVD  570

126) MPD5_1391 in NC_016938


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  379 bits (1425),  Expect = 2e-106, Method: Compositional matrix adjust.
 Identities = 263/532 (50%), Positives = 391/532 (74%), Gaps = 8/532 (1%)

Query  55   GFVFNVFTRINRYTNTKEIRAIFLSMTAASICEFFllllldlnddY-RFVLLTYLVANFL  113
            ++VFN++ R   Y++  E+ +++ ++T++ +  ++L+ LL  +  + R+ ++T ++  +L
Sbjct  59   AYVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLL  118

Query  114  IITSRLVWCTIIEAKSKSKVHGNQVYPKQTLIIGAGEAGQLLLNSLHTSAKNSGIKVIGL  173
            I  SRL W        +    +N V  K TL++GAG++G +L+  +  S       V+++
Sbjct  119  IGGSRLFWRVY-----RRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAV  173

Query  174  IDDAPDKYHTYLSGVRVLGNTKQIPNIIKDYDIEMLTLAIPSIHPEQLKRILDIITPLGL  233
             DD   +  T    V+V G   +IP+++K + I  + +AIP++   +L+ I  I    G+
Sbjct  174  DDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGV  233

Query  234  PVNSMPDLEEVASGNITISRLKEIEVVDLLGREEVQLNIEQIKDQLSNKVILVTGAGGSI  293
             +  MP++E+V SG++ ++ LK +EV DLLGR+ V+L++  I  +L+NK ILVTGAGGSI
Sbjct  234  ELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSI  293

Query  294  GSEICRQVMKFNPETLILLGHGENSIYLIEKELHNTFQHASTEIIPIIADIQDKQQMVEI  353
            GSEICRQV KF+P+ +ILLGHGENSIY I++EL +T+ +   E++P+IAD+Q+K +++E+
Sbjct  294  GSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGN-RIEFVPVIADVQNKTRILEV  352

Query  354  MKRFHPQIVYHAAAHKHVPLMEYNPQSAIKNNIFGtkntaeaakaanvanFVMISTDKAV  413
            M+ F P  VYHAAAHKHVPLMEYNP+ AI+NNI+GTKN AE+AK ++V++FVMISTDKAV
Sbjct  353  MNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAV  412

Query  414  NPPNIMGATKRVAELIITNLN-KTGNTKFCAVRFGNVLGSRGSVIPLFKEQINKGGPITI  472
            NP+N+MGATKR+AE++I +LN   ++T F AVRFGNVLGSRGSVIPLFK+QI+ GGP+T+
Sbjct  413  NPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTV  472

Query  473  TDFRMTRYFMTIPEASRLVIQVGALARGGEIFILDMGDPVKIIDLAKNMIKLSGYKENEI  532
            T+  MTRYFMTIPEASRLV+Q GALA+GGE+F+LDMG PVKI+DLAKN+I+LSG KE++I
Sbjct  473  THPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDI  532

Query  533  KIIETGSRPGEKLYEELLVNKKKNHKQVFDKIFIEDIRGSFPDEVLPFVDNL  584
             I  +G RPGEKLYEELL ++  + +QV++KI+   +   +  EV  +V++L
Sbjct  533  GIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDL  584

127) SSUST3_0740 in NC_015433


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  378 bits (1421),  Expect = 4e-106, Method: Compositional matrix adjust.
 Identities = 261/487 (54%), Positives = 375/487 (78%), Gaps = 10/487 (2%)

Query  111  RFILVSLFLSYVMLITPRIVWKVLHET-RKNAIRKKDNPLRILVVGAGDGGNIFINTV--  167
            R+ +++  +  +++  +R+ W+V +     NA+ KK      LVVGAG+GG+++I  +  
Sbjct  106  RLYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEKKAT----LVVGAGQGGSVLIREMLR  161

Query  168  -EDRKLNFEIVGIVDRDPNKLGTFIRTAKVLGNRNDIPRLVEKLAVDQVVIAIPSLNSKE  226
             +D +++  +    D++ +K+ T+    KV G  +DIP LV K+ + +++IAIP+L+ K 
Sbjct  162  SQDMRMQPVLAVDDDKNKQKM-TITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKR  220

Query  227  REKIVEICNTTGVTVNNMPSIEDIMAGNMSVSAFQEIDVADLLGRLEVVLDQDELNQFFK  286
             + I  ICN  GV + +MP+IED+++G++ V+ ++ ++V DLLGR  V LD   +++ + 
Sbjct  221  LNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELT  280

Query  287  GKTILVTGAGGSIGSELCRQIAKFTPKCLLLLGHGENSIYLIHRELLEKYQGKIELVPLI  346
             KTILVTGAGGSIGSE+CRQ++KF P+ ++LLGHGENSIY IH+EL   Y  +IE+VP+I
Sbjct  281  NKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVI  340

Query  347  ADIQDRELIFSIMAEYQPDVVYHAAAHKHVPLMEYNPHEAVKNNIFGTknvaeaaktakv  406
            AD+Q++  I+ +M E++P  VYHAAAHKHVPLMEYNPHEA++NNI+GTKNVAE+AK + V
Sbjct  341  ADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEV  400

Query  407  akfvmvSTDKAVNPPNVMGATKRVAEMIVTGLNE-PGQTQFAAVRFGNVLGSRGSVVPLF  465
            +KFVM+STDKAVNP+NVMGATKR+AEM++ +LNE  ++T F AVRFGNVLGSRGSV+PLF
Sbjct  401  SKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLF  460

Query  466  KEQIRKGGPVTVTDFRMTRYFMTIPEASRLVIQAGHLAKGGEIFVLDMGEPVQILELARK  525
            K+QI  GGPVTVT+  MTRYFMTIPEASRLV+QAG LA+GGE+FVLDMG PV+I++LA++
Sbjct  461  KNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKN  520

Query  526  VILLSGHTEEEIGIVESGIRPGEKLYEELLSTEERISEQIYEKIFVGRVTNKQSDIVNSF  585
            +I LSG  EE+IGI  SGIRPGEKLYEELL+ +E  ++Q+YEKI+ G+V +     V+ +
Sbjct  521  LIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLI  580

Query  586  INGLLKK  592
            +++L+++
Sbjct  581  VEDLINN  587

128) SCIM_1578 in NC_018073


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  376 bits (1414),  Expect = 1e-105, Method: Compositional matrix adjust.
 Identities = 265/504 (53%), Positives = 383/504 (76%), Gaps = 14/504 (2%)

Query  103  RFLLLSCMFSILFTISIRLAWRMWHSLKNGVNYEEVTNLNVRRTLVVGAGDGGNLFITTA  162
            R+ +++ M  +L+  + RL WR+ +       Y     ++ + TLVVGAG+GG+++I   
Sbjct  106  RLYFITWMMHLLLIGGSRLFWRVYR------RYFIDNAVEKKATLVVGAGQGGSVLIREM  159

Query  163  LKDSPDLkivaivdkdvkkQG---SFLHGVKVVGSDEQIPEIVANYEINQIVIAIPSLKP  219
            L+ S D+++ +++  D  K+    ++ + VKV G  E+IPE+V ++ I++I+IAIP+L  
Sbjct  160  LR-SQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQ  218

Query  220  EEYEHLLELCKKTAAKVSTIPKYEEVVTGKLSVSKLREIDIADLLGRKEVKLDQTSLNSN  279
               +++  +C+  +  +  +P+ E+V++G L V++L+ +++ DLLGR  V LD + ++ +
Sbjct  219  KRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRE  278

Query  280  LKGKTVLVTGAGGSIGSELCRQIARFFPKRLLLLGHGENSIYVIHKELLAQYKDTIEIVP  339
            L  KT+LVTGAGGSIGSE+CRQ+++F P++++LLGHGENSIY IH+EL   Y + IE+VP
Sbjct  279  LTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVP  338

Query  340  IIADIQDRERIFKLMETYHPDRVYHAAAHKHVPLMEYNPTEAVKNNIYGTknvaeaakaa  399
            +IAD+Q++ RI+ +M+ + P  VYHAAAHKHVPLMEYNP EA++NNI GTKNVAE+AK +
Sbjct  339  VIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEG  398

Query  400  gvakfvMISTDKAVNPPNVMGATKRVAEMIVTSLNEE-GKTLFAAVRFGNVLGSRGSVVP  458
             V+KFVMISTDKAVNP+NVMGATKR+AEM++ SLNE+ +KT F AVRFGNVLGSRGSV+P
Sbjct  399  EVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIP  458

Query  459  LFKEQIAKGGPITVTDFRMTRYFMTIPEASRLVIQAGALMHGGEIFVLDMGEPVKILNLA  518
            LFK+QI  GGP+TVT+  MTRYFMTIPEASRLV+QAGAL +GGE+FVLDMG PVKI++LA
Sbjct  459  LFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLA  518

Query  519  KKMITLSGHTENEIKIVESGIRPGEKLYEVLLSSEERKAEQIYEKIFVGNVHALSKEEVD  578
            K++I LSG  E++I I  SGIRPGEKLYE LL+ +E  ++Q+YEKI+ G+V+   K EVD
Sbjct  519  KNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVD  578

Query  579  AFICSISNLDGQELKEKLVQFAQQ  602
             +   + +L  +  KEKL+++A++
Sbjct  579  LI---VEDLINNFSKEKLLKIANR  599

129) A2cp1_4432 in NC_011891


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  376 bits (1413),  Expect = 2e-105, Method: Compositional matrix adjust.
 Identities = 246/541 (46%), Positives = 378/541 (70%), Gaps = 26/541 (4%)

Query  49   YLGGLFRGLWRYTGARDLVGIIRWTSLSSVAYL----------AFLHIGFQGFSRSVVAI  98
            Y+  L++  W Y++  +L+++++  + S V  L          +FL++ F         I
Sbjct  60   YVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYF---------I  110

Query  99   EWLTAVIVIGGTrflarflyarrfVVAEPGLSRMRVLVIGAGDAGEMLLREIQKRHGARY  158
             W+  +++IGG+R++ R          + ++ +   LV+GAG++G +L+RE+ + ++ R 
Sbjct  111  TWMMHLLLIGGSRLFWRVYRRY---FIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRM  167

Query  159  EPVGLVDDDRAKRGEQIHG-VRVVGTIEDIPHVARDLRVDEAIIAVPSASGAQMRRIVDL  217
            +PV  VDDD+ K+   I   V+V G +EDIP++ + +R+   IIA+P+ S  ++  I  +
Sbjct  168  QPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKI  227

Query  218  CKHAGVRFKTMPGVDQLIDGRVAVSQLRDVDIEDLLGRDPVKLDMASISATIAGRVVMVS  277
            C+  GV +  MP +++++ G + V++L+ V++EDLLGRDPV LDMA IS  ++ + ++V+
Sbjct  228  CNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVT  287

Query  278  GAGGSIGSEICRQVCRFGPSALVLVERAENNLFHIHRELLARF-PKLELVPCIGDVSDAQ  336
            GAGGSIGSEICRQV +F+P  ++L+ ++EN+++ IH+EL   +  ++E+VP I+DV +  
Sbjct  288  GAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKT  347

Query  337  RMAAVFERRRPAIVFHAAAHKHVPMMEWNPGEAVKNNVFGTKTLADMADRYGVERFVMIS  396
            R+  V +  +P  V+HAAAHKHVP+ME NP EA++NN++GTK +A+ A    V +FVMIS
Sbjct  348  RILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMIS  407

Query  397  TDKAVNPTSVMGASKRVAEIYVQALSQ-RSKTRFVTVRFGNVLGSAGSVVPIFKEQIAAG  455
            TDKAVNP++VMGA+KR+AE+ +Q+L++  SKT FV+VRFGNVLGS GSV+P+FK+QI +G
Sbjct  408  TDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESG  467

Query  456  GPVTVTHPEMTRYFMTIPEASQLVLEAGAMGNGGEIFILDMGEPVKIADLARELITLSGL  515
            GPVTVTHPEMTRYFMTIPEAS+LVL+AGA+++GGE+F+LDMG PVKI DLA++LI LSG 
Sbjct  468  GPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-  526

Query  516  TPGEDIEIVFSGMRPGEKLFEELSVDSESADRTGHPKIFVGRFRPHAWEQVQRQLHDLAA  575
               EDI I FSG+RPGEKL+EEL   +E   +    KI+ G+       +V+  ++DL  
Sbjct  527  KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLIN  586

Query  576  S  576
            +
Sbjct  587  N  587

130) cps9E in NC_021904


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  375 bits (1410),  Expect = 3e-105, Method: Compositional matrix adjust.
 Identities = 253/487 (52%), Positives = 368/487 (76%), Gaps = 8/487 (1%)

Query  100  LRHLVLTYLFAIMFIAGSRLVWRYYVEYRLHRHGLQTGRFVPTLLVGAGDGARVLL-DRL  158
            LR   +T +  +++I+GSRL WR Y  Y ++ ++++     +TL+VGAG+G+ VL+ + L
Sbjct  105  LRLYFITWMMHLLLIGGSRLFWRVYRRYFID-NAVEKK---ATLVVGAGQGGSVLIREML  160

Query  159  TYDQPNVNVIGLVDDDPDKQNTWLHG-VKVLGGLKNLPSLIKKNEIEQVTVAIPSLPATG  217
              ++  ++ +  VDDD +KQ+  +   VKV G + ++P L+KK  I ++ +AIP+L+   
Sbjct  161  RSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKR  220

Query  218  YEKILASLKDSKVKVNRMPKVSDILLDRSNLGQLEDIDVADLLERPEVKLDMTQISDKIT  277
             + I    +   V + +MP++ D+L +  ++ +L  ++V DLL R  V LDM+ IS  +T
Sbjct  221  LNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELT  280

Query  278  AKVIMVTGAGGSIGSEIVRQVSKFRPKQVLLLGHGENSIYMINREMRQRYPDAHIEFVPV  337
             K I+VTGAGGSIGSEI RQVSKF P++++LLGHGENSIY I++E+ + Y + +IEFVPV
Sbjct  281  NKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGN-RIEFVPV  339

Query  338  IGDVQDRKLMFSLMAKYKPDTVYHAAAHKHVPLMEYNPHEAVKNNVFGTknvadaakaan  397
            I+DVQ++  ++ +M  +KP +VYHAAAHKHVPLMEYNPHEA++NN++GTKNVA++AK ++
Sbjct  340  IADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGE  399

Query  398  vGNFVMVSTDKAVNSSSVMGSTKRMAEMIVTS-ENEPGKTKFAVVRFGNVLGSRGSVVPL  456
            V++FVM+STDKAVN+S+VMG+TKR+AEM++ S +++ +KT F  VRFGNVLGSRGSV+PL
Sbjct  400  VSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPL  459

Query  457  FKRQIKAGGPLTLTDRRMTRYFMTIPEASRLVIQAGALAKGGELFILDMDKPVRILDLAK  516
            FK QI +GGP+T+T+  MTRYFMTIPEASRLV+QAGALA+GGE+F+LDM+KPV+I+DLAK
Sbjct  460  FKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAK  519

Query  517  KVIRLSGHTEEEIGIKEVGMRPGEKLYEELVTDVEATNKKVYDKISLGHVSKYDTTKIIE  576
            ++IRLSG  EE+IGI   G+RPGEKLYEEL+   E   ++VY+KI  G V  Y  T +  
Sbjct  520  NLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDL  579

Query  577  FAQHLLT  583
            + ++L+ 
Sbjct  580  IVEDLIN  586

131) Desku_1733 in NC_015573


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  375 bits (1411),  Expect = 3e-105, Method: Compositional matrix adjust.
 Identities = 276/563 (50%), Positives = 400/563 (72%), Gaps = 27/563 (4%)

Query  59   YAFGLYARMWQYASVSDLLSIVGAVTAGVFVNISLAYFYMEGGKFPLPRTVFIIAWLLNV  118
            Y F LY R W+YASVS+L+S++ AVT+++ V + L  + +  + F     +++I+W++++
Sbjct  60   YVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFL---RLYFITWMMHL  116

Query  119  VLIGGFRFSWRLFLNRGIHFGRLRAGRPVLIvgageagaavaRELNNQNNHHHVPVGFVD  178
            +LIGG R+ WR++  R   ++     ++ L+VGAG++G+ + RE+   ++ +  PV  VD
Sbjct  117  LLIGGSRLFWRVY--RRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVD  174

Query  179  DDPAKQKMQLFG-LPVLGTREDIPRLVDRYAIEEIIIAMPSVPGRVIREIVEICRPTGAK  237
            DD  KQKM +   + V G  EDIP LV ++ I  IIIA+P+++ + + EI  IC   G  
Sbjct  175  DDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVE  234

Query  238  LRILPGIYELIDGKVTVSQIRNVEVEDLLGREPVKVNLEEIAGYLEDRTVLVTGAGGSIG  297
            L  +P I +++ G + V+++++VEVEDLLGR+PV +++  I+  L ++T+LVTGAGGSIG
Sbjct  235  LFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIG  294

Query  298  SELCRQIAQFNPRKLILLGHGENSIFEIHRELSQGYPE-LELAPAIVDVRDAASINRLFG  356
            SE+CRQ+++F+P+K+ILLGHGENSI+ IH+ELS+ Y + +E+ P I DV++ + I  +  
Sbjct  295  SEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMN  354

Query  357  VHRPhvvfhaaahkhvPLMEENAFEALKNNVWGTFNVARAAHDCNVRTFVLISTDKAVNP  416
              +P  V+HAAAHKHVPLME N+ EA++NN+ GT NVA +A + +V  FV+ISTDKAVNP
Sbjct  355  EFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNP  414

Query  417  VSIMGATKRVAEMVVQEMAL-KSKTCFAAVRFGNVLGSRGSVVPIFKKQIASGGPVTVTH  475
             ++MGATKR+AEMV+Q +   +SKT F AVRFGNVLGSRGSV+P+FK+QI SGGPVTVTH
Sbjct  415  SNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTH  474

Query  476  PEMTRYFMTIPEAVQLIIQAGAMARGGEIFVLDMGEPVKIVELAETMIRLSGFEPGEDIE  535
            PEMTRYFMTIPEA +L++QAGA+A+GGE+FVLDMG PVKIV+LA  +IRLSG    EDI 
Sbjct  475  PEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIG  533

Query  536  IVFTGVRPGEKLSEELLTSAEKVNSTRHERIFIARPEPVDSAKLNHFLSVLGNAGWLSEE  595
            I F+G+RPGEKL EELL   E       E+I+         +K++H++            
Sbjct  534  IEFSGIRPGEKLYEELLNKNEIHPQQVYEKIY--------RGKVDHYIKT----------  575

Query  596  EAVALLQGLIPNFRKEKWNKVAQ  618
            E   ++++LI NF KEK  K+A+
Sbjct  576  EVDLIVEDLINNFSKEKLLKIAN  598

132) SIR_1783 in NC_022246


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  375 bits (1409),  Expect = 4e-105, Method: Compositional matrix adjust.
 Identities = 265/504 (53%), Positives = 381/504 (76%), Gaps = 14/504 (2%)

Query  103  RFLLLSCMFSILFTISIRLAWRMWHSLKNGVNYEEVTNLNVHRTLVVGAGDGGNLFITTA  162
            R+ +++ M  +L+  + RL WR+ +       Y     ++   TLVVGAG+GG+++I   
Sbjct  106  RLYFITWMMHLLLIGGSRLFWRVYR------RYFIDNAVEKKATLVVGAGQGGSVLIREM  159

Query  163  LKDSPDLkivaivdkdvkkQG---SFLHGVKVVGSDEQIPEIVANYEINQIVIAIPSLKP  219
            L+ S D+++ +++  D  K+    ++ + VKV G  E+IPE+V ++ I++I+IAIP+L  
Sbjct  160  LR-SQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQ  218

Query  220  EEYEHLLELCKKTAAKVSTIPKYEEVVTGKLSVSKLREIDIADLLGRKEVKLDQTSLNSN  279
               +++  +C+  +  +  +P+ E+V++G L V++L+ +++ DLLGR  V LD + ++ +
Sbjct  219  KRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRE  278

Query  280  LKGKTVLVTGAGGSIGSELCRQIARFFPKRLLLLGHGENSIYVIHKELLAQYKDTIEIVP  339
            L  KT+LVTGAGGSIGSE+CRQ+++F P++++LLGHGENSIY IH+EL   Y + IE+VP
Sbjct  279  LTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVP  338

Query  340  IIADIQDRERIFKLMETYHPDRVYHAAAHKHVPLMEYNPTEAVKNNIYGTknvaeaakaa  399
            +IAD+Q++ RI+ +M+ + P  VYHAAAHKHVPLMEYNP EA++NNI GTKNVAE+AK +
Sbjct  339  VIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEG  398

Query  400  gvakfvMISTDKAVNPPNVMGATKRVAEMIVTSLNEE-GKTLFAAVRFGNVLGSRGSVVP  458
             V+KFVMISTDKAVNP+NVMGATKR+AEM++ SLNE+ +KT F AVRFGNVLGSRGSV+P
Sbjct  399  EVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIP  458

Query  459  LFKEQIAKGGPITVTDFRMTRYFMTIPEASRLVIQAGALMHGGEIFVLDMGEPVKILNLA  518
            LFK+QI  GGP+TVT+  MTRYFMTIPEASRLV+QAGAL +GGE+FVLDMG PVKI++LA
Sbjct  459  LFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLA  518

Query  519  KKMITLSGHTENEIKIVESGIRPGEKLYEVLLSSEERKAEQIYEKIFVGNVHALSKEEVD  578
            K++I LSG  E++I I  SGIRPGEKLYE LL+ +E  ++Q+YEKI+ G+V+   K EVD
Sbjct  519  KNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVD  578

Query  579  AFICSISNLDGQELKEKLVHFAQQ  602
             +   + +L  +  KEKL+ +A++
Sbjct  579  LI---VEDLINNFSKEKLLKIANR  599

133) SSUD9_0745 in NC_017620


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  374 bits (1406),  Expect = 6e-105, Method: Compositional matrix adjust.
 Identities = 260/487 (54%), Positives = 374/487 (77%), Gaps = 10/487 (2%)

Query  111  RFILVSLFLSYVMLITPRIVWKVLHET-RKNAIRKKDNPLRILVVGAGDGGNIFINTV--  167
            R+ +++  +  +++  +R+ W+V +     NA+ KK      LVVGAG+GG+++I  +  
Sbjct  106  RLYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEKKAT----LVVGAGQGGSVLIREMLR  161

Query  168  -EDRKLNFEIVGIVDRDPNKLGTFIRTAKVLGNRNDIPRLVEKLAVDQVVIAIPSLNGKE  226
             +D +++  +    D++ +K+ T+    KV G  +DIP LV K+ + +++IAIP+L+ K 
Sbjct  162  SQDMRMQPVLAVDDDKNKQKM-TITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKR  220

Query  227  REKIVEICNTTGVTVNNMPSIEDIMAGNMSVSAFQEIDVADLLGRLEVVLDQDELNQFFK  286
             + I  ICN  GV + +MP+IED+++G++ V+ ++ ++V DLLGR  V LD   +++ + 
Sbjct  221  LNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELT  280

Query  287  GKTILVTGAGGSIGSELCRQIAKFTPKCLLLLGHGENSIYLIHRELLEKYQGKIELVPLI  346
             KTILVTGAGGSIGSE+CRQ++KF P+ ++LLGHGENSIY IH+EL   Y  +IE+VP+I
Sbjct  281  NKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVI  340

Query  347  ADIQDRELIFSIMAEYQPDVVYHAAAHKHVPLMEYNPHEAVKNNIFGTknvaeaaktakv  406
            AD+Q++  I+ +M E++P  VYHAAAHKHVPLMEYNPHEA++NNI+GTKNVAE+AK + V
Sbjct  341  ADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEV  400

Query  407  akfvmvSTDKAVNPPNVMGATKRVAEMIVTGLNE-PGQTQFAAVRFGNVLGSRGSVVPLF  465
            +KFVM+STDKAVNP+NVMGATKR+AEM++ +LNE  ++T F AVRFGNVLGSRGSV+PLF
Sbjct  401  SKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLF  460

Query  466  KEQIRKGGPVTVTDFRMTRYFMTIPEASRLVIQAGHLAKGGEIFVLDMGEPVQILELARK  525
            K+QI  GGPVTVT+  MTRYFMTIPEASRLV+QAG LA+GGE+FVLDMG PV+I++LA++
Sbjct  461  KNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKN  520

Query  526  VILLSGHTEEEIGIVESGIRPGEKLYEELLSTEERVSEQIHEKIFVGRVTNKQSDIVNSF  585
            +I LSG  EE+IGI  SGIRPGEKLYEELL+ +E  ++Q+ EKI+ G+V +     V+ +
Sbjct  521  LIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLI  580

Query  586  INGLLQK  592
            +++L+++
Sbjct  581  VEDLINN  587

134) NT01CX_1779 in NC_008593


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  374 bits (1405),  Expect = 9e-105, Method: Compositional matrix adjust.
 Identities = 248/534 (47%), Positives = 388/534 (73%), Gaps = 13/534 (2%)

Query  56   IFHLYDRIWKYASIDELISIVYSVSLsniififysyfisyKLLSFVHYRFPATVHIIFWV  115
            +F+LY+R W YAS+ EL+S++ +V+ S ++ ++   ++     +F++  F      I W+
Sbjct  61   VFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISES-PFLRLYF------ITWM  113

Query  116  LSVLALGGTRFIYRVVGGNDNAETFDNKSSNILIVGAGDAGAMLIKEIKKHHSLNYNIVG  175
            + +L +GG+R++ RV       ++ ++K++  L+VGAG++G++LI+E+ + + +  + V 
Sbjct  114  MHLLLIGGSRLFWRVYRRYFIDNAVEKKAT--LVVGAGQGGSVLIREMLRSQDMRMQPVL  171

Query  176  LIDDDLSKIGQVING-IKILGTRDEIIKICNNYGVEEIFIALPSAPLKERKEIYNSCKET  234
             +DDD +K    I   +K+ G  ++I  + +++ +  I+IA+P+ + K  +EI + C+  
Sbjct  172  AVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIE  231

Query  235  GCKLKTLPGIYEIINGNVNISQLRDVDINDLLGRDPVKLNNENINEYINDKVVLVTGGGG  294
            G  L  +P I ++++G++++++L+ V+++DLLGRDPV L+   I+  + +K +LVTG+GG
Sbjct  232  GVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGG  291

Query  295  SIGSELCRQIVKFNPKKLIILDIYENNAYDLQMELKYKYPN-LDMEVVIASIRDMTRLKE  353
            SIGSE+CRQ+ KF+P+K+I+L+  EN+ Y ++ EL   Y N ++   VIA +++ TR+ E
Sbjct  292  SIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILE  351

Query  354  VFETYRPYVVFHAAAHKHVPLMEANPREAIKNNIFGTYNLAKCSDMYNVKRFVQISTDKA  413
            V + ++PY V+HAAAHKHVPLME NP+EAI+NNI+GT N+A  +   +V +FV ISTDKA
Sbjct  352  VMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKA  411

Query  414  VNPTNVMGATKRFCEKIIQAFDNE-SKTEYVAVRFGNVLGSNGSVIPLFKKQIKEGGPVT  472
            VNP+NVMGATKR+ E +IQ+++++ SKT +VAVRFGNVLGS GSVIPLFK+QI  GGPVT
Sbjct  412  VNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVT  471

Query  473  VTHPEINRFFMTIPEAAQLVIQAGAMAKGGEIFVLDMGEPVKIVDLAKDLITLSGLKPDE  532
            VTHPE+ R+FMTIPEA++LV+QAGA+A+GGE+FVLDMG PVKIVDLAK+LI LSG K +E
Sbjct  472  VTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEE  530

Query  533  DIKIEYTGLRPGEKLYEELLMDEVALTSTGHEKIFIEKPKEFNREYIEKSIEDF  586
            DI IE++G+RPGEKLYEELL  +        EKI+  K  ++ +  ++  +ED+
Sbjct  531  DIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDL  584

135) Pjdr2_0353 in NC_012914


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  373 bits (1401),  Expect = 2e-104, Method: Compositional matrix adjust.
 Identities = 251/519 (49%), Positives = 376/519 (73%), Gaps = 8/519 (1%)

Query  65   WQYTGISDMLCLLQVALISAVVPFAAWWVMQGEAHPLLMLHHAA--GTFLLLTAPRLAWR  122
            W+Y+++S+++ +L+ A+ S++V       +     P+L L   +    +LL+ ++RL WR
Sbjct  69   WEYASVSELMSVLK-AVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWR  127

Query  123  IFCDKYSVRKPaggrraliigagSCGTLIAKEMMQNDGVSVTPVGFIDDDPYKHRMDILG  182
            ++  +Y + ++   + +L++GAG  G+++ +EM++++++ + PV  +DDD  K++M I  
Sbjct  128  VY-RRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITE  186

Query  183  -LQVLGNRKEIACVVESHHIDEIIIAMPSVSKTQISELVNLCKTTKAKLKIVPDLQDMID  241
             ++V G   +I+ +V   +I  IIIA+P++S+ +++E+ ++C+     L  +P+++D++ 
Sbjct  187  RVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLS  246

Query  242  NRGAAGRMRDVSVEDLLGRDPIRTDLEHIAGYVQEKVVLVTGAGGSIGSELCRQIAPFKP  301
                   ++ V VEDLLGRDP+  D+  I+  + +K +LVTGAGGSIGSE+CRQ++ F P
Sbjct  247  GELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDP  306

Query  302  SKLLLLGHGENSIYTIEMEMRSAF-PQLAIETVIADVQDRTRIDAVFAKFKPQVVFHAAA  360
             K++LLGHGENSIY+I+ E+  ++  ++ +  VIADVQ++TRI  V   FKP  V+HAAA
Sbjct  307  QKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAA  366

Query  361  HKHVPLMERNPAEAIKNNVFGTKNVAECADAYGAERFVLISTDKAVNPTSVMGTTKRIAE  420
            HKHVPLME NP EAI+NN++GTKNVAE A      +FV+ISTDKAVNP++VMG+TKRIAE
Sbjct  367  HKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAE  426

Query  421  MFIQSL-DMHSNTKFVAVRFGNVLGSRGSVIPRFKDQIVKGGPVTVTHPEMVRYFMTIPE  479
            M IQSL + +S+T FVAVRFGNVLGSRGSVIP FK+QI  GGPVTVTHPEM RYFMTIPE
Sbjct  427  MVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPE  486

Query  480  AVQLVIQAGSFAKGGEVFILDMGKPVKIYDLAVDLIRLSGYEPHVDIDITFSGMREGEKL  539
            A +LV+QAG++A+GGEVF+LDMGKPVKI DLA +LIRLSG   + DI+I FSG+R GEKL
Sbjct  487  ASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIGIEFSGIRPGEKL  545

Query  540  YEELLTNEEGLSSTKHNRIFIGRPVQLNRKELDFEIRKM  578
            YEELL ++E  +    ++I+ G+  +  + E+D+ +  +
Sbjct  546  YEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDL  584

136) DCF50_p2698 in NC_018867


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  372 bits (1399),  Expect = 2e-104, Method: Compositional matrix adjust.
 Identities = 257/534 (49%), Positives = 369/534 (70%), Gaps = 17/534 (3%)

Query  51   VFHF-FGLYKNIWRYASVRELLSIVYAVTVGAALTVMVVYFISPLRLPHSVSVYF--WLM  107
            +F + F LY   W YASV EL+S++ AVT +  +T+++V     +  +  + +YF  W+M
Sbjct  57   IFAYVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLV--SLLISESPFLRLYFITWMM  114

Query  108  LIVLIGGLR-FSQRMRQENAIFAVSNRSQRKVLIIGAGDAGVLALRELKKRDFQEGVPVG  166
             ++LIGG R F +  R+    F  +   ++  L++GAG++G + +RE+ + +     PV 
Sbjct  115  HLLLIGGSRLFWRVYRR---YFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVL  171

Query  167  FIDDSKSKINLHV-QGFPVLGSRDDIRRIVEDYAVDEIIIAIPSADGETVREIVEICKET  225
             +DD K+K ++ + +   V G  +DI  +V  + +  IIIAIP+     + EI  IC+  
Sbjct  172  AVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIE  231

Query  226  RAVLKIMPGVYDILSGKITVSSLREVQVEDLLGREQVSVDLEEVAGYLKNQVVLVTGAGG  285
               L  MP + D+LSG + V++L+ V+VEDLLGR+ V +D+  ++  L N+ +LVTGAGG
Sbjct  232  GVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGG  291

Query  286  SIGSELCRQIVKFFPSKLILAGHGENCIFDIEQELKNS-----PIVTEIFDIKDAGKVNL  340
            SIGSE+CRQ+ KF P K+IL GHGEN I+ I+QEL ++      +V  I D+++  ++  
Sbjct  292  SIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILE  351

Query  341  VFEKYKPYVVFHAAAHKHVPLMEVNPEEALKNNVMGTSNLAAAADKNGVRTFVLISTDKA  400
            V + +KPY V+HAAAHKHVPLME NP+EA++NN++GT N+A +A    V  FV+ISTDKA
Sbjct  352  VMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKA  411

Query  401  VNPTSIMGASKRMAEMVIQDY-DKRSETKFVAVRFGNVLGSRGSVIPTFKKQIMAGGPVT  459
            VNP+++MGA+KR+AEMVIQ   +  S T FVAVRFGNVLGSRGSVIP FK+QI +GGPVT
Sbjct  412  VNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVT  471

Query  460  VTDPRMTRYFMTIPEASQLVIQAGAMASGGEIFILDMGKPVKIVDLAKDLIRLSGFEPGK  519
            VT+P MTRYFMTIPEAS+LV+QAGA+A GGE+F+LDMGKPVKIVDLAK+LIRLSG     
Sbjct  472  VTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEE  530

Query  520  DIQIEFTGVRPGEKLFEEILTSEEGTTATKHKRIFVARPNHIDHEAIEGLVQKI  573
            DI IEF+G+RPGEKL+EE+L  +E        +I+ ++ +H     ++ +V+ +
Sbjct  531  DIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDL  584

137) AnaeK_4411 in NC_011145


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  372 bits (1398),  Expect = 3e-104, Method: Compositional matrix adjust.
 Identities = 222/454 (49%), Positives = 335/454 (74%), Gaps = 4/454 (0%)

Query  144  EPGLSRMRVLVIGAGDAGEMLLREIQKRHAARYEPVGLVDDDRAKRGEQIHG-IRVVGTI  202
            + ++ +   LV+GAG++G +L+RE+ + +  R +PV  VDDD+ K+   I   ++V G +
Sbjct  135  DNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYV  194

Query  203  DEIPSVARELRVDEAIIAVPSASGAQMRRIVDLCKQASVRFKTMPGVDQLIDGRVAVSQL  262
            ++IP + + +R+   IIA+P+ S  ++  I  +C+  +V +  MP +++++ G + V++L
Sbjct  195  EDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNL  254

Query  263  RDVDIEDLLGRDPVKLDMVSISATIAGRVVLVSGAGGSIGSEICRQVCRFGPSALVLVER  322
            + V++EDLLGRDPV LDM  IS  ++ + +LV+GAGGSIGSEICRQV +F+P  ++L+ +
Sbjct  255  KKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGH  314

Query  323  AENNLFHIHRELLARF-PKLELVPCIGDVSDAQRMAAVFERRRPAIVFHAAAHKHVPMME  381
            +EN+++ IH+EL   +  ++E+VP I+DV +  R+  V +  +P  V+HAAAHKHVP+ME
Sbjct  315  GENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLME  374

Query  382  WNPGEAVKNNVFGTKTLADMADRYGVERFVMISTDKAVNPTSVMGASKRVAEIYVQALSQ  441
             NP EA++NN++GTK +A+ A    V +FVMISTDKAVNP++VMGA+KR+AE+ +Q+L++
Sbjct  375  YNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNE  434

Query  442  -RSKTRFVTVRFGNVLGSAGSVVPIFKEQIAAGGPVTVTHPEMTRYFMTIPEASQLVLEA  500
              SKT FV+VRFGNVLGS GSV+P+FK+QI +GGPVTVTHPEMTRYFMTIPEAS+LVL+A
Sbjct  435  DNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQA  494

Query  501  GTMGNGGEIFILDMGEPVKIADLARELITLSGLTPGEDIEIVFSGVRPGEKLFEELSVDS  560
            G++++GGE+F+LDMG PVKI DLA++LI LSG    EDI I FSG+RPGEKL+EEL   +
Sbjct  495  GALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIGIEFSGIRPGEKLYEELLNKN  553

Query  561  ESADKTGHPKIFVGRFRPHAWEQIQRQLHDLAAS  594
            E   +    KI+ G+       +++  ++DL  +
Sbjct  554  EIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINN  587

138) DHBDCA_p2687 in NC_018866


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  372 bits (1399),  Expect = 3e-104, Method: Compositional matrix adjust.
 Identities = 257/534 (49%), Positives = 369/534 (70%), Gaps = 17/534 (3%)

Query  61   VFHF-FGLYKNIWRYASVRELLSIVYAVTVGAALTVMVVYFISPLRLPHSVSVYF--WLM  117
            +F + F LY   W YASV EL+S++ AVT +  +T+++V     +  +  + +YF  W+M
Sbjct  57   IFAYVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLV--SLLISESPFLRLYFITWMM  114

Query  118  LIVLIGGLR-FSQRMRQENAIFAVSNRSQRKVLIIGAGDAGVLALRELKKRDFQEGVPVG  176
             ++LIGG R F +  R+    F  +   ++  L++GAG++G + +RE+ + +     PV 
Sbjct  115  HLLLIGGSRLFWRVYRR---YFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVL  171

Query  177  FIDDSKSKINLHV-QGFPVLGSRDDIRRIVEDYAVDEIIIAIPSADGETVREIVEICKET  235
             +DD K+K ++ + +   V G  +DI  +V  + +  IIIAIP+     + EI  IC+  
Sbjct  172  AVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIE  231

Query  236  RAVLKIMPGVYDILSGKITVSSLREVQVEDLLGREQVSVDLEEVAGYLKNQVVLVTGAGG  295
               L  MP + D+LSG + V++L+ V+VEDLLGR+ V +D+  ++  L N+ +LVTGAGG
Sbjct  232  GVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGG  291

Query  296  SIGSELCRQIVKFFPSKLILAGHGENCIFDIEQELKNS-----PIVTEIFDIKDAGKVNL  350
            SIGSE+CRQ+ KF P K+IL GHGEN I+ I+QEL ++      +V  I D+++  ++  
Sbjct  292  SIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILE  351

Query  351  VFEKYKPYVVFHAAAHKHVPLMEVNPEEALKNNVMGTSNLAAAADKNGVRTFVLISTDKA  410
            V + +KPY V+HAAAHKHVPLME NP+EA++NN++GT N+A +A    V  FV+ISTDKA
Sbjct  352  VMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKA  411

Query  411  VNPTSIMGASKRMAEMVIQDY-DKRSETKFVAVRFGNVLGSRGSVIPTFKKQIMAGGPVT  469
            VNP+++MGA+KR+AEMVIQ   +  S T FVAVRFGNVLGSRGSVIP FK+QI +GGPVT
Sbjct  412  VNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVT  471

Query  470  VTDPRMTRYFMTIPEASQLVIQAGAMASGGEIFILDMGKPVKIVDLAKDLIRLSGFEPGK  529
            VT+P MTRYFMTIPEAS+LV+QAGA+A GGE+F+LDMGKPVKIVDLAK+LIRLSG     
Sbjct  472  VTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEE  530

Query  530  DIQIEFTGVRPGEKLFEEILTSEEGTTATKHKRIFVARPNHIDHEAIEGLVQKI  583
            DI IEF+G+RPGEKL+EE+L  +E        +I+ ++ +H     ++ +V+ +
Sbjct  531  DIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDL  584

139) MPTP_0527 in NC_015516


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  371 bits (1396),  Expect = 4e-104, Method: Compositional matrix adjust.
 Identities = 252/485 (52%), Positives = 362/485 (75%), Gaps = 7/485 (1%)

Query  22   RFVLLTYLVANFLIITSRLVWCTIIEAKSKSKVHGNQVYPKQTLIIGAGEAGQLLLNSLH  81
            R+ ++T ++  +LI  SRL W        +    +N V  K TL++GAG++G +L+  + 
Sbjct  106  RLYFITWMMHLLLIGGSRLFWRVY-----RRYFIDNAVEKKATLVVGAGQGGSVLIREML  160

Query  82   TSAKNSGIKVIGLIDDAPDKYHTYLSGVRVLGNTKQIPNIIKDYDIEMLTLAIPSIHPEQ  141
             S       V+++ DD   +  T    V+V G   +IP+++K + I  + +AIP++   +
Sbjct  161  RSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKR  220

Query  142  LKRILDIITPLGLPVNSMPDLEEVASGNITISRLKEIDVIDLLGREEVQLNIEQIKDQLS  201
            L+ I  I    G+ +  MP++E+V SG++ ++ LK ++V DLLGR+ V+L++  I  +L+
Sbjct  221  LNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELT  280

Query  202  NKVILVTGAGGSIGSEICRQVMNFNPKTLILLGHGENSIYLIEKELHNTFQHTSTEIIPI  261
            NK ILVTGAGGSIGSEICRQV +F+P+ +ILLGHGENSIY I++EL +T+ +   E++P+
Sbjct  281  NKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGN-RIEFVPV  339

Query  262  IADIQDKQQMVEIMKRFHPQIVYHAAAHKHVPLMEYNPQSAIKNNIFGtkntaeaakaan  321
            IAD+Q+K +++E+M+ F P  VYHAAAHKHVPLMEYNP+ AI+NNI+GTKN AE+AK ++
Sbjct  340  IADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGE  399

Query  322  vanFVMISTDKAVNPPNIMGATKRVAELIITNLN-KTGNTKFCAVRFGNVLGSRGSVIPL  380
            V++FVMISTDKAVNP+N+MGATKR+AE++I +LN   ++T F AVRFGNVLGSRGSVIPL
Sbjct  400  VSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPL  459

Query  381  FKEQINKGGPITITDFRMTRYFMTIPEASRLVIQAGALARGGEIFILDMGDPVKIIDLAK  440
            FK+QI+ GGP+T+T+  MTRYFMTIPEASRLV+QAGALA+GGE+F+LDMG PVKI+DLAK
Sbjct  460  FKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAK  519

Query  441  NMIKLSGYKENEIKIIETGSRPGEKLYEELLVNKKKNHKQVFDKIFIEDIRGSFPDEVLP  500
            N+I+LSG KE++I I  +G RPGEKLYEELL ++  + +QV++KI+   +   +  EV  
Sbjct  520  NLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDL  579

Query  501  FVDNL  505
            +V++L
Sbjct  580  IVEDL  584

140) Cbei_4629 in NC_009617


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  368 bits (1382),  Expect = 5e-103, Method: Compositional matrix adjust.
 Identities = 245/514 (48%), Positives = 372/514 (73%), Gaps = 9/514 (1%)

Query  56   YLFKMYESLWHLTGTDEFLLGVGGNILAGIISIGYTRILGNTIP-LNVSVVGILLSIFFV  114
            Y+F++Y+  W+ ++  E++  + +   + ++++    +L +  P L +  +  ++ ++++
Sbjct  60   YVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLI  119

Query  115  LGYRILYRVYRRTLLYIPFKYSSDQRRVMIVGAGSAGTMLINEMMARRELKYNPIVLIDD  174
             G R++ RVYRR   Y+ +  + +++  ++VGAG +G++LI EM+  ++++ +P++ +DD
Sbjct  120  GGSRLFWRVYRR---YF-IDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDD  175

Query  175  DKSKLGKRISG-VKIEGNRYDIPYIVGDQEIDLILIAIPSLDAKNKAEIIEICKNTNCKL  233
            DK+K    I+  VK++G   DIP +V    I  I+IAIP+L  K   EI  IC+     L
Sbjct  176  DKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVEL  235

Query  234  QIIPGMYEILSGDATVSRIKDVDLEDLLGRDPIQLDNKGISDYIEGKTILVTGGGGSIGS  293
              +P + ++LSG+  V+ +K V++EDLLGRDP++LD   IS  +  KTILVTG+GGSIGS
Sbjct  236  FKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGS  295

Query  294  ELCRQISVYNPKRLIIFDIYENNVYDIQNELREEFPD-MNLTVLIGSVRDKKRLHEIFTK  352
            E+CRQ+S ++P+++I+++  EN++Y I++EL   + + +++  +I+ V++K R+ E+   
Sbjct  296  EICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNE  355

Query  353  YRVNVVFHAAAHKHVPLMEDSPKEAIKNNVFGTLNLALEASEANVERFVMISTDKAVNPT  412
            ++   V+HAAAHKHVPLME +P EAI+NN++GT N+A  A E++V +FVMISTDKAVNP+
Sbjct  356  FKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPS  415

Query  413  NIMGATKRLCEMIIQAM-DKQSRTEFVAVRFGNVLGSNGSVIPLFKRQIANGGPVTVTHK  471
            N+MGATKR+ EM+IQ++ + +S+T FVAVRFGNVLGS GSVIPLFK QI +GGPVTVTH 
Sbjct  416  NVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHP  475

Query  472  KIIRYFMLIPEAAQLVLQAGAFARGGEVFVLDMGKPVKIYDLACDLIRLSGLEPNRDIKI  531
             + RYFM IPEA++LVLQAGA+A+GGEVFVLDMGKPVKI DLA +LIRLSG   + DI I
Sbjct  476  EMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIGI  534

Query  532  VVTGLRPGEKLYEELLMSEEGLENTVHNKIYVGK  565
              +G+RPGEKLYEELL  +E   + V +KIY GK
Sbjct  535  EFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGK  568

141) Gbem_1633 in NC_011146


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  367 bits (1379),  Expect = 1e-102, Method: Compositional matrix adjust.
 Identities = 244/534 (46%), Positives = 379/534 (71%), Gaps = 11/534 (2%)

Query  60   GMYRCIWRYASLRDAYEIFKvvtlssvvsalalllIKGPFALPRSIYFLDWFLLFSLVAG  119
             +Y+  W YAS+ +   ++K VT S VV+ L + L+ +  ++ R +YF+ W + + L++G
Sbjct  63   NLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLR-LYFITWMMHLLLIGG  121

Query  120  SRLVWRVYRETRFFPSLHKGKK-TLIIGAGEAGNLLLKEIRKEADSPYNVIGFVDDDIEK  178
            SRL WRVYR  R+F      KK TL++GAG++G++L++E+ +  D   + +  VDDD +K
Sbjct  122  SRLFWRVYR--RYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNK  179

Query  179  RGMRLSG-VRVLGGTNRLCAMVRKHAIEEVIFAIPSGDGELMRRVIANCKRSKARFKTLP  237
            + M ++  V+V G  + +  +V+K  I  +I+AIP+     +  +   C+     +  +P
Sbjct  180  QKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMP  239

Query  238  GITAIVDGKVSMSQIKDVEIEDLLGRDPVMLDQTAIRNYLTDKRVLVTGAAGSIGSEICR  297
             I  ++ G + ++++K VE+EDLLGRDPV LD + I   LT+K +LVTGA+GSIGSEICR
Sbjct  240  NIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICR  299

Query  298  QVARFKPAKLVLFDHAETPLFYIEKELAAAFPD-LRIIPMVGDVKNQERVEAVFDEFIPE  356
            QV++F P K++L++H+E +++ I++EL+ ++ + + ++P+++DV+N+ R+  V +EF P 
Sbjct  300  QVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPY  359

Query  357  VVFHAAAYKHVAMMEYNPAEAVLNNVLGSRIVADAAHKTKVSNFVMVSTDKAVNPTNVMG  416
             V+HAAA KHV++MEYNP EA+ NN+LG++ VA++A    VS+FVM+STDKAVNP+NVMG
Sbjct  360  AVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMG  419

Query  417  ATKRSAEIYVQALA-AKSQTKFTTVRFGNVLGSNGSVIPLFKEQIRKGGPVTVTHSDVVR  475
            ATKR AE+ +Q+L   +S+T F +VRFGNVLGS GSVIPLFK+QI  GGPVTVTH+++ R
Sbjct  420  ATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTR  479

Query  476  YFMTIPEASQLVMQAGCIGRGGEIFVLDMGEPVRILSLAEELIRLSGLIPYKEMDIQFTG  535
            YFMTIPEAS+LV+QAG +++GGE+FVLDMG PV+I+ LA +LIRLSG     +++I+F+G
Sbjct  480  YFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKE-EDIGIEFSG  538

Query  536  LKPGEKLFEELLINGEGIKPTSHKKI---RVMAPVETDLRRVSQDLDELFGHAR  586
            ++PGEKL+EELL + E        KI   +V   + T++  + +DL + F+  +
Sbjct  539  IRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSKEK  592

142) Clocl_1008 in NC_016627


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  366 bits (1377),  Expect = 1e-102, Method: Compositional matrix adjust.
 Identities = 238/514 (47%), Positives = 368/514 (72%), Gaps = 8/514 (1%)

Query  57   YIFGIYSMLWNYASVEELIRIFLATITSSITQIFLAAYFNVLFPP--SVYIIAWMITFFF  114
            Y+F +Y   W+YASV EL+ + L ++TSSI   +L   + +  +P   +Y+I+WM+ +++
Sbjct  60   YVFNLYHRAWEYASVSELMSV-LKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLL  118

Query  115  VGGVKFLRRIVRSLrikkrkgihrkrVMIVGAGEAASLLIKEMKNNKHSIYEPVVAIDDD  174
            +GG ++++R+ R   I +         ++VGAG+++S+LI+EM  +++   +PV+A+DDD
Sbjct  119  IGGSRLFWRVYRRYFIDNAVEKKA--TLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDD  176

Query  175  HKKHNTQING-VPIAGGREKIVKTAMDMAVEEIVLAIPSITRKETFELINICQKTGCKLK  233
             +K++  I   V + G  E I        +  I++AIP++++K   E+ +IC+  G  L 
Sbjct  177  KNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELF  236

Query  234  VLPSVYSLVNGEVSIKKIRDVTIEDLLQRDEISLSVEEISGYLKGETILVTGGGGSIGSE  293
             +P++  +++GE+ +++++ V +EDLL RD + L +  IS  L   TILVTG+GGSIGSE
Sbjct  237  KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSE  296

Query  294  LCRQIAAYEPESLLIFDIYENNAYELQNELEQKYKGSLDIKVIIGSIRDKKRLDYVFSRH  353
            +CRQ++ ++P+ +++++  EN+ Y +++EL + Y   +++  +I+ +++K R+  V +  
Sbjct  297  ICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEF  356

Query  354  RPGIVFHAAAHKHVPLMEFNPQEAVKNNVYGTLNLAECAHQYNCKKFVLISTDKAVNPTS  413
            +P  V+HAAAHKHVPLME+NP+EA++NN+ GT N+AE A + +  KFV+ISTDKAVNP++
Sbjct  357  KPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSN  416

Query  414  IMGATKRIAELIIQYMN-SISKTKFSAVRFGNVLGSNGSVIPLFKKQIENGGPITITHPD  472
            +MGATKRIAE++IQ +N   SKT F AVRFGNVLGS GSVIPLFK+QIE+GGP+T+THP+
Sbjct  417  VMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPE  476

Query  473  VTRYFMTIPEAVSLVIQSGAMMEGGEIFVLDMGKPVKIIDLAKTLISLSGLTPYVDIDFE  532
            +TRYFMTIPEA  LV+Q+GA+ +GGE+FVLDMGKPVKI+DLAK LI LSG     DI++E
Sbjct  477  MTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKE-EDIGIE  535

Query  533  YIGLRPGEKLYEELLMSEEEVRITKHDKIFIEKV  566
            + G+RPGEKLYEELL  +E       +KI+  KV
Sbjct  536  FSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKV  569

143) capD in NC_015291


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  366 bits (1377),  Expect = 2e-102, Method: Compositional matrix adjust.
 Identities = 242/453 (54%), Positives = 344/453 (76%), Gaps = 9/453 (1%)

Query  132  PRITWQLIYSKRKQGSGDGEHRRTFLIGAGDGGALFMNSYQHPTSDLELVGILDNDEKKK  191
            +R+ W+ +Y +R       E + T+++GAG+GG++++      + D+ +  +L  D+ K+
Sbjct  122  SRLFWR-VY-RRYFIDNAVEKKATLVVGAGQGGSVLIRE-MLRSQDMRMQPVLAVDDDKN  178

Query  192  GQKLG---GIPVLGSYDNLPELAKRHQIERVIVAIPSLDPSEYERILQMCNKLGVKCYKM  248
             QK+     + V G  +++PEL K+ +I ++I+AIP+L     + I ++CN  GV  +KM
Sbjct  179  KQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKM  238

Query  249  PKVETVVQGLHQPGSGFQKIDITDLLGRQEIRLDESRLGTEITGKTILVTGAGGSIGSEI  308
            P++E V+ G +   + ++K+++ DLLGR+ + LD + ++ E+T KTILVTGAGGSIGSEI
Sbjct  239  PNIEDVLSG-ELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEI  297

Query  309  CRQVSRFNPERIVLLGHGENSIYLVYHELIRTFQG-IDYVPVIADIQDYDRLLQVFEQYK  367
            CRQVS+F+P++I+LLGHGENSIY + +EL +T+   I++VPVIAD+Q+  R+L+V +++K
Sbjct  298  CRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFK  357

Query  368  PAIVYHAAAHKHVPMMERNPKEAFKNNILGTYNVAKAVDEAKVPKMVMISTDKAVNPPNV  427
            P  VYHAAAHKHVP+ME NP EA++NNILGT NVA +  E+ V+K VMISTDKAVNP+NV
Sbjct  358  PYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNV  417

Query  428  MGATKRVAELIVTGFNQ-RSKSTYCAVRFGNVLGSRGSVIPVFERQIAEGGPVTVTDFRM  486
            MGATKR+AE+++ ++N+  SK+++ AVRFGNVLGSRGSVIP+F  QI  GGPVTVT+  M
Sbjct  418  MGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEM  477

Query  487  TRYFMTIPEASRLVIHAGAYAKDGEVFILDMGKPVKIYDLAKKMVLLSGHTESEIPIVEV  546
            TRYFMTIPEASRLV++AGA A++GEVF+LDMGKPVKI DLAK+++ LSG  E +I I   
Sbjct  478  TRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFS  537

Query  547  GIRPGEKLYEELLVSTELVDNQVMDKIFVGKVN  579
            GIRPGEKLYEELL   E+  +QV +KI+ GKV+
Sbjct  538  GIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVD  570

144) GM21_2582 in NC_012918


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  365 bits (1373),  Expect = 3e-102, Method: Compositional matrix adjust.
 Identities = 238/533 (45%), Positives = 378/533 (71%), Gaps = 9/533 (1%)

Query  60   GMYRCIWRYASLQDAYEIFKAVTLSSVVSAFTFLFMKGPFALPRSIYFLDWFLLFSMVAC  119
             +Y+  W YAS+ +   ++KAVT S VV+ +   ++ +  ++ R +YF+ W + + +++ 
Sbjct  63   NLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLR-LYFITWMMHLLLIGG  121

Query  120  SRLLWRVYRETKFLPSLHKGKKTLIIGAGEAGNLLLKEIRKEADSPYNVIGFVDDDIEKR  179
            SRL+WRVYR   F+ +    K TL++GAG++G++L++E+ +  D   + +  VDDD +K+
Sbjct  122  SRLFWRVYRRY-FIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQ  180

Query  180  GMRLSG-VRVLGGTSRLCALVRKHAIEEVIFAIPSGDRELMRRVIANCERGKARFKTLPG  238
             M ++  V+V G    +  LV+K  I  +I+AIP+  +  +  +   C+     +  +P 
Sbjct  181  KMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPN  240

Query  239  ITAIVDGKVSMSQIKDVEIEDLLGRDPVLLDQTAIRNYLTDKRVLVTGAAGSIGSEICRQ  298
            I  ++ G + ++++K VE+EDLLGRDPV LD + I   LT+K +LVTGA+GSIGSEICRQ
Sbjct  241  IEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQ  300

Query  299  VARFKPAKLVLFDHAETPLFYIEKELAASFPD-LRLIPMVGDVKNQERVEAVFDEFCPEV  357
            V++F P K++L++H+E +++ I++EL+ ++ + + ++P+++DV+N+ R+  V +EF P  
Sbjct  301  VSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYA  360

Query  358  VFHAAAYKHVAMMEYNPAEAVLNNVLGSRIVADAAHKTKVRNFVMVSTDKAVNPTNVMGA  417
            V+HAAA KHV++MEYNP EA+ NN+LG++ VA++A    V +FVM+STDKAVNP+NVMGA
Sbjct  361  VYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGA  420

Query  418  TKRSAEIYVQALA-AKSQTKFTTVRFGNVLGSNGSVIPLFKEQIKNGGPVTVTHSDVVRY  476
            TKR AE+ +Q+L   +S+T F +VRFGNVLGS GSVIPLFK+QI +GGPVTVTH+++ RY
Sbjct  421  TKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRY  480

Query  477  FMTIPEASQLVMQAGCIGRGGEIFVLDMGDPVRILSLAEELIRLSGLVPYKEMDIQFTGL  536
            FMTIPEAS+LV+QAG +++GGE+FVLDMG PV+I+ LA +LIRLSG     +++I+F+G+
Sbjct  481  FMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKE-EDIGIEFSGI  539

Query  537  KPGEKLFEELLINGEGIKPTSHKKI---RVMAPVETDLRRVSQDFDEMFAHAR  586
            +PGEKL+EELL + E        KI   +V   + T++  + +D+ + F+  +
Sbjct  540  RPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSKEK  592

145) Gmet_1338 in NC_007517


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  365 bits (1372),  Expect = 4e-102, Method: Compositional matrix adjust.
 Identities = 239/495 (49%), Positives = 361/495 (73%), Gaps = 6/495 (1%)

Query  60   GMYRSIWKYASLQDGIEIFKVVTLSTLITSFVLFFLHDTSAMPRSIYVLDWVLLFAMVST  119
             +Y+  W YAS+ + + ++K VT S ++T +++ +L   S+  R +Y + W++ + +++ 
Sbjct  63   NLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLR-LYFITWMMHLLLIGG  121

Query  120  SRLLWRVYRETYIIPRYHTGKRTLIVGAGEAGNLLLKEIRKQKNPANQVIGFLDDDPAKQ  179
            SRL+WRVYR  Y+I      K TL+VGAG++G++L++E+ + ++   Q +  +DDD  KQ
Sbjct  122  SRLFWRVYR-RYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQ  180

Query  180  GMRLGG-IPVMGDLGRLRAAIRKHRIEEVIIAIATAQGALTRQVVSCCKETKVRFKTLPG  238
             M +   + V G +  +   ++K RI  +IIAI+T       ++   C+   V +  +P 
Sbjct  181  KMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPN  240

Query  239  IKDIIDGTVSISQIKDVEIEDILGREPVKLDLETIRGYLTNKRVLVTGAAGSIGSEICRQ  298
            I D++ G + ++++K VE+ED+LGR+PV LD+  I   LTNK +LVTGA+GSIGSEICRQ
Sbjct  241  IEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQ  300

Query  299  VAAFSPYKLLLFESAETPLYQIEKELTASHPD-LRIIPVIGDVRDQARVEMVFDEFQPEV  357
            V+ F P K++L+  +E ++Y I++EL+ +  + + ++PVI+DV++++R+  V +EF+P  
Sbjct  301  VSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYA  360

Query  358  VFHAAAYKHVPMMEYNPVEAVTNNIGGTRTLANAAHRFGVKNFVMISTDKAVNPTNIMGA  417
            V+HAAA KHVP+MEYNP EA+ NNI GT+ +A++A    V +FVMISTDKAVNP+N+MGA
Sbjct  361  VYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGA  420

Query  418  SKRVAEMYVQGLAR-KSRTNFTTVRFGNVLGSNGSVIPLFKEQIKAGGPVTVTDPKVIRY  476
            +KR+AEM +Q+L   +S+T+F +VRFGNVLGS GSVIPLFK+QI +GGPVTVT+P + RY
Sbjct  421  TKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRY  480

Query  477  FMTIPEACQLVLQAGCIGNGGEIFVLDMGEPVRILDLAEELIRLSGFVPHEEIDIVFTGL  536
            FMTIPEA +LVLQAG +++GGE+FVLDMG PV+I+DLA +LIRLSG   +E+I+I F+G+
Sbjct  481  FMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIGIEFSGI  539

Query  537  RPGEKLFEELLIDGE  551
            RPGEKL+EELL   E
Sbjct  540  RPGEKLYEELLNKNE  554

146) Nther_2497 in NC_010718


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  365 bits (1370),  Expect = 5e-102, Method: Compositional matrix adjust.
 Identities = 236/493 (48%), Positives = 368/493 (75%), Gaps = 16/493 (3%)

Query  60   VFRLYHRLWSYASIHDVIVLGTAITIGSISVYAATVAL--DMMFPRSIYLISLFLNLVFL  117
            VF LYHR W YAS+ +++ +  A+T + +        L  +  F R +Y+I+  ++L+++
Sbjct  61   VFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLR-LYFITWMMHLLLI  119

Query  118  GGYRLGFRVLNIYKRFGLSPLKKQKPKNRKNVLIVGAGDAGNMALKELNQHQLDLSVNIV  177
            GG RL  RV   Y+R+ +     +++ ++K  L+VGAG++G++ ++E+ + Q D+ ++ V
Sbjct  120  GGSRLFWRV---YRRYFI-----DNAVEKKATLVVGAGQGGSVLIREMLRSQ-DMRMQPV  170

Query  178  GFLDDDQEKQGCRVNG-VKVLGSTDELVKISKKKDVDEVVIAMPSAPQQVIRYLIKTCSD  236
              +DDD++KQ   +   VKV G  +++  + KK  +  ++IA+P+ +Q+ +  + K C+ 
Sbjct  171  LAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNI  230

Query  237  YSIKTKIIPAVHDLISGRVSINHLREVEIEDLLKRDPIELDINQIAGYLTNKVVLVTGAG  296
             ++    +P ++D++SG + +N+L+ VE+EDLL RDP+ELD+  I+  LTNK +LVTGAG
Sbjct  231  EGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAG  290

Query  297  GSIGSELVRQIANFNPQTILLLGHGENSIFEIYREMVEKFPKN-RLVPIIADVKDREKIF  355
            GSIGSE+ RQ+++F+PQ I+LLGHGENSI+ I +E+   + +   +VP+IADV+++ +I+
Sbjct  291  GSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRIL  350

Query  356  QIAKDYEPDVVFHAAAHKHVPLMEQNPEEAIKNNIYGTKNLVDAAHHHKSQRFVLVSTDK  415
            ++ +++ P  V+HAAAHKHVPLME NP+EAI+NNI GTKN+ ++A +    +FV++STDK
Sbjct  351  EVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDK  410

Query  416  AVNPTSVMGATKRVAELIVENMAQ-TSETKYTAVRFGNVLGSRGSVIPHFKEQISKGGPV  474
            AVNP++VMGATKR+AE++++++ +  S T + AVRFGNVLGSRGSVIP FK+QI  GGPV
Sbjct  411  AVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPV  470

Query  475  TITHPEMTRYFMTIPEASQLVIEAGGMSKGGEIYVLDMGQPVKIVDLAKDLIKLSGLEPE  534
            T+THPEMTRYFMTIPEAS+LV++AG++++GGE++VLDMG+PVKIVDLAK+LI+LSG   E
Sbjct  471  TVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKE  529

Query  535  KDIKLSYTGIRPG  547
             DI + ++GIRPG
Sbjct  530  EDIGIEFSGIRPG  542

147) M7W_1029 in NC_020207


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  363 bits (1365),  Expect = 1e-101, Method: Compositional matrix adjust.
 Identities = 257/444 (58%), Positives = 345/444 (78%), Gaps = 6/444 (1%)

Query  134  RYVSADSA--KNTLIVGAGEGGRILYNSFLGSKTAQDIHVVGFVDDDPNKRNTYLSGK-K  190
            RY   ++   K TL+VGAG+GG +L    L S+  +   V++ VDDD NK++  ++ + K
Sbjct  131  RYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLA-VDDDKNKQKMTITERVK  189

Query  191  VLGALKDIPELIEKYDIQMLTIAIPSLSRKKLRRIFELVESARVKVNTMPSIEELASGKI  250
            V G + DIPEL+ K+ I+ + IAIP+LS+K+L  I  + +   V +  MP+IE++ SG +
Sbjct  190  VQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGEL  249

Query  251  SVSKLKTIDVVDLLGRDEVKLDIESIKDQITDKVILVTGAGGSIGSEICRQIIQFNPAKL  310
             V++LK ++V DLLGRD V LD+  I  ++T+K ILVTGAGGSIGSEICRQ+ +F+P K+
Sbjct  250  EVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKI  309

Query  311  LLLGHGENSIYLIDRELRTHHQNCPTEIVPIIADIQDREKINEIMEQYHPDIVYHAAAHK  370
            +LLGHGENSIY I++EL     N   E+VP+IAD+Q++ +I E+M+++ P  VYHAAAHK
Sbjct  310  ILLGHGENSIYSIHQELSKTYGN-RIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHK  368

Query  371  HVPLMEYNPKEAVKNNIFGTknvaeaakaakvknFVMVSTDKANNPPNVMGSTKRIAEMI  430
            HVPLMEYNP EA++NNI+GTKNVAE+AK + V +FVM+STDKA NP+NVMG+TKRIAEM+
Sbjct  369  HVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMV  428

Query  431  VTGLNEEGC-TKFSAVRFGNVLGSRGSVIPVFREQIAQGGPITVTDFRMTRYFMTIPEAS  489
            + +LNE+   T F AVRFGNVLGSRGSVIP+F++QI  GGP+TVT+  MTRYFMTIPEAS
Sbjct  429  IQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEAS  488

Query  490  RLVIQSGALAKGGEIFILDMSEPVKIVDLAKNMIRLSGYSEDEIEIIETGIRPGeklyee  549
            RLV+Q+GALA+GGE+F+LDM+ PVKIVDLAKN+IRLSG  E++I I  +GIRPGEKLYEE
Sbjct  489  RLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEE  548

Query  550  llldkeRNDEAVYEKIFVGNIKGY  573
            LL  +E + + VYEKI+ G++  Y
Sbjct  549  LLNKNEIHPQQVYEKIYRGKVDHY  572

148) CbC4_0991 in NC_015425


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  362 bits (1361),  Expect = 2e-101, Method: Compositional matrix adjust.
 Identities = 243/518 (47%), Positives = 360/518 (70%), Gaps = 13/518 (2%)

Query  32   VFHLYDYIWKYASVDELMSIVYSVSLsniififysyfisyKLLSSVHYRFPATVHIILWV  91
            VF+LY+  W YASV ELMS++ +V+            +    L   +  F   + +I W+
Sbjct  61   VFNLYHRAWEYASVSELMSVLKAVT------SSIVVTLLLVSLLISESPF-LRLYFITWM  113

Query  92   LSILALGGTRFMYRIVGRNENTELLNNKVSNVLIIGAGDAGAMLIKEIKKHQSLNYNIVG  151
            + +L +GG+R+  R+  R    + +++K +  L++GAG++G++LI+E+ + Q +  + V 
Sbjct  114  MHLLLIGGSRLFWRVYRRYFIDNAVEKKAT--LVVGAGQGGSVLIREMLRSQDMRMQPVL  171

Query  152  LIDDDLSKIGQVING-IKILGTREEITRICENNNVEEIFIALPSAPLKERKEIYNSCKKT  210
             +DDD +K    I   +K+ G  E+I  +  +  +  I+IA+P+ + K  +EI + C+  
Sbjct  172  AVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIE  231

Query  211  GCKLKTLPGIYEIINGAVNISQLRDVDINDLLGRDPIQLNNENINEYINGKVVLVTGGGG  270
            G  L  +P I ++++G +++++L+ V+++DLLGRDP++L+   I+  +  K +LVTG+GG
Sbjct  232  GVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGG  291

Query  271  SIGSELCRQIVKFNPKKLVILDIYENNAYDLQMELRYKYPE-LDMDVIIASIRDFKRLQE  329
            SIGSE+CRQ+ KF+P+K+++L+  EN+ Y ++ EL   Y + ++   +IA +++  R+ E
Sbjct  292  SIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILE  351

Query  330  VFEKYKPYVVFHAAAHKHVPLMESNPAEAIKNNIFGTYNVVKCSHIYKVKRFVQISTDKA  389
            V + +KPY V+HAAAHKHVPLME NP EAI+NNI+GT NV   +    V +FV ISTDKA
Sbjct  352  VMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKA  411

Query  390  VNPTNVMGATKRFCEKIIQAFAKE-SETEYVAVRFGNVLGSNGSVIPLFKRQIKEGGPVT  448
            VNP+NVMGATKR+ E +IQ++  + S T +VAVRFGNVLGS GSVIPLFK QI  GGPVT
Sbjct  412  VNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVT  471

Query  449  VTHPEINRFFMTIPEAAQLVIQAGAMARGGEIFVLDMGEPVKIVDLARDLIRLSGLKPGE  508
            VTHPE+ R+FMTIPEA++LV+QAGA+A+GGE+FVLDMG PVKIVDLA++LIRLSG K  E
Sbjct  472  VTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEE  530

Query  509  DIKIEYTGLRPGEKLYEELLMDEVALTSTEHEKIFVEK  546
            DI IE++G+RPGEKLYEELL  +        EKI+  K
Sbjct  531  DIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGK  568

149) SPPN_01040 in NC_015875


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  362 bits (1359),  Expect = 3e-101, Method: Compositional matrix adjust.
 Identities = 238/434 (55%), Positives = 331/434 (77%), Gaps = 7/434 (1%)

Query  151  EHRLTFLIGAGDGGALFMDSYQHPTSELELVGILDKDSKKKGQKLG---GIPVLGSYDNL  207
            E + T+++GAG+GG++++      + ++ +  +L  D  K+ QK+     + V G  +++
Sbjct  139  EKKATLVVGAGQGGSVLIRE-MLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDI  197

Query  208  PELVKHHQIERVIVAIPSLDPSEYERILQMCNKLGVKCYKMPKVETVVQGLHQAGTGFQK  267
            PELVK  +I ++I+AIP+L     + I ++CN  GV  +KMP++E V+ G +     ++K
Sbjct  198  PELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSG-ELEVNNLKK  256

Query  268  IDITDLLGRQEIRLDESRLGAELTGKTILVTGAGGSIGSEICRQVSRFNPERIILLGHGE  327
            +++ DLLGR+ + LD + ++ ELT KTILVTGAGGSIGSEICRQVS+F+P++IILLGHGE
Sbjct  257  VEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGE  316

Query  328  NSIYLVYHELIRKFQG-IDYVPVIADIQDYDRLLQVFEQYKPAIVYHAAAHKHVPMMERN  386
            NSIY + +EL + +   I++VPVIAD+Q+  R+L+V +++KP  VYHAAAHKHVP+ME N
Sbjct  317  NSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYN  376

Query  387  PKEAFKNNIRGTYNVAKAVDEAKVSKMVMISTDKAVNPPNVMGATKRVAELIVTGFNQ-R  445
            P EA++NNI GT NVA +  E+ VSK VMISTDKAVNP+NVMGATKR+AE+++ ++N+  
Sbjct  377  PHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDN  436

Query  446  SQSTYCAVRFGNVLGSRGSVIPVFERQIAEGGPVTVTDFRMTRYFMTIPEASRLVIHAGA  505
            S++++ AVRFGNVLGSRGSVIP+F  QI  GGPVTVT+  MTRYFMTIPEASRLV++AGA
Sbjct  437  SKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGA  496

Query  506  YAKDGEVFILDMGKPVKIYDLAKKMVLLSGHTESEIPIVEVGIRPGEKLYEELLVSTELV  565
             A++GEVF+LDMGKPVKI DLAK+++ LSG  E +I I   GIRPGEKLYEELL   E+ 
Sbjct  497  LAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIH  556

Query  566  DNQVMDKIFVGKVN  579
             +QV +KI+ GKV+
Sbjct  557  PQQVYEKIYRGKVD  570

150) Amet_0277 in NC_009633


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  362 bits (1360),  Expect = 3e-101, Method: Compositional matrix adjust.
 Identities = 243/514 (48%), Positives = 358/514 (70%), Gaps = 9/514 (1%)

Query  62   YAFGMYQNLWKYASIEAVFQIMIAAFVANTGVVSYMVLTQQGHLPRSIYLLMFILDMLLV  121
            Y F +Y+  W YAS+  +  ++ A   +    +  + L         +Y++  ++++LL+
Sbjct  60   YVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLI  119

Query  122  GGIRFSYRATRGLREHGFIRRKNCKR-VMIVGAGTAGAVVIKELKIHDNLNYKPVAVIDD  180
            GG R+  R  R    + FI     K+  ++VGAG +G+V+I+E+   +++  +PV  +DD
Sbjct  120  GGSRLFWRVYR----RYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDD  175

Query  181  DESKLGSKING-VPVLGDRYHIKKVAEMKQVDEIIIAIPSGFRQELKEIVEECSKTKCKL  239
            D +K    I   V V G   +I  +    ++  IIIAIP+  ++ L+EI   C+     L
Sbjct  176  DKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVEL  235

Query  240  KILPGIGELIDGKVSMKKARDVEIEDLLGRDAINIDLEEISEYLHNQVVLITGGGGSIGS  299
              +P I +++ G + +++ + VE+EDLLGRD++++D+  IS  L N+ +L+TG+GGSIGS
Sbjct  236  FKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGS  295

Query  300  ELCRQIATFNPKKLLILDNYENNAYDIQNELRRKYPE-LNLEVLIASVRERDRIEEIFGQ  358
            E+CRQ++ F+P+K+++L++ EN+ Y I++EL + Y + +++  +IA V+++ RI E+  +
Sbjct  296  EICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNE  355

Query  359  YLPEVIFHAAAHKHVPLMEANPQEAIKNNIFGTKNVAECADQFGAKRFVLISTDKAVNPT  418
            + P  ++HAAAHKHVPLME NP+EAI+NNI+GTKNVAE A +    +FV+ISTDKAVNP+
Sbjct  356  FKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPS  415

Query  419  NIMGATKRVAEMLIQSI-DLTSKTEFVAVRFGNVLGSNGSVIPLFKRQIAEGGPVTVTHP  477
            N+MGATKR+AEM+IQS+ +  SKT FVAVRFGNVLGS GSVIPLFK QI  GGPVTVTHP
Sbjct  416  NVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHP  475

Query  478  EVTRYFMTIPEAVQLVIQAGSMASGGEIFVLDMGEPVKIIDLARNLIRLSGMEPDVDMDI  537
            E+TRYFMTIPEA +LV+QAG++A GGE+FVLDMG PVKI+DLA+NLIRLSG   + D++I
Sbjct  476  EMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEE-DIGI  534

Query  538  KVVGLRPGEKLYEELLMDEEGLESTKHDKIFVGK  571
               G+RPGEKLYEELL  +E       +KI+ GK
Sbjct  535  EFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGK  568

151) epsC in NC_020291


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  362 bits (1361),  Expect = 3e-101, Method: Compositional matrix adjust.
 Identities = 243/514 (48%), Positives = 371/514 (73%), Gaps = 9/514 (1%)

Query  56   YLFKTYDSLWHLTGTDEFLLGVGGNILAGILSIGYTRIFGSTIP-LNVSVVGILLSIFFV  114
            Y+F+ Y+  W+ ++  E++  + +   + ++++    ++ S  P L +  +  ++ ++++
Sbjct  60   YVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLI  119

Query  115  LGYRILYRVYRRTLLYIPFKYSSDQRRVMIVGAGSAGTMIINEMMARRELKYNPIVLIDD  174
             G R++ RVYRR   Y+ +  + +++  ++VGAG +G+++I EM+  ++++ +P++ +DD
Sbjct  120  GGSRLFWRVYRR---YF-IDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDD  175

Query  175  DKTKLGKRISG-VKIEGNRYDIPYIVREQEIDLILIAIPSLDAKNKAEIIEICKDTNCKL  233
            DK K    I+  VK++G   DIP +V+   I  I+IAIP+L  K   EI  IC+     L
Sbjct  176  DKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVEL  235

Query  234  QIIPGMYEILSGDATVSRIKDVDLEDLLGRDPIQLDNKGISDYIEGKTILVTGGGGSIGS  293
              +P + ++LSG+  V+ +K V++EDLLGRDP++LD   IS  +  KTILVTG+GGSIGS
Sbjct  236  FKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGS  295

Query  294  ELCRQIAVFNPKRLIIFDIYENNVYDIQNELREEFPD-MNLTVLIGSVRDRKRLHEVFTK  352
            E+CRQ++ F+P+++I+++  EN++Y I++EL   + + +++  +I+ V+++ R+ EV   
Sbjct  296  EICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNE  355

Query  353  YKINVVFHAAAHKHVPLMEDSPKEAIKNNVFGTLNLALEASEANISRFVMISTDKAVNPT  412
            +K   V+HAAAHKHVPLME +P EAI+NN++GT N+A  A E+++S+FVMISTDKAVNP+
Sbjct  356  FKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPS  415

Query  413  NIMGATKRLCEMIIQAM-DKQSKTEFVAVRFGNVLGSNGSVIPLFKRQIANGGPVTVTHK  471
            N+MGATKR+ EM+IQ++ + +SKT FVAVRFGNVLGS GSVIPLFK QI +GGPVTVTH 
Sbjct  416  NVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHP  475

Query  472  KIIRYFMLIPEAAQLVLQAGAFAKGGEIFVLDMGKPVKIYDLACDLIKLSGLEPNRDIKI  531
             + RYFM IPEA++LVLQAGA+A+GGE+FVLDMGKPVKI DLA +LI+LSG   + DI I
Sbjct  476  EMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIGI  534

Query  532  VFTGLRPGEKLFEELLMSEEGLEDTVHKKIHVGK  565
             F+G+RPGEKL+EELL  +E   + V  KI  GK
Sbjct  535  EFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGK  568

152) capD in NC_008533


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  360 bits (1351),  Expect = 1e-100, Method: Compositional matrix adjust.
 Identities = 236/434 (55%), Positives = 331/434 (77%), Gaps = 7/434 (1%)

Query  151  EHRRTFLIGAGDGGALFMDSYQHPTSELELVGILDKDSKKKGQKLG---GIPVLGSYDNL  207
            E + T+++GAG+GG++++      + ++ +  +L  D  K+ QK+     + V G  +++
Sbjct  139  EKKATLVVGAGQGGSVLIRE-MLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDI  197

Query  208  PELAKRHQIERVIVAIPSLDPSEYERILQMCNKLGVKCYKMPKVETVVQGLHQAGTGFQK  267
            PEL K+ +I ++I+AIP+L     + I ++CN  GV  +KMP++E V+ G +     ++K
Sbjct  198  PELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSG-ELEVNNLKK  256

Query  268  IDITDLLGRQEIRLDESRLGAELTGKTILVTGAGGSIGSEICRQVSRFNPERIVLLGHGE  327
            +++ DLLGR+ + LD + ++ ELT KTILVTGAGGSIGSEICRQVS+F+P++I+LLGHGE
Sbjct  257  VEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGE  316

Query  328  NSIYLVYHELIRKFQG-IDYVPVIADIQDYDRLLQVFEQYKPAIVYHAAAHKHVPMMERN  386
            NSIY + +EL + +   I++VPVIAD+Q+  R+L+V +++KP  VYHAAAHKHVP+ME N
Sbjct  317  NSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYN  376

Query  387  PKEAFKNNIRGTYNVAKAVDEAKVSKMVMISTDKAVNPPNVMGATKRVAELIVTGFNQ-R  445
            P EA++NNI GT NVA +  E+ VSK VMISTDKAVNP+NVMGATKR+AE+++ ++N+  
Sbjct  377  PHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDN  436

Query  446  SQSTYCAVRFGNVLGSRGSVIPVFERQIAEGGPVTVTDFRMTRYFMTIPEASRLVIHAGA  505
            S++++ AVRFGNVLGSRGSVIP+F  QI  GGPVTVT+  MTRYFMTIPEASRLV++AGA
Sbjct  437  SKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGA  496

Query  506  YAKDGEVFILDMGKPVKIYDLAKKMVLLSGHTESEIPIVEVGIRPGEKLYEELLVSTELV  565
             A++GEVF+LDMGKPVKI DLAK+++ LSG  E +I I   GIRPGEKLYEELL   E+ 
Sbjct  497  LAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIH  556

Query  566  DNQVMDKIFVGKVN  579
             +QV +KI+ GKV+
Sbjct  557  PQQVYEKIYRGKVD  570

153) capD in NC_003098


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  360 bits (1351),  Expect = 1e-100, Method: Compositional matrix adjust.
 Identities = 236/434 (55%), Positives = 331/434 (77%), Gaps = 7/434 (1%)

Query  151  EHRRTFLIGAGDGGALFMDSYQHPTSELELVGILDKDSKKKGQKLG---GIPVLGSYDNL  207
            E + T+++GAG+GG++++      + ++ +  +L  D  K+ QK+     + V G  +++
Sbjct  139  EKKATLVVGAGQGGSVLIRE-MLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDI  197

Query  208  PELAKRHQIERVIVAIPSLDPSEYERILQMCNKLGVKCYKMPKVETVVQGLHQAGTGFQK  267
            PEL K+ +I ++I+AIP+L     + I ++CN  GV  +KMP++E V+ G +     ++K
Sbjct  198  PELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSG-ELEVNNLKK  256

Query  268  IDITDLLGRQEIRLDESRLGAELTGKTILVTGAGGSIGSEICRQVSRFNPERIVLLGHGE  327
            +++ DLLGR+ + LD + ++ ELT KTILVTGAGGSIGSEICRQVS+F+P++I+LLGHGE
Sbjct  257  VEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGE  316

Query  328  NSIYLVYHELIRKFQG-IDYVPVIADIQDYDRLLQVFEQYKPAIVYHAAAHKHVPMMERN  386
            NSIY + +EL + +   I++VPVIAD+Q+  R+L+V +++KP  VYHAAAHKHVP+ME N
Sbjct  317  NSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYN  376

Query  387  PKEAFKNNIRGTYNVAKAVDEAKVSKMVMISTDKAVNPPNVMGATKRVAELIVTGFNQ-R  445
            P EA++NNI GT NVA +  E+ VSK VMISTDKAVNP+NVMGATKR+AE+++ ++N+  
Sbjct  377  PHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDN  436

Query  446  SQSTYCAVRFGNVLGSRGSVIPVFERQIAEGGPVTVTDFRMTRYFMTIPEASRLVIHAGA  505
            S++++ AVRFGNVLGSRGSVIP+F  QI  GGPVTVT+  MTRYFMTIPEASRLV++AGA
Sbjct  437  SKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGA  496

Query  506  YAKDGEVFILDMGKPVKIYDLAKKMVLLSGHTESEIPIVEVGIRPGEKLYEELLVSTELV  565
             A++GEVF+LDMGKPVKI DLAK+++ LSG  E +I I   GIRPGEKLYEELL   E+ 
Sbjct  497  LAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIH  556

Query  566  DNQVMDKIFVGKVN  579
             +QV +KI+ GKV+
Sbjct  557  PQQVYEKIYRGKVD  570

154) Desmer_4120 in NC_018515


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  360 bits (1353),  Expect = 1e-100, Method: Compositional matrix adjust.
 Identities = 255/530 (49%), Positives = 379/530 (72%), Gaps = 33/530 (6%)

Query  69   IFS-LFGLYKRLWQYASINELLSIVYAVTVGT------------SSVILVIYFLAPMRYP  115
            IF+ +F LY R W+YAS++EL+S++ AVT +              S +L +YF++     
Sbjct  57   IFAYVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFIT-----  111

Query  116  NTVAVLLWLTTTFLIGGSRFLGRILQDSVFNLHLSGIPKRVliigagdagalaVRE-LKN  174
                   W+   +LIGGSR++ R+ +   + ++ +   K  L++GAG++G++ +RE L++
Sbjct  112  -------WMMHLLLIGGSRLFWRVYRR--YFIDNAVEKKATLVVGAGQGGSVLIREMLRS  162

Query  175  SNYREGYPIGIIDDAPEKQKLKLMG-IPVLGTRKDITRVVKSHEIEEVIIAMPSAPGDVI  233
             + R   P+  +DD  +KQK+ +   + V G   DI  +VK   I  +IIA+P+ +   +
Sbjct  163  QDMRMQ-PVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRL  221

Query  234  RDMTEICEKSGIVIRIIPGIYNYFSGLVDSLKIREVQIEDLLGREQVNLDIEEVAGYLEG  293
             ++  IC+  G+ +  +P I + +SG ++  +++ V++EDLLGR+ V+LD+  ++  L  
Sbjct  222  NEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTN  281

Query  294  ETVLITGAGGSIGSELCRQICRFNPQKLILVGRGENSIFDVEQELRSECPE-INLVTEIL  352
             T+L+TGAGGSIGSE+CRQ+ +F+PQK+IL+G+GENSI+ ++QEL     + I++V  I 
Sbjct  282  KTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIA  341

Query  353  DVKDREKVELVFRRFKPGVVFHAAAHKHVPLMERNPEEALKNNILGTYNVAEISDAAHVK  412
            DV+++ ++  V   FKP  V+HAAAHKHVPLME NP+EA++NNILGT NVAE +  ++V 
Sbjct  342  DVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVS  401

Query  413  IFVLISTDKAINPTSIMGATKRVAEMIIQSF-DEQSQTRFVAVRFGNVLGSRGSVIPTFK  471
             FV+ISTDKA+NP+++MGATKR+AEM+IQS+ +++S+T FVAVRFGNVLGSRGSVIP FK
Sbjct  402  KFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFK  461

Query  472  KQIAKGGPVTVTHPEMVRYFMTIPEAAQLVIQAGAMARGGEVFILDMGKPVKIVDLARDL  531
            +QI  GGPVTVTHPEM RYFMTIPEA++LV+QAGA+A+GGEVF+LDMGKPVKIVDLA++L
Sbjct  462  NQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNL  521

Query  532  IRLSGFDVDVDVKIEYTGIRPGEKLFEELLTAEEGTTSTKHQRIFVAKPN  581
            IRLSG   + D+ IE++GIRPGEKL+EELL  +E       ++I+ +K +
Sbjct  522  IRLSG-KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVD  570

155) GM18_1462 in NC_014973


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  360 bits (1353),  Expect = 1e-100, Method: Compositional matrix adjust.
 Identities = 238/535 (45%), Positives = 378/535 (71%), Gaps = 13/535 (2%)

Query  60   GMYLSIWRYASLQDAYEIFKVVTLSSLISALVLIFM--NGPFGLPRSIYFLDWFLLFSLV  117
             +Y   W YAS+ +   ++K VT S +++ L++ ++  ++PF     +YF+ W + + L+
Sbjct  63   NLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPF---LRLYFITWMMHLLLI  119

Query  118  ASSRLVWRIYRETKVMPSLRKGKKTLIIGAGEAGNLLLKEIRKQAGSTYNVVGFVDDDPE  177
            ++SRL WR+YR   +  ++ K K TL++GAG++G++L++E+ +  +   + V  VDDD +
Sbjct  120  GGSRLFWRVYRRYFIDNAVEK-KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKN  178

Query  178  KTGMRLAG-VRVLGRTDRLCALVRKYNIEEVIFAIPSGGQDLMRQVIANCERAKARFKTL  236
            K  M ++  V+V G  + +  LV+K+ I  +I+AIP+ +Q  + ++   C+     +  +
Sbjct  179  KQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKM  238

Query  237  PGITAIIDGKVSMSQIKDVEIEDLLGRDPVVLDQTAIRNYLTDKRVLVTGAAGSIGSEIC  296
            P I  ++ G + ++++K VE+EDLLGRDPV LD + I   LT+K +LVTGA+GSIGSEIC
Sbjct  239  PNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEIC  298

Query  297  RQVARFNPAKLVLFDHAETPLFYIEKELAAAFPE-LRIIPTVGDVKNQDRVEAVFDEFCP  355
            RQV++F+P K++L++H+E +++ I++EL+ ++ + + ++P ++DV+N+ R+  V +EF P
Sbjct  299  RQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKP  358

Query  356  DVVFHAAAYKHVAMMEYNPAEAVLNNVMGSKVVADAAHKTKVRNFVMVSTDKAVNPTNVM  415
              V+HAAA KHV++MEYNP EA+ NN++G+K VA++A    V +FVM+STDKAVNP+NVM
Sbjct  359  YAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVM  418

Query  416  GATKRSAEIYVQALA-AKSQTKFTTVRFGNVLGSNGSVIPLFKEQIRRGGPVTVTDKDVV  474
            GATKR AE+ +Q+L   +S+T F +VRFGNVLGS GSVIPLFK+QI  GGPVTVT+ ++ 
Sbjct  419  GATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMT  478

Query  475  RYFMTISEASQLVMQAGCIGHGGEIFVLDMGEPVRILSLAEELIRLSGFIPYKEIDIEFV  534
            RYFMTI+EAS+LV+QAG +++GGE+FVLDMG PV+I+ LA +LIRLSG     +I+IEF 
Sbjct  479  RYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIGIEFS  537

Query  535  GLKPGEKLFEELLIDGEGIKPTSHKKI---RVMAPVETDLKKVTNDFEDLFRNAR  586
            G++PGEKL+EELL   E        KI   +V   + T++  + +D+ + F + +
Sbjct  538  GIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSKEK  592

156) GM18_1465 in NC_014973


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  360 bits (1352),  Expect = 1e-100, Method: Compositional matrix adjust.
 Identities = 237/533 (45%), Positives = 372/533 (70%), Gaps = 9/533 (1%)

Query  60   GMYRSIWRYASLQDGYEIFKVVTLSTVGSTLALVYLKGPFALPRSIYFLDWFLLFSMVAT  119
             +Y+  W YAS+ +   ++K VT S V + L +  L +  ++ R +YF+ W + + +++ 
Sbjct  63   NLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLR-LYFITWMMHLLLIGG  121

Query  120  SRLLWRIYRETKVMPSLPKGRKTLIIGAGDAGNLLLKEIRKQAESTYNVIGFVDDDREKW  179
            SRL+WR+YR   +  ++ K + TL++GAG++G++L++E+ +  +   + +  VDDD++K 
Sbjct  122  SRLFWRVYRRYFIDNAVEK-KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQ  180

Query  180  GMRLAG-VRVLGGTERLSALVRKHNVEEVIFAIPSGDRELMRRVIANCERAKARFKTLPG  238
             M ++  V+V G  E ++ LV+K  +  +I+AIP+  +  +  +   C+     +  +P 
Sbjct  181  KMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPN  240

Query  239  ITAIIDGKVSMSQIKDVEIEDLLGRDQVMLDQTAIRNYLTDKRVLVTGAAGSIGSEICRQ  298
            I  ++ G + ++++K VE+EDLLGRD V LD + I   LT+K +LVTGA+GSIGSEICRQ
Sbjct  241  IEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQ  300

Query  299  VAHFKPAKLVLFDHAETPLFYIEKELAAEFPD-LRIIPMVGDVKNKDRVETVFDEFCPDV  357
            V+ F P K++L++H+E +++ I++EL+  + + + ++P+++DV+NK R+  V +EF P  
Sbjct  301  VSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYA  360

Query  358  VFHAAAYKHVAMMEYNPAEAVLNNVMGSKVVADAAHKTKVRNFVMVSTDKAVNPTNVMGA  417
            V+HAAA KHV++MEYNP EA+ NN++G+K VA++A    V +FVM+STDKAVNP+NVMGA
Sbjct  361  VYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGA  420

Query  418  TKRSAEIYVQALAA-KSHTKFTTVRFGNVLGSNGSVIPLFKEQIRKGGPVTVTDKDVVRY  476
            TKR AE+ +Q+L   +S T F +VRFGNVLGS GSVIPLFK+QI  GGPVTVT+ ++ RY
Sbjct  421  TKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRY  480

Query  477  FMTIPEASQLVMQAGCIGHGGEIFVLDMGEPVRILSLAEELIRLSGLIPYKEIDIEFTGL  536
            FMTIPEAS+LV+QAG +++GGE+FVLDMG PV+I+ LA +LIRLSG     +I+IEF+G+
Sbjct  481  FMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKE-EDIGIEFSGI  539

Query  537  KPGEKLFEELLIDGEGIKPTSHNKI---RVVASVETDLKKVSSDFDELFSHAR  586
            +PGEKL+EELL   E       +KI   +V   + T++  +  D+ + FS  +
Sbjct  540  RPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSKEK  592

157) SELR_26940 in NC_017068


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  360 bits (1353),  Expect = 1e-100, Method: Compositional matrix adjust.
 Identities = 240/537 (45%), Positives = 383/537 (72%), Gaps = 5/537 (0%)

Query  61   YFYGMYHRIWHYARMRDLVAIVGAVTLSQTAVFIITTVADIPVP-RSVIILTWLLSICTI  119
            Y + +YHR W+YA + +L++++ AVT S    +++ ++     P   + ++TW++ +  I
Sbjct  60   YVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLI  119

Query  120  GASRLMFKVNLDLVTESKGDKENLLIVGAGDAGAMLVRELEQNANATTNIIGFVDDDEKK  179
            G+SRL  +V      ++  +K   L+VGAG++G++L+RE+ ++ +   + +  VDDD +K
Sbjct  120  GGSRLFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNK  179

Query  180  RKGRLAG-FPVLGNINELPQVVKANNIDEIVIAIPSADGDTIRHIDNLCRKTGSKVRIMP  238
            +K  ++    V G ++++P++VK   I  I+IAIP+     + +I+++C   G  +  MP
Sbjct  180  QKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMP  239

Query  239  GIYEMVSDEMNAGEMreirledllrrdPIHLDFGKITNYIAGKTVLITGAGGSIGSEISR  298
             I +++S+E++  +++ + +EDLL RDP++LD + I+  ++ KT+L+TGAGGSIGSEI R
Sbjct  240  NIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICR  299

Query  299  QISRVGAKEIILLGRGENSIYEIHQELKRKFPEQT-YHTVIANITDRERMARIFKRFQPQ  357
            Q+S+ +++ IILLG+GENSIY IHQEL + + ++  +  VIA++ ++ R+  + + F+P 
Sbjct  300  QVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPY  359

Query  358  VVFHAAAHKHVPLMEIQPEEAIRNNVFGTKNVAELSDQNQAEIFVLISTDKAVNPTSVMG  417
             V+HAAAHKHVPLME +P+EAIRNN++GTKNVAE + + +   FV+ISTDKAVNP++VMG
Sbjct  360  AVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMG  419

Query  418  ATKRAAELVLQEINQ-HSQTKFVTVRFGNVLGSRGSVVPLFERQIANGGPITVTHKDMTR  476
            ATKR AE+V+Q +N+ +S+T FV+VRFGNVLGSRGSV+PLF  QI +GGP+TVTH +MTR
Sbjct  420  ATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTR  479

Query  477  FFMLIPEAVQLVLQAGSQAEGGEVFLFDMGKPVKIKDMAEDLIRLHGLTPDKDIKIVYTG  536
            +FM IPEA +LVLQAG+ A+GGEVF++DMGKPVKI D+A +LIRL G   + DI I ++G
Sbjct  480  YFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIGIEFSG  538

Query  537  LRPGEKLYeelltseegttstKHKKIFKAHIQPLDEADLKQSLQTLQETTDRQIILQ  593
            +RPGEKLYEELL  +E        KI+++ ++    +++   ++ L +   ++ +L+
Sbjct  539  IRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLK  595

158) SP670_0173 in NC_014498


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  360 bits (1351),  Expect = 2e-100, Method: Compositional matrix adjust.
 Identities = 236/434 (55%), Positives = 331/434 (77%), Gaps = 7/434 (1%)

Query  151  EHRRTFLIGAGDGGALFMDSYQHPTSELELVGILDKDSKKKGQKLG---GIPVLGSYDNL  207
            E + T+++GAG+GG++++      + ++ +  +L  D  K+ QK+     + V G  +++
Sbjct  139  EKKATLVVGAGQGGSVLIRE-MLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDI  197

Query  208  PELAKRHQIERVIVAIPSLDPSEYERILQMCNKLGVKCYKMPKVETVVQGLHQAGTGFQK  267
            PEL K+ +I ++I+AIP+L     + I ++CN  GV  +KMP++E V+ G +     ++K
Sbjct  198  PELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSG-ELEVNNLKK  256

Query  268  IDITDLLGRQEIRLDESRLGAELTGKTILVTGAGGSIGSEICRQVSRFNPERIVLLGHGE  327
            +++ DLLGR+ + LD + ++ ELT KTILVTGAGGSIGSEICRQVS+F+P++I+LLGHGE
Sbjct  257  VEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGE  316

Query  328  NSIYLVYHELIRKFQG-IDYVPVIADIQDYDRLLQVFEQYKPAIVYHAAAHKHVPMMERN  386
            NSIY + +EL + +   I++VPVIAD+Q+  R+L+V +++KP  VYHAAAHKHVP+ME N
Sbjct  317  NSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYN  376

Query  387  PKEAFKNNIRGTYNVAKAVDEAKVSKMVMISTDKAVNPPNVMGATKRVAELIVTGFNQ-R  445
            P EA++NNI GT NVA +  E+ VSK VMISTDKAVNP+NVMGATKR+AE+++ ++N+  
Sbjct  377  PHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDN  436

Query  446  SQSTYCAVRFGNVLGSRGSVIPVFERQIAEGGPVTVTDFRMTRYFMTIPEASRLVIHAGA  505
            S++++ AVRFGNVLGSRGSVIP+F  QI  GGPVTVT+  MTRYFMTIPEASRLV++AGA
Sbjct  437  SKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGA  496

Query  506  YAKDGEVFILDMGKPVKIYDLAKKMVLLSGHTESEIPIVEVGIRPGEKLYEELLVSTELV  565
             A++GEVF+LDMGKPVKI DLAK+++ LSG  E +I I   GIRPGEKLYEELL   E+ 
Sbjct  497  LAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIH  556

Query  566  DNQVMDKIFVGKVN  579
             +QV +KI+ GKV+
Sbjct  557  PQQVYEKIYRGKVD  570

159) SPN23F_01140 in NC_011900


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  360 bits (1351),  Expect = 2e-100, Method: Compositional matrix adjust.
 Identities = 236/434 (55%), Positives = 331/434 (77%), Gaps = 7/434 (1%)

Query  151  EHRRTFLIGAGDGGALFMDSYQHPTSELELVGILDKDSKKKGQKLG---GIPVLGSYDNL  207
            E + T+++GAG+GG++++      + ++ +  +L  D  K+ QK+     + V G  +++
Sbjct  139  EKKATLVVGAGQGGSVLIRE-MLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDI  197

Query  208  PELAKRHQIERVIVAIPSLDPSEYERILQMCNKLGVKCYKMPKVETVVQGLHQAGTGFQK  267
            PEL K+ +I ++I+AIP+L     + I ++CN  GV  +KMP++E V+ G +     ++K
Sbjct  198  PELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSG-ELEVNNLKK  256

Query  268  IDITDLLGRQEIRLDESRLGAELTGKTILVTGAGGSIGSEICRQVSRFNPERIVLLGHGE  327
            +++ DLLGR+ + LD + ++ ELT KTILVTGAGGSIGSEICRQVS+F+P++I+LLGHGE
Sbjct  257  VEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGE  316

Query  328  NSIYLVYHELIRKFQG-IDYVPVIADIQDYDRLLQVFEQYKPAIVYHAAAHKHVPMMERN  386
            NSIY + +EL + +   I++VPVIAD+Q+  R+L+V +++KP  VYHAAAHKHVP+ME N
Sbjct  317  NSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYN  376

Query  387  PKEAFKNNIRGTYNVAKAVDEAKVSKMVMISTDKAVNPPNVMGATKRVAELIVTGFNQ-R  445
            P EA++NNI GT NVA +  E+ VSK VMISTDKAVNP+NVMGATKR+AE+++ ++N+  
Sbjct  377  PHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDN  436

Query  446  SQSTYCAVRFGNVLGSRGSVIPVFERQIAEGGPVTVTDFRMTRYFMTIPEASRLVIHAGA  505
            S++++ AVRFGNVLGSRGSVIP+F  QI  GGPVTVT+  MTRYFMTIPEASRLV++AGA
Sbjct  437  SKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGA  496

Query  506  YAKDGEVFILDMGKPVKIYDLAKKMVLLSGHTESEIPIVEVGIRPGEKLYEELLVSTELV  565
             A++GEVF+LDMGKPVKI DLAK+++ LSG  E +I I   GIRPGEKLYEELL   E+ 
Sbjct  497  LAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIH  556

Query  566  DNQVMDKIFVGKVN  579
             +QV +KI+ GKV+
Sbjct  557  PQQVYEKIYRGKVD  570

160) SPCG_0098 in NC_010582


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  360 bits (1351),  Expect = 2e-100, Method: Compositional matrix adjust.
 Identities = 236/434 (55%), Positives = 331/434 (77%), Gaps = 7/434 (1%)

Query  151  EHRRTFLIGAGDGGALFMDSYQHPTSELELVGILDKDSKKKGQKLG---GIPVLGSYDNL  207
            E + T+++GAG+GG++++      + ++ +  +L  D  K+ QK+     + V G  +++
Sbjct  139  EKKATLVVGAGQGGSVLIRE-MLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDI  197

Query  208  PELAKRHQIERVIVAIPSLDPSEYERILQMCNKLGVKCYKMPKVETVVQGLHQAGTGFQK  267
            PEL K+ +I ++I+AIP+L     + I ++CN  GV  +KMP++E V+ G +     ++K
Sbjct  198  PELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSG-ELEVNNLKK  256

Query  268  IDITDLLGRQEIRLDESRLGAELTGKTILVTGAGGSIGSEICRQVSRFNPERIVLLGHGE  327
            +++ DLLGR+ + LD + ++ ELT KTILVTGAGGSIGSEICRQVS+F+P++I+LLGHGE
Sbjct  257  VEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGE  316

Query  328  NSIYLVYHELIRKFQG-IDYVPVIADIQDYDRLLQVFEQYKPAIVYHAAAHKHVPMMERN  386
            NSIY + +EL + +   I++VPVIAD+Q+  R+L+V +++KP  VYHAAAHKHVP+ME N
Sbjct  317  NSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYN  376

Query  387  PKEAFKNNIRGTYNVAKAVDEAKVSKMVMISTDKAVNPPNVMGATKRVAELIVTGFNQ-R  445
            P EA++NNI GT NVA +  E+ VSK VMISTDKAVNP+NVMGATKR+AE+++ ++N+  
Sbjct  377  PHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDN  436

Query  446  SQSTYCAVRFGNVLGSRGSVIPVFERQIAEGGPVTVTDFRMTRYFMTIPEASRLVIHAGA  505
            S++++ AVRFGNVLGSRGSVIP+F  QI  GGPVTVT+  MTRYFMTIPEASRLV++AGA
Sbjct  437  SKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGA  496

Query  506  YAKDGEVFILDMGKPVKIYDLAKKMVLLSGHTESEIPIVEVGIRPGEKLYEELLVSTELV  565
             A++GEVF+LDMGKPVKI DLAK+++ LSG  E +I I   GIRPGEKLYEELL   E+ 
Sbjct  497  LAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIH  556

Query  566  DNQVMDKIFVGKVN  579
             +QV +KI+ GKV+
Sbjct  557  PQQVYEKIYRGKVD  570

161) SPH_0202 in NC_010380


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  360 bits (1351),  Expect = 2e-100, Method: Compositional matrix adjust.
 Identities = 236/434 (55%), Positives = 331/434 (77%), Gaps = 7/434 (1%)

Query  151  EHRRTFLIGAGDGGALFMDSYQHPTSELELVGILDKDSKKKGQKLG---GIPVLGSYDNL  207
            E + T+++GAG+GG++++      + ++ +  +L  D  K+ QK+     + V G  +++
Sbjct  139  EKKATLVVGAGQGGSVLIRE-MLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDI  197

Query  208  PELAKRHQIERVIVAIPSLDPSEYERILQMCNKLGVKCYKMPKVETVVQGLHQAGTGFQK  267
            PEL K+ +I ++I+AIP+L     + I ++CN  GV  +KMP++E V+ G +     ++K
Sbjct  198  PELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSG-ELEVNNLKK  256

Query  268  IDITDLLGRQEIRLDESRLGAELTGKTILVTGAGGSIGSEICRQVSRFNPERIVLLGHGE  327
            +++ DLLGR+ + LD + ++ ELT KTILVTGAGGSIGSEICRQVS+F+P++I+LLGHGE
Sbjct  257  VEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGE  316

Query  328  NSIYLVYHELIRKFQG-IDYVPVIADIQDYDRLLQVFEQYKPAIVYHAAAHKHVPMMERN  386
            NSIY + +EL + +   I++VPVIAD+Q+  R+L+V +++KP  VYHAAAHKHVP+ME N
Sbjct  317  NSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYN  376

Query  387  PKEAFKNNIRGTYNVAKAVDEAKVSKMVMISTDKAVNPPNVMGATKRVAELIVTGFNQ-R  445
            P EA++NNI GT NVA +  E+ VSK VMISTDKAVNP+NVMGATKR+AE+++ ++N+  
Sbjct  377  PHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDN  436

Query  446  SQSTYCAVRFGNVLGSRGSVIPVFERQIAEGGPVTVTDFRMTRYFMTIPEASRLVIHAGA  505
            S++++ AVRFGNVLGSRGSVIP+F  QI  GGPVTVT+  MTRYFMTIPEASRLV++AGA
Sbjct  437  SKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGA  496

Query  506  YAKDGEVFILDMGKPVKIYDLAKKMVLLSGHTESEIPIVEVGIRPGEKLYEELLVSTELV  565
             A++GEVF+LDMGKPVKI DLAK+++ LSG  E +I I   GIRPGEKLYEELL   E+ 
Sbjct  497  LAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIH  556

Query  566  DNQVMDKIFVGKVN  579
             +QV +KI+ GKV+
Sbjct  557  PQQVYEKIYRGKVD  570

162) SPNINV200_00920 in NC_017593


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  360 bits (1351),  Expect = 2e-100, Method: Compositional matrix adjust.
 Identities = 236/434 (55%), Positives = 331/434 (77%), Gaps = 7/434 (1%)

Query  151  EHRRTFLIGAGDGGALFMDSYQHPTSELELVGILDKDSKKKGQKLG---GIPVLGSYDNL  207
            E + T+++GAG+GG++++      + ++ +  +L  D  K+ QK+     + V G  +++
Sbjct  139  EKKATLVVGAGQGGSVLIRE-MLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDI  197

Query  208  PELAKRHQIERVIVAIPSLDPSEYERILQMCNKLGVKCYKMPKVETVVQGLHQAGTGFQK  267
            PEL K+ +I ++I+AIP+L     + I ++CN  GV  +KMP++E V+ G +     ++K
Sbjct  198  PELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSG-ELEVNNLKK  256

Query  268  IDITDLLGRQEIRLDESRLGAELTGKTILVTGAGGSIGSEICRQVSRFNPERIVLLGHGE  327
            +++ DLLGR+ + LD + ++ ELT KTILVTGAGGSIGSEICRQVS+F+P++I+LLGHGE
Sbjct  257  VEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGE  316

Query  328  NSIYLVYHELIRKFQG-IDYVPVIADIQDYDRLLQVFEQYKPAIVYHAAAHKHVPMMERN  386
            NSIY + +EL + +   I++VPVIAD+Q+  R+L+V +++KP  VYHAAAHKHVP+ME N
Sbjct  317  NSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYN  376

Query  387  PKEAFKNNIRGTYNVAKAVDEAKVSKMVMISTDKAVNPPNVMGATKRVAELIVTGFNQ-R  445
            P EA++NNI GT NVA +  E+ VSK VMISTDKAVNP+NVMGATKR+AE+++ ++N+  
Sbjct  377  PHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDN  436

Query  446  SQSTYCAVRFGNVLGSRGSVIPVFERQIAEGGPVTVTDFRMTRYFMTIPEASRLVIHAGA  505
            S++++ AVRFGNVLGSRGSVIP+F  QI  GGPVTVT+  MTRYFMTIPEASRLV++AGA
Sbjct  437  SKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGA  496

Query  506  YAKDGEVFILDMGKPVKIYDLAKKMVLLSGHTESEIPIVEVGIRPGEKLYEELLVSTELV  565
             A++GEVF+LDMGKPVKI DLAK+++ LSG  E +I I   GIRPGEKLYEELL   E+ 
Sbjct  497  LAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIH  556

Query  566  DNQVMDKIFVGKVN  579
             +QV +KI+ GKV+
Sbjct  557  PQQVYEKIYRGKVD  570

163) SPJ_0126 in NC_012466


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  360 bits (1351),  Expect = 2e-100, Method: Compositional matrix adjust.
 Identities = 236/434 (55%), Positives = 331/434 (77%), Gaps = 7/434 (1%)

Query  151  EHRRTFLIGAGDGGALFMDSYQHPTSELELVGILDKDSKKKGQKLG---GIPVLGSYDNL  207
            E + T+++GAG+GG++++      + ++ +  +L  D  K+ QK+     + V G  +++
Sbjct  139  EKKATLVVGAGQGGSVLIRE-MLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDI  197

Query  208  PELAKRHQIERVIVAIPSLDPSEYERILQMCNKLGVKCYKMPKVETVVQGLHQAGTGFQK  267
            PEL K+ +I ++I+AIP+L     + I ++CN  GV  +KMP++E V+ G +     ++K
Sbjct  198  PELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSG-ELEVNNLKK  256

Query  268  IDITDLLGRQEIRLDESRLGAELTGKTILVTGAGGSIGSEICRQVSRFNPERIVLLGHGE  327
            +++ DLLGR+ + LD + ++ ELT KTILVTGAGGSIGSEICRQVS+F+P++I+LLGHGE
Sbjct  257  VEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGE  316

Query  328  NSIYLVYHELIRKFQG-IDYVPVIADIQDYDRLLQVFEQYKPAIVYHAAAHKHVPMMERN  386
            NSIY + +EL + +   I++VPVIAD+Q+  R+L+V +++KP  VYHAAAHKHVP+ME N
Sbjct  317  NSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYN  376

Query  387  PKEAFKNNIRGTYNVAKAVDEAKVSKMVMISTDKAVNPPNVMGATKRVAELIVTGFNQ-R  445
            P EA++NNI GT NVA +  E+ VSK VMISTDKAVNP+NVMGATKR+AE+++ ++N+  
Sbjct  377  PHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDN  436

Query  446  SQSTYCAVRFGNVLGSRGSVIPVFERQIAEGGPVTVTDFRMTRYFMTIPEASRLVIHAGA  505
            S++++ AVRFGNVLGSRGSVIP+F  QI  GGPVTVT+  MTRYFMTIPEASRLV++AGA
Sbjct  437  SKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGA  496

Query  506  YAKDGEVFILDMGKPVKIYDLAKKMVLLSGHTESEIPIVEVGIRPGEKLYEELLVSTELV  565
             A++GEVF+LDMGKPVKI DLAK+++ LSG  E +I I   GIRPGEKLYEELL   E+ 
Sbjct  497  LAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIH  556

Query  566  DNQVMDKIFVGKVN  579
             +QV +KI+ GKV+
Sbjct  557  PQQVYEKIYRGKVD  570

164) SPNOXC_01300 in NC_017592


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  360 bits (1351),  Expect = 2e-100, Method: Compositional matrix adjust.
 Identities = 236/434 (55%), Positives = 331/434 (77%), Gaps = 7/434 (1%)

Query  151  EHRRTFLIGAGDGGALFMDSYQHPTSELELVGILDKDSKKKGQKLG---GIPVLGSYDNL  207
            E + T+++GAG+GG++++      + ++ +  +L  D  K+ QK+     + V G  +++
Sbjct  139  EKKATLVVGAGQGGSVLIRE-MLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDI  197

Query  208  PELAKRHQIERVIVAIPSLDPSEYERILQMCNKLGVKCYKMPKVETVVQGLHQAGTGFQK  267
            PEL K+ +I ++I+AIP+L     + I ++CN  GV  +KMP++E V+ G +     ++K
Sbjct  198  PELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSG-ELEVNNLKK  256

Query  268  IDITDLLGRQEIRLDESRLGAELTGKTILVTGAGGSIGSEICRQVSRFNPERIVLLGHGE  327
            +++ DLLGR+ + LD + ++ ELT KTILVTGAGGSIGSEICRQVS+F+P++I+LLGHGE
Sbjct  257  VEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGE  316

Query  328  NSIYLVYHELIRKFQG-IDYVPVIADIQDYDRLLQVFEQYKPAIVYHAAAHKHVPMMERN  386
            NSIY + +EL + +   I++VPVIAD+Q+  R+L+V +++KP  VYHAAAHKHVP+ME N
Sbjct  317  NSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYN  376

Query  387  PKEAFKNNIRGTYNVAKAVDEAKVSKMVMISTDKAVNPPNVMGATKRVAELIVTGFNQ-R  445
            P EA++NNI GT NVA +  E+ VSK VMISTDKAVNP+NVMGATKR+AE+++ ++N+  
Sbjct  377  PHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDN  436

Query  446  SQSTYCAVRFGNVLGSRGSVIPVFERQIAEGGPVTVTDFRMTRYFMTIPEASRLVIHAGA  505
            S++++ AVRFGNVLGSRGSVIP+F  QI  GGPVTVT+  MTRYFMTIPEASRLV++AGA
Sbjct  437  SKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGA  496

Query  506  YAKDGEVFILDMGKPVKIYDLAKKMVLLSGHTESEIPIVEVGIRPGEKLYEELLVSTELV  565
             A++GEVF+LDMGKPVKI DLAK+++ LSG  E +I I   GIRPGEKLYEELL   E+ 
Sbjct  497  LAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIH  556

Query  566  DNQVMDKIFVGKVN  579
             +QV +KI+ GKV+
Sbjct  557  PQQVYEKIYRGKVD  570

165) SPN034183_01350 in NC_021028


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  360 bits (1351),  Expect = 2e-100, Method: Compositional matrix adjust.
 Identities = 236/434 (55%), Positives = 331/434 (77%), Gaps = 7/434 (1%)

Query  151  EHRRTFLIGAGDGGALFMDSYQHPTSELELVGILDKDSKKKGQKLG---GIPVLGSYDNL  207
            E + T+++GAG+GG++++      + ++ +  +L  D  K+ QK+     + V G  +++
Sbjct  139  EKKATLVVGAGQGGSVLIRE-MLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDI  197

Query  208  PELAKRHQIERVIVAIPSLDPSEYERILQMCNKLGVKCYKMPKVETVVQGLHQAGTGFQK  267
            PEL K+ +I ++I+AIP+L     + I ++CN  GV  +KMP++E V+ G +     ++K
Sbjct  198  PELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSG-ELEVNNLKK  256

Query  268  IDITDLLGRQEIRLDESRLGAELTGKTILVTGAGGSIGSEICRQVSRFNPERIVLLGHGE  327
            +++ DLLGR+ + LD + ++ ELT KTILVTGAGGSIGSEICRQVS+F+P++I+LLGHGE
Sbjct  257  VEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGE  316

Query  328  NSIYLVYHELIRKFQG-IDYVPVIADIQDYDRLLQVFEQYKPAIVYHAAAHKHVPMMERN  386
            NSIY + +EL + +   I++VPVIAD+Q+  R+L+V +++KP  VYHAAAHKHVP+ME N
Sbjct  317  NSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYN  376

Query  387  PKEAFKNNIRGTYNVAKAVDEAKVSKMVMISTDKAVNPPNVMGATKRVAELIVTGFNQ-R  445
            P EA++NNI GT NVA +  E+ VSK VMISTDKAVNP+NVMGATKR+AE+++ ++N+  
Sbjct  377  PHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDN  436

Query  446  SQSTYCAVRFGNVLGSRGSVIPVFERQIAEGGPVTVTDFRMTRYFMTIPEASRLVIHAGA  505
            S++++ AVRFGNVLGSRGSVIP+F  QI  GGPVTVT+  MTRYFMTIPEASRLV++AGA
Sbjct  437  SKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGA  496

Query  506  YAKDGEVFILDMGKPVKIYDLAKKMVLLSGHTESEIPIVEVGIRPGEKLYEELLVSTELV  565
             A++GEVF+LDMGKPVKI DLAK+++ LSG  E +I I   GIRPGEKLYEELL   E+ 
Sbjct  497  LAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIH  556

Query  566  DNQVMDKIFVGKVN  579
             +QV +KI+ GKV+
Sbjct  557  PQQVYEKIYRGKVD  570

166) SPN994038_01350 in NC_021026


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  360 bits (1351),  Expect = 2e-100, Method: Compositional matrix adjust.
 Identities = 236/434 (55%), Positives = 331/434 (77%), Gaps = 7/434 (1%)

Query  151  EHRRTFLIGAGDGGALFMDSYQHPTSELELVGILDKDSKKKGQKLG---GIPVLGSYDNL  207
            E + T+++GAG+GG++++      + ++ +  +L  D  K+ QK+     + V G  +++
Sbjct  139  EKKATLVVGAGQGGSVLIRE-MLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDI  197

Query  208  PELAKRHQIERVIVAIPSLDPSEYERILQMCNKLGVKCYKMPKVETVVQGLHQAGTGFQK  267
            PEL K+ +I ++I+AIP+L     + I ++CN  GV  +KMP++E V+ G +     ++K
Sbjct  198  PELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSG-ELEVNNLKK  256

Query  268  IDITDLLGRQEIRLDESRLGAELTGKTILVTGAGGSIGSEICRQVSRFNPERIVLLGHGE  327
            +++ DLLGR+ + LD + ++ ELT KTILVTGAGGSIGSEICRQVS+F+P++I+LLGHGE
Sbjct  257  VEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGE  316

Query  328  NSIYLVYHELIRKFQG-IDYVPVIADIQDYDRLLQVFEQYKPAIVYHAAAHKHVPMMERN  386
            NSIY + +EL + +   I++VPVIAD+Q+  R+L+V +++KP  VYHAAAHKHVP+ME N
Sbjct  317  NSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYN  376

Query  387  PKEAFKNNIRGTYNVAKAVDEAKVSKMVMISTDKAVNPPNVMGATKRVAELIVTGFNQ-R  445
            P EA++NNI GT NVA +  E+ VSK VMISTDKAVNP+NVMGATKR+AE+++ ++N+  
Sbjct  377  PHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDN  436

Query  446  SQSTYCAVRFGNVLGSRGSVIPVFERQIAEGGPVTVTDFRMTRYFMTIPEASRLVIHAGA  505
            S++++ AVRFGNVLGSRGSVIP+F  QI  GGPVTVT+  MTRYFMTIPEASRLV++AGA
Sbjct  437  SKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGA  496

Query  506  YAKDGEVFILDMGKPVKIYDLAKKMVLLSGHTESEIPIVEVGIRPGEKLYEELLVSTELV  565
             A++GEVF+LDMGKPVKI DLAK+++ LSG  E +I I   GIRPGEKLYEELL   E+ 
Sbjct  497  LAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIH  556

Query  566  DNQVMDKIFVGKVN  579
             +QV +KI+ GKV+
Sbjct  557  PQQVYEKIYRGKVD  570

167) SPN994039_01350 in NC_021005


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  360 bits (1351),  Expect = 2e-100, Method: Compositional matrix adjust.
 Identities = 236/434 (55%), Positives = 331/434 (77%), Gaps = 7/434 (1%)

Query  151  EHRRTFLIGAGDGGALFMDSYQHPTSELELVGILDKDSKKKGQKLG---GIPVLGSYDNL  207
            E + T+++GAG+GG++++      + ++ +  +L  D  K+ QK+     + V G  +++
Sbjct  139  EKKATLVVGAGQGGSVLIRE-MLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDI  197

Query  208  PELAKRHQIERVIVAIPSLDPSEYERILQMCNKLGVKCYKMPKVETVVQGLHQAGTGFQK  267
            PEL K+ +I ++I+AIP+L     + I ++CN  GV  +KMP++E V+ G +     ++K
Sbjct  198  PELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSG-ELEVNNLKK  256

Query  268  IDITDLLGRQEIRLDESRLGAELTGKTILVTGAGGSIGSEICRQVSRFNPERIVLLGHGE  327
            +++ DLLGR+ + LD + ++ ELT KTILVTGAGGSIGSEICRQVS+F+P++I+LLGHGE
Sbjct  257  VEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGE  316

Query  328  NSIYLVYHELIRKFQG-IDYVPVIADIQDYDRLLQVFEQYKPAIVYHAAAHKHVPMMERN  386
            NSIY + +EL + +   I++VPVIAD+Q+  R+L+V +++KP  VYHAAAHKHVP+ME N
Sbjct  317  NSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYN  376

Query  387  PKEAFKNNIRGTYNVAKAVDEAKVSKMVMISTDKAVNPPNVMGATKRVAELIVTGFNQ-R  445
            P EA++NNI GT NVA +  E+ VSK VMISTDKAVNP+NVMGATKR+AE+++ ++N+  
Sbjct  377  PHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDN  436

Query  446  SQSTYCAVRFGNVLGSRGSVIPVFERQIAEGGPVTVTDFRMTRYFMTIPEASRLVIHAGA  505
            S++++ AVRFGNVLGSRGSVIP+F  QI  GGPVTVT+  MTRYFMTIPEASRLV++AGA
Sbjct  437  SKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGA  496

Query  506  YAKDGEVFILDMGKPVKIYDLAKKMVLLSGHTESEIPIVEVGIRPGEKLYEELLVSTELV  565
             A++GEVF+LDMGKPVKI DLAK+++ LSG  E +I I   GIRPGEKLYEELL   E+ 
Sbjct  497  LAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIH  556

Query  566  DNQVMDKIFVGKVN  579
             +QV +KI+ GKV+
Sbjct  557  PQQVYEKIYRGKVD  570

168) SPNA45_01937 in NC_018594


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  360 bits (1351),  Expect = 2e-100, Method: Compositional matrix adjust.
 Identities = 236/434 (55%), Positives = 331/434 (77%), Gaps = 7/434 (1%)

Query  151  EHRRTFLIGAGDGGALFMDSYQHPTSELELVGILDKDSKKKGQKLG---GIPVLGSYDNL  207
            E + T+++GAG+GG++++      + ++ +  +L  D  K+ QK+     + V G  +++
Sbjct  139  EKKATLVVGAGQGGSVLIRE-MLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDI  197

Query  208  PELAKRHQIERVIVAIPSLDPSEYERILQMCNKLGVKCYKMPKVETVVQGLHQAGTGFQK  267
            PEL K+ +I ++I+AIP+L     + I ++CN  GV  +KMP++E V+ G +     ++K
Sbjct  198  PELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSG-ELEVNNLKK  256

Query  268  IDITDLLGRQEIRLDESRLGAELTGKTILVTGAGGSIGSEICRQVSRFNPERIVLLGHGE  327
            +++ DLLGR+ + LD + ++ ELT KTILVTGAGGSIGSEICRQVS+F+P++I+LLGHGE
Sbjct  257  VEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGE  316

Query  328  NSIYLVYHELIRKFQG-IDYVPVIADIQDYDRLLQVFEQYKPAIVYHAAAHKHVPMMERN  386
            NSIY + +EL + +   I++VPVIAD+Q+  R+L+V +++KP  VYHAAAHKHVP+ME N
Sbjct  317  NSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYN  376

Query  387  PKEAFKNNIRGTYNVAKAVDEAKVSKMVMISTDKAVNPPNVMGATKRVAELIVTGFNQ-R  445
            P EA++NNI GT NVA +  E+ VSK VMISTDKAVNP+NVMGATKR+AE+++ ++N+  
Sbjct  377  PHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDN  436

Query  446  SQSTYCAVRFGNVLGSRGSVIPVFERQIAEGGPVTVTDFRMTRYFMTIPEASRLVIHAGA  505
            S++++ AVRFGNVLGSRGSVIP+F  QI  GGPVTVT+  MTRYFMTIPEASRLV++AGA
Sbjct  437  SKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGA  496

Query  506  YAKDGEVFILDMGKPVKIYDLAKKMVLLSGHTESEIPIVEVGIRPGEKLYEELLVSTELV  565
             A++GEVF+LDMGKPVKI DLAK+++ LSG  E +I I   GIRPGEKLYEELL   E+ 
Sbjct  497  LAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIH  556

Query  566  DNQVMDKIFVGKVN  579
             +QV +KI+ GKV+
Sbjct  557  PQQVYEKIYRGKVD  570

169) MYY_0174 in NC_017769


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  360 bits (1351),  Expect = 2e-100, Method: Compositional matrix adjust.
 Identities = 236/434 (55%), Positives = 331/434 (77%), Gaps = 7/434 (1%)

Query  151  EHRRTFLIGAGDGGALFMDSYQHPTSELELVGILDKDSKKKGQKLG---GIPVLGSYDNL  207
            E + T+++GAG+GG++++      + ++ +  +L  D  K+ QK+     + V G  +++
Sbjct  139  EKKATLVVGAGQGGSVLIRE-MLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDI  197

Query  208  PELAKRHQIERVIVAIPSLDPSEYERILQMCNKLGVKCYKMPKVETVVQGLHQAGTGFQK  267
            PEL K+ +I ++I+AIP+L     + I ++CN  GV  +KMP++E V+ G +     ++K
Sbjct  198  PELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSG-ELEVNNLKK  256

Query  268  IDITDLLGRQEIRLDESRLGAELTGKTILVTGAGGSIGSEICRQVSRFNPERIVLLGHGE  327
            +++ DLLGR+ + LD + ++ ELT KTILVTGAGGSIGSEICRQVS+F+P++I+LLGHGE
Sbjct  257  VEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGE  316

Query  328  NSIYLVYHELIRKFQG-IDYVPVIADIQDYDRLLQVFEQYKPAIVYHAAAHKHVPMMERN  386
            NSIY + +EL + +   I++VPVIAD+Q+  R+L+V +++KP  VYHAAAHKHVP+ME N
Sbjct  317  NSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYN  376

Query  387  PKEAFKNNIRGTYNVAKAVDEAKVSKMVMISTDKAVNPPNVMGATKRVAELIVTGFNQ-R  445
            P EA++NNI GT NVA +  E+ VSK VMISTDKAVNP+NVMGATKR+AE+++ ++N+  
Sbjct  377  PHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDN  436

Query  446  SQSTYCAVRFGNVLGSRGSVIPVFERQIAEGGPVTVTDFRMTRYFMTIPEASRLVIHAGA  505
            S++++ AVRFGNVLGSRGSVIP+F  QI  GGPVTVT+  MTRYFMTIPEASRLV++AGA
Sbjct  437  SKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGA  496

Query  506  YAKDGEVFILDMGKPVKIYDLAKKMVLLSGHTESEIPIVEVGIRPGEKLYEELLVSTELV  565
             A++GEVF+LDMGKPVKI DLAK+++ LSG  E +I I   GIRPGEKLYEELL   E+ 
Sbjct  497  LAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIH  556

Query  566  DNQVMDKIFVGKVN  579
             +QV +KI+ GKV+
Sbjct  557  PQQVYEKIYRGKVD  570

170) SPT_0137 in NC_012469


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  360 bits (1351),  Expect = 2e-100, Method: Compositional matrix adjust.
 Identities = 236/434 (55%), Positives = 331/434 (77%), Gaps = 7/434 (1%)

Query  151  EHRRTFLIGAGDGGALFMDSYQHPTSELELVGILDKDSKKKGQKLG---GIPVLGSYDNL  207
            E + T+++GAG+GG++++      + ++ +  +L  D  K+ QK+     + V G  +++
Sbjct  139  EKKATLVVGAGQGGSVLIRE-MLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDI  197

Query  208  PELAKRHQIERVIVAIPSLDPSEYERILQMCNKLGVKCYKMPKVETVVQGLHQAGTGFQK  267
            PEL K+ +I ++I+AIP+L     + I ++CN  GV  +KMP++E V+ G +     ++K
Sbjct  198  PELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSG-ELEVNNLKK  256

Query  268  IDITDLLGRQEIRLDESRLGAELTGKTILVTGAGGSIGSEICRQVSRFNPERIVLLGHGE  327
            +++ DLLGR+ + LD + ++ ELT KTILVTGAGGSIGSEICRQVS+F+P++I+LLGHGE
Sbjct  257  VEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGE  316

Query  328  NSIYLVYHELIRKFQG-IDYVPVIADIQDYDRLLQVFEQYKPAIVYHAAAHKHVPMMERN  386
            NSIY + +EL + +   I++VPVIAD+Q+  R+L+V +++KP  VYHAAAHKHVP+ME N
Sbjct  317  NSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYN  376

Query  387  PKEAFKNNIRGTYNVAKAVDEAKVSKMVMISTDKAVNPPNVMGATKRVAELIVTGFNQ-R  445
            P EA++NNI GT NVA +  E+ VSK VMISTDKAVNP+NVMGATKR+AE+++ ++N+  
Sbjct  377  PHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDN  436

Query  446  SQSTYCAVRFGNVLGSRGSVIPVFERQIAEGGPVTVTDFRMTRYFMTIPEASRLVIHAGA  505
            S++++ AVRFGNVLGSRGSVIP+F  QI  GGPVTVT+  MTRYFMTIPEASRLV++AGA
Sbjct  437  SKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGA  496

Query  506  YAKDGEVFILDMGKPVKIYDLAKKMVLLSGHTESEIPIVEVGIRPGEKLYEELLVSTELV  565
             A++GEVF+LDMGKPVKI DLAK+++ LSG  E +I I   GIRPGEKLYEELL   E+ 
Sbjct  497  LAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIH  556

Query  566  DNQVMDKIFVGKVN  579
             +QV +KI+ GKV+
Sbjct  557  PQQVYEKIYRGKVD  570

171) HMPREF0837_10392 in NC_014251


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  360 bits (1351),  Expect = 2e-100, Method: Compositional matrix adjust.
 Identities = 236/434 (55%), Positives = 331/434 (77%), Gaps = 7/434 (1%)

Query  151  EHRRTFLIGAGDGGALFMDSYQHPTSELELVGILDKDSKKKGQKLG---GIPVLGSYDNL  207
            E + T+++GAG+GG++++      + ++ +  +L  D  K+ QK+     + V G  +++
Sbjct  139  EKKATLVVGAGQGGSVLIRE-MLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDI  197

Query  208  PELAKRHQIERVIVAIPSLDPSEYERILQMCNKLGVKCYKMPKVETVVQGLHQAGTGFQK  267
            PEL K+ +I ++I+AIP+L     + I ++CN  GV  +KMP++E V+ G +     ++K
Sbjct  198  PELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSG-ELEVNNLKK  256

Query  268  IDITDLLGRQEIRLDESRLGAELTGKTILVTGAGGSIGSEICRQVSRFNPERIVLLGHGE  327
            +++ DLLGR+ + LD + ++ ELT KTILVTGAGGSIGSEICRQVS+F+P++I+LLGHGE
Sbjct  257  VEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGE  316

Query  328  NSIYLVYHELIRKFQG-IDYVPVIADIQDYDRLLQVFEQYKPAIVYHAAAHKHVPMMERN  386
            NSIY + +EL + +   I++VPVIAD+Q+  R+L+V +++KP  VYHAAAHKHVP+ME N
Sbjct  317  NSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYN  376

Query  387  PKEAFKNNIRGTYNVAKAVDEAKVSKMVMISTDKAVNPPNVMGATKRVAELIVTGFNQ-R  445
            P EA++NNI GT NVA +  E+ VSK VMISTDKAVNP+NVMGATKR+AE+++ ++N+  
Sbjct  377  PHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDN  436

Query  446  SQSTYCAVRFGNVLGSRGSVIPVFERQIAEGGPVTVTDFRMTRYFMTIPEASRLVIHAGA  505
            S++++ AVRFGNVLGSRGSVIP+F  QI  GGPVTVT+  MTRYFMTIPEASRLV++AGA
Sbjct  437  SKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGA  496

Query  506  YAKDGEVFILDMGKPVKIYDLAKKMVLLSGHTESEIPIVEVGIRPGEKLYEELLVSTELV  565
             A++GEVF+LDMGKPVKI DLAK+++ LSG  E +I I   GIRPGEKLYEELL   E+ 
Sbjct  497  LAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIH  556

Query  566  DNQVMDKIFVGKVN  579
             +QV +KI+ GKV+
Sbjct  557  PQQVYEKIYRGKVD  570

172) SP_0103 in NC_003028


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  360 bits (1351),  Expect = 2e-100, Method: Compositional matrix adjust.
 Identities = 236/434 (55%), Positives = 331/434 (77%), Gaps = 7/434 (1%)

Query  151  EHRRTFLIGAGDGGALFMDSYQHPTSELELVGILDKDSKKKGQKLG---GIPVLGSYDNL  207
            E + T+++GAG+GG++++      + ++ +  +L  D  K+ QK+     + V G  +++
Sbjct  139  EKKATLVVGAGQGGSVLIRE-MLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDI  197

Query  208  PELAKRHQIERVIVAIPSLDPSEYERILQMCNKLGVKCYKMPKVETVVQGLHQAGTGFQK  267
            PEL K+ +I ++I+AIP+L     + I ++CN  GV  +KMP++E V+ G +     ++K
Sbjct  198  PELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSG-ELEVNNLKK  256

Query  268  IDITDLLGRQEIRLDESRLGAELTGKTILVTGAGGSIGSEICRQVSRFNPERIVLLGHGE  327
            +++ DLLGR+ + LD + ++ ELT KTILVTGAGGSIGSEICRQVS+F+P++I+LLGHGE
Sbjct  257  VEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGE  316

Query  328  NSIYLVYHELIRKFQG-IDYVPVIADIQDYDRLLQVFEQYKPAIVYHAAAHKHVPMMERN  386
            NSIY + +EL + +   I++VPVIAD+Q+  R+L+V +++KP  VYHAAAHKHVP+ME N
Sbjct  317  NSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYN  376

Query  387  PKEAFKNNIRGTYNVAKAVDEAKVSKMVMISTDKAVNPPNVMGATKRVAELIVTGFNQ-R  445
            P EA++NNI GT NVA +  E+ VSK VMISTDKAVNP+NVMGATKR+AE+++ ++N+  
Sbjct  377  PHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDN  436

Query  446  SQSTYCAVRFGNVLGSRGSVIPVFERQIAEGGPVTVTDFRMTRYFMTIPEASRLVIHAGA  505
            S++++ AVRFGNVLGSRGSVIP+F  QI  GGPVTVT+  MTRYFMTIPEASRLV++AGA
Sbjct  437  SKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGA  496

Query  506  YAKDGEVFILDMGKPVKIYDLAKKMVLLSGHTESEIPIVEVGIRPGEKLYEELLVSTELV  565
             A++GEVF+LDMGKPVKI DLAK+++ LSG  E +I I   GIRPGEKLYEELL   E+ 
Sbjct  497  LAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIH  556

Query  566  DNQVMDKIFVGKVN  579
             +QV +KI+ GKV+
Sbjct  557  PQQVYEKIYRGKVD  570

173) SPAP_0145 in NC_014494


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  359 bits (1349),  Expect = 2e-100, Method: Compositional matrix adjust.
 Identities = 235/434 (55%), Positives = 331/434 (77%), Gaps = 7/434 (1%)

Query  151  EHRRTFLIGAGDGGALFMDSYQHPTSELELVGILDKDSKKKGQKLG---GIPVLGSYDNL  207
            E + T+++GAG+GG++++      + ++ +  +L  D  K+ QK+     + V G  +++
Sbjct  139  EKKATLVVGAGQGGSVLIRE-MLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDI  197

Query  208  PELAKRHQIERVIVAIPSLDPSEYERILQMCNKLGVKCYKMPKVETVVQGLHQAGTGFQK  267
            PEL K+ +I ++I+AIP+L     + I ++CN  GV  +KMP++E V+ G +     ++K
Sbjct  198  PELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSG-ELEVNNLKK  256

Query  268  IDITDLLGRQEIRLDESRLGAELTGKTILVTGAGGSIGSEICRQVSRFNPERIVLLGHGE  327
            +++ DLLGR+ + LD + ++ ELT KTILVTGAGGSIGSEICRQVS+F+P++I+LLGHGE
Sbjct  257  VEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGE  316

Query  328  NSIYLVYHELIRKFQG-IDYVPVIADIQDYDRLLQVFEQYKPAIVYHAAAHKHVPMMERN  386
            NSIY + +EL + +   I++VPVIAD+Q+  R+L+V +++KP  VYHAAAHKHVP+ME N
Sbjct  317  NSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYN  376

Query  387  PKEAFKNNIRGTYNVARAVDEAKVPKMVMISTDKAVNPPNVMGATKRVAELIVTGFNQ-R  445
            P EA++NNI GT NVA +  E+ V+K VMISTDKAVNP+NVMGATKR+AE+++ ++N+  
Sbjct  377  PHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDN  436

Query  446  SQSTYCAVRFGNVLGSRGSVIPVFERQIAEGGPVTVTDFRMTRYFMTIPEASRLVIHAGA  505
            S++++ AVRFGNVLGSRGSVIP+F  QI  GGPVTVT+  MTRYFMTIPEASRLV++AGA
Sbjct  437  SKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGA  496

Query  506  YAKDGEVFILDMGKPVKIYDLAKKMVLLSGHTESEIPIVEVGIRPGEKLYEELLVSTELV  565
             A++GEVF+LDMGKPVKI DLAK+++ LSG  E +I I   GIRPGEKLYEELL   E+ 
Sbjct  497  LAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIH  556

Query  566  DNQVMDKIFVGKVN  579
             +QV +KI+ GKV+
Sbjct  557  PQQVYEKIYRGKVD  570

174) SPG_0100 in NC_011072


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  359 bits (1349),  Expect = 2e-100, Method: Compositional matrix adjust.
 Identities = 235/434 (55%), Positives = 331/434 (77%), Gaps = 7/434 (1%)

Query  151  EHRRTFLIGAGDGGALFMDSYQHPTSELELVGILDKDSKKKGQKLG---GIPVLGSYDNL  207
            E + T+++GAG+GG++++      + ++ +  +L  D  K+ QK+     + V G  +++
Sbjct  139  EKKATLVVGAGQGGSVLIRE-MLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDI  197

Query  208  PELAKRHQIERVIVAIPSLDPSEYERILQMCNKLGVKCYKMPKVETVVQGLHQAGTGFQK  267
            PEL K+ +I ++I+AIP+L     + I ++CN  GV  +KMP++E V+ G +     ++K
Sbjct  198  PELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSG-ELEVNNLKK  256

Query  268  IDITDLLGRQEIRLDESRLGAELTGKTILVTGAGGSIGSEICRQVSRFNPERIVLLGHGE  327
            +++ DLLGR+ + LD + ++ ELT KTILVTGAGGSIGSEICRQVS+F+P++I+LLGHGE
Sbjct  257  VEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGE  316

Query  328  NSIYLVYHELIRKFQG-IDYVPVIADIQDYDRLLQVFEQYKPAIVYHAAAHKHVPMMERN  386
            NSIY + +EL + +   I++VPVIAD+Q+  R+L+V +++KP  VYHAAAHKHVP+ME N
Sbjct  317  NSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYN  376

Query  387  PKEAFKNNIRGTYNVARAVDEAKVPKMVMISTDKAVNPPNVMGATKRVAELIVTGFNQ-R  445
            P EA++NNI GT NVA +  E+ V+K VMISTDKAVNP+NVMGATKR+AE+++ ++N+  
Sbjct  377  PHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDN  436

Query  446  SQSTYCAVRFGNVLGSRGSVIPVFERQIAEGGPVTVTDFRMTRYFMTIPEASRLVIHAGA  505
            S++++ AVRFGNVLGSRGSVIP+F  QI  GGPVTVT+  MTRYFMTIPEASRLV++AGA
Sbjct  437  SKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGA  496

Query  506  YAKDGEVFILDMGKPVKIYDLAKKMVLLSGHTESEIPIVEVGIRPGEKLYEELLVSTELV  565
             A++GEVF+LDMGKPVKI DLAK+++ LSG  E +I I   GIRPGEKLYEELL   E+ 
Sbjct  497  LAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIH  556

Query  566  DNQVMDKIFVGKVN  579
             +QV +KI+ GKV+
Sbjct  557  PQQVYEKIYRGKVD  570

175) HMPREF1038_00163 in NC_018630


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  359 bits (1348),  Expect = 2e-100, Method: Compositional matrix adjust.
 Identities = 235/434 (55%), Positives = 331/434 (77%), Gaps = 7/434 (1%)

Query  151  EHRRTFLIGAGDGGALFMDSYQHPTSELELVGILDKDSKKKGQKLG---GIPVLGSYDNL  207
            E + T+++GAG+GG++++      + ++ +  +L  D  K+ QK+     + V G  +++
Sbjct  139  EKKATLVVGAGQGGSVLIRE-MLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDI  197

Query  208  PELAKRHQIERVIVAIPSLDPSEYERILQMCNKLGVKCYKMPKVETVVQGLHQAGTGFQK  267
            PEL K+ +I ++I+AIP+L     + I ++CN  GV  +KMP++E V+ G +     ++K
Sbjct  198  PELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSG-ELEVNNLKK  256

Query  268  IDITDLLGRQEIRLDESRLGAELTGKTILVTGAGGSIGSEICRQVSRFNPERIVLLGHGE  327
            +++ DLLGR+ + LD + ++ ELT KTILVTGAGGSIGSEICRQVS+F+P++I+LLGHGE
Sbjct  257  VEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGE  316

Query  328  NSIYLVYHELIRKFQG-IDYVPVIADIQDYDRLLQVFEQYKPAIVYHAAAHKHVPMMERN  386
            NSIY + +EL + +   I++VPVIAD+Q+  R+L+V +++KP  VYHAAAHKHVP+ME N
Sbjct  317  NSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYN  376

Query  387  PKEAFKNNIRGTYNVARAVDEAKVPKMVMISTDKAVNPPNVMGATKRVAELIVTGFNQ-R  445
            P EA++NNI GT NVA +  E+ V+K VMISTDKAVNP+NVMGATKR+AE+++ ++N+  
Sbjct  377  PHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDN  436

Query  446  SQSTYCAVRFGNVLGSRGSVIPVFERQIAEGGPVTVTDFRMTRYFMTIPEASRLVIHAGA  505
            S++++ AVRFGNVLGSRGSVIP+F  QI  GGPVTVT+  MTRYFMTIPEASRLV++AGA
Sbjct  437  SKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGA  496

Query  506  YAKDGEVFILDMGKPVKIYDLAKKMVLLSGHTESEIPIVEVGIRPGEKLYEELLVSTELV  565
             A++GEVF+LDMGKPVKI DLAK+++ LSG  E +I I   GIRPGEKLYEELL   E+ 
Sbjct  497  LAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIH  556

Query  566  DNQVMDKIFVGKVN  579
             +QV +KI+ GKV+
Sbjct  557  PQQVYEKIYRGKVD  570

176) INV104_00820 in NC_017591


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  359 bits (1348),  Expect = 2e-100, Method: Compositional matrix adjust.
 Identities = 235/434 (55%), Positives = 331/434 (77%), Gaps = 7/434 (1%)

Query  151  EHRRTFLIGAGDGGALFMDSYQHPTSELELVGILDKDSKKKGQKLG---GIPVLGSYDNL  207
            E + T+++GAG+GG++++      + ++ +  +L  D  K+ QK+     + V G  +++
Sbjct  139  EKKATLVVGAGQGGSVLIRE-MLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDI  197

Query  208  PELAKRHQIERVIVAIPSLDPSEYERILQMCNKLGVKCYKMPKVETVVQGLHQAGTGFQK  267
            PEL K+ +I ++I+AIP+L     + I ++CN  GV  +KMP++E V+ G +     ++K
Sbjct  198  PELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSG-ELEVNNLKK  256

Query  268  IDITDLLGRQEIRLDESRLGAELTGKTILVTGAGGSIGSEICRQVSRFNPERIVLLGHGE  327
            +++ DLLGR+ + LD + ++ ELT KTILVTGAGGSIGSEICRQVS+F+P++I+LLGHGE
Sbjct  257  VEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGE  316

Query  328  NSIYLVYHELIRKFQG-IDYVPVIADIQDYDRLLQVFEQYKPAIVYHAAAHKHVPMMERN  386
            NSIY + +EL + +   I++VPVIAD+Q+  R+L+V +++KP  VYHAAAHKHVP+ME N
Sbjct  317  NSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYN  376

Query  387  PKEAFKNNIRGTYNVARAVDEAKVPKMVMISTDKAVNPPNVMGATKRVAELIVTGFNQ-R  445
            P EA++NNI GT NVA +  E+ V+K VMISTDKAVNP+NVMGATKR+AE+++ ++N+  
Sbjct  377  PHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDN  436

Query  446  SQSTYCAVRFGNVLGSRGSVIPVFERQIAEGGPVTVTDFRMTRYFMTIPEASRLVIHAGA  505
            S++++ AVRFGNVLGSRGSVIP+F  QI  GGPVTVT+  MTRYFMTIPEASRLV++AGA
Sbjct  437  SKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGA  496

Query  506  YAKDGEVFILDMGKPVKIYDLAKKMVLLSGHTESEIPIVEVGIRPGEKLYEELLVSTELV  565
             A++GEVF+LDMGKPVKI DLAK+++ LSG  E +I I   GIRPGEKLYEELL   E+ 
Sbjct  497  LAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIH  556

Query  566  DNQVMDKIFVGKVN  579
             +QV +KI+ GKV+
Sbjct  557  PQQVYEKIYRGKVD  570

177) SPP_0162 in NC_012467


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  359 bits (1348),  Expect = 2e-100, Method: Compositional matrix adjust.
 Identities = 235/434 (55%), Positives = 331/434 (77%), Gaps = 7/434 (1%)

Query  151  EHRRTFLIGAGDGGALFMDSYQHPTSELELVGILDKDSKKKGQKLG---GIPVLGSYDNL  207
            E + T+++GAG+GG++++      + ++ +  +L  D  K+ QK+     + V G  +++
Sbjct  139  EKKATLVVGAGQGGSVLIRE-MLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDI  197

Query  208  PELAKRHQIERVIVAIPSLDPSEYERILQMCNKLGVKCYKMPKVETVVQGLHQAGTGFQK  267
            PEL K+ +I ++I+AIP+L     + I ++CN  GV  +KMP++E V+ G +     ++K
Sbjct  198  PELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSG-ELEVNNLKK  256

Query  268  IDITDLLGRQEIRLDESRLGAELTGKTILVTGAGGSIGSEICRQVSRFNPERIVLLGHGE  327
            +++ DLLGR+ + LD + ++ ELT KTILVTGAGGSIGSEICRQVS+F+P++I+LLGHGE
Sbjct  257  VEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGE  316

Query  328  NSIYLVYHELIRKFQG-IDYVPVIADIQDYDRLLQVFEQYKPAIVYHAAAHKHVPMMERN  386
            NSIY + +EL + +   I++VPVIAD+Q+  R+L+V +++KP  VYHAAAHKHVP+ME N
Sbjct  317  NSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYN  376

Query  387  PKEAFKNNIRGTYNVARAVDEAKVPKMVMISTDKAVNPPNVMGATKRVAELIVTGFNQ-R  445
            P EA++NNI GT NVA +  E+ V+K VMISTDKAVNP+NVMGATKR+AE+++ ++N+  
Sbjct  377  PHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDN  436

Query  446  SQSTYCAVRFGNVLGSRGSVIPVFERQIAEGGPVTVTDFRMTRYFMTIPEASRLVIHAGA  505
            S++++ AVRFGNVLGSRGSVIP+F  QI  GGPVTVT+  MTRYFMTIPEASRLV++AGA
Sbjct  437  SKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGA  496

Query  506  YAKDGEVFILDMGKPVKIYDLAKKMVLLSGHTESEIPIVEVGIRPGEKLYEELLVSTELV  565
             A++GEVF+LDMGKPVKI DLAK+++ LSG  E +I I   GIRPGEKLYEELL   E+ 
Sbjct  497  LAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIH  556

Query  566  DNQVMDKIFVGKVN  579
             +QV +KI+ GKV+
Sbjct  557  PQQVYEKIYRGKVD  570

178) SPN034156_11970 in NC_021006


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  359 bits (1350),  Expect = 2e-100, Method: Compositional matrix adjust.
 Identities = 235/434 (55%), Positives = 331/434 (77%), Gaps = 7/434 (1%)

Query  151  EHRRTFLIGAGDGGALFMDSYQHPTSELELVGILDKDSKKKGQKLG---GIPVLGSYDNL  207
            E + T+++GAG+GG++++      + ++ +  +L  D  K+ QK+     + V G  +++
Sbjct  139  EKKATLVVGAGQGGSVLIRE-MLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDI  197

Query  208  PELAKRHQIERVIVAIPSLDPSEYERILQMCNKLGVKCYKMPKVETVVQGLHQAGTGFQK  267
            PEL K+ +I ++I+AIP+L     + I ++CN  GV  +KMP++E V+ G +     ++K
Sbjct  198  PELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSG-ELEVNNLKK  256

Query  268  IDITDLLGRQEIRLDESRLGAELTGKTILVTGAGGSIGSEICRQVSRFNPERIVLLGHGE  327
            +++ DLLGR+ + LD + ++ ELT KTILVTGAGGSIGSEICRQVS+F+P++I+LLGHGE
Sbjct  257  VEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGE  316

Query  328  NSIYLVYHELIRKFQG-IDYVPVIADIQDYDRLLQVFEQYKPAIVYHAAAHKHVPMMERN  386
            NSIY + +EL + +   I++VPVIAD+Q+  R+L+V +++KP  VYHAAAHKHVP+ME N
Sbjct  317  NSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYN  376

Query  387  PKEAFKNNIRGTYNVARAVDEAKVPKMVMISTDKAVNPPNVMGATKRVAELIVTGFNQ-R  445
            P EA++NNI GT NVA +  E+ V+K VMISTDKAVNP+NVMGATKR+AE+++ ++N+  
Sbjct  377  PHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDN  436

Query  446  SQSTYCAVRFGNVLGSRGSVIPVFERQIAEGGPVTVTDFRMTRYFMTIPEASRLVIHAGA  505
            S++++ AVRFGNVLGSRGSVIP+F  QI  GGPVTVT+  MTRYFMTIPEASRLV++AGA
Sbjct  437  SKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGA  496

Query  506  YAKDGEVFILDMGKPVKIYDLAKKMVLLSGHTESEIPIVEVGIRPGEKLYEELLVSTELV  565
             A++GEVF+LDMGKPVKI DLAK+++ LSG  E +I I   GIRPGEKLYEELL   E+ 
Sbjct  497  LAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIH  556

Query  566  DNQVMDKIFVGKVN  579
             +QV +KI+ GKV+
Sbjct  557  PQQVYEKIYRGKVD  570

179) capD in NC_019954


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  359 bits (1348),  Expect = 3e-100, Method: Compositional matrix adjust.
 Identities = 252/530 (48%), Positives = 382/530 (73%), Gaps = 18/530 (3%)

Query  67   VFNLYNRIWKYASISELISIV--VATSFSTLTFLGYTFMVRKTFPRSIYILFWLLLTTFV  124
            VFNLY+R W YAS+SEL+S++  V++S+    +L   ++    F R +Y++ W++   ++
Sbjct  61   VFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLR-LYFITWMMHLLLI  119

Query  125  GGSRFILRTFNG--VTPTFRKTEGVRNAMVIGAGEAGSMVIQEFKKHPDLRMKPVAIIDD  182
            GGSR++ R +    +  +  K    + ++V+GAG++GS++I+E  +  D+RM+PV  +DD
Sbjct  120  GGSRLFWRVYRRYFIDNAVEK----KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDD  175

Query  183  DTNKHGMSIHG-VKVLGARQVIPETVLRKNIKEIIIAMPSIDRHQIRDIVDICSKTKCKL  241
            D NK+ M+I   VKV G  + IPE V +  IK IIIA+P++ + ++ +I  IC+     L
Sbjct  176  DKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVEL  235

Query  242  RIVPGVYELLDGKVSIKRLRDVRIEDLLGREPVKLNLDEISGYIENKVVLVTGGGGSIGS  301
              +P + ++L G + ++ L+ V +EDLLGR+PV L++  IS  + NK +LVTG+GGSIGS
Sbjct  236  FKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGS  295

Query  302  ELCRQIARFKPKELLIFDISENNVYSLEYDLKTLFPD-LCYTPLIGSVRDKGRLEYVFKK  360
            E+CRQ+++F P+ +++++ +EN++YS++ +L   + + + + P+I+ V++K R+  V + 
Sbjct  296  EICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNE  355

Query  361  YGPDVVFHAAAHKHVPMMELNATEAIKNNVFGTLNVAEAADKYGAERFTLISTDKAVNPT  420
            + P  V+HAAAHKHVP+ME N+ EAI+NN++GT NVAE+A      +F +ISTDKAVNP+
Sbjct  356  FKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPS  415

Query  421  NIMGASKRIAEIVVQMMSMKSS-TVFSAVRFGNVLGSEGSVIPLFRKQIENGGPVTVTHP  479
            N+MGA+KRIAE+V+Q ++  +S T F AVRFGNVLGS GSVIPLF++QIE+GGPVTVTHP
Sbjct  416  NVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHP  475

Query  480  EVIRYFMTIPEAVQLVIQAGALAKGGEIFILDMGEPVKIADLARDMIKLSGLEPGVDIDI  539
            E+ RYFMTIPEA +LV+QAGALA+GGE+F+LDMG PVKI DLA+++I+LSG     DI+I
Sbjct  476  EMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIGI  534

Query  540  EYIGLRPGeklfeelllneeGITATKYKKIYIAKPTFSNVDAFEKEILNL  589
            E+ G+RPGEKL+EELL ++E      Y KIY +K     VD + K  ++L
Sbjct  535  EFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGK-----VDHYIKTEVDL  579

180) TepRe1_1757 in NC_015519


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  359 bits (1348),  Expect = 3e-100, Method: Compositional matrix adjust.
 Identities = 252/530 (48%), Positives = 382/530 (73%), Gaps = 18/530 (3%)

Query  67   VFNLYNRIWKYASISELISIV--VATSFSTLTFLGYTFMVRKTFPRSIYILFWLLLTTFV  124
            VFNLY+R W YAS+SEL+S++  V++S+    +L   ++    F R +Y++ W++   ++
Sbjct  61   VFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLR-LYFITWMMHLLLI  119

Query  125  GGSRFILRTFNG--VTPTFRKTEGVRNAMVIGAGEAGSMVIQEFKKHPDLRMKPVAIIDD  182
            GGSR++ R +    +  +  K    + ++V+GAG++GS++I+E  +  D+RM+PV  +DD
Sbjct  120  GGSRLFWRVYRRYFIDNAVEK----KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDD  175

Query  183  DTNKHGMSIHG-VKVLGARQVIPETVLRKNIKEIIIAMPSIDRHQIRDIVDICSKTKCKL  241
            D NK+ M+I   VKV G  + IPE V +  IK IIIA+P++ + ++ +I  IC+     L
Sbjct  176  DKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVEL  235

Query  242  RIVPGVYELLDGKVSIKRLRDVRIEDLLGREPVKLNLDEISGYIENKVVLVTGGGGSIGS  301
              +P + ++L G + ++ L+ V +EDLLGR+PV L++  IS  + NK +LVTG+GGSIGS
Sbjct  236  FKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGS  295

Query  302  ELCRQIARFKPKELLIFDISENNVYSLEYDLKTLFPD-LCYTPLIGSVRDKGRLEYVFKK  360
            E+CRQ+++F P+ +++++ +EN++YS++ +L   + + + + P+I+ V++K R+  V + 
Sbjct  296  EICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNE  355

Query  361  YGPDVVFHAAAHKHVPMMELNATEAIKNNVFGTLNVAEAADKYGAERFTLISTDKAVNPT  420
            + P  V+HAAAHKHVP+ME N+ EAI+NN++GT NVAE+A      +F +ISTDKAVNP+
Sbjct  356  FKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPS  415

Query  421  NIMGASKRIAEIVVQMMSMKSS-TVFSAVRFGNVLGSEGSVIPLFRKQIENGGPVTVTHP  479
            N+MGA+KRIAE+V+Q ++  +S T F AVRFGNVLGS GSVIPLF++QIE+GGPVTVTHP
Sbjct  416  NVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHP  475

Query  480  EVIRYFMTIPEAVQLVIQAGALAKGGEIFILDMGEPVKIADLARDMIKLSGLEPGVDIDI  539
            E+ RYFMTIPEA +LV+QAGALA+GGE+F+LDMG PVKI DLA+++I+LSG     DI+I
Sbjct  476  EMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIGI  534

Query  540  EYIGLRPGeklfeelllneeGITATKYKKIYIAKPTFSNVDAFEKEILNL  589
            E+ G+RPGEKL+EELL ++E      Y KIY +K     VD + K  ++L
Sbjct  535  EFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGK-----VDHYIKTEVDL  579

181) smi_1982 in NC_013853


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  358 bits (1345),  Expect = 4e-100, Method: Compositional matrix adjust.
 Identities = 235/434 (55%), Positives = 331/434 (77%), Gaps = 7/434 (1%)

Query  151  EHRRTFLIGAGDGGALFMDSYQHPTSDLELVGILDKDAKKKGQKLG---GIPVLGSYDNL  207
            E + T+++GAG+GG++++      + D+ +  +L  D  K+ QK+     + V G  +++
Sbjct  139  EKKATLVVGAGQGGSVLIRE-MLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDI  197

Query  208  PELAKRHQIERVIVAIPSLDPSEYERILQMCNKLGVKCYKMPKVETVVQGLHQAATGFQK  267
            PEL K+ +I ++I+AIP+L     + I ++CN  GV  +KMP++E V+ G +     ++K
Sbjct  198  PELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSG-ELEVNNLKK  256

Query  268  IDITDLLGRQEIRLDESRLGAELTGKTILVTGAGGSIGSEICRQVSRFNPERIVLLGHGE  327
            +++ DLLGR+ + LD + ++ ELT KTILVTGAGGSIGSEICRQVS+F+P++I+LLGHGE
Sbjct  257  VEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGE  316

Query  328  NSIYLVYHELIRKFQG-IDYVPVIADIQDYDRLLQVFEQYKPAIVYHAAAHKHVPMMERN  386
            NSIY + +EL + +   I++VPVIAD+Q+  R+L+V +++KP  VYHAAAHKHVP+ME N
Sbjct  317  NSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYN  376

Query  387  PKEAFKNNIRGTYNVARAVDEAKVPKMVMISTDKAVNPPNVMGATKRVAELIVTGFNQ-R  445
            P EA++NNI GT NVA +  E+ V+K VMISTDKAVNP+NVMGATKR+AE+++ ++N+  
Sbjct  377  PHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDN  436

Query  446  SQSTYCAVRFGNVLGSRGSVIPVFERQIAEGGPVTVTDFRMTRYFMTIPEASRLVIHAGA  505
            S++++ AVRFGNVLGSRGSVIP+F  QI  GGPVTVT+  MTRYFMTIPEASRLV++AGA
Sbjct  437  SKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGA  496

Query  506  YAKDGEVFILDMGKPVKIYDLAKKMVLLSGHTESEIPIIEVGIRAGEKLYEELLVSTELV  565
             A++GEVF+LDMGKPVKI DLAK+++ LSG  E +I I   GIR+GEKLYEELL   E+ 
Sbjct  497  LAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIH  556

Query  566  DNQVMDKIFVGKVN  579
             +QV +KI+ GKV+
Sbjct  557  PQQVYEKIYRGKVD  570

182) Glov_1513 in NC_010814


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  358 bits (1343),  Expect = 7e-100, Method: Compositional matrix adjust.
 Identities = 236/510 (47%), Positives = 357/510 (70%), Gaps = 11/510 (2%)

Query  61   LYSNIWRYASLQDVLEIFKAVTLAVIMTAFGLLFVRDTLVFYRTLLILDWGVLMALMLSS  120
            LY   W YAS+ +++ ++KAVT ++++T + + ++     F R L ++ W + + L+ +S
Sbjct  64   LYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLR-LYFITWMMHLLLIGGS  122

Query  121  RFVLRFNRENCSLLPQCLKQQPKGRATLIVGAGDAANLLIKEIQKQHDTGFRIVGLVDDN  180
            R+  R  R         + +    +ATL+VGAG+++++LI+E+ + +D   + V  VDD+
Sbjct  123  RLFWRVYRRYF------IDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDD  176

Query  181  PEKQGLKLGG-IPVLGQTSQLPKFISEFRVEDVIIAVPSAHKKFIRKIVACCKSSGVHFK  239
             +KQ + +   + V G   ++P ++  FR+  +IIA+P+  +K +  I   C+  GV++ 
Sbjct  177  KNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELF  236

Query  240  TLPSIPDLIDGSVSISQIRKVEIDDLLGRDPVQLDQQAISSYLTGKRVLVTGAAGSIGAE  299
             +P+I D++ G + +++++KVE++DLLGRDPV+LD   IS  LT K +LVTGA+GSIG+E
Sbjct  237  KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSE  296

Query  300  ICRQICAYNPAKLLILDSAETPLYHIEKELVAQFPA-LRIIPIIADVRNRDRIACLFDSF  358
            ICRQ+  ++P K+++L+ +E ++Y I++EL   +   + ++P+IADV+N+ RI  + + F
Sbjct  297  ICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEF  356

Query  359  IPQVVFHAAAYKHVPMMEYNPMEAVCNNVGGTMHLADAAHACRAERFVMISTDKAVNPTN  418
             P  V+HAAA KHVP+MEYNP EA+ NN+ GT ++A++A      +FVMISTDKAVNP+N
Sbjct  357  KPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSN  416

Query  419  VMGASKRAAELYVQALAQG-SHTCFTTVRFGNVLGSNGSVIPLFKEQILKGGPVTVTDPR  477
            VMGA+KR AE+ +Q+L ++ S T F +VRFGNVLGS GSVIPLFK+QI  GGPVTVT+P 
Sbjct  417  VMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPE  476

Query  478  VIRFFMTIPEACQLVLQAGCLGQGGDIFVLDMGEPVRILDLAEELIRLSGLTPYEDIEIV  537
            + R+FMTIPEA +LVLQAG L+QGG++FVLDMG PV+I+DLA +LIRLSG    EDI I 
Sbjct  477  MTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKE-EDIGIE  535

Query  538  FSGLRPGEKMFEELLVDGENVLPTAHEKIC  567
            FSG+RPGEK++EELL   E       EKI 
Sbjct  536  FSGIRPGEKLYEELLNKNEIHPQQVYEKIY  565

183) Clo1313_2997 in NC_017304


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  357 bits (1342),  Expect = 8e-100, Method: Compositional matrix adjust.
 Identities = 248/517 (48%), Positives = 381/517 (74%), Gaps = 12/517 (2%)

Query  62   VMKLYNSLWKYAGIYEVVMVI--AASFISNSIMISYVFLSQTPVPRSIFLICILTDIALI  119
            V +LY+  W YA++ E++ V+   +S I  ++++  +++S++P  R +++I  + ++ LI
Sbjct  61   VFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLR-LYFITWMMHLLLI  119

Query  120  GGVRFAYRVFRRIVKGEMIRFTNSKRVLiagagdagaiiVKEMKSHPELKSTPVAFVDDD  179
            GG R+  RV+RR   ++ +   + K  L+ GAG++G+++++EM    +++  PV  VDDD
Sbjct  120  GGSRLFWRVYRRYFIDNAV---EKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDD  176

Query  180  KYKIGKKISG-VPVVGETKDVSEIIQKLQIDEVIIAMPSASHKKINDIYTGCAQTNCKVK  238
            K K    I+  V V G   D++E+++K++I  +IIA+P+ S+K++N+I   C      + 
Sbjct  177  KNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELF  236

Query  239  ILPSVSQLIDESVVMQKIRDVNIEDLLGREPVHLDIEEIGSYLKDRVVMVTGGGGSIGSE  298
             +P++ +++   + +++++ V++EDLLGR+PV+LD+  I+  L ++ ++VTG+GGSIGSE
Sbjct  237  KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSE  296

Query  299  LCRQIANFLPKRLVILDNYENNAYDIQNEL--LYKHPDLKLDTVIANIREKQRMENIFKK  356
            +CRQ+++F P+++++L++ EN+ Y I++EL   Y +  + +  VIA++++K R+ ++ + 
Sbjct  297  ICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNR-IEFVPVIADVQNKTRILEVMNE  355

Query  357  YRPDVVFHAAAHKHVPLMEDNPTEAIKNNVFGTLNVAECADKYGTKRFVLISTDKAVNPT  416
            ++P  V+HAAAHKHVPLME NP EAI+NN++GT NVAE A      +FV+ISTDKAVNP+
Sbjct  356  FKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPS  415

Query  417  NIMGATKRIAEMIIQAMNE-NSKTEFVAVRFGNVLGSNGSVVPLFKKQIERGGPVTVTHP  475
            N+MGATKRIAEM+IQ++NE NSKT FVAVRFGNVLGS GSV+PLFK+QIE GGPVTVTHP
Sbjct  416  NVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHP  475

Query  476  EITRFFMTIPEAVQLVLQAGAMAKGGEIFVLDMGEPVKISELARNLIRLSGFEPDVDIKI  535
            E+TR+FMTIPEA +LVLQAGA+A+GGE+FVLDMG PVKI +LA+NLIRLSG   + DI I
Sbjct  476  EMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIGI  534

Query  536  EYIGLRPGEKLYEELMLSEEGLLATKNDKIYVTKPVH  572
            E+ G+RPGEKLYEEL+  +E       +KIY  K  H
Sbjct  535  EFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDH  571

184) capD in NC_014328


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  357 bits (1341),  Expect = 9e-100, Method: Compositional matrix adjust.
 Identities = 249/545 (46%), Positives = 387/545 (72%), Gaps = 23/545 (4%)

Query  52   VFNKVFNLYDSIWKYASVEELisivysvsvsniifviysyFINYKFLENRYYRFPYTVHI  111
            +F  VFNLY+  W YASV EL+S++ +V+ S ++ ++   ++     E+ + R+ +    
Sbjct  57   IFAYVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLI---SESPFLRLYF----  109

Query  112  IFWILSVLTLGGIRFIYRLLQDKSVGQY---KKIRNKRLLIIGAGDASAVLIKEIKKNRN  168
            I W++ +L +GG R++ R+ +     +Y   + + +K  L++GAG++++VLI+E+ ++++
Sbjct  110  ITWMMHLLLIGGSRLFWRVYR-----RYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQD  164

Query  169  FNYDVVGLVDDDETKRKKLING-IKVLGGRDDIPRICKERSIEEIIIAMPSADIKTKREI  227
               + V  VDDD  K+K  I   +KV G  +DIP + K   I  IIIA+P+   K   EI
Sbjct  165  MRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEI  224

Query  228  INICKSTKCKLKTLPGIYEMIDGNLNMSKLRDVNIEDLLGRDEVKLNNENINKYIKDKII  287
             +IC+     L  +P I +++ G+L++++L+ V++EDLLGRD V L+   I++ + +K I
Sbjct  225  NKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTI  284

Query  288  MVTGGGGSIGSELCRQIARFGPKQLLILDIYENNVYDVQMELNYNYS-KLNKAIIIASIR  346
            +VTG+GGSIGSE+CRQ+++F+P+++++L+  EN++Y ++ EL+  Y+ +++   +IA ++
Sbjct  285  LVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQ  344

Query  347  DEDRLRSIFDKYRPEVVFHAAAHKHVPLMEGNPAEAVKNNIIGTYNVLKCCDEFKVNKFV  406
            +  R+  + + ++P  V+HAAAHKHVPLME NP EA++NNI+GT NV     E  V+KFV
Sbjct  345  NKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFV  404

Query  407  QISTDKAVNPTNVMGASKRFCEIMVQAF-DEVSETEYVAVRFGNVLGSNGSVIPLFKKQI  465
             ISTDKAVNP+NVMGA+KR+ E+++Q++ ++ S T +VAVRFGNVLGS GSVIPLFK+QI
Sbjct  405  MISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQI  464

Query  466  AHGGPVTVTHPEINRFFMTIPEAAQLVIQAGAIAHGGEIFVLDMGKPVKIVDLAKDLITL  525
              GGPVTVTHPE+ R+FMTIPEA++LV+QAGA+A+GGE+FVLDMGKPVKIVDLAK+LI L
Sbjct  465  ESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRL  524

Query  526  SGYEPDVDIKIEYTGLRPGEKLYEELLMNEVALTSTEHDKIFVEKPA---KIDMTF-VEE  581
            SG   + DI IE++G+RPGEKLYEELL ++        +KI+  K     K ++ + VE+
Sbjct  525  SG-KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVED  583

Query  582  SIKQF  586
             I++F
Sbjct  584  LINNF  588

185) CLH_2929 in NC_010723


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  356 bits (1339),  Expect = 1e-99, Method: Compositional matrix adjust.
 Identities = 235/461 (51%), Positives = 343/461 (75%), Gaps = 8/461 (1%)

Query  108  LLSIFFVLGYRILYRVYRRTLLYIPFKYSSDQRRVMIVGAGSAGTMIINEMMARRELKYN  167
            ++ ++++ G R++ RVYRR   Y+ +  + +++  ++VGAG +G+++I EM+  ++++ +
Sbjct  113  MMHLLLIGGSRLFWRVYRR---YF-IDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQ  168

Query  168  PIVLIDDDKEKLGRRISG-VKIVGNRYDIPYVVGEQEIDLILIAIPSLDSKNKAEIIDIC  226
            P++ +DDDK+K    I+  VK+ G   DIP +V    I  I+IAIP+L  K   EI  IC
Sbjct  169  PVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKIC  228

Query  227  KKTNCKLQIIPGIYEILSGDANVSRIKDVDLEDLLGRDPIVLDNKGISDYIQGKTILVTG  286
            +     L  +P I ++LSG+ +V+ +K V++EDLLGRDP+ LD   IS  +  KTILVTG
Sbjct  229  NIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTG  288

Query  287  AGGSIGSELCRQISVYNPKRLILFDIYENNIYDIQNELKEEFPD-MNLTVLIGSIRDRQR  345
            AGGSIGSE+CRQ+S ++P+++IL++  EN+IY I++EL   + + +++  +I+ ++++ R
Sbjct  289  AGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTR  348

Query  346  LHEVFSKYKINVVFHAAAHKHVPLMEDSPKEAVKNNVFGTLNLATEASKANIDRFVMIST  405
            + EV + +K   V+HAAAHKHVPLME +P EA++NN++GT N+A  A  +++ +FVMIST
Sbjct  349  ILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMIST  408

Query  406  DKAVNPTNIMGATKRLCEMIVQAM-DKQSKTEFVAVRFGNVLGSNGSVIPLFKKQIANGG  464
            DKAVNP+N+MGATKR+ EM++Q++ + +SKT FVAVRFGNVLGS GSVIPLFK+QI +GG
Sbjct  409  DKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGG  468

Query  465  PVTLTHKKIVRYFMLIPEAAQLVLQAGAFAKGGEVFVLDMGKPVKIYDLACDLIRLSGFE  524
            PVT+TH  + RYFM IPEA++LVLQAGA+A+GGEVFVLDMGKPVKI DLA +LIRLSG  
Sbjct  469  PVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-K  527

Query  525  PNRDIKIVVTGLRPGEKLYEELLMSEEGLKDTDHQKIYVGK  565
             + DI I  +G+RPGEKLYEELL  +E   +   +KIY GK
Sbjct  528  KEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGK  568

186) EFD32_1900 in NC_018221


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  356 bits (1337),  Expect = 2e-99, Method: Compositional matrix adjust.
 Identities = 276/537 (52%), Positives = 401/537 (75%), Gaps = 12/537 (2%)

Query  57   YGSLFKVFTRINRYTNLREMIVIFGSLTASAGSSIIVLSFFNERYS-LRLVTFIYllsll  115
            ++ +F+++ R   Y+++ E++ ++ ++T+S   +++++S++    + LRL  +  ++ LL
Sbjct  58   FAYVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLL  117

Query  116  liigsrlVWRIYVERKNRSY--SSVESAKNTIIVGAGEGGRILYNSFIGSKTAQSIRIVG  173
            LI GSRL WR+Y     R Y   +    K T++VGAG+GG +L    + S+  +   +++
Sbjct  118  LIGGSRLFWRVY-----RRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLA  172

Query  174  FVDDDPNKQNIYLSGK-KVLGMLKDLPELIQKYDVEMVTIAIPSLSREKLRELFELVESS  232
             VDDD NKQ++ ++ + KV G + D+PEL++K+ +  + IAIP+LS+ +L E+  + +  
Sbjct  173  -VDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIE  231

Query  233  HVKVSTMPSMEELASGKTSVSKLKKIDVVDLLGRDEVELDIESIQDQITEKVILVTGAGG  292
             V +  MP++E++ SG   V++LKK++V DLLGRD VELD+  I  ++T+K ILVTGAGG
Sbjct  232  GVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGG  291

Query  293  SIGSEICRQIIQFCPAKLLLLGHGENSIYLIDRELRINDKKKRTEIVPIIADIQDRKKIH  352
            SIGSEICRQ+ +F P K++LLGHGENSIY I++EL  +   +R E+VP+IAD+Q++ +I 
Sbjct  292  SIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELS-KTYGNRIEFVPVIADVQNKTRIL  350

Query  353  EIMAQHQPDIVYHAAAHKHVPLMECNPKEAVKNNIFGTknvaeaakvakvknfvMVSTDK  412
            E+M + +P  VYHAAAHKHVPLME NP EA++NNI+GTKNVAE+AK + V +FVM+STDK
Sbjct  351  EVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDK  410

Query  413  ANNPPNVMGSTKRIAEMIVTGLNEEGC-TKFSAVRFGNVLGSRGSVIPVFREQIAKGGPV  471
            A NP+NVMG+TKRIAEM++ +LNE+   T F AVRFGNVLGSRGSVIP+F++QI  GGPV
Sbjct  411  AVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPV  470

Query  472  TITDFRMSRYFMTIPEASRLVIQSGALAKGGEIFVLDMSEPVKIVDLAKNMIRLSGYSED  531
            T+T+  M+RYFMTIPEASRLV+Q+GALA+GGE+FVLDM+ PVKIVDLAKN+IRLSG  E+
Sbjct  471  TVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEE  530

Query  532  EIEIVETGIRPGeklyeellldkeRNDEVVYEKIFVGNIKGYSMKTVMEFVDSLPQD  588
            +I I  +GIRPGEKLYEELL  +E + + VYEKI+ G++  Y    V  +V+ L ++
Sbjct  531  DIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINN  587

187) Cthe_2334 in NC_009012


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  356 bits (1337),  Expect = 2e-99, Method: Compositional matrix adjust.
 Identities = 248/517 (48%), Positives = 380/517 (74%), Gaps = 12/517 (2%)

Query  62   VMKLYNSLWKYAGIYEVVMVI--AASFISNSIMISYVFLSQTPVPRSIFLICILTDIALI  119
            V +LY+  W YA++ E++ V+   +S I  ++++  +++S++P  R +++I  + ++ LI
Sbjct  61   VFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLR-LYFITWMMHLLLI  119

Query  120  GGVRFAYRVFRRIVKGEMIRFTNSKRVLiagagdagaiiVKEMKSHPKLKSTPVAFVDDD  179
            GG R+  RV+RR   ++ +   + K  L+ GAG++G+++++EM     ++  PV  VDDD
Sbjct  120  GGSRLFWRVYRRYFIDNAV---EKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDD  176

Query  180  KYKIGKKISG-VPVVGETKDVSEIIQKLQIDEVIIAMPSASHKKINDIYTGCAQTNCKVK  238
            K K    I+  V V G   D++E+++K++I  +IIA+P+ S+K++N+I   C      + 
Sbjct  177  KNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELF  236

Query  239  ILPSVSQLIDESVVMQKIRDVNIEDLLGREPVHLDIEEIGSYLKDRVVMVTGGGGSIGSE  298
             +P++ +++   + +++++ V++EDLLGR+PV+LD+  I+  L ++ ++VTG+GGSIGSE
Sbjct  237  KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSE  296

Query  299  LCRQIANFLPKRLVILDNYENNAYDIQNEL--LYKHPDLKLDTVIANIREKQRMENIFKK  356
            +CRQ+++F P+++++L++ EN+ Y I++EL   Y +  + +  VIA++++K R+ ++ + 
Sbjct  297  ICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNR-IEFVPVIADVQNKTRILEVMNE  355

Query  357  YRPDVVFHAAAHKHVPLMEDNPTEAIKNNVFGTLNVAECADKYGTKRFVLISTDKAVNPT  416
            ++P  V+HAAAHKHVPLME NP EAI+NN++GT NVAE A      +FV+ISTDKAVNP+
Sbjct  356  FKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPS  415

Query  417  NIMGATKRIAEMIIQAMNE-NSKTEFVAVRFGNVLGSNGSVVPLFKKQIERGGPVTVTHP  475
            N+MGATKRIAEM+IQ++NE NSKT FVAVRFGNVLGS GSV+PLFK+QIE GGPVTVTHP
Sbjct  416  NVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHP  475

Query  476  EITRFFMTIPEAVQLVLQAGAMAKGGEIFVLDMGEPVKISELARNLIRLSGFEPDVDIKI  535
            E+TR+FMTIPEA +LVLQAGA+A+GGE+FVLDMG PVKI +LA+NLIRLSG   + DI I
Sbjct  476  EMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIGI  534

Query  536  EYIGLRPGEKLYEELMLSEEGLLATKNDKIYVTKPVH  572
            E+ G+RPGEKLYEEL+  +E       +KIY  K  H
Sbjct  535  EFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDH  571

188) Cthe_2650 in NC_009012


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  356 bits (1338),  Expect = 2e-99, Method: Compositional matrix adjust.
 Identities = 237/511 (47%), Positives = 365/511 (72%), Gaps = 6/511 (1%)

Query  58   IFGIYSMLWNYASVEELLKIFWATMTSVIVQLLLAAYFNVMFP-VSVYITCWMITFYFIG  116
            +F +Y   W+YASV EL+ ++ A  +S++V LLL + +    P + +Y+  WM+ + +IG
Sbjct  61   VFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIG  120

Query  117  GTRFIVRITRSIkakkrknthkkRIMIIGAGDTASLLIKETKNNKRSIYEPVVAIDDDPK  176
            G+R++ R+ R     +  +      +++GAG+ +S+LI+E   ++    +PV+A+DDD +
Sbjct  121  GSRLFWRVYRRYFIDNAVEKKA--TLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKN  178

Query  177  KHNTQING-VPIIGGRDKIIEAAKDMSIEEIVLAMPSVSKKETLEIIDLCQKTGCKLKVL  235
            K++  I   V + G  + I E  K   I  I++A+P++S+K   EI  +C+  G  L  +
Sbjct  179  KQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKM  238

Query  236  PSVYGIVNGEVSIKEIRDVTVEDLLPRDEISLSIEEISGYLKGETILVTGGGGSIGSELC  295
            P++ ++++GE+ +++++ V VEDLL RD + L +  IS  L   TILVTG+GGSIGSE+C
Sbjct  239  PNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEIC  298

Query  296  RQIASYEPKTLLVFDIYENNAYELQNELVQKYKGNLDIKVIIGSIRDKKRLDYVFSQYKP  355
            RQ++ ++P+ +++++  EN+ Y +++EL + Y   +++  +I+ +++K R+  V +++KP
Sbjct  299  RQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKP  358

Query  356  GIVFHAAAHKHVPLMEFNPQEAVKNNVFGTLNVAECAHQYNCKKFVLISTDKAVNPTSIM  415
              V+HAAAHKHVPLME+NP+EA++NN++GT NVAE A + +  KFV+ISTDKAVNP+++M
Sbjct  359  YAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVM  418

Query  416  GATKRIAELIIQYMN-SISKTKFCAVRFGNVLDSNGSVIPLFKKQIEQGGPITITHPEVS  474
            GATKRIAE++IQ +N   SKT F AVRFGNVL+S GSVIPLFK+QIE GGP+T+THPE++
Sbjct  419  GATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMT  478

Query  475  RYFMTIPEAVSLVIQSGAMMEGGEIFILDMGKPVKITDLARTLISLSGLKPGVDIDIEYI  534
            RYFMTIPEA  LV+Q+GA+ +GGE+F+LDMGKPVKI DLA+ LI LSG K   DI+IE+ 
Sbjct  479  RYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIGIEFS  537

Query  535  GLRPGEKLHEELLISEEGVSVTKNDKIFIEK  565
            G+RPGEKL EELL  +E  +    +KI+  K
Sbjct  538  GIRPGEKLYEELLNKNEIHPQQVYEKIYRGK  568

189) Clo1313_0239 in NC_017304


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  355 bits (1335),  Expect = 3e-99, Method: Compositional matrix adjust.
 Identities = 237/511 (47%), Positives = 364/511 (72%), Gaps = 6/511 (1%)

Query  58   IFGIYSMLWNYASVEELLKIFWATMTSVIVQLLLAAYFNVMFP-VSVYITCWMITFYFIG  116
            +F +Y   W+YASV EL+ ++ A  +S++V LLL + +    P + +Y+  WM+ + +IG
Sbjct  61   VFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIG  120

Query  117  GTRFIVRITRSIkakkrknthkkRIMIIGAGDTASLLIKETKNNKRSIYEPVVAIDDDPK  176
            G+R++ R+ R     +  +      +++GAG+ +S+LI+E   ++    +PV+A+DDD +
Sbjct  121  GSRLFWRVYRRYFIDNAVEKKA--TLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKN  178

Query  177  KHNTQING-VPIIGGRDKIIEAAKDMSIEEIVLAMPSVSKKETLEIIDLCQKTGCKLKVL  235
            K++  I   V + G  + I E  K   I  I++A+P++S+K   EI  +C+  G  L  +
Sbjct  179  KQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKM  238

Query  236  PSVYGIVNGEVSIKEIRDVTVEDLLPRDEISLSIEEISGYLKGETILVTGGGGSIGSELC  295
            P++ ++++GE+ +++++ V VEDLL RD + L +  IS  L   TILVTG+GGSIGSE+C
Sbjct  239  PNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEIC  298

Query  296  RQIASYEPKTLLVFDIYENNAYELQNELVQKYKGNLDIKVIIGSIRDKKRLDYVFSQYKP  355
            RQ++ ++P+ +++++  EN+ Y +++EL + Y   +++  +I+ +++K R+  V +++KP
Sbjct  299  RQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKP  358

Query  356  GIVFHAAAHKHVPLMEFNPQEAVKNNVFGTLNVAECAHQYNCKKFVLISTDKAVNPTSIM  415
              V+HAAAHKHVPLME+NP+EA++NN++GT NVAE A + +  KFV+ISTDKAVNP+++M
Sbjct  359  YAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVM  418

Query  416  GATKRIAELIIQYMN-SISKTKFCAVRFGNVLDSNGSVIPLFKKQIEQGGPITITHPEVS  474
            GATKRIAE++IQ +N   SKT F AVRFGNVL+S GSVIPLFK+QIE GGP+T+THPE++
Sbjct  419  GATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMT  478

Query  475  RYFMTIPEAVSLVIQSGAMMEGGEIFILDMGKPVKITDLARTLISLSGLKPGVDIDIEYI  534
            RYFMTIPEA  LV+Q+GA+ +GGE+F+LDMGKPVKI DLA+ LI LSG K   DI+IE+ 
Sbjct  479  RYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIGIEFS  537

Query  535  GLRPGEKLHEELLISEEGVGVTKNDKIFIEK  565
            G+RPGEKL EELL  +E       +KI+  K
Sbjct  538  GIRPGEKLYEELLNKNEIHPQQVYEKIYRGK  568

190) Exig_2574 in NC_010556


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  355 bits (1333),  Expect = 4e-99, Method: Compositional matrix adjust.
 Identities = 242/450 (54%), Positives = 339/450 (76%), Gaps = 12/450 (2%)

Query  148  KRTLIIGAGASGQMITKE-LKQKKAHILNVVGLLDDLTELKGMMIHGVPVIGTIDQLECI  206
            K TL++GAG +G ++ +E L+ +  ++  V+++ DD    K  + + V V G ++++  +
Sbjct  141  KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPEL  200

Query  207  IEEHKIEAVVLAIPSLAYPDRVALLNRI-KQTKVEAHTLPMLVELASGKVSVNQMREVSI  265
            +   +I  +++AIP+L+   R+  +N+I +   VE   +P + ++ SG + VN+++ V +
Sbjct  201  VKKFRIKKIIIAIPTLS-QKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEV  259

Query  266  ADLLGREPVELDITEIEKSVSQATVLVTGAGGSIGSEICRQLIKFKPDHLILLGHGENSI  325
             DLLGR+PVELD++ I + +++ T+LVTGAGGSIGSEICRQ+ KF P+ +ILLGHGENSI
Sbjct  260  EDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSI  319

Query  326  YLIRRELEAV-TEGITLHSVIADVQDADRMMDVMERFKPDLVYHAAAHKHVPLMEDNPSE  384
            Y I++EL     + I + +VIADVQ+  R+++VM+ FKP  VYHAAAHKHVPLME NP E
Sbjct  320  YSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHE  379

Query  385  AVKNNIYGTRNVALAAEAAGVNRFVMISTDKAVNPTSVMGATKRIAEMVIQQIAR-NSET  443
            A++NNI GT+NVA +A  + V++FVMISTDKAVNP++VMGATKRIAEMVIQ +   NS T
Sbjct  380  AIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKT  439

Query  444  TFAVVRFGNVLGSRGSVIPLFKDQIAKGGPITVTDPAMTRYFMTIPEASRLVIQASVLAE  503
            +F  VRFGNVLGSRGSVIPLFK+QI  GGP+TVT+P MTRYFMTIPEASRLV+QA+ LA+
Sbjct  440  SFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQ  499

Query  504  GGEVFVLDMGEPVNITTLARNLIHLSGFTEQQIPIVYSGIRKGEKLYeellateevheeR  563
            GGEVFVLDMG PV+I  LA+NLI+LSG  E++I I +SGIR GEKLYEELL  +E+H ++
Sbjct  500  GGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQ  559

Query  564  VFDKILVGKTRPFGSIDPYLR-NIALTLDD  592
            V++KI  GK      +D Y++ ++ L ++D
Sbjct  560  VYEKIYRGK------VDHYIKTEVDLIVED  583

191) capD in NC_016894


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  355 bits (1333),  Expect = 4e-99, Method: Compositional matrix adjust.
 Identities = 247/518 (48%), Positives = 380/518 (74%), Gaps = 11/518 (2%)

Query  57   IYRY-FELYSSLWSYASVDEFMKILIAGFVTNVFSTVYLILMGAQ-LFFGVYITAMILEV  114
            I+ Y F+LY   W YASV E+M +L A   + V + + + L+ ++  F+ +Y+ + ++++
Sbjct  57   IFAYVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHL  116

Query  115  GFIGGVRFSYrllrnlknknlfnkQEHEKKILIIGSGSTATLIATE-IRNHASNYGQVIG  173
             +IGG R+  R+ R     N      + K  L++G+G  ++++  E +R++      V++
Sbjct  117  LLIGGSRLFWRVYRRYFIDNAV----EKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLA  172

Query  174  FIDDDENKLNKSISG-VKVLGNYHDIYGIVYKYHINEIIIAVPTAGPYTVRMVIAECKRT  232
             +DDD NK + +I+  VKV G  +DI  +V K++I+ IIIA+PT +   +  +   C+  
Sbjct  173  -VDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIE  231

Query  233  DAKVRIMPGIREVIDGQVSLNKIRGVEIEDLLGRDSVNLHVTEVISYIENKTILVTGGGG  292
            +  +  MP I +V+ G++ +N+++ VE+EDLLGRD+V+L+++ +   + NKTILVTG+GG
Sbjct  232  GVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGG  291

Query  293  SIGSELCRQLAKFNPKKLVILDNYENNAYEIQNELIKEYGTKLNLEIIIASVRDRYNIFT  352
            SIGSE+CRQ++KF+P+K+++L++ EN+ Y I++EL K YG ++++  +IA V+++  I+ 
Sbjct  292  SIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILE  351

Query  353  IIGSLRPDVIFHAAAHKHVPLMEHSPREAIKNNAFGTRNVAEAAHEYDVERFVLISTDKA  412
            ++  ++P  ++HAAAHKHVPLME +P+EAI+NN +GT+NVAE+A E +V +FV+ISTDKA
Sbjct  352  VMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKA  411

Query  413  VNPTNIMGASKRICEMIIQGLA-KKSKTKFTAVRFGNVLDSNGSVVPLFKKQIKEGGPVT  471
            VNP+N+MGA+KRI EM+IQ+L   +SKT F AVRFGNVL+S GSV+PLFK+QI  GGPVT
Sbjct  412  VNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVT  471

Query  472  VTHKDIIRYFMTIPEAAQLVIQSGAIAKGGEIFILDMGEPVKIYDLAVDLIKLSGLKLDE  531
            VTH ++ RYFMTIPEA++LV+Q+GA+A+GGE+F+LDMG PVKI DLA +LI+LSG K +E
Sbjct  472  VTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEE  530

Query  532  DIKIEITGLRPGEKLYEELLMDEEGLTDTKFEKIHIGK  569
            DI IE++G+RPGEKLYEELL  +E   +  +EKI  GK
Sbjct  531  DIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGK  568

192) SP70585_0166 in NC_012468


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  353 bits (1325),  Expect = 2e-98, Method: Compositional matrix adjust.
 Identities = 234/434 (54%), Positives = 330/434 (77%), Gaps = 7/434 (1%)

Query  151  EHRRTFLIGAGDGGALFMDSYQHPTSELELVGILDKDAKKKGQRLG---GIPVLGSYDNL  207
            E + T+++GAG+GG++++      + ++ +  +L  D  K+ Q++     + V G  +++
Sbjct  139  EKKATLVVGAGQGGSVLIRE-MLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDI  197

Query  208  SELAKRHQIERVIVAIPSLDPLEYERILQMCNKLGVKCYKMPKVETVVQGLHQAGTGFQK  267
            +EL K+ +I ++I+AIP+L     + I ++CN  GV  +KMP++E V+ G +     ++K
Sbjct  198  PELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSG-ELEVNNLKK  256

Query  268  IDITDLLGRQEIRLDESRLGAELTGKTILVTGAGGSIGSEICRQVSRFNPERIVLLGHGE  327
            +++ DLLGR+ + LD + ++ ELT KTILVTGAGGSIGSEICRQVS+F+P++I+LLGHGE
Sbjct  257  VEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGE  316

Query  328  NSIYLVYHELIREIQG-IDYVPVIADIQDYDRLLQVFEQYKPAIVYHAAAHKHVPMMERN  386
            NSIY + +EL +     I++VPVIAD+Q+  R+L+V +++KP  VYHAAAHKHVP+ME N
Sbjct  317  NSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYN  376

Query  387  PKEAFKNNIRGTYNVAKAVDEAKVSKMVMISTDKAVNPPNVMGATKRVAELIVTGFNQ-R  445
            P EA++NNI GT NVA +  E+ VSK VMISTDKAVNP+NVMGATKR+AE+++ ++N+  
Sbjct  377  PHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDN  436

Query  446  SQSTYCAVRFGNVLGSRGSVIPVFERQIAEGGPVTVTDFRMTRYFMTIPEASRLVIHAGA  505
            S++++ AVRFGNVLGSRGSVIP+F  QI  GGPVTVT+  MTRYFMTIPEASRLV++AGA
Sbjct  437  SKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGA  496

Query  506  YAKDGEVFILDMGKPVKIYDLAKKMVLLSGHTESEIPIVEVGIRPGEKLYEELLVSTELV  565
             A++GEVF+LDMGKPVKI DLAK+++ LSG  E +I I   GIRPGEKLYEELL   E+ 
Sbjct  497  LAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIH  556

Query  566  DNQVMDKIFVGKVN  579
             +QV +KI+ GKV+
Sbjct  557  PQQVYEKIYRGKVD  570

193) Desor_5144 in NC_016584


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  352 bits (1323),  Expect = 2e-98, Method: Compositional matrix adjust.
 Identities = 258/533 (49%), Positives = 380/533 (72%), Gaps = 32/533 (6%)

Query  64   NRLWQYASISELLSIVYAVTVGT------------SSVVLVIYFLAPVRYPHTVAVLLWL  111
            +R W+YAS+SEL+S++ AVT +              S  L +YF++            W+
Sbjct  66   HRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFIT------------WM  113

Query  112  TTMFLIGGSRFLGRILQDSVFNLHLSGIPKRiliigagdagalaVRE-LKNSNYREGYPV  170
              ++LIGGSR++ R+ +   + ++ +   K  L++GAG++G++ +RE L++ + R   PV
Sbjct  114  MHLLLIGGSRLFWRVYRR--YFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQ-PV  170

Query  171  GIIDDAPEKQKLKLMG-IPVLGTRKDIPrvvrsrrveevIIAMPSASGNVIRDMTEICEK  229
              +DD  +KQK+ +   + V G   DIP +V+  R+  +IIA+P+ S + + ++  IC+ 
Sbjct  171  LAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNI  230

Query  230  SGLVIKIIPGIYNYFSGVVDSLKIREVQIEDLLGREQVNLDIEEVAGYLTGETVLITGAG  289
             G+ +  +P I + +SG ++  +++ V++EDLLGR+ V+LD+  ++  LT  T+L+TGAG
Sbjct  231  EGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAG  290

Query  290  GSIGSELCRQICRFNPQRLILVGRGENSIFDIEQELRSECPG-INLFTEILDVKERDKVE  348
            GSIGSE+CRQ+ +F+PQ++IL+G+GENSI+ I+QEL       I++   I DV+++ ++ 
Sbjct  291  GSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRIL  350

Query  349  LVFRRFKPGVVFHAAAHKHVPLMERNPEEALKNNILGTYNLAEISDAIKVNTFVLISTDK  408
             V   FKP  V+HAAAHKHVPLME NP+EA++NNILGT N+AE +    V+ FV+ISTDK
Sbjct  351  EVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDK  410

Query  409  AINPTSIMGATKRVAEMIIQSF-DRQSQTRFVAVRFGNVLGSRGSVIPTFKKQIAKGGPV  467
            A+NP+++MGATKR+AEM+IQS+ + +S+T FVAVRFGNVLGSRGSVIP FK+QI  GGPV
Sbjct  411  AVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPV  470

Query  468  TVTHPEMVRYFMTIPEASQLVIQAGAMAQGGEVFILDMGKPVKIVDLARDLIRLSGLEVD  527
            TVTHPEM RYFMTIPEAS+LV+QAGA+AQGGEVF+LDMGKPVKIVDLA++LIRLSG   +
Sbjct  471  TVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKE  529

Query  528  VDIKIEYTGIRPGEKLYEELLTAEEGTTSTKHQRIFVAKPNGIDVAEIEGLVQ  580
             DI IE++GIRPGEKLYEELL  +E       ++I+ +K +    +E++ +V+
Sbjct  530  EDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVE  582

194) HMPREF9243_0860 in NC_015278


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  352 bits (1323),  Expect = 3e-98, Method: Compositional matrix adjust.
 Identities = 250/486 (52%), Positives = 365/486 (76%), Gaps = 13/486 (2%)

Query  105  SFLLLFFSTAFMLL-----ARMLWRTYVDEKNHVRSKSDNNAPRLLLVGAGDAGNLFIES  159
            +FL L+F T  M L     +R++WR Y   +  + +  +++A   L+VGAG++G+++I  
Sbjct  103  PFLRLYFITWMMHLLLIGGSRLFWRVY--RRYFIDNAVEKKAT--LVVGAGQGGSVLIRE  158

Query  160  FAKAGD-RFTIVGLVDDDPNKQGVYLRG-YPVLGPIDQIPQIIDAKRVDQITITAPSLPS  217
              ++ D R   V  VDDD NKQ + +     V G +++IP+++   R+ +I I+ P+L+ 
Sbjct  159  MLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQ  218

Query  218  EKVEEVIRLANEKDISVKQMPEVERVMAGDLQVA-MRDIEINDLLGREEVELDDQAAIDT  276
             +++E+ ++ N  ++ + +MP++E V++G+L+V  ++ +E++DLLGR+ VELD       
Sbjct  219  KRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRE  278

Query  277  IGGKTILVTGAGGSIGSEICRQllkfgpakllllgHGENSIYLIDRELNQLNQSGVQIVP  336
            +  KTILVTGAGGSIGSEICRQ+ KF+P K++LLGHGENSIY I++EL++   + +++VP
Sbjct  279  LTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVP  338

Query  337  IIADIQDRDHINDLVKFYQPNIIYHAAAHKHVPLMEYNPTEAVKNNIYGTYNVARAAEEN  396
            +IAD+Q++ +I ++++ ++P  +YHAAAHKHVPLMEYNP EA++NNI GT NVA +A E 
Sbjct  339  VIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEG  398

Query  397  GVERFVMISTDKANNPPNVMGATKRIAEMIVTGLNE-NSQCTFSAVRFGNVLGSRGSVIP  455
             V +FVMISTDKA NP+NVMGATKRIAEM++ +LNE NS+ +F AVRFGNVLGSRGSVIP
Sbjct  399  EVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIP  458

Query  456  LFKKQIAAGGPVTVTHPDMRRYFMTIPEASRLVIQASSLAEGGELFILNMGKEVYIKDLA  515
            LFK+QI +GGPVTVTHP+M RYFMTIPEASRLV+QA++LA+GGE+F+L+MGK V I DLA
Sbjct  459  LFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLA  518

Query  516  RKMITLSGYSEDEIEIKYVGMRPGEKLYetlllddettdRQVDDKIFVGKVHNKSLKEIR  575
            +++I LSG  E++I I + G+RPGEKLYE LL  +E   +QV +KI+ GKV++    E+ 
Sbjct  519  KNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVD  578

Query  576  SFVEGL  581
             +VE+L
Sbjct  579  LIVEDL  584

195) CLL_A3186 in NC_010674


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  350 bits (1314),  Expect = 1e-97, Method: Compositional matrix adjust.
 Identities = 234/461 (51%), Positives = 342/461 (75%), Gaps = 8/461 (1%)

Query  108  LLSIFFVLGYRILYRVYRRTLLYIPFKYSSDQRRVMIVGAGSAGTMIINEMMARRELKYN  167
            ++ ++++ G R++ RVYRR   Y+ +  + +++  ++VGAG +G+++I EM+  ++++ +
Sbjct  113  MMHLLLIGGSRLFWRVYRR---YF-IDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQ  168

Query  168  PIVLIDDDKEKLGRRISG-VKIVGNRYDIPYVVGEQEidlilisipsldsKNKAEIIDIC  226
            P++ +DDDK+K    I+  VK+ G   DIP +V    I  I+I+IP+L  K   EI  IC
Sbjct  169  PVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKIC  228

Query  227  KKTNCKLQIIPGIYEILSGDANVSRIKDVDLEDLLGRDPIVLDNKGISDYIQGKTILVTG  286
            +     L  +P I ++LSG+ +V+ +K V++EDLLGRDP+ LD   IS  +  KTILVTG
Sbjct  229  NIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTG  288

Query  287  AGGSIGSELCRQISVYNPKRLILFDIYENNIYDIQNELKEEFPD-MNLTVLIGSIRDRQR  345
            AGGSIGSE+CRQ+S ++P+++IL++  EN+IY I++EL   + + +++  +I+ ++++ R
Sbjct  289  AGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTR  348

Query  346  LHEVFSKYKINVVFHAAAHKHVPLMEDSPKEAVKNNVFGTLNLATEASKAKIDRFVMIST  405
            + EV + +K   V+HAAAHKHVPLME +P EA++NN++GT N+A  A  + + +FVMIST
Sbjct  349  ILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMIST  408

Query  406  DKAVNPTNIMGATKRLCEMIVQAM-DKQSKTEFVAVRFGNVLGSNGSVIPLFKKQIANGG  464
            DKAVNP+N+MGATKR+ EM++Q++ + +SKT FVAVRFGNVLGS GSVIPLFK+QI +GG
Sbjct  409  DKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGG  468

Query  465  PVTLTHKKIVRYFMLIPEAAQLVLQAGAFAKGGEVFVLDMGKPVKIYDLACDLIRLSGFE  524
            PVT+TH  + RYFM IPEA++LVLQAGA+A+GGEVFVLDMGKPVKI DLA +LIRLSG  
Sbjct  469  PVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-K  527

Query  525  PNRDIKIVVTGLRPGEKLYEELLMSEEGLKDTAHQKIYVGK  565
             + DI I  +G+RPGEKLYEELL  +E   +   +KIY GK
Sbjct  528  KEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGK  568

196) Tlie_1827 in NC_016148


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  350 bits (1316),  Expect = 1e-97, Method: Compositional matrix adjust.
 Identities = 238/508 (47%), Positives = 364/508 (72%), Gaps = 8/508 (1%)

Query  58   YLGRLYHRMWRYASIRELYGLLKAATAGAVIMVVLIYALGFPTLPRSVYILSWFFIIAFV  117
            Y+  LYHR W YAS+ EL ++LKA T++ V+ ++L+  L   +    +Y+++W   + ++
Sbjct  60   YVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLI  119

Query  118  GSSRLGWRLVRDMMLANRNSPSSRVLIIGAGDAGAMVAREIMNNRKLNLEAVGFIDDNPM  177
            G+SRL WR+ R   + N        L++GAG++G+++ RE++ ++ + +++V  +DD+  
Sbjct  120  GGSRLFWRVYRRYFIDN-AVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKN  178

Query  178  KQKLSIYG-IPVLGTREAIPRIVREYHIDEIIIAMPSAGGRTIREINQICRQIGAKARIF  236
            KQK++I   + V G  E IP +V+ ++I  IIIA+P+ + + + EIN+IC   G      
Sbjct  179  KQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKM  238

Query  237  QGADTLLGRKYRI---KEIELDDLLKREPVKLNLDEIAGYLKDKTVLVSGAGGSIGSELC  293
               + +L+    +   K +E++DLL R+PV L++  I+  L +KT+LV+GAGGSIGSE+C
Sbjct  239  PNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEIC  298

Query  294  RQIAVNKPKRLILLDCSENDLFEIENELRENLPA-LDIVPELADIRDKERLIHIFGTCRP  352
            RQ++   P+++ILL+ +EN ++ I++EL       +++VP +AD+++K R++++    +P
Sbjct  299  RQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKP  358

Query  353  QVVFHAAAYKHVPMMEKHPLEAVKNNIFGTRNLAEAADRFQSETFILISTDKAVNPSNVM  412
              V+HAAA KHVP+ME +P EA++NNI+GT+N+AE+A   +   F++ISTDKAVNPSNVM
Sbjct  359  YAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVM  418

Query  413  GATKRAAELIIQEMN-HKSQTTFAAVRFGNVLGSRGSVVPIFRKQIEKGGPVTVTHPEMT  471
            GATKR AE++IQ +N ++S+T+F AVRFGNVLGSRGSV+P+F++QIE GGPVTVTHPEMT
Sbjct  419  GATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMT  478

Query  472  RYFMTIPEAVQLVIQAGAMAMGGEIFVLDMGEPVRIMDLAYDMIRLVGYQPGEDIEIKIT  531
            RYFMTIPEA +LV+QAGA+A GGE+FVLDMG PV+I+DLA ++IRL G +  EDI I ++
Sbjct  479  RYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIGIEFS  537

Query  532  GIRPGEKLHEELFAAREQIEATRHERIF  559
            GIRPGEKL EEL+   E       E+I+
Sbjct  538  GIRPGEKLYEELLNKNEIHPQQVYEKIY  565

197) Eab7_2414 in NC_018665


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  350 bits (1313),  Expect = 2e-97, Method: Compositional matrix adjust.
 Identities = 244/450 (55%), Positives = 339/450 (76%), Gaps = 11/450 (2%)

Query  148  KRTLIIGAGASGQMITKE-LKQKKAHILNVVGLLDDLPELKGMMIHGVPVIGTIEQLECI  206
            K TL++GAG +G ++ +E L+ +  ++  V+++ DD    K  + + V V G +E++  +
Sbjct  141  KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPEL  200

Query  207  IEEFKIEAVVLAIPSLSYPDRVSLLNRI-KQTKVEAHTLPMLVELASGQVSVNQIREVSI  265
            +  F+I  +++AIP+LS   R++ +N+I +   VE   +P + ++ SG++ VN+++ V +
Sbjct  201  VKKFRIKKIIIAIPTLS-QKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEV  259

Query  266  ADLLGREPVELDITEIEKSVSQATVLVTGAGGSIGSEICRQLVKFKPEHLILLGHGENSI  325
             DLLGR+PVELD++ I + +++ T+LVTGAGGSIGSEICRQ+ KF P+ +ILLGHGENSI
Sbjct  260  EDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSI  319

Query  326  YLIRRELEAE-TEGITLHSVIADVQDADRMMDVMHRFKPDLVYHAAAHKHVPLMEDNPSE  384
            Y I++EL     + I + +VIADVQ+  R+++VM+ FKP  VYHAAAHKHVPLME NP E
Sbjct  320  YSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHE  379

Query  385  AVKNNVYGTRNVALAAEAAGVNRVVMISTDKAVNPTSVMGATKRIAEMVIQQIAR-NSQT  443
            A++NN+ GT+NVA +A  + V++ VMISTDKAVNP++VMGATKRIAEMVIQ +   NS+T
Sbjct  380  AIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKT  439

Query  444  TFAVVRFGNVLGSRGSVIPLFKEQIAKGGPITVTDPAMTRYFMTIPEASRLVIQASVLAE  503
            +F  VRFGNVLGSRGSVIPLFK+QI  GGP+TVT+P MTRYFMTIPEASRLV+QA+ LA+
Sbjct  440  SFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQ  499

Query  504  GGEVFVLDMGEPVNITTLARNLIHLSGFTEEQIPIVYSGIRKGEKLYeellateevheeR  563
            GGEVFVLDMG PV+I  LA+NLI+LSG  EE+I I +SGIR GEKLYEELL  +E+H ++
Sbjct  500  GGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQ  559

Query  564  VFEKILVGKTCPFGSIDPYLRNIASAIDDE  593
            V+EKI  GK      +D Y++     I ++
Sbjct  560  VYEKIYRGK------VDHYIKTEVDLIVED  583

198) epsC in NC_018870


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  350 bits (1314),  Expect = 2e-97, Method: Compositional matrix adjust.
 Identities = 231/510 (46%), Positives = 360/510 (71%), Gaps = 23/510 (4%)

Query  64   RKMWQYASVREIYDILEGVTIGGLLVVAFAYVFVYQQGAVHPLPRSVYLIAWLLNLLLTG  123
            ++ W+YASV E+  +L +VT + ++ + +         +  P+ R +Y+I+W+++LLL G
Sbjct  66   HRAWEYASVSELMSVLKAVTSSIVVTLLLVS----LLISESPFLR-LYFITWMMHLLLIG  120

Query  124  GSRFCLRSFREFRGNSGADGNEQAEAAPQLRRRALIVGAGDAGAMVVRELQNHPSLGLDP  183
            GSR+  R +R +  +++ +           ++ +L+VGAG++G++++RE+     + ++P
Sbjct  121  GSRLFWRVYRRYFIDNAVE-----------KKATLVVGAGQGGSVLIREMLRSQDMRMQP  169

Query  184  VGFIDDNPHKHGLYLLG-LPVLGRREDIPGVAGKYDVDEIIIAIPSAPGRVIREIVDICK  242
            V  +DD+ +K+ + +   + V G  EDIP +  K+ +  IIIAIP+ + + + EI  IC+
Sbjct  170  VLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICN  229

Query  243  KTGARLKTLPGVYELIDGRVSVSQIRDVQVEDLLGREPVQLNLDEIAAYLTGKVILVTGA  302
              G  L  +P + +++ G + V++++ V+VEDLLGR+PV+L++  I+  LT K ILVTGA
Sbjct  230  IEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGA  289

Query  303  GGSIGSELCRQIARFNPASLILLDNAENNLFEIEQEIRERFPG-LNAPAQLADIRDRELI  361
            GGSIGSE+CRQ+++F+P  +ILL+++EN+++ I+QE+   +   ++  + +AD++++  I
Sbjct  290  GGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRI  349

Query  362  ELIFEEYRPQVVFHAAAYKHVPMMERFPEHAVSNNVYGTYNVASAAERYGAEIFILVSTD  421
              + +E++P  V+HAAA KHVP+ME  P++A+ NN+ GT NVA +A       F+++STD
Sbjct  350  LEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTD  409

Query  422  KAVRPTSVMGASKRVAELLIQHFDGRSKARGGKTRYAAVRFGNVLGSRGSVVPIFKRQIA  481
            KAV P++VMGA+KR+AE++IQ ++  +    +KT + AVRFGNVLGSRGSV+P+FK QI 
Sbjct  410  KAVNPSNVMGATKRIAEMVIQSLNEDN----SKTSFVAVRFGNVLGSRGSVIPLFKNQIE  465

Query  482  RGGPVTVTHPEMVRYFMTIPEAVQLIIQAGALAQGGEIFVLDMGEPVRIVDLASDLIRLS  541
             GGPVTVTHPEM RYFMTIPEA +L++QAGALAQGGE+FVLDMG PV+IVDLA +LIRLS
Sbjct  466  SGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLS  525

Query  542  GLEPGEDIEIRFTGIRPGEKLKEELFTDRE  571
            G    EDI I F+GIRPGEKL EEL+   E
Sbjct  526  G-KKEEDIGIEFSGIRPGEKLYEELLNKNE  554

199) EAT1b_1378 in NC_012673


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  350 bits (1316),  Expect = 9e-98, Method: Compositional matrix adjust.
 Identities = 244/456 (54%), Positives = 347/456 (77%), Gaps = 11/456 (2%)

Query  124  MLFIRLVARTRSFFQ-----FHAPVSNGKATLVIGGGESGQKIIKE-LKEHRTNVLHVVG  177
            M+ + L++ +R F +     F     + KATLV+G+G++G  +I+E L+ +   +  V++
Sbjct  113  MMHLLLIGGSRLFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLA  172

Query  178  VLDDNPMLHRLYIHGTPVIGSIDLLERKIEELNIEVVVLAIPSLPYGDRVQLLKRI-EKT  236
            V DD+        +   V G ++ +   +  + I  +++AIP+L+   R++ +++I +  
Sbjct  173  VDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLS-QKRLNEINKICNIE  231

Query  237  GVESHALPMLAELASGKVSLNEIREVAIEDLLGREPVQLDVSEISQTLSGLTifisgagg  296
            GVE   +P + ++ SG + +N+++ V +EDLLGR+PV+LD++ IS+ L+  TI+++GAGG
Sbjct  232  GVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGG  291

Query  297  sigsELCRQLMKFNPGKLILFGHGENSIYAIDREL-RLLGSDTEICPVIGDVQDRARVTE  355
            SIGSE+CRQ+ KF+P K+IL+GHGENSIY+I++EL +  G+  E+ PVI+DVQ+++R+ E
Sbjct  292  SIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILE  351

Query  356  VFDQYRPDVVYHAAAHKHVPLMEDNPREAVKNNIYGTKNMVEAADFFEVKRFVMISTDKA  415
            V ++++P  VYHAAAHKHVPLME NP+EA++NNI GTKN+ E+A   EV +FVMISTDKA
Sbjct  352  VMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKA  411

Query  416  VNPTNVMGATKRVAEMIVQQ-QARHSETTFSVVRFGNVLGSRGSVVPLFKEQIQRGGPIT  474
            VNP+NVMGATKR+AEM++Q  +  +S T+F  VRFGNVLGSRGSV+PLFK+QI+ GGP+T
Sbjct  412  VNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVT  471

Query  475  VTHPEMTRYFMTIPEASRLVIQASVRANGGEVFVLDMGNPVKIVDLAKRMITLSGFTLEQ  534
            VTHPEMTRYFMTIPEASRLV+QA+  A+GGEVFVLDMG+PVKIVDLAK +I LSG   E+
Sbjct  472  VTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEED  531

Query  535  IPIHFSGIRPGEKLFEELLATSE-HTNQVYEKIFVG  569
            I I+FSGIRPGEKL+EELL  +E H +QVYEKI+ G
Sbjct  532  IGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRG  567

200) Swol_0128 in NC_008346


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  349 bits (1310),  Expect = 3e-97, Method: Compositional matrix adjust.
 Identities = 244/510 (48%), Positives = 369/510 (73%), Gaps = 12/510 (2%)

Query  60   YAMRLYHRMWKYASIGELFGIVKAVTTSTAIVIILIYTIPL--SYLPRSVYIMSWVFMII  117
            Y   LYHR W YAS++EL +++KAVT+S  + ++L+  +    ++L   +Y+++W+  ++
Sbjct  60   YVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLR--LYFITWMMHLL  117

Query  118  FIGssrlswrllrDLIIKESNKKAKRTLIIGAGDAGAMVARELNNNQSLNLLPVGFVDDS  177
            +IG+SRL WR+ R  +I ++  K K TL++GAG++G+++ RE+  +Q + + PV  VDD 
Sbjct  118  LIGGSRLFWRVYRRYFIDNAVEK-KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDD  176

Query  178  PLKQKLSIFG-IPVLGSREQIPFLTASHGIEEIIIAMPSAEGRTIREIVNICQATGVRLR  236
              KQK++I   + V G  E+IP L     I  IIIA+P+   + + EI +IC+  GV L 
Sbjct  177  KNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELF  236

Query  237  IFEGTDDLLHSR---SKIRDVQLEDLLRREPVKLDLEEIAAYLQGKTVLISGAGGSIGSE  293
                 +D+L +    ++++ V++EDLL R+PV LD+  I+  L  KT+L++GAGGSIGSE
Sbjct  237  KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSE  296

Query  294  LCRQVCRHRPQRLILLECSENNLFDIDNELRESFPEQ-ALEAELADVRNREKLQAVFEKY  352
            +CRQV +  PQ++ILL  +EN+++ I++EL  ++ ++  + + +ADV+N+ ++  V + +
Sbjct  297  ICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEF  356

Query  353  FPQVIFHAAAFKHVPMMEMHPEEALNNNVLGTRNIAEMADKYGSETFILISTDKAVNPTN  412
             P  ++HAAA KHVP+ME +P+EA+ NN+LGT+N+AE A       F++ISTDKAVNP+N
Sbjct  357  KPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSN  416

Query  413  VMGASKRIAELIVKDINR-SSQTRFAAVRFGNVLGSRGSVVPIFLKQIQKGGPLTVTHPD  471
            VMGA+KRIAE++++ +N  +S+T F AVRFGNVLGSRGSV+P+F +QI+ GGP+TVTHP+
Sbjct  417  VMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPE  476

Query  472  MTRYFMTIPEAVELVIQAGAIARGGEIFVLDMGEPVKIADLANDLIRLSGYDPELDIEIK  531
            MTRYFMTIPEA  LV+QAGA+A+GGE+FVLDMG PVKI DLA++LIRLSG   E DI I 
Sbjct  477  MTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIGIE  535

Query  532  YTGIRPGEKLYEELFSGYEEMAATRHQRIF  561
            ++GIRPGEKLYEEL++  E  +    ++I+
Sbjct  536  FSGIRPGEKLYEELLNKNEIHPQQVYEKIY  565

201) Thexy_1791 in NC_015555


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  348 bits (1308),  Expect = 4e-97, Method: Compositional matrix adjust.
 Identities = 249/559 (45%), Positives = 393/559 (71%), Gaps = 22/559 (3%)

Query  21   AFFMAFFLRFDYHVVEPYFTLYRQSFIIFTLANIST----FIF-FKQYHKIWRYVNLKDL  75
            +F+++F + ++Y ++EPYF  Y   +++++   +      F + F+ YH+ W Y ++ +L
Sbjct  18   SFIVTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEYASVSEL  77

Query  76   IDLMVVITMGSAVSSLILFLLQIHLP-RSIYPlswllniiliissRMFYR----YIMSNS  130
            + ++  +T +  V+ L++ LL  + P   +Y ++W+++++LI +SR+F R    Y++ N+
Sbjct  78   MSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLFWRVYRRYFIDNA  137

Query  131  KVKIKNIVFKNTLIIGAGSAGQMLIRELRAHPEIGLKPVAILDDDKSKIYRSM-EGVPIV  189
              K      K TL++GAG +G +LIRE+    ++ ++PV  +DDDK+K   ++ E V + 
Sbjct  138  VEK------KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQ  191

Query  190  GTLDDIIKAVKENEIDEVIYAIPSASRTVLRKVIDSLSELH-MKVKTLPGIYELVNGKVS  248
            G ++DI   VK   I  +I AIP+ S+  L   I+ + +++ + +  +P I ++++G + 
Sbjct  192  GYVEDIPELVKKFRIKKIIIAIPTLSQKRLNE-INKICNIEGVELFKMPNIEDVLSGELE  250

Query  249  VSQLRDVDINDLLGRDPIKIDLDEISSYIKGKRVMVTGGGGSIGSELCRQIAKFNPSHLI  308
            V++L+ V+++DLLGRDP+ +D+  IS  +  K ++VTG+GGSIGSE+CRQ++KF+P  +I
Sbjct  251  VNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKII  310

Query  309  ILDIYENNMYDIQQELLRKYPD-LRMTCLVASIRDEKKLNIIFKEYKPEIVFHAAAHKHV  367
            +L+  EN++Y I+QEL + Y + +    ++A +++  ++  + +E+KP  V+HAAAHKHV
Sbjct  311  LLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHV  370

Query  368  PLMEDSPHEAVKNNVYGTLNLVRCANTYGVKRFVMISTDKAVNPTSVMGATKRICEMIIQ  427
            PLME +PHEA++NN+ GT N+   A+   V +FVMISTDKAVNP++VMGATKRI EM+IQ
Sbjct  371  PLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQ  430

Query  428  SF-DRMSKTEFVAVRFGNVLGSNGSVIPLFKKQIAEGGPVTVTHEDVRRYFMTIPEAVQL  486
            S+ +  SKT FVAVRFGNVLGS GSVIPLFK+QI  GGPVTVTH ++ RYFMTIPEA +L
Sbjct  431  SLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRL  490

Query  487  VIQAGAMAKGGEIFVLDMGEPVKIIDLARDLIRLSGFEPDVDIPIKITGLRPGEKLFEEL  546
            V+QAGA+A+GGE+FVLDMG PVKI+DLA++LIRLSG   + DI I ++G+RPGEKL+EEL
Sbjct  491  VLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIGIEFSGIRPGEKLYEEL  549

Query  547  LMTDDKYTSTKHDKIFIEK  565
            L  ++       +KI+  K
Sbjct  550  LNKNEIHPQQVYEKIYRGK  568

202) Hprae_0363 in NC_017455


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  347 bits (1302),  Expect = 1e-96, Method: Compositional matrix adjust.
 Identities = 243/520 (47%), Positives = 373/520 (72%), Gaps = 19/520 (3%)

Query  59   YFSSLYNKMWQYASMSELYSIFKATLAINTLFVIYLY-------FFRVSFPRSIIAINLM  111
            Y  +LY++ W+YAS+SEL S++KA  +   + ++ +        F+R+ F      I  M
Sbjct  60   YVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYF------ITWM  113

Query  112  TDIFFLGGMRFALRLLKDFLNRNQNNKSKNRVLIIGAGDAAEMIIREMQKHPEIGKRIIG  171
             +++++GG R+  R+ + ++   +N   K+  L++GAG+++ ++IREM +  ++  + + 
Sbjct  114  MHLLLIGGSRLFWRVYRRYFI--DNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVL  171

Query  172  LVDDDPAKQALEIHG-YKVLGKTKKIPQLIEEYDVDEVIIAIPSAEGKTIKRFYELSNKK  230
             VDDD  KQ + I    KV G    IP+L+  + +  +IIAIP+   K ++ +  + N  
Sbjct  172  AVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIE  231

Query  231  NVKVEIVPGVYEILKGDVSLNQIREVKVEDLLRRDQVDLISSEISAYLEAKTILVsgggg  290
             V +  +P + ++L G++ +N+++ V VEDLL RD V+L  + IS  L  KTILV+G+GG
Sbjct  232  GVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGG  291

Query  291  sigsEICRQIAKFNPEQIIILDINENTTYFLERDLKENYPN-LELISIIGSIRDKNKLEK  349
            SIGSEICRQ++KF+P++II+L+  EN+ Y ++++L   Y N +E++++I+ +++K ++  
Sbjct  292  SIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILE  351

Query  350  VFNEYSPDVVFHAAAHKHVPLMETSPEEAVKNNILGTRNLSQTAADFEIDRFVLISTDKA  409
            V NE+ P  V+HAAAHKHVPLME +P+EA++NNILGT+N++++A + E+ +FV+ISTDKA
Sbjct  352  VMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKA  411

Query  410  VNPTNVMGASKRAAEMIIQTINKQ-VKTKFMAVRFGNVLGSQGSVIPLFKKQIAKGGPLT  468
            VNP+NVMGA+KR AEM+IQ++N +  KT F+AVRFGNVLGS+GSVIPLFK+QI  GGP+T
Sbjct  412  VNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVT  471

Query  469  VTHKDITRYFMTIPEASQLVIQAGALGKGGEVFVLDMGEPVKIMELAEDLIALSGLTPYE  528
            VTH ++TRYFMTIPEAS+LV+QAGAL++GGEVFVLDMG PVKI++LA +LI LSG    E
Sbjct  472  VTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKE-E  530

Query  529  DIDIDVIGLRPGEKLYEELLCDTEDNIATEHERIFINNLG  568
            DI+I+  G+RPGEKLYEELL   E +     E+I+  +++
Sbjct  531  DIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVD  570

203) Clocl_4185 in NC_016627


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  346 bits (1298),  Expect = 2e-96, Method: Compositional matrix adjust.
 Identities = 244/545 (45%), Positives = 392/545 (72%), Gaps = 16/545 (2%)

Query  4    RIRTNALIIFDIVLINFSLILAYLLRFDFSYKNIPVWHSQFIVRLLIVSSIVKIITFIAF  63
            ++R   LII+D  ++ FS++L+Y + ++  +K  ++    +++  +I+     I++++ F
Sbjct  7    KLRFLILIIIDSFIVTFSVFLGYAI-LEPYFKGYSI--DLLVLSSVILLVSHHIFAYV-F  62

Query  64   KLYNSLWKYAGIYEMGLIVGASFVSNSIMISYAFLSKTRVPRSIFPICMLT---DIFFIA  120
            +LY+  W YA++ E+  ++ A  V++SI+++  ++S      +++ +  +T   ++++I+
Sbjct  63   NLYHRAWEYASVSELMSVLKA--VTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIG  120

Query  121  SVRFAYRIFRRVVKGEIIRIKNSKRVLIFGAGEAGAIIVKEMKIHPELKSTPVAIIDDDI  180
            + R+  R++RR   ++ +   + K  L+ GAG++G+++++EM    +++  PV  +DDD 
Sbjct  121  GSRLFWRVYRRYFIDNAV---EKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDK  177

Query  181  FKQGKKING-VPIVGQRKDIATVVEKKQIDEIIIAVPSASRKDINEIFAECSKTQCKVKI  239
             KQ   I   V + G   DI+ +V K +I  IIIA+P+ S+K +NEI   C+     +  
Sbjct  178  NKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFK  237

Query  240  LPSVSQLIDESVVMQKVRNVNIEDLLGREPVNLDVNEVASYIKGQVVLVTGGGGSIGSEL  299
            +P++ +++   + ++++++V++EDLLGR+PV+LD+  ++  +  + +LVTG+GGSIGSE+
Sbjct  238  MPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEI  297

Query  300  CRQIAEFEPKKLIILDNYENNAYDIQNELLHN-KPGLELCTIIANIREKQRMESIFRMYK  358
            CRQ++ F+P+K+I+L++ EN+ Y I++EL       +E+  +IA++++K R+  +   +K
Sbjct  298  CRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFK  357

Query  359  PDVVFHAAAHKHVPLMEANPTEAIKNNVFGTLNVAECADKYGVKRFVLISTDKAVNPTNI  418
            P  V+HAAAHKHVPLME NP EAI+NN++GT NVAE A    V +FV+ISTDKAVNP+N+
Sbjct  358  PYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNV  417

Query  419  MGATKRIAEMIIQALNR-NSKTEFVAVRFGNVLGSNGSVVPLFKKQIEQGGPVTVTHPEV  477
            MGATKRIAEM+IQ+LN  NSKT FVAVRFGNVLGS GSV+PLFK+QIE GGPVTVTHPE+
Sbjct  418  MGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEM  477

Query  478  TRFFMTIPEAVQLVIQAGAMAKGGEIFVLDMGEPVKIVDLARNLIKLSGYEPDIDINIEY  537
            TR+FMTIPEA +LV+QAGA+A+GGE+FVLDMG PVKIVDLA+NLI+LSG   + DI IE+
Sbjct  478  TRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIGIEF  536

Query  538  TGLRP  542
            +G+RP
Sbjct  537  SGIRP  541

204) Dsui_0400 in NC_016616


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  344 bits (1290),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 220/463 (48%), Positives = 344/463 (75%), Gaps = 11/463 (2%)

Query  125  ILLILAMGGGRFLYRAWKD-RCLYGHLALSGESVLILGAGEVGERLIRELQRSPQWRVAG  183
            ++ +L +GG+R++   W+  R  + + A+   + L++GAG+ G  LIRE+ RS + R+  
Sbjct  113  MMHLLLIGGSRLF---WRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQP  169

Query  184  LL--DNDPAKHGREVHG-VKIRGDIASMVHWAKELEVGHVIVAMPSVSAAVRRGAMEQAV  240
            +L  D+D  K+   +   VK++G +  + +  K + +  +I+A+P++S   R   +++  
Sbjct  170  VLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQK-RLNEINKIC  228

Query  241  Q-AGLKVLTVPALDDLLSGRVSLSQIRQVELEDILGREPVQLDDAGLSRLIAERTILVTG  299
            +  G+ ++ +P ++D+LSG + ++++++VE+ED+LGR+PV+LD A +SR ++++TILVTG
Sbjct  229  NIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTG  288

Query  300  AGGSIGSELARQIARFAPRQLVLFEVSEFALYQIEQEFRRTFPG-LDVVCVVGDVKDEAR  358
            AGGSIGSE+ RQ+++F P++++L+  +E ++Y I+QE+ +T+   ++ V V++DV++ +R
Sbjct  289  AGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTR  348

Query  359  LQQVFAAYRPALVFHAAAYKHVPLMESANAWEAVRNNVLGTWRVAMAARQAGVEKMVLIS  418
            + +V   ++P  V+HAAA KHVPLME  N+ EA+RNN+LGT  VA +A+++ V K V+IS
Sbjct  349  ILEVMNEFKPYAVYHAAAHKHVPLMEY-NPHEAIRNNILGTKNVAESAKEGEVSKFVMIS  407

Query  419  TDKAVNPTNVMGTTKRMAERVVQSLEQAGGGTQFIVVRFGNVLGSNGSVIPTFREQIARG  478
            TDKAVNP+NVMG+TKR+AE V+QSL++  + T F+ VRFGNVLGS GSVIP F++QI  G
Sbjct  408  TDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESG  467

Query  479  GPVTVTHPDIIRYFMLIPEAAQLVLQAGLMGNGGEIFVLDMGEPVKIVDLARDLIRLSGF  538
            GPVTVTHP++ RYFM IPEA++LVLQAG +++GGE+FVLDMG PVKIVDLA++LIRLSG 
Sbjct  468  GPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGK  527

Query  539  TEEEIPIEFTGLRPGEKLYEELLADNEMTLPTPHAKLRVAKAE  581
             EE+I IEF+G+RPGEKLYEELL  NE+       K+  +K +
Sbjct  528  KEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVD  570

205) capD in NC_021036


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  344 bits (1293),  Expect = 6e-96, Method: Compositional matrix adjust.
 Identities = 243/518 (47%), Positives = 375/518 (73%), Gaps = 15/518 (2%)

Query  56   HFFACRFLRLHRGIWVFATLRDIYRTIQVAGISlltlllYRALVYHESSLIPRSIYI--L  113
            H+FA  F   HR+ W +A++ ++   ++    S++  LL  +L+  ES+++ R  +I  +
Sbjct  56   HIFAYVFNLYHRA-WEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFL-RLYFITWM  113

Query  114  YPLLLVCIMGGARFLWRAVNDRRNFFAPQSNAKPVIIlgagdaglllMRELDRSNQWKVV  173
              LLL+   GG+R++WR    RR F+    + K+ +++GAG++G +L+RE+ RS++ ++ 
Sbjct  114  MHLLLI---GGSRLFWRVY--RRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQ  168

Query  174  AFL--DDDPRKHGLEVNGR-RVIGNTSELAKPLRDYGVKHVIIAMPYAAREVLHKVTTIA  230
            + L  DDD  K+ + +  R +V G   +++  ++ + +K +IIA+P  ++  L+ +  I 
Sbjct  169  PVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKIC  228

Query  231  LAEGAGIYTVPNLEDLMSGRVSINAMRPVNIEDLLGRDTVQLDTNNISELIQNKTILVTG  290
              EG  ++ +PN+ED++SG + +N ++ V++EDLLGRD V+LD   IS  + NKTILVTG
Sbjct  229  NIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTG  288

Query  291  AGGSIGSELCRQIFKYNPKSIVLVEISEFALYEIHQWFSSK-NTAVRVIPLTADVKNTSR  349
            AGGSIGSE+CRQ+ K++P+ I+L+  +E ++Y IHQ +S      +  +P+ ADV+N +R
Sbjct  289  AGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTR  348

Query  350  MREIISNYKPDIIFHAAAYKHVPLMEVYNAWEAVRNNSFGTYNVAKIAVENGVKNFILIS  409
            + E+++++KP  ++HAAA KHVPLME YN+ EA+RNN +GT NVA  A E  V +F++IS
Sbjct  349  ILEVMNEFKPYAVYHAAAHKHVPLME-YNPHEAIRNNILGTKNVAESAKEGEVSKFVMIS  407

Query  410  TDKAVNPTNVMGASKRLAEMLLERMQTFHGDTTTFNMVRFGNVLGSTGSVIPKFKSQIEK  469
            TDKAVNP+NVMGA+KR+AEM+++ ++  +   T+F  VRFGNVLGS GSVIP FK+QIE 
Sbjct  408  TDKAVNPSNVMGATKRIAEMVIQSLNE-DNSKTSFVAVRFGNVLGSRGSVIPLFKNQIES  466

Query  470  GGPVTVTHPEITRYFMSIPEAAQLVIQAASMGRGGEIFVLDMGEPVKIVDLAKNMIKLSG  529
            GGPVTVTHPE+TRYFM+IPEA++LV+QA+++++GGE+FVLDMG PVKIVDLAKN+I+LSG
Sbjct  467  GGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG  526

Query  530  YSEDEISIEFTGLRPGEKLYEELMADEENTSSTTHGKL  567
              E++I+IEF+G+RPGEKLYEEL+  +E  +     K+
Sbjct  527  KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKI  564

206) capD in NC_018108


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  344 bits (1293),  Expect = 6e-96, Method: Compositional matrix adjust.
 Identities = 243/518 (47%), Positives = 375/518 (73%), Gaps = 15/518 (2%)

Query  56   HFFACRFLRLHRGIWVFATLRDIYRTIQVAGISlltlllYRALVYHESSLIPRSIYI--L  113
            H+FA  F   HR+ W +A++ ++   ++    S++  LL  +L+  ES+++ R  +I  +
Sbjct  56   HIFAYVFNLYHRA-WEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFL-RLYFITWM  113

Query  114  YPLLLVCIMGGARFLWRAVNDRRNFFAPQSNAKPVIIlgagdaglllMRELDRSNQWKVV  173
              LLL+   GG+R++WR    RR F+    + K+ +++GAG++G +L+RE+ RS++ ++ 
Sbjct  114  MHLLLI---GGSRLFWRVY--RRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQ  168

Query  174  AFL--DDDPRKHGLEVNGR-RVIGNTSELAKPLRDYGVKHVIIAMPYAAREVLHKVTTIA  230
            + L  DDD  K+ + +  R +V G   +++  ++ + +K +IIA+P  ++  L+ +  I 
Sbjct  169  PVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKIC  228

Query  231  LAEGAGIYTVPNLEDLMSGRVSINAMRPVNIEDLLGRDTVQLDTNNISELIQNKTILVTG  290
              EG  ++ +PN+ED++SG + +N ++ V++EDLLGRD V+LD   IS  + NKTILVTG
Sbjct  229  NIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTG  288

Query  291  AGGSIGSELCRQIFKYNPKSIVLVEISEFALYEIHQWFSSK-NTAVRVIPLTADVKNTSR  349
            AGGSIGSE+CRQ+ K++P+ I+L+  +E ++Y IHQ +S      +  +P+ ADV+N +R
Sbjct  289  AGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTR  348

Query  350  MREIISNYKPDIIFHAAAYKHVPLMEVYNAWEAVRNNSFGTYNVAKIAVENGVKNFILIS  409
            + E+++++KP  ++HAAA KHVPLME YN+ EA+RNN +GT NVA  A E  V +F++IS
Sbjct  349  ILEVMNEFKPYAVYHAAAHKHVPLME-YNPHEAIRNNILGTKNVAESAKEGEVSKFVMIS  407

Query  410  TDKAVNPTNVMGASKRLAEMLLERMQTFHGDTTTFNMVRFGNVLGSTGSVIPKFKSQIEK  469
            TDKAVNP+NVMGA+KR+AEM+++ ++  +   T+F  VRFGNVLGS GSVIP FK+QIE 
Sbjct  408  TDKAVNPSNVMGATKRIAEMVIQSLNE-DNSKTSFVAVRFGNVLGSRGSVIPLFKNQIES  466

Query  470  GGPVTVTHPEITRYFMSIPEAAQLVIQAASMGRGGEIFVLDMGEPVKIVDLAKNMIKLSG  529
            GGPVTVTHPE+TRYFM+IPEA++LV+QA+++++GGE+FVLDMG PVKIVDLAKN+I+LSG
Sbjct  467  GGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG  526

Query  530  YSEDEISIEFTGLRPGEKLYEELMADEENTSSTTHGKL  567
              E++I+IEF+G+RPGEKLYEEL+  +E  +     K+
Sbjct  527  KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKI  564

207) TEQUI_1023 in NC_014914


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  343 bits (1287),  Expect = 2e-95, Method: Compositional matrix adjust.
 Identities = 242/518 (47%), Positives = 375/518 (73%), Gaps = 15/518 (2%)

Query  56   HFFACRFLRLHRGIWVFATLRDIYRTIQVAGISlltlllYRALVYHESSLIPRSIYI--L  113
            H+FA  F   HR+ W +A++ ++   ++    S++  LL  +L+  ES+++ R  +I  +
Sbjct  56   HIFAYVFNLYHRA-WEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFL-RLYFITWM  113

Query  114  YPLLLVCIMGGARFLWRAVNDRRNFFAPQSNAKPVIIlgagdaglllMRELDRSNQWKVV  173
              LLL+   GG+R++WR    RR F+    + K+ +++GAG++G +L+RE+ RS++ ++ 
Sbjct  114  MHLLLI---GGSRLFWRVY--RRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQ  168

Query  174  AFL--DDDPRKHGLEVNGR-RVIGNTSELAKPLRDYGVKHVIIAMPYAAREVLHKVTTIA  230
            + L  DDD  K+ + +  R +V G   +++  ++ + +K +IIA+P  ++  L+ +  I 
Sbjct  169  PVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKIC  228

Query  231  LAEGAGIYTVPNLEDLMSGRVSINAMRPVNIEDLLGRDTVQLDTNNISELIQNKTILVTG  290
              EG  ++ +PN+ED++SG + +N ++ V++EDLLGRD V+LD   IS  + NKTILVTG
Sbjct  229  NIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTG  288

Query  291  AGGSIGSELCRQIFKYNPKSIVLVEISEFALYEIHQWFSSK-NTAVRVIPLTADVKNTSR  349
            AGGSIGSE+CRQ+ K++P+ I+L+  +E ++Y IHQ +S      +  +P+ ADV+N +R
Sbjct  289  AGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTR  348

Query  350  MREIISNYNPDIIFHAAAYKHVPLMEVYNAWEAVRNNSFGTYNVAKIAVENGVKNFILIS  409
            + E++++++P  ++HAAA KHVPLME YN+ EA+RNN +GT NVA  A E  V +F++IS
Sbjct  349  ILEVMNEFKPYAVYHAAAHKHVPLME-YNPHEAIRNNILGTKNVAESAKEGEVSKFVMIS  407

Query  410  TDKAVNPTNVMGASKRLAEMLLERMQTFHGDTTTFNMVRFGNVLGSTGSVIPKFKSQIEK  469
            TDKAVNP+NVMGA+KR+AEM+++ ++  +   T+F  VRFGNVLGS GSVIP FK+QIE 
Sbjct  408  TDKAVNPSNVMGATKRIAEMVIQSLNE-DNSKTSFVAVRFGNVLGSRGSVIPLFKNQIES  466

Query  470  GGPVTVTHPEITRYFMSIPEAAQLVIQAASMGRGGEIFVLDMGEPVKIVDLAKNMIKLSG  529
            GGPVTVTHPE+TRYFM+IPEA++LV+QA+++++GGE+FVLDMG PVKIVDLAKN+I+LSG
Sbjct  467  GGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG  526

Query  530  YSEDEISIEFTGLRPGEKLYEELMADEENTSSTTHGKL  567
              E++I+IEF+G+RPGEKLYEEL+  +E  +     K+
Sbjct  527  KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKI  564

208) Trad_0100 in NC_014221


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  343 bits (1286),  Expect = 2e-95, Method: Compositional matrix adjust.
 Identities = 244/533 (46%), Positives = 375/533 (71%), Gaps = 15/533 (2%)

Query  83   FGLYQRSWTKVAFRELGDIVRAVigaaalgslillwlgpsldiPRSVAFLDGLVTLFLMT  142
            F LY+R+W   +  EL  +++AV ++  +  L++  L +   + R + F+  ++ L+L+ 
Sbjct  62   FNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLR-LYFITWMMHLLLIG  120

Query  143  GMRAFAR-YRHEASLGQHSARRAKSVLVIGAGEAGSLVVREMLRHPEMGLRPVGFLDDDR  201
            G R F R YR+   + +++  + K+ LV+GAG++GS+++REMLR  +M ++PV  +DDD+
Sbjct  121  GSRLFWRVYRR--YFIDNAVEK-KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDK  177

Query  202  KKVGYRIAT-VPVLGTTQDINKVVRSHDVDEVLIAIPSSDGRVVREI--VGRIEGAKAGL  258
            +K    I+  V V G  +DI  +V+   +  ++IAIP+   + + EI  +  IEG     
Sbjct  178  NKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVEL--  235

Query  259  KYRIIPGVYELLSGQVGISRIREVQIEDLLRRPPVELDTAAISSYLTDRVVMITGAGGSI  318
             +++ P + ++LSG++ ++ ++ V++EDLL R PVELD A IS  LT++ +++TGAGGSI
Sbjct  236  -FKM-PNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSI  293

Query  319  GSELVRQICRFRPKELILFGRGENSIYTLERELERDWPD-IPYHSVIAGVQHIVRLDYVF  377
            GSE+ RQ+ +F P+ +IL+G+GENSIY++++EL +   + I + +VIA+VQ+  R+  V 
Sbjct  294  GSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVM  353

Query  378  RRYQPEVVFHAAAHKHVPLMELNPEEAVFNNIIGSKNLVTLALKYGVTHFVNISTDKAVN  437
              ++P  V+HAAAHKHVPLME NP+EA+ NNI+G+KN+   A    V+ FV ISTDKAVN
Sbjct  354  NEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVN  413

Query  438  PTSVMGASKRMVERLVQSAALRASPEQTFVSVRFGNVLGSRGSVIPVFKQQILAGGPVTV  497
            P++VMGA+KR+ E ++QS     ++  +FV+VRFGNVLGSRGSVIP+FK+QI +GGPVTV
Sbjct  414  PSNVMGATKRIAEMVIQSLN-EDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTV  472

Query  498  THPDMTRYFMTIPEASQLVLQAAGQGKNGEIYILDMGEPVRIVDLARDLIKLSGFEPDVD  557
            THP+MTRYFMTIPEAS+LVLQA++ ++ GE+++LDMG PV+IVDLA++LI+LSG   + D
Sbjct  473  THPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEED  531

Query  558  IPIAFSGVRPGEKLYEELMTDEERGDATAHEKIFVAKPSPLDQGALERTVQTL  610
            I I FSG+RPGEKLYEEL+  +E       EKI+ +K     +  ++  V+ L
Sbjct  532  IGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDL  584

209) Cal6303_1093 in NC_019751


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  341 bits (1279),  Expect = 8e-95, Method: Compositional matrix adjust.
 Identities = 247/550 (45%), Positives = 382/550 (70%), Gaps = 22/550 (4%)

Query  82   LGFYRRYWRYASIEELVYVIVLTASAVVVQAIVFDILDSTVPFTVDELPQSLPFIDGLLS  141
            + +Y+R W YAS+ EL+ V+   +S++VV  ++  +L S  PF        L FI  ++ 
Sbjct  62   FNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFL------RLYFITWMMH  115

Query  142  CVFIGGLRFSFRVTERIKQRRSVFNPQQPVLIIGAGSAGISLVEDMQRSPQLGLRPVAFI  201
             ++IGG R+  RV  R     +V   +++ L++GAG +G  L+ +M RS ++ ++PV  +
Sbjct  116  LLLIGGSRLFWRVYRRYFIDNAV--EKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAV  173

Query  202  DDDPQKLNLRIRGIPVVGGC-DRIPEIVQIMGIHRVIIAMPTVAGQVIREIVDICQATGI  260
            DDD +K ++ I     V G  + IPE+V+   I ++IIA+PT++ + + EI  IC+  G+
Sbjct  174  DDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGV  233

Query  261  HTSTLPGIHEILNGRVRVESIRDVRIEDLLRREPVQTDVHQVSQFIKGKKVLITGAGGSI  320
            +   +P I+++L+G + V++++ V +EDLL R+PV+ D+  +S+ +  K +L+TGAGGSI
Sbjct  234  ELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSI  293

Query  321  GSELSRQILKCQPSQIILLGHGENSIFNIqqelqqvvqvlKHDGKVQGHTPDILTFIADI  380
            GSE+ RQ+ K +P +IILLGHGENSI++I+QEL          +K  G+  +++  IAD+
Sbjct  294  GSEICRQVSKFDPQKIILLGHGENSIYSIHQEL----------SKTYGNRIEFVPVIADV  343

Query  381  RFRDRLKHAFEKFQPDVVFHAAAHKHVPLMETNPGEAITNNVIGTQNLVTLALQYNVNHF  440
            + + R+ +  + F+P  V+HAAAHKHVPLME NP EAI NN++GT+N+   A + +V+ F
Sbjct  344  QNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKF  403

Query  441  VMISTDKAVNPTNVMGASKRVAEMLVLEAAKQSGK-AYVAVRFGNVLGSRGSVVPTFKQQ  499
            VMISTDKAVNP+NVMGA+KR+AEM++     +++K ++VAVRFGNVLGSRGSV+P FK+Q
Sbjct  404  VMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQ  463

Query  500  IAAGGPITVTHPDICRYFMTIPEAVQLVLQAAVLGRGGEVLMLNMGEPVKIVDLAEELIR  559
            I +GGP+TVTHP++ RYFMTIPEA +LVLQA+ L++GGEV++L+MG PVKIVDLA +LIR
Sbjct  464  IESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIR  523

Query  560  LSGYEVNKDIEIKFTGLRPGEKLFEELFIEGEEYDPTEHEKLFMVRNASRIIPRNLGITV  619
            LSG   + DI I F+G+RPGEKL+EEL+   E       EK++  +   + I  ++++ V
Sbjct  524  LSG-KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGK-VDHYIKTEVDLIV  581

Query  620  DALCQSATKN  629
            + L ++ +K+
Sbjct  582  EDLINNFSKE  591

210) Deipe_0919 in NC_019793


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  340 bits (1276),  Expect = 1e-94, Method: Compositional matrix adjust.
 Identities = 224/439 (52%), Positives = 327/439 (75%), Gaps = 9/439 (2%)

Query  138  LIVGAGEAGIMIAREMLRHPEAGLVPVAFVDDRLDKQRRTFVG-LPVLGTVDMLADVVQR  196
            L+VGAG++G ++ REMLR  +  + PV  VDD  +KQ+ T+   + V G V+ ++++V++
Sbjct  144  LVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKK  203

Query  197  CKADEVLIAVPSAAGQFVRRVVDLARTAGVRYRIMPGMFEILSGQVDIAQIRNVNVEDLL  256
             +   ++IA+P+ + + +  +  +    GV    MP + ++LSG++++ ++++V+VEDLL
Sbjct  204  FRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLL  263

Query  257  RRDPVQLDTESIAGYLREQVVLVTGAGGSIGSEIVRQIARFVPRKIVLLGRGENSVFSIQ  316
             RDPV+LD   I+  L ++ +LVTGAGGSIGSEI RQ+++F P+KI+LLG+GENS++SI+
Sbjct  264  GRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIH  323

Query  317  QELLRDWPE-VQCVALIGDVRDATRLRAIFQEQRPSVVFHAAAHKHVPLMEDSPSEAILN  375
            QEL +   + ++ V++I+DV++ TR+  + +E +P  V+HAAAHKHVPLME +P EAI N
Sbjct  324  QELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRN  383

Query  376  NIVGTRNIAELCLEFQVARLVNISTDKAVNPTSVMGATKRIAEMVISTAAQRARPEQSFV  435
            NI+GT+N+AE   E +V+++V ISTDKAVNP++VMGATKRIAEMVI +  +   +  SFV
Sbjct  384  NILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNE-DNSKTSFV  442

Query  436  SVRFGNVLGSRGSVIPTFLTQIRAGGPVTVTHPEMRRYFMTIPEAARLVLQAGGLAQNGN  495
            +VRFGNVLGSRGSVIP F  QI +GGPVTVTHPEM RYFMTIPEA+RLVLQAG+LAQ G+
Sbjct  443  AVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGE  502

Query  496  VYVLDMGEPVKIADLAQDVIRLSGAR--NIEVVFTGVRPGEKLYEELLTTGENVGATSHR  553
            V+VLDMG PVKI DLA+++IRLSG +  +I + F+G+RPGEKLYEELL   E        
Sbjct  503  VFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYE  562

Query  554  DIFVAQLERLDPSYVTARV  572
             I+ +++++    Y+ + V
Sbjct  563  KIYRGKVDH----YIKTEV  577

211) Vpar_0669 in NC_013520


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  340 bits (1276),  Expect = 1e-94, Method: Compositional matrix adjust.
 Identities = 250/515 (49%), Positives = 369/515 (72%), Gaps = 8/515 (1%)

Query  59   IMHLYTRIWRYAGMREVLAVFVATTIGTALFYSSMFVFGKSLP-RSIYFITWFLTTGAVG  117
            + +LY R W YA++ E+++V+ A T +  +    + ++    P   +YFITW +    +G
Sbjct  61   VFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIG  120

Query  118  MGRMLLHYVALHYSSGDDGESGQVNTLiigagdagatiaREIERYHKRSRRVIGYVDDDM  177
             +R++ + V  +Y  ++  E     TL++GAG++G+ + RE+ R +    + +  VDDD 
Sbjct  121  GSRLFWR-VYRRYFIDNAVEKK--ATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDK  177

Query  178  FKHNRLMNG-FRILGNREDIPALVAKYKVEEIIIAMPSVKRDIIQEIMEICSPLKCKINI  236
             K++  +    ++ G  EDIP LV K+++  IIIA+P++ +  ++EI  IC+     +  
Sbjct  178  NKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFK  237

Query  237  LPGMYQLLDDEVLVSHLHPVSIEDLLERDEIQLDTSKVETYLKDKVVLVTGAGGSIGSEI  296
            +P + ++L +E+ V++L  V +EDLL RD ++LD + +   L +K +LVTGAGGSIGSEI
Sbjct  238  MPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEI  297

Query  297  CRQVLRVkpkkllllGHGENSIYLIHQEL-RSIAPEGTLVPIIADIRDKNQLEQIFKNYN  355
            CRQV +  P+K++LLGHGENSIY IHQEL ++ +    +VP+IAD+++K ++ ++ ++++
Sbjct  298  CRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFK  357

Query  356  PDVVFHAAAHKHVPLMEIQPIAAVLNNIYGTRNVADVAGAHGVDRFVMISTDKAVNPTSV  415
            P  V+HAAAHKHVPLME +P  A+ NNI GT+NVA+ A    V +FVMISTDKAVNP++V
Sbjct  358  PYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNV  417

Query  416  MGATKRVAEKVVLGMNHTYD-TKFITVRFGNVLGSRGSVIPLFRKQIEAGAPVTVTDPEM  474
            MGATKR+AE V+ ++N+    T F++VRFGNVLGSRGSVIPLF++QIE+G+PVTVT+PEM
Sbjct  418  MGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEM  477

Query  475  TRYFMTIPEASQLVLQAGAMGNGGEVFLLDMGEPVKIVDLAKNMIRLSGFEPNKDIRIEF  534
            TRYFMTIPEAS+LVLQAGA+++GGEVF+LDMG PVKIVDLAKN+IRLSG   + DI IEF
Sbjct  478  TRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIGIEF  536

Query  535  TGLRPGEKLYEELLTAEEGTNTTTHKKIFEAALED  569
            +G+RPGEKLYEELL  +E        KI+ + +++
Sbjct  537  SGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDH  571

212) Riv7116_0259 in NC_019678


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  340 bits (1277),  Expect = 1e-94, Method: Compositional matrix adjust.
 Identities = 242/562 (44%), Positives = 370/562 (66%), Gaps = 37/562 (6%)

Query  80   YSFGFYRRYWRYAGVEELSYVAMLIVAAMVIQTLLFDVINFTIPWAVDTLPRSLPFLDGL  139
            Y F +Y+R W YA+V EL  V   + +++V+  L            V  L    PFL   
Sbjct  60   YVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLL-----------LVSLLISESPFL---  105

Query  140  LSCIFIGALRFSVRVVERTRHSRLAFTRRFHN---QDERVLIVGAGSAGVSLVQEMQTSS  196
               +++ +    + ++  +R  +  + R F +   +    L+VGAG +G  L++EM  S 
Sbjct  106  --RLYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQ  163

Query  197  DLGFRPVAFIDDDVTKFNARIRG-IHVVGDRHSIPEVLEPLRVDKVIIAMPSVAGEVIRE  255
            D+  +PV  +DDD  K +  I   + V G  + IPE++  +R+ K+IIA+P+++   + E
Sbjct  164  DMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNE  223

Query  256  IVDICKSAGIQACTLPGINEILNGKVSLNSIRDVRIEDLLRREPVQTEIEKVAEFINGKR  315
            I  IC+  G++   +P I+++L+G + +N+++ V +EDLL R+PV+ ++  ++  +  K 
Sbjct  224  INKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKT  283

Query  316  VLITGAGGSIGSELCRQICSCRPKEIMLVGHGENSVFTIQQELNQLVKLLQEDSKASGYA  375
            +L+TGAGGSIGSE+CRQ+    P+ I+L+GHGENS+++I+QEL            +  Y+
Sbjct  284  ILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQEL------------SKTYG  331

Query  376  PRI--LGFIADIRFKDRLRNAFDKFQPDVVFHAAAHKHVPLMELNSPEAITNNVIGTKNL  433
             RI  +  IAD++ K R+ +  + F+P  V+HAAAHKHVPLME N+ EAI NN++GTKN+
Sbjct  332  NRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNV  391

Query  434  VEEALRCNVNHFVMISTDKAVNPTNIMGASKRVAEMVVLQAAKQSGK-SYVAVRFGNVLG  492
             E A   +V+ FVMISTDKAVNP+N+MGA+KR+AEMV+     +++K S+VAVRFGNVLG
Sbjct  392  AESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLG  451

Query  493  SRGSVVPTFKKQIAAGGPITVTHPDICRYFMTIPEAVQLVLQAAVLGRGGEVLMLNMGEP  552
            SRGSV+P FK+QI +GGP+TVTHP++ RYFMTIPEA +LVLQA+ L++GGEV++L+MG P
Sbjct  452  SRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKP  511

Query  553  VKIVDLASELIRLSGYRVNKDIDIVFTGLRPGEKLFEELFIEGEEYDPTEHEKLFMVKNS  612
            VKIVDLA +LIRLSG + + DI+I F+G+RPGEKL+EEL+   E       EK++  K  
Sbjct  512  VKIVDLAKNLIRLSG-KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGK-V  569

Query  613  SRIIPKSLNVSVDALCQAAGKN  634
             + I   +++ V+ L +  +K+
Sbjct  570  DHYIKTEVDLIVEDLINNFSKE  591

213) Dred_3050 in NC_009253


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  340 bits (1275),  Expect = 2e-94, Method: Compositional matrix adjust.
 Identities = 255/519 (50%), Positives = 371/519 (72%), Gaps = 19/519 (3%)

Query  57   YGSKLYHRVWAYASTGEllti-iqsvslvsllffiltHFIDEPHLGKTILSFWAFAIIFV  115
            Y  +LYHR W YAS +EL+++     S + + +++++ +I E+ + +  +  W   ++++
Sbjct  60   YVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLI  119

Query  116  GGSRFAWRLYVEYKAKKGYVRMGTPKRA-LIYGAGSAGALVARE-YKNHYNGNQPVIGFI  173
            GGSR+ WR+Y  Y     ++  +  K+A L+ GAG +G+++ RE  +++    QPV++ +
Sbjct  120  GGSRLFWRVYRRY-----FIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLA-V  173

Query  174  DDDTKKHHLSIYD-LPVLGGRESIPSLICKHNIDEIIIAMPSVAGKSMRDIIQFCKDTVG  232
            DDD +K+ ++I + + V G  E IP L+ K  I  IIIA+P+++ K + +I ++C+    
Sbjct  174  DDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGV  233

Query  233  EVKILPGVYQFLNGNVSISKIRPVEIEDLLGREPVQVDLKEISLYLKGKVVLVTGAGGSI  292
            E+  +P + + L+G++ +++++ VE+EDLLGR+PV++D+  IS  L  K +LVTGAGGSI
Sbjct  234  ELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSI  293

Query  293  GSELCRQIAQMDPAKIILLGHGENSIHKIWLELRDKF----PLVPLEVEIADVRDRFKLQ  348
            GSE+CRQ+++ DP KIILLGHGENSI  I  EL   +     +VP+   IADV+++ ++ 
Sbjct  294  GSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPV---IADVQNKTRIL  350

Query  349  LTFEKHQPhvvfhaaahkhvPLMEMHPDEAVKTNVFGTKNVAEMADRVGCERFVLISTDK  408
               +  +P  V+HAAAHKHVPLME +P+EA++ N++GTKNVAE A      +FV+ISTDK
Sbjct  351  EVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDK  410

Query  409  AVNPSSVMGATKRIAELVIQNLF-KGSHTKFAAVRFGNVLGSRGSVVPIFKEQIARGGPV  467
            AVNPS+VMGATKRIAE+VIQ+L    S T F AVRFGNVLGSRGSV+P+FK+QI  GGPV
Sbjct  411  AVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPV  470

Query  468  TVTHPDMTRYFMTIPEAVQLVIQAGAMAEGGEVFLLDMGEPVKIVDLAANLIKLSGFEPG  527
            TVTHP+MTRYFMTIPEA +LV+QAGA+A+GGEVF+LDMG PVKIVDLA NLI+LSG    
Sbjct  471  TVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKE  529

Query  528  KDIEIKYTGIRPGEKLFEELLTAEEGSSSTKHKRIFEAK  566
             DI I ++GIRPGEKL+EELL  +E  +     +I+ +K
Sbjct  530  EDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGK  568

214) TTE0668 in NC_003869


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  340 bits (1275),  Expect = 2e-94, Method: Compositional matrix adjust.
 Identities = 231/513 (46%), Positives = 355/513 (70%), Gaps = 18/513 (3%)

Query  63   YNKIWRYASLHDIMDLIIFTTIGSAMAAFVLLFLQIHLPRSIYPLY---WFLSALLIGGS  119
            Y++ W YAS+ ++M   ++ ++ S++   +LL   +    ++  LY   W +  LLIGGS
Sbjct  65   YHRAWEYASVSELMS--VLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGS  122

Query  120  RI---AYRSYMENSSkvkvknikykkvlivGAGDAGRILVREIKNHPETGLKPVAIVDDD  176
            R+    YR Y  +++  K   +        GAG++G +L+RE+    +  ++PV  VDDD
Sbjct  123  RLFWRVYRRYFIDNAVEKKATLVV------GAGQGGSVLIREMLRSQDMRMQPVLAVDDD  176

Query  177  VSKLHRSIDD-VPVVGKIDDIQEVITEKEIDEVIFAIPSAPRTVLKKVIDKCSEMRIKVK  235
             +K   +I + V V G ++DI E++    I  +I+AIP+ ++  L+ +   C+   + + 
Sbjct  177  KNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELF  236

Query  236  TLPAIYELVDGTISISSIRDVDINDLLGREPVKIDLEEISSYIkgkkvmvtggggSIGSE  295
             +P I +++ G + +++++ V+++DLLGR+PV +D+  IS  +  K ++VTG+GGSIGSE
Sbjct  237  KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSE  296

Query  296  LCRQIARFSPSRLIILDIYENNMYEVEQELKRKYPE-LDVICLVANIREEKKINKIFSEY  354
            +CRQ+++F P ++I+L+  EN++Y ++QEL + Y + ++ + ++A++++  +I  + +E+
Sbjct  297  ICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEF  356

Query  355  TPDIVFHAAAHKHVPLMEVSPHEAIKNNVYGTLNLVKVSDLYNVNRFVMISTDKAVNPTS  414
             P  V+HAAAHKHVPLME +PHEAI+NN+ GT N+   +   +V++FVMISTDKAVNP++
Sbjct  357  KPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSN  416

Query  415  VMGASKRICEMIIQEY-DKKSKTEFVAVRFGNVLGSNGSVIPLFKKQIAEGGPVTVTHEE  473
            VMGA+KRI EM+IQ   + +SKT FVAVRFGNVLGS GSVIPLFK+QI  GGPVTVTH E
Sbjct  417  VMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPE  476

Query  474  IKRYFMTIPEAVQLVIQAGAMAKGGEIFVLDMGEPVKIIDLARTLIRLSGFEPDVDIPIK  533
            + RYFMTIPEA +LV+QAGA+A+GGE+FVLDMG PVKI+DLA+ LIRLSG   + DI I 
Sbjct  477  MTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIGIE  535

Query  534  IIGLRPGEKLFEELLISDDKYVSTKHEKIFIEK  566
            + G+RPGEKL+EELL  ++       EKI+  K
Sbjct  536  FSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGK  568

215) bpr_I2544 in NC_014387


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  340 bits (1278),  Expect = 9e-95, Method: Compositional matrix adjust.
 Identities = 234/508 (47%), Positives = 352/508 (70%), Gaps = 24/508 (4%)

Query  70   YIFKLYDSLWAYAGEREMQNLVMACVISGVINAIGLQFFKSQSQPVPQSYYFLYTFILIS  129
            Y+F+LY+  W YA+  E+ + V+  V S+++ ++ L  +     P  + Y++     L+ 
Sbjct  60   YVFNLYHRAWEYASVSELMS-VLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLL-  117

Query  130  LIFVSRFSYRFLRSQKHRAENRNNSKAVMVIGAGEAANIIIKDIITSNYSTMSIKCIIDD  189
            LI  SR+  R  R  +   +N  + KA +V+GAG++++++I++++ S+   M ++ ++  
Sbjct  118  LIGGSRLFWRVYR--RYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQ--DMRMQPVLAV  173

Query  190  DPNKWGKYIQGIRVVGGRDRIEECADLYDIDEIIVAI---------PSVSRPELRKILEI  240
            D +K     +    +  R +++   +  DI E++  +         P++S+  L  I  I
Sbjct  174  DDDK----NKQKMTITERVKVQGYVE--DIPELVKKFRIKKIIIAIPTLSQKRLNEINKI  227

Query  241  CKNTNCKLRSLPGMYQLVNGDVNVSRLRDVEVEDLLGRDPIAVDMDQIAGYVAGKVVMVT  300
            C+     L  +P + ++++G+++V+ L+ VEVEDLLGRDP+ +DM  I+  ++ K ++VT
Sbjct  228  CNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVT  287

Query  301  GGGGSIGSELCRQIAGHKPKRLIIVDIYENNAYDIQQELIRKYPE-MDLVVLIASVRNTL  359
            G+GGSIGSE+CRQ++   P+++I+++  EN+ Y I+QEL + Y + +++V +IA V+N  
Sbjct  288  GAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKT  347

Query  360  RINNIFEEYKPDIVYHAAAHKHVPLMETSPGEAIKNNVFGTWKTAMAAAMNGTKKFVLIS  419
            RI ++ +E+KP  VYHAAAHKHVPLME +P EAI+NN++GT + A +A      KFV+IS
Sbjct  348  RILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMIS  407

Query  420  TDKAVNPTNVMGASKRICEMIVQTFN-KHYDTEFVAVRFGNVLGSNGSVIPLFKKQIASG  478
            TDKAVNP+NVMGA+KRI EM++Q++N  +  T FVAVRFGNVLGS GSVIPLFK+QI SG
Sbjct  408  TDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESG  467

Query  479  GPVTVTDPEIIRYFMTITEAVSLVLQAGAYAKGGEIFVLDMGEPVKILDLAENLIKLSGY  538
            GPVTVT+PE+ RYFMTI EA  LVLQAGA A+GGE+FVLDMG PVKI+DLA NLI+LSG 
Sbjct  468  GPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-  526

Query  539  KVGEDIKIEFTGLRPGEKLYEEMLMDEE  566
            K  EDI IEF+G+RPGEKLYEE+L  +E
Sbjct  527  KKEEDIGIEFSGIRPGEKLYEELLNKNE  554

216) Slip_0161 in NC_014220


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  339 bits (1271),  Expect = 4e-94, Method: Compositional matrix adjust.
 Identities = 239/526 (46%), Positives = 367/526 (70%), Gaps = 31/526 (5%)

Query  54   FAY-FKLYRQMWEYASIRELIIIVKAATAGA------------AGSTLCTYLIGWTLLPR  100
            FAY F+LY++ WEYAS+ EL+ ++KA T++              ++ L  Y+I W +   
Sbjct  58   FAYVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMM---  114

Query  101  SVHiiewiitigliglSRMSSRIIRDVgnggssggrsrTLIVGAGDAGMLVARELLSPNS  160
                      + LIG SR+  R+ R     +++  +  TL+VGAG++G ++ RE+L ++ 
Sbjct  115  ---------HLLLIGGSRLFWRVYRR-YFIDNAVEKKATLVVGAGQGGSVLIREMLRSQD  164

Query  161  KATLHPVGFVDDDPGKRGLMFSG-LKVLGDRRDIPRLVERHDVDTILIAMPSVPGRTVRE  219
               ++PV  VDDD  K+ + ++  +KV G   DIP LV +  +  I+IA+P+++ + + E
Sbjct  165  M-RMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNE  223

Query  220  IIDICGQTKASIKVLPGVYELINGrvrvsrirsvsvEDLLRREPVKVDLEGIAGYLKGKV  279
            I  IC      +  +P + ++++G + V+ ++ V VEDLL R+PV +D+  I+  L  K 
Sbjct  224  INKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKT  283

Query  280  VLVTGGAGSIGSELCRQVCSFKPAGLIVLDNSENGLFEIELELRKSYPE-AQIVPCLADV  338
            +LVTG++GSIGSE+CRQV  F P  +I+L+++EN+++ I+ EL K+Y +  ++VP +ADV
Sbjct  284  ILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADV  343

Query  339  KDHAKIETVFSRHRPQVVFHAAAYKHVPMMEVNPDEAVKNNVGGTIVVACAAKNYGAEVF  398
            ++ ++I  V +  +P  V+HAAA KHVP+ME NP+EA++NN+ GT  VA +AK+     F
Sbjct  344  QNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKF  403

Query  399  IYISTDKAVNPTSVMGATKRVGELIVQSMN-GKGKTRFASVRFGNVLGSRGSVVPIFASQ  457
            + ISTDKAVNP++VMGATKR++E+++QS+N +++KT F +VRFGNVLGSRGSV+P+F +Q
Sbjct  404  VMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQ  463

Query  458  IAKGGPVTVTHEDMQRYFMTIPEAVQLVIQAGALAQGGEIFVLDMGEPVKIIDLARDMIR  517
            I  GGPVTVTH +M RYFMTIPEA +LV+QAGALAQGGE+FVLDMG PVKI+DLA+++IR
Sbjct  464  IESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIR  523

Query  518  LSGLRPDVDIKIEITGIRPGEKLCEELLSRKELLDVTRHQRIFIAR  563
            LSG + + DI IE++GIRPGEKL EELL+++E+      ++I+ ++
Sbjct  524  LSG-KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGK  568

217) CD630_27690 in NC_009089


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  338 bits (1269),  Expect = 5e-94, Method: Compositional matrix adjust.
 Identities = 244/533 (46%), Positives = 378/533 (71%), Gaps = 19/533 (3%)

Query  68   HIVSFRLFKCYNTLWRYAGEEEIISIFVATLAYLIPIYIINKLLGFDYPIM-FYVLNTIF  126
            HI ++ +F+ Y+  W YA+  E++S++ A  + ++   ++  LL  + P++ +Y +  + 
Sbjct  56   HIFAY-VFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMM  114

Query  127  IIMFTSGARIAYRAIRIVMNKTYSRGKVSN--ILIIGAGDAGEMVIQELKRNPELKKVAV  184
             +++ +G+R+  R  R    + +    V +   L++GAG++G ++I+E+ R+ +++  +V
Sbjct  115  HLLLIGGSRLFWRVYR----RYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPV  170

Query  185  AIIDDDKNKIG-RIIHNVKIVGTTSDIKDVVEKYNVDEIIFSIANIEkrrkkdiidiCKN  243
              +DDDKNK    I + VK+ G   DI ++V K+ +  II++I+ + ++R ++I  IC+ 
Sbjct  171  LAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNI  230

Query  244  TNCKIKTIPGIYEIIDGKVDIKQIREVEIEDLLGREPIKTNLREISNYIEGKVILitggg  303
                +  +P I +++ G +++++++ VE+EDLLGR+P+  ++  IS  +  K IL+TG+G
Sbjct  231  EGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAG  290

Query  304  gsigsELCRQIAGFNPKELIIVDNYENNAYSIQQELLRKYKNKLDLKTVIASIREEKRMD  363
            GSIGSE+CRQ++ F+P+ +I++++ EN+ YSI+QEL + Y N++++  VIA +++  R+ 
Sbjct  291  GSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRIL  350

Query  364  EIFNKYKPEVVFHAAAHKHVPLMESSPGEAIKNNIFGTLNIAGLSSKYRAKKFVLISTDK  423
            E+ N +KP  V+HAAAHKHVPLME +P EAI+NNI+GT N+A  +      KFV+ISTDK
Sbjct  351  EVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDK  410

Query  424  AVNPTNIMGATKRAAEMIIQTMNAE-SQTEFVAVRFGNVLGSNGSVIPLFKKQIEDGGPV  482
            AVNP+N+MGATKR AEM+IQ++N + S+T FVAVRFGNVLGS GSVIPLFK+QIE GGPV
Sbjct  411  AVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPV  470

Query  483  TVTHPDIIRYFMTIPEAVGLVIQAGAMAKGGEIFVLDMGEPVRILDLAKNLIKFSGFEPD  542
            TVTHP++ RYFMTIPEA  LV+QAGA+A+GGE+FVLDMG PV+I+DLAKNLI++SG   +
Sbjct  471  TVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKE  529

Query  543  VDIKIEFSGLRPGEKLYEELLMSEEGLLDTEHKKIFIGRPIDVDREKITKYLK  595
             DI IEFSG+RPGEKLYEELL  +E   +    KI+        R K+  Y+K
Sbjct  530  EDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIY--------RGKVDHYIK  574

218) Acear_2111 in NC_014378


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  338 bits (1268),  Expect = 6e-94, Method: Compositional matrix adjust.
 Identities = 239/525 (46%), Positives = 366/525 (70%), Gaps = 35/525 (6%)

Query  62   GLYKKMWHYASINELKSIIRIVA-------------LINLSF-TLYIFLAQISFSRSVII  107
             LY + W+YAS++EL S+++ V+             + + +F  LY+    I+    +++
Sbjct  63   NLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYF----ITWMMHLLL  118

Query  108  ISGVLNilflgglrfllrliKDYLEYERCDGADTK-VLIVGAGDAAEILIREMYKHPELE  166
            I+G               + + Y  Y   ++ + K  L+VGAG+++ +LIREM +  ++ 
Sbjct  119  IGG------------SRLFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMR  166

Query  167  KEIVGLVDDDPEKLGLEIHGK-KVLGDRYDIPDIIEEYDVCEVIIAIPSTAGEAIEKIYD  225
             + V  VDDD +K  + I  + KV G   DIP+++  + +  +IIAIP+ +   ++ I  
Sbjct  167  MQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINK  226

Query  226  LSNQDGVEIKIVPGLNEIINDGFNLNQIREVGVEDLLRREQVDLNTDQICSYLKDKTVLV  285
            + N +GVE+  +P +++++++ +++N+++ V VEDLL R+ V+L+   I   L +KT+LV
Sbjct  227  ICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILV  286

Query  286  TGGGGSIGSELCRQIAHFSPERLIIFDISENNTYFIDLELKEKFNN-LEIIPVIGSIQDK  344
            TG+GGSIGSE+CRQ++ F P+++I+++ +EN+ Y I+ EL   + N +E++PVI+ +Q+K
Sbjct  287  TGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNK  346

Query  345  HKLEQTFERYQPDVVFHAAAHKHVPLMEHNPEEAVKNNIFGTKRLAETADECNVERFVLI  404
             ++ +  + ++P  V+HAAAHKHVPLME NP+EA++NNI+GTK +AE+A E +V +FV+I
Sbjct  347  TRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMI  406

Query  405  STDKAVNPTNVMGSTKRTAEMIIQGLNKE-SKTKFMAVRFGNVLGSKGSVIPLFKRQIAQ  463
            STDKAVNP+NVMG+TKR AEM+IQ+LN + SKT F+AVRFGNVLGS+GSVIPLFK QI  
Sbjct  407  STDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIES  466

Query  464  GGPVTVTHKEVERYFMTIPEAAQLVIQAGSLGTGGEVFVLDMGEPVKIIDLAKDLIKLSg  523
            GGPVTVTH E+ RYFMTIPEA++LV+QAG+L+ GGEVFVLDMG PVKI+DLAK+LI+LS 
Sbjct  467  GGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLS-  525

Query  524  levgedieieiigLRPGEKLSEELLYDDENTISTDHDRIFITNLN  568
                EDI IE+ G+RPGEKL EELL  +E       ++I+  +++
Sbjct  526  GKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVD  570

219) Bphyt_0902 in NC_010681


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  338 bits (1268),  Expect = 6e-94, Method: Compositional matrix adjust.
 Identities = 226/539 (42%), Positives = 368/539 (69%), Gaps = 16/539 (2%)

Query  62   IFGLYRGMWVFASLPDLMRIAKAVMAGAFTMMMVAVMAQPHPIIPRSVLA--VSPLLLFL  119
            +F LY+  W +AS+++LM + KAV ++    +++  +  +++ + R  +   +  LLL  
Sbjct  61   VFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLL--  118

Query  120  AMGGSRALYRASKEFYLYGGLVGQGKPVVVLGAGNAGASLARELSRSSEWRLVGLL--DD  177
             +GGSR + R  + +++  ++  + K+ +V+GAG++G+ L RE+ RS + R+  +L  DD
Sbjct  119  -IGGSRLFWRVYRRYFIDNAV--EKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDD  175

Query  178  DPAKQGREIYG-YKVWGPISDLQHWASDMKVEHAIIAIPSASVDAQRRVATLCVRAGVRA  236
            D  KQ   I    KV G + D+ +     ++   IIAIP+ S      +  +C   GV  
Sbjct  176  DKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVEL  235

Query  237  MVLPALTTLTQGEAFLSRVRQIDLEDLLGREPVRIDMPHVEALLSGRVVMVTGAGGSIGS  296
              +P +  +  GE  ++ ++++++EDLLGR+PV +DM+ +   L+ + ++VTGAGGSIGS
Sbjct  236  FKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGS  295

Query  297  ELCRQILRFEPAQLIAFDLSEYAMYRLTEELHDRF-PKLSVVPVIGDAKDSLLLDQVLSR  355
            E+CRQ+ +F+P ++I ++ +E ++Y + +EL   +  ++  VPVI+D ++   + +V++ 
Sbjct  296  EICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNE  355

Query  356  YTPHILFHAAAYKHVPLMEELNAWQAVRNNVLGTYRVARAAIRHDVKHFVLISTDKAVNP  415
            + P  ++HAAA KHVPLME  N+ +A+RNN+LGT  VA +A   +V  FV+ISTDKAVNP
Sbjct  356  FKPYAVYHAAAHKHVPLME-YNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNP  414

Query  416  TNVMGASKRLAEMACQALQQTSTRTQFETVRFGNVLGSAGSVIPKFQQQIAKGGPVTVTH  475
            +NVMGA+KR+AEM  Q+L++ +++T F +VRFGNVLGS GSVIP F++QI  GGPVTVTH
Sbjct  415  SNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTH  474

Query  476  PEITRFFMTIPEASQLVLQASSMGHGGEIFILDMGEPVKIVDLARDLIRLYGFSEEHIRI  535
            PE+TR+FMTIPEAS+LVLQA+++++GGE+F+LDMG PVKIVDLA++LIRL G  EE+I I
Sbjct  475  PEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGI  534

Query  536  VFTGLRPGEKLYEELLADDEATTRTPHPKL---RIAQ-AREAPDNLLDELLPWLMQHRV  590
             F+G+RPGEKLYEELL  +E   +    K+   ++ +  +   D ++++L+  + ++++
Sbjct  535  EFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKL  593

220) BRPE64_ACDS21790 in NC_021287


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  338 bits (1267),  Expect = 7e-94, Method: Compositional matrix adjust.
 Identities = 223/539 (42%), Positives = 372/539 (70%), Gaps = 13/539 (2%)

Query  64   VFGLYRGMWVFASLPDLMRISKSIVVGALVVMIGAVMSQPAPVIPRSVLIVSPLLLFLAM  123
            VF LY+  W +AS+++LM + K++  + +V ++   +  + + + R + +++ ++ +L +
Sbjct  61   VFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLR-LYFITWMMHLLLI  119

Query  124  GGARALYRAGKEFYLYGGLVGQGKPVIVLGAGTAGAMLARELSRSSEWRLVGLL--DDDP  181
            GG+R + R  + +++  ++  + K+ +V+GAG +G++L RE+ RS + R+  +L  DDD 
Sbjct  120  GGSRLFWRVYRRYFIDNAV--EKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDK  177

Query  182  AKQGREVLGH-KVLGSFGDLSRIAEQLKTDYVIIAIPSASVEEQRRVATLCVRAGVKVMV  240
             KQ   +  + KV G   D++ +  +++   +IIAIP+ S      +  +C   GV +  
Sbjct  178  NKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFK  237

Query  241  LPALSQLTAGEGGFLSRVRQIDLEDLLGREPVKIDMPHVERLLHGRVVMVTGAGGSIGSE  300
            +P + ++ +GE   ++ ++++++EDLLGR+PV +DM+ + R L  + ++VTGAGGSIGSE
Sbjct  238  MPNIEDVLSGELE-VNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSE  296

Query  301  LCRQILRFSPAQLIAYDLSEYAMYRLIEELHEKFPE-CSVIPVVGDAKDSLLLDQTMVRF  359
            +CRQ+ +F P ++I  + +E ++Y + +EL   + +    +PV++D ++   + + M  F
Sbjct  297  ICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEF  356

Query  360  RPHIVFHAAAYKHVPLMEEQNAWQAVRNNVLGTLRVARAAIRHDVRHFVLISTDKAVNPT  419
            +P  V+HAAA KHVPLME  N+ +A+RNN+LGT  VA +A   +V  FV+ISTDKAVNP+
Sbjct  357  KPYAVYHAAAHKHVPLME-YNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPS  415

Query  420  NVMGASKRLAEMACQALQQSAPHTQFETVRFGNVLGSAGSVIPKFQQQISKGGPVTVTHP  479
            NVMGA+KR+AEM  Q+L++  + T F +VRFGNVLGS GSVIP F++QI  GGPVTVTHP
Sbjct  416  NVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHP  475

Query  480  EITRFFMTIPEAAQLVLQASSMGRGGEIFILDMGQPVKIVDLARDLIRLYGYSEEQIRIT  539
            E+TR+FMTIPEA++LVLQA+++++GGE+F+LDMG+PVKIVDLA++LIRL G  EE+I I 
Sbjct  476  EMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIE  535

Query  540  FTGLRPGEKLYEELLADDETTTRTPHPKL---RIAQ-ARGVPDNFIDELLPWLMQHRVL  594
            F+G+RPGEKLYEELL  +E   +    K+   ++ +  +   D ++++L+  + ++++L
Sbjct  536  FSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLL  594

221) CLS_02560 in NC_021047


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  337 bits (1264),  Expect = 1e-93, Method: Compositional matrix adjust.
 Identities = 234/498 (47%), Positives = 348/498 (70%), Gaps = 9/498 (1%)

Query  68   FLAHLYSTMW---SVAGIREVIRIVLSCGLSTVLQIAGMTLLQFFMPRSYYIISFVALCI  124
            ++ +LY   W   SV+ +  V++ V S  + T+L ++ +     F+ R Y+I   + L +
Sbjct  60   YVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFL-RLYFITWMMHL-L  117

Query  125  AVTGIRLSYRIKHSLFPSGNRGGSRIMIVGAGTSGSVILKEMMTSRHTN-GTVVCFADDD  183
             + G RL  R+ +  F          ++VGAG +GSV+++EM+ S++     V+   DD 
Sbjct  118  LIGGSRLFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDK  177

Query  184  INKKGKYLNGVPIAGGREEIPELAKQYRVDEIYVAIPSAPAKERKKILEICRETDCKIKM  243
             ++K    + V + G  E+IPEL K++R+  I +AIP+ + K  + I  IC   +  +  
Sbjct  178  NKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFK  237

Query  244  LPGIYQLLNGEVSVAKLREVQIEDLLGRDPIRVNLDEIMGYVQDKVILVTGGGGSIGSEL  303
            +P I ++L+GE+ V +L+ V++EDLLGRDP+ +++  I   + +K ILVTG+GGSIGSE+
Sbjct  238  MPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEI  297

Query  304  CRQIASHRPKQLIVFDVYKNNAYDLQQELERSFPE-LNLTVLIGSVRNTHRIESVFEQYR  362
            CRQ++   P+++I+++   N+ Y ++QEL +++ + +++  +I+ V+N  RI  V ++++
Sbjct  298  CRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFK  357

Query  363  PDIVYHAAAHKHVPLMENSPNEAIKNNVFGTYKTARAAGKYGAKRFVLISTDKAVNPTNI  422
            P  VYHAAAHKHVPLME +P+EAI+NN++GT + A +A      +FV+ISTDKAVNP+N+
Sbjct  358  PYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNV  417

Query  423  MGASKRMCEMVIQMM-DHRYRTEFVAVRFGNVLGSNGSVIPLFKKQIAEGGPVTVTHPDI  481
            MGA+KR+ EMVIQ + ++  +T FVAVRFGNVLGS GSVIPLFK+QI  GGPVTVTHP++
Sbjct  418  MGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEM  477

Query  482  IRYFMTIPEAVSLVLQAGAYAKGGEIFVLNMGEPVKILDLAKNLIRLSGYVPGEDIAIEF  541
             RYFMTIPEA  LVLQAGA A+GGE+FVL+MG PVKI+DLAKNLIRLSG    EDI+IEF
Sbjct  478  TRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIGIEF  536

Query  542  TGLRPGEKLYEEMLMDEE  559
            +G+RPGEKLYEE+L  +E
Sbjct  537  SGIRPGEKLYEELLNKNE  554

222) yveM in NC_012491


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  336 bits (1261),  Expect = 2e-93, Method: Compositional matrix adjust.
 Identities = 234/475 (50%), Positives = 357/475 (76%), Gaps = 10/475 (2%)

Query  109  LFLMTLAFVLLGITGSRFVWK---WWYEEREKRTQDRRRTLIIGAGSAGVLVAREMKTSP  165
            L+++T    LL I GSR+ W+   + + +    + +++ TL++GAG +G ++ REM  S 
Sbjct  107  LYFITWMMHLLLIGGSRLFWRVYRRYFIDN---AVEKKATLVVGAGQGGSVLIREMLRSQ  163

Query  166  LSELRPVAFIDDEPSKQNLRVYG-LPvvgnradvvrvvQRLSISDIVIAMPSASRQTIKE  224
               ++PV  +DD+ +KQ++ +   + V G   D+  +V+++ I  I+IA+P+ S++ ++E
Sbjct  164  DMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNE  223

Query  225  IFDICKTTRASVKILPHVADIISGKITMNMIRDVALEDLLGREPVQVNLEEITGYLRQQV  284
            I  IC+     +  +P++ D++SG + +N ++ V +EDLLGR+PV++++  I+  L ++ 
Sbjct  224  INKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKT  283

Query  285  VLVTGAGGSIGSELCRQIARFGPRKLLLLGNEENGIFEMGLELSRLFPEQ-ETVSLIADI  343
            +LVTGAGGSIGSE+CRQ+++F+P+K++LLG+ EN+I+ +  ELS+ + ++ E V++IAD+
Sbjct  284  ILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADV  343

Query  344  RDRQRISSIMHEYCPavvfhaaahkhvPLMENNPCEALKNNILGTKNVAECALETSVSHF  403
            +++ RI  +M+E+ P  V+HAAAHKHVPLME NP EA++NNILGTKNVAE A E  VS F
Sbjct  344  QNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKF  403

Query  404  ILISTDKAVNPTSVMGATKRIAELLIQGYN-HFGLTRFAAVRFGNVLGSRGSVVPVFLNQ  462
            ++ISTDKAVNP++VMGATKRIAE++IQ+ N + + T F AVRFGNVLGSRGSV+P+F NQ
Sbjct  404  VMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQ  463

Query  463  IRAGGPITITHPDMERFFMTIPEAAQLVIQAGALAQGGEIFILDMGKPVKIVDMALDLIR  522
            I +GGP+T+THP+M R+FMTIPEA++LV+QAGALAQGGE+F+LDMGKPVKIVD+A +LIR
Sbjct  464  IESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIR  523

Query  523  LAGLEPGKDISIVFTGIRSGEKLYEEILTAEEGLSSTCHNRIFIGKPLDFSWNEL  577
            L+G     DI+I F+GIR+GEKLYEE+L  +E  +    ++I+ GK  ++   E+
Sbjct  524  LSG-KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEV  577

223) Cphy_3494 in NC_010001


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  336 bits (1260),  Expect = 3e-93, Method: Compositional matrix adjust.
 Identities = 230/486 (48%), Positives = 348/486 (72%), Gaps = 9/486 (1%)

Query  68   YIFRLYHSLWLFAGITELENIIAASIGVSALQVIGFILLKLPIP--RSYFFIFPVLLIIA  125
            Y+F LYH  W +A+++EL +++ A  +   + ++   LL    P  R YF+   + L++ 
Sbjct  60   YVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLI  119

Query  126  TMASRFTYRAVRVKLRKRENGKSCENVMVIGAGEASNMIIKEIINSDHIHKVVKCIIDDA  185
              +SR+  R  R  +      K     +V+GAG++++++I+E++ S++++      +DD 
Sbjct  120  G-GSRLFWRVYRRYFIDNAVEKKA--TLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDD  176

Query  186  EDKLGRYIHG-IKVIGSRDTIIDNVMKYEINEIIIAMPSVSRKEISKILEICKETDCKLY  244
             +K    I   +KV G  + I + V K+ I+ IIIA+P++S+K ++ I  IC+  +  L+
Sbjct  177  KNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELF  236

Query  245  ILPGMYQFLNGEVGVSELRGVEVEDLLGRDPIRVDLDSIMGYVSDKVVLVTGGGGSIGSE  304
             +P + + L+GE+ V++L+ VEVEDLLGRDP+ +D+  I   +++K +LVTG+GGSIGSE
Sbjct  237  KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSE  296

Query  305  LCRQIAGHKPKQLVIVDIYENNAYDIQQELQKRYPN-LDIVTLIGSVRNEKRLDKIFDTY  363
            +CRQ++   P+++++++  EN+ Y I+QEL K Y N +++V +I+ V+N  R+  + + +
Sbjct  297  ICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEF  356

Query  364  RPNIVYHAAAHKHVPLMEDSPNEAVKNNVFGTFKTAQAADKYGVEKFVLISSDKAVNPTN  423
            +P  VYHAAAHKHVPLME +P+EA++NN++GT + A++A    V KFV+IS+DKAVNP+N
Sbjct  357  KPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSN  416

Query  424  IMGATKRMCEMIVQTFNR-KSKTEFVAVRFGNVLGSNGSVIPLFKKQIEAGGPVTVTHPD  482
            +MGATKR+ EM++Q++N  +SKT FVAVRFGNVLGS GSVIPLFK+QIE+GGPVTVTHP+
Sbjct  417  VMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPE  476

Query  483  IIRYFMTIPEAVSLVLQAGAYAKGGEIFVLDMGEPVKILDLATNLIRLSGYIPDVDIKIK  542
            + RYFMTIPEA  LVLQAGA A+GGE+FVLDMG PVKI+DLA NLIRLSG   + DI I 
Sbjct  477  MTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIGIE  535

Query  543  FTGLRP  548
            F+G+RP
Sbjct  536  FSGIRP  541

224) NH44784_023811 in NC_021285


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  335 bits (1259),  Expect = 3e-93, Method: Compositional matrix adjust.
 Identities = 237/509 (47%), Positives = 357/509 (71%), Gaps = 14/509 (2%)

Query  61   GLYRGMWVFASLPDLKRVLKavtvsssalivvvaLDRAEPTIPRSMMVLYPV---LLLLI  117
             LY+  W +AS+++L  VLKAVT S    +++V+L  +E+ + R    LY +   + LL+
Sbjct  63   NLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLR----LYFITWMMHLLL  118

Query  118  MGGGRAAWRMWKEHRLYGRLASQGKPvvvvgagtggaMLVRELERTADWHVVAL--VDDD  175
            +GG+R  WR+ +  R +   A + K+ +VVGAG GG++L+RE+ R+ D ++ ++  VDDD
Sbjct  119  IGGSRLFWRVYR--RYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDD  176

Query  176  SKKWGLELSGR-RIVGPISELPNILGDHRASHVILAMTSATPAMRREIADLAVKAGAQVF  234
             +K  + ++ R ++ G + ++P+++   R   +I+A+ + +     EI  +    G ++F
Sbjct  177  KNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELF  236

Query  235  IVPGLEELMSGQVAINAMRPVVIDDLLGRDVVRIDTEHVQAMLQGKTVLVTGAGGSIGSE  294
             +P +E+++SG++ +N ++ V ++DLLGRD V +D   +   L  KT+LVTGAGGSIGSE
Sbjct  237  KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSE  296

Query  295  LCRQLARFSPARLVLVEANEFALYNVEQWFHQHWPQ-LELVLLAGDVKDAARMEEVFQGW  353
            +CRQ+++F P +++L+   E ++Y+++Q + +   + +E+V + +DV++ +R+ EV +  
Sbjct  297  ICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEF  356

Query  354  RPDVVFHAAAYKHVPLMEVANAWQAARNNVLGTLRVAECAVRYGASRFVLISTDKAVNPT  413
            +P  V+HAAA KHVPLME  N+ +A RNN+LGT  VAE A     S+FV+ISTDKAVNP+
Sbjct  357  KPYAVYHAAAHKHVPLMEY-NPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPS  415

Query  414  NVMGATKRMAEMVCESLYRRHQTTQFSMVRFGNVLGSTGSVIPKFQAQIARGGPVTVTHP  473
            NVMGATKR+AEMV +SL   +  T F  VRFGNVLGS GSVIP F+ QI  GGPVTVTHP
Sbjct  416  NVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHP  475

Query  474  EINRYFMSIPEAAQLVLQAASMGAGGEIFVLDMGHPVKIVDLARNMIRLSGYSEAQIRIE  533
            E+ RYFM+IPEA++LVLQA++++ GGE+FVLDMG PVKIVDLA+N+IRLSG  E +I IE
Sbjct  476  EMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIE  535

Query  534  FTGLRPGEKLYEELLADAEQTIETPHEKL  562
            F+G+RPGEKLYEELL   E   +   EK+
Sbjct  536  FSGIRPGEKLYEELLNKNEIHPQQVYEKI  564

225) ebA1630 in NC_006513


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  335 bits (1257),  Expect = 4e-93, Method: Compositional matrix adjust.
 Identities = 201/440 (46%), Positives = 328/440 (75%), Gaps = 7/440 (1%)

Query  121  IMGGGRAAYRVFKEHREFGALRGVGKPVLVLGAGREAMNLIQELRRSREWHVVGLL--DD  178
            ++GG+R   RV++  R F       K+ LV+GAG+ +  LI+E+ RS++ ++  +L  DD
Sbjct  118  LIGGSRLFWRVYR--RYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDD  175

Query  179  DPLKRHREVCG-VRVLGAVGEIAECADALHVRHAIIAMPGANAERHRHVANLCVRAGVRV  237
            D  K+   +   V+V G V +I+E    ++++  IIA+P  +  R  ++ ++C   GV +
Sbjct  176  DKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVEL  235

Query  238  FILPAIEQLIAGHDTLSQMRSLDLEDLLGREPVEIDTPQVREMLAGRVAMVTGAGGSIGA  297
            F +P IE++++G+  +++++ +++EDLLGR+PVE+D + +   L+ +  +VTGAGGSIG+
Sbjct  236  FKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGS  295

Query  298  ELCRQIARFGPAQIIAFELNEFALYTLSEEFAEEFPE-IGLVAIAGDVKDRRRVMEILER  356
            E+CRQ+++F+P +II +   E ++Y++ +E++  + + I +V++ +DV+++ R++E+++ 
Sbjct  296  EICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNE  355

Query  357  HAPAVVFHAAAYKHVPLMEEHNAWQAVRNNVLGTWILAQASAALGVERFVLVSTDKAVNP  416
              P  V+HAAA KHVPLME  N+ +A+RNN+LGT  +A+++    V +FV++STDKAVNP
Sbjct  356  FKPYAVYHAAAHKHVPLME-YNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNP  414

Query  417  TNVMGASKRLAEIICQEMQRQSRRTRFEMVRFGNVLGSAGSVIPKFQAQIERGGPVTVTH  476
            +NVMGA+KR+AE++ Q ++ ++ +T F  VRFGNVLGS GSVIP F+ QIE GGPVTVTH
Sbjct  415  SNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTH  474

Query  477  PEITRYFMAIHEAAQLVLQAAAMGEGGEIFVLDMGQPVKVLDLARDMIRLSGKSEREVPI  536
            PE+TRYFM+I EA++LVLQA+A+++GGE+FVLDMG+PVK++DLA+++IRLSGK E ++ I
Sbjct  475  PEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGI  534

Query  537  VFTGLRPGEKLFEEVLAHSE  556
             F+G+RPGEKL+EE+L  +E
Sbjct  535  EFSGIRPGEKLYEELLNKNE  554

226) capDb in NC_020516


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  335 bits (1257),  Expect = 4e-93, Method: Compositional matrix adjust.
 Identities = 230/511 (46%), Positives = 360/511 (71%), Gaps = 18/511 (3%)

Query  61   GLYRGIWVFASLPDLARVLRAVAISSLAVWAFVAVYRASPGVPRSTLILYPM--LLVLIM  118
             LY+  W +AS+++L  VL+AV+ S +    +V+          + L LY +  ++ L++
Sbjct  63   NLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVS----LLISESPFLRLYFITWMMHLLL  118

Query  119  AGGRAAYRMWKEHRLY--GGLIAKGKPvvvvgagrggaMLLRELQRSPDWRVVGLVDDDS  176
             GG   +  W+  R Y  +  + K K+ +VVGAG+GG++L+RE+ RS D R+  ++  D 
Sbjct  119  IGGSRLF--WRVYRRYFIDNAVEK-KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDD  175

Query  177  DKWGRELLGLP----VLGPVKALPQILVNERVEHVILAMPSAATKVRRAATDLAVHAGAK  232
            DK  ++ + +     V G V  +P+++ + R+  +I+A+P+ + K       +    G  
Sbjct  176  DK-NKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVE  234

Query  233  VFMVPGLEDVMAGRVAVSSLRRVEIEDLLGREPVWIDTPHIEAMFKGKVVLVTGAGGSIG  292
            +F +P +EDV++G + V++L++VE+EDLLGR+PV +D + I   +  K +LVTGAGGSIG
Sbjct  235  LFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIG  294

Query  293  SELCRQLARFAPRRVVLYEQNEFALYTMEQWFAN-HAQGLEIVSLAGDVKDAARLDEVFA  351
            SE+CRQ+++F P++++L  + E ++Y+++Q +++  ++ +E+V++ +DV++ +R+ EV  
Sbjct  295  SEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMN  354

Query  352  AWRPEVVFHAAAYKHVPLMESANAWQAVRNNVLGTLRVGEAAQHHGAGRFILVSTDKAVN  411
              +P  V+HAAA KHVPLME  N+ +A+RNN+LGT  V+E+A++   ++F+++STDKAVN
Sbjct  355  EFKPYAVYHAAAHKHVPLMEY-NPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVN  413

Query  412  PTNVMGASKRLAELVCHALQQRGQGTQFEIVRFGNVLGSTGSVIPKFQEQIARGGPVTVT  471
            P+NVMGA+KR+AE+V ++L++    T F  VRFGNVLGS GSVIP F++QI  GGPVTVT
Sbjct  414  PSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVT  473

Query  472  HPEITRYFMSIPEAAQLVLQAAAMGQGGEIFVLDMGDPVKIVDLARNMIRLSGYTEGEIR  531
            HPE+TRYFM+IPEA++LVLQA+A++QGGE+FVLDMG PVKIVDLA+N+IRLSG  E +I 
Sbjct  474  HPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIG  533

Query  532  IEFTGLRPGEKLYEELLADAEKTRETPHAKL  562
            IEF+G+RPGEKLYEELL   E   +    K+
Sbjct  534  IEFSGIRPGEKLYEELLNKNEIHPQQVYEKI  564

227) Bphy_2289 in NC_010622


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  335 bits (1258),  Expect = 4e-93, Method: Compositional matrix adjust.
 Identities = 230/539 (43%), Positives = 372/539 (70%), Gaps = 12/539 (2%)

Query  62   IFGLYRGMWVFASLPDLMRISKAVATGALLAMILAVMIQPVPIIPRsvllvsplllflAM  121
            +F LY+  W +AS+++LM + KAV+++ +++++L  ++ + + + R  ++   + L+L +
Sbjct  61   VFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLL-I  119

Query  122  GGSRALYRAAKEFYLYGGLVAQGKPVVVIGAGTAGAMLARELSRSSEWRLIGLL--DDDV  179
            GGSR + R  + +++  +   + K+ +V+GAG +G++L RE+ RS + R+  +L  DDD 
Sbjct  120  GGSRLFWRVYRRYFI--DNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDK  177

Query  180  SKQGREIYG-YKVLGPISKLPEIAEAMKTEYAIIAIPSAPVEQQRRAATLCVRAGVRAMV  238
            +KQ   I    KV G +  +PE+    +    IIAIP+ +  +      +C   GV    
Sbjct  178  NKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFK  237

Query  239  LPALTDMTEGQASMSRVRHIDLEDLLGREPVHIDTPHVEALLHARVVMVTGAGGSIGSEL  298
            +P + D+  G+  ++ ++ +++EDLLGR+PV++D + +   L  + ++VTGAGGSIGSE+
Sbjct  238  MPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEI  297

Query  299  CRQILRFKPAQLIAFDISEYAMYRLVEELLERFPG-LSIVPVIGDAKDSLLLDQVMARFT  357
            CRQ+ +F P ++I ++ +E ++Y + +EL   +   + +VPVI+D ++   + +VM  F 
Sbjct  298  CRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFK  357

Query  358  PHIVYHAAAYKHVPLMEEQNAWQAVRNNVLGTYRVARAAIRHDVKRFVLISTDKAVNPTN  417
            P  VYHAAA KHVPLME  N+ +A+RNN+LGT  VA +A   +V +FV+ISTDKAVNP+N
Sbjct  358  PYAVYHAAAHKHVPLME-YNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSN  416

Query  418  VMGASKRLAEMACQALQQTSERTQFETVRFGNVLGSAGSVIPKFQQQIAKGGPVTVTHPE  477
            VMGA+KR+AEM  Q+L++ + +T F +VRFGNVLGS GSVIP F++QI  GGPVTVTHPE
Sbjct  417  VMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPE  476

Query  478  ITRFFMTIPEASQLVLQASSMGHGGEIFILDMGEPMKIVDLARDLIRLYGFTEEQIRIEF  537
            +TR+FMTIPEAS+LVLQA+++++GGE+F+LDMG P+KIVDLA++LIRL G  EE+I IEF
Sbjct  477  MTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEF  536

Query  538  TGLRPGEKLYEELLADEETTTRTPHPKL---RIAQ-ARGVPDNLLDELLPWLMQHRVLT  592
            +G+RPGEKLYEELL  +E   +    K+   ++ +  +   D ++++L+  + ++++L 
Sbjct  537  SGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLK  595

228) Cagg_1997 in NC_011831


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  335 bits (1258),  Expect = 4e-93, Method: Compositional matrix adjust.
 Identities = 225/535 (43%), Positives = 362/535 (68%), Gaps = 22/535 (4%)

Query  57   HLFVFRQLGVYARYWRYASLDELLLLISAVSLAMIIAAPTTFIVAGIIPMALLPRSVPVI  116
            H+F +  + +Y R W YAS+ EL+ ++ AV+ +++++     ++ +  P   L       
Sbjct  56   HIFAY-VFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRL-------  107

Query  117  FFC---FNLVMTIGPRLLSRLHWHHQLMQRKRKGEINGKQQRVLIMGAGSAGTMIARELR  173
            +F     +L++  G+RL+ R+ ++  +       +    ++  L++GAG +G+++ RE+ 
Sbjct  108  YFITWMMHLLLIGGSRLFWRVYRRYFI-------DNAVEKKATLVVGAGQGGSVLIREML  160

Query  174  DNPQLGMVAVGFLDDDPLKFGMCIYG-IPVLGNRFDIPRLAREYSAHLVIIAMPSATGKE  232
             + ++ M +V  +DDD  K  M I   + V G   DIP L + +    +IIA+P+ + K 
Sbjct  161  RSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKR  220

Query  233  IRSIVELCERTGVKTKIMPGLYEMLDGKVSVNQLRNVQIEDLLRRKPVQTDIVAVHNLLR  292
            +  I  +C+  GV    MP + ++L G + VN+L++V++EDLL R PV+ D+  +   L 
Sbjct  221  LNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELT  280

Query  293  GKRVMVTGGGGSIGSELCRQILRAEPAELIILGHGENSVFTIEQELRRQVTSATRLTTII  352
             K ++VTG+GGSIGSE+CRQ+ + +P  +I+LGHGENS+++I+QEL +   +   +  +I
Sbjct  281  NKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVI  340

Query  353  ADIRFAERVMHIFEQYQPEIVFHAAAHKHVPLMELHPSEAVTNNVLGTRNLLSAAMQVNV  412
            AD++   R++++ ++++P  V+HAAAHKHVPLME +P EA+ NN+LGT+N+  +A + +V
Sbjct  341  ADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEV  400

Query  413  SHFVMISSDKAVNPTSVMGATKRVAELLVHEAARLTGR-AYVAVRFGNVLGSRGSVVLTF  471
            S FVMIS+DKAVNP++VMGATKR+AE++++      ++ ++VAVRFGNVLGSRGSV+  F
Sbjct  401  SKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLF  460

Query  472  KQQIAAGGPVTVTHPEMRRFFMTIPEAVQLTLQASVLGKGGEVFVLDMGEPIRIVDLARD  531
            K+QI +GGPVTVTHPEM R+FMTIPEA +L LQA+ L++GGEVFVLDMG P++IVDLA++
Sbjct  461  KNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKN  520

Query  532  MIELSGLQVGRDIDIVFTGLRPGEKLYEELFIEGEEYQRTEHAKIFIARNASQFV  586
            +I LSG +   DI+I F+G+RPGEKLYEEL+   E   +    KI+ ++   +++
Sbjct  521  LIRLSG-KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGK-VDHYI  573

229) wbpM in NC_007651


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  335 bits (1256),  Expect = 6e-93, Method: Compositional matrix adjust.
 Identities = 225/540 (42%), Positives = 373/540 (70%), Gaps = 14/540 (2%)

Query  86   VFGLYRGLWVFASLPDLLRISKAVVGGSLIVMIGAVMLQPVPIIPRSVLVLSP-MLLFLA  144
            VF LY+  W +AS+++L+ + KAV ++ ++ ++   +L + + + R  L +   M+ +L 
Sbjct  61   VFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLR--LYFITWMMHLLL  118

Query  145  MGGARALYRATKEFYLYGGLIGQGKPVLILGAGNAGASLARELSRSGEWRLAGLL--DDD  202
            +GG+R + R  + +++  ++  + K+ L++GAG++G+ L RE+ RS + R+  +L  DDD
Sbjct  119  IGGSRLFWRVYRRYFIDNAV--EKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDD  176

Query  203  PAKHGREVYG-YKVLGPISevahwaeaakaeyaiiaiPSASVETQRRVATLCVRAGVKAM  261
              K+   +    KV G + ++++     +    IIAIP+ S      +  +C   GV   
Sbjct  177  KNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELF  236

Query  262  VLPSLTALMPGQGILSQIRQIDLEDLLGREAVTIDTPHVEALLRGRVVMVTGAGGSIGSE  321
             +P++  +++G+  +++++++++EDLLGR++V +D + +   L  + ++VTGAGGSIGSE
Sbjct  237  KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSE  296

Query  322  LCRQILKFQPAQLIAFDLSEYAMYRLTEELRERFPD-LPVVPIIGDAKDSLLLDQVMSRY  380
            +CRQ+ KF+P ++I ++ +E ++Y + +EL   + + +  VP+I+D ++   + +VM+ +
Sbjct  297  ICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEF  356

Query  381  APHIVFHAAAYKHVPLMEELNAWQALRNNVLGTYRVARAAIRHDVRHFVLISTDKAVNPT  440
             P  V+HAAA KHVPLME  N+ +A+RNN+LGT  VA +A   +V  FV+ISTDKAVNP+
Sbjct  357  KPYAVYHAAAHKHVPLME-YNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPS  415

Query  441  NVMGASKRLAEMACQALQQTSARTQFETVRFGNVLGSAGSVIPKFQQQIAKGGPVTVTHP  500
            NVMGA+KR+AEM  Q+L++ +++T F +VRFGNVLGS GSVIP F++QI  GGPVTVTHP
Sbjct  416  NVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHP  475

Query  501  EITRFFMTIPEASQLVLQASSMGQGGEIFILDMGEPVKIVDLARDLIRLYGFTEDHIRIE  560
            E+TR+FMTIPEAS+LVLQA++++QGGE+F+LDMG PVKIVDLA++LIRL G  E++I IE
Sbjct  476  EMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIE  535

Query  561  FSGLRPGEKLYEELLADDETTTRTPHPKLRTARA----REVPDHLLDELLPWLMQHRVLS  616
            FSG+RPGEKLYEELL  +E   +    K+  ++     +   D ++++L+  + ++++L 
Sbjct  536  FSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLK  595

230) Sgly_3011 in NC_015172


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  334 bits (1252),  Expect = 1e-92, Method: Compositional matrix adjust.
 Identities = 250/530 (48%), Positives = 377/530 (72%), Gaps = 18/530 (3%)

Query  64   FGLYKTIWRYASVGELLSITYAvtvgvgitfvivffQAPQRMPYTVSLLF--WLTTIFLV  121
            F LY   W YASV+EL+S+  AVT ++ +T+++V +  ++  P+ + L F  W+  ++L+
Sbjct  62   FNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISES-PF-LRLYFITWMMHLLLI  119

Query  122  GGARFTQRLRQENSKH-SSGPEQPKRILIIGAGDAGVLALRE-LKNREFQEGYPIGFIDD  179
            GG+R+   +++   +     + + K  L++GAG++G + +RE L++++ +   P+  +DD
Sbjct  120  GGSRL---FWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQ-PVLAVDD  175

Query  180  SRRKISLQL-QGFPVLGSREEIPEVVRKYKVDEIIIAIPSASGETIRELVEICKGTKATL  238
             + K  + + +   V G  E+IPE+V+K+++  IIIAIP+ S   + E+  IC+     L
Sbjct  176  DKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVEL  235

Query  239  KILPGVYDIIGGKLNVSAIRNVQVEDLLGRDPVSVDLEEVAGYLKGQVILVTGAGGSIGS  298
              +P + D+++G L+V+ +++V+VEDLLGRDPV +D+  ++  L  + ILVTGAGGSIGS
Sbjct  236  FKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGS  295

Query  299  ELCRQILRFGPEKLILAGRGENSIFEIEQEL-KKYPVSAE----ILDIKDAEKVRRIFQK  353
            E+CRQ+ +F+P+K+IL G+GENSI+ I+QEL K Y    E    I D+++  ++  + + 
Sbjct  296  EICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNE  355

Query  354  YKPavvfhaaahkhvPLMENNPEEALRNNIYGTHNLAQAAAETGVKTFVLISTDKAVNPT  413
            +KP  V+HAAAHKHVPLME NP+EA+RNNI GT N+A++A E  V  FV+ISTDKAVNP+
Sbjct  356  FKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPS  415

Query  414  SIMGASKRIAEMVIQDY-DKRSETKFVAVRFGNVLGSRGSVIPTFKKQILAGGPVTVTDE  472
            ++MGA+KRIAEMVIQ   +  S T FVAVRFGNVLGSRGSVIP FK+QI +GGPVTVT+ 
Sbjct  416  NVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHP  475

Query  473  RMTRYFMTIPEAGQLVIQAGAMASGGEIFILDMGKPVKIIDLARDLIKLSGLEVDKDIKI  532
             MTRYFMTIPEA++LV+QAGA+A GGE+F+LDMGKPVKI+DLA++LI+LSG   + DI I
Sbjct  476  EMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIGI  534

Query  533  VTTGTRPGEKLFEELLTDEEGTTATKNKRIFVARPNNISSGQINEVVTEI  582
              +G RPGEKL+EELL  +E        +I+ ++ ++    +++ +V ++
Sbjct  535  EFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDL  584

231) capD in NC_016589


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  334 bits (1252),  Expect = 1e-92, Method: Compositional matrix adjust.
 Identities = 223/521 (43%), Positives = 358/521 (69%), Gaps = 12/521 (2%)

Query  62   VFGLYRGMWVFASLPDLMRISKSIvvgalvvmvgavmSQPMPIIPRSVLIVSPLLLFLAM  121
            VF LY+  W +AS+++LM + K++  + +V ++   +  + + + R + +++ ++ +L +
Sbjct  61   VFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLR-LYFITWMMHLLLI  119

Query  122  GGARALYRAGKEFYLYGGLVGQGKPVIVLGAGTAGAMLARELARSSEWRLVGLL--DDDP  179
            GG+R + R  + +++  ++  + K+ +V+GAG +G++L RE+ RS + R+  +L  DDD 
Sbjct  120  GGSRLFWRVYRRYFIDNAV--EKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDK  177

Query  180  AKQGREVLGH-KVLGSFGDLPRFAEQLKTDYVIIAIPSASVAEQRRVATLCVRAGVKVMV  238
             KQ   +  + KV G   D+P +  +++   +IIAIP+ S      +  +C   GV +  
Sbjct  178  NKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFK  237

Query  239  LPALSPLTEGTNFLSRVRQIDLEDLLGREPVKIDMPHVEQLLHGRVVMVTGGGGSIGSEL  298
            +P +  +  G   ++ ++++++EDLLGR+PV +DM+ + + L  + ++VTG+GGSIGSE+
Sbjct  238  MPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEI  297

Query  299  CRQILRFSPAQLIAYDLSEYAMYRLIEELHEKFPE-CSVIPVVGDAKDSLLLDQTMARFT  357
            CRQ+ +F P ++I  + +E ++Y + +EL   + +    +PV++D ++   + + M  F 
Sbjct  298  CRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFK  357

Query  358  PHIVFHAAAYKHVPLMEEQNAWQAVRNNVLGTLRVARAAIRHDVRHFVLISTDKAVNPTN  417
            P  V+HAAA KHVPLME  N+ +A+RNN+LGT  VA +A   +V  FV+ISTDKAVNP+N
Sbjct  358  PYAVYHAAAHKHVPLME-YNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSN  416

Query  418  VMGASKRLAEMACQALQQSAPRTQFETVRFGNVLGSAGSVIPKFQQQIAKGGPVTVTHPE  477
            VMGA+KR+AEM  Q+L++  ++T F +VRFGNVLGS GSVIP F++QI  GGPVTVTHPE
Sbjct  417  VMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPE  476

Query  478  ITRFFMTIPEAAQLVLQASSMGRGGEIFILDMGQPVKIVDLARDLIRLYGFSEEQIRIVF  537
            +TR+FMTIPEA++LVLQA+++++GGE+F+LDMG+PVKIVDLA++LIRL G  EE+I I F
Sbjct  477  MTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEF  536

Query  538  TGLRPGEKLYEELLADDETTTRTPHPKLRIAQARGVPDHFI  578
            +G+RPGEKLYEELL  +E   +    K+     RG  DH+I
Sbjct  537  SGIRPGEKLYEELLNKNEIHPQQVYEKI----YRGKVDHYI  573

232) ANT_22620 in NC_014960


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  334 bits (1253),  Expect = 9e-93, Method: Compositional matrix adjust.
 Identities = 231/527 (44%), Positives = 350/527 (67%), Gaps = 23/527 (4%)

Query  63   YFFGLYRRMWIYASIREalmvvaasvtasallaatmIAL---TSF-RLFVGFPRSVLIID  118
            Y F LY+R W YAS+ E + V+ A  ++  +    +  L   ++F RL+        +I 
Sbjct  60   YVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLY--------FIT  111

Query  119  FFLSVFAAGGLRFTLRLLAESRINQAIQEGAGLRQPQKVLIVGAGDAGALVVRELQKNPQ  178
              + ++  GG R+  R+     I++A++  A L       +VGAG++G++++RE+ ++ +
Sbjct  112  WMMHLLLIGGSRLFWRVYRRYFIDNAVEKKATL-------VVGAGQGGSVLIREMLRSQD  164

Query  179  LNLIPIGFLDDNPAKQRQQIYG-VPVVGTLSDLEKVIDQTRAQQVIIAIPSAAGRVVRLV  237
            + + P+  +DD+  KQ+  I   V V G + D+  ++ + R +++IIAIP+ + + +  +
Sbjct  165  MRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEI  224

Query  238  ADACRAKGVPFRTMPGIYELLGGTVSVSRLREVDITDLLRRNPVQIDESLVGATLSGKVV  297
               C   GV +  MP I ++L+G + V+ L+ V++ DLL R+PV++D +L++  L+ K +
Sbjct  225  NKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTI  284

Query  298  LITGAGGSIGRELCRQVARWGPSELILLGHGENSIFEALMELRENFPS-LLFRPVIADVR  356
            L+TGAGGSIG E+CRQV++ +P  +ILLGHGENSI+    EL   + + + F PVIADV+
Sbjct  285  LVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQ  344

Query  357  DYGRIRNVFLRHRPEIVFHAAAHKHVPLMELNVEEAVTNNVLGTMNVVSAALESGVERLV  416
            +  RI +V    +P  V+HAAAHKHVPLME N +EA+ NN+LGT NV  +A E+ V ++V
Sbjct  345  NKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFV  404

Query  417  MVSTDKAIRPANIMGATKRLAEMIVLDAARRSGR-SYSVVRFGNVLGSRGSVVPLFKRQI  475
            M+STDKA+ P+N+MGATKR+AEM++      +++ S+  VRFGNVLGSRGSV+PLFK QI
Sbjct  405  MISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQI  464

Query  476  ARGGPVTVTHPEMRRYFMTIPEAVHLVLQASAMGEGGETFVLNMGEQIRILDLAEDLIRL  535
              GGPVTVTHPEM RYFMTIPEA +LVLQA+A+++GGE FVL+MG  ++I+DLA +LIRL
Sbjct  465  ESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRL  524

Query  536  SGLEPGKDIEIVFTGIRPGEKLSEDLWDEGVPIERTEHPEIFRVNSE  582
            SG     DI I F+GIRPGEKL E+L +      +     I+R + +
Sbjct  525  SG-KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVD  570

233) MYA_0782 in NC_017920


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  333 bits (1251),  Expect = 1e-92, Method: Compositional matrix adjust.
 Identities = 224/539 (42%), Positives = 375/539 (70%), Gaps = 12/539 (2%)

Query  62   VFGLYRGLWVFASLPDLMRISKAVIGGGLIVMIGAVMFQPSPIIPRSVLLVSPLMLFLVM  121
            VF LY+  W +AS+++LM + KAV ++ ++ ++   ++ + + + R + +++ +M +L++
Sbjct  61   VFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLR-LYFITWMMHLLLI  119

Query  122  GGARALYRATKEFYLYGGLVGQGKPILVLGAGTAGASLARELSRSGEWRLVGLL--DDDP  179
            GG+R + R  + +++  ++  + K+ LV+GAG +G+ L RE+ RS + R+  +L  DDD 
Sbjct  120  GGSRLFWRVYRRYFIDNAV--EKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDK  177

Query  180  TKRGREIYG-YKVLGSFNDLKHWTDALKVEYAIIAIPSASVETQRRVATLCVRAGIKAMV  238
             K+   I    KV G  +D+ +    +++   IIAIP+ S      +  +C   G+    
Sbjct  178  NKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFK  237

Query  239  LPSLTALMPGQGFLSQVRNIDLEDLLGRDAVTIDTPHVEALLRGRVVMVTGAGGSIGSEL  298
            +P++  +++G+  +++++++++EDLLGRD+V +D + +   L  + ++VTGAGGSIGSE+
Sbjct  238  MPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEI  297

Query  299  CRQILRFKPAQLVAFDLSEYAMYRLTEELRERFPDQ-HVVPIIGDAKDSLLLDQVMSRYA  357
            CRQ+ +F P +++ ++ +E ++Y + +EL   + ++ + VP+I+D ++   + +VM+ + 
Sbjct  298  CRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFK  357

Query  358  PHIVFHAAAYKHVPLMEELNAWQALRNNVLGTYRVARSAIRHDVRHFVLISTDKAVNPTN  417
            P  V+HAAA KHVPLME  N+ +A+RNN+LGT  VA SA   +V  FV+ISTDKAVNP+N
Sbjct  358  PYAVYHAAAHKHVPLME-YNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSN  416

Query  418  VMGASKRLAEMACQALQQTSEGTQFETVRFGNVLGSAGSVIPKFQQQIAKGGPVTVTHPE  477
            VMGA+KR+AEM  Q+L++ +  T F +VRFGNVLGS GSVIP F++QI  GGPVTVTHPE
Sbjct  417  VMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPE  476

Query  478  ITRFFMTIPEASQLVLQASSMGHGGEIFILDMGEPVKIVDLARDLIRLYGFSEGQIRIEF  537
            +TR+FMTIPEAS+LVLQA+++++GGE+F+LDMG PVKIVDLA++LIRL G  E +I IEF
Sbjct  477  MTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEF  536

Query  538  TGLRPGEKLYEELLADDETTTRTPHPKL---RIAR-AREVPDHLLDELLPWLMQHRVLN  592
            +G+RPGEKLYEELL  +E   +    K+   ++ +  +   D ++++L+  + ++++L+
Sbjct  537  SGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLK  595

234) EUBREC_2619 in NC_012781


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  333 bits (1250),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 239/507 (48%), Positives = 355/507 (71%), Gaps = 22/507 (4%)

Query  139  YIFRLYHSIWRFASINEFMHIIGAFLVLAVVSVTIHEVYEIKMPY-AFWIIGLMLSFALC  197
            Y+F LYH  W +AS++E+M ++ A     VV++ +  +     P+  + +I  M+ + L 
Sbjct  60   YVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLI  119

Query  198  TACRF---AYR--FIRTGQKMLEQRGSANGDEKVMIIGAGNAGRMLIRELIMSSHLHTKA  252
             + R+    YR  FI   ++ +E++++       +++GAG++G +LIRE++ S +++ ++
Sbjct  120  GGSRLFWRVYRRYFI---DNAVEKKAT-------LVVGAGQGGSVLIREMLRSQDMRMQP  169

Query  253  CCIIDDNPAKLG-RFIDGVPIVGNRNDIPEMVEKYDITKIVYAVPSTSGKDRKDILNICK  311
               +DD+  K    + + V + G  +DIPE+V K+ I KI+ A+P+ S K  ++I +IC+
Sbjct  170  VLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICN  229

Query  312  DTGCDVSVVPGIYQMVDGRVSVSNLRPVSIEDLLGRDPVVVDNDGIHSFLQGKVVMVTGG  371
              G ++  +P I +++ G + V+NL+ V +EDLLGRDPV +D   I   L  K ++VTG+
Sbjct  230  IEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGA  289

Query  372  GGSIGSELCRQIAREDPKLLIIFDIYENNAYDIQQELKRKYPYVRVE--TLIGSVRNTNR  429
            GGSIGSE+CRQ+++ DP+ +I+++  EN+ Y I+QEL + Y   R+E   +I+ V+N  R
Sbjct  290  GGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYG-NRIEFVPVIADVQNKTR  348

Query  430  LHYVFQTYHPEIIYHAAAHKHVPLMEESPNEAIKNNVLGTLKLSRIAAEYHVKKFVLIST  489
            +  V + + P  +YHAAAHKHVPLME +P+EAI+NN+LGT +++  A E +V KFV+IST
Sbjct  349  ILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMIST  408

Query  490  DKAVNPTNIMGASKRLCEMVIQMMNRQ-TETDFVAVRFGNVLGSNGSVIPLFKKQIEDGG  548
            DKAVNP+N+MGA+KR+ EMVIQ +N + + T FVAVRFGNVLGS GSVIPLFK+QIE GG
Sbjct  409  DKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGG  468

Query  549  PVTVTDKRIIRYFMTIPEAVALVLQAGLYAHGGEIFVLDMGEPVKIDDMARNLIRLSGLE  608
            PVTVT+  + RYFMTIPEA  LVLQAG  A+GGE+FVLDMG PVKI D+A+NLIRLSG  
Sbjct  469  PVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-K  527

Query  609  PDVDIQIVYTGLRPGEKLYEEMLMSEE  635
             + DI I ++G+RPGEKLYEE+L  +E
Sbjct  528  KEEDIGIEFSGIRPGEKLYEELLNKNE  554

235) EUR_25350 in NC_021010


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  333 bits (1249),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 239/507 (48%), Positives = 356/507 (71%), Gaps = 22/507 (4%)

Query  94   YIFRLYHSIWRFASINEFMHIIGAFLVLTVVSVIIHEVYEIKMPY-AFWIIGLMLSFALC  152
            Y+F LYH  W +AS++E+M ++ A     VV++++  +     P+  + +I  M+ + L 
Sbjct  60   YVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLI  119

Query  153  TACRF---AYR--FIRTGQKMLEQRGSANGDERVMIIGAGNAGRMLIRELIMSSHLHTKA  207
             + R+    YR  FI   ++ +E++++       +++GAG++G +LIRE++ S +++ ++
Sbjct  120  GGSRLFWRVYRRYFI---DNAVEKKAT-------LVVGAGQGGSVLIREMLRSQDMRMQP  169

Query  208  CCIIDDNPAKLG-RFIDGVPIVGNRNDIPEMVEKYDITKIVYAVPSTSGKDRKDILNICK  266
               +DD+  K    + + V + G  +DIPE+V K+ I KI+ A+P+ S K  ++I +IC+
Sbjct  170  VLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICN  229

Query  267  DTGCDVSVVPGIYQMVDGRVSVSNLRPVSIEDLLGRDPVVVDNDGIHSFLQGKVVMVTGG  326
              G ++  +P I +++ G + V+NL+ V +EDLLGRDPV +D   I   L  K ++VTG+
Sbjct  230  IEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGA  289

Query  327  GGSIGSELCRQIAREDPKLLIIFDIYENNAYDIQQELKRKYPYVRVE--TLIGSVRNTNR  384
            GGSIGSE+CRQ+++ DP+ +I+++  EN+ Y I+QEL + Y   R+E   +I+ V+N  R
Sbjct  290  GGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYG-NRIEFVPVIADVQNKTR  348

Query  385  LHYVFQTYHPEIIYHAAAHKHVPLMEESPNEAIKNNVLGTLKLSRIAAEYHVKKFVLIST  444
            +  V + + P  +YHAAAHKHVPLME +P+EAI+NN+LGT +++  A E +V KFV+IST
Sbjct  349  ILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMIST  408

Query  445  DKAVNPTNIMGASKRLCEMVIQMMNRQ-TETDFVAVRFGNVLGSNGSVIPLFKKQIEDGG  503
            DKAVNP+N+MGA+KR+ EMVIQ +N + + T FVAVRFGNVLGS GSVIPLFK+QIE GG
Sbjct  409  DKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGG  468

Query  504  PVTVTDKRIIRYFMTIPEAVALVLQAGLYAHGGEIFVLDMGEPVKIDDMARNLIRLSGLE  563
            PVTVT+  + RYFMTIPEA  LVLQAG  A+GGE+FVLDMG PVKI D+A+NLIRLSG  
Sbjct  469  PVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-K  527

Query  564  PDVDIQIVYTGLRPGEKLYEEMLMSEE  590
             + DI I ++G+RPGEKLYEE+L  +E
Sbjct  528  KEEDIGIEFSGIRPGEKLYEELLNKNE  554

236) ERE_08710 in NC_021044


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  333 bits (1250),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 239/507 (48%), Positives = 356/507 (71%), Gaps = 22/507 (4%)

Query  94   YIFRLYHSIWRFASINEFMHIIGAFLVLTVVSVIIHEVYEIKMPY-AFWIIGLMLSFALC  152
            Y+F LYH  W +AS++E+M ++ A     VV++++  +     P+  + +I  M+ + L 
Sbjct  60   YVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLI  119

Query  153  TACRF---AYR--FIRTGQKMLEQRGSANGDERVMIIGAGNAGRMLIRELIMSSHLHTKA  207
             + R+    YR  FI   ++ +E++++       +++GAG++G +LIRE++ S +++ ++
Sbjct  120  GGSRLFWRVYRRYFI---DNAVEKKAT-------LVVGAGQGGSVLIREMLRSQDMRMQP  169

Query  208  CCIIDDNPAKLG-RFIDGVPIVGNRNDIPEMVEKYDITKIVYAVPSTSGKDRKDILNICK  266
               +DD+  K    + + V + G  +DIPE+V K+ I KI+ A+P+ S K  ++I +IC+
Sbjct  170  VLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICN  229

Query  267  DTGCDVSVVPGIYQMVDGRVSVSNLRPVSIEDLLGRDPVVVDNDGIHSFLQGKVVMVTGG  326
              G ++  +P I +++ G + V+NL+ V +EDLLGRDPV +D   I   L  K ++VTG+
Sbjct  230  IEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGA  289

Query  327  GGSIGSELCRQIAREDPKLLIIFDIYENNAYDIQQELKRKYPYVRVE--TLIGSVRNTNR  384
            GGSIGSE+CRQ+++ DP+ +I+++  EN+ Y I+QEL + Y   R+E   +I+ V+N  R
Sbjct  290  GGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYG-NRIEFVPVIADVQNKTR  348

Query  385  LHYVFQTYHPEIIYHAAAHKHVPLMEESPNEAIKNNVLGTLKLSRIAAEYHVKKFVLIST  444
            +  V + + P  +YHAAAHKHVPLME +P+EAI+NN+LGT +++  A E +V KFV+IST
Sbjct  349  ILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMIST  408

Query  445  DKAVNPTNIMGASKRLCEMVIQMMNRQ-TETDFVAVRFGNVLGSNGSVIPLFKKQIEDGG  503
            DKAVNP+N+MGA+KR+ EMVIQ +N + + T FVAVRFGNVLGS GSVIPLFK+QIE GG
Sbjct  409  DKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGG  468

Query  504  PVTVTDKRIIRYFMTIPEAVALVLQAGLYAHGGEIFVLDMGEPVKIDDMARNLIRLSGLE  563
            PVTVT+  + RYFMTIPEA  LVLQAG  A+GGE+FVLDMG PVKI D+A+NLIRLSG  
Sbjct  469  PVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-K  527

Query  564  PDVDIQIVYTGLRPGEKLYEEMLMSEE  590
             + DI I ++G+RPGEKLYEE+L  +E
Sbjct  528  KEEDIGIEFSGIRPGEKLYEELLNKNE  554

237) Metme_1198 in NC_015572


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  333 bits (1248),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 207/441 (47%), Positives = 326/441 (74%), Gaps = 8/441 (1%)

Query  126  VYR-FWKERDIVERIGLRALIVGAGAAGDMLVRDLLSNPNSGYIPVLFADDQAGKLNREI  184
            VYR +  +  +  +    +L+VGAG +G +L+R++L + +    PVL  DD+  K +  I
Sbjct  128  VYRRYFIDNAVEKKA---TLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTI  184

Query  185  RG-IRVAGRIEQIPALIEQWEVEVVLIAIPSATDTQMRRIVEICESSKVRFQTLPSVKEL  243
               ++V G +E+IP L+ +  +  ++IAIP+ ++ ++  I  IC+   V +  +P++ ++
Sbjct  185  TERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDV  244

Query  244  LSGAVTKASLRNVSITDILGRDPVWLDWHGIQASLHDKTILVTGGGGSIGSELCKQLAKI  303
            LSG +   +L++V + D+LGRDPV LD   I   L +KTILVTG+GGSIGSE+C+Q++K+
Sbjct  245  LSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKF  304

Query  304  QPRNLIVFDQCEFNLYKIDAELSRHY-PQLPHLAILGDVTQALAVQQIIDSQKPDVIFHA  362
            +P+++I++++ E ++Y I+ ELS+ Y  ++  +++++DV +   + ++++  KP  ++HA
Sbjct  305  DPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHA  364

Query  363  AAYKHVPLLEGQAREAVHNNLIGTKIVAEAAIASNVARFVLISTDKAVNPTNVMGATKRA  422
            AA KHVPL+E +++EA++NN++GTK VAE+A  ++V++FV+ISTDKAVNP+NVMGATKR 
Sbjct  365  AAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRI  424

Query  423  AEILCQNL-DKASNTRFTTVRFGNVLDSAGSVVPLFREQIRAGGPVTVTHPDITRYFMTI  481
            AE++ Q+L +  S+T F +VRFGNVL+S GSV+PLF++QI +GGPVTVTHP++TRYFMTI
Sbjct  425  AEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTI  484

Query  482  PEACQLIMLAETVGKGGEVFVLDMGEPVKIVYLAEQMIRLSGKVPGKDIHIEFVGLRPGE  541
            PEA +L++ A ++++GGEVFVLDMG PVKIV LA ++IRLSGK    DI IEF G+RPGE
Sbjct  485  PEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGK-KEEDIGIEFSGIRPGE  543

Query  542  KLYEELFHHEEQLMETGYSKL  562
            KLYEEL++ +E   +  Y K+
Sbjct  544  KLYEELLNKNEIHPQQVYEKI  564

238) Ctha_2155 in NC_011026


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  333 bits (1249),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 256/564 (46%), Positives = 401/564 (72%), Gaps = 16/564 (2%)

Query  13   IDSAIIFLSTFIAYTLRLEPIQADYFFPALVVSIITFPIKTGI-GFLFGLYRQSWHNVGV  71
            IDS I+ +S F++Y++ LEP   +Y +  LV+S + + +   I +++F LY+++W+  +V
Sbjct  16   IDSFIVTFSVFLGYAI-LEPYFKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEYASV  74

Query  72   KDLSAIIK-FAAGYTLISLVIRALLSELIFWPISIAFIEAMILIFGLSLIRLTRRVVYSQ  130
             +L +++K  +++  +  L++  L+SE  F  + + FI  M+ ++ ++  RL +RV Y  
Sbjct  75   SELMSVLKAVTSSIVVTLLLVSLLISESPF--LRLYFITWMMHLLLIGGSRLFWRV-Y--  129

Query  131  RKKALIKSKDKVQKR-VLVIGAGEAGTFIVREMQRHPESGLLPIGFLDDDVIKQKQNFLG  189
             ++ +I   + V+K+  LV+GAG++G+ ++REM R  +  + P+  +DDD  KQK  +  
Sbjct  130  -RRYFID--NAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITE  186

Query  190  -LPVFGALYDLKQVVDAEDIDQVLIAIPSVTGDVITKVVHDAQEASVQYRTIPGFHELLS  248
             + V G + D+ ++V    I +++IAIP+++   +  +    +  +V+   +P ++++LS
Sbjct  187  RVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLS  246

Query  249  GQASMSQIREVDVQDLLRRKPVQLDLALIAHYLKDQIVLVSGAGGSIGSEIVRQVVRFNP  308
            G+  +++++ V+V+DLL R PV+LD+ALI++ L ++ +LV+GAGGSIGSEI RQV +F+P
Sbjct  247  GELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDP  306

Query  309  RKLILVGRGENSLYLISEELQKNF-HGLNFLCKVIDVRDRNSLEHLFSREQPNVVFHAAA  367
            +K+IL+G+GENS+Y I +EL K + + ++F+  + DV+++  + ++ +  +P  V+HAAA
Sbjct  307  QKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAA  366

Query  368  HKHVPLMELAPEQAVLNNVGGTKNLVELALKYKVSCFVNISTDKAVNPTSVMGATKRVAE  427
            HKHVPLME  P++A+ NN+ GTKN+ E A    VS FV ISTDKAVNP++VMGATKR+AE
Sbjct  367  HKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAE  426

Query  428  YTVELASRQAQSNQRFVSVRFGNVLGSRGSVIPKFKQQILSGGPVTVTHPEMVRFFMTIP  487
              ++ +  + +S+  FV+VRFGNVLGSRGSVIP FK+QI SGGPVTVTHPEM R+FMTIP
Sbjct  427  MVIQ-SLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIP  485

Query  488  EASQLVLQAGGIGQNGEVYVLDMGEPVKIVDMATELIKLSGLVPNKDIRIEFTGIRPGEK  547
            EAS+LVLQAG+++Q GEV+VLDMG PVKIVD+A +LI+LSG   + DI IEF+GIRPGEK
Sbjct  486  EASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIGIEFSGIRPGEK  544

Query  548  LYEELLTSEEGTNSTHHEKIYVAK  571
            LYEELL  +E       EKIY +K
Sbjct  545  LYEELLNKNEIHPQQVYEKIYRGK  568

239) CLM_3515 in NC_012563


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  333 bits (1249),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 241/529 (46%), Positives = 367/529 (70%), Gaps = 26/529 (4%)

Query  59   FNKIFNLYSSIWKYASVEELMsiiysvsisniifiiysyfinyKILESNYYRFPFTVHII  118
            F  +FNLY   W YASV ELMS++ +V+ S ++ ++   ++     ES + R+ F    I
Sbjct  58   FAYVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLIS---ESPFLRLYF----I  110

Query  119  FWILSIVSLGGTRFIYRV-----IEDKESNKNKCNCDSKEKKlliigagdaaaliiKEIK  173
             W++ ++ +GG+R++ RV     I++   +K     ++ +          +++++I+E+ 
Sbjct  111  TWMMHLLLIGGSRLFWRVYRRYFIDNAVEKKATLVVGAGQ----------GGSVLIREML  160

Query  174  RNKELNYNIIGLIDDDIEKLGKRING-IPVLGGRESIIRMSKNKKIDEIILAIPSASSAT  232
            R++++  + +  +DDD +K    I   + V G  E I  + K+ +I  II+AIP+ S   
Sbjct  161  RSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKR  220

Query  233  KSEIVSICKETSCKLKTLPSMDKVIQGKFNMSKLRDVSIEDLLGREEVKLDDSCINKYIK  292
             +EI  IC+  +  L  +P+++ V+ G +++++L+ V +EDLLGR+ V LD + I++ + 
Sbjct  221  LNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELT  280

Query  293  DKVVLVTGGGGSIGSELCRQIVKFSPKKLLILDIYENNVYDVQMELNYKYPE-LDKAVII  351
            +K +LVTG+GGSIGSE+CRQ+ KF P+K+++L+  EN++Y ++ EL+  Y + ++   +I
Sbjct  281  NKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVI  340

Query  352  ASIRDEKRLKDIFSLYKPDVVFHAAAHKHVPLMEENPAESIKNNVIGTYNLIKCAHEFGI  411
            A +++  R+ ++ + +KP  V+HAAAHKHVPLME NP E+I+NN++GT N+   A E  +
Sbjct  341  ADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEV  400

Query  412  ERFVQISTDKAVNPTNIMGATKRFCEIMIQAF-DKISKTEFVAVRFGNVLGSNGSVIPLF  470
             +FV ISTDKAVNP+N+MGATKR+ E++IQ++ +  SKT FVAVRFGNVLGS GSVIPLF
Sbjct  401  SKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLF  460

Query  471  KKQITHGGPVTVTHPEINRYFMTIPEAAQLVIQAGAMAKGGEIFVLDMGKPVKIVDLAKD  530
            K+QI  GGPVTVTHPE+ RYFMTIPEA++LV+QAGA+A+GGE+FVLDMGKPVKIVDLAK+
Sbjct  461  KNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKN  520

Query  531  LITLSGYKPGEDIKIEYTGLRPGEKLYEELLMDEIALTSTGHNKIFVEK  579
            LI LSG K  EDI IE++G+RPGEKLYEELL  +        +KI+  K
Sbjct  521  LIRLSG-KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGK  568

240) CBF_3157 in NC_017297


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  332 bits (1247),  Expect = 3e-92, Method: Compositional matrix adjust.
 Identities = 247/540 (46%), Positives = 375/540 (70%), Gaps = 20/540 (3%)

Query  65   LYSSIWKYASVEELMsiiysvsisniifiiysyfinyKILESNYYRFPFTVHIIFWILSI  124
            LY   W YASV ELMS++ +V+ S ++ ++   ++     ES + R+ F      W++ +
Sbjct  64   LYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLIS---ESPFLRLYFIT----WMMHL  116

Query  125  VSLGGTRFIYRVIEDKECNKNKCNCDSKEKKlliigagdaaaliiKEIKRNKELNYNIIG  184
            + +GG+R++ RV       +   +     K  L++GAG++++++I+E+ R++++  + + 
Sbjct  117  LLIGGSRLFWRV-----YRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVL  171

Query  185  LIDDDTEKLGKRING-IPVLGGRESIIRMSKNKKIDEIILAIPSASSATRSEIVSICKET  243
             +DDD +K    I   + V G  E I  + K+ +I  II+AIP+ S    +EI  IC+  
Sbjct  172  AVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIE  231

Query  244  SCKLKTLPSMDKVIQGKFNISKLRDVSIEDLLGRDEVKLDDRGINKYIKDKVVLVTGGGG  303
            +  L  +P+++ V+ G +++++L+ V +EDLLGRD V LD   I++ + +K +LVTG+GG
Sbjct  232  GVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGG  291

Query  304  SIGSELCRQIVKFSPKKLLILDIYENNVYDVQMELNYKYPE-LDKAVIIASIRDEKRLRD  362
            SIGSE+CRQ+ KF P+K+++L+  EN++Y ++ EL+  Y + ++   +IA +++  R+ +
Sbjct  292  SIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILE  351

Query  363  IFSSYKPDVVFHAAAHKHVPLMEENPAESIKNNVIGTYNLIKCAHEFGTERFVQISTDKA  422
            + + +KP  V+HAAAHKHVPLME NP E+I+NN++GT N+   A E    +FV ISTDKA
Sbjct  352  VMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKA  411

Query  423  VNPTNIMGATKRFCEIMIQAF-DKISKTEFVAVRFGNVLGSNGSVIPLFKKQIAHGGPVT  481
            VNP+N+MGATKR+ E++IQ++ +  SKT FVAVRFGNVLGS GSVIPLFK+QI  GGPVT
Sbjct  412  VNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVT  471

Query  482  VTHPEINRYFMTIPEAAQLVIQAGAMAKGGEIFVLDMGKPVKIVDLAKDLITLSGYKPGE  541
            VTHPE+ RYFMTIPEA++LV+QAGA+A+GGE+FVLDMGKPVKIVDLAK+LI LSG K  E
Sbjct  472  VTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEE  530

Query  542  DIKIEYTGLRPGEKLYEELLMDEIALTSTGHNKIF---VEKPMENNIDF-VEKSIEEFKK  597
            DI IE++G+RPGEKLYEELL  +        +KI+   V+  +  ++D+ VE  I++F K
Sbjct  531  DIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSK  590

241) CLI_3168 in NC_009699


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  332 bits (1247),  Expect = 3e-92, Method: Compositional matrix adjust.
 Identities = 247/540 (46%), Positives = 375/540 (70%), Gaps = 20/540 (3%)

Query  65   LYSSIWKYASVEELMsiiysvsisniifiiysyfinyKILESNYYRFPFTVHIIFWILSI  124
            LY   W YASV ELMS++ +V+ S ++ ++   ++     ES + R+ F      W++ +
Sbjct  64   LYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLIS---ESPFLRLYFIT----WMMHL  116

Query  125  VSLGGTRFIYRVIEDKECNKNKCNCDSKEKKlliigagdaaaliiKEIKRNKELNYNIIG  184
            + +GG+R++ RV       +   +     K  L++GAG++++++I+E+ R++++  + + 
Sbjct  117  LLIGGSRLFWRV-----YRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVL  171

Query  185  LIDDDTEKLGKRING-IPVLGGRESIIRMSKNKKIDEIILAIPSASSATRSEIVSICKET  243
             +DDD +K    I   + V G  E I  + K+ +I  II+AIP+ S    +EI  IC+  
Sbjct  172  AVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIE  231

Query  244  SCKLKTLPSMDKVIQGKFNISKLRDVSIEDLLGRDEVKLDDRGINKYIKDKVVLVTGGGG  303
            +  L  +P+++ V+ G +++++L+ V +EDLLGRD V LD   I++ + +K +LVTG+GG
Sbjct  232  GVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGG  291

Query  304  SIGSELCRQIVKFSPKKLLILDIYENNVYDVQMELNYKYPE-LDKAVIIASIRDEKRLRD  362
            SIGSE+CRQ+ KF P+K+++L+  EN++Y ++ EL+  Y + ++   +IA +++  R+ +
Sbjct  292  SIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILE  351

Query  363  IFSSYKPDVVFHAAAHKHVPLMEENPAESIKNNVIGTYNLIKCAHEFGTERFVQISTDKA  422
            + + +KP  V+HAAAHKHVPLME NP E+I+NN++GT N+   A E    +FV ISTDKA
Sbjct  352  VMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKA  411

Query  423  VNPTNIMGATKRFCEIMIQAF-DKISKTEFVAVRFGNVLGSNGSVIPLFKKQIAHGGPVT  481
            VNP+N+MGATKR+ E++IQ++ +  SKT FVAVRFGNVLGS GSVIPLFK+QI  GGPVT
Sbjct  412  VNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVT  471

Query  482  VTHPEINRYFMTIPEAAQLVIQAGAMAKGGEIFVLDMGKPVKIVDLAKDLITLSGYKPGE  541
            VTHPE+ RYFMTIPEA++LV+QAGA+A+GGE+FVLDMGKPVKIVDLAK+LI LSG K  E
Sbjct  472  VTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEE  530

Query  542  DIKIEYTGLRPGEKLYEELLMDEIALTSTGHNKIF---VEKPMENNIDF-VEKSIEEFKK  597
            DI IE++G+RPGEKLYEELL  +        +KI+   V+  +  ++D+ VE  I++F K
Sbjct  531  DIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSK  590

242) Mfla_1278 in NC_007947


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  332 bits (1247),  Expect = 3e-92, Method: Compositional matrix adjust.
 Identities = 207/451 (46%), Positives = 333/451 (74%), Gaps = 12/451 (2%)

Query  132  MGGSRFAYRAWKE-HRLYGSAQFSGKPVLVLGAGEAAIALLKDLSKSREWHVVGLL--DD  188
            +GGSR+    W+  +R +       K+ LV+GAG+++  L++++ +S++ ++  +L  DD
Sbjct  119  IGGSRLF---WRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDD  175

Query  189  KKTMHGRELLG-VNVLGSIAQLPQIAADLSVNHVIVAMPSARHQRRREIVELASRNGLTA  247
             K  +   +   V+V G + ++P++   + ++ +I+A+P+  ++R  EI  + + +G+  
Sbjct  176  DKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVEL  235

Query  248  LTVPSFDDLMSGHLSMAQIRPVEVEDLLGREPVSLDGEGLQHLIEGQVLLITGAGGSIGS  307
            + +P+++D++SG+L + +++ VEVEDLLGR+PV LD   + + +  + +L+TGAGGSIGS
Sbjct  236  FKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGS  295

Query  308  ELCRQVLKYRPACLVCLDQSEYALYRLEQEFDNLEFDTRIEYV--VGDVRNARRVGQVLG  365
            E+CRQV K+ P  ++ L+++E ++Y ++QE+ +  ++ RIE+V  ++DV+N  R+ +V+ 
Sbjct  296  EICRQVSKFDPQKIILLGHGENSIYSIHQELSK-TYGNRIEFVPVIADVQNKTRILEVMN  354

Query  366  RYMPKLVFHAAAYKHVPLMENRNVAESLSNNVSGTYTLAQACKTAGVAKFVLISTDKAVN  425
             + P  V+HAAA KHVPLME  N  E++ NN+ GT  +A++ K + V+KFV+ISTDKAVN
Sbjct  355  EFKPYAVYHAAAHKHVPLMEY-NPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVN  413

Query  426  PTNVMGASKRLAEMICQGLQEESG-TRFIVVRFGNVLGSSGSVIPKFREQIAAGGPITVT  484
            P+NVMGA+KR+AEM+ Q+L+E+++ T F+ VRFGNVLGS GSVIP F++QI +GGP+TVT
Sbjct  414  PSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVT  473

Query  485  HPEITRYFMSIPEACQLVMQAGLMGGGGEIFVLDMGDPVRIVDLARDMIRLSGLNEDDIQ  544
            HPE+TRYFM+IPEA +LV+QAG ++ GGE+FVLDMG PV+IVDLA+++IRLSG +E+DI 
Sbjct  474  HPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIG  533

Query  545  IVYSGLRPGEKLYEELLADDELTVPTPHDKL  575
            I +SG+RPGEKLYEELL  +E+      +K+
Sbjct  534  IEFSGIRPGEKLYEELLNKNEIHPQQVYEKI  564

243) capD in NC_021033


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  332 bits (1245),  Expect = 4e-92, Method: Compositional matrix adjust.
 Identities = 221/457 (49%), Positives = 342/457 (75%), Gaps = 10/457 (2%)

Query  116  LLLVFIMGGARFVWRAVNEYRKSYTVHS-KAKPVIIVGAGEAGIMLMRELDRSSVWR---  171
            ++ ++++GG+R+ WR    YR+ +  ++   K+ ++VGAG++G +L+RE+ RS   R   
Sbjct  113  MMHLLLIGGSRLFWRV---YRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQP  169

Query  172  VVAllddderklglellgrrvvgSTKDLAESLKEYGAKHVIIAIPSAAHEVMQNVTNIAL  231
            V+A+ DD +++        +V G   D++E +K +  K +IIAIP+ ++  ++++ +I  
Sbjct  170  VLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICN  229

Query  232  NAGAAVFTVPNLEDLMSGRVAINAMRPVNIEDLLGRDAVELDTANISELISNKCVLVSGA  291
              G  +F +PN+ED++SG + +N ++ V++EDLLGRD+VELD A IS  ++NK +LV+GA
Sbjct  230  IEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGA  289

Query  292  GGSIGSELCRQIAKYKPQKLVLVELSEFALYTIEQWFSDNCCE-TQIIPLTADVKNYARM  350
            GGSIGSE+CRQ++K+ PQK++L+  +E ++Y+I+Q +S    +  +++P+ ADV+N +R+
Sbjct  290  GGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRI  349

Query  351  KAIFEQHRPSLVFHAAAYKHVPLMEVSNAFEAIRNNSFGTYNLAKVSVETGVRRFVLIST  410
              + ++ +P  V+HAAA KHVPLME  N+ EAIRNN +GT N+A  + E  V +FV+IST
Sbjct  350  LEVMNEFKPYAVYHAAAHKHVPLME-YNPHEAIRNNILGTKNVAESAKEGEVSKFVMIST  408

Query  411  DKAVNPTNVMGATKRLAEKLLERMQTFHGQTTTFNMVRFGNVLGSTGSVIPKFQKQIQKG  470
            DKAVNP+NVMGATKR+AE +++ ++  +   T+F  VRFGNVLGS GSVIP F++QI+ G
Sbjct  409  DKAVNPSNVMGATKRIAEMVIQSLNE-DNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESG  467

Query  471  GPITVTHPEINRYFMSIPEAAQLVIQAATMGQGGEVFVLDMGKPVRIVDLAKNMIRLSGF  530
            GP+TVTHPE+ RYFM+IPEA++LV+QA++++QGGEVFVLDMGKPV+IVDLAKN+IRLSG 
Sbjct  468  GPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGK  527

Query  531  TEDQIAIEYTGLRPGEKLYEELMADEETTSATSHGKL  567
             E++I+IE++G+RPGEKLYEEL+  +E  +     K+
Sbjct  528  KEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKI  564

244) capD2 in NC_014355


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  332 bits (1244),  Expect = 5e-92, Method: Compositional matrix adjust.
 Identities = 225/495 (46%), Positives = 343/495 (70%), Gaps = 7/495 (1%)

Query  65   FRLYGTVWQYTSLWDLGNIVGATLSGSIVFFLVTRYGLGQTAYPRTVYLIDALLLIVLTG  124
            F LY   W+Y+S+ +L +++ A  S+ +V +L+    ++++++ R +Y+I  ++ ++L G
Sbjct  62   FNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLR-LYFITWMMHLLLIG  120

Query  125  GMRVARRV--GYPSSSNGDMKRVLIYGAGDAGERLVRELRQNKAFGYQPVGFIDDNRRKA  182
            G R+ +RV   Y   +  + K  L+ GAG++G  L+RE+ +++    QPV  +DD++ K 
Sbjct  121  GSRLFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQ  180

Query  183  GQRIHG-VKVLGTRAQLPGIMERVKPDTILIAMPSIGATATREIAKALLAYNVSIKILPD  241
               I   VKV G   ++P ++ + +   I+IA+P+++     EI K      V +  +P+
Sbjct  181  KMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPN  240

Query  242  LSVLLDGKSEVNQLRNLSVEDLLHRPRVDLDRSLTATLLKGKRVLVTGAGGSIGSELCRQ  301
            +  +L G  EVN+L+++ VEDLL R  V+LD +L +  L  K +LVTGAGGSIGSE+CRQ
Sbjct  241  IEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQ  300

Query  302  IASYAPECLILFERYENGLYAIHSELGPRTAPPHIY-PVIGDVTDADRLRSTMEAYQPQI  360
            ++ + P+ +IL+ + EN++Y+IH EL+   +    + PVI+DV +  R+   M+ ++P  
Sbjct  301  VSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYA  360

Query  361  VFHAAAHKHVPLMEYNPCEAVKNNIIGTRTVAALSEEFGVERFIMISTDKAVRPSSVMGA  420
            V+HAAAHKHVPLMEYNP EA++NNI+GT+ VA  + E  V +F+MISTDKAV PS+VMGA
Sbjct  361  VYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGA  420

Query  421  TKRVAELIIQDMAR-TGKTNFITVRFGNVLGSNGSVVPHFLQQIKRGGPVTVTHPDVQRY  479
            TKR+AE++IQ +    +KT+F++VRFGNVLGS GSV+P F +QI  GGPVTVTHP++ RY
Sbjct  421  TKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRY  480

Query  480  FMLIPEAVELVLQAASLANPGAVYVLEMGEQVRLQDLARHLIRLSGFVPEQEIPICFTGL  539
            FM IPEA  LVLQA++LA+ G V+VL+MG  V++ DLA++LIRLSG   E++I I F+G+
Sbjct  481  FMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIGIEFSGI  539

Query  540  RPGEKLAEELVGPDE  554
            RPGEKL EEL+  +E
Sbjct  540  RPGEKLYEELLNKNE  554

245) BC1001_0685 in NC_015136


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  331 bits (1243),  Expect = 5e-92, Method: Compositional matrix adjust.
 Identities = 227/508 (45%), Positives = 356/508 (71%), Gaps = 9/508 (1%)

Query  63   YGLYRGMWVFASLPDLVRIAKAIGVGALVVMIASALLQPAPIVPRSVLIVSPMLLFLAMG  122
            + LY+  W +AS+++L+ + KA+  + +V ++  +LL + +   R + +++ M+ +L +G
Sbjct  62   FNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLR-LYFITWMMHLLLIG  120

Query  123  GSRAIYRAAKEFYRYGGLVGQGKPVLVLGAGNAGANLVRELKRSGEWRLAGLL--DDDPV  180
            GSR + R  + ++   ++  + K+ LV+GAG++G+ L+RE+ RS + R+  +L  DDD  
Sbjct  121  GSRLFWRVYRRYFIDNAV--EKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKN  178

Query  181  KQGREIYG-YRVLGSISDLQKITADLKVEHVIIAVPSASVEAHRRIATLCVRAGVRAMTL  239
            KQ   I    +V G + D+  +   +++  +IIA+P+ S      I  +C   GV    +
Sbjct  179  KQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKM  238

Query  240  PALTPLTQGQAFLSRVRQIDLEDLLGRDPVMIDTDHVEALLKNRVVMVTGAGGSIGSELC  299
            P +  +  G+  ++ ++++++EDLLGRDPV +D   +   L N+ ++VTGAGGSIGSE+C
Sbjct  239  PNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEIC  298

Query  300  RQILRFGPVQLVAFDISEFSIYRLNEELSDKYPE-VSVVPIIGDVKDSLLLDQVMARYTP  358
            RQ+ +F+P +++ ++ +E SIY +++ELS  Y + +  VP+I+DV++   + +VM  + P
Sbjct  299  RQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKP  358

Query  359  HIVFHAAAYKHVPLMEEVNAWQAVRNNVLGTYRVARAAIRHDVAHFVLISTDKAVNPTNV  418
              V+HAAA KHVPLME  N+ +A+RNN+LGT  VA +A   +V+ FV+ISTDKAVNP+NV
Sbjct  359  YAVYHAAAHKHVPLME-YNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNV  417

Query  419  MGASKRLAEMVCSSLQQQGTRRTQFETVRFGNVLGSAGSVIPKFQEQIARGGPVTVTHPE  478
            MGA+KR+AEMV  SL+++ ++ T F +VRFGNVLGS GSVIP F++QI  GGPVTVTHPE
Sbjct  418  MGATKRIAEMVIQSLNEDNSK-TSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPE  476

Query  479  ITRFFMTIPEASQLVLQASSMGQGGEIFILDMGKPVRIADLAHDLIRLYGFTEEQIRVVY  538
            +TR+FMTIPEAS+LVLQA++++QGGE+F+LDMGKPV+I DLA +LIRL G  EE+I + +
Sbjct  477  MTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEF  536

Query  539  TGLRPGEKLYEELLADDETTTRTPHPKL  566
            +G+RPGEKLYEELL  +E   +    K+
Sbjct  537  SGIRPGEKLYEELLNKNEIHPQQVYEKI  564

246) BTI_934 in NC_021173


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  331 bits (1243),  Expect = 6e-92, Method: Compositional matrix adjust.
 Identities = 230/539 (43%), Positives = 378/539 (71%), Gaps = 12/539 (2%)

Query  62   VFGLYRGLWVFASLPDLMRISKALagggiivmigavmFQPVPIIPRSVlllsplllflIM  121
            VF LY+  W +AS+++LM + KA++++ ++ ++   ++ + + + R + +++ ++ +L++
Sbjct  61   VFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLR-LYFITWMMHLLLI  119

Query  122  GGARALYRATKEFYLYGGLVGEGKPLLVLGAGTAGANLARELSRSGEWRLVGLL--DDDI  179
            GG+R + R  + +++  ++  E K+ LV+GAG +G+ L RE+ RS + R+  +L  DDD 
Sbjct  120  GGSRLFWRVYRRYFIDNAV--EKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDK  177

Query  180  AKQGREIYG-YKVLGSINDLPHWTETMKIEYAIIAIPSASVEAQRRVATLCVRAGVKAMV  238
             KQ   I    KV G ++D+P+     +I   IIAIP+ S      +  +C   GV    
Sbjct  178  NKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFK  237

Query  239  LPSLTALMPGQGILSQIRQIDLEDLLGREAVTIDTPHVEALLRGRVVMVTGAGGSIGSEL  298
            +P++  +++G+  +++++++++EDLLGR++V +D + +   L  + ++VTGAGGSIGSE+
Sbjct  238  MPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEI  297

Query  299  CRQILKFQPAQLIAFDLSEYAMYRLTEELRERFPD-LPVVPIIGDAKDSLLLDQVMSRYA  357
            CRQ+ KF+P ++I ++ +E ++Y + +EL   + + +  VP+I+D ++   + +VM+ + 
Sbjct  298  CRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFK  357

Query  358  PHIVFHAAAYKHVPLMEELNAWQALRNNVLGTYRVARAAIRHDVKHFVLISTDKAVNPTN  417
            P  V+HAAA KHVPLME  N+ +A+RNN+LGT  VA +A   +V  FV+ISTDKAVNP+N
Sbjct  358  PYAVYHAAAHKHVPLME-YNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSN  416

Query  418  VMGASKRLAEMACQALQQTSARTQFETVRFGNVLGSAGSVIPKFQQQIAKGGPVTVTHPE  477
            VMGA+KR+AEM  Q+L++ +++T F +VRFGNVLGS GSVIP F++QI  GGPVTVTHPE
Sbjct  417  VMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPE  476

Query  478  ITRFFMTIPEASQLVLQASSMGQGGEIFILDMGEPVKIVDLARDLIRLYGFTEDHIRIEF  537
            +TR+FMTIPEAS+LVLQA++++QGGE+F+LDMG PVKIVDLA++LIRL G  E++I IEF
Sbjct  477  MTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEF  536

Query  538  SGLRPGEKLYEELLADDETTTRTPHPKLRTAKA----REVPDHLLDELLPWLMQHRVLS  592
            SG+RPGEKLYEELL  +E   +    K+  +K     +   D ++++L+  + ++++L 
Sbjct  537  SGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLK  595

247) Amico_1715 in NC_014011


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  330 bits (1237),  Expect = 2e-91, Method: Compositional matrix adjust.
 Identities = 221/465 (48%), Positives = 339/465 (73%), Gaps = 4/465 (0%)

Query  137  TGINKKRTLIVGAGDAGTMIAREIFRHPESGLVPVGFLDDDPSKKETRFLG-LDVFGPIG  195
             +++KK TL+VGAG++G+++ RE++R  +  + PV  +DDD +K+   +   + V G + 
Sbjct  136  NAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVE  195

Query  196  DLRQVVRGHSIEEVIIAMPSAPGTTVRRIVELAKKAKVQYRIIPGIYEVISGKVSISLLR  255
            D+ ++V+   I  +IIA+P+ +   +  I  + +   V+   +P I +V+SG + ++ L+
Sbjct  196  DIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLK  255

Query  256  PVDVEDLLRREPVRLDIDSIAGYLSSKVVLVTGAGGSIGSEICRQICHFSPKLLILLGRG  315
             V+VEDLL R+PV LD+  I+  L++K +LVTGAGGSIGSEICRQ+  F P+ +ILLG+G
Sbjct  256  KVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHG  315

Query  316  ENSLFNIEREMKANYSH-IPYVTMVADVRNIHKIEHIFEQYRPEVVFHAAAHKHVPMMET  374
            ENS+++I++E+   Y++ I +V ++ADV+N  +I ++ ++++P  V+HAAAHKHVP+ME 
Sbjct  316  ENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEY  375

Query  375  NPDEAILNNIGGTQNLVKNALRFNTSYFVNISTDKAVNPTSIMGASKRVAEMVVRKAAIE  434
            NP+EAI NNI GT+N+  +A   + S FV ISTDKAVNP+++MGA+KR+AEMV++    E
Sbjct  376  NPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLN-E  434

Query  435  AKEGQHFISVRFGNVLGSRGSVVPIFREQIRKGGPITITHPEMTRYFMTIPEAAQLVLQA  494
             +    F++VRFGNVLGSRGSV+P+F++QI  GGP+T+THPEMTRYFMTIPEA++LVLQA
Sbjct  435  DNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQA  494

Query  495  GGMNKNGQVFVLDMGEPVKIVDLAKDIIRLSGFEPEEIEIVYTGVRPGEKLYeelltaee  554
            G++ + G+VFVLDMG PVKIVDLAK++IRLSG   E+I I ++G+RPGEKLYEELL  +E
Sbjct  495  GALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNE  554

Query  555  gttatHHKKIYEAKSND-LPADLDAKLAGLFETAASGNNEDICKR  598
                    KIY +K ++ + +++D  + +L++  +  +   I +R
Sbjct  555  IHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLKIANR  599

248) LBF_4128 in NC_010845


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  329 bits (1234),  Expect = 3e-91, Method: Compositional matrix adjust.
 Identities = 233/507 (46%), Positives = 358/507 (71%), Gaps = 20/507 (3%)

Query  57   FLFSGIYRSLWSYASLHDLLAIIKATILSSLVSTLALLF------YNRFYQLSRMVPILD  110
            ++F+ +Y+  W YAS+ +L++++KA   S +V+ L + +      + R+Y +++M+ +L 
Sbjct  60   YVFN-LYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLL-  117

Query  111  TLILLGFLCLRSLSWRMLREQIFSSDRTRKGTPILLVGAGKLGSTFLTEIRRNVDLDYLP  170
               L+G      L WR+ R  ++ +   +K+T  L+VGAG+ GS ++ E+ R+ D+   P
Sbjct  118  ---LIG---GSRLFWRVYRRYFIDNAVEKKAT--LVVGAGQGGSVLIREMLRSQDMRMQP  169

Query  171  VGFLDDNVSK-KGGYIQGIPILGSTDEIGKVLLRYGIKKVIMTVPQPDGRVVSKLMKECE  229
            V  +DD+ +K K    + + + G  ++I  ++ ++ IKK+I+++P    + ++ + K C+
Sbjct  170  VLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICN  229

Query  230  GAGVDFKILPTFGEYLAEKPNITQLREVQVEDLLGRPTVDLEIESIRSYLEKKVILVTGA  289
              GV++  +P + + L+   ++ +L+ V+VEDLLGR  V+L++  I   L +K ILVTGA
Sbjct  230  IEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGA  289

Query  290  GGSIGSEICRQVALFKPSVLVILDAAETPLYEIDYELRKKFSEFNIDIRPVIADVKNLSR  349
            GGSIGSEICRQV+ F P  +++L+ +E ++Y I+ EL K +++  I++ PVIADV+N +R
Sbjct  290  GGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGN-RIEFVPVIADVQNKTR  348

Query  350  ISAVFEEHRPSVVFHSAAYKHVPMMEINPSEAILNNVMGTKNVADVCRLIGVERFVLIST  409
            I  V +E +P  V+H+AA KHVP+ME NP EAI NN++GTKNVA+  +   V +FV+IST
Sbjct  349  ILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMIST  408

Query  410  DKAVNPVNVMGASKRAAEIYLQHISQ-NSRIKFITVRFGNVLGSNGSVIPRFREQIKRGG  468
            DKAVNP NVMGA+KR AE+ +Q +++ NS+  F++VRFGNVLGS GSVIP F++QI  GG
Sbjct  409  DKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGG  468

Query  469  PVTVTHPEVIRYFMTIPEATQLVLQAGSMGEHGEIFLLDMGEPVRILSLAEEMIRLSGYT  528
            PVTVTHPE+ RYFMTIPEA++LVLQAG++++ GE+F+LDMG PV+I+ LA ++IRLSG  
Sbjct  469  PVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKK  528

Query  529  PYKDINIEFSGLRPGEKLYEELLLNAE  555
               DI IEFSG+RPGEKLYEELL + E
Sbjct  529  E-EDIGIEFSGIRPGEKLYEELLNKNE  554

249) capD in NC_010843


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  329 bits (1233),  Expect = 3e-91, Method: Compositional matrix adjust.
 Identities = 233/508 (46%), Positives = 358/508 (71%), Gaps = 20/508 (3%)

Query  87   VFLFSGIYRSLWSYASLHDLLAIIKATILSSLVSTLALLF------YNRFYQLSRMVPIL  140
             ++F+ +Y+  W YAS+ +L++++KA   S +V+ L + +      + R+Y +++M+ +L
Sbjct  59   AYVFN-LYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLL  117

Query  141  DTLILLGFLCLRSLSWRMLREQIFSSDRTRKGTPILLVGAGKLGSTFLTEIRRNVDLDYL  200
                L+G      L WR+ R  ++ +   +K+T  L+VGAG+ GS ++ E+ R+ D+   
Sbjct  118  ----LIG---GSRLFWRVYRRYFIDNAVEKKAT--LVVGAGQGGSVLIREMLRSQDMRMQ  168

Query  201  PVGFLDDNVSK-KGGYIQGIPILGSTDEIGKVLLRYGIKKVIMTVPQPDGRVVSKLMKEC  259
            PV  +DD+ +K K    + + + G  ++I  ++ ++ IKK+I+++P    + ++ + K C
Sbjct  169  PVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKIC  228

Query  260  EGAGVDFKILPTFGEYLAEKPNITQLREVQVEDLLGRPTVDLEIESIRSYLEKKVILVTG  319
            +  GV++  +P + + L+   ++ +L+ V+VEDLLGR  V+L++  I   L +K ILVTG
Sbjct  229  NIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTG  288

Query  320  AGGSIGSEICRQVALFKPSVLVILDAAETPLYEIDYELRKKFSEFNIDIRPVIADVKNLS  379
            AGGSIGSEICRQV+ F P  +++L+ +E ++Y I+ EL K +++  I++ PVIADV+N +
Sbjct  289  AGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGN-RIEFVPVIADVQNKT  347

Query  380  RISAVFEEHRPSVVFHSAAYKHVPMMEINPSEAILNNVMGTKNVADVCRLIGVERFVLIS  439
            RI  V +E +P  V+H+AA KHVP+ME NP EAI NN++GTKNVA+  +   V +FV+IS
Sbjct  348  RILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMIS  407

Query  440  TDKAVNPVNVMGASKRAAEIYLQHISQ-NSRIKFITVRFGNVLGSNGSVIPRFREQIKRG  498
            TDKAVNP NVMGA+KR AE+ +Q +++ NS+  F++VRFGNVLGS GSVIP F++QI  G
Sbjct  408  TDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESG  467

Query  499  GPVTVTHPEVIRYFMTIPEATQLVLQAGSMGEHGEIFLLDMGEPVRILSLAEEMIRLSGY  558
            GPVTVTHPE+ RYFMTIPEA++LVLQAG++++ GE+F+LDMG PV+I+ LA ++IRLSG 
Sbjct  468  GPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGK  527

Query  559  TPYKDINIEFSGLRPGEKLYEELLLNAE  586
                DI IEFSG+RPGEKLYEELL + E
Sbjct  528  KE-EDIGIEFSGIRPGEKLYEELLNKNE  554

250) Msip34_1724 in NC_012969


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  328 bits (1232),  Expect = 4e-91, Method: Compositional matrix adjust.
 Identities = 218/502 (44%), Positives = 366/502 (73%), Gaps = 18/502 (3%)

Query  76   FGLYRGVWRFASLPDLKRILFavataaatvvavIFMTKPHGVIPRSVLI--LDPMLLVLG  133
            F LY+  W +AS+++L  +L AV+++    + ++ +  +++ + R  +I  +  +LL+  
Sbjct  62   FNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLI--  119

Query  134  MGGSRFLYRYWKEHRLYGAFHSQG---QPVLLLGAGTSAINLLKDLTRSQEWRVVGMLDD  190
             GGSR+   +W+  R Y  F  ++   ++ L++GAG ++  L++++ RSQ+ R+  +L  
Sbjct  120  -GGSRL---FWRVYRRY--FIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAV  173

Query  191  DEAMHGRQLLG---VKVLGNIDDIGYFSRRYQVEHVIVAMPSASHQQRRAAVEKANAHAL  247
            D+  + +++     VKV G ++DI  + +++++  +I+A+P+ S+++        N +++
Sbjct  174  DDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGV  233

Query  248  TILTVPSVEDLMNGKVSISQIRRVEVEDLLGREPVQLDTEGMHALLQAQVVMVSGAGGSI  307
             ++ +P++ED+++G + ++++++VEVEDLLGR+PV+LD   +   L  + ++V+GAGGSI
Sbjct  234  ELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSI  293

Query  308  GSELCRQILAFKPAKLICLDISEFALYKLEQEFSAMSNRPADIEYVVGDVKNAERLRHLL  367
            GSE+CRQ+  F P K+I L+ +E ++Y ++QE+S       ++  V++DV+N  R+ +++
Sbjct  294  GSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVM  353

Query  368  QQTKPAVIFHAAAYKHVPMMETGNVSEALHNNVLGTYTLASLAKEAGVAKFVLISTDKAV  427
            ++ KP  ++HAAA KHVP+ME  N  EA++NN+LGT  +A  AKE+ V+KFV+ISTDKAV
Sbjct  354  NEFKPYAVYHAAAHKHVPLMEY-NPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAV  412

Query  428  NPTNVMGASKRLAEMVCQGLQENHG-TRFVIVRFGNVLGSSGSVIPKFREQIAKGGPVTV  486
            NP+NVMGA+KR+AEMV Q+L+E+++ T FV VRFGNVLGS GSVIP F++QI  GGPVTV
Sbjct  413  NPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTV  472

Query  487  THPDITRYFMSIPEATQLVMQAGLMGKGSEIFVLDMGESVKIADLARDMIKLSGLQDDEI  546
            THP++TRYFM+IPEA++LV+QAG +++G+E+FVLDMG +VKI DLA+++I+LSG ++++I
Sbjct  473  THPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDI  532

Query  547  EIVFTGLRPGEKLYEELLADDE  568
             I F+G+RPGEKLYEELL  +E
Sbjct  533  GIEFSGIRPGEKLYEELLNKNE  554

251) MPQ_1724 in NC_014733


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  328 bits (1231),  Expect = 5e-91, Method: Compositional matrix adjust.
 Identities = 218/502 (44%), Positives = 366/502 (73%), Gaps = 18/502 (3%)

Query  76   FGLYRGVWRFASLPDLKRILFavataaatvvavIFMTKPHGVIPRSVLI--LDPMLLVLG  133
            F LY+  W +AS+++L  +L AV+++    + ++ +  +++ + R  +I  +  +LL+  
Sbjct  62   FNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLI--  119

Query  134  MGGSRFLYRYWKEHRLYGAFHSQG---QPVLLLGAGTSAINLLKDLTRSQEWRVVGMLDD  190
             GGSR+   +W+  R Y  F  ++   ++ L++GAG ++  L++++ RSQ+ R+  +L  
Sbjct  120  -GGSRL---FWRVYRRY--FIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAV  173

Query  191  DEAMHGRQLLG---VKVLGNIDDIGYFSRRYQVEHVIVAMPSASHQQRRAAVEKANAHAL  247
            D+  + +++     VKV G ++DI  + +++++  +I+A+P+ S+++        N +++
Sbjct  174  DDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGV  233

Query  248  TILTVPSVEDLMNGKVSISQIRRVEVEDLLGREPVQLDTEGMHALLQAQVVMVSGAGGSI  307
             ++ +P++ED+++G + ++++++VEVEDLLGR+PV+LD   +   L  + ++V+GAGGSI
Sbjct  234  ELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSI  293

Query  308  GSELCRQILAFKPAKLICLDISEFALYKLEQEFSAMSNRPADIEYVVGDVKNAERLRHLL  367
            GSE+CRQ+  F P K+I L+ +E ++Y ++QE+S       ++  V++DV+N  R+ +++
Sbjct  294  GSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVM  353

Query  368  QQTKPAVIFHAAAYKHVPMMETGNVSEALHNNVLGTYTLASLAKEAGVAKFVLISTDKAV  427
            ++ KP  ++HAAA KHVP+ME  N  EA++NN+LGT  +A  AKE+ V+KFV+ISTDKAV
Sbjct  354  NEFKPYAVYHAAAHKHVPLMEY-NPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAV  412

Query  428  NPTNVMGASKRLAEMVCQGLQENHG-TRFVIVRFGNVLGSSGSVIPKFREQIAKGGPVTV  486
            NP+NVMGA+KR+AEMV Q+L+E+++ T FV VRFGNVLGS GSVIP F++QI  GGPVTV
Sbjct  413  NPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTV  472

Query  487  THPDITRYFMSIPEATQLVMQAGLMGKGSEIFVLDMGESVKIADLARDMIKLSGLQDDEI  546
            THP++TRYFM+IPEA++LV+QAG +++G+E+FVLDMG +VKI DLA+++I+LSG ++++I
Sbjct  473  THPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDI  532

Query  547  EIIFTGLRPGEKLYEELLADDE  568
             I F+G+RPGEKLYEELL  +E
Sbjct  533  GIEFSGIRPGEKLYEELLNKNE  554

252) Bcep1808_0820 in NC_009256


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  328 bits (1230),  Expect = 6e-91, Method: Compositional matrix adjust.
 Identities = 220/508 (44%), Positives = 358/508 (71%), Gaps = 8/508 (1%)

Query  62   LFGLYRGLWVFASLPDLVRISKALagggvivmigavmFQPSPIIPRSVLLVSPLMLFLMM  121
            +F LY+  W +AS+++L+ + KA++++ V+ ++   ++ + + + R + +++ +M +L++
Sbjct  61   VFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLR-LYFITWMMHLLLI  119

Query  122  GGARALYRAMKEFYLYGGLVGQGKPVLVIGAGTAGANLARELSRSGEWRLVGLL--DDDK  179
            GG+R + R  + +++  ++  + K+ LV+GAG +G+ L RE+ RS + R+  +L  DDDK
Sbjct  120  GGSRLFWRVYRRYFIDNAV--EKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDK  177

Query  180  TKQGREIYG-YKVLGSLDDVAHWTEALKIEYAIVAIPSASVEVQRRTATLCVRAGLKVMV  238
             KQ   I    KV G ++D+++    ++I   I+AIP+ S         +C   G+ +  
Sbjct  178  NKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFK  237

Query  239  LPSLTALMPGQGFLSQIREIDLEDLLGRDAVTIDTPHVEALLRGRVVMVTGAGGSIGSEL  298
            +P++  +++G+  +++++ +++EDLLGRD+V +D + +   L  + ++VTGAGGSIGSE+
Sbjct  238  MPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEI  297

Query  299  CRQILRFAPAQLVAFDLSEYAMYRLTEELRERFPDQ-PVVPIIGDAKDSLLLDQVMSRHV  357
            CRQ+ +F P +++ ++ +E ++Y + +EL   + ++   VP+I+D ++   + +VM+   
Sbjct  298  CRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFK  357

Query  358  PHIVFHAAAYKHVPLMEEHNAWQALRNNVLGTYRVALAAIRHDVRHFVLISTDKAVNPTN  417
            P  V+HAAA KHVPLME  N+ +A+RNN+LGT  VA +A   +V  FV+ISTDKAVNP+N
Sbjct  358  PYAVYHAAAHKHVPLME-YNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSN  416

Query  418  VMGASKRLAEMACQALQQTTGRTQFETVRFGNVLGSAGSVIPKFQQQIAKGGPVTVTHPE  477
            VMGA+KR+AEM  Q+L++  ++T F +VRFGNVLGS GSVIP F++QI  GGPVTVTHPE
Sbjct  417  VMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPE  476

Query  478  ITRFFMTIPEASQLVLQASSMGHGGEIFILDMGEPVKIVDLACGLIRLYGFSEDQIQIEF  537
            +TR+FMTIPEAS+LVLQA+++++GGE+F+LDMG PVKIVDLA  LIRL G  E++I IEF
Sbjct  477  MTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEF  536

Query  538  TGLRPGEKLYEELLADDEATTRTPHPKL  565
            +G+RPGEKLYEELL  +E   +    K+
Sbjct  537  SGIRPGEKLYEELLNKNEIHPQQVYEKI  564

253) AXYL_06301 in NC_014640


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  328 bits (1229),  Expect = 7e-91, Method: Compositional matrix adjust.
 Identities = 238/496 (48%), Positives = 354/496 (72%), Gaps = 8/496 (1%)

Query  63   GLYRGMWIFASLPDLKRVLNVVLASTVALLLFAFLNRGQPALPRSIlvlyplllllvMGG  122
             LY+  W +AS+++L  VL+ V +S V  LL+  L  +++++ R +  +  ++ LL++GG
Sbjct  63   NLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLR-LYFITWMMHLLLIGG  121

Query  123  GRAAWRMWKEHRLYRAGFGKgtpvvvvgagtagaMLVRELGRSSDWHVVAL--VDDDPAK  180
            +R  WR+ +  R +        + +VVGAG +G++L+RE+ RS D ++ ++  VDDD  K
Sbjct  122  SRLFWRVYR--RYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNK  179

Query  181  RGLEISG-CRVAGGTNRLPEILNDYGAKHVILAIPSAKGTAIRHVSDIVTRAGASLFTVP  239
            + + I+   +V G  + +PE+++ +  K +I+AIP+     + +++ I    G  LF +P
Sbjct  180  QKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMP  239

Query  240  GLSELMSGRVAINMMRPVKIEDLLGRESVHIDNVNIHEMIAGKQILVTGAGGSIGSELCR  299
             + +++SG + +N ++ V +EDLLGR++V++D   I   ++ K ILVTGAGGSIGSE+CR
Sbjct  240  NIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICR  299

Query  300  QLARFAPAAIILYEVSEFALYTIEQWFTDN-QPSVRVIPLAGDVKDATRVDEVFARYKPD  358
            Q+++F P  IIL   +E ++Y+I+Q ++      +  +P+ +DV++ TR+ EV   +KP 
Sbjct  300  QVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPY  359

Query  359  IVFHAAAYKHVPLMEIDNAWQAVRNNVLGTLNVAQCAERYQAQRFVLISTDKAVNPTNVM  418
             V+HAAA KHVPLME  N+ +A+RNN+LGT NVA+ A   +  +FV+ISTDKAVNP+NVM
Sbjct  360  AVYHAAAHKHVPLMEY-NPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVM  418

Query  419  GATKRMAEMVCEVLHGRNGKTRFQIVRFGNVLGSTGSVIPRFQSQISRGGPVSVTHPEIT  478
            GATKR+AEMV + L+  N+KT F  VRFGNVLGS GSVIP F++QI  GGPV+VTHPE+T
Sbjct  419  GATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMT  478

Query  479  RYFMSIPEAARLVLQAAAMGNGGEIFVLDMGEPVKIADLARNMIRLSGFTEEEIHIEFTG  538
            RYFM+IPEA+RLVLQA+A+++GGE+FVLDMG PVKI DLA+N+IRLSG  EE+I IEF+G
Sbjct  479  RYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSG  538

Query  539  LRPGEKLYEELLADCE  554
            +RPGEKLYEELL   E
Sbjct  539  IRPGEKLYEELLNKNE  554

254) H04402_03186 in NC_017299


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  327 bits (1227),  Expect = 1e-90, Method: Compositional matrix adjust.
 Identities = 244/539 (46%), Positives = 374/539 (70%), Gaps = 20/539 (3%)

Query  66   YSSIWKYASVEELMsiiysvsisnfifiiysyfinyKVLESNYYRFPFTVHIIFWILSIV  125
            Y   W YASV ELMS++ +V+ S  + ++   ++     ES + R+ F      W++ ++
Sbjct  65   YHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLIS---ESPFLRLYFIT----WMMHLL  117

Query  126  SLGGTRFIYRVIEDKECNKNKCNCDSKEKKlliigagdaaaliiKEIKRNKELNYNIIGL  185
             +GG+R++ RV       +   +     K  L++GAG++++++I+E+ R++++  + +  
Sbjct  118  LIGGSRLFWRV-----YRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLA  172

Query  186  IDDDIEKLGKRI-NSIPVLGGREGIIKISKNKKIDEIILAIPSASSSTKSEIVSICKETN  244
            +DDD +K    I + + V G  E+I  + K+ +I  II+AIP+ S    +EI  IC+   
Sbjct  173  VDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEG  232

Query  245  CKLKTLPSMDKIIQGKFNMSKLRDVSIEDLLGREEVKLDDSGINKYIKDKVVLVTGGGGS  304
              L  +P+++ ++ G +++++L+ V +EDLLGR+ V LD + I++ + +K +LVTG+GGS
Sbjct  233  VELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGS  292

Query  305  IGSELCRQIVKFSPKKLLILDIYENNAYDVQMELNYKYPE-LDKAVIIASIRDEKRLKDI  363
            IGSE+CRQ+ KF P+K+++L+  EN+ Y ++ EL+  Y + ++   +IA +++  R+ ++
Sbjct  293  IGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEV  352

Query  364  FSLYKPDVVFHAAAHKHVPLMEENPAESIKNNVIGTYNLIKCAHEFGIERFVQISTDKAV  423
             + +KP  V+HAAAHKHVPLME NP E+I+NN++GT N+   A E  + +FV ISTDKAV
Sbjct  353  MNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAV  412

Query  424  NPTNIMGATKRFCEIMIQAF-DKISKTEFVAVRFGNVLGSNGSVIPLFKKQISHGGPVTV  482
            NP+N+MGATKR+ E++IQ++ +  SKT FVAVRFGNVLGS GSVIPLFK+QI  GGPVTV
Sbjct  413  NPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTV  472

Query  483  THPEINRYFMTIPEAAQLVIQAGAMAKGGEIFVLDMGKPVKIVDLAKDLITLSGYKPGED  542
            THPE+ RYFMTIPEA++LV+QAGA+A+GGE+FVLDMGKPVKIVDLAK+LI LSG K  ED
Sbjct  473  THPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEED  531

Query  543  IKIEYTGLRPGEKLYEELLMDEIALTSTGHNKIF---VEKPMENNTDF-VEKSIEEFKK  597
            I IE++G+RPGEKLYEELL  +        +KI+   V+  +  + D+ VE  I++F K
Sbjct  532  IGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSK  590

255) Bmul_2504 in NC_010084


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  327 bits (1226),  Expect = 1e-90, Method: Compositional matrix adjust.
 Identities = 225/539 (42%), Positives = 373/539 (70%), Gaps = 12/539 (2%)

Query  62   IFGLYRGLWVFASLPDLMRISKavgggavivmigavmFQPMPIIPRSVLLVSPLMLFLAM  121
            +F LY+  W +AS+++LM + KAV ++ V+ ++   ++ + + + R + +++ +M +L +
Sbjct  61   VFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLR-LYFITWMMHLLLI  119

Query  122  GGARALYRATKEFYLYGGLVGQGKPVLVLGAGTAGANLARELSRSGEWRLVGLL--DDDV  179
            GG+R + R  + +++  ++  + K+ LV+GAG +G+ L RE+ RS + R+  +L  DDD 
Sbjct  120  GGSRLFWRVYRRYFIDNAV--EKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDK  177

Query  180  TKQGREIYG-YKVLGSFNDLKLWTDATKVEYAIIAIPSASVETQRRVATLCVRAGVKAMV  238
             KQ   I    KV G  +D+       ++   IIAIP+ S      +  +C   GV    
Sbjct  178  NKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFK  237

Query  239  LPSLTALMPGQGFLSQVRNIDLEDLLGREAVTIDTPHVEALLRGRVVMVTGAGGSIGSEL  298
            +P++  +++G+  +++++++++EDLLGR++V +D + +   L  + ++VTGAGGSIGSE+
Sbjct  238  MPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEI  297

Query  299  CRQILRFAPAQLVAFDLSEYAMYRLVEELRERFPDQ-PVVPIIGDAKDSLLLDQVMSRYA  357
            CRQ+ +F P +++ ++ +E ++Y + +EL   + ++   VP+I+D ++   + +VM+ + 
Sbjct  298  CRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFK  357

Query  358  PHIVFHAAAYKHVPLMEEHNAWQALRNNVLGTYRVARAAIRHDVRHFVLISTDKAVNPTN  417
            P  V+HAAA KHVPLME  N+ +A+RNN+LGT  VA +A   +V  FV+ISTDKAVNP+N
Sbjct  358  PYAVYHAAAHKHVPLME-YNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSN  416

Query  418  VMGASKRLAEMACQALQQTSDRTQFETVRFGNVLGSAGSVIPKFQQQIAKGGPVTVTHPE  477
            VMGA+KR+AEM  Q+L++ + +T F +VRFGNVLGS GSVIP F++QI  GGPVTVTHPE
Sbjct  417  VMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPE  476

Query  478  ITRFFMTIPEASQLVLQASSMGRGGEIFILDMGQPVKIVDLARDLIRLYGFSEEQIRIEF  537
            +TR+FMTIPEAS+LVLQA+++++GGE+F+LDMG+PVKIVDLA++LIRL G  EE+I IEF
Sbjct  477  MTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEF  536

Query  538  TGLRPGEKLYEELLADDETTTRTPHPKL---RIAR-AREVPDHLLDELLPWLMQHRVLT  592
            +G+RPGEKLYEELL  +E   +    K+   ++ +  +   D ++++L+  + ++++L 
Sbjct  537  SGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLK  595

256) BMULJ_00732 in NC_010804


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  327 bits (1226),  Expect = 1e-90, Method: Compositional matrix adjust.
 Identities = 225/539 (42%), Positives = 373/539 (70%), Gaps = 12/539 (2%)

Query  62   IFGLYRGLWVFASLPDLMRISKavgggavivmigavmFQPMPIIPRSVLLVSPLMLFLAM  121
            +F LY+  W +AS+++LM + KAV ++ V+ ++   ++ + + + R + +++ +M +L +
Sbjct  61   VFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLR-LYFITWMMHLLLI  119

Query  122  GGARALYRATKEFYLYGGLVGQGKPVLVLGAGTAGANLARELSRSGEWRLVGLL--DDDV  179
            GG+R + R  + +++  ++  + K+ LV+GAG +G+ L RE+ RS + R+  +L  DDD 
Sbjct  120  GGSRLFWRVYRRYFIDNAV--EKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDK  177

Query  180  TKQGREIYG-YKVLGSFNDLKLWTDATKVEYAIIAIPSASVETQRRVATLCVRAGVKAMV  238
             KQ   I    KV G  +D+       ++   IIAIP+ S      +  +C   GV    
Sbjct  178  NKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFK  237

Query  239  LPSLTALMPGQGFLSQVRNIDLEDLLGREAVTIDTPHVEALLRGRVVMVTGAGGSIGSEL  298
            +P++  +++G+  +++++++++EDLLGR++V +D + +   L  + ++VTGAGGSIGSE+
Sbjct  238  MPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEI  297

Query  299  CRQILRFAPAQLVAFDLSEYAMYRLVEELRERFPDQ-PVVPIIGDAKDSLLLDQVMSRYA  357
            CRQ+ +F P +++ ++ +E ++Y + +EL   + ++   VP+I+D ++   + +VM+ + 
Sbjct  298  CRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFK  357

Query  358  PHIVFHAAAYKHVPLMEEHNAWQALRNNVLGTYRVARAAIRHDVRHFVLISTDKAVNPTN  417
            P  V+HAAA KHVPLME  N+ +A+RNN+LGT  VA +A   +V  FV+ISTDKAVNP+N
Sbjct  358  PYAVYHAAAHKHVPLME-YNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSN  416

Query  418  VMGASKRLAEMACQALQQTSDRTQFETVRFGNVLGSAGSVIPKFQQQIAKGGPVTVTHPE  477
            VMGA+KR+AEM  Q+L++ + +T F +VRFGNVLGS GSVIP F++QI  GGPVTVTHPE
Sbjct  417  VMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPE  476

Query  478  ITRFFMTIPEASQLVLQASSMGRGGEIFILDMGQPVKIVDLARDLIRLYGFSEEQIRIEF  537
            +TR+FMTIPEAS+LVLQA+++++GGE+F+LDMG+PVKIVDLA++LIRL G  EE+I IEF
Sbjct  477  MTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEF  536

Query  538  TGLRPGEKLYEELLADDETTTRTPHPKL---RIAR-AREVPDHLLDELLPWLMQHRVLT  592
            +G+RPGEKLYEELL  +E   +    K+   ++ +  +   D ++++L+  + ++++L 
Sbjct  537  SGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLK  595

257) CLK_2503 in NC_010520


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  327 bits (1225),  Expect = 2e-90, Method: Compositional matrix adjust.
 Identities = 248/540 (46%), Positives = 376/540 (70%), Gaps = 20/540 (3%)

Query  65   LYSSIWKYASVEELMsiiysvsisniifiiysyfinyKILESNYYRFPFTVHIIFWILSI  124
            LY   W YASV ELMS++ +V+ S ++ ++   ++     ES + R+ F      W++ +
Sbjct  64   LYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLIS---ESPFLRLYFIT----WMMHL  116

Query  125  VSLGGTRFIYRVIEDKECNKNKCNCDSKEKKlliigagdaaaliiKEIKRNKELNYSIIG  184
            + +GG+R++ RV       +   +     K  L++GAG++++++I+E+ R++++    + 
Sbjct  117  LLIGGSRLFWRV-----YRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVL  171

Query  185  LVDDDIEKLGKRING-IPVLGGResiikisknkkideiiLAIPSAPSSTKSEIVSICKET  243
             VDDD +K    I   + V G  E I  + K+ +I  II+AIP+ +    +EI  IC+  
Sbjct  172  AVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIE  231

Query  244  SCKLKTLPSMDKVIQGKFNMSKLRDVSIEDLLGREEVKLDDSGINRYIKDKVVLVTGGGG  303
            +  L  +P+++ V+ G +++++L+ V +EDLLGR+ V LD + I+R + +K +LVTG+GG
Sbjct  232  GVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGG  291

Query  304  SIGSELCRQIVKFSPKKLLILDIYENNAYDVQMELNYKYPD-LDKAVIIASIRDEKRLKD  362
            SIGSE+CRQ+ KF P+K+++L+  EN+ Y ++ EL+  Y + ++   +IA +++  R+ +
Sbjct  292  SIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILE  351

Query  363  IFSLYKPDVVFHAAAHKHVPLMEENPAESIKNNVIGTYNLIKCAHEFGIERFVQISTDKA  422
            + + +KP  V+HAAAHKHVPLME NP E+I+NN++GT N+   A E  + +FV ISTDKA
Sbjct  352  VMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKA  411

Query  423  VNPTNIMGATKRFCEIMIQAF-DKISKTEFVAVRFGNVLGSNGSVIPLFKKQISHGGPVT  481
            VNP+N+MGATKR+ E++IQ++ +  SKT FVAVRFGNVLGS GSVIPLFK+QI  GGPVT
Sbjct  412  VNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVT  471

Query  482  VTHPEINRYFMTIPEAAQLVIQAGAMAKGGEIFVLDMGKPVKIVDLAKDLITLSGYKPEE  541
            VTHPE+ RYFMTIPEA++LV+QAGA+A+GGE+FVLDMGKPVKIVDLAK+LI LSG K EE
Sbjct  472  VTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEE  530

Query  542  DIKIEYTGLRPGEKLYEELLMDEIALTSTGHNKIF---VEKPMENNIDF-VEKSIEEFKK  597
            DI IE++G+RPGEKLYEELL  +        +KI+   V+  +  ++D+ VE  I++F K
Sbjct  531  DIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSK  590

258) Bcep18194_A3984 in NC_007510


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  327 bits (1228),  Expect = 9e-91, Method: Compositional matrix adjust.
 Identities = 218/508 (43%), Positives = 360/508 (71%), Gaps = 8/508 (1%)

Query  62   LFGLYRGLWVFASLPDLVRISKALagggvivmigavmFQPSPIIPRSVLLVSPLMLFLMM  121
            +F LY+  W +AS+++L+ + KA++++ V+ ++   ++ + + + R + +++ +M +L++
Sbjct  61   VFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLR-LYFITWMMHLLLI  119

Query  122  GGARALYRAMKEFYLYGGLVGQGKPVLVIGAGTAGANLARELSRSGEWRLVGLL--DDDQ  179
            GG+R + R  + +++  ++  + K+ LV+GAG +G+ L RE+ RS + R+  +L  DDD+
Sbjct  120  GGSRLFWRVYRRYFIDNAV--EKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDK  177

Query  180  TKQGREIYG-YKVLGSLDDVAHWTEALKIEYAIVAIPSASVEVQRRTATLCVRAGLKVMV  238
             KQ   I    KV G ++D+++    ++I   I+AIP+ S         +C   G+ +  
Sbjct  178  NKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFK  237

Query  239  LPSLTALMPGQGFLSQIREIDLEDLLGRDAVTIDTPHVEALLRGRVVMVTGAGGSIGSEL  298
            +P++  +++G+  +++++ +++EDLLGRD+V +D + +   L  + ++VTGAGGSIGSE+
Sbjct  238  MPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEI  297

Query  299  CRQILRFAPAQLVAFDLSEYAMYRLTEELRERFPDQ-PVVPIIGDAKDSLLLDQVMSRHV  357
            CRQ+ +F P +++ ++ +E ++Y + +EL   + ++   VP+I+D ++   + +VM+   
Sbjct  298  CRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFK  357

Query  358  PHIVFHAAAYKHVPLMEEHNAWQALRNNVLGTYRVARAAIRHDVRHFVLISTDKAVNPTN  417
            P  V+HAAA KHVPLME  N+ +A+RNN+LGT  VA +A   +V  FV+ISTDKAVNP+N
Sbjct  358  PYAVYHAAAHKHVPLME-YNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSN  416

Query  418  VMGASKRLAEMACQALQQTSGRTQFETVRFGNVLGSAGSVIPKFQQQIAKGGPVTVTHPQ  477
            VMGA+KR+AEM  Q+L++ +++T F +VRFGNVLGS GSVIP F++QI  GGPVTVTHP+
Sbjct  417  VMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPE  476

Query  478  ITRFFMTIPEASQLVLQASSMGHGGEIFILDMGEPVKIVDLACDLIRLYGFSEDQIQIEF  537
            +TR+FMTIPEAS+LVLQA+++++GGE+F+LDMG PVKIVDLA +LIRL G  E++I IEF
Sbjct  477  MTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEF  536

Query  538  TGLRPGEKLYEELLADDETTTRTPHPKL  565
            +G+RPGEKLYEELL  +E   +    K+
Sbjct  537  SGIRPGEKLYEELLNKNEIHPQQVYEKI  564

259) TASI_0395 in NC_016043


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  326 bits (1223),  Expect = 2e-90, Method: Compositional matrix adjust.
 Identities = 221/473 (47%), Positives = 348/473 (74%), Gaps = 14/473 (2%)

Query  52   LLLVIIMGGARFAWRAINDRRKHTVHSKA--KPVIIVGAGEAGIMLMRELDRSSVWR---  106
            ++ ++++GG+R+ WR     R+  +++    K+ ++VGAG++G +L+RE+ RS   R   
Sbjct  113  MMHLLLIGGSRLFWRVY---RRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQP  169

Query  107  VVAllddderklglellgrrvvgSTKDLAQSLKEYGAKHVIIAIPSAAHEVMQNVTNIAL  166
            V+A+ DD +++        +V G   D+++ +K +  K +IIAIP+ ++  ++++ +I  
Sbjct  170  VLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICN  229

Query  167  NAGAAVFTVPNLEDLMSGRVAINAMRPVNIEDLLGRDAVELDTANISELISNKCVLVSGA  226
              G  +F +PN+ED++SG + +N ++ V++EDLLGRD+VELD A IS  ++NK +LV+GA
Sbjct  230  IEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGA  289

Query  227  GGSIGSELCRQIAKYKPQKLVLVELSEFALYTIEQWFSDNCCE-TQIIPLTADVKNYARM  285
            GGSIGSE+CRQ++K+ PQK++L+  +E ++Y+I+Q +S    +  +++P+ ADV+N +R+
Sbjct  290  GGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRI  349

Query  286  KAIFEQHRPSLVFHAAAYKHVPLMEVSNAFEAIRNNSFGTYNLAKVSVETGVRRFVLIST  345
              + ++ +P  V+HAAA KHVPLME  N+ EAIRNN +GT N+A  + E  V +FV+IST
Sbjct  350  LEVMNEFKPYAVYHAAAHKHVPLME-YNPHEAIRNNILGTKNVAESAKEGEVSKFVMIST  408

Query  346  DKAVNPTNVMGATKRLAEKLLERMQTFHGQTTTFNMVRFGNVLGSTGSVIPKFQKQIQKG  405
            DKAVNP+NVMGATKR+AE +++ ++  +   T+F  VRFGNVLGS GSVIP F++QI+ G
Sbjct  409  DKAVNPSNVMGATKRIAEMVIQSLNE-DNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESG  467

Query  406  GPITVTHPDINRYFMSIPEAAQLVIQAATMGQGGEVFVLDMGKPVRIVDLAKNMIRLSGF  465
            GP+TVTHP++ RYFM+IPEA++LV+QA++++QGGEVFVLDMGKPV+IVDLAKN+IRLSG 
Sbjct  468  GPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGK  527

Query  466  TEDQIAIEYTGLRPGEKLYEELMADEETTSATSHGKL---RIAKTVPTAEGLI  515
             E++I+IE++G+RPGEKLYEEL+  +E  +     K+   ++   + T  +LI
Sbjct  528  KEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLI  580

260) CLB_3138 in NC_009697


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  326 bits (1222),  Expect = 2e-90, Method: Compositional matrix adjust.
 Identities = 248/540 (46%), Positives = 376/540 (70%), Gaps = 20/540 (3%)

Query  65   LYSSIWKYASVEELMsiiysvsisniifiiysyfinyKVLESNYYRFPFTVHIIFWILSI  124
            LY   W YASV ELMS++ +V+ S ++ ++   ++     ES + R+ F      W++ +
Sbjct  64   LYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLIS---ESPFLRLYFIT----WMMHL  116

Query  125  VSLGGTRFIYRVIEDKECNKNKCNCDSKEKKlliigagdaaaliiKEIKRNKELNYSIIG  184
            + +GG+R++ RV       +   +     K  L++GAG++++++I+E+ R++++    + 
Sbjct  117  LLIGGSRLFWRV-----YRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVL  171

Query  185  LVDDDIEKLGKRING-IPVLGGResiikisknkkideiiLAIPSAASSTKSEIVSICKET  243
             VDDD +K    I   + V G  E I  + K+ +I  II+AIP+ +    +EI  IC+  
Sbjct  172  AVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIE  231

Query  244  SCKLKTLPSMDKVIQGKFNMSKLRDVSIEDLLGREEVKLDDSGINRYIKDKVVLVTGGGG  303
            +  L  +P+++ V+ G +++++L+ V +EDLLGR+ V LD + I+R + +K +LVTG+GG
Sbjct  232  GVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGG  291

Query  304  SIGSELCRQIVKFSPKKLLILDIYENNAYDVQMELNYKYPE-LDKAVIIASIRDEKRLRN  362
            SIGSE+CRQ+ KF P+K+++L+  EN+ Y ++ EL+  Y + ++   +IA +++  R+ +
Sbjct  292  SIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILE  351

Query  363  IFSLYKPDVVFHAAAHKHVPLMEENPAESIKNNVIGTYNLIKCAHEFGIERFVQISTDKA  422
            + + +KP  V+HAAAHKHVPLME NP E+I+NN++GT N+   A E  + +FV ISTDKA
Sbjct  352  VMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKA  411

Query  423  VNPTNIMGATKRFCEIMIQAF-DKISKTEFVAVRFGNVLGSNGSVIPLFKKQISHGGPVT  481
            VNP+N+MGATKR+ E++IQ++ +  SKT FVAVRFGNVLGS GSVIPLFK+QI  GGPVT
Sbjct  412  VNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVT  471

Query  482  VTHPEINRYFMTIPEAAQLVIQAGAMAKGGEIFVLDMGKPVKIVDLAKDLITLSGYKPEE  541
            VTHPE+ RYFMTIPEA++LV+QAGA+A+GGE+FVLDMGKPVKIVDLAK+LI LSG K EE
Sbjct  472  VTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEE  530

Query  542  DIKIEYTGLRPGEKLYEELLMDEIALTSTGHNKIF---VEKPMENNIDF-VEKSIEEFKK  597
            DI IE++G+RPGEKLYEELL  +        +KI+   V+  +  ++D+ VE  I++F K
Sbjct  531  DIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSK  590

261) CBO3109 in NC_009495


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  326 bits (1222),  Expect = 2e-90, Method: Compositional matrix adjust.
 Identities = 248/540 (46%), Positives = 376/540 (70%), Gaps = 20/540 (3%)

Query  65   LYSSIWKYASVEELMsiiysvsisniifiiysyfinyKVLESNYYRFPFTVHIIFWILSI  124
            LY   W YASV ELMS++ +V+ S ++ ++   ++     ES + R+ F      W++ +
Sbjct  64   LYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLIS---ESPFLRLYFIT----WMMHL  116

Query  125  VSLGGTRFIYRVIEDKECNKNKCNCDSKEKKlliigagdaaaliiKEIKRNKELNYSIIG  184
            + +GG+R++ RV       +   +     K  L++GAG++++++I+E+ R++++    + 
Sbjct  117  LLIGGSRLFWRV-----YRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVL  171

Query  185  LVDDDIEKLGKRING-IPVLGGResiikisknkkideiiLAIPSAASSTKSEIVSICKET  243
             VDDD +K    I   + V G  E I  + K+ +I  II+AIP+ +    +EI  IC+  
Sbjct  172  AVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIE  231

Query  244  SCKLKTLPSMDKVIQGKFNMSKLRDVSIEDLLGREEVKLDDSGINRYIKDKVVLVTGGGG  303
            +  L  +P+++ V+ G +++++L+ V +EDLLGR+ V LD + I+R + +K +LVTG+GG
Sbjct  232  GVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGG  291

Query  304  SIGSELCRQIVKFSPKKLLILDIYENNAYDVQMELNYKYPE-LDKAVIIASIRDEKRLRN  362
            SIGSE+CRQ+ KF P+K+++L+  EN+ Y ++ EL+  Y + ++   +IA +++  R+ +
Sbjct  292  SIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILE  351

Query  363  IFSLYKPDVVFHAAAHKHVPLMEENPAESIKNNVIGTYNLIKCAHEFGIERFVQISTDKA  422
            + + +KP  V+HAAAHKHVPLME NP E+I+NN++GT N+   A E  + +FV ISTDKA
Sbjct  352  VMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKA  411

Query  423  VNPTNIMGATKRFCEIMIQAF-DKISKTEFVAVRFGNVLGSNGSVIPLFKKQISHGGPVT  481
            VNP+N+MGATKR+ E++IQ++ +  SKT FVAVRFGNVLGS GSVIPLFK+QI  GGPVT
Sbjct  412  VNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVT  471

Query  482  VTHPEINRYFMTIPEAAQLVIQAGAMAKGGEIFVLDMGKPVKIVDLAKDLITLSGYKPEE  541
            VTHPE+ RYFMTIPEA++LV+QAGA+A+GGE+FVLDMGKPVKIVDLAK+LI LSG K EE
Sbjct  472  VTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEE  530

Query  542  DIKIEYTGLRPGEKLYEELLMDEIALTSTGHNKIF---VEKPMENNIDF-VEKSIEEFKK  597
            DI IE++G+RPGEKLYEELL  +        +KI+   V+  +  ++D+ VE  I++F K
Sbjct  531  DIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSK  590

262) CLC_3011 in NC_009698


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  326 bits (1222),  Expect = 2e-90, Method: Compositional matrix adjust.
 Identities = 248/540 (46%), Positives = 376/540 (70%), Gaps = 20/540 (3%)

Query  65   LYSSIWKYASVEELMsiiysvsisniifiiysyfinyKVLESNYYRFPFTVHIIFWILSI  124
            LY   W YASV ELMS++ +V+ S ++ ++   ++     ES + R+ F      W++ +
Sbjct  64   LYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLIS---ESPFLRLYFIT----WMMHL  116

Query  125  VSLGGTRFIYRVIEDKECNKNKCNCDSKEKKlliigagdaaaliiKEIKRNKELNYSIIG  184
            + +GG+R++ RV       +   +     K  L++GAG++++++I+E+ R++++    + 
Sbjct  117  LLIGGSRLFWRV-----YRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVL  171

Query  185  LVDDDIEKLGKRING-IPVLGGResiikisknkkideiiLAIPSAASSTKSEIVSICKET  243
             VDDD +K    I   + V G  E I  + K+ +I  II+AIP+ +    +EI  IC+  
Sbjct  172  AVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIE  231

Query  244  SCKLKTLPSMDKVIQGKFNMSKLRDVSIEDLLGREEVKLDDSGINRYIKDKVVLVTGGGG  303
            +  L  +P+++ V+ G +++++L+ V +EDLLGR+ V LD + I+R + +K +LVTG+GG
Sbjct  232  GVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGG  291

Query  304  SIGSELCRQIVKFSPKKLLILDIYENNAYDVQMELNYKYPE-LDKAVIIASIRDEKRLRN  362
            SIGSE+CRQ+ KF P+K+++L+  EN+ Y ++ EL+  Y + ++   +IA +++  R+ +
Sbjct  292  SIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILE  351

Query  363  IFSLYKPDVVFHAAAHKHVPLMEENPAESIKNNVIGTYNLIKCAHEFGIERFVQISTDKA  422
            + + +KP  V+HAAAHKHVPLME NP E+I+NN++GT N+   A E  + +FV ISTDKA
Sbjct  352  VMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKA  411

Query  423  VNPTNIMGATKRFCEIMIQAF-DKISKTEFVAVRFGNVLGSNGSVIPLFKKQISHGGPVT  481
            VNP+N+MGATKR+ E++IQ++ +  SKT FVAVRFGNVLGS GSVIPLFK+QI  GGPVT
Sbjct  412  VNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVT  471

Query  482  VTHPEINRYFMTIPEAAQLVIQAGAMAKGGEIFVLDMGKPVKIVDLAKDLITLSGYKPEE  541
            VTHPE+ RYFMTIPEA++LV+QAGA+A+GGE+FVLDMGKPVKIVDLAK+LI LSG K EE
Sbjct  472  VTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEE  530

Query  542  DIKIEYTGLRPGEKLYEELLMDEIALTSTGHNKIF---VEKPMENNIDF-VEKSIEEFKK  597
            DI IE++G+RPGEKLYEELL  +        +KI+   V+  +  ++D+ VE  I++F K
Sbjct  531  DIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSK  590

263) capD in NC_014323


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  326 bits (1224),  Expect = 2e-90, Method: Compositional matrix adjust.
 Identities = 209/457 (46%), Positives = 326/457 (72%), Gaps = 17/457 (3%)

Query  123  ILLLLFVGASRALARVWLGDQYLSILKQASRPKVLIYGAGSTGRQLVAAMASSHEMQVVG  182
            ++ LL++G+SR + RV    +Y+ I +   +   L+ GAG  G  L+  M  S++M++  
Sbjct  113  MMHLLLIGGSRLFWRVY--RRYF-IDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQP  169

Query  183  FLD-DDDRLHGHVLNGQPI----YNPADLSSLASTLSISNVLLAMPSLSRKRRNEILAQI  237
             L  DDD+    +   + +    Y   D++ L   + I ++++A+P+LS+KR NEI    
Sbjct  170  VLAVDDDKNKQKMTITERVKVQGY-VEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKIC  228

Query  238  RTARVAVRTLPSVTDLAQGRVNVSDLRELDIDDLLGREPVMPNHILLAMNVRSKVVMVTG  297
                V +  +P++ D+  G ++V++L+ ++++DLLGR+PV  +  L++ ++ +K ++VTG
Sbjct  229  NIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTG  288

Query  298  AGGSIGSELCRQILAVGPSKLLLIEQSEFALYAIHQQLEEKLADRDIVLVPLLASVQDSE  357
            AGGSIGSE+CRQ+   +P K++L+ ++E ++Y+IHQ+L    ++R I +VP++A VQ+  
Sbjct  289  AGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNR-IEFVPVIADVQNKT  347

Query  358  RIREIMSTWHPDTVYHAAAYKHVPLVEHNPAEGIKNNVLGTLRTAQAATENGVADFVLIS  417
            RI E+M+   P +VYHAAA KHVPL+E NP E+I+NN+LGT   A++A E  V+ FV+IS
Sbjct  348  RILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMIS  407

Query  418  TDKAVRPTNIMGASKRLAEMVLQAIAATSPGTKFSMVRFGNVLGSSGSVVPKFRQQIRDG  477
            TDKAV P+N+MGA+KR+AEMV+Q++   ++ T F  VRFGNVLGS GSV+P F++QI  G
Sbjct  408  TDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESG  467

Query  478  GPITLTHADITRYFMTIPEASQLVIQAGAMAKGGDVFVLDMGQAVRIMDLARRMIELSGL  537
            GP+T+TH+++TRYFMTIPEAS+LV+QAGA+A+GG+VFVLDMG++V+I+DLA+ +I LSG 
Sbjct  468  GPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-  526

Query  538  TVKDELNPEGDIAIEITGLRPGEKLYEELLIGDNPKP  574
                  + E DI+IE++G+RPGEKLYEELL  ++  P
Sbjct  527  ------KKEEDIGIEFSGIRPGEKLYEELLNKNEIHP  557

264) FMG_1137 in NC_010376


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  326 bits (1224),  Expect = 2e-90, Method: Compositional matrix adjust.
 Identities = 228/529 (44%), Positives = 363/529 (69%), Gaps = 13/529 (2%)

Query  60   KMYKVMWRYATFEDYLKA--GVYTAIASVGSSMFLIVVKSTLPRSSFLIALVFEVILIFV  117
            ++Y   W YA+  + +    +V ++I      + L++  S + R  ++I+ + +++LI  
Sbjct  63   NLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRL-YFITWMMHLLLIGG  121

Query  118  VRMFARTQTDKKSTVETKIEGQVNSMVIgagaagvlvvREMLKHPEMKSKPVCIIDDDNT  177
             R+F R    ++  ++  +E +  ++V+GAG +G +++REML+  +M+ +PV  +DDD+ 
Sbjct  122  SRLFWRVY--RRYFIDNAVEKK-ATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKN  178

Query  178  KINKSISS-VPVVGNTSDIVKKAHEYNVEEIILAIPTIDSDRKKQILNECEKLNAKVKIM  236
            K + +I+  V V G   DI      + +  II+AIPT+   R ++I + C+     +  M
Sbjct  179  KQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKM  238

Query  237  PGYYEFIDSKVDLKDLRDVQIEDLLGRDQVVLDKEILNEFLNNKVVMVTGAGGSIGSELC  296
            P   + + + +++++L+ V++EDLLGRD V LD  +++  L NK ++VTGAGGSIGSE+C
Sbjct  239  PNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEIC  298

Query  297  RQILKYKPKKLVMLDIYENTTYDIQNEILRN-DPNAPIDVIIESIRNFDRMNALFGIHKP  355
            RQ+ K+ P+K+++L+  EN+ Y I++E+ +  +    +  +I  ++N  R+  +    KP
Sbjct  299  RQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKP  358

Query  356  DVVFHAAAHKHVPLMEHSPQAAVLNNVFGTKNIIDCCDIHNVKKFVLISTDKAVNPTSVM  415
              V+HAAAHKHVPLME +P+ A+ NN++GTKN+ +     +V KFV+ISTDKAVNP++VM
Sbjct  359  YAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVM  418

Query  416  GCTKRICELLVQS-KNQVSKTEYVAVRFGNVLGSNGSVIPLFKKQIQEGGPVTVTHKDII  474
            G TKRI E+++QS +++ SKT +VAVRFGNVLGS GSVIPLFK+QI+ GGPVTVTH ++ 
Sbjct  419  GATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMT  478

Query  475  RYFMTIPEACQLVMQAGAMAEGGEIFVLDMGDPVKIVDLAKKLIKLSGLELDKDIKIEFT  534
            RYFMTIPEA +LV+QAGA+A+GGE+FVLDMG PVKIVDLAK+LI+LSG   + DI IEF+
Sbjct  479  RYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIGIEFS  537

Query  535  GLRPGEKLYEETLIEANNISKTKYDMIF---VEEPVVHDIEKLSNDLVD  580
            G+RPGEKLYEE L   +  ++  Y+ I+   V++ +  +++ + +DL++
Sbjct  538  GIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLIN  586

265) capD2 in NC_012108


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  326 bits (1223),  Expect = 2e-90, Method: Compositional matrix adjust.
 Identities = 218/528 (42%), Positives = 363/528 (69%), Gaps = 27/528 (5%)

Query  64   YAFNMYRGMWRYTSGSDVVNVIKAsilsslliMALVLFVKNFGGFSRSVFAIDLCLTIFL  123
            Y FN+Y+  W Y+S S++++V+KA   S ++ + LV ++ + + F R ++ I   + ++L
Sbjct  60   YVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLR-LYFITWMMHLLL  118

Query  124  LSGFRLCVKKYFEISAGNRFSMLTTIGTIIKDIFFRENGATK--LLIIGAGSCGERIVRE  181
            ++G RL  + Y       R+              F +N+  K   L++GAG  G  ++RE
Sbjct  119  IGGSRLFWRVY------RRY--------------FIDNAVEKKATLVVGAGQGGSVLIRE  158

Query  182  IIKNSMLKYKVVGFLDDNPKKIGKTIHG-ITVLNVIDSLEKVAKKVEATEVLIAIPTAEA  240
            ++++  ++ + V  +DD+ +K   TI   + V   ++ +  + KK     ++IAIPT   
Sbjct  159  MLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQ  218

Query  241  FHMRRIIDICKDSGLKFKIIPDMGELINGNVSVSAIRDLSFRDLLGREPVRLDQGRIGEY  300
             ++  I  IC+  G+ +  +P++ ++++G++ V+ ++ +   DLLGR+PV LD + I+  
Sbjct  219  KRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRE  278

Query  301  LENQVILITGAGGSIGSELCRQICRFNPATLVLYDNAETPLYEIDHEL-KNYFKQVNIVP  359
            L N+ IL+TGAGGSIGSE+CRQ+ +F+P  ++L +++E ++Y I++EL K Y +++++VP
Sbjct  279  LTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVP  338

Query  360  VLGDIRDRFQFSKALEAYSPVSVFHAAAYKHVPMLEIHPWEAVLNNIMGTVNVAECCKRL  419
            V++D++++ ++   ++ + P +V+HAAA KHVP++E +P EA+ NNI+GT NVAE  K  
Sbjct  339  VIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEG  398

Query  420  NVQRFVLMSTDKAVRPSSVMGASKRISEIFVQNQSTSFDHQTKFMIVRFGNVAGSAGSVV  479
            +V +FV++STDKAV PS+VMGA+KRI+E+ +Q+ +   + +T F+ VRFGNV GS GSV+
Sbjct  399  EVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNED-NSKTSFVAVRFGNVLGSRGSVI  457

Query  480  PLFKKQIRSGGPVTVTHPDVTRFFMTIPEACQLILQAGAMGKGGEIFILDMGRPVKIADM  539
            PLFK+QI SGGPVTVTHP++TR+FMTIPEA +L+LQAGA+++GGE+F+LDMG+PVKI D+
Sbjct  458  PLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDL  517

Query  540  AADMIRLSGYQPGKDIAIKYIGLRPGEKMFEELVAENEVTLPTEHDKI  587
            A ++IRLSG +   DI+I + G+RPGEK++EEL+  NE+      +KI
Sbjct  518  AKNLIRLSG-KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKI  564

266) Tbd_1871 in NC_007404


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  325 bits (1220),  Expect = 3e-90, Method: Compositional matrix adjust.
 Identities = 223/503 (45%), Positives = 358/503 (72%), Gaps = 15/503 (2%)

Query  60   FGLYRGIWRFASLPDLKRIvlaaglaallipvalvlFRVHAIVPRSVLI--LDPLLLVMV  117
            F LY+  W +AS+++L  ++ A   + ++  + + L+  ++   R  +I  +  LLL+  
Sbjct  62   FNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLI--  119

Query  118  MGGSRLAYRAWKEHRLASVLRPDSKPVLVAGAGSAADFLLRELARNPAG-FHVVGLLDDS  176
             GGSRL  R  +   + + +  + K+ LV GAG ++  L+RE+ R+     + V  +DD 
Sbjct  120  -GGSRLFWRVYRRYFIDNAV--EKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDD  176

Query  177  REKQGRLVQGvpvlgv-lddaavvaKRLGVDDVVLALPSAAHEIRKRITEACTGAGLNVM  235
            ++KQ   +     +   ++D + + K++ +  +++A+P+ ++   + I   C   G+++ 
Sbjct  177  KNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELF  236

Query  236  TVPSLEDLVGGRVSVSSLRRIELDDLLGRDPVQLDDSGLHGLLTGQVVMVTGAGGSIGAE  295
             +P++ED+++G + V++L+++E++DLLGRDPV+LD + +   LT + ++VTGAGGSIG+E
Sbjct  237  KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSE  296

Query  296  LCRQIARFAPAKLVLFEQSELALYAMEQELPRRHPE-LAVVPVIGDAKNAAWVNRVMEMH  354
            +CRQ+++F P K++L+ ++E ++Y+++QEL++   + +  VPVI+D +N +++  VM+  
Sbjct  297  ICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEF  356

Query  355  RPAIVFHAAAYKHVPLMENGNAWEAVKNNVLGTqvvaaaaqvhgvgKFVLISTDKAVNPT  414
            +P  V+HAAA KHVPLME  N+ EA++NN+LGT+ VA +A+   V+KFV+ISTDKAVNP+
Sbjct  357  KPYAVYHAAAHKHVPLMEY-NPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPS  415

Query  415  NVMGASKRLAEMACQAMQQRAGDAPTGTRFVSVRFGNVLGSSGSVIPKFQKQIEAGGPVT  474
            NVMGA+KR+AEM  Q+++    +  + T FV+VRFGNVLGS GSVIP F++QIE+GGPVT
Sbjct  416  NVMGATKRIAEMVIQSLN----EDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVT  471

Query  475  VTHPEITRYFMSIPEAAQLVLQAGLMGKGGEIFVLDMGEPVKIAELAKLMIRLSGADEAR  534
            VTHPE+TRYFM+IPEA++LVLQAG +++GGE+FVLDMG PVKI +LAK +IRLSG  E  
Sbjct  472  VTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEED  531

Query  535  IRIEYTGLRPGEKLYEELLADDE  557
            I IE++G+RPGEKLYEELL  +E
Sbjct  532  IGIEFSGIRPGEKLYEELLNKNE  554

267) Halsa_0607 in NC_014654


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  325 bits (1219),  Expect = 4e-90, Method: Compositional matrix adjust.
 Identities = 248/574 (44%), Positives = 395/574 (69%), Gaps = 35/574 (6%)

Query  14   LIIIDLLLINFALIFSFMLRFDENWLQ-YFRFSYFIAITII--------SFVILYFSSLY  64
            LIIID +++ F++++++ +      L+ YF+ +Y I + ++          ++ Y  +LY
Sbjct  13   LIIIDSFIVTFSVFLGYAI------LEPYFK-GYSIDLLVLSSVILLVSHHIFAYVFNLY  65

Query  65   NKMWQYASMSELYSIFKAALAINFVFVIYLY-------FFRVAFPRSIIAINLMSNIfll  117
            ++ W+YAS+SEL S++KA  +   V ++ +        F+R+ F   ++ + L++     
Sbjct  66   HRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGG----  121

Query  118  ggfrfslrllKDFLNRNQNKKSKSRVLiigagdaaeiiiREMHKHPELGKKIVGLVDDDP  177
             +  F     + F++   +KK+    L++GAG+++ ++IREM +  ++  + V  VDDD 
Sbjct  122  -SRLFWRVYRRYFIDNAVEKKAT---LVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDK  177

Query  178  DKQSLEIHG-YEVLGKTKKIPQLIEEYDVDEVIIAIPSAEGKTIKRLYKLSNKKDVKVKI  236
            +KQ + I     V G    IP+L+  + +  +IIAIP+   K ++ + K+ N  +V +  
Sbjct  178  NKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFK  237

Query  237  VPGVYEILKGDVSLNQIREVKVEDLLRRDQVDLITDEISDYLEEKTILVTGGGGSIGSEL  296
            +P + ++L G++ +N+++ V VEDLL RD V+L    IS  L +KTILVTG+GGSIGSE+
Sbjct  238  MPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEI  297

Query  297  CRQLAKFNPKEIIIFDINENNTYFLERDLEDEYPD-LKITSIIGSIRDKNKLQNLFREFE  355
            CRQ++KF+P+ II+++  EN+ Y ++++L   Y + + + ++I+ +++K ++ ++  EF 
Sbjct  298  CRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFK  357

Query  356  IDVAFHAAAHKHVPLMETSPEEAVKNNILGSRNVAEVAAEFKIDRFVLISTDKAVNPTNV  415
                +HAAAHKHVPLME +P+EA++NNILG++NVAE A E  + +FV+ISTDKAVNP+NV
Sbjct  358  PYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNV  417

Query  416  MGASKRAAEMIVQSIN-KKSETKFMAVRFGNVLGSQGSVIPLFKKQIANGGPLTVTHKDI  474
            MGA+KR AEM++QS+N  +S T F+AVRFGNVLGS+GSVIPLFK+QI +GGP+TVTH ++
Sbjct  418  MGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEM  477

Query  475  TRYFMTIPEASQLVIQAGALGEGGEVFVLDMGEPVKIMELAEDLINLSGLTPYEDIDIDV  534
            TRYFMTIPEAS+LV+QAGAL++GGEVFVLDMG PVKI++LA +LI LSG    EDI+I+ 
Sbjct  478  TRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKE-EDIGIEF  536

Query  535  VGLRPGEKLYEELLCNTEDNIATKHQRIFINNLE  568
             G+RPGEKLYEELL + E +     ++I+  +++
Sbjct  537  SGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVD  570

268) ELI_3080 in NC_014624


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  325 bits (1218),  Expect = 5e-90, Method: Compositional matrix adjust.
 Identities = 231/527 (44%), Positives = 372/527 (71%), Gaps = 22/527 (4%)

Query  63   FITGMYNTLWRYASIEELWQITFSVILANILTFVLYFAIGAGVP-TTVQILSFVFDLIMV  121
            ++  +Y+  W YAS+ EL  +  +V  + ++T++L   + +  P   + +++ + +L+++
Sbjct  60   YVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLI  119

Query  122  GAIRIFYRTGRR--IKQGVGGKGNSRNVLIVGAGEAGIKILRE-LAAGEMKSYVVGFVDD  178
            G+ R+F R  RR  I ++V  K+     L+VGAG++G  ++RE L + +M+   V  VDD
Sbjct  120  GGSRLFWRVYRRYFIDNAVEKKAT----LVVGAGQGGSVLIREMLRSQDMRMQPVLAVDD  175

Query  179  NVYKQKKKING-LTVLGGREDIPDIVEDEQVNEIIIALPSVPKKEMNEIAEICHKTGRPV  237
            +  KQK  I   + V G  EDIP++V   +++ IIIA+P++++K +NEI  IC+  G  +
Sbjct  176  DKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVEL  235

Query  238  RVLPSFDDILNYDVSLSKLRDLQIEDLLDRDEIHLDKSVISEFIRGKVVLVTGGAGSIGS  297
              +P+++D+L+ ++ +++L+ +++EDLL+RD ++LD ++IS  +  K +LVTG++GSIGS
Sbjct  236  FKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGS  295

Query  298  ELCRQIIKYQPKQLVILDIYENTlyylelelrryiheleieSGYGIRLDLE--ITSIRDK  355
            E+CRQ+ K++P+++++L+  EN++Y ++ EL            YG R+++   I+ +++K
Sbjct  296  EICRQVSKFDPQKIILLGHGENSIYSIHQELS---------KTYGNRIEFVPVIADVQNK  346

Query  356  ASVNSLFERYRPQVVFHAAAHKHVPLMEKTPKEAVKNNIFGTRNVLDACVEYQVEKFVQI  415
            + +  + + ++P  V+HAAAHKHVPLME  P EA++NNI+GT+NV ++  E +V KFV I
Sbjct  347  TRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMI  406

Query  416  STDKAVKPTNVMGTTKRICEMLIQ-LYDQHNQTEFVAVRFGNVLGSNGSVIPIFKEQIAN  474
            STDKAV+P+NVMG+TKRI EM+IQ L +++++T FVAVRFGNVLGS GSVIP+FK+QI +
Sbjct  407  STDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIES  466

Query  475  GGPLTVTHPDIERFFMTIPEATQLVLQAGSIAHGGEIFVLDMGEPVKIKDLAERMVRLSG  534
            GGP+TVTHP++ R+FMTIPEA++LVLQAG++A+GGE+FVLDMG PVKI DLA  ++RLSG
Sbjct  467  GGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG  526

Query  535  YEPYTEMPIVFSGLRPGEKLYEELSYDMAEFDKTRYKDIFVEKPEVF  581
                 ++ I FSG+RPGEKLYEEL        +  Y  I+  K + +
Sbjct  527  KKE-EDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHY  572

269) Bxe_A3780 in NC_007951


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  324 bits (1214),  Expect = 1e-89, Method: Compositional matrix adjust.
 Identities = 224/508 (45%), Positives = 355/508 (70%), Gaps = 8/508 (1%)

Query  62   IFGLYRGMWVFASLPDLVRISKAVIAGALVAMVVSVLVQPMPIvprsvlvvsplflflAM  121
            +F LY+  W +AS+++L+ + KAV ++++V  ++ V +         +  ++ +  +L +
Sbjct  61   VFNLYHRAWEYASVSELMSVLKAV-TSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLI  119

Query  122  GGSRALYRATKEFYLYGGLVAQGKPVVVLGAGNAGASLARELSRSSEWRLVGLL--DDDV  179
            GGSR + R  + +++  ++  + K+ +V+GAG++G+ L RE+ RS + R+  +L  DDD 
Sbjct  120  GGSRLFWRVYRRYFIDNAV--EKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDK  177

Query  180  SKHGREIYG-YKVFGSISELPQLAETLKTEYAIIAIPSATVDVQRRVATLCVRAGVRALV  238
            +K+   I    KV G + ++P+L   ++    IIAIP+ +      +  +C   GV  + 
Sbjct  178  NKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFK  237

Query  239  LPALTDVTQGQAFLSRVRQIDLEDLLGRDPINIDTPHVEALLHDRVVMVTGAGGSIGSEL  298
            +P + DV  G+  ++ ++++++EDLLGRDP+++D + +   L ++ ++VTGAGGSIGSE+
Sbjct  238  MPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEI  297

Query  299  CRQILRFQPAQLIAYDLSEFAIYRLTEELSERFPG-VSVIPVIGDAKDSLLLDEVMSRHT  357
            CRQ+ +F+P ++I  + +E +IY + +ELS  +   +  +PVI+D ++   + EVM+   
Sbjct  298  CRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFK  357

Query  358  PHIVFHAAAYKHVPLMEEQNAWQAVRNNVLGTYRVGRAAIRHDVKHFVLISTDKAVNPTN  417
            P  V+HAAA KHVPLME  N+ +A+RNN+LGT  V+ +A   +V  FV+ISTDKAVNP+N
Sbjct  358  PYAVYHAAAHKHVPLME-YNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSN  416

Query  418  VMGASKRLAEMACQALQQTSPRTQFETVRFGNVLGSAGSVIPKFQQQIAKGGPVTVTHPE  477
            VMGA+KR+AEM  Q+L++ +++T F +VRFGNVLGS GSVIP F++QI  GGPVTVTHPE
Sbjct  417  VMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPE  476

Query  478  ITRFFMTIPEASQLVLQASSMGHGGEIFILDMGEPVKIVDLARDLIRLYGFNEEQIRIVF  537
            +TR+FMTIPEAS+LVLQA+++++GGE+F+LDMG PVKIVDLA++LIRL G +EE+I I F
Sbjct  477  MTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEF  536

Query  538  TGLRPGEKLYEELLACDETTTRTPHPKL  565
            +G+RPGEKLYEELL  +E   +    K+
Sbjct  537  SGIRPGEKLYEELLNKNEIHPQQVYEKI  564

270) Bamb_0765 in NC_008390


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  324 bits (1214),  Expect = 1e-89, Method: Compositional matrix adjust.
 Identities = 224/539 (42%), Positives = 372/539 (70%), Gaps = 12/539 (2%)

Query  62   LFGLYRGLWVFASLPDLMRISKavggggvivmigavmFQPSPIIPRSVLIVSPLMLFLAM  121
            +F LY+  W +AS+++LM + KAV ++ V+ ++   ++ + + + R + +++ +M +L +
Sbjct  61   VFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLR-LYFITWMMHLLLI  119

Query  122  GGARALYRATKEFYLYGGLVGQGKPVLVLGAGTAGASLARELSRSGEWRLVGLL--DDDV  179
            GG+R + R  + +++  ++  + K+ LV+GAG +G+ L RE+ RS + R+  +L  DDD 
Sbjct  120  GGSRLFWRVYRRYFIDNAV--EKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDK  177

Query  180  TKQGREIYG-YKVLGSFNDLKHWTDAMKIEYAIIAIPSASVETQRRVATLCVRAGVKAMV  238
             KQ   I    KV G  +D+ +     +I   IIAIP+ S      +  +C   GV    
Sbjct  178  NKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFK  237

Query  239  LPSLTALMPGQGFLSQVRNIDLEDLLGRDAVTIDTPHVEALLRGRVVMVTGAGGSIGSEL  298
            +P++  +++G+  +++++++++EDLLGRD+V +D + +   L  + ++VTGAGGSIGSE+
Sbjct  238  MPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEI  297

Query  299  CRQILRFAPAQLVAFDLSEYAMYRLAEELRERFPDQ-PVVPIIGDAKDSLLLDQVMSRHA  357
            CRQ+ +F P +++ ++ +E ++Y + +EL   + ++   VP+I+D ++   + +VM+   
Sbjct  298  CRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFK  357

Query  358  PHIVFHAAAYKHVPLMEEHNAWQALRNNVLGTYRVACAAIRHDVRHFVLISTDKAVNPTN  417
            P  V+HAAA KHVPLME  N+ +A+RNN+LGT  VA +A   +V  FV+ISTDKAVNP+N
Sbjct  358  PYAVYHAAAHKHVPLME-YNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSN  416

Query  418  VMGASKRLAEMVCQALQQTSGGTQFETVRFGNVLGSAGSVIPKFQQQIAKGGPVTVTHPE  477
            VMGA+KR+AEMV Q+L++ ++ T F +VRFGNVLGS GSVIP F++QI  GGPVTVTHPE
Sbjct  417  VMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPE  476

Query  478  ITRFFMTIPEASQLVLQASSMGHGGEIFILEMGQPVRIVDLARDLIRLYGFSEGQIRIDF  537
            +TR+FMTIPEAS+LVLQA+++++GGE+F+L+MG+PV+IVDLA++LIRL G  E +I I+F
Sbjct  477  MTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEF  536

Query  538  TGLRPGEKLYEELLADDETTTRTPHPKL---RIAR-AREVPDHLLDELLPWLMQRRVLS  592
            +G+RPGEKLYEELL  +E   +    K+   ++ +  +   D ++++L+  + + ++L 
Sbjct  537  SGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLK  595

271) CLD_1431 in NC_010516


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  324 bits (1217),  Expect = 6e-90, Method: Compositional matrix adjust.
 Identities = 245/540 (46%), Positives = 374/540 (70%), Gaps = 20/540 (3%)

Query  65   LYSSIWKYASVEELMsiiysvsisniifiiysyfinyKILESNYYRFPFTVHIIFWILSI  124
            LY   W YASV ELMS++ +V+ S ++ ++   ++     ES + R+ F      W++ +
Sbjct  64   LYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLIS---ESPFLRLYFIT----WMMHL  116

Query  125  VSLGGTRFIYRVIEDKECNKNKCNCDSKEKKlliigagdaaaliiKEIKRNRELNYSIIG  184
            + +GG+R++ RV       +   +     K  L++GAG++++++I+E+ R++++    + 
Sbjct  117  LLIGGSRLFWRV-----YRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVL  171

Query  185  LIDDDIEKLGKRING-IPVLGGResiikisknkkideiiLAIPSASSSTKSEIVSICKET  243
             +DDD +K    I   + V G  E I  + K+ +I  II+AIP+ S    +EI  IC+  
Sbjct  172  AVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIE  231

Query  244  SCKLKTLPSMDKVIQGKFNMSKLRDVSIEDLLGREEVKLDDSGINKYIKDKVVLVTGGGG  303
            +  L  +P+++ V+ G +++++L+ V +EDLLGR+ V LD + I++ + +K +LVTG+GG
Sbjct  232  GVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGG  291

Query  304  SIGSELCRQIVKFSPKKLLILDIYENNAYDVQMELNYKYPE-LDKAVIIASIRDEKRLKD  362
            SIGSE+CRQ+ KF P+K+++L+  EN+ Y ++ EL+  Y + ++   +IA +++  R+ +
Sbjct  292  SIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILE  351

Query  363  IFSSYKPDVVFHAAAHKHVPLMEENPAESIKNNVIGTYNLIKCAHEFGTERFVQISTDKA  422
            + + +KP  V+HAAAHKHVPLME NP E+I+NN++GT N+   A E    +FV ISTDKA
Sbjct  352  VMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKA  411

Query  423  VNPTNIMGATKRFCEIMIQAF-DKISKTEFVAVRFGNVLGSNGSVIPLFKKQIAHGGPVT  481
            VNP+N+MGATKR+ E++IQ++ +  SKT FVAVRFGNVLGS GSVIPLFK+QI  GGPVT
Sbjct  412  VNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVT  471

Query  482  VTHPEINRYFMTIPEAAQLVIQAGAMAKGGEIFVLDMGRPVKIVDLAKDLITLSGYKPGE  541
            VTHPE+ RYFMTIPEA++LV+QAGA+A+GGE+FVLDMG+PVKIVDLAK+LI LSG K  E
Sbjct  472  VTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEE  530

Query  542  DIKIEYTGLRPGEKLYEELLMDEIALTSTGHNKIF---VEKPMENNIDF-VEKSIEEFKK  597
            DI IE++G+RPGEKLYEELL  +        +KI+   V+  +  ++D+ VE  I++F K
Sbjct  531  DIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSK  590

272) BC1003_0777 in NC_014539


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  324 bits (1216),  Expect = 7e-90, Method: Compositional matrix adjust.
 Identities = 227/509 (45%), Positives = 355/509 (70%), Gaps = 9/509 (1%)

Query  62   IFGLYRGMWVFASLPDLVRISKAVIAGALVAMVVSVLVQpspivprsvlvvsplflflAM  121
            +F LY+  W +AS+++L+ + KAV ++++V  ++ V +  S      +  ++ +  +L +
Sbjct  61   VFNLYHRAWEYASVSELMSVLKAV-TSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLI  119

Query  122  GGSRALYRATKEFYLYGGLVAQGKPVVVLGAGNAGASLARELSRSSEWRLVGLL--DDDV  179
            GGSR + R  + +++  +   + K+ +V+GAG++G+ L RE+ RS + R+  +L  DDD 
Sbjct  120  GGSRLFWRVYRRYFI--DNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDK  177

Query  180  SKHGREIYG-YKVLGSISELPRMAEELKTEYAIIAIPSASVDVQRRVATLCVRAGVRALV  238
            +K+   I    KV G + ++P +   ++    IIAIP+ S      +  +C   GV  + 
Sbjct  178  NKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFK  237

Query  239  LPALTDVSQGQAFLSRVRQIDLEDLLGRDPVMIDTDHVEALLKNRVVMVTGAGGSIGSEL  298
            +P + DV  G+  ++ ++++++EDLLGRDPV +D   +   L N+ ++VTGAGGSIGSE+
Sbjct  238  MPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEI  297

Query  299  CRQILRFGPVQLVAFDISEFSIYRLNEELSDKYPE-VSVVPIIGDVKDSLLLDQVMARYT  357
            CRQ+ +F+P +++ ++ +E SIY +++ELS  Y + +  VP+I+DV++   + +VM  + 
Sbjct  298  CRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFK  357

Query  358  PHIVFHAAAYKHVPLMEEVNAWQAVRNNVLGTYRVARAAIRHDVAHFVLISTDKAVNPTN  417
            P  V+HAAA KHVPLME  N+ +A+RNN+LGT  VA +A   +V+ FV+ISTDKAVNP+N
Sbjct  358  PYAVYHAAAHKHVPLME-YNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSN  416

Query  418  VMGASKRLAEMVCSSLQQQGTRRTQFETVRFGNVLGSAGSVIPKFQEQIARGGPVTVTHP  477
            VMGA+KR+AEMV  SL+++ ++ T F +VRFGNVLGS GSVIP F++QI  GGPVTVTHP
Sbjct  417  VMGATKRIAEMVIQSLNEDNSK-TSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHP  475

Query  478  EITRFFMTIPEASQLVLQASSMGHGGEIFILDMGKPVRIADLAHDLIRLYGFTDEQIRVV  537
            E+TR+FMTIPEAS+LVLQA+++++GGE+F+LDMGKPV+I DLA +LIRL G  +E+I + 
Sbjct  476  EMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIE  535

Query  538  FTGLRPGEKLYEELLADDETTTRTPHPKL  566
            F+G+RPGEKLYEELL  +E   +    K+
Sbjct  536  FSGIRPGEKLYEELLNKNEIHPQQVYEKI  564

273) ROI_04900 in NC_021040


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  323 bits (1213),  Expect = 1e-89, Method: Compositional matrix adjust.
 Identities = 241/499 (49%), Positives = 349/499 (70%), Gaps = 9/499 (1%)

Query  70   LRLYSSLWSYAGALEMMYVVSACILDAIVVAALILVRNWGDMFPVPRSFYILYGLFLLVL  129
            + LY   W YA+  E+M V+ A     +V   L+ +      F   R ++I   + LL L
Sbjct  62   FNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFL--RLYFITWMMHLL-L  118

Query  130  IMGCRYSYRGLRAIRNMRRDGTYRRNVLVIGAGEAGNQLIKEINNSRYvkkkvvgviddd  189
            I G R   R  R  R    ++  ++  LV+GAG++G+ LI+E+  S+ ++ + V  +DDD
Sbjct  119  IGGSRLFWRVYR--RYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDD  176

Query  190  kTKIGNYIHG-AKVIGDRSCIRDKVLELHVHEIIIAMPSASPKQMKGILDICKETGCELK  248
            K K    I    KV G    I + V  +++  IIIA+P+ S K+++ I  IC+  G EL 
Sbjct  177  KNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELF  236

Query  249  RLPGIYQLVNGEVGISKLKDVDVNDLLGREPVMVNLESIMGYVSGKVIMVTGGGGSIGSE  308
            ++P I ++++GE+ +++LK V+V+DLLGR+PV +++  I   ++ K I+VTG+GGSIGSE
Sbjct  237  KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSE  296

Query  309  LCRQIAGHKPKQLIILDIYENTTYDIQNELKVKFPD-LDLVVLIGSVRNTNRMNWIFETY  367
            +CRQ++   P+++I+L+  EN+ Y I++EL   + + +++V +I+ V+N  R+  + + +
Sbjct  297  ICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEF  356

Query  368  HPEIIYHAAAHKHVPLMEESPNEAIKNNVLGTWKIVQAADRYHVKRFVMISTDKAVNPTN  427
             P  +YHAAAHKHVPLME +P+EAI+NN+LGT ++ ++A   +V +FVMISTDKAVNP+N
Sbjct  357  KPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSN  416

Query  428  IMGASKRICEMIIQTYN-KRSETEYVAVRFGNVLGSNGSVIPLFKKQIERGGPVTVTDPN  486
            +MGA+KRI EM+IQ+ N   S T +VAVRFGNVLGS GSVIPLFK+QIE GGPVTVT+P+
Sbjct  417  VMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPE  476

Query  487  IVRYFMTIPEAVSLVLQAGAYAKGGEIFVLDMGEPVKILDLARNLILLSGHKPDEDIQIV  546
            + RYFMTIPEA  LVLQAGA A+GGE+FVLDMG PVKI+DLA+NLI LSG K +EDI I 
Sbjct  477  MTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKK-EEDIGIE  535

Query  547  FTGLRPGEKLYEEMLMDEE  565
            F+G+RPGEKLYEE+L  +E
Sbjct  536  FSGIRPGEKLYEELLNKNE  554

274) CLJ_B3375 in NC_012658


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  323 bits (1210),  Expect = 2e-89, Method: Compositional matrix adjust.
 Identities = 240/518 (47%), Positives = 362/518 (70%), Gaps = 16/518 (3%)

Query  65   LYSSIWKYASVEELMsiiysvsisniifiiysyfinyKILESNYYRFPFTVHIIFWILSI  124
            LY   W YASV ELMS++ +V+ S ++ ++   ++     ES + R+ F      W++ +
Sbjct  64   LYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLIS---ESPFLRLYFIT----WMMHL  116

Query  125  VSLGGTRFIYRVIEDKECNKNKCNCDSKEKKlliigagdaaaliiKEIKRNRELNYSIIG  184
            + +GG+R++ RV       +   +     K  L++GAG++++++I+E+ R++++    + 
Sbjct  117  LLIGGSRLFWRV-----YRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVL  171

Query  185  LIDDDIEKLGKRING-IPVLGGResiikisknkkideiiLAIPSASSSTKSEIVSICKET  243
             +DDD +K    I   + V G  E I  + K+ +I  II+AIP+ S    +EI  IC+  
Sbjct  172  AVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIE  231

Query  244  SCKLKTLPSMDKVIQGKFNMSKLRDVSIEDLLGREEVKLDDSGINKYIKDKVVLVTGGGG  303
            +  L  +P+++ V+ G +++++L+ V +EDLLGR+ V LD + I++ + +K +LVTG+GG
Sbjct  232  GVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGG  291

Query  304  SIGSELCRQIVKFSPKKLLILDIYENNAYDVQMELNYKYPE-LDKAVIIASIRDEKRLKD  362
            SIGSE+CRQ+ KF P+K+++L+  EN+ Y ++ EL+  Y + ++   +IA +++  R+ +
Sbjct  292  SIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILE  351

Query  363  IFSVYKPDVVFHAAAHKHVPLMEENPAESIKNNVIGTYNLIKCAHEFGIERFVQISTDKA  422
            + + +KP  V+HAAAHKHVPLME NP E+I+NN++GT N+   A E  + +FV ISTDKA
Sbjct  352  VMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKA  411

Query  423  VNPTNIMGATKRFCEIMIQAF-DKISKTEFVAVRFGNVLGSNGSVIPLFKKQISHGGPVT  481
            VNP+N+MGATKR+ E++IQ++ +  SKT FVAVRFGNVLGS GSVIPLFK+QI  GGPVT
Sbjct  412  VNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVT  471

Query  482  VTHPEINRYFMTIPEAAQLVIQAGAMAKGGEIFVLDMGKPVKIVDLAKDLITLSGYKPGE  541
            VTHPE+ RYFMTIPEA++LV+QAGA+A+GGE+FVLDMGKPVKIVDLAK+LI LSG K  E
Sbjct  472  VTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEE  530

Query  542  DIKIEYTGLRPGEKLYEELLMDEIALTSTGHNKIFVEK  579
            DI IE++G+RPGEKLYEELL  +        +KI+  K
Sbjct  531  DIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGK  568

275) capD in NC_009706


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  323 bits (1210),  Expect = 2e-89, Method: Compositional matrix adjust.
 Identities = 242/523 (47%), Positives = 366/523 (70%), Gaps = 25/523 (4%)

Query  57   FNLYNNIWKYASVEELISIVYSVSLSNIIFIIYSYFVNYKILENRYYRFPYTVHIILWIL  116
            FNLY+  W YASV EL+S++ +V+ S ++ ++     +  I E+ + R+ +    I W++
Sbjct  62   FNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLV---SLLISESPFLRLYF----ITWMM  114

Query  117  SVLALGGIRFTYRLSGDKK---EENCTKRRHKNLLIIGAGDAAAMLIKEIKKHTNFNYNI  173
             +L +GG R+  R+   ++   ++   K   K  L++GAG+++++LI+E+ +  +   + 
Sbjct  115  HLLLIGGSRLFWRVY--RRYFIDNAVEK---KATLVVGAGQGGSVLIREMLRSQDMRMQP  169

Query  174  IGLIDDDKSKRGKLIKG-IEVLGGRNEIIEVCKNRQIEEIIIAMPSAELHTKREIINICK  232
            +  +DDDK+K+   I   + V G  ++I E+ K+ +I  IIIA+P+       EI +IC+
Sbjct  170  VLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICN  229

Query  233  NTKCKLKTLPGIYEMIDGNINITKLRDVNIEDLLGREEVKLNTQNISKYIKNKIIMVTGG  292
                 L  +P I +++ G++++ +L+ V++EDLLGR+ V L+   IS+ + NK I+VTG+
Sbjct  230  IEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGA  289

Query  293  GGSIGSELCRQIAKFQPKQLLILDIYENNVYDLEMELNYNYIDLNKKI----IIASIRDG  348
            GGSIGSE+CRQ++KF+P+++++L+  EN++Y ++ EL+  Y    ++I    +IA +++ 
Sbjct  290  GGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTY---GNRIEFVPVIADVQNK  346

Query  349  GRLKDVFRKYTPQVVFHAAAHKHVPLMEGNPQEAVKNNIIGTYEVLKCCDEFKVEKFVQI  408
             R+ +V   + P  V+HAAAHKHVPLME NP+EA++NNI+GT +V     E  V KFV I
Sbjct  347  TRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMI  406

Query  409  STDKAVNPTNVMGATKRFCEIMVQAFNE-VSKTEYVAVRFGNVLGSNGSVIPLFKRQIAH  467
            STDKAVNP+NVMGATKR+ E+++Q++NE  SKT +VAVRFGNVLGS GSVIPLFK QI  
Sbjct  407  STDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIES  466

Query  468  GGPVTVTHPEINRFFMTIPEaaqlviqagaiaaggEIFVLDMGKPVKIVDLARDLITLSG  527
            GGPVTVTHPE+ R+FMTIPEA++LV+QAGA+A GGE+FVLDMGKPVKIVDLA++LI LSG
Sbjct  467  GGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG  526

Query  528  YEPDMDIKIEYTGLRPGEKLYEELLMNEVALTSTEHDKIFIEK  570
               + DI IE++G+RPGEKLYEELL ++        +KI+  K
Sbjct  527  -KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGK  568

276) CKR_2815 in NC_011837


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  323 bits (1210),  Expect = 2e-89, Method: Compositional matrix adjust.
 Identities = 242/523 (47%), Positives = 366/523 (70%), Gaps = 25/523 (4%)

Query  57   FNLYNNIWKYASVEELISIVYSVSLSNIIFIIYSYFVNYKILENRYYRFPYTVHIILWIL  116
            FNLY+  W YASV EL+S++ +V+ S ++ ++     +  I E+ + R+ +    I W++
Sbjct  62   FNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLV---SLLISESPFLRLYF----ITWMM  114

Query  117  SVLALGGIRFTYRLSGDKK---EENCTKRRHKNLLIIGAGDAAAMLIKEIKKHTNFNYNI  173
             +L +GG R+  R+   ++   ++   K   K  L++GAG+++++LI+E+ +  +   + 
Sbjct  115  HLLLIGGSRLFWRVY--RRYFIDNAVEK---KATLVVGAGQGGSVLIREMLRSQDMRMQP  169

Query  174  IGLIDDDKSKRGKLIKG-IEVLGGRNEIIEVCKNRQIEEIIIAMPSAELHTKREIINICK  232
            +  +DDDK+K+   I   + V G  ++I E+ K+ +I  IIIA+P+       EI +IC+
Sbjct  170  VLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICN  229

Query  233  NTKCKLKTLPGIYEMIDGNINITKLRDVNIEDLLGREEVKLNTQNISKYIKNKIIMVTGG  292
                 L  +P I +++ G++++ +L+ V++EDLLGR+ V L+   IS+ + NK I+VTG+
Sbjct  230  IEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGA  289

Query  293  GGSIGSELCRQIAKFQPKQLLILDIYENNVYDLEMELNYNYIDLNKKI----IIASIRDG  348
            GGSIGSE+CRQ++KF+P+++++L+  EN++Y ++ EL+  Y    ++I    +IA +++ 
Sbjct  290  GGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTY---GNRIEFVPVIADVQNK  346

Query  349  GRLKDVFRKYTPQVVFHAAAHKHVPLMEGNPQEAVKNNIIGTYEVLKCCDEFKVEKFVQI  408
             R+ +V   + P  V+HAAAHKHVPLME NP+EA++NNI+GT +V     E  V KFV I
Sbjct  347  TRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMI  406

Query  409  STDKAVNPTNVMGATKRFCEIMVQAFNE-VSKTEYVAVRFGNVLGSNGSVIPLFKRQIAH  467
            STDKAVNP+NVMGATKR+ E+++Q++NE  SKT +VAVRFGNVLGS GSVIPLFK QI  
Sbjct  407  STDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIES  466

Query  468  GGPVTVTHPEINRFFMTIPEaaqlviqagaiaaggEIFVLDMGKPVKIVDLARDLITLSG  527
            GGPVTVTHPE+ R+FMTIPEA++LV+QAGA+A GGE+FVLDMGKPVKIVDLA++LI LSG
Sbjct  467  GGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG  526

Query  528  YEPDMDIKIEYTGLRPGEKLYEELLMNEVALTSTEHDKIFIEK  570
               + DI IE++G+RPGEKLYEELL ++        +KI+  K
Sbjct  527  -KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGK  568

277) BUPH_05536 in NC_018695


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  323 bits (1212),  Expect = 2e-89, Method: Compositional matrix adjust.
 Identities = 226/509 (45%), Positives = 353/509 (70%), Gaps = 9/509 (1%)

Query  65   IFGLYRGMWVFASLPDLLRISKAVIAGALVAMVVSVLVQpspivprsvlvvsplflflAM  124
            +F LY+  W +AS+++L+ + KAV ++++V  ++ V +  S      +  ++ +  +L +
Sbjct  61   VFNLYHRAWEYASVSELMSVLKAV-TSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLI  119

Query  125  GGSRALYRATKEFYLYGGLVAQGKPVVVLGAGNAGASLARELSRSSEWRLVGLL--DDDV  182
            GGSR + R  + +++  +   + K+ +V+GAG++G+ L RE+ RS + R+  +L  DDD 
Sbjct  120  GGSRLFWRVYRRYFI--DNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDK  177

Query  183  AKHGREIYG-YKVLGSISELPRMAEELKTEYAIIAIPSASVDVQRRVATLCVRAGVRALV  241
             K+   I    KV G + ++P +   ++    IIAIP+ S      +  +C   GV  + 
Sbjct  178  NKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFK  237

Query  242  LPALTAVSQGQAFLSRVRQIDLEDLLGRDPVMIDTDHVEALLKNRVVMVTGAGGSIGSEL  301
            +P +  V  G+  ++ ++++++EDLLGRDPV +D   +   L N+ ++VTGAGGSIGSE+
Sbjct  238  MPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEI  297

Query  302  CRQILRFGPVQLVAFDISEFSIYRLNEELSDKYPE-VSVVPIIGDVKDSLLLDQVMARYT  360
            CRQ+ +F+P +++ ++ +E SIY +++ELS  Y + +  VP+I+DV++   + +VM  + 
Sbjct  298  CRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFK  357

Query  361  PHIVFHAAAYKHVPLMEEVNAWQAVRNNVLGTYRVARAAIRHDVAHFVLISTDKAVNPTN  420
            P  V+HAAA KHVPLME  N+ +A+RNN+LGT  VA +A   +V+ FV+ISTDKAVNP+N
Sbjct  358  PYAVYHAAAHKHVPLME-YNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSN  416

Query  421  VMGASKRLAEMVCSSLQQQGTRRTQFETVRFGNVLGSAGSVIPKFQEQIARGGPVTVTHP  480
            VMGA+KR+AEMV  SL+++ ++ T F +VRFGNVLGS GSVIP F++QI  GGPVTVTHP
Sbjct  417  VMGATKRIAEMVIQSLNEDNSK-TSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHP  475

Query  481  EITRFFMTIPEASQLVLQASSMGHGGEIFILDMGKPVRIADLAHDLIRLYGFTEEQIRVV  540
            E+TR+FMTIPEAS+LVLQA+++++GGE+F+LDMGKPV+I DLA +LIRL G  EE+I + 
Sbjct  476  EMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIE  535

Query  541  YTGLRPGEKLYEELLADDETTTRTPHPKL  569
            ++G+RPGEKLYEELL  +E   +    K+
Sbjct  536  FSGIRPGEKLYEELLNKNEIHPQQVYEKI  564

278) RO1_35260 in NC_021012


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  322 bits (1208),  Expect = 3e-89, Method: Compositional matrix adjust.
 Identities = 241/499 (49%), Positives = 348/499 (70%), Gaps = 9/499 (1%)

Query  70   LRLYSSLWSYAGALEMMYVVSACILDAIVVAALILVRNWGDMFPVPRSFYILYGLFLLVL  129
            + LY   W YA+  E+M V+ A     +V   L+ +      F   R ++I   + LL L
Sbjct  62   FNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFL--RLYFITWMMHLL-L  118

Query  130  IMGCRYSYRGLRAIRNMRRDGTYRRNVLVIGAGEAGNQLIKEINNSRYvkkkvvgviddd  189
            I G R   R  R  R    ++  ++  LV+GAG++G+ LI+E+  S+ ++ + V  +DDD
Sbjct  119  IGGSRLFWRVYR--RYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDD  176

Query  190  kTKIGNYIHG-AKVIGDRSCIRDKVLELHVHEIIIAMPSAYPKQMKGILDICKETGCELK  248
            K K    I    KV G    I + V  +++  IIIA+P+   K+++ I  IC+  G EL 
Sbjct  177  KNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELF  236

Query  249  RLPGIYQLVNGEVGISKLKDVDVNDLLGREPVMVNLESIMGYVSGKVIMVTGGGGSIGSE  308
            ++P I ++++GE+ +++LK V+V+DLLGR+PV +++  I   ++ K I+VTG+GGSIGSE
Sbjct  237  KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSE  296

Query  309  LCRQIAGHKPKQLIILDIYENTTYDIQNELKVKFPD-LDLVVLIGSVRNTNRMNWIFETY  367
            +CRQ++   P+++I+L+  EN+ Y I++EL   + + +++V +I+ V+N  R+  + + +
Sbjct  297  ICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEF  356

Query  368  HPEIIYHAAAHKHVPLMEESPNEAIKNNVLGTWKIVQAADRYHVKRFVMISTDKAVNPTN  427
             P  +YHAAAHKHVPLME +P+EAI+NN+LGT ++ ++A   +V +FVMISTDKAVNP+N
Sbjct  357  KPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSN  416

Query  428  IMGASKRICEMIIQTYN-KRSETEYVAVRFGNVLGSNGSVIPLFKKQIERGGPVTVTDPN  486
            +MGA+KRI EM+IQ+ N   S T +VAVRFGNVLGS GSVIPLFK+QIE GGPVTVT+P+
Sbjct  417  VMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPE  476

Query  487  IVRYFMTIPEAVSLVLQAGAYAKGGEIFVLDMGEPVKILDLAKNLILLSGHKPDEDIQIV  546
            + RYFMTIPEA  LVLQAGA A+GGE+FVLDMG PVKI+DLAKNLI LSG K +EDI I 
Sbjct  477  MTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKK-EEDIGIE  535

Query  547  FTGLRPGEKLYEEMLMDEE  565
            F+G+RPGEKLYEE+L  +E
Sbjct  536  FSGIRPGEKLYEELLNKNE  554

279) CDBI1_13495 in NC_017179


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  322 bits (1209),  Expect = 3e-89, Method: Compositional matrix adjust.
 Identities = 244/533 (46%), Positives = 377/533 (71%), Gaps = 19/533 (3%)

Query  68   HIVSFRLFKCYNTLWRYAGEEEIISIFVATLAYLIPIYIINKLLGFDYPIM-FYVLNTIF  126
            HI ++ +F+ Y+  W YA+  E++S++ A  + ++   ++  LL  + P++ +Y +  + 
Sbjct  56   HIFAY-VFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMM  114

Query  127  IIMFTSGARIAYRAIRIVMNKTYSRGKVSN--ILIIGAGDAGEMVIQELKRNSELkkvav  184
             +++ +G+R+  R  R    + +    V +   L++GAG++G ++I+E+ R+ +++  +V
Sbjct  115  HLLLIGGSRLFWRVYR----RYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPV  170

Query  185  aiidddkdkiG-RIIHNVKIVGTTSDIKAVVEKYNVDEIIFSIANiekrrkkeiiDICKN  243
              +DDDK+K    I + VK+ G   DI  +V K+ +  II++I+ + ++R +EI  IC+ 
Sbjct  171  LAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNI  230

Query  244  TNCKIKTIPGIYEIIDGKVDIKQIREVEIEDLLGREPIKTNLREISNYIEGKVILitggg  303
                +  +P I +++ G +++++++ VE+EDLLGR+P+  ++  IS  +  K IL+TG+G
Sbjct  231  EGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAG  290

Query  304  gsigsELCRQIAGFNPKELIIVDNYENNAYSIQQELLRKYKNKLDLKTVIASIREEKRMD  363
            GSIGSE+CRQ++ F+P+ +I++++ EN+ YSI+QEL + Y N++++  VIA +++  R+ 
Sbjct  291  GSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRIL  350

Query  364  EIFNKYKPEVVFHAAAHKHVPLMESSPGEAIKNNIFGTLNIAGLSSKYRAKKFVLISTDK  423
            E+ N +KP  V+HAAAHKHVPLME +P EAI+NNI+GT N+A  +      KFV+ISTDK
Sbjct  351  EVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDK  410

Query  424  AVNPTNIMGATKRAAEMIIQTMNAE-SQTEFVAVRFGNVLGSNGSVIPLFKKQIEDGGPV  482
            AVNP+N+MGATKR AEM+IQ++N + S+T FVAVRFGNVLGS GSVIPLFK+QIE GGPV
Sbjct  411  AVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPV  470

Query  483  TVTHPDIIRYFMTIPEAVGLVIQAGAMAKGGEIFVLDMGEPVRILDLAKNLIKFSGFEPD  542
            TVTHP++ RYFMTIPEA  LV+QAGA+A+GGE+FVLDMG PV+I+DLAKNLI++SG   +
Sbjct  471  TVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKE  529

Query  543  VDIKIEFSGLRPGEKLYEELLMSEEGLLDTEHKKIFIGRPIDVDREKITKYLK  595
             DI IEFSG+RPGEKLYEELL  +E   +    KI+        R K+  Y+K
Sbjct  530  EDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIY--------RGKVDHYIK  574

280) CD196_2610 in NC_013315


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  322 bits (1209),  Expect = 3e-89, Method: Compositional matrix adjust.
 Identities = 244/533 (46%), Positives = 377/533 (71%), Gaps = 19/533 (3%)

Query  68   HIVSFRLFKCYNTLWRYAGEEEIISIFVATLAYLIPIYIINKLLGFDYPIM-FYVLNTIF  126
            HI ++ +F+ Y+  W YA+  E++S++ A  + ++   ++  LL  + P++ +Y +  + 
Sbjct  56   HIFAY-VFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMM  114

Query  127  IIMFTSGARIAYRAIRIVMNKTYSRGKVSN--ILIIGAGDAGEMVIQELKRNSELkkvav  184
             +++ +G+R+  R  R    + +    V +   L++GAG++G ++I+E+ R+ +++  +V
Sbjct  115  HLLLIGGSRLFWRVYR----RYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPV  170

Query  185  aiidddkdkiG-RIIHNVKIVGTTSDIKAVVEKYNVDEIIFSIANiekrrkkeiiDICKN  243
              +DDDK+K    I + VK+ G   DI  +V K+ +  II++I+ + ++R +EI  IC+ 
Sbjct  171  LAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNI  230

Query  244  TNCKIKTIPGIYEIIDGKVDIKQIREVEIEDLLGREPIKTNLREISNYIEGKVILitggg  303
                +  +P I +++ G +++++++ VE+EDLLGR+P+  ++  IS  +  K IL+TG+G
Sbjct  231  EGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAG  290

Query  304  gsigsELCRQIAGFNPKELIIVDNYENNAYSIQQELLRKYKNKLDLKTVIASIREEKRMD  363
            GSIGSE+CRQ++ F+P+ +I++++ EN+ YSI+QEL + Y N++++  VIA +++  R+ 
Sbjct  291  GSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRIL  350

Query  364  EIFNKYKPEVVFHAAAHKHVPLMESSPGEAIKNNIFGTLNIAGLSSKYRAKKFVLISTDK  423
            E+ N +KP  V+HAAAHKHVPLME +P EAI+NNI+GT N+A  +      KFV+ISTDK
Sbjct  351  EVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDK  410

Query  424  AVNPTNIMGATKRAAEMIIQTMNAE-SQTEFVAVRFGNVLGSNGSVIPLFKKQIEDGGPV  482
            AVNP+N+MGATKR AEM+IQ++N + S+T FVAVRFGNVLGS GSVIPLFK+QIE GGPV
Sbjct  411  AVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPV  470

Query  483  TVTHPDIIRYFMTIPEAVGLVIQAGAMAKGGEIFVLDMGEPVRILDLAKNLIKFSGFEPD  542
            TVTHP++ RYFMTIPEA  LV+QAGA+A+GGE+FVLDMG PV+I+DLAKNLI++SG   +
Sbjct  471  TVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKE  529

Query  543  VDIKIEFSGLRPGEKLYEELLMSEEGLLDTEHKKIFIGRPIDVDREKITKYLK  595
             DI IEFSG+RPGEKLYEELL  +E   +    KI+        R K+  Y+K
Sbjct  530  EDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIY--------RGKVDHYIK  574

281) CDR20291_2657 in NC_013316


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  322 bits (1209),  Expect = 3e-89, Method: Compositional matrix adjust.
 Identities = 244/533 (46%), Positives = 377/533 (71%), Gaps = 19/533 (3%)

Query  68   HIVSFRLFKCYNTLWRYAGEEEIISIFVATLAYLIPIYIINKLLGFDYPIM-FYVLNTIF  126
            HI ++ +F+ Y+  W YA+  E++S++ A  + ++   ++  LL  + P++ +Y +  + 
Sbjct  56   HIFAY-VFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMM  114

Query  127  IIMFTSGARIAYRAIRIVMNKTYSRGKVSN--ILIIGAGDAGEMVIQELKRNSELkkvav  184
             +++ +G+R+  R  R    + +    V +   L++GAG++G ++I+E+ R+ +++  +V
Sbjct  115  HLLLIGGSRLFWRVYR----RYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPV  170

Query  185  aiidddkdkiG-RIIHNVKIVGTTSDIKAVVEKYNVDEIIFSIANiekrrkkeiiDICKN  243
              +DDDK+K    I + VK+ G   DI  +V K+ +  II++I+ + ++R +EI  IC+ 
Sbjct  171  LAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNI  230

Query  244  TNCKIKTIPGIYEIIDGKVDIKQIREVEIEDLLGREPIKTNLREISNYIEGKVILitggg  303
                +  +P I +++ G +++++++ VE+EDLLGR+P+  ++  IS  +  K IL+TG+G
Sbjct  231  EGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAG  290

Query  304  gsigsELCRQIAGFNPKELIIVDNYENNAYSIQQELLRKYKNKLDLKTVIASIREEKRMD  363
            GSIGSE+CRQ++ F+P+ +I++++ EN+ YSI+QEL + Y N++++  VIA +++  R+ 
Sbjct  291  GSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRIL  350

Query  364  EIFNKYKPEVVFHAAAHKHVPLMESSPGEAIKNNIFGTLNIAGLSSKYRAKKFVLISTDK  423
            E+ N +KP  V+HAAAHKHVPLME +P EAI+NNI+GT N+A  +      KFV+ISTDK
Sbjct  351  EVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDK  410

Query  424  AVNPTNIMGATKRAAEMIIQTMNAE-SQTEFVAVRFGNVLGSNGSVIPLFKKQIEDGGPV  482
            AVNP+N+MGATKR AEM+IQ++N + S+T FVAVRFGNVLGS GSVIPLFK+QIE GGPV
Sbjct  411  AVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPV  470

Query  483  TVTHPDIIRYFMTIPEAVGLVIQAGAMAKGGEIFVLDMGEPVRILDLAKNLIKFSGFEPD  542
            TVTHP++ RYFMTIPEA  LV+QAGA+A+GGE+FVLDMG PV+I+DLAKNLI++SG   +
Sbjct  471  TVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKE  529

Query  543  VDIKIEFSGLRPGEKLYEELLMSEEGLLDTEHKKIFIGRPIDVDREKITKYLK  595
             DI IEFSG+RPGEKLYEELL  +E   +    KI+        R K+  Y+K
Sbjct  530  EDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIY--------RGKVDHYIK  574

282) BamMC406_0776 in NC_010551


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  321 bits (1204),  Expect = 6e-89, Method: Compositional matrix adjust.
 Identities = 224/539 (42%), Positives = 371/539 (69%), Gaps = 12/539 (2%)

Query  62   VFGLYRGLWVFASLPDLMRISKAVAGGSVIVMIGAVMFQPTPIIPRsvllvsplmlfllm  121
            VF LY+  W +AS+++LM + KAV+++ V+ ++   ++ + + + R  ++   + L+L+ 
Sbjct  61   VFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLI-  119

Query  122  GGARALYRATKEFYLYGGLVGQGKPVLVLGAGTAGASLARELSRSGEWRLVGLL--DDDV  179
            GG+R + R  + +++  ++  + K+ LV+GAG +G+ L RE+ RS + R+  +L  DDD 
Sbjct  120  GGSRLFWRVYRRYFIDNAV--EKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDK  177

Query  180  TKHGREIYG-YKVLGSFNDLKHWTDAIKVEYAIIAIPSASVETQRRVATLCVRAGIKAMV  238
             K+   I    KV G  +D+ +    +++   IIAIP+ S      +  +C   G+    
Sbjct  178  NKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFK  237

Query  239  LPSLTALMPGQGFLSQVRNIDLEDLLGRDAVTIDTPHVEALLRGRVVMVTGAGGSIGSEL  298
            +P++  +++G+  +++++++++EDLLGRD+V +D + +   L  + ++VTGAGGSIGSE+
Sbjct  238  MPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEI  297

Query  299  CRQILRFAPAQIVAFDLSEYAMYRLTEELRERFPDQ-PVVPIIGDAKDSLLLDQVMSRHA  357
            CRQ+ +F P +I+ ++ +E ++Y + +EL   + ++   VP+I+D ++   + +VM+   
Sbjct  298  CRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFK  357

Query  358  PHIVFHAAAYKHVPLMEEHNAWQALRNNVLGTYRVARAAIRHDVRHFVLISTDKAVNPTN  417
            P  V+HAAA KHVPLME  N+ +A+RNN+LGT  VA +A   +V  FV+ISTDKAVNP+N
Sbjct  358  PYAVYHAAAHKHVPLME-YNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSN  416

Query  418  VMGASKRLAEMACQALQQTSGGTQFETVRFGNVLGSAGSVIPKFQQQIAKGGPVTVTHPE  477
            VMGA+KR+AEM  Q+L++ ++ T F +VRFGNVLGS GSVIP F++QI  GGPVTVTHPE
Sbjct  417  VMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPE  476

Query  478  ITRFFMTIPEASQLVLQASSMGHGGEIFILDMGEPVRIVDLARDLIRLYGFSEGQIRIEF  537
            +TR+FMTIPEAS+LVLQA+++++GGE+F+LDMG PV+IVDLA++LIRL G  E +I IEF
Sbjct  477  MTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEF  536

Query  538  TGLRPGEKLYEELLADDETTTRTPHPKL---RIAR-AREVPDHLLDELLPWLMQNRVLS  592
            +G+RPGEKLYEELL  +E   +    K+   ++ +  +   D ++++L+  + ++++L 
Sbjct  537  SGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLK  595

283) Desal_3620 in NC_012881


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  320 bits (1200),  Expect = 1e-88, Method: Compositional matrix adjust.
 Identities = 219/506 (44%), Positives = 354/506 (70%), Gaps = 21/506 (4%)

Query  64   GLYRGMWRYTSLRDLWHILEATFLQSLILVTVVLYKFGFDGFSRGVFIIDWMLTVFMCGG  123
             LY+  W Y+S+ +L  +L A     ++ + +V   ++   F R +++I WM+ +++ GG
Sbjct  63   NLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLR-LYFITWMMHLLLIGG  121

Query  124  VRV---MIRSFYAFKDGNSIQFSPENCPVDGNNALIIGAGRAGEKVVREIRSSGQLKYLP  180
             R+   + R ++             + +V+ + +L++GAG++G  ++RE+  S +++  P
Sbjct  122  SRLFWRVYRRYFI------------DNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQP  169

Query  181  VGFLDNDKTKRGRTIHG-VPVLGPLSDLQELVKNKCVNEILIAVAEASGAQMREIIDACK  239
            V  +D+DK K+  TI   V V G + D+ ELVK+  ++ I+IA++  S  ++ EI   C+
Sbjct  170  VLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICN  229

Query  240  QTGLPYKILPGMDEIINGKVGIKALRDVSYQDLLGRAPVQLDTTAISDYLSGKTVLVTGC  299
              G+    +P ++++++G + ++ L+ V  +DLLGR PV+LD + IS  L+ KT+LVTG 
Sbjct  230  IEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGA  289

Query  300  GGSIGSELVRQVVRFNPAKLILVDSSEANLYGIQMELHHELKFH-NYVTVLGSVQDEQLM  358
            GGSIGSE+ RQV +F+P K+IL++ +E ++Y+I+ EL      + ++V V++ VQ+   +
Sbjct  290  GGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRI  349

Query  359  DETFGNYKPHTVFHAAAYKHVPMMERNPWQAVHNNICGTKNVMTAADKHGVARFVIVSTD  418
             E   ++KP +V+HAAA KHVP+ME NP +A++NNI GTKNV  +A    V++FV++STD
Sbjct  350  LEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTD  409

Query  419  KAVRPTNIMGASKRVTELLMRLFHD--SKTTFMAVRFgnvvgssgsvvPLFRRQIEKGGP  476
            KAV P+N+MGA+KR++E++++ +++  SKT+F+AVRFGNV+GS GSV+PLF+ QIE GGP
Sbjct  410  KAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGP  469

Query  477  VTVTHKDVTRYFMSISEAAQLILQAGVMADGGEIFILEMGEPVKIADMARDLIRLSGKEP  536
            VTVTH ++TRYFM+I+EA++L+LQAG +A+GGE+F+L+MG PVKI D+A++LIRLSGK  
Sbjct  470  VTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKK-  528

Query  537  DKDIEIIFTGLREGEKLYEELITEGE  562
            + DI I F+G+R GEKLYEEL+   E
Sbjct  529  EEDIGIEFSGIRPGEKLYEELLNKNE  554

284) M301_1256 in NC_014207


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  319 bits (1198),  Expect = 2e-88, Method: Compositional matrix adjust.
 Identities = 205/445 (47%), Positives = 325/445 (74%), Gaps = 12/445 (2%)

Query  131  WKEHSLYGVAKSLGK-PTIILGAGDAAVALLKDLSRSTQWRVVGML--DDDKALLGREIF  187
            W+    Y + +++ K +T+++GAG+++  L++++ RS + R+  +L  DDDK      I 
Sbjct  126  WRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTIT  185

Query  188  G-VKVLGSIATLADMQRRLGVEHVIVAMPSAHHQKRRSAIDLANNLGLEVLTVPAIDDLM  246
              VKV G +  ++++ +++ +  +I+A+P+  +++      + N  G+E++ +P I+D++
Sbjct  186  ERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVL  245

Query  247  SGKVSVSQIRKVDVEDLLGRDAVLLDNSGLRHLIAEHAVMVSGAGGSIGSELCRQILNFS  306
            SG + V++++KV+VEDLLGRD+V LD + + + +++ +++V+GAGGSIGSE+CRQ+ +F 
Sbjct  246  SGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFD  305

Query  307  PSALICFDISEFSLYQLEQELSALNLTTKLLFMT--GDVKNKQRVKSLLEQFQPAVVFHA  364
            P  +I ++ +E S+Y ++QELS      ++ F+   +DV+NK R+  ++++F+P  V+HA
Sbjct  306  PQKIILLGHGENSIYSIHQELSK-TYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHA  364

Query  365  AAYKHVPMMENGNVWEALSNNVIGTHTIANACKEAGVEKFVLISTDKAVNPTNVMGASKR  424
            AA KHVP+ME  N  EA+ NN++GT  +A++ KE+ V KFV+ISTDKAVNP+NVMGA+KR
Sbjct  365  AAHKHVPLMEY-NPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKR  423

Query  425  LAEMVCQGLQEKLAREAMGTRFVIVRFGNVLGSSGSVIPKFREQIAKGGPVTITHPEITR  484
            +AEMV Q+L+E  ++    T FV VRFGNVLGS GSVIP F++QI  GGPVT+THPE+TR
Sbjct  424  IAEMVIQSLNEDNSK----TSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTR  479

Query  485  YFMSIPEAAQLVLQAGLMGKGGEILVLDMGEPVKIAALAADMIRLSGLQADEVKIEYVGL  544
            YFM+IPEA++LVLQAG +++GGE++VLDMG PVKI  LA ++IRLSG + +++ IE+ G+
Sbjct  480  YFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGI  539

Query  545  RPGEKLYEELLADDEHTMPTPHEKL  569
            RPGEKLYEELL  +E       EK+
Sbjct  540  RPGEKLYEELLNKNEIHPQQVYEKI  564

285) wbgZ in NC_009348


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  319 bits (1196),  Expect = 3e-88, Method: Compositional matrix adjust.
 Identities = 197/454 (44%), Positives = 320/454 (71%), Gaps = 17/454 (3%)

Query  98   VILVGGVRLF---FRALLNTTRLARTQVLIYGAGSSGRQLQMALLQGNEF--YPVAFVDD  152
            ++L+GG RLF   +R  +    + +   L+ GAG +G  L   +L++++    PV  VDD
Sbjct  116  LLLIGGSRLFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDD  175

Query  153  DSTKQGCVIQGCTVYHS--AQLPTLIDHYGVQKILLAMPSSTRARRQEVINALEPLTCEV  210
            D  KQ   I      ++   ++P L+  + ++KI++A+P+ ++ R +E+ +  +    E+
Sbjct  176  DKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVEL  235

Query  211  LSIPGMADLVNGTARIDQLNEVSIDDLLGRDPVEPVTKLMEANITGKAVMITGAGGSIGS  270
            + +P + D+++G   +++L+ V ++DLLGRDPVE    L+  ++T K++++TGAGGSIGS
Sbjct  236  FKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGS  295

Query  271  ELCRQILRCRPSALVLFELSEYALYVLHKNLREQCQREGIETDLVPLLGSVQRQHRLKTV  330
            E+CRQ+ +  P  ++L+  +E ++Y +H++L       G   ++VP+++ VQ + R+  V
Sbjct  296  EICRQVSKFDPQKIILLGHGENSIYSIHQELSKTY---GNRIEFVPVIADVQNKTRILEV  352

Query  331  MQSFRIQTVYHTAAYKHVPLVEFNIIEGVRNNVFGTLYAAQAAIEAGVETFVLISTDKAV  390
            M+ F+  +VYH+AA KHVPL+E+N  E++RNN++GT   A++A E+ V  FV+ISTDKAV
Sbjct  353  MNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAV  412

Query  391  RPTNTMGASKRLAELILQALTREKHNTRFCMVRFGNVLGSSGSVVPLFRQQIDKGGPITL  450
             P+N MGA+KR+AE+++Q+L  ++ +T F  VRFGNVLGS GSV+PLF++QI+ GGP+T+
Sbjct  413  NPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTV  472

Query  451  THPDIIRYFMTIPEAAQLVIQAGAMGEGGDVFVLDMGQPVRIIDLAKRMIRLSGLTLRDE  510
            THP++ RYFMTIPEA++LV+QAGA+++GG+VFVLDMG+PV+I+DLAK +IRLSG      
Sbjct  473  THPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG------  526

Query  511  LRPDGDIAIEVTGLRPGEKLYEELLIGDDARGTD  544
             + + DI+IE +G+RPGEKLYEELL  ++ +  +
Sbjct  527  -KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQ  559

286) BC1002_0639 in NC_014117


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  319 bits (1195),  Expect = 3e-88, Method: Compositional matrix adjust.
 Identities = 225/537 (42%), Positives = 370/537 (69%), Gaps = 13/537 (2%)

Query  63   YGLYRGMWVFASLPDLVRiakaigvgalvvvigsallQPAPVVPRSVLIVSPMLLFLTMG  122
            + LY+  W +AS+++L+ + KA+  + +V ++  +LL + +   R + +++ M+ +L +G
Sbjct  62   FNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLR-LYFITWMMHLLLIG  120

Query  123  GSRALYRAAKEFYRYGGLVGQGKPVLVLGAGNAGANLVRELKRSGQWRLVGLL--DDDPI  180
            GSR + R  + ++   ++  + K+ LV+GAG++G+ L+RE+ RS + R+  +L  DDD  
Sbjct  121  GSRLFWRVYRRYFIDNAV--EKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKN  178

Query  181  KQGREIYG-YRVVGAISDLQKICAELKVEHVIIAVPSASVEAHRRIATLCVRAGVRAMTL  239
            KQ   I    +V G + D+  +   +++  +IIA+P+ S      I  +C   GV    +
Sbjct  179  KQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKM  238

Query  240  PALTPLTQGQAFLSRVRQIDLEDLLGRDPVTIDTEHVAALLKNRVVMVTGAGGSIGSELC  299
            P +  +  G+  ++ ++++++EDLLGRDPV +D   ++  L N+ ++VTGAGGSIGSE+C
Sbjct  239  PNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEIC  298

Query  300  RQILRFGPVQLVAFDISEFSIYRLNEELRDKYPE-VSVVPLVGDVKDSLLLDQVMARYCP  358
            RQ+ +F+P +++ ++ +E SIY +++EL   Y + +  VP+++DV++   + +VM  + P
Sbjct  299  RQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKP  358

Query  359  HIVFHAAAYKHVPLMEEVNTWQAVRNNVLGTYRVARAAIRHDVAHFVLISTDKAVNPTNV  418
              V+HAAA KHVPLME  N  +A+RNN+LGT  VA +A   +V+ FV+ISTDKAVNP+NV
Sbjct  359  YAVYHAAAHKHVPLME-YNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNV  417

Query  419  MGASKRLAEMACSALQQQGARRTQFETVRFGNVLGSAGSVIPKFQEQIARGGPVTVTHPE  478
            MGA+KR+AEM   +L+++ ++ T F +VRFGNVLGS GSVIP F++QI  GGPVTVTHPE
Sbjct  418  MGATKRIAEMVIQSLNEDNSK-TSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPE  476

Query  479  ITRFFMTIPEASQLVLQASSMGRGGEIFILDMGKPVRIADLAHDLIRLYGFTEEQIRVVF  538
            +TR+FMTIPEAS+LVLQA+++++GGE+F+LDMGKPV+I DLA +LIRL G  EE+I + F
Sbjct  477  MTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEF  536

Query  539  TGLRPGEKLYEELLADDETTTRTPHPKL---RIAQ-AREVPDSLIDNLLPWLMQHRV  591
            +G+RPGEKLYEELL  +E   +    K+   ++ +  +   D ++++L+  + ++++
Sbjct  537  SGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKL  593

287) wbiI in NC_014722


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  318 bits (1194),  Expect = 4e-88, Method: Compositional matrix adjust.
 Identities = 217/498 (44%), Positives = 346/498 (70%), Gaps = 8/498 (1%)

Query  62   LLGLYRGMWVFASLPDLMRIAKAICFGAVLVMVASVMIQPVPIIPRSVLAVSPMLLFLGM  121
            ++ LY+  W +AS+++LM + KA+  + V+ ++   ++ + + + R  +    M L+L +
Sbjct  61   VFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLL-I  119

Query  122  GGARAIYRAAKEFYLYGGLVGQGKPVFVLGAGNAAASIVRELKRSGEWRLVGLL--DDDP  179
            GG+R + R  + +++  ++  + K+ +V+GAG++++ ++RE+ RS + R+  +L  DDD 
Sbjct  120  GGSRLFWRVYRRYFIDNAV--EKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDK  177

Query  180  VKHGRELYG-YPVLGPISELKRFAAELKVGHVIIAIPSASVDAHRRIATACVRAGIQAFV  238
             K+   +     V G + ++  +   +++  +IIAIP+ S      I   C   G++ F 
Sbjct  178  NKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFK  237

Query  239  LPRLTALTQGQSPLSRVRQIDLEDLLGRDPVSIDTAHVEALLKGQVVMVTGAGGSIGSEL  298
            +P +  +  G+  ++ ++++++EDLLGRDPV +D A +   L  + ++VTGAGGSIGSE+
Sbjct  238  MPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEI  297

Query  299  CRQILRFGPVQLIAFDLSEYAIYRLSEELHDHYPD-VSIKPVIGDAKDSLLLDQVMARYA  357
            CRQ+ +F+P ++I ++ +E +IY + +EL   Y + + + PVI+D ++   + +VM  + 
Sbjct  298  CRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFK  357

Query  358  PHIVFHAAAYKHVPLMEQLNAWQAIRNNVLGTYRVASAAIRHKVCRFVLISTDKAVNPTN  417
            P  V+HAAA KHVPLME  N+ +AIRNN+LGT  VA +A    V +FV+ISTDKAVNP+N
Sbjct  358  PYAVYHAAAHKHVPLME-YNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSN  416

Query  418  VMGASKRMAEMVCQVLQQSTHVTKLETVRFGNVLGSAGSVIPKFQEQIARGGPVTVTHPG  477
            VMGA+KR+AEMV Q L++    T + +VRFGNVLGS GSVIP F++QI  GGPVTVTHP 
Sbjct  417  VMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPE  476

Query  478  ITRFFMTIPEASQLVLQASSMGQGGEIFLLDMGQPVRIADLARDLIRLYGFNEDQIKIVF  537
            +TR+FMTIPEAS+LVLQA++++QGGE+F+LDMG+PV+I DLA++LIRL G +E++I I F
Sbjct  477  MTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEF  536

Query  538  TGLRPGEKLYEELLADEE  555
            +G+RPGEKLYEELL  +E
Sbjct  537  SGIRPGEKLYEELLNKNE  554

288) Pcar_1536 in NC_007498


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  318 bits (1192),  Expect = 6e-88, Method: Compositional matrix adjust.
 Identities = 211/510 (42%), Positives = 345/510 (68%), Gaps = 25/510 (4%)

Query  81   WRYVSIPDLLQILKANVVASFGVVLYAVFIREMNNLPRSVIILDFL-VCFMTMIGVRVLV  139
            W Y S+++L+ +LKA   +          +  +  ++  +    FL + F+T    +++ 
Sbjct  69   WEYASVSELMSVLKAVTSSI---------VVTLLLVSLLISESPFLRLYFIT----WMMH  115

Query  140  RILREQRRQLTKSYRR-------KKKSVLVVGSGIVAQTIVREM-RENPKMLKAVLGFID  191
             +L    R + + YRR        KK+ LVVG+G  +  ++REM R +   +++VL+  D
Sbjct  116  LLLIGGSRLFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDD  175

Query  192  RDQGRKGKVFNGIPVLGTLDDMAKICGKNDIDLIIVAESSVQPKELRNIVAFCKENKIES  251
              + +K  + + + V G ++D++ +  K  I  II+A +++  K L +I  +C+ + +E 
Sbjct  176  DKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVEL  235

Query  252  KILPAMGDIISGQVSLQHCREVRLEDLLGRPPIRLDVEEINNYLHGKRVLVTGAAGSIGS  311
              +P + D++SG++ +++ + V +EDLLGR P+ LD+  I+  L  K +LVTGA+GSIGS
Sbjct  236  FKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGS  295

Query  312  EICRQVAQFGPGNLVMFENAETPLFHLENELREKFPG-LSLIPSLSDIRDQTRVSQVFKK  370
            EICRQV++F+P +++++ ++E +++ +++EL   +   + ++P ++D++++TR+ +V + 
Sbjct  296  EICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNE  355

Query  371  HRPQVVFHAAAYKHVPMSEINPVQVVKNNVLGTRNIIDASFDIGAEHFVLISTDKAVNPT  430
             +P  V+HAAA KHVP+ E NP + ++NN+LGT+N+ +++ +     FV+ISTDKAVNP+
Sbjct  356  FKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPS  415

Query  431  NIMGTTKRVAEMYAQSLPRNGSTKA-TTVRFGNVLGSHGSVIPIFREQILKGGPVTVTHP  489
            N+MG+TKR+AEM  QSL  + S  +  +VRFGNVLGS+GSVIP+F++QI  GGPVTVTHP
Sbjct  416  NVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHP  475

Query  490  EITRFFMTIPEAVQLVLQAGCMGYGGEIFLLDMGEPVKIIRLAEEMIRLSGRRPYEDIEI  549
            E+TR+FMTIPEA +LVLQAG ++ GGE+F+LDMG PVKI+ LA ++IRLSG++  EDI I
Sbjct  476  EMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKE-EDIGI  534

Query  550  TFTGLRAGEKLFEELLIDGEGIKPTVHEKI  579
             F+G+R+GEKL+EELL   E     V EKI
Sbjct  535  EFSGIRPGEKLYEELLNKNEIHPQQVYEKI  564

289) K734_02850 in NC_021286


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  318 bits (1191),  Expect = 7e-88, Method: Compositional matrix adjust.
 Identities = 218/499 (44%), Positives = 356/499 (72%), Gaps = 30/499 (6%)

Query  111  LVAFLLTGGSRLIVREGYQR---AMSRQKDRVMIYGAGSAGRQLAQALANGDEF--HPVM  165
            ++ +LL GGSRL+ +  Y+R     + +K   ++ GAG +G  L + +  +++   +PV+
Sbjct  113  MMHLLLIGGSRLF-WRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVL  171

Query  166  FIDDDSGLQNTSVLG-LKVTG-PEGIACAVRELDVQRILLALPSTLRSRRRQILDSLEQL  223
             +DDD   Q+ ++   +KV G  E+I+  V+ + +++I++A+P TL  +R   L+ ++++
Sbjct  172  AVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIP-TLSQKR---LNEINKI  227

Query  224  ----PVKVQTVPGMSDMVNGDMSIDQLQDVRVEDLLGRDPVTPAPQLMEKHITGQTVLVT  279
                 V +  +P + D+++G++ +++L+ V VEDLLGRDPV     L+ +++T +T+LVT
Sbjct  228  CNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVT  287

Query  280  GAGGSIGSELCRQILQQRPKVLVLYELSEFALYAIERELTQICQHQGIGAEIIPVIGTVQ  339
            GAGGSIGSE+CRQ+ +  P+ ++L   +E ++Y+I++EL++   ++    E++PVI+ VQ
Sbjct  288  GAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNR---IEFVPVIADVQ  344

Query  340  RRNRIETVLKTFAVDTVYHAAAYKHVPLVEYNMVEGVRNNVFGTWHTAEAAISAGVKQFV  399
             + RI  V++ F   +VYHAAA KHVPL+EYN  E++RNN++GT + AE+A  + V +FV
Sbjct  345  NKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFV  404

Query  400  LISTDKAVRPTNVMGTTKRLSELVLQGLAQRQRGTRFSMVRFGNVLGSSGSVVPLFKEQI  459
            +ISTDKAV P+NVMG+TKR++E+V+Q+L + +  T F  VRFGNVLGS GSV+PLFK+QI
Sbjct  405  MISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQI  464

Query  460  EHGGPVTVTHPDITRFFMTIPEAAQLVIQAGTMGHSGSVFVLDMGDSVKIVDLARKMIRL  519
            E GGPVTVTHP++TR+FMTIPEA++LV+QAG+++++G VFVLDMG +VKIVDLA+++IRL
Sbjct  465  ESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRL  524

Query  520  SGLEEKTEKNPHGDIAIEFSGLRPGEKLYEELLIGDNVEASD-HPRILRANEQSLSWDEM  578
            SG       + + DI+IEFSG+RPGEKLYEELL  +++++ +   +I R++ +     E+
Sbjct  525  SG-------KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEV  577

Query  579  EKLLGLLDDACQRFAIDEL  597
            +    +++D  + F+ + L
Sbjct  578  DL---IVEDLINNFSKEKL  593

290) IL0569 in NC_006512


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  318 bits (1191),  Expect = 7e-88, Method: Compositional matrix adjust.
 Identities = 218/499 (44%), Positives = 356/499 (72%), Gaps = 30/499 (6%)

Query  111  LVAFLLTGGSRLIVREGYQR---AMSRQKDRVMIYGAGSAGRQLAQALANGDEF--HPVM  165
            ++ +LL GGSRL+ +  Y+R     + +K   ++ GAG +G  L + +  +++   +PV+
Sbjct  113  MMHLLLIGGSRLF-WRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVL  171

Query  166  FIDDDSGLQNTSVLG-LKVTG-PEGIACAVRELDVQRILLALPSTLRSRRRQILDSLEQL  223
             +DDD   Q+ ++   +KV G  E+I+  V+ + +++I++A+P TL  +R   L+ ++++
Sbjct  172  AVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIP-TLSQKR---LNEINKI  227

Query  224  ----PVKVQTVPGMSDMVNGDMSIDQLQDVRVEDLLGRDPVTPAPQLMEKHITGQTVLVT  279
                 V +  +P + D+++G++ +++L+ V VEDLLGRDPV     L+ +++T +T+LVT
Sbjct  228  CNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVT  287

Query  280  GAGGSIGSELCRQILQQRPKVLVLYELSEFALYAIERELTQICQHQGIGAEIIPVIGTVQ  339
            GAGGSIGSE+CRQ+ +  P+ ++L   +E ++Y+I++EL++   ++    E++PVI+ VQ
Sbjct  288  GAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNR---IEFVPVIADVQ  344

Query  340  RRNRIETVLKTFAVDTVYHAAAYKHVPLVEYNMVEGVRNNVFGTWHTAEAAISAGVKQFV  399
             + RI  V++ F   +VYHAAA KHVPL+EYN  E++RNN++GT + AE+A  + V +FV
Sbjct  345  NKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFV  404

Query  400  LISTDKAVRPTNVMGTTKRLSELVLQGLAQRQRGTRFSMVRFGNVLGSSGSVVPLFKEQI  459
            +ISTDKAV P+NVMG+TKR++E+V+Q+L + +  T F  VRFGNVLGS GSV+PLFK+QI
Sbjct  405  MISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQI  464

Query  460  EHGGPVTVTHPDITRFFMTIPEAAQLVIQAGTMGHSGSVFVLDMGDSVKIVDLARKMIRL  519
            E GGPVTVTHP++TR+FMTIPEA++LV+QAG+++++G VFVLDMG +VKIVDLA+++IRL
Sbjct  465  ESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRL  524

Query  520  SGLEEKTEKNPHGDIAIEFSGLRPGEKLYEELLIGDNVEASD-HPRILRANEQSLSWDEM  578
            SG       + + DI+IEFSG+RPGEKLYEELL  +++++ +   +I R++ +     E+
Sbjct  525  SG-------KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEV  577

Query  579  EKLLGLLDDACQRFAIDEL  597
            +    +++D  + F+ + L
Sbjct  578  DL---IVEDLINNFSKEKL  593

291) capD in NC_016002


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  317 bits (1188),  Expect = 1e-87, Method: Compositional matrix adjust.
 Identities = 214/476 (45%), Positives = 339/476 (72%), Gaps = 16/476 (3%)

Query  105  GPFPRSSIVIFWVFAMAYIGGSRFLLRGLVRRIDAVDSPREHVIIYGAGRAGIQLMLALQ  164
            +PF R  ++  W+  +  IGGSR++ R   R +      +   ++ GAG++G  L+  + 
Sbjct  102  SPFLRLYFIT-WMMHLLLIGGSRLFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREML  160

Query  165  AGREYR--PMAFVDDNPALWRHTFRG-LAVHA-PAELPALLTDTEAKAILLALPSVSRAR  220
             +++ R  P+  VDD+    + T+   + V++   ++P L+     K I++A+P++S+ R
Sbjct  161  RSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKR  220

Query  221  QREILEKLESLH-VPIKRLPGMAELVSGEVRVEELKRVDIEDLLGRDPVPPRPELLARNI  279
              EI +K+ +++ V + ++P + +++SGE+ V++LK+V++EDLLGRDPV     L++R++
Sbjct  221  LNEI-NKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISREL  279

Query  280  EGRVVMVTGAGGSIGSELCRQIVRQRPARLILFELSEFALYAIDQEL-KALAPQLECLPL  338
              + ++VTGAGGSIGSE+CRQ+ +  P ++IL+  +E ++Y+I+QEL K+ + ++E +P+
Sbjct  280  TNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPV  339

Query  339  LGSVTDYERLFRVIDGFGVQTVFHAAAYKHVPLVEHNPLAGIRNNAFGTDVCAQAAEDGG  398
            ++ V +  R++ V++ F   +V+HAAA KHVPL+E NP  +IRNN +GT   A++A +G 
Sbjct  340  IADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGE  399

Query  399  VDTFVLISTDKAVRPTNVMGATKRLAELCLQTRHARGSRTRFVMVRFGNVLGSSGSVVPL  458
            V  FV+ISTDKAV P+NVMGATKR+AE+ +Q+ +   S+T FV VRFGNVLGS GSV+PL
Sbjct  400  VSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPL  459

Query  459  FKKQIAAGGPVTVTHPEITRYFMTIPEAAQLVIQAGAMGEGGDVFVLDMGEPVKIAELAR  518
            FK+QI +GGPVTVTHPE+TRYFMTIPEA++LV+QAGA+++GG+VFVLDMG PVKI +LA+
Sbjct  460  FKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAK  519

Query  519  RMVHLSGLTVKDESRPDGDIEIRFSGLRPGEKLYEELLIGDNVLPTD-HPRILRAQ  573
             +++LSG       + + DI I FSG+RPGEKLYEELL  +++ P +   +I R++
Sbjct  520  NLIRLSG-------KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGK  568

292) GEM_2637 in NC_018513


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  317 bits (1187),  Expect = 1e-87, Method: Compositional matrix adjust.
 Identities = 207/479 (44%), Positives = 332/479 (70%), Gaps = 11/479 (2%)

Query  122  GGARALYRATKEFYLYGGLVGQGKPVLVLGAGTAGASLARELSRSGEWRLVGLL--DDDV  179
            GG+R + R  + +++  ++  + K+ LV+GAG +G+ L RE+ RS + R+  +L  DDD 
Sbjct  120  GGSRLFWRVYRRYFIDNAV--EKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDK  177

Query  180  TKQGREIYG-YKVLGSFNDLKHWTDAMKVEYAIIAIPSATVETQRRVATLCVRAGIKAMV  238
             KQ   I    KV G  +D+ +     ++   IIAIP+ +      +  +C   G+    
Sbjct  178  NKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFK  237

Query  239  LPSLTALMPGQGFLSQVRNIDLEDLLGRDAVTIDTPHVEALLRGRVVMVTGAGGSIGSEL  298
            +P++  +++G+  +++++++++EDLLGRD+V +D + +   L  + ++VTGAGGSIGSE+
Sbjct  238  MPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEI  297

Query  299  CRQILRFAPAQLVAFDLSEYAMYRLAEELRERFPDQ-PVLPIIGDAKDSLLLDQVMSRYA  357
            CRQ+ +F P +++ ++ +E ++Y + +EL   + ++   +P+I+D ++   + +VM+ + 
Sbjct  298  CRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFK  357

Query  358  PHIVFHAAAYKHVPLMEEHNAWQALRNNVLGTYRVARAAIRHGVRHFVLISTDKAVNPTN  417
            P  V+HAAA KHVPLME  N+ +A+RNN+LGT  VA +A    V  FV+ISTDKAVNP+N
Sbjct  358  PYAVYHAAAHKHVPLME-YNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSN  416

Query  418  VMGASKRLAEMACQALQQTSGGTQFETVRFGNVLGSAGSVIPKFQQQIAKGGPVTVTHPE  477
            VMGA+KR+AEM  Q+L++ ++ T F +VRFGNVLGS GSVIP F++QI  GGPVTVTHPE
Sbjct  417  VMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPE  476

Query  478  ITRFFMTIPEASQLVLQASSMGHGGEIFILDMGEPVKIVDLARDLIRLYGFSEGQIRIEF  537
            +TR+FMTIPEAS+LVLQA+++++GGE+F+LDMG PVKIVDLA++LIRL G  E +I IEF
Sbjct  477  MTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEF  536

Query  538  TGLRPGEKLYEELLADDETTTRTPHPKL---RIAR-AREVPDHLLDELLPWLMQNRVLS  592
            +G+RPGEKLYEELL  +E   +    K+   ++ +  +   D ++++L+  + ++++L 
Sbjct  537  SGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLK  595

293) Rcas_1360 in NC_009767


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  317 bits (1189),  Expect = 1e-87, Method: Compositional matrix adjust.
 Identities = 239/566 (43%), Positives = 382/566 (68%), Gaps = 17/566 (3%)

Query  11   LIFDVLLVPLAIYVSFVLRLETFDLKTYWVACAHFCLMAVIVTPLIFR-AFGVYRRYWRY  69
            +I+D ++V +++++++ + LE + +K Y +    +  + ++V+  IF   F +Y+R W Y
Sbjct  14   IIIDSFIVTFSVFLGYAI-LEPY-FKGYSIDLLVLSSVILLVSHHIFAYVFNLYHRAWEY  71

Query  70   ASFEEVLLLCSATSLAMGATAILLTLLDIVTPVIATVPRSIPFIVPPIAASLVSIPRLLV  129
            AS  E++ +  A + ++  T +L++LL   +P +      + FI   +   L++ +RL+ 
Sbjct  72   ASVSELMSVLKAVTSSIVVTLLLVSLLISESPFL-----RLYFITWMMHLLLIGGSRLF-  125

Query  130  rigaarerrrratdrpaPVLIMGAGDAASIIVREIQRNPRLGMEVVGLLDDDPTKRGLRL  189
                 R      +    + L++GAG+++S+++RE+ R+  + M+ V  +DDD  K+ + +
Sbjct  126  -WRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTI  184

Query  190  HG-VEVLGDRHAIPSLVAQHKVRQVIIAMPGAPGKAVRDIMHICESVGVAVRIVPGMHEL  248
               V V G  + IP LV + +++++IIA+P  + K + +I  IC+  GV +  +P ++++
Sbjct  185  TERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDV  244

Query  249  IDGTISVSKLRTIQIEDLLRRAPVQTDtaavrglvagrrvlvtggggSIGSELCRQLLRF  308
            + G + V++L+ +++EDLL R PV+ D A +   ++ + +LVTG+GGSIGSE+CRQ+ +F
Sbjct  245  LSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKF  304

Query  309  GPSHLIVLGHGENSVFEICNELDCLAEAHLDQSPCIVPVIADIRDLERLRSVFAIHAPEL  368
            +P  +I+LGHGENS++ I +EL      +++    +VPVIAD+++  R+  V     P  
Sbjct  305  DPQKIILLGHGENSIYSIHQELSKTYGNRIE----FVPVIADVQNKTRILEVMNEFKPYA  360

Query  369  VFHAAAHKHVPLMEAHPVEAISNNVVGTRNLLDVALETGVERFVMISSDKAVNPTSVMGA  428
            V+HAAAHKHVPLME +P EAI NN++GT+N+ + A E  V +FVMIS+DKAVNP++VMGA
Sbjct  361  VYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGA  420

Query  429  TKRIAEMLVLDAARRSGR-PFVAVRFGNVLGSRGSVVLTFKRQIAAGGPVTVTHPEMRRY  487
            TKRIAEM++      +++ +FVAVRFGNVLGSRGSV+  FK QI +GGPVTVTHPEM RY
Sbjct  421  TKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRY  480

Query  488  FMTIPEAVQLVLQASVLGRTGEIFMLDMGEPVKVVDLARDMIRLSGLEVGRDIDICFTGM  547
            FMTIPEA +LVLQA+ L++ GE+F+LDMG PVK+VDLA+++IRLSG     DI+I F+G+
Sbjct  481  FMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIGIEFSGI  539

Query  548  RPGEKLFEELFARGEEYQPTAHSKIF  573
            RPGEKL+EEL+ + E        KI+
Sbjct  540  RPGEKLYEELLNKNEIHPQQVYEKIY  565

294) SCD_n02873 in NC_022357


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  317 bits (1187),  Expect = 1e-87, Method: Compositional matrix adjust.
 Identities = 230/543 (43%), Positives = 378/543 (70%), Gaps = 18/543 (3%)

Query  22   AWVLAYWLRFNFAISEPYMQS------MWNTLVWVVPLQTFIFWRFGLYRGVWRFASLPD  75
            + ++++ + + +AI EPY ++      + ++++ +V+ + F +  F LY+  W +AS+++
Sbjct  18   SFIVTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAY-VFNLYHRAWEYASVSE  76

Query  76   LKRIIMAVGVAGLSvpvvlymvhvpvavpRSvlvldplllvmvvGGSRFVYRSWKEHHLY  135
            L  ++ AV  + +   +++ ++    +  R  ++   + L+++ G+  F    W+  + Y
Sbjct  77   LMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRLF----WRVYRRY  132

Query  136  RFADA-ERQPVLVLGAGEIAAGLVKELSRSKEWRVEGLLDDDPAMVGR---LIQGVKVLG  191
             + +A E+++ LV+GAG+ ++ L++E+ RS++ R++ +L  D     +   + + VKV G
Sbjct  133  FIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQG  192

Query  192  RVDELPKWAGRYDVHVAIIAMPSASHQARRRAVKLCSSANVKSMTVPAFDDLASGRVTVS  251
             V+++P    ++ +   IIA+P+ S++      K+C+   V    +P ++D+ SG + V+
Sbjct  193  YVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVN  252

Query  252  QIRQVELDDLLGRDPVTLDEEGLHGLLTGQPVMVTGAGGSIGSELCRQIARFEPACLVLF  311
            ++++VE++DLLGRDPV LD   +   LT + ++VTGAGGSIGSE+CRQ+++F+P  ++L+
Sbjct  253  NLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILL  312

Query  312  ELNEFVLYRMEQEFAEKL-PQLRIVCAIGDVKDEARLDQVMCQYapaaifhaaaYKHVPL  370
               E  +Y ++QE++     ++ +V  I+DV++ +R+ +VM ++ P A++HAAA KHVPL
Sbjct  313  GHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPL  372

Query  371  MEQENAWQAVLNNVLGTCTVARAAMRHGVKKFVLISTDKAVNPTNVMGATKRLAEMVCQG  430
            ME  N+ +A+ NN+LGT  VA +A    V KFV+ISTDKAVNP+NVMGATKR+AEMV Q+
Sbjct  373  MEY-NPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQS  431

Query  431  LQQEGG-TRFVMVRFGNVLGSTGSVIPKFQEQIVHGGPITVTHPEITRYFMSIPEAAQLV  489
            L+++ + T FV VRFGNVLGS GSVIP F++QI  GGP+TVTHPE+TRYFM+IPEA++LV
Sbjct  432  LNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLV  491

Query  490  LQAGLMGEGGEIFVLDMGEPVRIVELAKDMIRLSGFSEGDIPIVFTGLRPGEKLYEELLA  549
            LQAG +++GGE+FVLDMG PV+IV+LAK++IRLSG  E DI I F+G+RPGEKLYEELL 
Sbjct  492  LQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLN  551

Query  550  DDE  552
             +E
Sbjct  552  KNE  554

295) EGYY_08980 in NC_015738


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  316 bits (1185),  Expect = 2e-87, Method: Compositional matrix adjust.
 Identities = 231/499 (47%), Positives = 347/499 (70%), Gaps = 12/499 (2%)

Query  60   LFRMYNNLWEYASIDEAIQILLAVVLSTLAGAVFLWIIDVRLP-IRVFIASAILLVFLMG  118
            +F +Y+  WEYAS+ E + +L AV  S +   +++ ++    P +R+++ + ++ ++L+G
Sbjct  61   VFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIG  120

Query  119  GVRMVWRIMRGKRHQIAAGAPTDRPRTLIVGAGETGSLTINRMASKDPNMPGIPVVATDD  178
            G R+ WR+ R    +   + + ++  TL+VGAG+ GS+ I  M  +  +M   PV+A DD
Sbjct  121  GSRLFWRVYR----RYFIDNAVEKKATLVVGAGQGGSVLIREML-RSQDMRMQPVLAVDD  175

Query  179  DPVKRGLRIHG-IKVAGSSDDIISLVDRYDIEQIVVAIPSATSEERKRIYAVCTQTNCSL  237
            D  K+ + I   +KV G  +DI  LV ++ I +I++AIP+ +    + I  +C      L
Sbjct  176  DKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVEL  235

Query  238  KTLPNIRDLCIDELGDVAFRDVDVVDLLGREEIVLDTRIASSYIAGETVLVTGGGGSIGS  297
              +PNI D+  +EL    ++ V+V DLLGR+ + LD  + S  ++  T+LVTG+GGSIGS
Sbjct  236  FKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGS  295

Query  298  ELCRQLAKVAPACIVIFDIYENDAYMLRQELISEYDD-IDVVIEVGSVCDTSRVKELFER  356
            E+CRQ++K  P  I++++  EN  Y ++QEL   Y++ I+ V  ++ V + +R+ E+ + 
Sbjct  296  EICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNE  355

Query  357  YRPaavfhaaahkhvPLMEQCPREAVQNNVFGTLNVVRAADAFGVERFIFISTDKAVNPT  416
            ++P AV+HAAAHKHVPLME  P+EA++NN++GT NV  +A    V +F+ ISTDKAVNP+
Sbjct  356  FKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPS  415

Query  417  SVMGATKRMGEMIVQ-YYARASKTVFSAVRFGNVLGSNGSVIPLFKKQIAAGGPITVTHP  475
            +VMGATKR++EM++Q      SKT F AVRFGNVLGS GSVIPLFK+QI +GGP+TVTHP
Sbjct  416  NVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHP  475

Query  476  DIERFFMTIPEATRLVIQAGGMAHGGEIFILDMGEPVKILDLAKNLIRLSG---ADVKIL  532
            ++ R+FMTIPEA+RLV+QAG++A+GGE+F+LDMG PVKI+DLAKNLIRLSG    D+ I 
Sbjct  476  EMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIE  535

Query  533  FTGLRDGEKMYEELLMDEE  551
            F+G+R GEK+YEELL  +E
Sbjct  536  FSGIRPGEKLYEELLNKNE  554

296) yveM in NC_014614


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  316 bits (1186),  Expect = 2e-87, Method: Compositional matrix adjust.
 Identities = 246/542 (46%), Positives = 371/542 (69%), Gaps = 31/542 (5%)

Query  66   YLFGLYRSLWRYASINEMMSIALAALWSNIATYITFLLLDVNMP--RSFYIINMFTMAAF  123
            Y+F LY+  W YAS++E+MS+  A   S + T +   LL  + P  R ++I  M  +  +
Sbjct  60   YVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLL-L  118

Query  124  VGGLRFSYRVLRRIEMGKLQTNKLNRPLSKVLIIGAGEAGVMTAKELLRTPDMNKVLVGF  183
            +GG R+  RV RR  +++   +K        L++GAG++G +  +E+LR+ DM    V  
Sbjct  119  IGGSRLFWRVYRRYFIDNAVEKK------ATLVVGAGQGGSVLIREMLRSQDMRMQPVLA  172

Query  184  VDDDSnkigkkingiPIVADISSGVKFLDDVDEIILAM---------PSITHKRRKEIIE  234
            VDDD NK          +++      +++D+ E++            P++++KR +EI  
Sbjct  173  VDDDKNKQKM------TITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINK  226

Query  235  IYKDSGVKMKILPGIYELIDGQVDIKKIRDVDIEDLLGRDSIALDNTKIAEDIKNKiviv  294
            I +  GV +  +P I +++ G++++++++ V++EDLLGRD++ LD + I+ ++ NK ++V
Sbjct  227  ICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILV  286

Query  295  tggggsigsELCRQIAGFSPKLLIIFDIYENSVYDIQNELKSKYPT-LPLKVLIGSVRDV  353
            TG+GGSIGSE+CRQ++ F P+ +I+++  ENS+Y I++EL   Y   + +  +I+ V++ 
Sbjct  287  TGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNK  346

Query  354  NRLDEIFLKYRPQLVFHAAAHKHVPLMEDSPFEAIKNNTVGTKNISEIAGKYEVQRFVLI  413
             R+ E+   ++P  V+HAAAHKHVPLME +P EAI+NN +GTKN++E A   EV +FV+I
Sbjct  347  TRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMI  406

Query  414  STDKAVNPTNIMGASKRLAELVIQDMNKKYS-TEYVAVRFGNVLGSNGSVIPLFKKQIEK  472
            STDKAVNP+N+MGA+KR+AE+VIQ +N   S T +VAVRFGNVLGS GSVIPLFK+QIE 
Sbjct  407  STDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIES  466

Query  473  GGPITVTHPDIIRYFMTIPEAVQLVLQAGSMAKGGEIFILDMGEPVKIVDLAEDLIRLSG  532
            GGP+TVTHP++ RYFMTIPEA +LVLQAG++A+GGE+F+LDMG PVKIVDLA +LIRLSG
Sbjct  467  GGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG  526

Query  533  FEPYEDINIEFTGLRPGeklfeelllaeegilDTKHEKIFVGKPFDKDDDFTRKSLEGII  592
                EDI IEF+G+RPGEKL+EELL  +E   +   EKI+ GK     D++ +  ++ I+
Sbjct  527  -KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKV----DHYIKTEVDLIV  581

Query  593  ES  594
            E 
Sbjct  582  ED  583

297) Nit79A3_0675 in NC_015731


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  316 bits (1184),  Expect = 3e-87, Method: Compositional matrix adjust.
 Identities = 217/456 (48%), Positives = 323/456 (71%), Gaps = 26/456 (5%)

Query  121  MGGSRLTYRAWKE-RRLYGLESNEAKLVLILGAGSTAVSLVKDLTRSRDWHVVGMLDDDP  179
            +GGSRL    W+  RR +  ++ E K  L++GAG  +  L++++ RS+D ++  +L  D 
Sbjct  119  IGGSRLF---WRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDD  175

Query  180  RKLGTRL---QGIRVLGTINELPQWVQKLNVGHVIIAIPSVSRRIHRQALEMCSEIGVKA  236
             K   ++   + ++V G ++++P+ V+K+ +  +IIAIP++S++   +   +C+  GV  
Sbjct  176  DKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVEL  235

Query  237  MTVPSYADLISGKTTVSQIREIELDDLLGRAPVVLDNDGLHGLLTGKVILVTGAGGSIGS  296
              +P+  D++SG   V++++ +E++DLLGR PV LD   +   LT K ILVTGAGGSIGS
Sbjct  236  FKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGS  295

Query  297  ELCRQLAAFKPNRIVFLELNEFALYSIQEEFLSRFPGMAMSF--VIGDIKDHARMTQLFT  354
            E+CRQ++ F P++I++L   E ++YSI++E+   + G  + F  VI+D+++ +R+ ++  
Sbjct  296  EICRQVSKFDPQKIILLGHGENSIYSIHQELSKTY-GNRIEFVPVIADVQNKTRILEVMN  354

Query  355  QFRPSVVFHAAAYKHVPLMEQENACQALLNNVLGTYVLAQVAISFGVKKFVLISTDKAVN  414
            +F+P  V+HAAA KHVPLME  N+ +A+ NN+LGT  +A+ A    V KFV+ISTDKAVN
Sbjct  355  EFKPYAVYHAAAHKHVPLMEY-NPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVN  413

Query  415  PVSVMGASKRLAEMVCQALQQSITKNAKPDQNNQSNQTCFVMVRFGNVLGSTGSVIPKFR  474
            P +VMGA+KR+AEMV Q+L            N+++++T FV VRFGNVLGS GSVIP F+
Sbjct  414  PSNVMGATKRIAEMVIQSL------------NEDNSKTSFVAVRFGNVLGSRGSVIPLFK  461

Query  475  EQIARGGPITITHPEMTRYFMSIPEAAQLVLQAGLMGGTKGGGEIFVLDMGDPVKIVDLA  534
            +QI  GGP+T+THPEMTRYFM+IPEA++LVLQAG ++    GGE+FVLDMG PVKIVDLA
Sbjct  462  NQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALA---QGGEVFVLDMGKPVKIVDLA  518

Query  535  NDLIHLSGLGEDDIRIVFSGLRPGEKLHEELLAASE  570
            ++LI+LSG  E+DI I FSG+RPGEKL EELL  +E
Sbjct  519  KNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNE  554

298) LRC_00890 in NC_015975


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  316 bits (1184),  Expect = 3e-87, Method: Compositional matrix adjust.
 Identities = 236/519 (46%), Positives = 357/519 (69%), Gaps = 39/519 (7%)

Query  68   VFRFL-RLYNSLWQFASFDELNRIISSSVITTVFQMLFMTCLIVRMP-VSYYIFGALIQF  125
            +F ++  LY+  W++AS  EL  ++ +   + V  +L+++ LI   P +  Y++  ++++
Sbjct  57   IFAYVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHL  116

Query  126  AMIVGIRFSYR-YINLERNRRYNTNAAIHN--VMVIGAGAAGKTILREMRNSQGMTGKAC  182
             +I G R+  R Y      RRY  + A+++   +V+GAG +G  ++REM  SQ+M  ++ 
Sbjct  117  LLIGGSRLFWRVY------RRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPV  170

Query  183  CVIDDNPNKWDRTM-EGVPVVGGRDAILSAVKKYSIDQIMFAIPSASTEDKRDILNICKE  241
              +DD+ NK   T+ E V V G  + I   VKK+ I +I++AIP+ S     +I +IC+ 
Sbjct  171  LAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNI  230

Query  242  TKCELKSLPGIYQLANGEVSLSKMKAVNVEDLLGRDPIKVDMAEVFRQLTGKTILVTGGG  301
               EL  +P I ++ +GE+ ++++K V+VEDLLGRDP+ +DMA + R+LT KTILVTG+G
Sbjct  231  EGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAG  290

Query  302  GSIGSELCRQIAAHNPKQLIIFDIYENNAYDIQQELVRKYGDKLNLVTLIGSVRDSRRLD  361
            GSIGSE+CRQ++  +P+++I+++  EN+ Y I+QEL + YG+++++V +I+ V++  R+ 
Sbjct  291  GSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRIL  350

Query  362  MIFDKYRPDIVYHAAAHKHVPLMEASPNEAIKNNVIGTYKTTYMALKYGVEKFVLISTDK  421
             + + ++P  VYHAAAHKHVPLME +P+EAI+NN++GT + +  A    V KFV+ISTDK
Sbjct  351  EVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDK  410

Query  422  AVNPTNIMGASKRLCEMVIQSMERISENDNFDSLPLLHDHKKDGLKEEKPKATKTKFVAV  481
            AVNP+N+MGA+KR+ EMVIQS                       L+E+++K++   FVAV
Sbjct  411  AVNPSNVMGATKRIAEMVIQS-----------------------LNEDNSKTS---FVAV  444

Query  482  RFGNVLGSNGSVIPLFKKQIAEGGPVTVTHPDIIRYFMTISEAVSLVLQAGTYAKGGEIF  541
            RFGNVLGS GSVIPLFK+QI  GGPVTVTHP++ RYFMTI+EA  LVLQAG+ A+GGE+F
Sbjct  445  RFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVF  504

Query  542  VLDMGSPVKIDTLARNLIKLSGHEPDVDIPIVYTGLRSG  580
            VLDMG PVKI  LA+NLI+LSG   + DI I ++G+R+G
Sbjct  505  VLDMGKPVKIVDLAKNLIRLSGKKEE-DIGIEFSGIRPG  542

299) CPE0463 in NC_003366


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  315 bits (1180),  Expect = 5e-87, Method: Compositional matrix adjust.
 Identities = 226/522 (44%), Positives = 352/522 (68%), Gaps = 13/522 (2%)

Query  61   IFKMYKSIWTIVGIDEVAFGLIACLIATGiilitstiissiyyidyitVLLAGLFIMIFT  120
            +F++Y   W   ++ E+  +++  + ++ ++ +    +           +++ +  +++ 
Sbjct  61   VFNLYHRAWEYASVSEL-MSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLI  119

Query  121  IGIRVSFRIYRRMISHGRVLLNSSNISNLEKILIIGAGSCGQLIIEE-IRKQNPIKQKVI  179
             G R+  R+YRR + +  V  +++        L++GAG  G ++I E +R Q+   Q V+
Sbjct  120  GGSRLFWRVYRRYFIDNAVEKKAT--------LVVGAGQGGSVLIREMLRSQDMRMQPVL  171

Query  180  GVIDDNPSKIGTYLRGIKILGNRNKIIEISEEKNVDLILIAMPSVDGKTKKEIIEICQST  239
            +V DD+  +  T    +K+ G  + I E+     +  I+IA+P++  K  +EI  IC+  
Sbjct  172  AVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIE  231

Query  240  RAKVKIIPGMYELIGGKVSLNRMRDIDLRDLLGREEVILDKKGIKDYIENKVVMVTGGGG  299
               +  +P + ++++G + +N ++ +++ DLLGR+ V LD   I   + NK ++VTG+GG
Sbjct  232  GVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGG  291

Query  300  SIGSELCRQIAKFSPKLLLILDIYENNAYELENEIISNFKNLKEKV-LIASVREEKRLEN  358
            SIGSE+CRQ++KF P+ +++L+  EN+ Y +++E+   + N  E V +IA V++  R+ +
Sbjct  292  SIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILE  351

Query  359  IFNEYKPQVIFHAAAHKHVPLMERNPEEAIKNNVIGTLNVAECAHKYGAERFVLISTDKA  418
            + NE+KP  ++HAAAHKHVPLME NP+EAI+NN++GT NVAE A      +FV+ISTDKA
Sbjct  352  VMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKA  411

Query  419  VNPTNVMGASKRMCEMIIQAI-DKNSNTEFVAVRFGNVLGSNGSVIPLFKKQIAKGGPVT  477
            VNP+NVMGA+KR+ EM+IQ++ + NS+T FVAVRFGNVLGS GSVIPLFK+QI  GGPVT
Sbjct  412  VNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVT  471

Query  478  LTHKKITRYFMLIPEAAQLVLQAGAYAKGGEIFVLDMGNPVLIYDLAKDLIKLSGFEPEV  537
            +TH  +TRYFM IPEA++LVLQAGA A+GGE+FVLDMG+PV I DLAK+LI+LSG   E 
Sbjct  472  VTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEE  530

Query  538  DIKIEITGLRPGEKLYEELLMDEEGLRKTSHEKIFIAKPGEY  579
            DI IE++G+RPGEKLYEELL  +E   +   EKI+ +K ++Y
Sbjct  531  DIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHY  572

300) capD in NC_012526


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  314 bits (1176),  Expect = 1e-86, Method: Compositional matrix adjust.
 Identities = 199/436 (46%), Positives = 312/436 (72%), Gaps = 5/436 (1%)

Query  134  SSPQRQRVLIVGAGEAGTLIAREMQRHPEAGLDAIGFLDDEPGKIRKRLLG-LPVFGRVD  192
            ++ +++  L+VGAG++G+++ REM R  +  ++++  +DD+  K +  +   + V G V+
Sbjct  136  NAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVE  195

Query  193  DLVDVAKREEAQEILIAVPSATGDFVRHVVDLARDAELRYRIIPGVFEILSGDVNLQQIR  252
            D+ ++ K+   + I+IA+P+ +   + ++  +     +    +P + ++LSG++++++++
Sbjct  196  DIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLK  255

Query  253  DVNLEDLLRRPPVQLNTNEIAGYLRGRVVLVTGAGGSIGSELVRQLVSFTPAKILLFGRG  312
             V++EDLL R PV+L+   I+  L  + +LVTGAGGSIGSE+ RQ+  F P KI+L+G+G
Sbjct  256  KVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHG  315

Query  313  ENSIFGIQQELIRNWPD-IDQVGLIGDVRDEARLRAVFERYRPEVIFHAAAHKHVPLMEE  371
            ENSI++I+QEL +   + I+ V +I+DV++ +R+  V + ++P  ++HAAAHKHVPLME 
Sbjct  316  ENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEY  375

Query  372  TPSEAILNNVIGTQNVVELCLEFGVGRLVNVSTDKAVNPTSIMGASKRVAEMVVSAGAAR  431
             P EAI NN++GT+NV E   E  V+++V +STDKAVNP+++MGA+KR+AEMV+ +    
Sbjct  376  NPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNED  435

Query  432  AREGQAFVSVRFGNVLGSRGSVVPTFMAQIRAGGPITVTHPEMVRYFMTIPEAARLVLQA  491
                 +FV+VRFGNVLGSRGSV+P F  QI +GGP+TVTHPEM RYFMTIPEA+RLVLQA
Sbjct  436  NSKT-SFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQA  494

Query  492  GGLAENGKVYVLNMGDPVKISDLAHDVIRLSGAR--NVDVVYSGIRPGEKLYEELLTSGE  549
            G+LA+ G V+VL+MG PVKI DLA ++IRLSG +  ++++ +SGIRPGEKLYEELL   E
Sbjct  495  GALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNE  554

Query  550  GVGATTHSEIYSAQLG  565
                     IY ++++
Sbjct  555  IHPQQVYEKIYRGKVD  570

301) capD in NC_020055


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  314 bits (1176),  Expect = 1e-86, Method: Compositional matrix adjust.
 Identities = 218/503 (44%), Positives = 350/503 (70%), Gaps = 15/503 (2%)

Query  64   GLYRGMWRYTSLRDLWHILEATFLQSLILVTVVLYKFGFDGFSRGIFIIDWMLTVFMCGG  123
             LY+  W Y+S+ +L  +L A     ++ + +V   ++   F R +++I WM+ +++ GG
Sbjct  63   NLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLR-LYFITWMMHLLLIGG  121

Query  124  FRVLIRSFYAYRDGNAITLSPESCPDNGSNVLIIGAGRAGEKVVREIKGSGQLKYSPVGF  183
             R++ R +  Y  +NA+         +    L++GAG++G  ++RE+  S +++  PV  
Sbjct  122  SRLFWRVYRRYFIDNAV---------EKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLA  172

Query  184  LDNDKSKRGRTIHG-VPVLGQLSDLHDLVENKCVNEILIAVAEASGEQMREIIDNCKKTG  242
            +D+DK+K+  TI   V V G + D+ +LV +  ++ I+IA++  S  ++ EI   C+  G
Sbjct  173  VDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEG  232

Query  243  LPYKILPGMDEIINGKVGIKALRDVSYQDLLGRSQVQLDTTSISKYLSGKTVLVTGCGGS  302
            +    +P ++++++G + ++ L+ V  +DLLGR  V+LD + IS+ L+ KT+LVTG GGS
Sbjct  233  VELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGS  292

Query  303  IGSELVRQVVRFKPAKIILVDASEANLYGIQMELHHELKFH-DYVTVLGSVQDFELLDST  361
            IGSE+ RQV +F P KIIL++ +E ++Y+I+ EL      + ++V V++ VQ+   +   
Sbjct  293  IGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEV  352

Query  362  FEKYKPHTIFHAAAYKHVPMMERNPWQAVQNNICGTRNVMTAADKHGVDRFVIVSTDKAV  421
             + +KP +++HAAA KHVP+ME NP +A++NNI GT+NV  +A    V +FV++STDKAV
Sbjct  353  MNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAV  412

Query  422  RPTNIMGASKRVTELLMHLFP--NSKTTFMAVRFgnvvgssgsvvPLFRRQIEKGGPVTV  479
             P+N+MGA+KR++E++++ +   NSKT+F+AVRFGNV+GS GSV+PLF+ QIE GGPVTV
Sbjct  413  NPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTV  472

Query  480  THPNVTRYFMSISEAAQLILQAGVMAEGGEIFILEMGLPVKIADMARDLIRLSGKEPDKD  539
            THP++TRYFM+I+EA++L+LQAG +A+GGE+F+L+MG PVKI D+A++LIRLSGK  + D
Sbjct  473  THPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKK-EED  531

Query  540  IEIVFTGLREGEKLYEELITDGE  562
            I I F+G+R GEKLYEEL+   E
Sbjct  532  IGIEFSGIRPGEKLYEELLNKNE  554

302) LBJ_4174 in NC_008511


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  314 bits (1177),  Expect = 1e-86, Method: Compositional matrix adjust.
 Identities = 214/496 (44%), Positives = 358/496 (73%), Gaps = 18/496 (3%)

Query  55   ACVFILSDIYRSIWVYASIHDLVEIIKVtllsslisttallFYNRFEQLSRMVPV--LDT  112
            A VF   ++Y+  W YAS+ +L+ ++K    S +++   + +      + R+  +  +  
Sbjct  59   AYVF---NLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMH  115

Query  113  LLLLSFLCIRSFSWRVFRDQYILKKSKEEGLPTLILGAGKIGATLLSEIRRHNELKLNPI  172
            LLL++    R F WRV+R +Y++ ++ E   +TL++GAG+ G+ L+ E+ R ++++++P+
Sbjct  116  LLLIG--GSRLF-WRVYR-RYFIDNAVEKK-ATLVVGAGQGGSVLIREMLRSQDMRMQPV  170

Query  173  GFLDDNVQKIGAHIQG-VPILAKIDQAEQMINRFGIKQVIIAISNPDGKLISRLIR--SF  229
              +DD+ +K    I   V + + +++  +++++F IK++IIAI+    K ++ + +  ++
Sbjct  171  LAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNI  230

Query  230  ESTDVKFKILPSLGSLFFDSPKLNQLREVQVEDLLGRPVVDLEVESIRSYLKGKSILITG  289
            E+ ++ FK +P++  ++ +   +N+L+ V+VEDLLGR  V+L++  I   L  K+IL+TG
Sbjct  231  EGVEL-FK-MPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTG  288

Query  290  AGGSIGSELCRQVAVFEPSRILLLDAAETPLYEIEYELGKKLQGQNIELVPIVADIKNLS  349
            AGGSIGSE+CRQV+ F+P +I+LL+ +E ++Y I+ EL+K   G+ IE+VP++AD++N +
Sbjct  289  AGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTY-GNRIEFVPVIADVQNKT  347

Query  350  RVSSIFEKHSPEVVFHSAAYKHVPMMEVNPTEAVMNNVLGTKNVADISRLSGVERFVLIS  409
            R+  + +   P  V+H+AA KHVP+ME NP EA+ NN+LGTKNVA+ ++ + V +FV+IS
Sbjct  348  RILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMIS  407

Query  410  TDKAVNPVNIMGASKRAAELYLQHVSRE-TKTKFITVRFGNVLGSNGSVIPRFREQIANG  468
            TDKAVNP N+MGA+KR AE+ +Q ++ + +KT F++VRFGNVLGS GSVIP F++QI +G
Sbjct  408  TDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESG  467

Query  469  GPVTVTHPDVIRYFMTIPEATQLVLQAGSMGECGEIFILEMGEPVKILNLAEEMIRLCGL  528
            GPVTVTHP++ RYFMTIPEA++LVLQAG++++ GE+F+L+MG PVKI++LA ++IRL G 
Sbjct  468  GPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-  526

Query  529  RPHVDIPIQFTGLRPG  544
            + + DI I+F+G+RPG
Sbjct  527  KKEEDIGIEFSGIRPG  542

303) LBL_4189 in NC_008509


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  314 bits (1176),  Expect = 1e-86, Method: Compositional matrix adjust.
 Identities = 214/496 (44%), Positives = 359/496 (73%), Gaps = 18/496 (3%)

Query  55   ACVFILSDIYRSIWVYASIHDLVEIIKVtllsslisttallFYNRFEQLSRMVPV--LDT  112
            A VF   ++Y+  W YAS+ +L+ ++K    S +++   + +      + R+  +  +  
Sbjct  59   AYVF---NLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMH  115

Query  113  LLLLSFLCIRSFSWRVFRDQYILKKSKEEGLPTLILGAGKIGATLLSEIRRHNELKLNPI  172
            LLL++    R F WRV+R +Y++ ++ E   +TL++GAG+ G+ L+ E+ R ++++++P+
Sbjct  116  LLLIG--GSRLF-WRVYR-RYFIDNAVEKK-ATLVVGAGQGGSVLIREMLRSQDMRMQPV  170

Query  173  GFLDDNVQKIGAHI-QGVPILAKIDQAEQMINRFGIKQVIIAISNPDGKLISRLIR--SF  229
              +DD+ +K    I + V + + +++  +++++F IK++IIAI+    K ++ + +  ++
Sbjct  171  LAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNI  230

Query  230  ESTDVKFKILPSLGSLFFDSPKLNQLREVQVEDLLGRPVVDLEVESIRSYLKGKSILITG  289
            E+ ++ FK +P++  ++ +   +N+L+ V+VEDLLGR  V+L++  I   L  K+IL+TG
Sbjct  231  EGVEL-FK-MPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTG  288

Query  290  AGGSIGSELCRQVAVFEPSRILLLDAAETPLYEIEYELGKKLQGQNIELVPIVADIKNLS  349
            AGGSIGSE+CRQV+ F+P +I+LL+ +E ++Y I+ EL+K   G+ IE+VP++AD++N +
Sbjct  289  AGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTY-GNRIEFVPVIADVQNKT  347

Query  350  RVSSIFEKHSPEVVFHSAAYKHVPMMEVNPTEAVMNNVLGTKNVADISRLSGVERFVLIS  409
            R+  + +   P  V+H+AA KHVP+ME NP EA+ NN+LGTKNVA+ ++ + V +FV+IS
Sbjct  348  RILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMIS  407

Query  410  TDKAVNPVNIMGASKRAAELYLQHVSRE-TKTKFITVRFGNVLGSNGSVIPRFREQIANG  468
            TDKAVNP N+MGA+KR AE+ +Q ++ + +KT F++VRFGNVLGS GSVIP F++QI +G
Sbjct  408  TDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESG  467

Query  469  GPVTVTHPDVIRYFMTIPEATQLVLQAGSMGECGEIFILEMGEPVKILNLAEEMIRLCGL  528
            GPVTVTHP++ RYFMTIPEA++LVLQAG++++ GE+F+L+MG PVKI++LA ++IRL G 
Sbjct  468  GPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-  526

Query  529  RPHVDIPIQFTGLRPG  544
            + + DI I+F+G+RPG
Sbjct  527  KKEEDIGIEFSGIRPG  542

304) HN6_00820 in NC_017481


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  314 bits (1178),  Expect = 8e-87, Method: Compositional matrix adjust.
 Identities = 233/526 (45%), Positives = 360/526 (69%), Gaps = 21/526 (3%)

Query  71   YFLKLYKSIWKYVSLSEMNRILLATIVTAIFHGIGITVLCTKMP-ISYYLMGPLFQFMFT  129
            Y ++LY   W Y S+SE+  +L A   + +   + +++L +  P +  Y++  + ++++ 
Sbjct  60   YVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLI  119

Query  130  VSVRF---AYR--FINLVRRRKQRNENAKYNSLiigagsagqiiiKELENSSVVQSVPKC  184
             + R+    YR  FI+        N   K  +L++GAG +G ++I+E+  S  ++  P  
Sbjct  120  GGSRLFWRVYRRYFID--------NAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVL  171

Query  185  VIDDDPNKWGRMLKNIPIIGG-REKIIEAVQKFDITQIIFTIPSASAKDKREILNICKET  243
             +DDD NK    + +   + G  E I E V+KF I +II++IP+ S K   EI +IC+  
Sbjct  172  AVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIE  231

Query  244  DCKLLTLPGVYQLLNEKVFLQHLKPVAVEDLLGREPIKADLGQIKQQIQGKVVLITGGGG  303
            +  L+ +P + ++L+  + +++LK V VEDLLGR+P+  D++ I +++  K +L+TG+GG
Sbjct  232  GVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGG  291

Query  304  SIGSELCRQIATYDPEQLIVFDIYENNAYSIEQELKRNYPN-LNLKVLIGSVRDQKRVDD  362
            SIGSE+CRQ++ +DP+++I+++  EN+ YSI+QEL + Y N +++  +I+ V+++ R+ +
Sbjct  292  SIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILE  351

Query  363  IFSSYRPDIVYHAAAHKHVPLMEGSPNEAVKNNVVGTYNTSKAALKHNAERFVLISTDKA  422
            + + ++P  VYHAAAHKHVPLME +P+EA++NN++GT N + +A   +  +FV+ISTDKA
Sbjct  352  VMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKA  411

Query  423  VNPTNAMGASKRICEMIIQMMDKDSRNSKKRTQFVAVRFGNVLGSNGSVIPLFKKQIAAG  482
            VNP+N MGA+KRI EM+IQ ++ D+     +T FVAVRFGNVLGS GSVIPLFK+QI +G
Sbjct  412  VNPSNVMGATKRIAEMVIQSLNEDN----SKTSFVAVRFGNVLGSRGSVIPLFKNQIESG  467

Query  483  GPVTVTHPDIIRYFMTISEAVGLVLQAGAYAAGGEIFVLDMGQPIKIDTLARNLIKLSGL  542
            GPVTVTHP++ RYFMTI+EA  LVLQAGA A GGE+FVLDMG+P+KI  LA+NLI+LSG 
Sbjct  468  GPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-  526

Query  543  HPDEDIKIKYIGLRPGEKLYEEKLMAEEGLQKTENQLIYIGKPIPF  588
              +EDI I + G+RPGEKLYEE L  +E   +   + IY GK   +
Sbjct  527  KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHY  572

305) LSL_0995 in NC_007929


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  314 bits (1177),  Expect = 9e-87, Method: Compositional matrix adjust.
 Identities = 234/526 (45%), Positives = 360/526 (69%), Gaps = 21/526 (3%)

Query  71   YFLKLYKSIWKYVSLSEMNRILLATIVTAIFHGIGITVLCTRMP-ISYYLMGPLFQFMFT  129
            Y ++LY   W Y S+SE+  +L A   + +   + +++L +  P +  Y++  + ++++ 
Sbjct  60   YVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLI  119

Query  130  VSVRF---AYR--FINLVRRRKQRNENAKYNSLiigagsagqiiiKELENSSVAQSVPKC  184
             + R+    YR  FI+        N   K  +L++GAG +G ++I+E+  S   +  P  
Sbjct  120  GGSRLFWRVYRRYFID--------NAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVL  171

Query  185  VIDDDPNKWGRMLKNIPIIGG-REKIIEAVQKFDITQIIFTIPSASAKDKREILNICKET  243
             +DDD NK    + +   + G  E I E V+KF I +II++IP+ S K   EI +IC+  
Sbjct  172  AVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIE  231

Query  244  DCKLLTLPGVYQLLNEEVFLQHLKPVAVEDLLGREPIKADLGQIKKQIQGKVVLITGGGG  303
            +  L+ +P + ++L+ E+ +++LK V VEDLLGR+P+  D++ I +++  K +L+TG+GG
Sbjct  232  GVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGG  291

Query  304  SIGSELCRQIATYDPKQLIVFDIYENNAYSIEQELKRNYPN-LNLKVLIGSVRDQKRVDD  362
            SIGSE+CRQ++ +DP+++I+++  EN+ YSI+QEL + Y N +++  +I+ V+++ R+ +
Sbjct  292  SIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILE  351

Query  363  IFSSYRPDIVYHAAAHKHVPLMEGSPNEAVKNNVVGTYNTSKAALKYNAERFVLISTDKA  422
            + + ++P  VYHAAAHKHVPLME +P+EA++NN++GT N + +A   +  +FV+ISTDKA
Sbjct  352  VMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKA  411

Query  423  VNPTNAMGASKRICEMIIQMMDKDSRNRKKRTQFVAVRFGNVLGSNGSVIPLFKKQIAAG  482
            VNP+N MGA+KRI EM+IQ ++ D+     +T FVAVRFGNVLGS GSVIPLFK+QI +G
Sbjct  412  VNPSNVMGATKRIAEMVIQSLNEDN----SKTSFVAVRFGNVLGSRGSVIPLFKNQIESG  467

Query  483  GPVTVTHPDIIRYFMTISEAVGLVLQAGAYAAGGEIFVLDMGQPIKIDTLARNLIKLSGL  542
            GPVTVTHP++ RYFMTI+EA  LVLQAGA A GGE+FVLDMG+P+KI  LA+NLI+LSG 
Sbjct  468  GPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-  526

Query  543  HPDEDIEIKYIGLRPGEKLYEEKLMAEEGLQKTENQLIYIGKPIPF  588
              +EDI I + G+RPGEKLYEE L  +E   +   + IY GK   +
Sbjct  527  KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHY  572

306) Deima_2963 in NC_014958


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  313 bits (1175),  Expect = 1e-86, Method: Compositional matrix adjust.
 Identities = 208/439 (48%), Positives = 314/439 (72%), Gaps = 5/439 (1%)

Query  131  LQAAPQRQRVLIVGAGDAGSLIAREMQRHPEAGLEPIGFLDDEPRKIRGRVVG-LPVFGP  189
            ++ A +++  L+VGAG++GS++ REM R  +  ++P+  +DD+  K +  +   + V G 
Sbjct  134  IDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGY  193

Query  190  IDDLVTVAKREQAQEILIAVPSADGQFVRRVVSLARDTGLRYRIIPGMFEILSSDVTISQ  249
            ++D+  + K+ + + I+IA+P+   + +  +  +    G+    +P + ++LS+++ +++
Sbjct  194  VEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNN  253

Query  250  IRDVNLEDLLRRPPVRLNTAEIASYLKGRVILVTGAGGSIGSEIIRQLAVFGPSTVLLFG  309
            ++ V++EDLL R PV L+ A I+  L  + ILVTGAGGSIGSEI RQ++ F+P  ++L+G
Sbjct  254  LKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLG  313

Query  310  RGENSIFSIQQELLRTWPE-IEQVGLIGDVRDAARLRAVFERYRPEVVFHAAAHKHVPLM  368
            +GENSI+SI+QEL +T  + IE V +I+DV++ +R+  V + ++P  V+HAAAHKHVPLM
Sbjct  314  HGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLM  373

Query  369  EEAPSEAILNNVIGTQNVVDLCLEFGVSRLVNISTDKAVNPTSVMGASKRVAEMVVSaga  428
            E  P EAI NN++GT+NV +   E  VS++V ISTDKAVNP++VMGA+KR+AEMV+ +  
Sbjct  374  EYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLN  433

Query  429  arardaqaFVSVRFGNVLGSRGSVVPTFMAQIRAGGPITVTHPEMVRYFMTIPEAARLVL  488
                 +  FV+VRFGNVLGSRGSV+P F  QI +GGP+TVTHPEM RYFMTIPEA+RLVL
Sbjct  434  EDNSKTS-FVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVL  492

Query  489  QAGGLAENGKVYVLDMGEPVKIADLAHDVIRLSGAW--NVDVVYSGIRPGEKLYEELLTT  546
            QAG+LA+ G V+VLDMG PVKI DLA ++IRLSG    ++++ +SGIRPGEKLYEELL  
Sbjct  493  QAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNK  552

Query  547  SEGADATTHSEIFSARLAQ  565
            +E         I+ +++ +
Sbjct  553  NEIHPQQVYEKIYRGKVDH  571

307) TVNIR_1899 in NC_019902


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  313 bits (1175),  Expect = 1e-86, Method: Compositional matrix adjust.
 Identities = 213/492 (44%), Positives = 342/492 (70%), Gaps = 19/492 (3%)

Query  63   YMY-FGLYRGIWRFASVPDLMRILRAVWVGAATTILLLFLLRRVGDVPRAVLLVYPVFLT  121
            + Y F LY+  W +ASV++LM +L+AV    +++I++ +LL  +     + L +Y  F+T
Sbjct  58   FAYVFNLYHRAWEYASVSELMSVLKAV----TSSIVVTLLLVSLLISESPFLRLY--FIT  111

Query  122  -----MGLTAPRLFYRWFKDHFQPKG-SRRRALIVGAGWSGDLLVRELIKSREY--LPVG  173
                 + + ++RLF R ++  F  ++  ++ +L+VGAG +G +L+RE+++S++    PV 
Sbjct  112  WMMHLLLIGGSRLFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVL  171

Query  174  FLDDDPRKLGRDLHG-VPVLGSVGeldrllreldVEMVLIAMPTADARLMRRIVDVAAHE  232
             +DDD  K    +   V V G V ++  L++ + +  ++IA+PT   + +  I  +   E
Sbjct  172  AVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIE  231

Query  233  GVACVTLPSLRELADGRVEVSRLREVEIDDLLGREVITLDDAGLHAFLEGKRVLVTGAGG  292
            GV    +P++ ++  G +EV+ L+ VE++DLLGR+ + LD A +   L  K +LVTGAGG
Sbjct  232  GVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGG  291

Query  293  SIGSELCRQVAQYGPERVVMLDHAEYGLYSIERDMQR-LPSPVDFTPVLGDVTDAVRMRE  351
            SIGSE+CRQV++++P+++++L+H+E ++YSI++++ +   + ++F PV++DV +  R+ E
Sbjct  292  SIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILE  351

Query  352  VFASFRPDIVLHAAAYKHVPLLEDNAVEGVKVNVLGTRMVADLAATHGCEKFVLVSTDKA  411
            V   F+P  V HAAA KHVPL+E N+ E+++ N+LGT+ VA+ A      KFV++STDKA
Sbjct  352  VMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKA  411

Query  412  VRPTNVMGASKRVAELYCQSVGEADG-TAFMVTRFGNVMGSAGSVVPLFRRQIAEGGPVT  470
            V P+NVMGA+KR+AE+  QS+ E ++ T+F+  RFGNV+GS GSV+PLF+ QI  GGPVT
Sbjct  412  VNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVT  471

Query  471  VTHPDITRYFMTIPEAVSLILQAASMGAAGEVFVLDMGKPIRIRDLAEEMIRLSGHEPGR  530
            VTHP++TRYFMTIPEA  L+LQA++++ +GEVFVLDMGKP++I DLA ++IRLSG     
Sbjct  472  VTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEE-  530

Query  531  DIDVAFIGLRPG  542
            DI++ F G+RPG
Sbjct  531  DIGIEFSGIRPG  542

308) Npun_F2440 in NC_010628


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  313 bits (1172),  Expect = 2e-86, Method: Compositional matrix adjust.
 Identities = 229/502 (46%), Positives = 348/502 (70%), Gaps = 27/502 (5%)

Query  52   FGFYRRYWRYASVEELTYIAMLMVGAIVIQSMTFNLLNHILPFVTDNLPRSLPFIDGLLS  111
            F +Y+R W YASV EL  +   + ++IV+  +  +LL    PF+       L FI  ++ 
Sbjct  62   FNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFL------RLYFITWMMH  115

Query  112  CIFIGMLRFSFRVVERFIQRQGVFNPRERVLIIGAGSAGVSLVQDMQSKPKLGFHAVAFI  171
             ++IG  R+  RV  R++  ++V   +   L++GAG +G  L+++M     +  ++V  +
Sbjct  116  LLLIGGSRLFWRVYRRYFIDNAV--EKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAV  173

Query  172  DDDPRKLNVQIRG-IPVVGDRHQIPDTLKSLQIHKVIIAMPTVAGHVIREIVDICKATGI  230
            DDD  K ++ I   + V G  ++IP+ +K ++I K+IIA+PT++   + EI  IC+  G+
Sbjct  174  DDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGV  233

Query  231  QTSTLPGIYEILNdrvrvdsirdvriedLLRREPIQTDVEQVHKFIKGKTVLITGAGGSI  290
            +   +P I ++L++ + V++++ V +EDLL R+P++ D+  + + +  KT+L+TGAGGSI
Sbjct  234  ELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSI  293

Query  291  GSELCRQIFKCHPAEMILMGHGENSIFNIQQELEKLIQILKNDGKVQRYTPRIYTF---I  347
            GSE+CRQ+ K +P  +IL+GHGENSI++I+QEL K             Y  RI  F   I
Sbjct  294  GSEICRQVSKFDPQKIILLGHGENSIYSIHQELSK------------TYGNRI-EFVPVI  340

Query  348  GDIRYSVRLKQAFEQFQPNVIFHAAAHKHVPLMELNSSEAITNNVLGTKNLLDMALQYNV  407
            +D++   R+ +  ++F+P  ++HAAAHKHVPLME N+ EAI NN+LGTKN+ + A + +V
Sbjct  341  ADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEV  400

Query  408  QNFVMISTDKAVNPTSVMGASKRVAEMLVLQAAKESGK-PYVVVRFGNVLGSRGSVVPTF  466
             +FVMISTDKAVNP++VMGA+KR+AEM++     +++K ++V VRFGNVLGSRGSV+P F
Sbjct  401  SKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLF  460

Query  467  KKQIASGGPVTVTHPDICRYFMTIPEAVQLVLQAAVLSRGGEVLMLNMGEPVKIVDLAKE  526
            K+QI SGGPVTVTHP++ RYFMTIPEA +LVLQA+ L++GGEV++L+MG PVKIVDLAK+
Sbjct  461  KNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKN  520

Query  527  LIRLSGYEVNKDIDILFTGLRP  548
            LIRLSG   + DI+I F+G+RP
Sbjct  521  LIRLSG-KKEEDIGIEFSGIRP  541

309) capD in NC_005824


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  313 bits (1173),  Expect = 2e-86, Method: Compositional matrix adjust.
 Identities = 205/486 (43%), Positives = 351/486 (73%), Gaps = 11/486 (2%)

Query  62   DIYRSIWVYASIHDLVEIIKVtllsslisttallFYNRFEQLSRMVPV--LDTLLLLSFL  119
            ++Y+  W YAS+ +L+ ++K    S +++   + +      + R+  +  +  LLL++  
Sbjct  63   NLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIG--  120

Query  120  CIRSFSWRVFRDQYILKKSKEEGLPTLILGAGKVGATLLSEIRRHNELKLNPVGFLDDNV  179
              R F WRV+R +Y++ ++ E   +TL++GAG+ G+ L+ E+ R ++++++PV  +DD+ 
Sbjct  121  GSRLF-WRVYR-RYFIDNAVEKK-ATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDK  177

Query  180  QKIGAHIQG-IPILAKIDQAEQIINRFGVKQVIIAMSSPDGKLISRLIRSFEHTDVKFKI  238
            +K    I   + + + +++  +++++F +K++IIA+++   K ++ + +  +  +V +  
Sbjct  178  NKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFK  237

Query  239  LPSLGSLFFDSPKLNQLREVQVEDLLGRPVVDLEIESIRSYLKGKSILVSGAGGSIGSEL  298
            +P++  ++ +   +N+L+ V+VEDLLGR  V+L++  I   L  K+ILV+GAGGSIGSE+
Sbjct  238  MPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEI  297

Query  299  CRQVAVFEPSRILLLDSAETPLYEIEYELGKKLQGQNIELVPIVADIKNLSRISSIFEKH  358
            CRQV+ F+P +I+LL+ +E ++Y I+ EL+K   G+ IE+VP++AD++N +RI  + +  
Sbjct  298  CRQVSKFDPQKIILLGHGENSIYSIHQELSKTY-GNRIEFVPVIADVQNKTRILEVMNEF  356

Query  359  SPEVVFHSAAYKHVPMMEINPTEAVMNNVLGTKNIADISRISGVERFVLISTDKAVNPVN  418
             P  V+H+AA KHVP+ME NP EA+ NN+LGTKN+A+ ++ + V +FV+ISTDKAVNP N
Sbjct  357  KPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSN  416

Query  419  IMGASKRAAELYLQHISRE-TRTKFITVRFGNVLGSNGSVIPRFREQIANGGPVTVTHPD  477
            +MGA+KR AE+ +Q ++ + ++T F++VRFGNVLGS GSVIP F++QI +GGPVTVTHP+
Sbjct  417  VMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPE  476

Query  478  VIRYFMTIPEATQLVLQAGSMGECGEIFILEMGEPVKILNLAEEMIRLCGLRPHVDIPIQ  537
            + RYFMTIPEA++LVLQAG++++ GE+F+L+MG PVKI++LA ++IRL G + + DI I+
Sbjct  477  MTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIGIE  535

Query  538  FTGLRP  543
            F+G+RP
Sbjct  536  FSGIRP  541

310) LB_170 in NC_004343


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  313 bits (1173),  Expect = 2e-86, Method: Compositional matrix adjust.
 Identities = 205/486 (43%), Positives = 351/486 (73%), Gaps = 11/486 (2%)

Query  62   DIYRSIWVYASIHDLVEIIKVtllsslisttallFYNRFEQLSRMVPV--LDTLLLLSFL  119
            ++Y+  W YAS+ +L+ ++K    S +++   + +      + R+  +  +  LLL++  
Sbjct  63   NLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIG--  120

Query  120  CIRSFSWRVFRDQYILKKSKEEGLPTLILGAGKVGATLLSEIRRHNELKLNPVGFLDDNV  179
              R F WRV+R +Y++ ++ E   +TL++GAG+ G+ L+ E+ R ++++++PV  +DD+ 
Sbjct  121  GSRLF-WRVYR-RYFIDNAVEKK-ATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDK  177

Query  180  QKIGAHIQG-IPILAKIDQAEQIINRFGVKQVIIAMSSPDGKLISRLIRSFEHTDVKFKI  238
            +K    I   + + + +++  +++++F +K++IIA+++   K ++ + +  +  +V +  
Sbjct  178  NKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFK  237

Query  239  LPSLGSLFFDSPKLNQLREVQVEDLLGRPVVDLEIESIRSYLKGKSILVSGAGGSIGSEL  298
            +P++  ++ +   +N+L+ V+VEDLLGR  V+L++  I   L  K+ILV+GAGGSIGSE+
Sbjct  238  MPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEI  297

Query  299  CRQVAVFEPSRILLLDSAETPLYEIEYELGKKLQGQNIELVPIVADIKNLSRISSIFEKH  358
            CRQV+ F+P +I+LL+ +E ++Y I+ EL+K   G+ IE+VP++AD++N +RI  + +  
Sbjct  298  CRQVSKFDPQKIILLGHGENSIYSIHQELSKTY-GNRIEFVPVIADVQNKTRILEVMNEF  356

Query  359  SPEVVFHSAAYKHVPMMEINPTEAVMNNVLGTKNIADISRISGVERFVLISTDKAVNPVN  418
             P  V+H+AA KHVP+ME NP EA+ NN+LGTKN+A+ ++ + V +FV+ISTDKAVNP N
Sbjct  357  KPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSN  416

Query  419  IMGASKRAAELYLQHISRE-TRTKFITVRFGNVLGSNGSVIPRFREQIANGGPVTVTHPD  477
            +MGA+KR AE+ +Q ++ + ++T F++VRFGNVLGS GSVIP F++QI +GGPVTVTHP+
Sbjct  417  VMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPE  476

Query  478  VIRYFMTIPEATQLVLQAGSMGECGEIFILEMGEPVKILNLAEEMIRLCGLRPHVDIPIQ  537
            + RYFMTIPEA++LVLQAG++++ GE+F+L+MG PVKI++LA ++IRL G + + DI I+
Sbjct  477  MTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIGIE  535

Query  538  FTGLRP  543
            F+G+RP
Sbjct  536  FSGIRP  541

311) LIF_B140 in NC_017552


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  313 bits (1173),  Expect = 2e-86, Method: Compositional matrix adjust.
 Identities = 205/486 (43%), Positives = 351/486 (73%), Gaps = 11/486 (2%)

Query  62   DIYRSIWVYASIHDLVEIIKVtllsslisttallFYNRFEQLSRMVPV--LDTLLLLSFL  119
            ++Y+  W YAS+ +L+ ++K    S +++   + +      + R+  +  +  LLL++  
Sbjct  63   NLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIG--  120

Query  120  CIRSFSWRVFRDQYILKKSKEEGLPTLILGAGKVGATLLSEIRRHNELKLNPVGFLDDNV  179
              R F WRV+R +Y++ ++ E   +TL++GAG+ G+ L+ E+ R ++++++PV  +DD+ 
Sbjct  121  GSRLF-WRVYR-RYFIDNAVEKK-ATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDK  177

Query  180  QKIGAHIQG-IPILAKIDQAEQIINRFGVKQVIIAMSSPDGKLISRLIRSFEHTDVKFKI  238
            +K    I   + + + +++  +++++F +K++IIA+++   K ++ + +  +  +V +  
Sbjct  178  NKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFK  237

Query  239  LPSLGSLFFDSPKLNQLREVQVEDLLGRPVVDLEIESIRSYLKGKSILVSGAGGSIGSEL  298
            +P++  ++ +   +N+L+ V+VEDLLGR  V+L++  I   L  K+ILV+GAGGSIGSE+
Sbjct  238  MPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEI  297

Query  299  CRQVAVFEPSRILLLDSAETPLYEIEYELGKKLQGQNIELVPIVADIKNLSRISSIFEKH  358
            CRQV+ F+P +I+LL+ +E ++Y I+ EL+K   G+ IE+VP++AD++N +RI  + +  
Sbjct  298  CRQVSKFDPQKIILLGHGENSIYSIHQELSKTY-GNRIEFVPVIADVQNKTRILEVMNEF  356

Query  359  SPEVVFHSAAYKHVPMMEINPTEAVMNNVLGTKNIADISRISGVERFVLISTDKAVNPVN  418
             P  V+H+AA KHVP+ME NP EA+ NN+LGTKN+A+ ++ + V +FV+ISTDKAVNP N
Sbjct  357  KPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSN  416

Query  419  IMGASKRAAELYLQHISRE-TRTKFITVRFGNVLGSNGSVIPRFREQIANGGPVTVTHPD  477
            +MGA+KR AE+ +Q ++ + ++T F++VRFGNVLGS GSVIP F++QI +GGPVTVTHP+
Sbjct  417  VMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPE  476

Query  478  VIRYFMTIPEATQLVLQAGSMGECGEIFILEMGEPVKILNLAEEMIRLCGLRPHVDIPIQ  537
            + RYFMTIPEA++LVLQAG++++ GE+F+L+MG PVKI++LA ++IRL G + + DI I+
Sbjct  477  MTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIGIE  535

Query  538  FTGLRP  543
            F+G+RP
Sbjct  536  FSGIRP  541

312) Alvin_3100 in NC_013851


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  313 bits (1172),  Expect = 2e-86, Method: Compositional matrix adjust.
 Identities = 216/525 (42%), Positives = 353/525 (68%), Gaps = 16/525 (3%)

Query  63   WAFGLYRGVWRFASLNDLVRIalavlvgtalllfvlfalNRMAYVPRSLPVLFV--IFQL  120
              F LY+  W +AS+++L+ +  AV  +  + L+++  L      +  L + F+  + +L
Sbjct  60   YVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLIS---ESPFLRLYFITWMMHL  116

Query  121  MLLAGPRL---LYRW-LKDRRLDFSGGQRVLIVGAGRAGEMLVRDLLRDRQCGYVPV-AF  175
            +L++G+RL   +YR+ + D  ++    +  L+VGAG++G +L+R++LR ++    PV A 
Sbjct  117  LLIGGSRLFWRVYRRYFIDNAVE---KKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAV  173

Query  176  VDDKPRRQGGVVHGVPIRGTTDDIPRLVELFGIDVILLSVPSASAQQMQRLVGLCEAAGR  235
             DDK +++  + + V ++G  +DIP LV  F I  I++++P+ S ++++ +  +C+  G 
Sbjct  174  DDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGV  233

Query  236  PFRTVPQTKELMAGRVAVNQLRAVSIEDLLGRDPVTLDWASIEQGLAGRVVLVSGAGGSI  295
             +  +P+  ++++G + VN+L+ V +EDLLGRDPV LD A I + L+ + +LV+GAGGSI
Sbjct  234  ELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSI  293

Query  296  GSELCRQLCRCAPRLLILVDHSEYNLYRIETELLDG-PEPPPLSRHLIDVTNATALDRLF  354
            GSE+CRQ+ +  P+ +IL++H+E ++Y I+ EL     +   +   + DV N T +  + 
Sbjct  294  GSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVM  353

Query  355  AQRRPDVVFHAAAYKHVPLLQDQVLAALDNNVLGTRTIAAAADAWGCERFVLISTDKAVN  414
             + +P  V+HAAA KHVPL++ +   A+ NN+LGT+ +A +A      +FV+ISTDKAVN
Sbjct  354  NEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVN  413

Query  415  PTNVMGASKRFAELICQDM-QRRSACRFMTVRFGNVLGSAGSVVPRFQQQIERGGPLTVT  473
            P+NVMGA+KR+AE++ Q + +  S   F++VRFGNVLGS GSV+P F++QIE GGP+TVT
Sbjct  414  PSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVT  473

Query  474  HPEIERFFMTIPEACQLIMQAAVIGQGGETFVLDMGEPVKIRYLAEQMIRLSGREPGRDI  533
            HPE+ R+FMTIPEA +L++QA+ ++QGGE FVLDMG PVKI  LA ++IRLSG+    DI
Sbjct  474  HPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEE-DI  532

Query  534  RIEYTGLRPGEKLYEELFYPTEGFADTPHPRIHIARCAEILEAGV  578
             IE++G+RPGEKLYEEL+   E  ++    +I  ++  + + + V
Sbjct  533  GIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEV  577

313) Sulac_3375 in NC_016884


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  312 bits (1171),  Expect = 3e-86, Method: Compositional matrix adjust.
 Identities = 193/446 (44%), Positives = 316/446 (71%), Gaps = 10/446 (2%)

Query  125  WRFLLRSFYDISWSPRSRARERVLIVGAGKAGQLVAEELLRHPEVGLAVGF-LDDDMQKV  183
            WR + R ++       +  +   L+VGAG++G ++  E+LR  ++ +   + +DDD +K 
Sbjct  126  WR-VYRRYF----IDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQ  180

Query  184  GFQIGP-LKVLGTTHDIRTIVRDHQIDQVLLAMPSASGRVIRPLVEECRDLGIKVRILPA  242
               I   +KV G  +DI  +V+  +I ++++A+P+ S + +  +   C   G+ +  +P 
Sbjct  181  KMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPN  240

Query  243  INQMIGGQVSVRQIRDVQIEDLLQREPAVIDLGEIAGYITGRVVMVTGAGGTIGSELARQ  302
            I+++++G++ V +++ V++EDLL R+P  +D++ I+  +T + ++VTGAGG+IGSE+ RQ
Sbjct  241  IEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQ  300

Query  303  VAPFAPRQLVLLGLDETSIFEIDRDMRLRFPD-VPVVPIVADLRDRGRLERIFGAYRPQV  361
            V+ F P++++LLG +E SI+ I++++   + + +  VP++AD++++ R+  +   ++P  
Sbjct  301  VSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYA  360

Query  362  IFHAAAHKHVPLMEQQPDEAIDNNVAALWQLADMSHRQGVETFVFISTDKAVNPTSVYGA  421
            ++HAAAHKHVPLME +P+EAI NN+ +  ++A+ +    V  FV ISTDKAVNP++V GA
Sbjct  361  VYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGA  420

Query  422  TKRIGELLVR-VYASRSSTRFVTVRFGNVLGSRGSVIPIFQQQIAQGGPVTVTHPDMVRY  480
            TKRI+E++++ +    S T FV+VRFGNVLGSRGSVIP+F++QI  GGPVTVTHP+M RY
Sbjct  421  TKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRY  480

Query  481  FMTVSEACQLVIQAGAMGSSGEIYVLDMGEPIRILDLATNLIRLSGLRPGVDIDIVFTGI  540
            FMT++EA +LV+QAGA++ +GE++VLDMG P++I+DLA NLIRLSG +   DI+I F+GI
Sbjct  481  FMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIGIEFSGI  539

Query  541  RPGEKLYEELLTAEDETRTTRHERIF  566
            RPGEKLYEELL  ++       E+I+
Sbjct  540  RPGEKLYEELLNKNEIHPQQVYEKIY  565

314) TPY_3676 in NC_015757


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  312 bits (1171),  Expect = 3e-86, Method: Compositional matrix adjust.
 Identities = 193/446 (44%), Positives = 316/446 (71%), Gaps = 10/446 (2%)

Query  125  WRFLLRSFYDISWSPRSRARERVLIVGAGKAGQLVAEELLRHPEVGLAVGF-LDDDMQKV  183
            WR + R ++       +  +   L+VGAG++G ++  E+LR  ++ +   + +DDD +K 
Sbjct  126  WR-VYRRYF----IDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQ  180

Query  184  GFQIGP-LKVLGTTHDIRTIVRDHQIDQVLLAMPSASGRVIRPLVEECRDLGIKVRILPA  242
               I   +KV G  +DI  +V+  +I ++++A+P+ S + +  +   C   G+ +  +P 
Sbjct  181  KMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPN  240

Query  243  INQMIGGQVSVRQIRDVQIEDLLQREPAVIDLGEIAGYITGRVVMVTGAGGTIGSELARQ  302
            I+++++G++ V +++ V++EDLL R+P  +D++ I+  +T + ++VTGAGG+IGSE+ RQ
Sbjct  241  IEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQ  300

Query  303  VAPFAPRQLVLLGLDETSIFEIDRDMRLRFPD-VPVVPIVADLRDRGRLERIFGAYRPQV  361
            V+ F P++++LLG +E SI+ I++++   + + +  VP++AD++++ R+  +   ++P  
Sbjct  301  VSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYA  360

Query  362  IFHAAAHKHVPLMEQQPDEAIDNNVAALWQLADMSHRQGVETFVFISTDKAVNPTSVYGA  421
            ++HAAAHKHVPLME +P+EAI NN+ +  ++A+ +    V  FV ISTDKAVNP++V GA
Sbjct  361  VYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGA  420

Query  422  TKRIGELLVR-VYASRSSTRFVTVRFGNVLGSRGSVIPIFQQQIAQGGPVTVTHPDMVRY  480
            TKRI+E++++ +    S T FV+VRFGNVLGSRGSVIP+F++QI  GGPVTVTHP+M RY
Sbjct  421  TKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRY  480

Query  481  FMTVSEACQLVIQAGAMGSSGEIYVLDMGEPIRILDLATNLIRLSGLRPGVDIDIVFTGI  540
            FMT++EA +LV+QAGA++ +GE++VLDMG P++I+DLA NLIRLSG +   DI+I F+GI
Sbjct  481  FMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIGIEFSGI  539

Query  541  RPGEKLYEELLTAEDETRTTRHERIF  566
            RPGEKLYEELL  ++       E+I+
Sbjct  540  RPGEKLYEELLNKNEIHPQQVYEKIY  565

315) wbfY in NC_004347


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  311 bits (1166),  Expect = 7e-86, Method: Compositional matrix adjust.
 Identities = 215/483 (45%), Positives = 345/483 (72%), Gaps = 25/483 (5%)

Query  121  LVFVGGARAL----MRSLVGAGINRRGEPVIIYGAGVSGRQTAIALAQSHEY--HPVAFV  174
            L+++GG+R +     R +++ ++++++  V+  GAG +G      + +S++   +PV  V
Sbjct  116  LLLIGGSRLFWRVYRRYFIDNAVEKKATLVV--GAGQGGSVLIREMLRSQDMRMQPVLAV  173

Query  175  DDDESLHNTSIQG---LHVYASNQLSKLIKQRPTTRVLLAMPSASRSRRQEIINQLEPLT  231
            DDD + ++ +I     ++ Y  ++++ L+K+    ++++A+P+ S+ R +EI +  +   
Sbjct  174  DDDKNKQKMTITERVKVQGYV-EDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEG  232

Query  232  VKVMTLPAMADLVSGDKLFSDVKEVEIEDLLGRDSVAPRQHLLTANIKNKVVMVTGAGGS  291
            V +  +P + D++SG+   +++K VE+EDLLGRD+V     L++ ++ NK ++VTGAGGS
Sbjct  233  VELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGS  292

Query  292  IGSELCRQILKQLPKQLVLFELSEFALYSIERELSATATELGIDVEIVPIMGSVQRENRV  351
            IGSE+CRQ+ K  P++++L+  +E ++YSI++ELS T    G  +E+VP+++ VQ   R+
Sbjct  293  IGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKT---YGNRIEFVPVIADVQNKTRI  349

Query  352  QAVMQAFKVQTVYHAAAYKHVPLVEHNVVEGVRNNVFGTLYTARAAIAAKVETFVLVSTD  411
              VM+ FK  +VYHAAA KHVPL+E N  E++RNN++GT   A +A  + V  FV++STD
Sbjct  350  LEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTD  409

Query  412  KAVRPTNVMGTTKRMAELALQALAKENHHTRFCMVRFGNVLGSSGSVVPLFRKQIANGGP  471
            KAV P+NVMG+TKR+AE+ +Q+L  +N  T F  VRFGNVLGS GSV+PLF++QI +GGP
Sbjct  410  KAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGP  469

Query  472  VTVTHPEITRFFMTIPEASQLVIQAGAMGKGGDVFVLDMGKSVKIIDLAAKMIRLSGYDV  531
            VTVTHPE+TR+FMTIPEAS+LV+QAGA+++GG+VFVLDMGK+VKI+DLA ++IRLSG   
Sbjct  470  VTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG---  526

Query  532  KDEANPNGDIAIEFTGLRPGEKLYEELLIGDDVTGTD-HERIMTAN-EIYLPWVELELIL  589
                + + DI+IEF+G+RPGEKLYEELL  +++   +  E+I  ++ + Y+   E++LI+
Sbjct  527  ----KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIK-TEVDLIV  581

Query  590  NRL  592
            + L
Sbjct  582  EDL  584

316) ebA5907 in NC_006513


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  311 bits (1164),  Expect = 9e-86, Method: Compositional matrix adjust.
 Identities = 206/513 (41%), Positives = 353/513 (69%), Gaps = 14/513 (2%)

Query  65   FGLYRGVWRFASLTDLAKIVQAVLIGTTLLLAILFVFNRMAYVPRSLPMLFV--VYQIML  122
            F LY+  W +AS+++L  +++AV  +  + L ++   + +   +  L + F+  + +++L
Sbjct  62   FNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLV---SLLISESPFLRLYFITWMMHLLL  118

Query  123  LAGPRLMYRWVKDRR--IDPGTGKR-VLIVGAGSDGEMLVRDLLQDRDAGYLPIAFVDDH  179
            ++G+RL   W   RR  ID +  K+  L+VGAG +G +L+R++L+ +D    P+  VDD+
Sbjct  119  IGGSRLF--WRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDD  176

Query  180  HQRLGRTVHG-VPIRGTIDELPKVVDVFGIDLVLLAKPNATARQMQHMVDLCEATGKPFR  238
             ++   T+   V ++G ++++P +V  F I  +++A P  + ++++++  +C+  G  + 
Sbjct  177  KNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELF  236

Query  239  TVPPTKDLVAGRVAAGQLRQVSIEDLLGRDPVSLDWVGIRRSLSDHVVLVSGAGGSIGSE  298
             +P   D+++G +   +L++V +EDLLGRDPV LD   I R L++  +LV+GAGGSIGSE
Sbjct  237  KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSE  296

Query  299  LCRQLCRCNPRLLILIDHSEFNLYSIETELLES-PDAPPIARHLLSVTDAVGVRQVFERY  357
            +CRQ+ + +P+ +IL++H+E ++YSI+ EL  +  +   +   +  V +   + +V + +
Sbjct  297  ICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEF  356

Query  358  RPQVVFHAAAYKHVPLLEDQVEAAVRNNVVGTQVMaqaaaacacERFVLISTDKAVNPTN  417
            +P  V+HAAA KHVPL+E + + A+RNN++GT+ +A++A      +FV+ISTDKAVNP+N
Sbjct  357  KPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSN  416

Query  418  VMGATKRLAELICQA-QDSRAGSRFMTVRFGNVLGSAGSVVPRFQRQIERGGPVTVTHPD  476
            VMGATKR+AE++ Q+ ++  + + F++VRFGNVLGS GSV+P F+ QIE GGPVTVTHP+
Sbjct  417  VMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPE  476

Query  477  IERFFMTIPEACQLIMQAAAIGDDADTFVLDMGEPVKIRYLAEQMILLSGRQPGRDIRIE  536
            + R+FMTIPEA +L++QA+A++++++ FVLDMG PVKI  LA ++I LSG++   DI IE
Sbjct  477  MTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEE-DIGIE  535

Query  537  YTGLRPGEKLYEDLFYPAEIFADTPHPRIHIAR  569
            ++G+RPGEKLYE+L+   EI ++    +I  ++
Sbjct  536  FSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGK  568

317) EUBELI_00082 in NC_012778


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  310 bits (1162),  Expect = 1e-85, Method: Compositional matrix adjust.
 Identities = 231/487 (48%), Positives = 335/487 (69%), Gaps = 12/487 (2%)

Query  71   VFRLYHSLWQYASIAEVYRIAEACITVEVVHFLSNKMVGNMLP--RSCYFNAAIYLIIAI  128
            VF LYH  W+YAS++E+  +  A  +  VV +L   ++ +  P  R  ++   + L++ I
Sbjct  61   VFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLL-I  119

Query  129  CASRFMYRMIRTVLNKY--RNIKTSNNVMIIGAGEATNVIMREIQNSSYLANSNIACIID  186
             +SR+  R+ R    +Y   N    +  +++GAG++ +V++RE+  S  +    +  + D
Sbjct  120  GGSRLFWRVYR----RYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDD  175

Query  187  DDRRKVGKYIRGVKVIGTRDKIKEAAKLYDIDEIIFAIPSASNEVKRDILNICKETDCTL  246
            D  ++       VKV G  + I E  K + I  II+AIP+ S+    +I +IC+  +  L
Sbjct  176  DKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVEL  235

Query  247  KILPGVYQMVDGEINVNSIRNVDVLDLLGRDPIEVDIESIMGYVKDKVIMVTGGGGSIGS  306
              +P + +++ GE++VN++++V+V DLLGRDP+E+D+  I   + +K I+VTG+GGSIGS
Sbjct  236  FKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGS  295

Query  307  ELCRQLVSHKPKQLIIFDIYENNAYDIQQELKINYPD-ANVVTLIGSIRNVSRLESVFAQ  365
            E+CRQ+    P+++I+++  EN+ Y I+QEL   Y +  + V +I+ ++N +R+  V  +
Sbjct  296  EICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNE  355

Query  366  YKPDIVYHAAAHKHVPLMEVSPDEAVKNNVVGTWNVARMADKYGVKKFVMISTDKAVNPT  425
            +KP  VYHAAAHKHVPLME +P+EA++NN++GT NVA  A    V KFVMISTDKAVNP+
Sbjct  356  FKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPS  415

Query  426  NVMGATKRICEMIVQTYN-GISKTDFVAVRFGNVLGSNGSVIPLFKRQIEAGGPVTVTDP  484
            NVMGATKRI EM++Q+ N + SKT FVAVRFGNVLGS GSVIPLFK QIE+GGPVTVT+P
Sbjct  416  NVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHP  475

Query  485  NIIRYFMTIPEAVSLVLQAGAYAKGGEIFILDMGEPVKIDDLAKNLIRLSGYTLGVDMEI  544
            ++ RYFMTIPEA  LVLQAGA A+GGE+F+LDMG PVKI DLAKNLIRLSG     D+ I
Sbjct  476  EMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIGI  534

Query  545  KYTGLRP  551
             ++G+RP
Sbjct  535  EFSGIRP  541

318) wbpM in NC_011770


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  310 bits (1162),  Expect = 1e-85, Method: Compositional matrix adjust.
 Identities = 221/528 (42%), Positives = 346/528 (66%), Gaps = 57/528 (10%)

Query  118  LVFNYWWLSMLLIGGLRL---AMRQYFMGDWYSAVQSVPFLNRQDGLPRVAIYGAGAAGN  174
            L F  W + +LLIGG RL     R+YF+++          ++++  L    + GAG +G+
Sbjct  107  LYFITWMMHLLLIGGSRLFWRVYRRYFIDNA---------VEKKATL----VVGAGQGGS  153

Query  175  QLVAALRLGRAMR--PVAFIDDDKQIANRVIAG---LRVYTAKHIRQMIDETGAQEVLLA  229
             L+  +  ++ MR  PV  +DDDK+  +  I+    ++ Y   +I +++     + +++A
Sbjct  154  VLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVE-DIPELVKKFRIKKIIIA  212

Query  230  IPSATRARRREI-----LESLEPFPLHVRSMPGFMDLASGRVKVDDLQEVDIADLLGRDS  284
            IP+ ++ R  EI     +E++E F      MP + D+ SG + V++L+ V++ DLLGRD+
Sbjct  213  IPTLSQKRLNEINKICNIEGVELF-----KMPNIEDVLSGELEVNNLKKVEVEDLLGRDP  267

Query  285  VAPRKELLERCIRGQVVMVTGAGGSIGSELCRQIMSCSPSVLILFEHSEYNLYSIHQELE  344
            V     L+ R +  + ++VTGAGGSIGSE+CRQ+    P  +IL+ H+E ++YSIHQEL 
Sbjct  268  VELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELS  327

Query  345  RRIKRESLSVNLLPILGSVRNPERLVDVMRTWKVNTVYHAAAYKHVPIVEHNIAEGVLNN  404
            +        ++++P+++ V+N  R+++VM   K  +VYHAAA KHVP++E N  E++ NN
Sbjct  328  KTYGN---RIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNN  384

Query  405  VIGTLHavqaavqvgvqNFVLISTDKAVRPTNVMGSTKRLAEMVLQALSNESAPVLFGDR  464
            ++GT +  ++A +  V +FV+ISTDKAV P+NVMG+TKR+AEMV+Q+L+++++       
Sbjct  385  ILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNS-------  437

Query  465  KDVHHVNKTRFTMVRFGNVLGSSGSVIPLFREQIKRGGPVTVTHPSITRYFMTIPEAAQL  524
                   KT F  VRFGNVLGS GSVIPLF++QI  GGPVTVTHP +TRYFMTIPEA++L
Sbjct  438  -------KTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRL  490

Query  525  VIQAGSMGQGGDVFVLDMGPPVKILELAEKMIHLSGLSVRSERSPHGDIAIEFSGLRPGE  584
            V+QAG+++QGG+VFVLDMG PVKI++LA ++I+LSG         + DI+IEFSG+RPGE
Sbjct  491  VLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-------KKEEDIGIEFSGIRPGE  543

Query  585  KLYEELLIGDNVNPTD-HPMIMRANEEHLSWEAFKVVLEQLLAAVEKD  631
            KLYEELL  ++++P +    I R++ +H       +++E+L+    K+
Sbjct  544  KLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSKE  591

319) wbpM in NC_002516


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  310 bits (1161),  Expect = 2e-85, Method: Compositional matrix adjust.
 Identities = 221/528 (42%), Positives = 346/528 (66%), Gaps = 57/528 (10%)

Query  118  LVFNYWWLSMLLIGGLRL---AMRQYFMGDWYSAVQSVPFLNRQDGLPRVAIYGAGAAGN  174
            L F  W + +LLIGG RL     R+YF+++          ++++  L    + GAG +G+
Sbjct  107  LYFITWMMHLLLIGGSRLFWRVYRRYFIDNA---------VEKKATL----VVGAGQGGS  153

Query  175  QLVAALRLGRAMR--PVAFIDDDKQIANRVIAG---LRVYTAKHIRQMIDETGAQEVLLA  229
             L+  +  ++ MR  PV  +DDDK+  +  I+    ++ Y   +I +++     + +++A
Sbjct  154  VLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVE-DIPELVKKFRIKKIIIA  212

Query  230  IPSATRARRREI-----LESLEPFPLHVRSMPGFMDLASGRVKVDDLQEVDIADLLGRDS  284
            IP+ ++ R  EI     +E++E F      MP + D+ SG + V++L+ V++ DLLGRD+
Sbjct  213  IPTLSQKRLNEINKICNIEGVELF-----KMPNIEDVLSGELEVNNLKKVEVEDLLGRDP  267

Query  285  VAPRKELLERCIRGQVVMVTGAGGSIGSELCRQIMSCSPSVLILFEHSEYNLYSIHQELE  344
            V     L+ R +  + ++VTGAGGSIGSE+CRQ+    P  +IL+ H+E ++YSIHQEL 
Sbjct  268  VELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELS  327

Query  345  RRIKRESLSVNLLPILGSVRNPERLVDVMRTWKVNTVYHAAAYKHVPIVEHNIAEGVLNN  404
            +        ++++P+++ V+N  R+++VM   K  +VYHAAA KHVP++E N  E++ NN
Sbjct  328  KTYGN---RIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNN  384

Query  405  VIGTLHavqaavqvgvqNFVLISTDKAVRPTNVMGSTKRLAEMVLQALSNESAPVLFGDR  464
            ++GT +  ++A +  V +FV+ISTDKAV P+NVMG+TKR+AEMV+Q+L+++++       
Sbjct  385  ILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNS-------  437

Query  465  KDVHHVNKTRFTMVRFGNVLGSSGSVIPLFREQIKRGGPVTVTHPSITRYFMTIPEAAQL  524
                   KT F  VRFGNVLGS GSVIPLF++QI  GGPVTVTHP +TRYFMTIPEA++L
Sbjct  438  -------KTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRL  490

Query  525  VIQAGSMGQGGDVFVLDMGPPVKILELAEKMIHLSGLSVRSERSPHGDIAIEFSGLRPGE  584
            V+QAG+++QGG+VFVLDMG PVKI++LA ++I+LSG         + DI+IEFSG+RPGE
Sbjct  491  VLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-------KKEEDIGIEFSGIRPGE  543

Query  585  KLYEELLIGDNVNPTD-HPMIMRANEEHLSWEAFKVVLEQLLAAVEKD  631
            KLYEELL  ++++P +    I R++ +H       +++E+L+    K+
Sbjct  544  KLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSKE  591

320) B565_2775 in NC_015424


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  309 bits (1160),  Expect = 2e-85, Method: Compositional matrix adjust.
 Identities = 216/465 (47%), Positives = 327/465 (71%), Gaps = 30/465 (6%)

Query  17   IYFA---FSVLLIGGVRLFFRA----LVQRSAQQRVAVLIYGAGSSGRQLQLALNQGQEY  69
            +YF      +LLIGG RLF R     +++ + +++ ++++ GAG +G  L   + ++Q+ 
Sbjct  107  LYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEKKATLVV-GAGQGGSVLIREMLRSQDM  165

Query  70   --LPVAFVDDDPALVKTVIQG---VNVYSTDAIEALIERFDIKKILLAMPSASRSVRQAV  124
               PV  VDDD    K  I     V+ Y  + I  L+ +F IKKI++A+P+ S+  R   
Sbjct  166  RMQPVLAVDDDKNKQKMTITERVKVQGY-VEDIPELVKKFRIKKIIIAIPTLSQK-RLNE  223

Query  125  INRLEQCP---CEVLSIPGMADLVEGNAHIDELKEVSIEDLLGRDAVAPIPELINANICG  181
            IN++  C     E++ +P + D++ G+ ++++LK V +EDLLGRD+V     LI+ ++  
Sbjct  224  INKI--CNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTN  281

Query  182  KRVMVTGAGGSIGSELCRQIIRCKPTQLVLFELSEYGLYAIDKELQEISYHEGLQVEIVP  241
            K ++VTGAGGSIGSE+CRQ+ +  P +++L+  +E ++Y+I++EL   +Y  G ++E+VP
Sbjct  282  KTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSK-TY--GNRIEFVP  338

Query  242  LLGSVQRQHRVQAVMSTFKIQTVYHAAAYKHVPLVEYNVVEGVRNNVFGTLYCAQAAIRA  301
            +++ VQ + R+  VM+ FK  +VYHAAA KHVPL+EYN  E++RNN++GT   A++A  +
Sbjct  339  VIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEG  398

Query  302  KVETFVLISTDKAVRPTNTMGTTKRLAELVLQSLAAAQRQTRFCMVRFGNVLGSSGSVVP  361
             V  FV+ISTDKAV P+N MG+TKR+AE+V+QSL   + +T F  VRFGNVLGS GSV+P
Sbjct  399  EVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIP  458

Query  362  LFRKQIRDGGPLTLTHPDIIRYFMTIPEASQLVIQAGAMGQGGDVFVLDMGEPVKIIDLA  421
            LF++QI  GGP+T+THP++ RYFMTIPEAS+LV+QAGA++QGG+VFVLDMG PVKI+DLA
Sbjct  459  LFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLA  518

Query  422  HRMIRLSGLKLKSEQHPTGDIEVKITGLRPGEKLFEELLIGEQVE  466
              +IRLSG   K E+    DI + ++G+RPGEKL+EELL  ++++
Sbjct  519  KNLIRLSG---KKEE----DIGIEFSGIRPGEKLYEELLNKNEIH  556

321) CAP2UW1_0118 in NC_013194


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  309 bits (1160),  Expect = 2e-85, Method: Compositional matrix adjust.
 Identities = 204/459 (45%), Positives = 332/459 (73%), Gaps = 24/459 (5%)

Query  116  MLAILYVGTARFL---ARSYFLRAERAEDSRKRVAIYGAGSAGTQLAYALRAGREY--LP  170
            M+ +L +G +R++    R YF+  + A + +  + + GAG +G+ L   +  +++    P
Sbjct  113  MMHLLLIGGSRLFWRVYRRYFI--DNAVEKKATLVV-GAGQGGSVLIREMLRSQDMRMQP  169

Query  171  VAFVDDNAALQRIEVAG-LRVQS-PDQLMPMMAAGRIEEVLLAIPSASRSRRAEI--IGS  226
            V  VDD+   Q++ ++  ++VQ+  +++  ++   RI  +++AIP+ S+ R  EI  I +
Sbjct  170  VLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICN  229

Query  227  LEGLHCKVRLVPGMADVVSGNVTADAIREVEIEDLLGRESVAPDAALLGRCVTGKVVMVS  286
            +EG++  +  +P + DV+SG++  + ++ VE+EDLLGR++V  D AL++R +T K ++V+
Sbjct  230  IEGVE--LFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVT  287

Query  287  GAGGSIGAELCRQIVQLRPSRLVLMERSEFALYSIEQELATLCVGGSACVELVPVLGSVL  346
            GAGGSIG+E+CRQ+ ++ P +++L+ ++E ++YSI+QEL+      +  +E+VPV++ V 
Sbjct  288  GAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTY---GNRIEFVPVIADVQ  344

Query  347  HQKRNEMVMKSFGVQTVYHAAAYKHVPLVEHNPIEGLRNNAVGTRRMAEAALAAGVGTFV  406
            ++ R   VM+ F   +VYHAAA KHVPL+E NP E++RNN +GT+ +AE+A  + V+ FV
Sbjct  345  NKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFV  404

Query  407  LISTDKAVRPTNVMGASKRLAELILQALARSGGGTRFCMVRFGNVLGSSGSVVPLFRRQI  466
            +ISTDKAV P+NVMGA+KR+AE+++Q+L    + T F  VRFGNVLGS GSV+PLF+ QI
Sbjct  405  MISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQI  464

Query  467  AAGGPITLTHAEITRYFMTIPEAAQLVIQAGSMGEGGEVYVLDMGKPVRIIDLARRMVHL  526
             +GGP+T+TH+E+TRYFMTIPEA++LV+QAG++++GGEV+VLDMGKPV+I+DLA+ +++L
Sbjct  465  ESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRL  524

Query  527  SGLEVRDEEHPDGDIAIEVVGLRPGEKLYEELLIGENVE  565
            SG         + DI+IE  G+RPGEKLYEELL  ++++
Sbjct  525  SG-------KKEEDIGIEFSGIRPGEKLYEELLNKNEIH  556

322) G655_09090 in NC_020912


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  309 bits (1159),  Expect = 2e-85, Method: Compositional matrix adjust.
 Identities = 223/528 (43%), Positives = 347/528 (66%), Gaps = 57/528 (10%)

Query  73   LVFNYWWLSMLLIGGLRL---AMRQYFMGDWYSAVQSVPFLNRQDGLPRVAIYGAGAAGN  129
            L F  W + +LLIGG RL     R+YF+++   AV+      ++  L    + GAG +G+
Sbjct  107  LYFITWMMHLLLIGGSRLFWRVYRRYFIDN---AVE------KKATL----VVGAGQGGS  153

Query  130  QLVAALRLGRAMR--PVAFIDDDKQIANRVIAG---LRVYTAKHIRQMIDETGAQEVLLA  184
             L+  +  ++ MR  PV  +DDDK+  +  I+    ++ Y   +I +++     + +++A
Sbjct  154  VLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVE-DIPELVKKFRIKKIIIA  212

Query  185  IPSATRARRREI-----LESLEPFPLHVRSMPGFMDLASGRVKVDDLQEVDIADLLGRDS  239
            IP+ ++ R  EI     +E++E F      MP + D+ SG + V++L+ V++ DLLGRD+
Sbjct  213  IPTLSQKRLNEINKICNIEGVELF-----KMPNIEDVLSGELEVNNLKKVEVEDLLGRDP  267

Query  240  VAPRKELLERCIRGQVVMVTGAGGSIGSELCRQIMSCSPSVLILFEHSEYNLYSIHQELE  299
            V     L+ R +  + ++VTGAGGSIGSE+CRQ+    P  +IL+ H+E ++YSIHQEL 
Sbjct  268  VELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELS  327

Query  300  RRIKRESLSVNLLPILGSVRNPERLVDVMRTWKVNTVYHAAAYKHVPIVEHNIAEGVLNN  359
            +        ++++P+++ V+N  R+++VM   K  +VYHAAA KHVP++E N  E++ NN
Sbjct  328  KTYGN---RIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNN  384

Query  360  VIGTLHavqaavqvgvqNFVLISTDKAVRPTNVMGSTKRLAEMVLQALSNESAPVLFGDR  419
            ++GT +  ++A +  V +FV+ISTDKAV P+NVMG+TKR+AEMV+Q+L+++++       
Sbjct  385  ILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNS-------  437

Query  420  KDVHHVNKTRFTMVRFGNVLGSSGSVIPLFREQIKRGGPVTVTHPSITRYFMTIPEAAQL  479
                   KT F  VRFGNVLGS GSVIPLF++QI  GGPVTVTHP +TRYFMTIPEA++L
Sbjct  438  -------KTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRL  490

Query  480  VIQAGSMGQGGDVFVLDMGPPVKILELAEKMIHLSGLSVRSERSPHGDIAIEFSGLRPGE  539
            V+QAG+++QGG+VFVLDMG PVKI++LA ++I+LSG         + DI+IEFSG+RPGE
Sbjct  491  VLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-------KKEEDIGIEFSGIRPGE  543

Query  540  KLYEELLIGDNVNPTD-HPMIMRANEEHLSWEAFKVVLEQLLAAVEKD  586
            KLYEELL  ++++P +    I R++ +H       +++E+L+    K+
Sbjct  544  KLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSKE  591

323) wbpM in NC_017549


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  309 bits (1159),  Expect = 2e-85, Method: Compositional matrix adjust.
 Identities = 223/528 (43%), Positives = 347/528 (66%), Gaps = 57/528 (10%)

Query  73   LVFNYWWLSMLLIGGLRL---AMRQYFMGDWYSAVQSVPFLNRQDGLPRVAIYGAGAAGN  129
            L F  W + +LLIGG RL     R+YF+++   AV+      ++  L    + GAG +G+
Sbjct  107  LYFITWMMHLLLIGGSRLFWRVYRRYFIDN---AVE------KKATL----VVGAGQGGS  153

Query  130  QLVAALRLGRAMR--PVAFIDDDKQIANRVIAG---LRVYTAKHIRQMIDETGAQEVLLA  184
             L+  +  ++ MR  PV  +DDDK+  +  I+    ++ Y   +I +++     + +++A
Sbjct  154  VLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVE-DIPELVKKFRIKKIIIA  212

Query  185  IPSATRARRREI-----LESLEPFPLHVRSMPGFMDLASGRVKVDDLQEVDIADLLGRDS  239
            IP+ ++ R  EI     +E++E F      MP + D+ SG + V++L+ V++ DLLGRD+
Sbjct  213  IPTLSQKRLNEINKICNIEGVELF-----KMPNIEDVLSGELEVNNLKKVEVEDLLGRDP  267

Query  240  VAPRKELLERCIRGQVVMVTGAGGSIGSELCRQIMSCSPSVLILFEHSEYNLYSIHQELE  299
            V     L+ R +  + ++VTGAGGSIGSE+CRQ+    P  +IL+ H+E ++YSIHQEL 
Sbjct  268  VELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELS  327

Query  300  RRIKRESLSVNLLPILGSVRNPERLVDVMRTWKVNTVYHAAAYKHVPIVEHNIAEGVLNN  359
            +        ++++P+++ V+N  R+++VM   K  +VYHAAA KHVP++E N  E++ NN
Sbjct  328  KTYGN---RIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNN  384

Query  360  VIGTLHavqaavqvgvqNFVLISTDKAVRPTNVMGSTKRLAEMVLQALSNESAPVLFGDR  419
            ++GT +  ++A +  V +FV+ISTDKAV P+NVMG+TKR+AEMV+Q+L+++++       
Sbjct  385  ILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNS-------  437

Query  420  KDVHHVNKTRFTMVRFGNVLGSSGSVIPLFREQIKRGGPVTVTHPSITRYFMTIPEAAQL  479
                   KT F  VRFGNVLGS GSVIPLF++QI  GGPVTVTHP +TRYFMTIPEA++L
Sbjct  438  -------KTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRL  490

Query  480  VIQAGSMGQGGDVFVLDMGPPVKILELAEKMIHLSGLSVRSERSPHGDIAIEFSGLRPGE  539
            V+QAG+++QGG+VFVLDMG PVKI++LA ++I+LSG         + DI+IEFSG+RPGE
Sbjct  491  VLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-------KKEEDIGIEFSGIRPGE  543

Query  540  KLYEELLIGDNVNPTD-HPMIMRANEEHLSWEAFKVVLEQLLAAVEKD  586
            KLYEELL  ++++P +    I R++ +H       +++E+L+    K+
Sbjct  544  KLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSKE  591

324) PADK2_08625 in NC_018080


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  309 bits (1160),  Expect = 2e-85, Method: Compositional matrix adjust.
 Identities = 221/528 (42%), Positives = 346/528 (66%), Gaps = 57/528 (10%)

Query  117  LVFNYWWLSMLLIGGLRL---AMRQYFMGDWYSAVQSVPFLNRQDGLPRVAIYGAGAAGN  173
            L F  W + +LLIGG RL     R+YF+++          ++++  L    + GAG +G+
Sbjct  107  LYFITWMMHLLLIGGSRLFWRVYRRYFIDNA---------VEKKATL----VVGAGQGGS  153

Query  174  QLVAALRLGRAMR--PVAFIDDDKQIANRVIAG---LRVYTAKHIRQMIDETGAQEVLLA  228
             L+  +  ++ MR  PV  +DDDK+  +  I+    ++ Y   +I +++     + +++A
Sbjct  154  VLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVE-DIPELVKKFRIKKIIIA  212

Query  229  IPSATRARRREI-----LESLEPFPLHVRSMPGFMDLASGRVKVDDLQEVDIADLLGRDS  283
            IP+ ++ R  EI     +E++E F      MP + D+ SG + V++L+ V++ DLLGRD+
Sbjct  213  IPTLSQKRLNEINKICNIEGVELF-----KMPNIEDVLSGELEVNNLKKVEVEDLLGRDP  267

Query  284  VAPRKELLERCIRGQVVMVTGAGGSIGSELCRQIMSCSPSVLILFEHSEYNLYSIHQELE  343
            V     L+ R +  + ++VTGAGGSIGSE+CRQ+    P  +IL+ H+E ++YSIHQEL 
Sbjct  268  VELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELS  327

Query  344  RRIKRESLSVNLLPILGSVRNPERLVDVMRTWKVNTVYHAAAYKHVPIVEHNIAEGVLNN  403
            +        ++++P+++ V+N  R+++VM   K  +VYHAAA KHVP++E N  E++ NN
Sbjct  328  KTYGN---RIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNN  384

Query  404  VIGTLHavqaavqvgvqNFVLISTDKAVRPTNVMGSTKRLAEMVLQALSNESAPVLFGDR  463
            ++GT +  ++A +  V +FV+ISTDKAV P+NVMG+TKR+AEMV+Q+L+++++       
Sbjct  385  ILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNS-------  437

Query  464  KDVHHVNKTRFTMVRFGNVLGSSGSVIPLFREQIKRGGPVTVTHPSITRYFMTIPEAAQL  523
                   KT F  VRFGNVLGS GSVIPLF++QI  GGPVTVTHP +TRYFMTIPEA++L
Sbjct  438  -------KTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRL  490

Query  524  VIQAGSMGQGGDVFVLDMGPPVKILELAEKMIHLSGLSVRSERSPHGDIAIEFSGLRPGE  583
            V+QAG+++QGG+VFVLDMG PVKI++LA ++I+LSG         + DI+IEFSG+RPGE
Sbjct  491  VLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-------KKEEDIGIEFSGIRPGE  543

Query  584  KLYEELLIGDNVNPTD-HPMIMRANEEHLSWEAFKVVLEQLLAAVEKD  630
            KLYEELL  ++++P +    I R++ +H       +++E+L+    K+
Sbjct  544  KLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSKE  591

325) wbpM in NC_017548


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  309 bits (1160),  Expect = 2e-85, Method: Compositional matrix adjust.
 Identities = 221/528 (42%), Positives = 346/528 (66%), Gaps = 57/528 (10%)

Query  107  LVFNYWWLSMLLIGGLRL---AMRQYFMGDWYSAVQSVPFLNRQDGLPRVAIYGAGAAGN  163
            L F  W + +LLIGG RL     R+YF+++          ++++  L    + GAG +G+
Sbjct  107  LYFITWMMHLLLIGGSRLFWRVYRRYFIDNA---------VEKKATL----VVGAGQGGS  153

Query  164  QLVAALRLGRAMR--PVAFIDDDKQIANRVIAG---LRVYTAKHIRQMIDETGAQEVLLA  218
             L+  +  ++ MR  PV  +DDDK+  +  I+    ++ Y   +I +++     + +++A
Sbjct  154  VLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVE-DIPELVKKFRIKKIIIA  212

Query  219  IPSATRARRREI-----LESLEPFPLHVRSMPGFMDLASGRVKVDDLQEVDIADLLGRDS  273
            IP+ ++ R  EI     +E++E F      MP + D+ SG + V++L+ V++ DLLGRD+
Sbjct  213  IPTLSQKRLNEINKICNIEGVELF-----KMPNIEDVLSGELEVNNLKKVEVEDLLGRDP  267

Query  274  VAPRKELLERCIRGQVVMVTGAGGSIGSELCRQIMSCSPSVLILFEHSEYNLYSIHQELE  333
            V     L+ R +  + ++VTGAGGSIGSE+CRQ+    P  +IL+ H+E ++YSIHQEL 
Sbjct  268  VELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELS  327

Query  334  RRIKRESLSVNLLPILGSVRNPERLVDVMRTWKVNTVYHAAAYKHVPIVEHNIAEGVLNN  393
            +        ++++P+++ V+N  R+++VM   K  +VYHAAA KHVP++E N  E++ NN
Sbjct  328  KTYGN---RIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNN  384

Query  394  VIGTLHavqaavqvgvqNFVLISTDKAVRPTNVMGSTKRLAEMVLQALSNESAPVLFGDR  453
            ++GT +  ++A +  V +FV+ISTDKAV P+NVMG+TKR+AEMV+Q+L+++++       
Sbjct  385  ILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNS-------  437

Query  454  KDVHHVNKTRFTMVRFGNVLGSSGSVIPLFREQIKRGGPVTVTHPSITRYFMTIPEAAQL  513
                   KT F  VRFGNVLGS GSVIPLF++QI  GGPVTVTHP +TRYFMTIPEA++L
Sbjct  438  -------KTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRL  490

Query  514  VIQAGSMGQGGDVFVLDMGPPVKILELAEKMIHLSGLSVRSERSPHGDIAIEFSGLRPGE  573
            V+QAG+++QGG+VFVLDMG PVKI++LA ++I+LSG         + DI+IEFSG+RPGE
Sbjct  491  VLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-------KKEEDIGIEFSGIRPGE  543

Query  574  KLYEELLIGDNVNPTD-HPMIMRANEEHLSWEAFKVVLEQLLAAVEKD  620
            KLYEELL  ++++P +    I R++ +H       +++E+L+    K+
Sbjct  544  KLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSKE  591

326) M062_16805 in NC_021577


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  309 bits (1160),  Expect = 2e-85, Method: Compositional matrix adjust.
 Identities = 221/528 (42%), Positives = 346/528 (66%), Gaps = 57/528 (10%)

Query  118  LVFNYWWLSMLLIGGLRL---AMRQYFMGDWYSAVQSVPFLNRQDGLPRVAIYGAGAAGN  174
            L F  W + +LLIGG RL     R+YF+++          ++++  L    + GAG +G+
Sbjct  107  LYFITWMMHLLLIGGSRLFWRVYRRYFIDNA---------VEKKATL----VVGAGQGGS  153

Query  175  QLVAALRLGRAMR--PVAFIDDDKQIANRVIAG---LRVYTAKHIRQMIDETGAQEVLLA  229
             L+  +  ++ MR  PV  +DDDK+  +  I+    ++ Y   +I +++     + +++A
Sbjct  154  VLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVE-DIPELVKKFRIKKIIIA  212

Query  230  IPSATRARRREI-----LESLEPFPLHVRSMPGFMDLASGRVKVDDLQEVDIADLLGRDS  284
            IP+ ++ R  EI     +E++E F      MP + D+ SG + V++L+ V++ DLLGRD+
Sbjct  213  IPTLSQKRLNEINKICNIEGVELF-----KMPNIEDVLSGELEVNNLKKVEVEDLLGRDP  267

Query  285  VAPRKELLERCIRGQVVMVTGAGGSIGSELCRQIMSCSPSVLILFEHSEYNLYSIHQELE  344
            V     L+ R +  + ++VTGAGGSIGSE+CRQ+    P  +IL+ H+E ++YSIHQEL 
Sbjct  268  VELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELS  327

Query  345  RRIKRESLSVNLLPILGSVRNPERLVDVMRTWKVNTVYHAAAYKHVPIVEHNIAEGVLNN  404
            +        ++++P+++ V+N  R+++VM   K  +VYHAAA KHVP++E N  E++ NN
Sbjct  328  KTYGN---RIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNN  384

Query  405  VIGTLHavqaavqvgvqNFVLISTDKAVRPTNVMGSTKRLAEMVLQALSNESAPVLFGDR  464
            ++GT +  ++A +  V +FV+ISTDKAV P+NVMG+TKR+AEMV+Q+L+++++       
Sbjct  385  ILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNS-------  437

Query  465  KDVHHVNKTRFTMVRFGNVLGSSGSVIPLFREQIKRGGPVTVTHPSITRYFMTIPEAAQL  524
                   KT F  VRFGNVLGS GSVIPLF++QI  GGPVTVTHP +TRYFMTIPEA++L
Sbjct  438  -------KTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRL  490

Query  525  VIQAGSMGQGGDVFVLDMGPPVKILELAEKMIHLSGLSVRSERSPHGDIAIEFSGLRPGE  584
            V+QAG+++QGG+VFVLDMG PVKI++LA ++I+LSG         + DI+IEFSG+RPGE
Sbjct  491  VLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-------KKEEDIGIEFSGIRPGE  543

Query  585  KLYEELLIGDNVNPTD-HPMIMRANEEHLSWEAFKVVLEQLLAAVEKD  631
            KLYEELL  ++++P +    I R++ +H       +++E+L+    K+
Sbjct  544  KLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSKE  591

327) wbpM in NC_008463


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  309 bits (1159),  Expect = 2e-85, Method: Compositional matrix adjust.
 Identities = 221/528 (42%), Positives = 346/528 (66%), Gaps = 57/528 (10%)

Query  118  LVFNYWWLSMLLIGGLRL---AMRQYFMGDWYSAVQSVPFLNRQDGLPRVVIYGAGAAGN  174
            L F  W + +LLIGG RL     R+YF+++          ++++  L    + GAG +G+
Sbjct  107  LYFITWMMHLLLIGGSRLFWRVYRRYFIDNA---------VEKKATL----VVGAGQGGS  153

Query  175  QLVAALRLGRAMR--PVAFIDDDKQIANRVIAG---LRVYTAKHIRQMIDETGAQEVLLA  229
             L+  +  ++ MR  PV  +DDDK+  +  I+    ++ Y   +I +++     + +++A
Sbjct  154  VLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVE-DIPELVKKFRIKKIIIA  212

Query  230  IPSATRARRREI-----LESLEPFPLHVRSMPGFMDLASGRVKVDDLQEVDIADLLGRDS  284
            IP+ ++ R  EI     +E++E F      MP + D+ SG + V++L+ V++ DLLGRD+
Sbjct  213  IPTLSQKRLNEINKICNIEGVELF-----KMPNIEDVLSGELEVNNLKKVEVEDLLGRDP  267

Query  285  VAPRKELLERCIRGQVVMVTGAGGSIGSELCRQIMSCSPSVLILFEHSEYNLYSIHQELE  344
            V     L+ R +  + ++VTGAGGSIGSE+CRQ+    P  +IL+ H+E ++YSIHQEL 
Sbjct  268  VELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELS  327

Query  345  RRIKRESLSVNLLPILGSVRNPERLVDVMRTWKVNTVYHAAAYKHVPIVEHNIAEGVLNN  404
            +        ++++P+++ V+N  R+++VM   K  +VYHAAA KHVP++E N  E++ NN
Sbjct  328  KTYGN---RIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNN  384

Query  405  VIGTLHavqaavqvgvqNFVLISTDKAVRPTNVMGSTKRLAEMVLQALSNESAPVLFGDR  464
            ++GT +  ++A +  V +FV+ISTDKAV P+NVMG+TKR+AEMV+Q+L+++++       
Sbjct  385  ILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNS-------  437

Query  465  KDVHHVNKTRFTMVRFGNVLGSSGSVIPLFREQIKRGGPVTVTHPSITRYFMTIPEAAQL  524
                   KT F  VRFGNVLGS GSVIPLF++QI  GGPVTVTHP +TRYFMTIPEA++L
Sbjct  438  -------KTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRL  490

Query  525  VIQAGSMGQGGDVFVLDMGPPVKILELAEKMIHLSGLSVRSERSPHGDIAIEFSGLRPGE  584
            V+QAG+++QGG+VFVLDMG PVKI++LA ++I+LSG         + DI+IEFSG+RPGE
Sbjct  491  VLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-------KKEEDIGIEFSGIRPGE  543

Query  585  KLYEELLIGDNVNPTD-HPMIMRANEEHLSWEAFKVVLEQLLAAVEKD  631
            KLYEELL  ++++P +    I R++ +H       +++E+L+    K+
Sbjct  544  KLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSKE  591

328) CV_4115 in NC_005085


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  308 bits (1155),  Expect = 5e-85, Method: Compositional matrix adjust.
 Identities = 210/483 (44%), Positives = 332/483 (69%), Gaps = 13/483 (2%)

Query  116  WVFAMAYIGGSRFLLRGLVRRIDATEAPRDPVIIYGAGQAGVQLMLALQAGREYR--PMA  173
            W+  +  IGGSR++ R   R +      + + ++ GAGQ+G  L+  +  +++ R  P+ 
Sbjct  112  WMMHLLLIGGSRLFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVL  171

Query  174  FVDDNPDLRRRTYRG-VAVHA-PEELPALIKDTQAKCILLAMPSVGRGRQREILESLEKL  231
             VDD+ + ++ T    V V++  E++P L+K  + K I++A+P++++ R  EI    +  
Sbjct  172  AVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIE  231

Query  232  RVPIKRLPGMADLVSGEARVEELKEVEIEDLLGREPVPPKTELLARNIRDKVVMVTGAGG  291
             V + ++P + D++SGE  V++LK VE+EDLLGR+PV     L++R++ +K ++VTGAGG
Sbjct  232  GVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGG  291

Query  292  SIGSELARQIVRNRPARIVLFELSEFALYSIDQELAQI-APRIPRTPILGSVTDYARLTQ  350
            SIGSE+ RQ+ +  P +I+L+  +E ++YSI+QEL++  + RI   P+++ V + +R+ +
Sbjct  292  SIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILE  351

Query  351  VMRAFQVETVYHAAAYKHVPMVEHNPVAGIVNNAFGTDTTARAAEDCGVDTFVLISTDKA  410
            VM  F+  +VYHAAA KHVP++E NP  +I NN +GT   A +A +  V  FV+ISTDKA
Sbjct  352  VMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKA  411

Query  411  VRPTNVMGATKRLAELTLQTRHARGSRTRFVMVRFGNVLGSSGSVVPLFRRQIKAGGPIT  470
            V P+NVMGATKR+AE+ +Q+ +   S+T FV VRFGNVLGS GSV+PLF+ QI +GGP+T
Sbjct  412  VNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVT  471

Query  471  LTHADITRYFMTIPEAAQLVIQAGAMGDGGDVFVLDMGEPVKIIELARRMVHLSGLEVKD  530
            +TH+++TRYFMTIPEA++LV+QAGA+++GG+VFVLDMG PVKI++LA+ +++LSG     
Sbjct  472  VTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-----  526

Query  531  ENQPGGDIEIRVTGLRPGEKLYEELLIGDNVLPTD-HARIMRAQEYHLTEEEMASLLARL  589
              +   DI I  +G+RPGEKLYEELL  +++ P +   +I R++  H    E+  ++  L
Sbjct  527  --KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDL  584

Query  590  ADA  592
             + 
Sbjct  585  INN  587

329) wbpM in NC_015856


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  308 bits (1154),  Expect = 6e-85, Method: Compositional matrix adjust.
 Identities = 220/466 (48%), Positives = 336/466 (73%), Gaps = 27/466 (5%)

Query  115  WVSAILYVAASRFLARGYLLR---VSGIVGVVPVAIYGAGQAGTQLASA-LRAGNEYL-P  169
            W+  +L +++SR++ R Y  R   +   V   +  + GAGQ+G+ L    LR+ +  + P
Sbjct  112  WMMHLLLIGGSRLFWRVY--RRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQP  169

Query  170  VAFIDDKKELQKATIAG-IKVFD-AEDLPNLIARYKVKEILLAMPSLS--KLQQKHILDK  225
            V  +DD K+ QK TI+  +KV +  ED+P+L+ ++++K I++A+P+LS  +L++ + + +
Sbjct  170  VLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICN  229

Query  226  LEPLKVKIKVTPPIKSLINGELRVQDIREVEIEDLLGRDPVEPNPELISACIVDKSVMVT  285
            +E + + +K+ P I  +++GEL V++++ VE+EDLLGRDPVE +  LIS  + +K+++VT
Sbjct  230  IEGVEL-FKM-PNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVT  287

Query  286  GAGGSIGSELCRQIIRQRPSRLILLEMSEYGLYAIEQELSELQRNIGFNIELLPFLGSVL  345
            GAGGSIGSE+CRQ+ +  P ++ILL  +E ++Y+I+QELS   +  G  IE++P ++ V 
Sbjct  288  GAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELS---KTYGNRIEFVPVIADVQ  344

Query  346  ETEKCARIMRTFSVETVYHAAAYKHVPLVEHNPIEGIRNNVFGTLSVAKAAMASGVKSFV  405
            +  +   +M  F   +VYHAAA KHVPL+E NP E+IRNN++GT +VA +A  + V  FV
Sbjct  345  NKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFV  404

Query  406  LISTDKAVRPTNVMGSTKRFAELILQAFSRVQGKSPSKTRFCMVRFGNVLGSSGSVVPLF  465
            +ISTDKAV P+NVMG+TKR+AE+++Q+++       SKT F  VRFGNVLGS GSV+PLF
Sbjct  405  MISTDKAVNPSNVMGATKRIAEMVIQSLN----EDNSKTSFVAVRFGNVLGSRGSVIPLF  460

Query  466  RKQIMAGGPITLTHPEITRYFMTIPEAAQLVLQAGAMGQGGDVFVLDMGEPVKIIDLAKR  525
            ++QI +GGP+T+THPE+TRYFMTIPEA++LVLQAGA++QGG+VFVLDMG PVKI+DLAK 
Sbjct  461  KNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKN  520

Query  526  MVHLSGLEVLSDLTPDGTIEINHVGLRPGEKLYEELLIGENVEGTE  571
            +++LSG         +  I I+  G+RPGEKLYEELL  ++++  +
Sbjct  521  LIRLSG-------KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQ  559

330) Rpic12D_0577 in NC_012856


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  308 bits (1154),  Expect = 6e-85, Method: Compositional matrix adjust.
 Identities = 204/454 (45%), Positives = 324/454 (72%), Gaps = 14/454 (3%)

Query  116  WLLAIFYIVCSRFFARAAFRMLPGFHRQRQKVIIYGAGEAGRQLAVALRAGPDY--DPIG  173
            W++ ++ I  SR+F R   R + +   +++  ++ GAG++G  L   +  + D   +P+ 
Sbjct  112  WMMHLLLIGGSRLFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVL  171

Query  174  FVDDDPAKVKLNIGG-ISVHQ-AEQLPALIKDLGVSQVLLAIPSASRGRRIEIVNALEPL  231
             VDDD  K K+ I   + V+   E++P L+K + + ++++AIP+ S+ R  EI +  +  
Sbjct  172  AVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIE  231

Query  232  AVEVRVVPGMADLVSGEVHLADVREVEIDELLGREVVAPRRDLLRQSIAGKCVMVTGAGG  291
            +VE+  +P + D++SGE+++ +++ VE+++LLGR+ V     L+ + ++ K ++VTGAGG
Sbjct  232  GVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGG  291

Query  292  SIGSELCRQIIKNEPVQVVLYEQSEFFLYSIEYELKQIIAAQGLAIELVPVLGSVLNGDR  351
            SIGSE+CRQ+ K +P +++L  ++E  +YSI+ EL +  + +   IE+VPV++ V N  R
Sbjct  292  SIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNR---IEFVPVIADVQNKTR  348

Query  352  LFSIMSKYNVQTIYHAAAYKHVPIVEFNMTEGILNNTVGTRVAAEAAMRANVESFVLIST  411
            ++ +M+ ++  ++YHAAA KHVP++E+N  E+I NN +GT+  AE+A  ++V  FV+IST
Sbjct  349  ILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMIST  408

Query  412  DKAVRPTNVMGASKRMAELCLQALAQDCANTRFSIVRFGNVLGSSGSVVPLFRKQIAAGG  471
            DKAV P+NVMGA+KR+AE+ +Q+L +D ++T F  VRFGNVLGS GSV+PLF++QI +GG
Sbjct  409  DKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGG  468

Query  472  PVTVTHQDITRYFMTIPEAAQLVIQAGAMGGEGEVFVLDMGQPVKIVDLARRMIHLSGFQ  531
            PVTVTH ++TRYFMTIPEA++LV+QAGA++  GEVFVLDMG+PVKIVDLA+ +I+LSG  
Sbjct  469  PVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG--  526

Query  532  VRDGANPAGDIEIQFTGLRPGEKLYEELLIGDAV  565
                 +   DI I+F+G+RPGEKLYEELL  + +
Sbjct  527  -----KKEEDIGIEFSGIRPGEKLYEELLNKNEI  555

331) Phep_3919 in NC_013061


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  308 bits (1154),  Expect = 6e-85, Method: Compositional matrix adjust.
 Identities = 216/496 (44%), Positives = 336/496 (68%), Gaps = 24/496 (4%)

Query  118  LFNFLMLITYRIIVKYFFMYIKNANLDKRRIIIYGAGEAGVATKRTFDHDPKINKTIIAF  177
            + ++L++   R++ + +  Y+ +  ++K+  ++ GAG++G    R   +   +    +  
Sbjct  113  MMHLLLIGGSRLFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLA  172

Query  178  VDDDLRKVGKTI-DGVRILD-AAQLEDLITKHEVDEVIFASYTIPSERKNQVVDICLEND  235
            VDDD  K   TI + V++ +   ++ +L+ K  +  +I+A  T++  R N++  IC  ++
Sbjct  173  VDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEG  232

Query  236  VKILNIPSPEVWAKGHVTTAQIQNINIEDLLNRKTIDIDIEGIQNQLKGKRILITGAAGS  295
            V ++++P+ E    G++   +++++++EDLL R  +++D+  I  +L  K IL+TGA+GS
Sbjct  233  VELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGS  292

Query  296  IGSEIVRQLLKFETGLIILCDQSETALHNIYLELEETHVN-TNFHAFIGDVKDQKRMETL  354
            IGSEI RQ+ KF+   IIL +++E ++ +I  EL  T  N  +F + I+DV+++ R+  +
Sbjct  293  IGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEV  352

Query  355  FNTYKPHYVYHAAAYKHVPLMEDNPAEAIKTNVMGTKTIADLSVKHGVQKFVMISTDKAV  414
             N +KP  VYHAAA KHVPLME NP EAI+ N++GTK +A+ +    V KFVMISTDKAV
Sbjct  353  MNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAV  412

Query  415  NPTNVMGASKRIAEIYVQSLNNSLNNPDLIFSNGLSYLNDSNIKPITKFITTRFGNVLGS  474
            NP+NVMGA+KRIAE+ +QSLN+                     ++ T F++ RFGNVLGS
Sbjct  413  NPSNVMGATKRIAEMVIQSLNED--------------------NSKTSFVAVRFGNVLGS  452

Query  475  NGSVIPRFKHQIENGGPVTVTHPEITRYFMTIPEACRLVLEAGCMGKGGEIYVFDMGKSV  534
             GSVIP FK+QIE+GGPVTVTHPE+TRYFMTIPEA RLVL+AG +++GGE++V+DMGK+V
Sbjct  453  RGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPV  512

Query  535  KIVELAKKMIRLAGLVPNQDIKISYSGLRPGEKLFEELLNDSEITKPTHHEKIMIGQVRE  594
            KIV+LAK++IRL+G   ++DI I +SG+RPGEKL+EELLN +EI      EKI  G+V +
Sbjct  513  KIVDLAKNLIRLSG-KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDH  571

Query  595  YIFNEIETQIYQLLNH  610
            YI  E++  + +L+N+
Sbjct  572  YIKTEVDLIVEDLINN  587

332) BMA1976 in NC_006348


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  308 bits (1154),  Expect = 6e-85, Method: Compositional matrix adjust.
 Identities = 227/540 (43%), Positives = 372/540 (69%), Gaps = 14/540 (2%)

Query  65   VFGLYRGLWVFASLPDLLRISKAVVGGGLIVMIGAVMLQPVPIIPRSVLVLSP-MLLFLA  123
            VF LY+  W +AS+++L+ + KAV ++ ++ ++   +L + + + R  L +   M+ +L 
Sbjct  61   VFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLR--LYFITWMMHLLL  118

Query  124  MGGARALYRATKEFYLYGGLIGQGKPVlilgagsagaslarelsrsGEWRLAGLL--DDD  181
            +GG+R + R  + +++  ++  + K+ L++GAG +G+ L RE+ RS + R+  +L  DDD
Sbjct  119  IGGSRLFWRVYRRYFIDNAV--EKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDD  176

Query  182  PAKHGREVYG-YKVLGSIGevadwaeaakaeyaiiaiPSASVEAQRRFATLCVRAGVRAM  240
              K+   +    KV G + ++++     +    IIAIP+ S      +  +C   GV   
Sbjct  177  KNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELF  236

Query  241  VLPSLTALMPGQGILSQIRQIDLEDLLGREAVTIDTPHVEALLRGRVVMVTGAGGSIGSE  300
             +P++  +++G+  +++++++++EDLLGR++V +D + +   L  + ++VTGAGGSIGSE
Sbjct  237  KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSE  296

Query  301  LCRQILKFQPAQLIAFDLSEYAMYRLTEELRERFPD-LPVVPIIGDAKDSLLLDQVMSRY  359
            +CRQ+ KF+P ++I ++ +E ++Y + +EL   + + +  VP+I+D ++   + +VM+ +
Sbjct  297  ICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEF  356

Query  360  APHIVFHAAAYKHVPLMEELNAWQALRNNVLGTYRVARAAIRHDVRHFVLISTDKAVNPT  419
             P  V+HAAA KHVPLME  N+ +A+RNN+LGT  VA +A   +V  FV+ISTDKAVNP+
Sbjct  357  KPYAVYHAAAHKHVPLME-YNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPS  415

Query  420  NVMGASKRLAEMACQALQQTSARTQFETVRFGNVLGSAGSVIPKFQQQIAKGGPVTVTHP  479
            NVMGA+KR+AEM  Q+L++ +++T F +VRFGNVLGS GSVIP F++QI  GGPVTVTHP
Sbjct  416  NVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHP  475

Query  480  EITRFFMTIPEASQLVLQASSMGQGGEIFILDMGEPVKIVDLARDLIRLYGFTEEQIRIE  539
            E+TR+FMTIPEAS+LVLQA++++QGGE+F+LDMG PVKIVDLA++LIRL G  EE+I IE
Sbjct  476  EMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIE  535

Query  540  FSGLRPGEKLYEELLADDETTTRTPHPKLRTAKA----REVPDHLLDELLPWLMQHRVLS  595
            FSG+RPGEKLYEELL  +E   +    K+  +K     +   D ++++L+  + ++++L 
Sbjct  536  FSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLK  595

333) BMA10229_A2767 in NC_008836


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  308 bits (1154),  Expect = 6e-85, Method: Compositional matrix adjust.
 Identities = 227/540 (43%), Positives = 372/540 (69%), Gaps = 14/540 (2%)

Query  65   VFGLYRGLWVFASLPDLLRISKAVVGGGLIVMIGAVMLQPVPIIPRSVLVLSP-MLLFLA  123
            VF LY+  W +AS+++L+ + KAV ++ ++ ++   +L + + + R  L +   M+ +L 
Sbjct  61   VFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLR--LYFITWMMHLLL  118

Query  124  MGGARALYRATKEFYLYGGLIGQGKPVlilgagsagaslarelsrsGEWRLAGLL--DDD  181
            +GG+R + R  + +++  ++  + K+ L++GAG +G+ L RE+ RS + R+  +L  DDD
Sbjct  119  IGGSRLFWRVYRRYFIDNAV--EKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDD  176

Query  182  PAKHGREVYG-YKVLGSIGevadwaeaakaeyaiiaiPSASVEAQRRFATLCVRAGVRAM  240
              K+   +    KV G + ++++     +    IIAIP+ S      +  +C   GV   
Sbjct  177  KNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELF  236

Query  241  VLPSLTALMPGQGILSQIRQIDLEDLLGREAVTIDTPHVEALLRGRVVMVTGAGGSIGSE  300
             +P++  +++G+  +++++++++EDLLGR++V +D + +   L  + ++VTGAGGSIGSE
Sbjct  237  KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSE  296

Query  301  LCRQILKFQPAQLIAFDLSEYAMYRLTEELRERFPD-LPVVPIIGDAKDSLLLDQVMSRY  359
            +CRQ+ KF+P ++I ++ +E ++Y + +EL   + + +  VP+I+D ++   + +VM+ +
Sbjct  297  ICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEF  356

Query  360  APHIVFHAAAYKHVPLMEELNAWQALRNNVLGTYRVARAAIRHDVRHFVLISTDKAVNPT  419
             P  V+HAAA KHVPLME  N+ +A+RNN+LGT  VA +A   +V  FV+ISTDKAVNP+
Sbjct  357  KPYAVYHAAAHKHVPLME-YNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPS  415

Query  420  NVMGASKRLAEMACQALQQTSARTQFETVRFGNVLGSAGSVIPKFQQQIAKGGPVTVTHP  479
            NVMGA+KR+AEM  Q+L++ +++T F +VRFGNVLGS GSVIP F++QI  GGPVTVTHP
Sbjct  416  NVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHP  475

Query  480  EITRFFMTIPEASQLVLQASSMGQGGEIFILDMGEPVKIVDLARDLIRLYGFTEEQIRIE  539
            E+TR+FMTIPEAS+LVLQA++++QGGE+F+LDMG PVKIVDLA++LIRL G  EE+I IE
Sbjct  476  EMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIE  535

Query  540  FSGLRPGEKLYEELLADDETTTRTPHPKLRTAKA----REVPDHLLDELLPWLMQHRVLS  595
            FSG+RPGEKLYEELL  +E   +    K+  +K     +   D ++++L+  + ++++L 
Sbjct  536  FSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLK  595

334) BMA10247_1838 in NC_009080


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  308 bits (1154),  Expect = 6e-85, Method: Compositional matrix adjust.
 Identities = 227/540 (43%), Positives = 372/540 (69%), Gaps = 14/540 (2%)

Query  65   VFGLYRGLWVFASLPDLLRISKAVVGGGLIVMIGAVMLQPVPIIPRSVLVLSP-MLLFLA  123
            VF LY+  W +AS+++L+ + KAV ++ ++ ++   +L + + + R  L +   M+ +L 
Sbjct  61   VFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLR--LYFITWMMHLLL  118

Query  124  MGGARALYRATKEFYLYGGLIGQGKPVlilgagsagaslarelsrsGEWRLAGLL--DDD  181
            +GG+R + R  + +++  ++  + K+ L++GAG +G+ L RE+ RS + R+  +L  DDD
Sbjct  119  IGGSRLFWRVYRRYFIDNAV--EKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDD  176

Query  182  PAKHGREVYG-YKVLGSIGevadwaeaakaeyaiiaiPSASVEAQRRFATLCVRAGVRAM  240
              K+   +    KV G + ++++     +    IIAIP+ S      +  +C   GV   
Sbjct  177  KNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELF  236

Query  241  VLPSLTALMPGQGILSQIRQIDLEDLLGREAVTIDTPHVEALLRGRVVMVTGAGGSIGSE  300
             +P++  +++G+  +++++++++EDLLGR++V +D + +   L  + ++VTGAGGSIGSE
Sbjct  237  KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSE  296

Query  301  LCRQILKFQPAQLIAFDLSEYAMYRLTEELRERFPD-LPVVPIIGDAKDSLLLDQVMSRY  359
            +CRQ+ KF+P ++I ++ +E ++Y + +EL   + + +  VP+I+D ++   + +VM+ +
Sbjct  297  ICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEF  356

Query  360  APHIVFHAAAYKHVPLMEELNAWQALRNNVLGTYRVARAAIRHDVRHFVLISTDKAVNPT  419
             P  V+HAAA KHVPLME  N+ +A+RNN+LGT  VA +A   +V  FV+ISTDKAVNP+
Sbjct  357  KPYAVYHAAAHKHVPLME-YNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPS  415

Query  420  NVMGASKRLAEMACQALQQTSARTQFETVRFGNVLGSAGSVIPKFQQQIAKGGPVTVTHP  479
            NVMGA+KR+AEM  Q+L++ +++T F +VRFGNVLGS GSVIP F++QI  GGPVTVTHP
Sbjct  416  NVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHP  475

Query  480  EITRFFMTIPEASQLVLQASSMGQGGEIFILDMGEPVKIVDLARDLIRLYGFTEEQIRIE  539
            E+TR+FMTIPEAS+LVLQA++++QGGE+F+LDMG PVKIVDLA++LIRL G  EE+I IE
Sbjct  476  EMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIE  535

Query  540  FSGLRPGEKLYEELLADDETTTRTPHPKLRTAKA----REVPDHLLDELLPWLMQHRVLS  595
            FSG+RPGEKLYEELL  +E   +    K+  +K     +   D ++++L+  + ++++L 
Sbjct  536  FSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLK  595

335) BMASAVP1_A0937 in NC_008785


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  308 bits (1154),  Expect = 6e-85, Method: Compositional matrix adjust.
 Identities = 227/540 (43%), Positives = 372/540 (69%), Gaps = 14/540 (2%)

Query  65   VFGLYRGLWVFASLPDLLRISKAVVGGGLIVMIGAVMLQPVPIIPRSVLVLSP-MLLFLA  123
            VF LY+  W +AS+++L+ + KAV ++ ++ ++   +L + + + R  L +   M+ +L 
Sbjct  61   VFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLR--LYFITWMMHLLL  118

Query  124  MGGARALYRATKEFYLYGGLIGQGKPVlilgagsagaslarelsrsGEWRLAGLL--DDD  181
            +GG+R + R  + +++  ++  + K+ L++GAG +G+ L RE+ RS + R+  +L  DDD
Sbjct  119  IGGSRLFWRVYRRYFIDNAV--EKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDD  176

Query  182  PAKHGREVYG-YKVLGSIGevadwaeaakaeyaiiaiPSASVEAQRRFATLCVRAGVRAM  240
              K+   +    KV G + ++++     +    IIAIP+ S      +  +C   GV   
Sbjct  177  KNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELF  236

Query  241  VLPSLTALMPGQGILSQIRQIDLEDLLGREAVTIDTPHVEALLRGRVVMVTGAGGSIGSE  300
             +P++  +++G+  +++++++++EDLLGR++V +D + +   L  + ++VTGAGGSIGSE
Sbjct  237  KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSE  296

Query  301  LCRQILKFQPAQLIAFDLSEYAMYRLTEELRERFPD-LPVVPIIGDAKDSLLLDQVMSRY  359
            +CRQ+ KF+P ++I ++ +E ++Y + +EL   + + +  VP+I+D ++   + +VM+ +
Sbjct  297  ICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEF  356

Query  360  APHIVFHAAAYKHVPLMEELNAWQALRNNVLGTYRVARAAIRHDVRHFVLISTDKAVNPT  419
             P  V+HAAA KHVPLME  N+ +A+RNN+LGT  VA +A   +V  FV+ISTDKAVNP+
Sbjct  357  KPYAVYHAAAHKHVPLME-YNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPS  415

Query  420  NVMGASKRLAEMACQALQQTSARTQFETVRFGNVLGSAGSVIPKFQQQIAKGGPVTVTHP  479
            NVMGA+KR+AEM  Q+L++ +++T F +VRFGNVLGS GSVIP F++QI  GGPVTVTHP
Sbjct  416  NVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHP  475

Query  480  EITRFFMTIPEASQLVLQASSMGQGGEIFILDMGEPVKIVDLARDLIRLYGFTEEQIRIE  539
            E+TR+FMTIPEAS+LVLQA++++QGGE+F+LDMG PVKIVDLA++LIRL G  EE+I IE
Sbjct  476  EMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIE  535

Query  540  FSGLRPGEKLYEELLADDETTTRTPHPKLRTAKA----REVPDHLLDELLPWLMQHRVLS  595
            FSG+RPGEKLYEELL  +E   +    K+  +K     +   D ++++L+  + ++++L 
Sbjct  536  FSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLK  595

336) wbiI in NC_017831


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  308 bits (1154),  Expect = 6e-85, Method: Compositional matrix adjust.
 Identities = 227/540 (43%), Positives = 372/540 (69%), Gaps = 14/540 (2%)

Query  65   VFGLYRGLWVFASLPDLLRISKAVVGGGLIVMIGAVMLQPVPIIPRSVLVLSP-MLLFLA  123
            VF LY+  W +AS+++L+ + KAV ++ ++ ++   +L + + + R  L +   M+ +L 
Sbjct  61   VFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLR--LYFITWMMHLLL  118

Query  124  MGGARALYRATKEFYLYGGLIGQGKPVlilgagsagaslarelsrsGEWRLAGLL--DDD  181
            +GG+R + R  + +++  ++  + K+ L++GAG +G+ L RE+ RS + R+  +L  DDD
Sbjct  119  IGGSRLFWRVYRRYFIDNAV--EKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDD  176

Query  182  PAKHGREVYG-YKVLGSIGevadwaeaakaeyaiiaiPSASVEAQRRFATLCVRAGVRAM  240
              K+   +    KV G + ++++     +    IIAIP+ S      +  +C   GV   
Sbjct  177  KNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELF  236

Query  241  VLPSLTALMPGQGILSQIRQIDLEDLLGREAVTIDTPHVEALLRGRVVMVTGAGGSIGSE  300
             +P++  +++G+  +++++++++EDLLGR++V +D + +   L  + ++VTGAGGSIGSE
Sbjct  237  KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSE  296

Query  301  LCRQILKFQPAQLIAFDLSEYAMYRLTEELRERFPD-LPVVPIIGDAKDSLLLDQVMSRY  359
            +CRQ+ KF+P ++I ++ +E ++Y + +EL   + + +  VP+I+D ++   + +VM+ +
Sbjct  297  ICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEF  356

Query  360  APHIVFHAAAYKHVPLMEELNAWQALRNNVLGTYRVARAAIRHDVRHFVLISTDKAVNPT  419
             P  V+HAAA KHVPLME  N+ +A+RNN+LGT  VA +A   +V  FV+ISTDKAVNP+
Sbjct  357  KPYAVYHAAAHKHVPLME-YNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPS  415

Query  420  NVMGASKRLAEMACQALQQTSARTQFETVRFGNVLGSAGSVIPKFQQQIAKGGPVTVTHP  479
            NVMGA+KR+AEM  Q+L++ +++T F +VRFGNVLGS GSVIP F++QI  GGPVTVTHP
Sbjct  416  NVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHP  475

Query  480  EITRFFMTIPEASQLVLQASSMGQGGEIFILDMGEPVKIVDLARDLIRLYGFTEEQIRIE  539
            E+TR+FMTIPEAS+LVLQA++++QGGE+F+LDMG PVKIVDLA++LIRL G  EE+I IE
Sbjct  476  EMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIE  535

Query  540  FSGLRPGEKLYEELLADDETTTRTPHPKLRTAKA----REVPDHLLDELLPWLMQHRVLS  595
            FSG+RPGEKLYEELL  +E   +    K+  +K     +   D ++++L+  + ++++L 
Sbjct  536  FSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLK  595

337) BURPS1106A_3127 in NC_009076


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  308 bits (1154),  Expect = 6e-85, Method: Compositional matrix adjust.
 Identities = 227/540 (43%), Positives = 372/540 (69%), Gaps = 14/540 (2%)

Query  65   VFGLYRGLWVFASLPDLLRISKAVVGGGLIVMIGAVMLQPVPIIPRSVLVLSP-MLLFLA  123
            VF LY+  W +AS+++L+ + KAV ++ ++ ++   +L + + + R  L +   M+ +L 
Sbjct  61   VFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLR--LYFITWMMHLLL  118

Query  124  MGGARALYRATKEFYLYGGLIGQGKPVlilgagsagaslarelsrsGEWRLAGLL--DDD  181
            +GG+R + R  + +++  ++  + K+ L++GAG +G+ L RE+ RS + R+  +L  DDD
Sbjct  119  IGGSRLFWRVYRRYFIDNAV--EKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDD  176

Query  182  PAKHGREVYG-YKVLGSIGevadwaeaakaeyaiiaiPSASVEAQRRFATLCVRAGVRAM  240
              K+   +    KV G + ++++     +    IIAIP+ S      +  +C   GV   
Sbjct  177  KNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELF  236

Query  241  VLPSLTALMPGQGILSQIRQIDLEDLLGREAVTIDTPHVEALLRGRVVMVTGAGGSIGSE  300
             +P++  +++G+  +++++++++EDLLGR++V +D + +   L  + ++VTGAGGSIGSE
Sbjct  237  KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSE  296

Query  301  LCRQILKFQPAQLIAFDLSEYAMYRLTEELRERFPD-LPVVPIIGDAKDSLLLDQVMSRY  359
            +CRQ+ KF+P ++I ++ +E ++Y + +EL   + + +  VP+I+D ++   + +VM+ +
Sbjct  297  ICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEF  356

Query  360  APHIVFHAAAYKHVPLMEELNAWQALRNNVLGTYRVARAAIRHDVRHFVLISTDKAVNPT  419
             P  V+HAAA KHVPLME  N+ +A+RNN+LGT  VA +A   +V  FV+ISTDKAVNP+
Sbjct  357  KPYAVYHAAAHKHVPLME-YNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPS  415

Query  420  NVMGASKRLAEMACQALQQTSARTQFETVRFGNVLGSAGSVIPKFQQQIAKGGPVTVTHP  479
            NVMGA+KR+AEM  Q+L++ +++T F +VRFGNVLGS GSVIP F++QI  GGPVTVTHP
Sbjct  416  NVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHP  475

Query  480  EITRFFMTIPEASQLVLQASSMGQGGEIFILDMGEPVKIVDLARDLIRLYGFTEEQIRIE  539
            E+TR+FMTIPEAS+LVLQA++++QGGE+F+LDMG PVKIVDLA++LIRL G  EE+I IE
Sbjct  476  EMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIE  535

Query  540  FSGLRPGEKLYEELLADDETTTRTPHPKLRTAKA----REVPDHLLDELLPWLMQHRVLS  595
            FSG+RPGEKLYEELL  +E   +    K+  +K     +   D ++++L+  + ++++L 
Sbjct  536  FSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLK  595

338) BURPS668_3090 in NC_009074


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  308 bits (1154),  Expect = 6e-85, Method: Compositional matrix adjust.
 Identities = 227/540 (43%), Positives = 372/540 (69%), Gaps = 14/540 (2%)

Query  65   VFGLYRGLWVFASLPDLLRISKAVVGGGLIVMIGAVMLQPVPIIPRSVLVLSP-MLLFLA  123
            VF LY+  W +AS+++L+ + KAV ++ ++ ++   +L + + + R  L +   M+ +L 
Sbjct  61   VFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLR--LYFITWMMHLLL  118

Query  124  MGGARALYRATKEFYLYGGLIGQGKPVlilgagsagaslarelsrsGEWRLAGLL--DDD  181
            +GG+R + R  + +++  ++  + K+ L++GAG +G+ L RE+ RS + R+  +L  DDD
Sbjct  119  IGGSRLFWRVYRRYFIDNAV--EKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDD  176

Query  182  PAKHGREVYG-YKVLGSIGevadwaeaakaeyaiiaiPSASVEAQRRFATLCVRAGVRAM  240
              K+   +    KV G + ++++     +    IIAIP+ S      +  +C   GV   
Sbjct  177  KNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELF  236

Query  241  VLPSLTALMPGQGILSQIRQIDLEDLLGREAVTIDTPHVEALLRGRVVMVTGAGGSIGSE  300
             +P++  +++G+  +++++++++EDLLGR++V +D + +   L  + ++VTGAGGSIGSE
Sbjct  237  KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSE  296

Query  301  LCRQILKFQPAQLIAFDLSEYAMYRLTEELRERFPD-LPVVPIIGDAKDSLLLDQVMSRY  359
            +CRQ+ KF+P ++I ++ +E ++Y + +EL   + + +  VP+I+D ++   + +VM+ +
Sbjct  297  ICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEF  356

Query  360  APHIVFHAAAYKHVPLMEELNAWQALRNNVLGTYRVARAAIRHDVRHFVLISTDKAVNPT  419
             P  V+HAAA KHVPLME  N+ +A+RNN+LGT  VA +A   +V  FV+ISTDKAVNP+
Sbjct  357  KPYAVYHAAAHKHVPLME-YNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPS  415

Query  420  NVMGASKRLAEMACQALQQTSARTQFETVRFGNVLGSAGSVIPKFQQQIAKGGPVTVTHP  479
            NVMGA+KR+AEM  Q+L++ +++T F +VRFGNVLGS GSVIP F++QI  GGPVTVTHP
Sbjct  416  NVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHP  475

Query  480  EITRFFMTIPEASQLVLQASSMGQGGEIFILDMGEPVKIVDLARDLIRLYGFTEEQIRIE  539
            E+TR+FMTIPEAS+LVLQA++++QGGE+F+LDMG PVKIVDLA++LIRL G  EE+I IE
Sbjct  476  EMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIE  535

Query  540  FSGLRPGEKLYEELLADDETTTRTPHPKLRTAKA----REVPDHLLDELLPWLMQHRVLS  595
            FSG+RPGEKLYEELL  +E   +    K+  +K     +   D ++++L+  + ++++L 
Sbjct  536  FSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLK  595

339) BPC006_I3171 in NC_018527


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  308 bits (1154),  Expect = 6e-85, Method: Compositional matrix adjust.
 Identities = 227/540 (43%), Positives = 372/540 (69%), Gaps = 14/540 (2%)

Query  65   VFGLYRGLWVFASLPDLLRISKAVVGGGLIVMIGAVMLQPVPIIPRSVLVLSP-MLLFLA  123
            VF LY+  W +AS+++L+ + KAV ++ ++ ++   +L + + + R  L +   M+ +L 
Sbjct  61   VFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLR--LYFITWMMHLLL  118

Query  124  MGGARALYRATKEFYLYGGLIGQGKPVlilgagsagaslarelsrsGEWRLAGLL--DDD  181
            +GG+R + R  + +++  ++  + K+ L++GAG +G+ L RE+ RS + R+  +L  DDD
Sbjct  119  IGGSRLFWRVYRRYFIDNAV--EKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDD  176

Query  182  PAKHGREVYG-YKVLGSIGevadwaeaakaeyaiiaiPSASVEAQRRFATLCVRAGVRAM  240
              K+   +    KV G + ++++     +    IIAIP+ S      +  +C   GV   
Sbjct  177  KNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELF  236

Query  241  VLPSLTALMPGQGILSQIRQIDLEDLLGREAVTIDTPHVEALLRGRVVMVTGAGGSIGSE  300
             +P++  +++G+  +++++++++EDLLGR++V +D + +   L  + ++VTGAGGSIGSE
Sbjct  237  KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSE  296

Query  301  LCRQILKFQPAQLIAFDLSEYAMYRLTEELRERFPD-LPVVPIIGDAKDSLLLDQVMSRY  359
            +CRQ+ KF+P ++I ++ +E ++Y + +EL   + + +  VP+I+D ++   + +VM+ +
Sbjct  297  ICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEF  356

Query  360  APHIVFHAAAYKHVPLMEELNAWQALRNNVLGTYRVARAAIRHDVRHFVLISTDKAVNPT  419
             P  V+HAAA KHVPLME  N+ +A+RNN+LGT  VA +A   +V  FV+ISTDKAVNP+
Sbjct  357  KPYAVYHAAAHKHVPLME-YNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPS  415

Query  420  NVMGASKRLAEMACQALQQTSARTQFETVRFGNVLGSAGSVIPKFQQQIAKGGPVTVTHP  479
            NVMGA+KR+AEM  Q+L++ +++T F +VRFGNVLGS GSVIP F++QI  GGPVTVTHP
Sbjct  416  NVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHP  475

Query  480  EITRFFMTIPEASQLVLQASSMGQGGEIFILDMGEPVKIVDLARDLIRLYGFTEEQIRIE  539
            E+TR+FMTIPEAS+LVLQA++++QGGE+F+LDMG PVKIVDLA++LIRL G  EE+I IE
Sbjct  476  EMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIE  535

Query  540  FSGLRPGEKLYEELLADDETTTRTPHPKLRTAKA----REVPDHLLDELLPWLMQHRVLS  595
            FSG+RPGEKLYEELL  +E   +    K+  +K     +   D ++++L+  + ++++L 
Sbjct  536  FSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLK  595

340) wbiI in NC_006350


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  308 bits (1154),  Expect = 6e-85, Method: Compositional matrix adjust.
 Identities = 227/540 (43%), Positives = 372/540 (69%), Gaps = 14/540 (2%)

Query  65   VFGLYRGLWVFASLPDLLRISKAVVGGGLIVMIGAVMLQPVPIIPRSVLVLSP-MLLFLA  123
            VF LY+  W +AS+++L+ + KAV ++ ++ ++   +L + + + R  L +   M+ +L 
Sbjct  61   VFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLR--LYFITWMMHLLL  118

Query  124  MGGARALYRATKEFYLYGGLIGQGKPVlilgagsagaslarelsrsGEWRLAGLL--DDD  181
            +GG+R + R  + +++  ++  + K+ L++GAG +G+ L RE+ RS + R+  +L  DDD
Sbjct  119  IGGSRLFWRVYRRYFIDNAV--EKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDD  176

Query  182  PAKHGREVYG-YKVLGSIGevadwaeaakaeyaiiaiPSASVEAQRRFATLCVRAGVRAM  240
              K+   +    KV G + ++++     +    IIAIP+ S      +  +C   GV   
Sbjct  177  KNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELF  236

Query  241  VLPSLTALMPGQGILSQIRQIDLEDLLGREAVTIDTPHVEALLRGRVVMVTGAGGSIGSE  300
             +P++  +++G+  +++++++++EDLLGR++V +D + +   L  + ++VTGAGGSIGSE
Sbjct  237  KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSE  296

Query  301  LCRQILKFQPAQLIAFDLSEYAMYRLTEELRERFPD-LPVVPIIGDAKDSLLLDQVMSRY  359
            +CRQ+ KF+P ++I ++ +E ++Y + +EL   + + +  VP+I+D ++   + +VM+ +
Sbjct  297  ICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEF  356

Query  360  APHIVFHAAAYKHVPLMEELNAWQALRNNVLGTYRVARAAIRHDVRHFVLISTDKAVNPT  419
             P  V+HAAA KHVPLME  N+ +A+RNN+LGT  VA +A   +V  FV+ISTDKAVNP+
Sbjct  357  KPYAVYHAAAHKHVPLME-YNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPS  415

Query  420  NVMGASKRLAEMACQALQQTSARTQFETVRFGNVLGSAGSVIPKFQQQIAKGGPVTVTHP  479
            NVMGA+KR+AEM  Q+L++ +++T F +VRFGNVLGS GSVIP F++QI  GGPVTVTHP
Sbjct  416  NVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHP  475

Query  480  EITRFFMTIPEASQLVLQASSMGQGGEIFILDMGEPVKIVDLARDLIRLYGFTEEQIRIE  539
            E+TR+FMTIPEAS+LVLQA++++QGGE+F+LDMG PVKIVDLA++LIRL G  EE+I IE
Sbjct  476  EMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIE  535

Query  540  FSGLRPGEKLYEELLADDETTTRTPHPKLRTAKA----REVPDHLLDELLPWLMQHRVLS  595
            FSG+RPGEKLYEELL  +E   +    K+  +K     +   D ++++L+  + ++++L 
Sbjct  536  FSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLK  595

341) BDL_2774 in NC_021884


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  308 bits (1154),  Expect = 6e-85, Method: Compositional matrix adjust.
 Identities = 227/540 (43%), Positives = 372/540 (69%), Gaps = 14/540 (2%)

Query  65   VFGLYRGLWVFASLPDLLRISKAVVGGGLIVMIGAVMLQPVPIIPRSVLVLSP-MLLFLA  123
            VF LY+  W +AS+++L+ + KAV ++ ++ ++   +L + + + R  L +   M+ +L 
Sbjct  61   VFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLR--LYFITWMMHLLL  118

Query  124  MGGARALYRATKEFYLYGGLIGQGKPVlilgagsagaslarelsrsGEWRLAGLL--DDD  181
            +GG+R + R  + +++  ++  + K+ L++GAG +G+ L RE+ RS + R+  +L  DDD
Sbjct  119  IGGSRLFWRVYRRYFIDNAV--EKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDD  176

Query  182  PAKHGREVYG-YKVLGSIGevadwaeaakaeyaiiaiPSASVEAQRRFATLCVRAGVRAM  240
              K+   +    KV G + ++++     +    IIAIP+ S      +  +C   GV   
Sbjct  177  KNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELF  236

Query  241  VLPSLTALMPGQGILSQIRQIDLEDLLGREAVTIDTPHVEALLRGRVVMVTGAGGSIGSE  300
             +P++  +++G+  +++++++++EDLLGR++V +D + +   L  + ++VTGAGGSIGSE
Sbjct  237  KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSE  296

Query  301  LCRQILKFQPAQLIAFDLSEYAMYRLTEELRERFPD-LPVVPIIGDAKDSLLLDQVMSRY  359
            +CRQ+ KF+P ++I ++ +E ++Y + +EL   + + +  VP+I+D ++   + +VM+ +
Sbjct  297  ICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEF  356

Query  360  APHIVFHAAAYKHVPLMEELNAWQALRNNVLGTYRVARAAIRHDVRHFVLISTDKAVNPT  419
             P  V+HAAA KHVPLME  N+ +A+RNN+LGT  VA +A   +V  FV+ISTDKAVNP+
Sbjct  357  KPYAVYHAAAHKHVPLME-YNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPS  415

Query  420  NVMGASKRLAEMACQALQQTSARTQFETVRFGNVLGSAGSVIPKFQQQIAKGGPVTVTHP  479
            NVMGA+KR+AEM  Q+L++ +++T F +VRFGNVLGS GSVIP F++QI  GGPVTVTHP
Sbjct  416  NVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHP  475

Query  480  EITRFFMTIPEASQLVLQASSMGQGGEIFILDMGEPVKIVDLARDLIRLYGFTEEQIRIE  539
            E+TR+FMTIPEAS+LVLQA++++QGGE+F+LDMG PVKIVDLA++LIRL G  EE+I IE
Sbjct  476  EMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIE  535

Query  540  FSGLRPGEKLYEELLADDETTTRTPHPKLRTAKA----REVPDHLLDELLPWLMQHRVLS  595
            FSG+RPGEKLYEELL  +E   +    K+  +K     +   D ++++L+  + ++++L 
Sbjct  536  FSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLK  595

342) GBP346_A3270 in NC_012695


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  308 bits (1154),  Expect = 6e-85, Method: Compositional matrix adjust.
 Identities = 227/540 (43%), Positives = 372/540 (69%), Gaps = 14/540 (2%)

Query  65   VFGLYRGLWVFASLPDLLRISKAVVGGGLIVMIGAVMLQPVPIIPRSVLVLSP-MLLFLA  123
            VF LY+  W +AS+++L+ + KAV ++ ++ ++   +L + + + R  L +   M+ +L 
Sbjct  61   VFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLR--LYFITWMMHLLL  118

Query  124  MGGARALYRATKEFYLYGGLIGQGKPVlilgagsagaslarelsrsGEWRLAGLL--DDD  181
            +GG+R + R  + +++  ++  + K+ L++GAG +G+ L RE+ RS + R+  +L  DDD
Sbjct  119  IGGSRLFWRVYRRYFIDNAV--EKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDD  176

Query  182  PAKHGREVYG-YKVLGSIGevadwaeaakaeyaiiaiPSASVEAQRRFATLCVRAGVRAM  240
              K+   +    KV G + ++++     +    IIAIP+ S      +  +C   GV   
Sbjct  177  KNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELF  236

Query  241  VLPSLTALMPGQGILSQIRQIDLEDLLGREAVTIDTPHVEALLRGRVVMVTGAGGSIGSE  300
             +P++  +++G+  +++++++++EDLLGR++V +D + +   L  + ++VTGAGGSIGSE
Sbjct  237  KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSE  296

Query  301  LCRQILKFQPAQLIAFDLSEYAMYRLTEELRERFPD-LPVVPIIGDAKDSLLLDQVMSRY  359
            +CRQ+ KF+P ++I ++ +E ++Y + +EL   + + +  VP+I+D ++   + +VM+ +
Sbjct  297  ICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEF  356

Query  360  APHIVFHAAAYKHVPLMEELNAWQALRNNVLGTYRVARAAIRHDVRHFVLISTDKAVNPT  419
             P  V+HAAA KHVPLME  N+ +A+RNN+LGT  VA +A   +V  FV+ISTDKAVNP+
Sbjct  357  KPYAVYHAAAHKHVPLME-YNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPS  415

Query  420  NVMGASKRLAEMACQALQQTSARTQFETVRFGNVLGSAGSVIPKFQQQIAKGGPVTVTHP  479
            NVMGA+KR+AEM  Q+L++ +++T F +VRFGNVLGS GSVIP F++QI  GGPVTVTHP
Sbjct  416  NVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHP  475

Query  480  EITRFFMTIPEASQLVLQASSMGQGGEIFILDMGEPVKIVDLARDLIRLYGFTEEQIRIE  539
            E+TR+FMTIPEAS+LVLQA++++QGGE+F+LDMG PVKIVDLA++LIRL G  EE+I IE
Sbjct  476  EMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIE  535

Query  540  FSGLRPGEKLYEELLADDETTTRTPHPKLRTAKA----REVPDHLLDELLPWLMQHRVLS  595
            FSG+RPGEKLYEELL  +E   +    K+  +K     +   D ++++L+  + ++++L 
Sbjct  536  FSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLK  595

343) Apre_1272 in NC_013171


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  308 bits (1154),  Expect = 7e-85, Method: Compositional matrix adjust.
 Identities = 228/537 (43%), Positives = 357/537 (67%), Gaps = 41/537 (7%)

Query  68   KMYNMILEYASYKELINITQAVILSLISHAVLMTIFVYRMP-ISYYIFGFMIQYVLTVAS  126
            ++Y+   EYAS  EL+++ +AV  S++   +L+++++   P +  Y++  M++ +L  +S
Sbjct  63   NLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGS  122

Query  127  RFIKKMMIHKSYKTDKKNQSYKRALIVGAGSAGQTLKRDISNSNNGGKTNILVVGFIDDD  186
            R++ +  + + Y  D+  +  K +L+VGAG +G  L R++  S++     +L V+  DD 
Sbjct  123  RLFWR--VYRRYFIDNAVEK-KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVD--DDK  177

Query  187  PKKKNQYIDNSRIFGGRDMIKEIVEEEAIDVILVAIPSVEEVEKREILRICNETGCEVKV  246
             K+K    +  ++ G  + I E+V    I  I++AIP++ +    EI +ICN  G E+  
Sbjct  178  NKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFK  237

Query  247  LPGIYQLVSGKVTMSTMKDIQIEDLLGRDPVKIFSNETFDYLNDKVVLVTGGGGSIGSEL  306
            +P I +++SG + ++ +K +++EDLLGRDPV +        L +K +LVTG+GGSIGSE+
Sbjct  238  MPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEI  297

Query  307  CRQIAQYGPRLLIIFDIYENNAYEIEQELKRN-NKDLNFITLIGSVRDYKRVEKVFKTYK  365
            CRQ+++++P+ +I+++  EN+ Y I+QEL +   + ++F+ +I+ V++  R+  V + +K
Sbjct  298  CRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFK  357

Query  366  PDIVFHAAAHKHVPLMEVSPVEAIKNNVRGTYNVALLSLIYDVQRFVLISTDKAVNPTSV  425
            P  V+HAAAHKHVPLME +P EAI+NN+ GT NVA  +   +V +FV+ISTDKAVNP++V
Sbjct  358  PYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNV  417

Query  426  MGATKRVCEKIIQGINDIRDSKEYNNLAKVIVQDGDRNITINPEDLLEGKNPGTEFVAVR  485
            MGATKR+ E +IQ++N+                                 N+ T FVAVR
Sbjct  418  MGATKRIAEMVIQSLNE--------------------------------DNSKTSFVAVR  445

Query  486  FGNVLGSNGSVIPLFKKQIAAGGPVTVTHPEIIRYFMTIKEAVKLVLQAGSMAQGGEIFV  545
            FGNVLGS GSVIPLFK+QI +GGPVTVTHPE+ RYFMTI EA +LVLQAG++AQGGE+FV
Sbjct  446  FGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFV  505

Query  546  LDMGEPVKIDDLARQLIRLSGYQPDIDMPVVYTGLRPGEKLYEERLMDEEALTDTHI  602
            LDMG PVKI DLA++LIRLSG + + D+ + ++G+RPGEKLYEE L++ + +   ++
Sbjct  506  LDMGKPVKIVDLAKNLIRLSG-KKEEDIGIEFSGIRPGEKLYEE-LLNKNEIHPQQV  560

344) wbiI in NC_007434


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  308 bits (1153),  Expect = 7e-85, Method: Compositional matrix adjust.
 Identities = 227/540 (43%), Positives = 372/540 (69%), Gaps = 14/540 (2%)

Query  65   VFGLYRGLWVFASLPDLLRISKAVVGGGLIVMIGAVMLQPVPIIPRSVLVLSP-MLLFLA  123
            VF LY+  W +AS+++L+ + KAV ++ ++ ++   +L + + + R  L +   M+ +L 
Sbjct  61   VFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLR--LYFITWMMHLLL  118

Query  124  MGGARALYRATKEFYLYGGLIGQGKPVlilgagsagaslarelsrsGEWRLAGLL--DDD  181
            +GG+R + R  + +++  ++  + K+ L++GAG +G+ L RE+ RS + R+  +L  DDD
Sbjct  119  IGGSRLFWRVYRRYFIDNAV--EKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDD  176

Query  182  PAKHGREVYG-YKVLGSIGevadwaeaakaeyaiiaiPSASVEAQRRFATLCVRAGVRAM  240
              K+   +    KV G + ++++     +    IIAIP+ S      +  +C   GV   
Sbjct  177  KNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELF  236

Query  241  VLPSLTALMPGQGILSQIRQIDLEDLLGREAVTIDTPHVEALLRGRVVMVTGAGGSIGSE  300
             +P++  +++G+  +++++++++EDLLGR++V +D + +   L  + ++VTGAGGSIGSE
Sbjct  237  KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSE  296

Query  301  LCRQILKFQPAQLIAFDLSEYAMYRLTEELRERFPD-LPVVPIIGDAKDSLLLDQVMSRY  359
            +CRQ+ KF+P ++I ++ +E ++Y + +EL   + + +  VP+I+D ++   + +VM+ +
Sbjct  297  ICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEF  356

Query  360  APHIVFHAAAYKHVPLMEELNAWQALRNNVLGTYRVARAAIRHDVRHFVLISTDKAVNPT  419
             P  V+HAAA KHVPLME  N+ +A+RNN+LGT  VA +A   +V  FV+ISTDKAVNP+
Sbjct  357  KPYAVYHAAAHKHVPLME-YNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPS  415

Query  420  NVMGASKRLAEMACQALQQTSARTQFETVRFGNVLGSAGSVIPKFQQQIAKGGPVTVTHP  479
            NVMGA+KR+AEM  Q+L++ +++T F +VRFGNVLGS GSVIP F++QI  GGPVTVTHP
Sbjct  416  NVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHP  475

Query  480  EITRFFMTIPEASQLVLQASSMGQGGEIFILDMGEPVKIVDLARDLIRLYGFTEEQIRIE  539
            E+TR+FMTIPEAS+LVLQA++++QGGE+F+LDMG PVKIVDLA++LIRL G  EE+I IE
Sbjct  476  EMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIE  535

Query  540  FSGLRPGEKLYEELLADDETTTRTPHPKLRTAKA----REVPDHLLDELLPWLMQHRVLS  595
            FSG+RPGEKLYEELL  +E   +    K+  +K     +   D ++++L+  + ++++L 
Sbjct  536  FSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSKEKLLK  595

345) Thivi_2782 in NC_018012


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  308 bits (1153),  Expect = 8e-85, Method: Compositional matrix adjust.
 Identities = 216/495 (44%), Positives = 350/495 (71%), Gaps = 12/495 (2%)

Query  63   WLFGLYRGVWRFASVPDLVRITKAVLAGTAAIVVLLFIVNRSALVPRSVPVlylglqlll  122
             +F LY+  W +ASV++L+ + KAV ++    ++L+ ++   +   R +  +   ++LLL
Sbjct  60   YVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLR-LYFITWMMHLLL  118

Query  123  lAGPRL---IYRW-LKDHRLNLSSGQRVLIVGAGRAGEMLARDMLRDPHRAYFP-LGFVD  177
            ++G+RL   +YR+ + D+ ++  +    L+VGAG++G +L R+MLR  +    P L+  D
Sbjct  119  IGGSRLFWRVYRRYFIDNAVEKKAT---LVVGAGQGGSVLIREMLRSQDMRMQPVLAVDD  175

Query  178  DKLRRQGAEVHGVPVLGPTESIPELVERLGIDLLMLAIPSATAREMRRLVELCEHAGVAF  237
            DK +++ +  + V V G  E IPELV ++ I  +++AIP+ + + +  +  +C+  GV +
Sbjct  176  DKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVEL  235

Query  238  RTVPELRSLMSGQVNLSQLRPVSIEDLLGREPIQLDWSAIHDGLAGRDILITGAGGSIGS  297
              +P++  ++SG++++++L+ V +EDLLGR+P++LD + I   L+ + IL+TGAGGSIGS
Sbjct  236  FKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGS  295

Query  298  ELVRQIAGAGPARLILIDHSEFNLYRIEMELLETYPT-LRFSRHlldvadaravaalfrd  356
            E+ RQ++  +P ++IL++H+E ++Y I+ EL  TY   + F   + DV +   +  +  +
Sbjct  296  EICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNE  355

Query  357  ERPGIVFHAAAYKHVPLLENQLRAAVRNNVIGTRIVAEAAAASGCERFVLISTDKAVNPS  416
             +P  V+HAAA KHVPL+E + + A+RNN++GT+ VAE+A  +   +FV+ISTDKAVNPS
Sbjct  356  FKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPS  415

Query  417  NVMGATKRIAESICQMLDGQSA-CRFITVRFGNVLGSAGSVVPLFQRQIARGGPVTVTHP  475
            NVMGATKRIAE + Q L+ +++   F++VRFGNVLGS GSV+PLF+ QI  GGPVTVTHP
Sbjct  416  NVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHP  475

Query  476  DIERFFMTIPEACQLIMQAATIGDGGEIFVLDMGEPIKIRYLAEQMIRLSGHEPGEGIAI  535
            ++ R+FMTIPEA +L++QA+++++GGE+FVLDMG P+KI  LA ++IRLSG    E+I+I
Sbjct  476  EMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKK-EEDIGI  534

Query  536  DYVGLRPGEKLYEEL  550
            ++ G+RPGEKLYEEL
Sbjct  535  EFSGIRPGEKLYEEL  549

346) Desti_4692 in NC_018025


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  307 bits (1149),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 202/470 (43%), Positives = 321/470 (69%), Gaps = 11/470 (2%)

Query  128  LIDFFMSIVFIGGSRVGLRVLREKIRLILRTRSSGKETRAVIIGAGDAGEMIVREIARDT  187
            +I   M +++IGGSR+  RV R   R ++      K T  +++GAG++G +++RE+ R  
Sbjct  109  FITWMMHLLLIGGSRLFWRVYR---RYFIDNAVEKKAT--LVVGAGQGGSVLIREMLRSQ  163

Query  188  GSRIKIAAIFDDDPKKQGHTIHG-IRVVGGVDHISAYAQDNKFDTAMIAIPSARNADMRR  246
            + R++     DDD +KQ  TI   ++V G V++I+   +  ++   +IAIP+  +  +  
Sbjct  164  DMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNE  223

Query  247  IHRILKTLDIKVKTLPGLNEIIHGSAKLTQLRDITISDLLGREEINIDTELLKKLIFRKT  306
            I++I +  ++ +  +P +++++ G   + +L+ + + DLLGR+ +++D  L+ + +  KT
Sbjct  224  INKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKT  283

Query  307  ALVTGAGGSIGSELCRQILKREPERLILLERTENSLFHVNRQLREVHPD-IPIVPVLCDV  365
             LVTGAGGSIGSE+CRQ+ K +P+++ILL + ENS++ ++++L     + I +VPV+ DV
Sbjct  284  ILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADV  343

Query  366  RDTVRVEEVFQEFRPELVFHAAAHKHVHMQELNPSECVKNNIAGMQTLARTCDRHGVSRF  425
            ++  R+ EV +EF+P  V+HAAAHKHV + E NP E ++NNI G + +A +     VS+F
Sbjct  344  QNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKF  403

Query  426  LLISTDKAVNPTSVMGATKRVCELYCQAFGM-VSDTKFLSVRFGNVLASEGSVVPIFMDQ  484
            ++ISTDKAVNP++VMGATKR+ E+  Q++    S T F++VRFGNVL+S GSV+P+F +Q
Sbjct  404  VMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQ  463

Query  485  IARGGPITVTHPEMRRYFMTIPEAVTLVLQAAALGNSGEIMALQMGEPIKIMDLIQHLLM  544
            I  GGP+TVTHPEM RYFMTIPEA  LVLQA+AL+++GE+  L+MG P+KI+DL ++L+ 
Sbjct  464  IESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIR  523

Query  545  LMGKEPDEIPIVFVGPRPGEKLFEELTAPSESNMATTHTNIKIFNRDSVD  594
            L GK  ++I I F G RPGEKL+EEL   +E +    +   KI+ R+ VD
Sbjct  524  LSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIH--PQQVYEKIY-RGKVD  570

347) MCA0903 in NC_002977


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  307 bits (1150),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 215/503 (43%), Positives = 354/503 (71%), Gaps = 31/503 (6%)

Query  65   LFGLYRGIWRFASMPDLLRIAKASASGIVLIVAA------------LFFLERLDAVPRSV  112
            +F LY+  W +AS+++L+ + KA +S+IV+ +              L+F+ ++       
Sbjct  61   VFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWM-------  113

Query  113  IPlytlllvlflSTPRALYRMWKDRSV-HLMNGRRALIVGAGKAGETLVRDLLRSSESAF  171
                  + +L+++ +R + R+ +   + + ++ + +L+VGAG++G  L+R++LRS +   
Sbjct  114  ------MHLLLIGGSRLFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRM  167

Query  172  APVAFVDDDPHKRGWEIHG-VRVRGSCDRIPALAEKLDIEAILIAMPSAGDRDMRRIVEI  230
             PV  VDDD +K+   I   V+V+G  + IP L  K+ I  I+IA+P+ +++ +  I  I
Sbjct  168  QPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKI  227

Query  231  CETTGLPFLTLPSVQEMWGGRVS-DALRDVSIEDLLGRAPVRLDSAELAGYLDGKCIMVT  289
            C+  G+ ++ +P+++++ +G +  + L+ V +EDLLGR PV LD A ++  L  K I+VT
Sbjct  228  CNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVT  287

Query  290  GGGGSIGSELCKQIARFSPGRLVVFEHCEFNLYRVELELRQAFPD-MAIHAVLGDVTDAA  348
            G+GGSIGSE+C+Q+++F P +++++ H E ++Y ++ EL +++ + + + +V++DV + +
Sbjct  288  GAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKT  347

Query  349  SVRRAIDVHKPAIIFHAAAYKHVPLLQQQVREAVFNNVIGTRTvaevaveygvgefvLIS  408
             +   ++  KP  ++HAAA KHVPL++ + +EA+ NN++GT+ VAE A E  V+ FV+IS
Sbjct  348  RILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMIS  407

Query  409  TDKAVNPTNVMGATKRAAELVVQSYN-GHTATRFITVRFGNVLGSAGSVVPLFRKQIRNG  467
            TDKAVNP+NVMGATKR AE+V+QS N +++ T F++VRFGNVLGS GSV+PLF++QI +G
Sbjct  408  TDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESG  467

Query  468  GPVTVTHPEVTRFFMTIPEACQLIMKAAATGQGGEVFVLDMGEAVRIGYLAEQMIRLSGK  527
            GPVTVTHPE+TR+FMTIPEA +L+++A+A +QGGEVFVLDMG +V+I  LA ++IRLSGK
Sbjct  468  GPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGK  527

Query  528  RPGTDIAIEYVGLRPGEKMHEEL  550
            +   DI+IE+ G+RPGEK+ EEL
Sbjct  528  K-EEDIGIEFSGIRPGEKLYEEL  549

348) Belba_2094 in NC_018010


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  307 bits (1149),  Expect = 2e-84, Method: Compositional matrix adjust.
 Identities = 208/446 (47%), Positives = 322/446 (73%), Gaps = 13/446 (2%)

Query  151  RIGMIFGAGEAGTI-THEVIKRDSKTNLIIFGFLDDDPKKEGKQIDGKVVYKG-LERLTE  208
            +  ++ GAG++G++  +E+++ +      +++ +DDD +K+   I  +V  +G +E + E
Sbjct  141  KATLVVGAGQGGSVLIREMLRSQDMRMQPVLA-VDDDKNKQKMTITERVKVQGYVEDIPE  199

Query  209  LVEKHGITELVIAIQNLSIQRKREITDECLRLNLHVSIVPPINQWVNGGLEAQAIRDVKI  268
            LV K  I  ++IAI  LS +R  EI   C    +++  +P I++ ++G LE + ++ V +
Sbjct  200  LVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEV  259

Query  269  EDLLGRDQISLDKCNINEEIKGKTVLVTGAAGTIGSELSRQIAHYNPKLLILLDQAESPL  328
            EDLLGRD + LD   I+ E+  KT+LVTGA+G+IGSE+ RQ++ ++P+ +ILL+++E+++
Sbjct  260  EDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSI  319

Query  329  YELDHEL-KDLGILCTYKIILSDIRDRRKMNMILRKYRPQVIFHAAAYKHVPMMENYPEE  387
            Y +++EL K  G    +  +++D++++ ++  ++  ++P  ++HAAA KHVP+ME  P+E
Sbjct  320  YSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHE  379

Query  388  SVKCNILGTQILADLAVMTKVEKFVLVSTDKAVNPTNVMGATKRAAEIYVQSLNLFLEKN  447
            +++ NILGT+ +A+ A    V KFV++STDKAVNP+NVMGATKR AE+ +QSLN   E N
Sbjct  380  AIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLN---EDN  436

Query  448  HKQDYTKFITTRFGNVLGSSGSVIPLFKNQILKGGPVTVTHPEITRYFMTIPEACQLVLE  507
             K   T F++ RFGNVLGS GSVIPLFKNQI  GGPVTVTHPE+TRYFMTIPEA +LVL+
Sbjct  437  SK---TSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQ  493

Query  508  AGAMGNGGEIFVFDMGQPLKILDLAKKMIQLSGKKVNEEIKIVFTGLREGEKLFEELLND  567
            AGA+++GGE+FV+DMG+P+KI+DLAK++I+LSGKK +E+I I F+G+R GEKL+EELLN 
Sbjct  494  AGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKK-EEDIGIEFSGIRPGEKLYEELLNK  552

Query  568  SETVKITHHPKILIAKVHPSNFSKIE  593
            +E        KI  +KV+  ++ K E
Sbjct  553  NEIHPQQVYEKIYRGKVD--HYIKTE  576

349) Pedsa_3253 in NC_015177


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  307 bits (1149),  Expect = 2e-84, Method: Compositional matrix adjust.
 Identities = 216/471 (46%), Positives = 325/471 (70%), Gaps = 17/471 (3%)

Query  128  RVLVKYFFVYIKNLRLDKKRVVIFGAGETGIATKRALDTDPKINMSVVAFVDNDPRKSS-  186
            RV  +YF+    +  ++KK  ++ GAG+ G    R +     + M  V  VD+D  K   
Sbjct  127  RVYRRYFI----DNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKM  182

Query  187  KVVDNVKIYHADYLERI---LLEEKIDSLIFTAPGMKTEEKNKVVDLCLDNNVKVLNVPL  243
             + + VK+   +Y+E I   +   +I  +I++ P +     N +  +C  + V ++++P 
Sbjct  183  TITERVKV--QGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPN  240

Query  244  VRTWVKGTVKTTQIKDVKIEDLLERDPIIIGESILNEQLSGKRILVTGAAGSIGSEIVRQ  303
            +   + G +   ++K V +EDLL RDP+ ++ ++++ +L+ K ILVTGA+GSIGSEI RQ
Sbjct  241  IEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQ  300

Query  304  LAKFNPQTIILNDIAETPlhelqlelqdn-nllnnFIAFIGDVRNKSRMEHLFETFKPHY  362
            ++KF+PQ IIL + +E ++  ++ EL        +F++ I+DV+NK+R+ ++ + FKP  
Sbjct  301  VSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYA  360

Query  363  VYHAAAYKHVPMMEHNPSEAICTNVGGTKNMADLAVKHGAI-KFVMVSTDKAVNPTNVMG  421
            VYHAAA KHVP+ME NP EAI  N+ GTKN+A+ + K+G + KFVM+STDKAVNP+NVMG
Sbjct  361  VYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAE-SAKEGEVSKFVMISTDKAVNPSNVMG  419

Query  422  ASKRIAEIYVQSLFCSSANGEKTRFITTRFGNVLGSNGSVIPRFREQIQKGGPLTVTHPD  481
            A+KRIAE+ +QSL   + +  KT F++ RFGNVLGS GSVIP F++QI+ GGP+TVTHP+
Sbjct  420  ATKRIAEMVIQSL---NEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPE  476

Query  482  ITRYFMTIPEACRLVLEAGSMGKGGEIYIFDMGQSVKIVELAKKMIRLSGFIPNQDIKIE  541
            +TRYFMTIPEA RLVL+AG++++GGE++++DMG++VKIV+LAK++IRLSG   ++DI IE
Sbjct  477  MTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIGIE  535

Query  542  FTGLRPGEKLYEELLNDKENTMPTHHEKIMIAKVIPYEFESVSIHIEDLVT  592
            F+G+RPGEKLYEELLN +E       EKI  +KV  Y    V + +EDL+ 
Sbjct  536  FSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLIN  586

350) SVI_1496 in NC_014012


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  307 bits (1149),  Expect = 2e-84, Method: Compositional matrix adjust.
 Identities = 220/482 (46%), Positives = 341/482 (71%), Gaps = 23/482 (4%)

Query  118  LVLIGGSR----GIIRAVVGSGMKKEGEPVIIYGAGVSGRQLVTALMQSHEY--YPFAFV  171
            L+LIGGSR       R  +++++ K +  V+  GAG +G  L+  +++S++    P   V
Sbjct  116  LLLIGGSRLFWRVYRRYFIDNAVEKKATLVV--GAGQGGSVLIREMLRSQDMRMQPVLAV  173

Query  172  DDDDSTHG-SVIQGVHVHS-PSIIRKLIKQKQATKVLLAIPSASRLRRKEILLSLEPLAV  229
            DDD + +  ++ + V V++    I  L+K+ +  K+++AIP+ S+ R +EI    +  +V
Sbjct  174  DDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGV  233

Query  230  QVLTLPAMADLVSGNKLYSDIKEVEIDDLLGRDAVAPRQDLLADNIFDKVVMVTGAGGSI  289
            +++ +P + D++SG+   +++K VE++DLLGRD+V     L++ ++ +K ++VTGAGGSI
Sbjct  234  ELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSI  293

Query  290  GSELCRQILKQKPKKLVLFELSEFGLYSIEKELSASAKESGLEVEILPMLGSVQRENRVF  349
            GSE+CRQ+ K  P+K++L+  +E ++YSI++ELS   K  G  +E++P+++ VQ   R++
Sbjct  294  GSEICRQVSKFDPQKIILLGHGENSIYSIHQELS---KTYGNRIEFVPVIADVQNKTRIL  350

Query  350  AVMDSFKVQTVYHAAAYKHVPLVEHNVVEGVRNNVFGTMYTARAAIAAKVETFVLISTDK  409
             VM+ FK  +VYHAAA KHVPL+E N  E++RNN++GT   A +A  + V  FV+ISTDK
Sbjct  351  EVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDK  410

Query  410  AVRPTNVMGTTKRMAELSLQALSKENHSTRFCMVRFGNVLGSSGSVVPLFRKQIAAGGPV  469
            AV P+NVMG+TKR+AE+ +Q+L+ +N  T F  VRFGNVLGS GSV+PLF++QI +GGPV
Sbjct  411  AVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPV  470

Query  470  TVTHPEITRFFMTIPEASQLVIQAGAMGKGGDVFVLDMGESVKIVDLASKMIRLSGFEVR  529
            TVTHPE+TR+FMTIPEAS+LV+QAGA+++GG+VFVLDMG +VKIVDLA ++IRLSG    
Sbjct  471  TVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG----  526

Query  530  DSINPAGDIEIVFTGLRPGEKLYEELLIGDDVTGTD-HERIMTAN-EAYLSWEELELILS  587
               +   DI I F+G+RPGEKLYEELL  +++   +  E+I  ++ + Y+   E++LI+ 
Sbjct  527  ---KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIK-TEVDLIVE  582

Query  588  KL  589
             L
Sbjct  583  DL  584

351) CYCME_0466 in NC_021917


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  307 bits (1152),  Expect = 8e-85, Method: Compositional matrix adjust.
 Identities = 209/498 (42%), Positives = 348/498 (70%), Gaps = 19/498 (3%)

Query  115  VHIINWLVTLFVVGGSRMLVRWWLAGA-VPANVSATRNVVVYGAGSSGTQVLDQLRIKNG  173
            + +I W++ L+++GGSR++  W++       N    +  +V GAG +G+ ++ ++   ++
Sbjct  107  LYFITWMMHLLLIGGSRLF--WRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQD  164

Query  174  MKV--VAFIDDETSLHSRQIRD-IRVRPF-SHLSRLIERYGVKDVLLAMPSVSRSRRNQI  229
            M++  V  +DD+ + +   I + ++V+ +  +++ L+ ++ +K +++A+P++S+ R N+I
Sbjct  165  MRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEI  224

Query  230  IALLEPYPVTVKTLPTLAEIAEGEVTVDDIRDVEIEDLLGRDQVLPNKSLMAKNIHNKVV  289
              + +   V +  +P + ++  GE+ V++++ VE+EDLLGRD V  + +L+++++ NK +
Sbjct  225  NKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTI  284

Query  290  MVTGAGGSIGAELCRQILQQKPKEIVLFEHSEFALYMIEHDLKSQPISEEVVIKPVLGSV  349
            +VTGAGGSIG+E+CRQ+ +  P+ I+L+ H+E ++Y I+++L S+  ++ + + PV++ V
Sbjct  285  LVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQEL-SKTYGNRIEFVPVIADV  343

Query  350  TDSDRVLLACQAAHVETVYHAAAYKHVPLVEQNPREAIKNNILGTLYTAEAALKSKVKDF  409
             +  R+L   +     +VYHAAA KHVPL+E NP+EAI+NNILGT   AE+A  + V  F
Sbjct  344  QNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKF  403

Query  410  ILISTDKAVRPTNTMGASKRMAELVLQALSNKHRGVSATQFAMVRFGNVLGSSGSVIPLF  469
            ++ISTDKAV P+N MGA+KR+AE+V+Q+L++ +   S T F  VRFGNVLGS GSVIPLF
Sbjct  404  VMISTDKAVNPSNVMGATKRIAEMVIQSLNEDN---SKTSFVAVRFGNVLGSRGSVIPLF  460

Query  470  KKQIKEGGPVTVTDPKIIRYFMTIPEAAQLVIQAGAMAKGGDVFVLDMGDPVKILELAKR  529
            K+QI  GGPVTVT+P + RYFMTIPEA++LV+QAGA+A+GG+VFVLDMG PVKI++LAK 
Sbjct  461  KNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKN  520

Query  530  MIHLSGLEVKGDDTPHGDIEIKFTGLRPGEKLYEELLIGNDVKNTD-HEKIMRANESMIP  588
            +I+LSG         + DI I F+G+RPGEKLYEELL  N++   +  EKI R++     
Sbjct  521  LIRLSG-------KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYI  573

Query  589  WEELNVLIRRLQQAINDN  606
              E+++++  L + ++ +
Sbjct  574  KTEVDLIVEDLINNFSKE  591

352) lpsB2 in NC_011985


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  307 bits (1152),  Expect = 9e-85, Method: Compositional matrix adjust.
 Identities = 206/464 (45%), Positives = 312/464 (68%), Gaps = 26/464 (5%)

Query  137  YWLGNAYQRLLNRNQLAK--VLIYGAGASGRQLSGALANSAELNVVGYL--DDDRNLHGS  192
            +W    Y+R +  N + K   L+ GAG +G  L   +  S ++ +   L  DDD+N +  
Sbjct  125  FW--RVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKM  182

Query  193  IMGG---LPIYDPTDLPALVVSGDIKGVLLALPNASRQRRNEILESMRKARVTVRTMPDL  249
             +     +  Y   D+P LV    IK +++A+P  S++R NEI        V +  MP++
Sbjct  183  TITERVKVQGY-VEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNI  241

Query  250  TALAQGRVAVSDLRELDIEDLLGRNVIAPDRALIDKNIRGKVVMVTGAGGSIGSELCRQI  309
              +  G + V++L+ +++EDLLGR+ +  D ALI +++  K ++VTGAGGSIGSE+CRQ+
Sbjct  242  EDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQV  301

Query  310  LKNGPSCLLLVEQNEFGLYAIHGELEKAAATSGNSEIRIIPFLASIRDDRRLRQIMEAWR  369
             K +P  ++L+ + E ++Y+IH EL K+ +      I ++P +A +++  R+ ++M+  +
Sbjct  302  SKFDPQKIILLGHGENSIYSIHQELSKTYGNR----IEFVPVIADVQNKTRILEVMNEFK  357

Query  370  PKTVYHAAAYKHVPLVEYNPVEGIRNNVLGTLTTAEVARDCGVEDFVLISTDKAVRPTNI  429
            P +VYHAAA KHVPL+EYNP E+IRNN+LGT   AE A++  V  FV+ISTDKAV P+N+
Sbjct  358  PYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNV  417

Query  430  MGASKRLAEMVLQAMDADRKPGADGTNFAMVRFGNVLGSSGSVVPLFRQQIRDGGPITLT  489
            MGA+KR+AEMV+Q+++ D       T+F  VRFGNVLGS GSV+PLF++QI  GGP+T+T
Sbjct  418  MGATKRIAEMVIQSLNED----NSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVT  473

Query  490  HPDITRYFMTIPEASQLVIQAGAMSGGGDVFLLDMGEPVRIADLARRMVELSGLTVRDED  549
            HP++TRYFMTIPEAS+LV+QAGA++ GG+VF+LDMG PV+I DLA+ ++ LSG       
Sbjct  474  HPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-------  526

Query  550  EPDGDIELEITGLRPGEKLYEELLIGDNPQSTS-HPRIMRAKED  592
              + DI +E++G+RPGEKLYEELL  ++ ++     +I R+K D
Sbjct  527  KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVD  570

353) Dole_1009 in NC_009943


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  307 bits (1152),  Expect = 9e-85, Method: Compositional matrix adjust.
 Identities = 222/532 (42%), Positives = 348/532 (66%), Gaps = 30/532 (5%)

Query  61   YWFDLYRGMWRYTSLSDLFNIVKAALITNLVIVGGLLFFNRFQGFPRSVFLIDALLTILT  120
            Y F+LY+  W Y+S+S+L +++KA   + +V +  + ++     F R +++I  ++ +L 
Sbjct  60   YVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLR-LYFITWMMHLLL  118

Query  121  VSGFRILIRIYFEHAAGDKMSQVVKKAFSQVFSKTDGHTRRVIILGAGDCGEKIYREIAH  180
            ++G R++ R+Y              + +   F     + +  +++GAG+ G  + RE+ +
Sbjct  119  IGGSRLFWRVY--------------RRY---FIDNAVEKKATLVVGAGQGGSVLIREMLR  161

Query  181  NPSLGFQVVGFLDDNPVKVGKKIHG-LPVLGEIAGVSKFVARLSIDELIIAIPTATPEQM  239
            +  +  Q V  +DD+  K    I   + V G + +++ +V ++ I  +IIAIPT +  ++
Sbjct  162  SQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRL  221

Query  240  RTIVALCEKSGIPYKTVPGFSELLNGTPSVAALRKVAYRDLLGREVVRLDKEGIGAYLAG  299
              I  +C+  G+    +P + ++L+G   V  L+KV   DLLGR+ V LD   I+  L+ 
Sbjct  222  NEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTN  281

Query  300  KTVLVTGAGGSIGSELCRQILEFSPGRIVLFDRSETALYEIDLELKGQRRDTGLRIS--P  357
            KT+LVTGAGGSIGSE+CRQ+  F P +I+L++++E ++Y I+ EL    +  G RI   P
Sbjct  282  KTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELS---KTYGNRIEFVP  338

Query  358  VLGDIQDQRQLEHLFQLTAPHVVFHAAAYKHVPMLEAHPWKAVKNNIIGTRNLVELSKRF  417
            V++D+Q++ ++ ++ +   P  V+HAAA KHVP++E +P  A++NNI+GT+N+ E +K  
Sbjct  339  VIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEG  398

Query  418  AVERFVLVSTDKAVRPANVMGASKRVAELLLQCGNGGAPCTTQFMIVRFGNVLGSAGSVI  477
             V +FV++STDKAV P+NVMGA+KR+AE+++Q  N +    T F+ VRFGNVLGS GSVI
Sbjct  399  EVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDN-SKTSFVAVRFGNVLGSRGSVI  457

Query  478  PLFQKQIGKGGPVTVTHPEVTRFFMTVSEACQLILQAGAIGNTGRGRAEVFVLKMGTPVK  537
            PLF++QI  GGPVTVTHPE+TR+FMT++EA +L+LQAGA+++ G    EVFVL MG PVK
Sbjct  458  PLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGG----EVFVLDMGKPVK  513

Query  538  IVDMARDLIRLSGLEPDKDISIEFVGLRPGEKLYEELIVEGEGVVPTEHEKI  589
            IVD+A++LIRLSG   + DI+IEF G+RPGEKLYEEL+   E       EKI
Sbjct  514  IVDLAKNLIRLSG-KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKI  564

354) Calni_0125 in NC_014758


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  306 bits (1146),  Expect = 2e-84, Method: Compositional matrix adjust.
 Identities = 226/468 (49%), Positives = 336/468 (72%), Gaps = 5/468 (1%)

Query  122  SPRLFKESYGK-FLGEKVTKKRVLIVGAGSAGQMIAREIKDNDKLHAEVVGFVDDDERKI  180
            ++RLF   Y + F+++ V KK  L+VGAG +G ++ RE+  ++ ++ + V  VDDD  K 
Sbjct  121  GSRLFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQ  180

Query  181  KTRILG-IPVIGSTKEIPIIAKDDEIDEIVIAIPSASKEEMQRIVEKCREAAVGYKIIPG  239
            K  I   + V G   +IP + K   I  I+IAIP+ S+  ++ I   C   +V    +P 
Sbjct  181  KMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPN  240

Query  240  FGEILEGKLSVNRIRDVEIEDLLGRPPIKLKLAEIEQYLKDKVVLVTGAGGSIGGEIARQ  299
            + ++L G L VN ++ VE+EDLLGR P+ L +A I + L +K +LVTGAGGSIG+EI RQ
Sbjct  241  IEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQ  300

Query  300  VSRYSPKNLIILDIAETPLFFIENYL-KSSKNDLNLTTIIGDVKNIVKMEQLFKSYKPDI  358
            VS++ P+++I+L+ +E +++ I++ L K+  N +++  +I+DV+N  ++ ++ + +KP  
Sbjct  301  VSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYA  360

Query  359  VIHAAAYKHVPMMELNPDEAIWNNIFGTKVIADLSCKYEVDKFILISTDKAVNPTNIMGA  418
            V HAAA KHVP+ME NP+EAI+NNI+GTK +A+ +   EV KF++ISTDKAVNP+N+MGA
Sbjct  361  VYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGA  420

Query  419  TKRIAELYIKTFPDD-LKTKFIIVRFGNVLGSNGSVIPIFKEQIKNGGPVTVTHPEVTRY  477
            TKRIAE+ I+++ +D  KT F+ VRFGNVLGS GSVIP+FK+QI +GGPVTVTHPE+TRY
Sbjct  421  TKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRY  480

Query  478  FMTIPEAVQLVLQAGGIGKGGELFLLDMGEPVKILKLAEEMIRLSNFEPYKEIDIVFTGL  537
            FMTIPEA +LVLQAG++++GGE+F+LDMG PVKI+ LA ++IRLS      +I+I F+G+
Sbjct  481  FMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIGIEFSGI  539

Query  538  RPGeklyeellldeeGSTKTEYDKIWIAKQQPIDKDIVLNVINDLLEK  585
            RPGEKLYEELL  +E   +  Y+KI  +K +   K  V  +++DL+++
Sbjct  540  RPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINN  587

355) capD in NC_015844


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  306 bits (1147),  Expect = 2e-84, Method: Compositional matrix adjust.
 Identities = 208/464 (45%), Positives = 329/464 (71%), Gaps = 23/464 (4%)

Query  122  IHSLLSFVALTASRYVFKALYNNLMARDFKVNKNVLIFGAGESGILTQNALVNHTKSRVR  181
            I  ++ ++ + +SR +F  +Y      +   +K  L+ GAG++G +    ++     R++
Sbjct  110  ITWMMHLLLIGGSR-LFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQ  168

Query  182  VVGYVDEDVKKVGKQING---VKVFHKDVLNRDFIVKNNISEVIFSIQNIDPRSLKVL--  236
             V  VD+D +K    I     V+ +  D+   +++ K  I  +I++I  +  + L+ +  
Sbjct  169  PVLAVDDDKNKQKMTITERVKVQGYVEDI--PELVKKFRIKKIIIAIPTLSQKRLNEINK  226

Query  237  ---VEGLVDFPVQVKIVPPVEQWINGELKVSQIKQIQIEDLLDRAPINIKNSKIEGEIKN  293
               +EG+  F +     P +E+ ++GEL V+++K++++EDLL+R P+++  + I  E+ N
Sbjct  227  ICNIEGVELFKM-----PNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTN  281

Query  294  KVILVTGGAGSIGSEIVRQVCTYNYKSLIVIDQSESALYDLQQELKQNGYHN---FMPIV  350
            K ILVTG++GSIGSEI RQV  ++ + +I+++++E+++Y ++QEL +  Y N   F+P++
Sbjct  282  KTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKT-YGNRIEFVPVI  340

Query  351  GDVRDKNRLNNLFQEYKPNIVFHAAAYKHVPLMEYNAYEAIKINVAGTKVVADLSISHNV  410
            +DV++K R+ ++ +E+KP  V+HAAA KHVPLMEYN+ EAI+ N+ GTK VA+ +   +V
Sbjct  341  ADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEV  400

Query  411  DKFIFISTDKAVNPTNVMGATKRIAEMYISCM-QQKGKTKFITTRFGNVLGSNGSVIPLF  469
             KF+ ISTDKAVNP+NVMGATKRIAEM I  + ++++KT F++ RFGNVLGS GSVIPLF
Sbjct  401  SKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLF  460

Query  470  KKQIEKGGPLTVTHENVTRFFMTIPEASQLVLEAGAMGEGGEIFIFDMGESVKIFDLAKN  529
            K+QIE GGP+TVTH ++TR+FMTIPEAS+LVL+AGA+++GGE+F++DMG +VKI DLAKN
Sbjct  461  KNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKN  520

Query  530  MIKLSGLRYPEDIDIKITGLRPGEKLYEELLANGE-NTLPTYHK  572
            +I+LSG +  EDI+I ++G+RPGEKLYEELL + E +    Y+K
Sbjct  521  LIRLSGKK-EEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEK  563

356) Celly_2642 in NC_015167


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  306 bits (1148),  Expect = 2e-84, Method: Compositional matrix adjust.
 Identities = 212/506 (42%), Positives = 354/506 (70%), Gaps = 27/506 (5%)

Query  117  LQIIIVHSLIAFLALSASRYLFKSLYNSIVNKSLHNTKRVLIYGAGESGIITHSAITNHS  176
            L++ ++  ++ +L +++SR LF  +Y      +  + K  L+ GAG++G +    +    
Sbjct  105  LRLYFITWMMHLLLIGGSR-LFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQ  163

Query  177  KSNVKVVGYVDNNSKKVGKSING---VNVYAKDDLNEEFLVNNGISEVIFSIQNINPTAL  233
               ++ V  VD++ +K   +I     V+ Y  D    E++ +  I  +I++I  ++   L
Sbjct  164  DMRMQPVLAVDDDKNKQKMTITERVKVQGYVED--IPELVKKFRIKKIIIAIPTLSQKRL  221

Query  234  REL-----VESMVDFPVKVKIVPPVEDWINGELKFSQIKQVQIEDLLDRAPINIENSKIS  288
             E+     +E++  F +     P +ED ++GEL  +++K+V++EDLL+R P++++ + IS
Sbjct  222  NEINKICNIEGVELFKM-----PNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALIS  276

Query  289  GELKDKVVVVTGGAGSIGSELVRQICKYNYKSLIVIDQAESALYDLQQELKQN-GYH-NF  346
             EL +K ++VTG++GSIGSE+ RQ+ K++ + +I+++++E+++Y ++QEL +  G + +F
Sbjct  277  RELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEF  336

Query  347  FPIVGDIRDKNRLNYLFNEYKPNIVFHAAAYKHVPLMEYNSYEAIKINVAGTKVLADLSI  406
             P+++D+++K R+  + NE+KP  V+HAAA KHVPLMEYN+ EAI+ N+ GTK +A+ + 
Sbjct  337  VPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAK  396

Query  407  QHNVDKFVFVSTDKAVNPTNVMGGTKRIAEMYISCMQQEN-KTKFITTRFGNVLGSNGSV  465
            + +V KFV +STDKAVNP+NVMG+TKRIAEM I  ++++N KT F++ RFGNVLGS GSV
Sbjct  397  EGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSV  456

Query  466  IPLFKKQIDKGGPLTVTHKDVTRFFMTIPEASQLVLEAGAMGEGGEIFIFDMGKSVKIFD  525
            IPLFK+QI+ GGP+TVTH ++TR+FMTIPEAS+LVL+AGA+++GGE+F++DMGK+VKI D
Sbjct  457  IPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVD  516

Query  526  LAKNMIKLCGLKYPEEMDIKITGLRPGEKLYEELLANGE-NTMPTYHKKIMISKVRELDY  584
            LAKN+I+L G K  E+++I ++G+RPGEKLYEELL + E +    Y+K   I + +  +Y
Sbjct  517  LAKNLIRLSGKK-EEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEK---IYRGKVDHY  572

Query  585  VKTRSLIDELCVNNMFFKSNTISLMK  610
            +KT     +L V++++ + +   L+K
Sbjct  573  IKTEV---DLIVEDLINNFSKEKLLK  595

357) LLO_0936 in NC_013861


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  306 bits (1145),  Expect = 3e-84, Method: Compositional matrix adjust.
 Identities = 211/517 (41%), Positives = 348/517 (68%), Gaps = 17/517 (3%)

Query  68   FYFKTYRGLWRFFSLNDVIRILKASVTATTIAIPVLYLTSILHELPRSIFPLYCV--ILT  125
            + F+ Y+  W + S+++++ +LKA  ++  +++        L     +++ LY +  ++ 
Sbjct  60   YVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLL----LVSLLISESPFLRLYFITWMMH  115

Query  126  AFLCSARLLRRLYWD--RRARGSKTTEMKRVLIVGAGMAGEGLVRDLKRSNQYK--PIGF  181
             +L ++    RL+W   RR    ++ E K  L+VGAG +G  L+R++ RS++ +  P+  
Sbjct  116  LLLIGGS---RLFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLA  172

Query  182  IDDNLSKKGLEVHG-VPVLGVTSQITMRVKEYAIDLifiaipsasssiMRRIVTACESSK  240
            +DD+ +K+ + +   V V G   +I   VK + I  I+IAIP+ S   +  I   C+   
Sbjct  173  VDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEG  232

Query  241  VPFSTLPGLNDLAAGRVEVNALRPVNIEDLLGREQVYLQWDKLIAEISEKRVLVTGGGGS  300
            V +  +P ++D+ +G +EVN L+ V++EDLLGR+ V L+   +  E+++K +LVTG+GGS
Sbjct  233  VELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGS  292

Query  301  IGSELCRQILALKPQSLVIVENSEFNLYQIELELKQNFPD-IPLQLKLVNITDEIAINQL  359
            IGSE+CRQ+  + PQ ++++ ++E ++Y I+ EL + + + I +   + ++ +   I ++
Sbjct  293  IGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEV  352

Query  360  FNEYSPEIVFHAAAYKHVPLLENQIRVAVVNNILGTQIVAKASVAAHTEKFILISTDKAV  419
             NE+ P  V+HAAA KHVPL+E + + A+ NNILGT+ VA ++  ++  KF++ISTDKAV
Sbjct  353  MNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAV  412

Query  420  NPTNIMGTTKRVAEIFCQNL-DSRVKTQFITVRFGNVLGSAGSVVPLFQKQLQNGGPIKV  478
            NP+N+MG+TKR+AE+  Q+L +   KT F++VRFGNVLGS GSV+PLF++Q+++GGP+ V
Sbjct  413  NPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTV  472

Query  479  THPDMQRYFMTIPEACQLILQAMVNGKGGEIFVLDMGEPVKISYLAEQMIRLAGKEPGKD  538
            THP+M RYFMTIPEA +L+LQA   ++GGE+FVLDMG PVKI  LA ++IRL+GK    D
Sbjct  473  THPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKK-EED  531

Query  539  IMIEYTGLRPGEKLFEELFHESEQLESTEHEKLFKAK  575
            I IE++G+RPGEKL+EEL++ +E       EK++++K
Sbjct  532  IGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGK  568

358) PSPA7_1986 in NC_009656


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  305 bits (1142),  Expect = 5e-84, Method: Compositional matrix adjust.
 Identities = 219/528 (42%), Positives = 344/528 (66%), Gaps = 57/528 (10%)

Query  123  LVFNYWWLSMLLIGGLRL---AMRQYFMGDWYSAVQSVPFLNRQDGLPRVAIYGAGAAGN  179
            L F  W + +LLIGG RL     R+YF+++          ++++  L    + GAG +G+
Sbjct  107  LYFITWMMHLLLIGGSRLFWRVYRRYFIDNA---------VEKKATL----VVGAGQGGS  153

Query  180  QLVAALRLGRAMR--PVAFIDDDKQIANRVIAG---LRVYTAKHIRQMIDETGAQEVLLA  234
             L+  +  ++ MR  PV  +DDDK+  +  I+    ++ Y   +I +++     + +++A
Sbjct  154  VLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVE-DIPELVKKFRIKKIIIA  212

Query  235  IPSATRARRREI-----LESLEPFPLHVRSMPGFMDLASGRVKVDDLQEVDIADLLGRDS  289
            IP+ ++ R  EI     +E++E F      MP + D+ SG + V++L+ V++ DLLGRD+
Sbjct  213  IPTLSQKRLNEINKICNIEGVELF-----KMPNIEDVLSGELEVNNLKKVEVEDLLGRDP  267

Query  290  VAPRKELLERCIRGQVVMVTGAGGSIGSELCRQILSCSPSVLILFEHSEYNLYSIHQELE  349
            V     L+ R +  + ++VTGAGGSIGSE+CRQ+    P  +IL+ H+E ++YSIHQEL 
Sbjct  268  VELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELS  327

Query  350  RRVKRESLSVNLLPILGSVRNPERLVDVMRTWKVNTVYHAAAYKHVPIVEHNIAEGVLNN  409
            +        ++++P+++ V+N  R+++VM   K  +VYHAAA KHVP++E N  E++ NN
Sbjct  328  KTYGN---RIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNN  384

Query  410  VMGTLHavqaavqvgvqHFVLISTDKAVRPTNVMGSTKRLAEMVLQALSNESAPVLFGDQ  469
            ++GT +  ++A +  V  FV+ISTDKAV P+NVMG+TKR+AEMV+Q+L+++++       
Sbjct  385  ILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNS-------  437

Query  470  KGVHQVNKTRFTMVRFGNVLGSSGSVIPLFREQIKRGGPVTVTHPSITRYFMTIPEAAQL  529
                   KT F  VRFGNVLGS GSVIPLF++QI  GGPVTVTHP +TRYFMTIPEA++L
Sbjct  438  -------KTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRL  490

Query  530  VIQAGSMGQGGDVFVLDMGPPVKILELAEKMVHLSGLSVRSERSPHGDIAIEFSGLRPGE  589
            V+QAG+++QGG+VFVLDMG PVKI++LA ++++LSG         + DI+IEFSG+RPGE
Sbjct  491  VLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-------KKEEDIGIEFSGIRPGE  543

Query  590  KLYEELLIGDNVNPTD-HPMIMRANEEHLSWEAFKGVLEQLLTAVGTD  636
            KLYEELL  ++++P +    I R++ +H        ++E+L+   + +
Sbjct  544  KLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSKE  591

359) Ccur_05820 in NC_013170


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  304 bits (1138),  Expect = 1e-83, Method: Compositional matrix adjust.
 Identities = 240/500 (48%), Positives = 354/500 (71%), Gaps = 11/500 (2%)

Query  61   FRLYNDLWEYASVDDALRITFTVGLSTLVTAVFLWLAGQWIP-IRVYVAALIIMVFFVGG  119
            F LY+  WEYASV + + +  +V  S +VT +++ L     P +R+Y  + ++ ++++GG
Sbjct  62   FNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGG  121

Query  120  SRMFFRVLRSKRREIERAHADEERPRTLIVGAGETGSLAIMRMASKDPQMPGEPIVAVDD  179
            SR+F RV R  R  I+ A    E+  TL+VGAG+ GS+ I  M  +  +M  +P++AVDD
Sbjct  122  SRLFWRVYR--RYFIDNA---VEKKATLVVGAGQGGSVLIREML-RSQDMRMQPVLAVDD  175

Query  180  DKKKRNLRVHG-VRVAGTSEDIIELVERFGIEQIVVAIPSASINDRKRIYSICTQTTCQL  238
            DK+K+++ +   V+V G  EDI ELV +F I +I++AIP+ S +  + I  IC     +L
Sbjct  176  DKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVEL  235

Query  239  RTLPNVRELKLDEINDIALRDVNVADLLGREEVVLNTRLVSGYIAGKTILVTGGAGSIGS  298
              +PN+ ++  +E++   L+ V+V DLLGR+ V L+  L+S  ++ KTILVTG++GSIGS
Sbjct  236  FKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGS  295

Query  299  ELCRQMCPVAPARIVVFDMWENDAYLLKRSIQEQYDD-IDVQVEIGNICDESRLRDVFEK  357
            E+CRQ+    P +I++++  EN  Y + + +   Y++ I+    I+++ + +R+ +V + 
Sbjct  296  EICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNE  355

Query  358  YhpaavfhaaahkhvpLMEMCPREAIQNNIFGTLNTVRLAHEFGVARFIFISTDKAVNPT  417
            + P AV+HAAAHKHVPLME  P+EAI+NNI+GT N    A E  V++F+ ISTDKAVNP+
Sbjct  356  FKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPS  415

Query  418  SVMGATKRMGEMIIQHYAQ-KSNTVFAAVRFGNVLGSNGSVIPIFKKQIKEGGPVTVTDP  476
            +VMGATKR++EM+IQ   + +S+T F AVRFGNVLGS GSVIP+FK+QI  GGPVTVT+P
Sbjct  416  NVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHP  475

Query  477  GIERFFMTIPEASRLVIQAGGMATGGEIFILDMGEPVKIVDLARALIQLSGLEVGKDIEI  536
             + R+FMTIPEASRLV+QAG++A GGE+F+LDMG PVKIVDLA+ LI+LSG     DI I
Sbjct  476  EMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIGI  534

Query  537  VYTGLRPGEKMYEELLMNEE  556
             ++G+RPGEK+YEELL ++E
Sbjct  535  EFSGIRPGEKLYEELLNKNE  554

360) Sama_2244 in NC_008700


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  304 bits (1140),  Expect = 7e-84, Method: Compositional matrix adjust.
 Identities = 208/453 (46%), Positives = 327/453 (73%), Gaps = 20/453 (4%)

Query  121  LVFVGGAR----ALMRSLVGNGINRRGEPVIIYGAGVSGRQTALALAQSHEY--HPFAFV  174
            L+++GG+R       R +++N++++++  V+  GAG +G      + +S++   +P   V
Sbjct  116  LLLIGGSRLFWRVYRRYFIDNAVEKKATLVV--GAGQGGSVLIREMLRSQDMRMQPVLAV  173

Query  175  DDDETLHG-TVIQGLHVHS-PSIIKKLIKQQKASRVLLAMPSASRARRQQILQTLEPLSV  232
            DDD   +  T+ + + V++    I  L+K+ +  ++++A+P+ S+ R ++I +  +  +V
Sbjct  174  DDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGV  233

Query  233  KVMTLPAMADLVSGNKLFSDVKEVEIEDLLGRDAVAPRKDLMAANITGKVVMVTGAGGSI  292
             +  +P + D++SG+   +++K VE+EDLLGRD+V     L++ ++T K ++VTGAGGSI
Sbjct  234  ELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSI  293

Query  293  GSELCRQILRLAPRKLVLFELSEFGLYSIERELQAIRAELGLDVELFPMMGSVQRQNRVQ  352
            GSE+CRQ+ ++ P+K++L+  +E ++YSI++EL       G  +E+ P+++ VQ + R+ 
Sbjct  294  GSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKT---YGNRIEFVPVIADVQNKTRIL  350

Query  353  AVMEAFKVQTVYHAAAYKHVPLVEHNVVEGVRNNVFGTLYTAQAAIATGVETFVLISTDK  412
             VM+ FK  +VYHAAA KHVPL+E N  E++RNN++GT   A++A    V  FV+ISTDK
Sbjct  351  EVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDK  410

Query  413  AVRPTNVMGTTKRMAELVLQALSKLNSGTRFCMVRFGNVLGSSGSVVPLFRKQIANGGPV  472
            AV P+NVMG+TKR+AE+V+Q+L+  NS T F  VRFGNVLGS GSV+PLF++QI +GGPV
Sbjct  411  AVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPV  470

Query  473  TVTHPEITRFFMTIPEASQLVIQAGAMGIGGDVFVLDMGQSVKIVDLARKMIRLSGFEVK  532
            TVTHPE+TR+FMTIPEAS+LV+QAGA++ GG+VFVLDMG++VKIVDLA+++IRLSG    
Sbjct  471  TVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG----  526

Query  533  DEHNPDGDIEIQFSGLRPGEKLYEELLIGDNVE  565
               + + DI I+FSG+RPGEKLYEELL  ++++
Sbjct  527  ---KKEEDIGIEFSGIRPGEKLYEELLNKNEIH  556

361) Q91_1970 in NC_018697


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  304 bits (1140),  Expect = 7e-84, Method: Compositional matrix adjust.
 Identities = 208/500 (42%), Positives = 347/500 (70%), Gaps = 23/500 (4%)

Query  115  VHIINWLVALLMVGGSRM---VVRWWLAGLAPanvnaarnvvIYGAGSSGMQVLGQLNVK  171
            + +I W++ LL++GGSR+   V R+ + +    N    +  ++ GAG +G  ++ ++   
Sbjct  107  LYFITWMMHLLLIGGSRLFWRVYRRYFID----NAVEKKATLVVGAGQGGSVLIREMLRS  162

Query  172  SGMKV--VAFIDDEPSLHRRQMGD-VRVHPF-SHLSRLIERHGVKDVLLAMPSVSRSRRN  227
             +M++  V  +DD+ + ++  + + V+V+ +  +++ L+ +  +K +++A+P++S+ R N
Sbjct  163  QDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLN  222

Query  228  QVIALLEPYPVTVKTLPTLAEIAEGEVTVDDIRDVEIEDLLGRDQVLPNKSLMAKNIHNK  287
            ++  + +   V +  +P + ++  GE+ V++++ VE+EDLLGRD V  + +L+++++ NK
Sbjct  223  EINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNK  282

Query  288  VVMVTGAGGSIGAELCRQILQQKPKEIVLFEHSEFALYMIEHDLKNQPISEEVVIKPVLG  347
             ++VTGAGGSIG+E+CRQ+ +  P+ I+L+ H+E ++Y I+++L ++  ++ + + PV++
Sbjct  283  TILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQEL-SKTYGNRIEFVPVIA  341

Query  348  SVTDSDRVLLACQAAHVETVYHAAAYKHVPLVEQNPREAIKNNILGTLYTAEAALKSKVK  407
             V +  R+L   +     +VYHAAA KHVPL+E NP+EAI+NNILGT   AE+A  + V 
Sbjct  342  DVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVS  401

Query  408  DFILISTDKAVRPTNTMGASKRMAELVLQALSNKHRGVSATQFAMVRFGNVLGSSGSVIP  467
             F++ISTDKAV P+N MGA+KR+AE+V+Q+L++ +   S T F  VRFGNVLGS GSVIP
Sbjct  402  KFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDN---SKTSFVAVRFGNVLGSRGSVIP  458

Query  468  LFKKQIKEGGPVTVTDPKIIRYFMTIPEAAQLVIQAGAMAKGGDVFVLDMGDPVKILELA  527
            LFK+QI  GGPVTVT+P + RYFMTIPEA++LV+QAGA+A+GG+VFVLDMG PVKI++LA
Sbjct  459  LFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLA  518

Query  528  KRMIHLSGLEVKGDDTPHGDIEIKFTGLRPGEKLYEELLIGNDVKNTD-HEKIMRANESM  586
            K +I+LSG         + DI I F+G+RPGEKLYEELL  N++   +  EKI R++   
Sbjct  519  KNLIRLSG-------KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDH  571

Query  587  IPWEELNVLIRRLQQAINDN  606
                E+++++  L + ++ +
Sbjct  572  YIKTEVDLIVEDLINNFSKE  591

362) Nwat_2113 in NC_014315


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  304 bits (1140),  Expect = 7e-84, Method: Compositional matrix adjust.
 Identities = 203/499 (41%), Positives = 348/499 (70%), Gaps = 15/499 (3%)

Query  69   IGLYRGLWRFASIPDLLNIIRAVGYGALLVALTLFLINRLNGVPRSVLMLYPV---FSLL  125
            + LY+  W +AS+++L+++++AV  + ++  L       L     + L LY +     LL
Sbjct  62   FNLYHRAWEYASVSELMSVLKAVTSSIVVTLLL----VSLLISESPFLRLYFITWMMHLL  117

Query  126  LLAGPRLAYRVWKDRRLTLASNPHRKRVLILGAGRAGDLLVRDML--VEGHYLPVAFLDD  183
            L++G+RL  RV   RR  + +  ++K  L++GAG++G +L+R+ML   + +  PV  +DD
Sbjct  118  LIGGSRLFWRVY--RRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDD  175

Query  184  RPDLIGRQVRG-IPVVGLLAQLPAKVGEMAADVVVIAMPSANNRQMRRAVSLCEQAQVSY  242
              +     +   + V G + ++P  V       ++IA+P+ +++++     +C+   V  
Sbjct  176  DKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVEL  235

Query  243  RTLPRLQDLVAGRASIKELREVAIDDLLGRDEIFLDWDYIRQDLEAKSLLVsggggsigs  302
              +P ++D+++G   +++L+ V ++DLLGRD + LD   I ++L  K++LV+G+GGSIGS
Sbjct  236  FKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGS  295

Query  303  ELCRQLGRLGPASLVVIDNSEYKLYRLEQELRRKLPA-LNLHAYLCDVRDEAGVKEILAC  361
            E+CRQ+++++P  +++++++E  +Y ++QEL +     +++ + + DV++ + + E++  
Sbjct  296  EICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNE  355

Query  362  HSPEVVFHAAAYKHVPLLERQIRQAVRNNVFGTRCLAEAARQAGCGTFVLISTDKAVNPT  421
              P  V+HAAA KHVPL+E + ++A+RNN++GT+ +AE+A+++  + FV+ISTDKAVNP+
Sbjct  356  FKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPS  415

Query  422  SVMGASKRVAELLCQDLNR-HSQTRFIVVRFGNVLGSAGSVVPLFQAQIAAGGPVTVTHP  480
            +VMGA+KR+AE++ Q LN  +S+T F+ VRFGNVLGS GSV+PLF+ QI +GGPVTVTHP
Sbjct  416  NVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHP  475

Query  481  EMTRYFMTIPEACHLITQAAMIGKGGEIFVLDMGESVKIIELAEQMIRLSG-QEPEVEII  539
            EMTRYFMTIPEA +L+ QA+ +++GGE+FVLDMG +VKI++LA ++IRLSG +E ++ I 
Sbjct  476  EMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIE  535

Query  540  YTGLRPGEKLHEELFYAHE  558
            ++G+RPGEKL EEL+  +E
Sbjct  536  FSGIRPGEKLYEELLNKNE  554

363) VF_0197 in NC_006840


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  304 bits (1139),  Expect = 9e-84, Method: Compositional matrix adjust.
 Identities = 216/457 (48%), Positives = 331/457 (73%), Gaps = 26/457 (5%)

Query  122  VMLCGGSRLIVRVLVSDLLGK--QKKKVLIYGAGSAGLQLA-NMLR-QGKEFHPIAFIDD  177
            ++L GGSRL+ RV    ++++  +KK  L+ GAG +G  L  +MLR Q+   +P+  +DD
Sbjct  116  LLLIGGSRLFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDD  175

Query  178  DRKKHKTTM-QGITIYRPKYLE---RLIKKHCISTVLLAVPSASQVQKKVIIESLAKLH-  232
            D++K+K T+ + + +    Y+E    L+KK  I  +++A+P+ SQ ++   I+ + +++ 
Sbjct  176  DKNKQKMTITERVKV--QGYVEDIPELVKKFRIKKIIIAIPTLSQ-KRLNEINKICNIEG  232

Query  233  VEVLTIPNLDDLVNGKLSIGQLKEVSIDDLLGRVAVTPQAELMEANIKDKVVMVTGAGGS  292
            VE++ +PN++D+++G L + +LK V ++DLLGR +V  +  L+  ++ +K ++VTGAGGS
Sbjct  233  VELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGS  292

Query  293  IGSELCRQIILNKPTTLVLFELSEFSLYQIEHELSQIIANQQLSINVVPLLGSVQRLNRL  352
            IGSE+CRQ+    P  ++L+  +E S+Y I++ELS+  +N+   I+ VP+++ VQ   R+
Sbjct  293  IGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNR---IEFVPVIADVQNKTRI  349

Query  353  AATMKAFKVQTVYHAAAYKHVPLVEYNVVEGVRNNIFGTNYAAQAAIEAKVESFVLISTD  412
               M+ FK  +VYHAAA KHVPL+EYN  E++RNNI+GT+  A++A E+ V  FV+ISTD
Sbjct  350  LEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTD  409

Query  413  KAVRPTNVMGTTKRVAELGLQALAQVENAKPNGTRFCMVRFGNVLGSSGSVIPLFKKQIA  472
            KAV P+NVMG+TKR+AE+ +Q+L + +N+K   T F  VRFGNVLGS GSVIPLFK+QI 
Sbjct  410  KAVNPSNVMGATKRIAEMVIQSLNE-DNSK---TSFVAVRFGNVLGSRGSVIPLFKNQIE  465

Query  473  QGGPITLTHKDITRYFMTIPEAAQLVIQAGAMGKGGDVFVLDMGESVKIADLARNLIHLS  532
             GGP+T+TH ++TRYFMTIPEA++LV+QAGA+++GG+VFVLDMG +VKI DLA+NLI+LS
Sbjct  466  SGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLS  525

Query  533  GLEVRSDENPDGDIEIRCTGLRPGEKLYEELLIGDNV  569
            G       + + DI I  +G+RPGEKLYEELL  +++
Sbjct  526  G-------KKEEDIGIEFSGIRPGEKLYEELLNKNEI  555

364) Bcen_0408 in NC_008060


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  303 bits (1136),  Expect = 2e-83, Method: Compositional matrix adjust.
 Identities = 201/446 (46%), Positives = 312/446 (70%), Gaps = 9/446 (2%)

Query  155  AGASLARELSRSGEWRLVGLL--DDDVTKQGREIYG-YKVLGSFNDLKHWTDAMKVEYAI  211
            +G+ L RE+ RS + R+  +L  DDD  KQ   I    KV G  +D+ +     ++   I
Sbjct  151  GGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKII  210

Query  212  IAIPSASVETQRRVATLCVRAGVKAMVLPSLTALMPGQGFLSQVRNIDLEDLLGRDAVTI  271
            IAIP+ S      +  +C   GV    +P++  +++G+  +++++++++EDLLGRD+V +
Sbjct  211  IAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVEL  270

Query  272  DTPHVEALLRGRVVMVTGAGGSIGSELCRQILRFAPAQLVAFDLSEYAMYRLTEELRERF  331
            D + +   L  + ++VTGAGGSIGSE+CRQ+ +F P +++ ++ +E ++Y + +EL   +
Sbjct  271  DMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTY  330

Query  332  PD-LPVVPIIGDAKDSLLLDQVMSRHAPHIVFHAAAYKHVPLMEEHNAWQALRNNVLGTY  390
             + +  VP+I+D ++   + +VM+   P  V+HAAA KHVPLME  N+ +A+RNN+LGT 
Sbjct  331  GNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLME-YNPHEAIRNNILGTK  389

Query  391  RVARAAIRHDVRHFVLISTDKAVNPTNVMGASKRLAEMACQALQQSSGRTQFETVRFGNV  450
             VA +A   +V  FV+ISTDKAVNP+NVMGA+KR+AEM  Q+L++ +++T F +VRFGNV
Sbjct  390  NVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNV  449

Query  451  LGSAGSVIPKFQQQIAKGGPVTVTHPEITRFFMTIPEASQLVLQASSMGHGGEIFILDMG  510
            LGS GSVIP F++QI  GGPVTVTHPE+TR+FMTIPEAS+LVLQA+++++GGE+F+LDMG
Sbjct  450  LGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMG  509

Query  511  EPVKIVDLACDLIRLYGFSEEQIRIEFTGLRPGEKLYEELLADDEATTRTPHPKL---RI  567
             PVKIVDLA +LIRL G  EE+I IEF+G+RPGEKLYEELL  +E   +    K+   ++
Sbjct  510  KPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKV  569

Query  568  AR-AREVPDNFLDELLPWLMQHRVLS  592
             +  +   D ++++L+  + ++++L 
Sbjct  570  DHYIKTEVDLIVEDLINNFSKEKLLK  595

365) Bcen2424_0887 in NC_008542


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  303 bits (1136),  Expect = 2e-83, Method: Compositional matrix adjust.
 Identities = 201/446 (46%), Positives = 312/446 (70%), Gaps = 9/446 (2%)

Query  155  AGASLARELSRSGEWRLVGLL--DDDVTKQGREIYG-YKVLGSFNDLKHWTDAMKVEYAI  211
            +G+ L RE+ RS + R+  +L  DDD  KQ   I    KV G  +D+ +     ++   I
Sbjct  151  GGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKII  210

Query  212  IAIPSASVETQRRVATLCVRAGVKAMVLPSLTALMPGQGFLSQVRNIDLEDLLGRDAVTI  271
            IAIP+ S      +  +C   GV    +P++  +++G+  +++++++++EDLLGRD+V +
Sbjct  211  IAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVEL  270

Query  272  DTPHVEALLRGRVVMVTGAGGSIGSELCRQILRFAPAQLVAFDLSEYAMYRLTEELRERF  331
            D + +   L  + ++VTGAGGSIGSE+CRQ+ +F P +++ ++ +E ++Y + +EL   +
Sbjct  271  DMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTY  330

Query  332  PD-LPVVPIIGDAKDSLLLDQVMSRHAPHIVFHAAAYKHVPLMEEHNAWQALRNNVLGTY  390
             + +  VP+I+D ++   + +VM+   P  V+HAAA KHVPLME  N+ +A+RNN+LGT 
Sbjct  331  GNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLME-YNPHEAIRNNILGTK  389

Query  391  RVARAAIRHDVRHFVLISTDKAVNPTNVMGASKRLAEMACQALQQSSGRTQFETVRFGNV  450
             VA +A   +V  FV+ISTDKAVNP+NVMGA+KR+AEM  Q+L++ +++T F +VRFGNV
Sbjct  390  NVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNV  449

Query  451  LGSAGSVIPKFQQQIAKGGPVTVTHPEITRFFMTIPEASQLVLQASSMGHGGEIFILDMG  510
            LGS GSVIP F++QI  GGPVTVTHPE+TR+FMTIPEAS+LVLQA+++++GGE+F+LDMG
Sbjct  450  LGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMG  509

Query  511  EPVKIVDLACDLIRLYGFSEEQIRIEFTGLRPGEKLYEELLADDEATTRTPHPKL---RI  567
             PVKIVDLA +LIRL G  EE+I IEF+G+RPGEKLYEELL  +E   +    K+   ++
Sbjct  510  KPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKV  569

Query  568  AR-AREVPDNFLDELLPWLMQHRVLS  592
             +  +   D ++++L+  + ++++L 
Sbjct  570  DHYIKTEVDLIVEDLINNFSKEKLLK  595

366) Bcenmc03_0857 in NC_010508


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  303 bits (1136),  Expect = 2e-83, Method: Compositional matrix adjust.
 Identities = 201/446 (46%), Positives = 312/446 (70%), Gaps = 9/446 (2%)

Query  155  AGASLARELSRSGEWRLVGLL--DDDVTKQGREIYG-YKVLGSFNDLKHWTDAMKVEYAI  211
            +G+ L RE+ RS + R+  +L  DDD  KQ   I    KV G  +D+ +     ++   I
Sbjct  151  GGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKII  210

Query  212  IAIPSASVETQRRVATLCVRAGVKAMVLPSLTALMPGQGFLSQVRNIDLEDLLGRDAVTI  271
            IAIP+ S      +  +C   GV    +P++  +++G+  +++++++++EDLLGRD+V +
Sbjct  211  IAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVEL  270

Query  272  DTPHVEALLRGRVVMVTGAGGSIGSELCRQILRFAPAQLVAFDLSEYAMYRLTEELRERF  331
            D + +   L  + ++VTGAGGSIGSE+CRQ+ +F P +++ ++ +E ++Y + +EL   +
Sbjct  271  DMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTY  330

Query  332  PD-LPVVPIIGDAKDSLLLDQVMSRHAPHIVFHAAAYKHVPLMEEHNAWQALRNNVLGTY  390
             + +  VP+I+D ++   + +VM+   P  V+HAAA KHVPLME  N+ +A+RNN+LGT 
Sbjct  331  GNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLME-YNPHEAIRNNILGTK  389

Query  391  RVARAAIRHDVRHFVLISTDKAVNPTNVMGASKRLAEMACQALQQSSGRTQFETVRFGNV  450
             VA +A   +V  FV+ISTDKAVNP+NVMGA+KR+AEM  Q+L++ +++T F +VRFGNV
Sbjct  390  NVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNV  449

Query  451  LGSAGSVIPKFQQQIAKGGPVTVTHPEITRFFMTIPEASQLVLQASSMGHGGEIFILDMG  510
            LGS GSVIP F++QI  GGPVTVTHPE+TR+FMTIPEAS+LVLQA+++++GGE+F+LDMG
Sbjct  450  LGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMG  509

Query  511  EPVKIVDLACDLIRLYGFSEEQIRIEFTGLRPGEKLYEELLADDEATTRTPHPKL---RI  567
             PVKIVDLA +LIRL G  EE+I IEF+G+RPGEKLYEELL  +E   +    K+   ++
Sbjct  510  KPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKV  569

Query  568  AR-AREVPDNFLDELLPWLMQHRVLS  592
             +  +   D ++++L+  + ++++L 
Sbjct  570  DHYIKTEVDLIVEDLINNFSKEKLLK  595

367) NAL212_0301 in NC_015222


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  303 bits (1135),  Expect = 2e-83, Method: Compositional matrix adjust.
 Identities = 219/498 (44%), Positives = 338/498 (68%), Gaps = 30/498 (6%)

Query  120  IMGGSRLIYRAWKE-RRLYSLESYEAKLVLILGAGSTAVNLVKALTGSREWHVVGMLDDD  178
            ++GGSRL+   W+  RR +  ++ E K  L++GAG  +  L++ +  S++ ++  +L  D
Sbjct  118  LIGGSRLF---WRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVD  174

Query  179  PRKLGTRL---QGVRVRGTIKELPQWVQKLNVGHVIIAIPSVSRRIHRQALEMCSEIGVK  235
              K   ++   + V+V+G + ++P+ V+K+ +  +IIAIP++S++   +   +C+  GV 
Sbjct  175  DDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVE  234

Query  236  AMTVPSYADLISGKTTVSQIREIQLDDLLGRAPVVldddglhdllTGKVILVTGAGGSIG  295
               +P+  D++SG   V++++ ++++DLLGR PV LD   +   LT K ILVTGAGGSIG
Sbjct  235  LFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIG  294

Query  296  SELCRQLVSFEPKRIIFVELSEFSLYTIQEEFLARYPAMNMSF--VIGDIKDHARMIQLF  353
            SE+CRQ+  F+P++II++  +E S+Y+I++E+   Y    + F  VI+D+++ +R++++ 
Sbjct  295  SEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGN-RIEFVPVIADVQNKTRILEVM  353

Query  354  TQFHPTVVFHAAAYKHVPLMEQENACQAILNNVLGTYVLAQVAINFAVDKFVLISTDKAV  413
             +F P  V+HAAA KHVPLME  N+ +AI NN+LGT  +A+ A +  V KFV+ISTDKAV
Sbjct  354  NEFKPYAVYHAAAHKHVPLMEY-NPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAV  412

Query  414  NPVSVMGASKRLAEMVCQALQQSISKHLNADRNYPSRQTCFVMVRFGNVLGSTGSVIPKF  473
            NP +VMGA+KR+AEMV Q+L++  SK            T FV VRFGNVLGS GSVIP F
Sbjct  413  NPSNVMGATKRIAEMVIQSLNEDNSK------------TSFVAVRFGNVLGSRGSVIPLF  460

Query  474  REQIAKGGPITITHPDMTRYFMSIPEAAQLVLQAglmggtqgggEIFVLDMGDPVKIVDL  533
            ++QI  GGP+T+THP+MTRYFM+IPEA++LVLQA   G+   GGE+FVLDMG PVKIVDL
Sbjct  461  KNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQA---GALAQGGEVFVLDMGKPVKIVDL  517

Query  534  ANDLIHLSGLAEGDIRIEFTGLRPGEKIHEELLATSESTLPTPHQKL---RIAQACQVDE  590
            A++LI+LSG  E DI IEF+G+RPGEK+ EELL  +E       +K+   ++ +  + + 
Sbjct  518  AKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEV  577

Query  591  QWL-SELVAWLDKVTVLS  607
            + +  +L+  + K  +L 
Sbjct  578  DLIVEDLINNFSKEKLLK  595

368) wbiI in NC_011000


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  302 bits (1133),  Expect = 3e-83, Method: Compositional matrix adjust.
 Identities = 199/446 (45%), Positives = 312/446 (70%), Gaps = 9/446 (2%)

Query  155  AGASLARELSRSGEWRLVGLL--DDDVTKQGREIYG-YKVLGSFNDLKHWTDAMKVEYAI  211
            +G+ L RE+ RS + R+  +L  DDD  KQ   I    KV G  +D+ +     ++   I
Sbjct  151  GGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKII  210

Query  212  IAIPSASVETQRRVATLCVRAGVKAMVLPSLTALMPGQGFLSQVRNIDLEDLLGREAVTI  271
            IAIP+ S      +  +C   GV    +P++  +++G+  +++++++++EDLLGR++V +
Sbjct  211  IAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVEL  270

Query  272  DTPHVEALLRGRVVMVTGAGGSIGSELCRQILRFAPAQLVAFDLSEYAMYRLTEELRERF  331
            D + +   L  + ++VTGAGGSIGSE+CRQ+ +F P +++ ++ +E ++Y + +EL   +
Sbjct  271  DMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTY  330

Query  332  PD-LPVLPIIGDAKDSLLLDQVMSRHAPHIVFHAAAYKHVPLMEEHNAWQALRNNVLGTY  390
             + +  +P+I+D ++   + +VM+   P  V+HAAA KHVPLME  N+ +A+RNN+LGT 
Sbjct  331  GNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLME-YNPHEAIRNNILGTK  389

Query  391  RVARAAIRHDVRHFVLISTDKAVNPTNVMGASKRLAEMACQALQQTSGRTQFETVRFGNV  450
             VA +A   +V  FV+ISTDKAVNP+NVMGA+KR+AEM  Q+L++ +++T F +VRFGNV
Sbjct  390  NVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNV  449

Query  451  LGSAGSVIPKFQQQIAKGGPVTVTHPEITRFFMTIPEASQLVLQASSMGHGGEIFILDMG  510
            LGS GSVIP F++QI  GGPVTVTHPE+TR+FMTIPEAS+LVLQA+++++GGE+F+LDMG
Sbjct  450  LGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMG  509

Query  511  EPVKIVDLACDLIRLYGFSEEQIRIEFTGLRPGEKLYEELLADDEATTRTPHPKL---RI  567
             PVKIVDLA +LIRL G  EE+I IEF+G+RPGEKLYEELL  +E   +    K+   ++
Sbjct  510  KPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKV  569

Query  568  AR-AREVPDNFLDELLPWLMQHRVLS  592
             +  +   D ++++L+  + ++++L 
Sbjct  570  DHYIKTEVDLIVEDLINNFSKEKLLK  595

369) Elen_2347 in NC_013204


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  302 bits (1130),  Expect = 4e-83, Method: Compositional matrix adjust.
 Identities = 232/501 (47%), Positives = 346/501 (70%), Gaps = 11/501 (2%)

Query  60   LFHLYNNLWEYASVDEAIQIVLAVVLSTLVGAVFLWIIDVRLP-IRVFFVSCFMLIFFMG  118
            +F+LY+  WEYASV E + ++ AV  S +V  +++ ++    P +R++F++  M ++++G
Sbjct  61   VFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIG  120

Query  119  GIRLIFRVMRQKRRALVSTQRACDRPRTLVVGAGETGSLAIGRMASKDPLMPGIPIVATD  178
            G RL+ RV R   R ++    A ++  TLVVGAG+ GS+ I  M   +  M   P++A D
Sbjct  121  GSRLFWRVYR---RYFIDN--AVEKKATLVVGAGQGGSVLIREMLRSQD-MRMQPVLAVD  174

Query  179  DDPTKRGSRIHG-VRVAGSTDDIVDLVDKHNIDQIVVAIPSSTPEERKRIYGECTKTDCK  237
            DD  K+   I   V+V G  +DI +LV K  I +I++AIP+ +    + I   C   +  
Sbjct  175  DDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVE  234

Query  238  LRTLPNVRELSLDEIgdvrlrdvdvadllgrEEIILNTRAVSGYIAGETVLVTGGGGSIG  297
            L  +PN+ ++  +E+    L+ V+V DLLGR+ + L+   +S  ++  T+LVTG+GGSIG
Sbjct  235  LFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIG  294

Query  298  SELCRQLCKVAPARIVIFDMYENDAYMLRNELLAEYDD-IDLVIEIGNVCDEARLNEVFA  356
            SE+CRQ+ K  P +I++++  EN  Y +++EL   Y++ I++V  I++V + +R+ EV  
Sbjct  295  SEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMN  354

Query  357  KYRPGAVFHAAAHKHVPLMEQCPREALHNNVFGTLNavraadaygaaRFIFISTDKAVNP  416
             ++P AV+HAAAHKHVPLME  P+EA++NN++GT N   +A     ++F+ ISTDKAVNP
Sbjct  355  EFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNP  414

Query  417  TSVMGATKRMGEMVMQ-YYARTSKTIFSAVRFGNVLGSNGSVIPVFQRQIAAGGPLTVTH  475
            ++VMGATKR++EMV+Q      SKT F AVRFGNVLGS GSVIP+F+ QI +GGP+TVTH
Sbjct  415  SNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTH  474

Query  476  PDIERFFMTIPEASRLVIQAGGMAKGGEIFILDMGEPVKIVDLAKGLIQLQGLTPDVDVK  535
            P++ R+FMTIPEASRLV+QAG++A+GGE+F+LDMG PVKIVDLAK LI+L G   + D+ 
Sbjct  475  PEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIG  533

Query  536  IVFTGLREGEKMYEELLMDEE  556
            I F+G+R GEK+YEELL  +E
Sbjct  534  IEFSGIRPGEKLYEELLNKNE  554

370) Swoo_1680 in NC_010506


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  302 bits (1131),  Expect = 4e-83, Method: Compositional matrix adjust.
 Identities = 219/482 (46%), Positives = 340/482 (71%), Gaps = 23/482 (4%)

Query  121  LVLIGGSR----GVIRAAVGSGMKREGEPVIIYGAGVSGRQLVTALVQSHEY--YPFAFV  174
            L+LIGGSR       R  +++++ + +  V+  GAG +G  L+  +++S++    P   V
Sbjct  116  LLLIGGSRLFWRVYRRYFIDNAVEKKATLVV--GAGQGGSVLIREMLRSQDMRMQPVLAV  173

Query  175  DDDVTTHG-SVIQGVHVHS-PSIVRKLIKQKQATKVLLAIPSASRQRRKEILLSLEPLAV  232
            DDD   +  ++ + V V++    +  L+K+ +  K+++AIP+ S++R +EI    +  +V
Sbjct  174  DDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGV  233

Query  233  QVLTLPAMADLVSGNKLYSDIKEVEIDDLLGRDAVSPREDLLKDNITDKVVMVTGAGGSI  292
            +++ +P + D++SG+   +++K VE++DLLGRD+V     L+  ++T+K ++VTGAGGSI
Sbjct  234  ELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSI  293

Query  293  GSELCRQILKQRPSKLVLFELSEFGLYSIEKELSATAIENGLDVEIFPMLGSVQRENRVQ  352
            GSE+CRQ+ K  P K++L+  +E ++YSI++ELS T    G  +E+ P+++ VQ   R+ 
Sbjct  294  GSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKT---YGNRIEFVPVIADVQNKTRIL  350

Query  353  AVMESFQVQTVYHAAAYKHVPLVEHNVVEGVRNNVFGTMYTARAAIAAKVETFVLISTDK  412
             VM+ F+  +VYHAAA KHVPL+E N  E++RNN++GT   A +A  + V  FV+ISTDK
Sbjct  351  EVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDK  410

Query  413  AVRPTNVMGTTKRMAELSLQALAKESHATRFCMVRFGNVLGSSGSVVPLFRKQIASGGPV  472
            AV P+NVMG+TKR+AE+ +Q+L  ++  T F  VRFGNVLGS GSV+PLF++QI SGGPV
Sbjct  411  AVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPV  470

Query  473  TVTHPEITRFFMTIPEASQLVIQAGAMGKGGDVFVLDMGESVKIVDLAAKMIRLSGFEVQ  532
            TVTHPE+TR+FMTIPEAS+LV+QAGA+++GG+VFVLDMG +VKIVDLA ++IRLSG    
Sbjct  471  TVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG----  526

Query  533  DSINPDGDISIEFSGLRPGEKLYEELLIGDDVTGTE-HERIMTAN-EAYLSWDELEVILS  590
               + + DI+IEFSG+RPGEKLYEELL  +++   +  E+I  ++ + Y+   E+++I+ 
Sbjct  527  ---KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIK-TEVDLIVE  582

Query  591  KL  592
             L
Sbjct  583  DL  584

371) Sden_2645 in NC_007954


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  302 bits (1130),  Expect = 5e-83, Method: Compositional matrix adjust.
 Identities = 215/511 (43%), Positives = 352/511 (69%), Gaps = 23/511 (4%)

Query  73   FGLYRAVLRYMGLQALTAILLGVIISTIALVLIAYYTDAQLPRTVPIIYAAF--ALVFVG  130
            F LY+    Y ++  L ++L +V  S +  +L+     ++ P  + + + +    L+++G
Sbjct  62   FNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESP-FLRLYFITWMMHLLLIG  120

Query  131  GTRAM----VRSLVGSGMKRNGEPVIIYGAGVSGRQLVMALVQSHEY--YPFAFVDDDEA  184
            G+R       R ++++++ +++  V+  GAG +G  L+  +++S++    P   VDDD  
Sbjct  121  GSRLFWRVYRRYFIDNAVEKKATLVV--GAGQGGSVLIREMLRSQDMRMQPVLAVDDDKN  178

Query  185  VQG-SVIQGVHVHS-PSIIKKLIKQKAATKVLLAIPSASRSRRQEILLQLEPLSVQVLTL  242
             Q  ++ + V V++    I  L+K+    K+++AIP+ S+ R +EI    +  +V+++ +
Sbjct  179  KQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKM  238

Query  243  PAMADLVSGNKLYSDIKEVEIDDLLGRDSVTPRQDLLTANIKDKVVMVTGAGGSIGSELC  302
            P + D++SG+   +++K VE++DLLGRD+V     L++ ++ +K ++VTGAGGSIGSE+C
Sbjct  239  PNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEIC  298

Query  303  RQILKQAPKKLVLFELSEFALYAIESELTATAIELGLTVRILPMMGSVQKENRVQAVMEA  362
            RQ+ K  P+K++L+  +E ++Y+I+ EL+ T    G  + ++P+++ VQ+  R+  VM+ 
Sbjct  299  RQVSKFDPQKIILLGHGENSIYSIHQELSKT---YGNRIEFVPVIADVQNKTRILEVMNE  355

Query  363  FGVQTVYHAAAYKHVPLVEHNVVEGVRNNVFGTLYTARAAIKAKVETFVLVSTDKAVRPT  422
            F   +VYHAAA KHVPL+E N  E++RNN++GT   A +A  + V  FV++STDKAV P+
Sbjct  356  FKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPS  415

Query  423  NVMGTTKRMAELVLQAFAKEKHSTRFCMVRFGNVLGSSGSVVPLFRKQIANGGPVTVTHP  482
            NVMG+TKR+AE+V+Q++  ++  T F  VRFGNVLGS GSV+PLF++QI +GGPVTVTHP
Sbjct  416  NVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHP  475

Query  483  EITRFFMTIPEASQLVIQAGAMGKGGDVFVLDMGKSVKIVDLATKMIRLSGFEVKNELNP  542
            E+TR+FMTIPEAS+LV+QAGA+++GG+VFVLDMGK+VKIVDLA ++IRLSG       + 
Sbjct  476  EMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-------KK  528

Query  543  DGDVAIEFTGLRPGEKLYEELLIGDDVTGTE  573
            + D++IEF+G+RPGEKLYEELL  +++   +
Sbjct  529  EEDIGIEFSGIRPGEKLYEELLNKNEIHPQQ  559

372) VFMJ11_0189 in NC_011184


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  301 bits (1126),  Expect = 1e-82, Method: Compositional matrix adjust.
 Identities = 217/457 (48%), Positives = 330/457 (73%), Gaps = 26/457 (5%)

Query  122  VMLCGGSRLIVRVLVSDLLGK--QKKKVLIYGAGSAGLQLA-NMLR-QGKEFHPVAFIDD  177
            ++L GGSRL+ RV    ++++  +KK  L+ GAG +G  L  +MLR Q+   +PV  +DD
Sbjct  116  LLLIGGSRLFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDD  175

Query  178  DRKKHKTTM-QGITIYRPKYLE---RLIKKYCISTVLLAVPSASQVQKKIVIESLAKLH-  232
            D++K+K T+ + + +    Y+E    L+KK+ I  +++A+P+ SQ ++   I+ + +++ 
Sbjct  176  DKNKQKMTITERVKV--QGYVEDIPELVKKFRIKKIIIAIPTLSQ-KRLNEINKICNIEG  232

Query  233  VEVLTIPNLDDLVNGKLSIGQLKEVSIDDLLGRVAVTPQAELMEANIKDKVVMVTGAGGS  292
            VE++ +PN++D+++G L + +LK V ++DLLGR +V  +  L+  ++ +K ++VTGAGGS
Sbjct  233  VELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGS  292

Query  293  IGSELCRQIILNKPSTLVLFELSEFSLYQIEHELSQIIINEQLSINVVPLLGSVQRLNRL  352
            IGSE+CRQ+    P  ++L+  +E S+Y I++ELS+   N    I+ VP+++ VQ   R+
Sbjct  293  IGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGN---RIEFVPVIADVQNKTRI  349

Query  353  AATMKAFKVQTVYHAAAYKHVPLVEYNVVEGVRNNIFGTNYTAQAAIEAKVESFVLISTD  412
               M+ FK  +VYHAAA KHVPL+EYN  E++RNNI+GT+  A++A E+ V  FV+ISTD
Sbjct  350  LEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTD  409

Query  413  KAVRPTNVMGTTKRMAELGLQALAQVENAKPNGTRFCMVRFGNVLGSSGSVIPLFKKQIA  472
            KAV P+NVMG+TKR+AE+ +Q+L + +N+K   T F  VRFGNVLGS GSVIPLFK+QI 
Sbjct  410  KAVNPSNVMGATKRIAEMVIQSLNE-DNSK---TSFVAVRFGNVLGSRGSVIPLFKNQIE  465

Query  473  QGGPITLTHKDITRYFMTIPEAAQLVIQAGAMGKGGDVFVLDMGESVKIADLARNLIHLS  532
             GGP+T+TH ++TRYFMTIPEA++LV+QAGA+++GG+VFVLDMG +VKI DLA+NLI+LS
Sbjct  466  SGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLS  525

Query  533  GLEVRSDENPDGDIEIRCTGLRPGEKLYEELLIGDNV  569
            G       + + DI I  +G+RPGEKLYEELL  +++
Sbjct  526  G-------KKEEDIGIEFSGIRPGEKLYEELLNKNEI  555

373) PSHAa0401 in NC_007481


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  301 bits (1129),  Expect = 5e-83, Method: Compositional matrix adjust.
 Identities = 212/505 (42%), Positives = 353/505 (70%), Gaps = 30/505 (5%)

Query  115  FIFAWL-CLLTVGGSRI---IVRALIGRMTTSNKDAVIIYGAGSSGRQLATALNAGPEYF  170
            ++++W+  LL +GGSR+   + R  +   +  +K ++++ GAG +G  L   +  + +  
Sbjct  108  YFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEKKATLVV-GAGQGGSVLIREMLRSQDMR  166

Query  171  VSAF--IDDDVTKHG-SIIQGIPVRAF-NDIHALIKKRKATKVLLAMPSETRARRKEV--  224
            + +   +DDD  K+  +I + + V+++ +DI  L+KK +  K+++A+P+ ++ R +E+  
Sbjct  167  MQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINK  226

Query  225  LAQLEPLTIKVLSIPGMADIVEGKAKLSEFRDVEIEDLLGRDPVTPKDDLMTVNITDKVV  284
            + ++E   + ++ +P + D++ G   +++++ VE+EDLLGRDPV     L++ ++T+K +
Sbjct  227  ICNIE--GVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTI  284

Query  285  MVTGAGGSIGSELCRQIIKLKPTKLVLFERSEIALYSIEKELGEYIISNTLNIELIPIMG  344
            +VTGAGGSIGSE+CRQ+ K+ P K++L+ ++E ++YSI++EL+    +    IE++P+++
Sbjct  285  LVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSK---TYGNRIEFVPVIA  341

Query  345  SVQRVNRLETVMRTFGVRTIYHAAAYKHVPLVEHNVVEGVRNNVFGTyyaakaaveakvD  404
             VQ   R+  VM  F   ++YHAAA KHVPL+E N  E++RNN++GT   A +A E+ V 
Sbjct  342  DVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVS  401

Query  405  TFVLISTDKAVRPTNIMGATKRMAELVLQGLAQEQGAKHKTRFCMVRFGNVLGSSGSVVP  464
             FV+ISTDKAV P+N+MGATKR+AE+V+Q+L ++++   KT F  VRFGNVLGS GSV+P
Sbjct  402  KFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNS---KTSFVAVRFGNVLGSRGSVIP  458

Query  465  LFRRQIKEGGPITLTHPDITRYFMTIPEAAQLVIQAGAMGKGGDVFVLDMGDSVKISDLA  524
            LF+ QI  GGP+T+THP++TRYFMTIPEA++LV+QAGA+++GG+VFVLDMG +VKI DLA
Sbjct  459  LFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLA  518

Query  525  TKMVRLSGLEIKTDDTPHGDIEIKCTGLRPGEKLYEELLIGDNVE-QTSHERIMTAKEVM  583
             +++RLSG   K ++    DI I  +G+RPGEKLYEELL  ++++ Q   E+I  +K   
Sbjct  519  KNLIRLSG---KKEE----DIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDH  571

Query  584  LPLSELNVFIEALDIACHDFNHETI  608
               +E+++++E L    ++F+ E +
Sbjct  572  YIKTEVDLIVEDL---INNFSKEKL  593

374) wbpM in NC_021499


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  301 bits (1127),  Expect = 8e-83, Method: Compositional matrix adjust.
 Identities = 215/531 (41%), Positives = 349/531 (66%), Gaps = 56/531 (10%)

Query  117  FNYWWLSLVLIGGLRL---AIRQYFLGDWYVASQAIPFGPKDNGLPRVAIYGAGAAGNQL  173
            F  W + L+LIGG RL     R+YF+++      A+    K   L    + GAG +G+ L
Sbjct  109  FITWMMHLLLIGGSRLFWRVYRRYFIDN------AVE---KKATL----VVGAGQGGSVL  155

Query  174  VTALRMGRAMR--PVAFIDDDSSIATRTISG---LQVYKPKHIQQMIDQTGAQEVLLAIP  228
            +  +  ++ MR  PV  +DDD +    TI+    +Q Y   +I +++ +   + +++AIP
Sbjct  156  IREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGY-VEDIPELVKKFRIKKIIIAIP  214

Query  229  SATRVRRREI--LATLEGYPLHVRSVPGFMDLASGRVKVDDIQEVDIADLLGRDAVPPRK  286
            + ++ R  EI  +  +EG  L    +P + D+ SG + V++++ V++ DLLGRD+V    
Sbjct  215  TLSQKRLNEINKICNIEGVELF--KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDM  272

Query  287  ELFERCIQSKVVMVTGAGGSIGSELCRQILGCGPKTLILFEHSEFNLYNIQIELERRIAR  346
             L+ R + +K ++VTGAGGSIGSE+CRQ+   +P+ +IL+ H+E ++Y+I+ EL +  + 
Sbjct  273  ALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYG-  331

Query  347  ESQSVQLIPILGSVRNLARLVDVMRTWDVDTVYHAAAYKHVPIVEHNIAEGVLNNVMGTL  406
              + ++++P+++ V+N +R+++VM      +VYHAAA KHVP++E N  E++ NN++GT 
Sbjct  332  --NRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTK  389

Query  407  YTAQAAVQAGVENFVLISTDKAVRPTNVMGSTKRLSEMTLQALSRESAPVMYGDSEAVHR  466
              A++A ++ V +FV+ISTDKAV P+NVMG+TKR++EM +Q+L+ +++            
Sbjct  390  NVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNS------------  437

Query  467  VNKTRFTMVRFGNVLGSSGSVIPLFREQIKRGGPITVTHPNITRYFMTIPEAAQLVIQAG  526
              KT F  VRFGNVLGS GSVIPLF++QI  GGP+TVTHP++TRYFMTIPEA++LV+QAG
Sbjct  438  --KTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAG  495

Query  527  SMGQGGDVFVLDMGQPVKIAELAEKMVHLSGLTVRSERNPSGDISIEFTGLRPGEKLYEE  586
            +++QGG+VFVLDMG+PVKI +LA ++++LSG       +   DI+IEF+G+RPGEKLYEE
Sbjct  496  ALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-------KKEEDIGIEFSGIRPGEKLYEE  548

Query  587  LLIGDNVSPTE-HPMIMRANEEHLSWDVYKRVLAELFVAVEKDDYVRVRQL  636
            LL  +++ P +    I R++ +H     Y +   +L+V    +++ + + L
Sbjct  549  LLNKNEIHPQQVYEKIYRGKVDH-----YIKTEVDLIVEDLINNFSKEKLL  594

375) Patl_4002 in NC_008228


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  300 bits (1124),  Expect = 1e-82, Method: Compositional matrix adjust.
 Identities = 207/450 (46%), Positives = 320/450 (72%), Gaps = 30/450 (6%)

Query  120  MFLIVAPRLLIQTTVQTQNYKIREKCIIFGASQAGRSLAQTLRTGNDL--LPVAFVDDKK  177
            +F  V  R +I+ +V+      +   ++ GA+Q+G  L + +  ++D+   PV  VDD K
Sbjct  124  LFWRVYRRYFIDNAVE------KKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDK  177

Query  178  LFQGKQVMGL------QVFAREDIPELVRKYGVNKMLLAVNNSSHGRRKEL--IAELEPF  229
                KQ M +      Q +  EDIPELV+K+ ++K+++A+   S+ R +E+  I ++E  
Sbjct  178  ---NKQKMTITERVKVQGYV-EDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIE--  231

Query  230  AIELLSIPNIQDILSGKRKIDELREIKIEELLGREPVPPIVELLDTNIRRKRVMVTGAGG  289
            ++EL+ +PNI+D+LSG   +++L+ + +E+LLGR+PV   + L+  ++  K ++VTGAGG
Sbjct  232  GVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGG  291

Query  290  SIGSELCRQIAMSNPESLILFELSEFNLYQIEGELSKLYPD-IKIVPILASIQDNEILRS  348
            SIGSE+CRQ++  +P+ +IL+  +E ++Y I+ ELSK Y + I +VP++A +Q++  +  
Sbjct  292  SIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILE  351

Query  349  AIDAHKIQTIYHAAAYKHVPMVESNPLAGLRNNVFGTANVALAAIEFDVEKFVLISTDKA  408
             ++  K  ++YHAAA KHVP++E NP  ++RNN++GT NVA +A E +V KFV+ISTDKA
Sbjct  352  VMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKA  411

Query  409  VRPTNVMGATKRFAELIVQGIADLESSTQFAIVRFGNVLGSSGSVVPLFTRQIQAGGPIT  468
            V P+NVMGATKR+AE+++Q++ + +S T F  VRFGNVLGS GSV+PLF  QI++GGP+T
Sbjct  412  VNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVT  471

Query  469  VTHPDIIRFFMTIPEAAQLVIQAGAMGKKGEVFVLDMGDPVKIVDLAQKMAHLMGHTLKT  528
            VTHP++ R+FMTIPEA++LV+QAGA+++ GEVFVLDMG PVKIVDLA+++ +L G     
Sbjct  472  VTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKK---  528

Query  529  ETQPDGNIELKFSGLRPGEKLYEELLIDDA  558
                + +I + FSG+RPGEKLYEELL  + 
Sbjct  529  ----EEDIGIEFSGIRPGEKLYEELLNKNE  554

376) PSEBR_a1571 in NC_015379


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  300 bits (1123),  Expect = 1e-82, Method: Compositional matrix adjust.
 Identities = 213/491 (44%), Positives = 339/491 (70%), Gaps = 50/491 (10%)

Query  119  FNYWWLSLVMIGGLRLF---MRQYFMGDWFIPSRHAPFINRNASLTKVAIYGAGAAGNQL  175
            F  W + L++IGG RLF    R+YF+++          ++++A+L    + GAG +G+ L
Sbjct  109  FITWMMHLLLIGGSRLFWRVYRRYFIDNA---------VEKKATL----VVGAGQGGSVL  155

Query  176  VAALRIGRDM--QPVAFIDDDASIANRMISG---LQVFKAKHIQKMIRLTGAQEVLLAVP  230
            +  +  ++DM  QPV  +DDD +  +  I+    +Q +   +I  +++    + +++A+P
Sbjct  156  IREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGY-VEDIPELVKKFRIKKIIIAIP  214

Query  231  SASRARRREI--LGYLEGYPLHVRSVPGFMDLASGRVKVDDIQEVDIADLLGRDAVPAQP  288
            + S+ R  EI  +  +EG  L    +P + D+ SG + V++++ V++ DLLGRD+V  + 
Sbjct  215  TLSQKRLNEINKICNIEGVELF--KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDM  272

Query  289  ELLSRCIRGKVVLVTGAGGSIGSELCRQILALQPSTLLLFDHSEFNLYSILSELEETIVR  348
             L+SR +  K +LVTGAGGSIGSE+CRQ+  ++P  ++L++H+E ++YSI  EL  T   
Sbjct  273  ALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGN  332

Query  349  QSIAVNLLPILGSVRNATKLFDVMKSWSVETVYHAAAYKHVPLVEHNIAEGMLNNVIGTL  408
            +   ++++P+++ V+N T++++VM+     +VYHAAA KHVPL+E N  E++ NN++GT 
Sbjct  333  R---IEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTK  389

Query  409  NTAQAALKAQVENFVLISTDKAVRPTNVMGSTKRLAEMVLQALSHELAPVLFADSGNVAR  468
            N A++A  ++V +FV+ISTDKAV P+NVMG+TKR+AEMV+Q+L+++              
Sbjct  390  NVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNED--------------  435

Query  469  VNKTRFVMVRFGNVLGSSGSVIPRFRQQIKSGGPITVTHPNITRYFMTIPEAAQLVIQAG  528
             +KT FV VRFGNVLGS GSVIP F++QI SGGP+TVTHP++TRYFMTIPEA++LV+QAG
Sbjct  436  NSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAG  495

Query  529  SMGRGGDVFVLDMGEPVKIAELAEKMVHLSGLNVCSEKNVHGDIAIEFTGLRPGEKLYEE  588
            ++++GG+VFVLDMG PVKI +LA ++++LSG       + + DI+IEF+G+RPGEKLYEE
Sbjct  496  ALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-------KKEEDIGIEFSGIRPGEKLYEE  548

Query  589  LLIGDNVVATQ  599
            LL  +++ + Q
Sbjct  549  LLNKNEIHPQQ  559

377) Rleg_6005 in NC_012852


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  300 bits (1125),  Expect = 1e-82, Method: Compositional matrix adjust.
 Identities = 203/500 (41%), Positives = 339/500 (68%), Gaps = 29/500 (5%)

Query  124  LIAIGLSRLSIRYWLGDAYQRILHKNTLAK--VLIYGAGKAGRQLAGALINSAELNVVGY  181
            L+ IG SRL   +W    Y+R +  N++ K   L+ GAG++G  L   ++ S ++ +   
Sbjct  116  LLLIGGSRL---FW--RVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPV  170

Query  182  L---DDDPRLKGGVMGGLPI--YDPSDLPVLAESLGVHNVLLALPSASRQRRNEILEHIR  236
            L   DD  + K  +   + +  Y   D+P L   + + ++++A+P+ S++R NEI     
Sbjct  171  LAVDDDKNKQKMTITERVKVQGY-VEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICN  229

Query  237  KARVNVRTLPDLTALAQGRIAVSDIRELEIEDLLGREAVAPRQELLDKAMRKKVVMVTGA  296
               V++  +P++  +  G + V++++ +E+EDLLGR++V     L+ + + +K ++VTGA
Sbjct  230  IEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGA  289

Query  297  GGSIGGELCRQILRNEPSSLILIDQNEFALYNIHAELQKLAELYKHENTQIVPILCSVRD  356
            GGSIG+E+CRQ+ + +P  +IL+++ E ++Y+IH EL K    Y +   ++VP++  V++
Sbjct  290  GGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKT---YGN-RIEFVPVIADVQN  345

Query  357  QDRMEHVMQSWRPQTLYHAAAYKHVPLVEHNAVEGIKNNVMGTLVAARAANKCGVSNFVL  416
            + R+ +VM+  +P ++YHAAA KHVPL+E N+ E+I+NN++GT   A +A+   VS+FV+
Sbjct  346  KTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVM  405

Query  417  ISTDKAVRPTNVMGASKRLAEMVLQALAAESATDRMRTNFSMVRFGNVLGSSGSVVPLFR  476
            ISTDKAV P+NVMGA+KR+AEMV+Q+L  +++    +T+F  VRFGNVLGS GSV+PLF+
Sbjct  406  ISTDKAVNPSNVMGATKRIAEMVIQSLNEDNS----KTSFVAVRFGNVLGSRGSVIPLFK  461

Query  477  QQIKEGGPVTLTHPDITRYFMTISEASQLVIQAGAMADGGDVFLLDMGEPVRIADLARKM  536
            +QI  GGPVT+THP++TRYFMTI+EAS+LV+QAGA+A+GG+VF+LDMG PV+I DLA+++
Sbjct  462  NQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNL  521

Query  537  VELSGLAVRDENNPEGDIELSVTGLRPGEKLYEELLIGDNPERTE-HPRIMKAREDFLFW  595
            + LSG       + E DI +  +G+RPGEKLYEELL  ++ +  +   +I +++ D  + 
Sbjct  522  IRLSG-------KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIK  574

Query  596  SELSKKLNSLNAVLDRNDMV  615
            +E+   ++ L   + ++ ++
Sbjct  575  TEVDLIVEDLINNFSKEKLL  594

378) Calkr_2286 in NC_014721


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  299 bits (1122),  Expect = 2e-82, Method: Compositional matrix adjust.
 Identities = 235/529 (45%), Positives = 360/529 (69%), Gaps = 17/529 (3%)

Query  75   YKIIWRYATTNELIRLLLVVLIGSSLASFIIYIVNLRIP-RSIYLLSYVLITISLLVSRI  133
            Y   W YA+ +EL+ +L  V  +  ++ +++ ++    P   +Y+++ ++  + +  SR+
Sbjct  65   YHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRL  124

Query  134  IY-MYINEKRKKFQSYKIERQKRALIIGAGSAGQLILNELKKHSEVGILPVAFLDDDENK  192
            +  +Y    R+ F    +E+ K +L++GAG +G +++ E+ +  ++ + PV  +DDD NK
Sbjct  125  FWRVY----RRYFIDNAVEK-KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNK  179

Query  193  HYRYING-VIVLGKIEELPYVVEEKSIDLVIYAIPSAHPSLLRKVLNLCNKAKVELRTIP  251
            +   I   V V G +E++P +V    I  +I AIP+     L  + ++CN   VEL  +P
Sbjct  180  QKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMP  239

Query  252  GVYELIRNPSALNVRNIRKVNLEDLLRREPIKIDLKDISEFLVNKRVLVTGAGGSIGSEI  311
             + +++  ++ L+V N++KV++EDLL R+P+ +D+  IS  L NK +LVTGAGGSIGSEI
Sbjct  240  NIEDVL--SGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEI  297

Query  312  VRQVLRFEPAEVICLDIYENTLYDLQQELINTPYISKCKFL--IGSIRDINRLENIFKQY  369
             RQV +F+P  +I L+  EN++Y ++QEL +T Y ++  F+  I+ +++  R+ ++ +++
Sbjct  298  CRQVSKFDPQKIILLGHGENSIYSIHQELSKT-YGNRIEFVPVIADVQNKTRILEVMNEF  356

Query  370  KPEIVFHAAAHKHVPLMEDSPQEAVKNNIFGTLNLVEISDKYNIKKFIMISTDKAVNPKS  429
            KP  V+HAAAHKHVPLME +P+EA++NNI+GT N+ E +   ++ KF+MISTDKAVNP +
Sbjct  357  KPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSN  416

Query  430  VMGMTKRICELLVQAYN-SKSDTEFSIVRFGNVLGSNGSVVPLFMKQIEKGGPVTVTHEE  488
            VMG TKRI E+++Q+ N  +S T F  VRFGNVLGS GSV+PLF +QIE GGPVTVTH E
Sbjct  417  VMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPE  476

Query  489  VRRYFMTINEavqlvlqaaaFAKGGEVFVLDMGEPVKIIDLARDLIRIYGYEPDVDIKIE  548
            + RYFMTI EA +LVLQA+A+A+GGEVFVLDMG PVKI+DLA++LIR+ G   + DI IE
Sbjct  477  MTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIGIE  535

Query  549  IIGLRPGEKLYEELLIDKENCIATKNDKIWVEKT--YNSANVEYILEAL  595
            + G+RPGEKLYEELL  +E       +KI   K   Y  ++V+ I+E L
Sbjct  536  FSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDL  584

379) Calla_0167 in NC_015949


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  299 bits (1121),  Expect = 2e-82, Method: Compositional matrix adjust.
 Identities = 235/529 (45%), Positives = 360/529 (69%), Gaps = 17/529 (3%)

Query  63   YKIIWRYATTNELIRLLLVVLIGSSLASFIIYIVNLRIP-RSIYLLSYVLITISLLVSRI  121
            Y   W YA+ +EL+ +L  V  +  ++ +++ ++    P   +Y+++ ++  + +  SR+
Sbjct  65   YHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGSRL  124

Query  122  IY-MYINEKRKKFQSYKIERQKRALIIGAGSAGQLILNELKKHSEVGILPVAFLDDDENK  180
            +  +Y    R+ F    +E+ K +L++GAG +G +++ E+ +  ++ + PV  +DDD NK
Sbjct  125  FWRVY----RRYFIDNAVEK-KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNK  179

Query  181  HYRYING-VIVLGKIEELPYVVEEKSIDLVIYAIPSAHPSLLRKVLNLCNKAKVELRTIP  239
            +   I   V V G +E++P +V    I  +I AIP+     L  + ++CN   VEL  +P
Sbjct  180  QKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMP  239

Query  240  GVYELIRNPSALNVRNIRKVNLEDLLRREPIKIDLKDISEFLVNKRVLVTGAGGSIGSEI  299
             + +++  ++ L+V N++KV++EDLL R+P+ +D+  IS  L NK +LVTGAGGSIGSEI
Sbjct  240  NIEDVL--SGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEI  297

Query  300  VRQVLRFEPAEVICLDIYENTLYDLQQELINTPYISKCKFL--IGSIRDINRLENIFKQY  357
             RQV +F+P  +I L+  EN++Y ++QEL +T Y ++  F+  I+ +++  R+ ++ +++
Sbjct  298  CRQVSKFDPQKIILLGHGENSIYSIHQELSKT-YGNRIEFVPVIADVQNKTRILEVMNEF  356

Query  358  KPEIVFHAAAHKHVPLMEDSPQEAVKNNIFGTLNLVEISDKYNIKKFIMISTDKAVNPKS  417
            KP  V+HAAAHKHVPLME +P+EA++NNI+GT N+ E +   ++ KF+MISTDKAVNP +
Sbjct  357  KPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSN  416

Query  418  VMGMTKRICELLVQAYN-SKSDTEFSIVRFGNVLGSNGSVVPLFMKQIEKGGPVTVTHEE  476
            VMG TKRI E+++Q+ N  +S T F  VRFGNVLGS GSV+PLF +QIE GGPVTVTH E
Sbjct  417  VMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPE  476

Query  477  VRRYFMTINEavqlvlqaaaFAKGGEVFVLDMGEPVKIIDLARDLIRIYGYEPDVDIKIE  536
            + RYFMTI EA +LVLQA+A+A+GGEVFVLDMG PVKI+DLA++LIR+ G   + DI IE
Sbjct  477  MTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIGIE  535

Query  537  IIGLRPGEKLYEELLIDKENCIATKNDKIWVEKT--YNSANVEYILETL  583
            + G+RPGEKLYEELL  +E       +KI   K   Y  ++V+ I+E L
Sbjct  536  FSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDL  584

380) YSA_02152 in NC_017986


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  299 bits (1122),  Expect = 2e-82, Method: Compositional matrix adjust.
 Identities = 204/487 (42%), Positives = 335/487 (69%), Gaps = 46/487 (9%)

Query  124  FNYWWLSMVIIGGLRL---IMRQYFLGDWFTGAHQIPFANRDDGLVKVAIYGAGTAGNQL  180
            F  W + +++IGG RL   + R+YF+++           ++   LV     GAG +G+ L
Sbjct  109  FITWMMHLLLIGGSRLFWRVYRRYFIDNA---------VEKKATLVV----GAGQGGSVL  155

Query  181  LAALRMGRAMR--PVAFIDDDSDLANRVISG---LQVYKPKHLPQMIKETGAQEILLALP  235
            +  +  ++ MR  PV  +DDD +  +  I+    +Q Y   ++P+++K    + I++A+P
Sbjct  156  IREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGY-VEDIPELVKKFRIKKIIIAIP  214

Query  236  SVSRARRKEILALLEPYPLHVRSVPSFADLASGRVKVDDIQDVDIADLLGRDPVPAKEGL  295
            ++S+ R +EI  + +   +++  +P++ D+ SG + V++++ V++ DLLGRDPV    +L
Sbjct  215  TLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMAL  274

Query  296  LERCIHKQTVLVTGAGGSIGSELCRQIIGLGPTTLLLFDHSEYNLYAILSELEQRVARES  355
            + R + ++T+LVTGAGGSIGSE+CRQ+  ++P  ++L++H+E ++Y+I  EL +  +   
Sbjct  275  ISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGN--  332

Query  356  LSVRLLPILGSVRNQQHLADVMSTWRVATVYHAAAYKHVPMVEHNMAEGILNNVFGTLCT  415
              + ++P+++ V+N+ ++ +VM+  +  +VYHAAA KHVP++E N  E+I NN++GT   
Sbjct  333  -RIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNV  391

Query  416  AQAALQSGVANFVLISTDKAVRPTNVMGGTKRLSELILQALSREAAPVMYGDSSKIARVN  475
            A++A ++ V++FV+ISTDKAV P+NVMG+TKR++E+++Q+L+ + +              
Sbjct  392  AESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNS--------------  437

Query  476  NTRFTMVRFGNVLGSSGSVIPLFHKQIKAGGPITVTHPKITRYFMTIPEAAQLVVQAGAM  535
            +T F  VRFGNVLGS GSVIPLF +QI +GGP+TVTHP +TRYFMTIPEA++LV+QAGA+
Sbjct  438  KTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGAL  497

Query  536  GQGGDVFVLDMGEPVKIVELAEKMIHLSGLSVRSSGNPSGDIAIEFTGLRPGEKLFEELL  595
            +QGG+VFVLDMG PVKIV+LA ++I+L       SG+   DI+IEF+G+RPGEKL+EELL
Sbjct  498  AQGGEVFVLDMGKPVKIVDLAKNLIRL-------SGKKEEDIGIEFSGIRPGEKLYEELL  550

Query  596  IGDDVSP  602
              +++ P
Sbjct  551  NKNEIHP  557

381) PPS_1447 in NC_015733


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  299 bits (1121),  Expect = 3e-82, Method: Compositional matrix adjust.
 Identities = 204/487 (42%), Positives = 334/487 (69%), Gaps = 46/487 (9%)

Query  116  FNYWWLSMVIIGGLRL---IMRQYFLGDWFTGAHQIPFANRDDGLVKVAIYGAGTAGNQL  172
            F  W + +++IGG RL   + R+YF+++           ++   LV     GAG +G+ L
Sbjct  109  FITWMMHLLLIGGSRLFWRVYRRYFIDNA---------VEKKATLVV----GAGQGGSVL  155

Query  173  LAALRMGRAMR--PVAFIDDDSDLANRVISG---LQVYKPKHLPQMIKETGAQEILLALP  227
            +  +  ++ MR  PV  +DDD +  +  I+    +Q Y   ++P+++K    + I++A+P
Sbjct  156  IREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGY-VEDIPELVKKFRIKKIIIAIP  214

Query  228  SVSRARRKEILALLEPYPLHVRSVPAFADLASGRVKVDDIQDVDIADLLGRDPVPAKEGL  287
            ++S+ R +EI  + +   +++  +P + D+ SG + V++++ V++ DLLGRDPV    +L
Sbjct  215  TLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMAL  274

Query  288  LERCIHKQTVLVTGAGGSIGSELCRQIIGLGPTTLLLFDHSEYNLYAILSELEQRVARES  347
            + R + ++T+LVTGAGGSIGSE+CRQ+  ++P  ++L++H+E ++Y+I  EL +  +   
Sbjct  275  ISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGN--  332

Query  348  LSVRLLPILGSVRNQQHLADVMSTWRVATVYHAAAYKHVPMVEHNMAEGILNNVFGTLCT  407
              + ++P+++ V+N+ ++ +VM+  +  +VYHAAA KHVP++E N  E+I NN++GT   
Sbjct  333  -RIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNV  391

Query  408  AQAALQSGVANFVLISTDKAVRPTNVMGGTKRLSELILQALSREAAPVMYGDSSKIARVN  467
            A++A ++ V++FV+ISTDKAV P+NVMG+TKR++E+++Q+L+ + +              
Sbjct  392  AESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNS--------------  437

Query  468  NTRFTMVRFGNVLGSSGSVIPLFHKQIKAGGPITVTHPKITRYFMTIPEAAQLVVQAGAM  527
            +T F  VRFGNVLGS GSVIPLF +QI +GGP+TVTHP +TRYFMTIPEA++LV+QAGA+
Sbjct  438  KTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGAL  497

Query  528  GQGGDVFVLDMGEPVKIVELAEKMIHLSGLSVRSSGNPSGDIAIEFTGLRPGEKLFEELL  587
            +QGG+VFVLDMG PVKIV+LA ++I+L       SG+   DI+IEF+G+RPGEKL+EELL
Sbjct  498  AQGGEVFVLDMGKPVKIVDLAKNLIRL-------SGKKEEDIGIEFSGIRPGEKLYEELL  550

Query  588  IGDDVSP  594
              +++ P
Sbjct  551  NKNEIHP  557

382) DICTH_0426 in NC_011297


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  298 bits (1117),  Expect = 5e-82, Method: Compositional matrix adjust.
 Identities = 213/497 (43%), Positives = 348/497 (71%), Gaps = 21/497 (4%)

Query  62   LYTFLFKLHRTLWEYFSLEALKELTLAVTLEKVIFFLSHLLLPISGLPRSIVVISYFTSL  121
            +++++F+L +  WEY S+  L  +  AVT   V+   + LL+++     +++ + ++T +
Sbjct  57   IFAYVFNLYHRAWEYASVSELMSVLKAVTSSIVV---TLLLVSLLISESPFLRLYFITWM  113

Query  122  LFLFSV-------RAFSRWYHESSKIKSKNIYASPKRVVIVGAGDAGEKILREIKTNREI  174
            + L+ +       R + R + +++           K  ++VGAG++G  ++RE+  ++++
Sbjct  114  MHLLLIGGSRLFWRVYRRYFIDNA--------VEKKATLVVGAGQGGSVLIREMLRSQDM  165

Query  175  NYEVAGFLDDDPKKIGKTIHG-VKILGPISSLPKVVVEKRVQEILVAIPSAPPSLLRNIV  233
              +    +DDD +K   TI   VK+ G +  +P +V   R++ I++AIP+ +   L +I 
Sbjct  166  RMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEIN  225

Query  234  SMTSKLRIPVKTLPGIWELIDGKVTISKIRNVKIEDLLERDVINLDSERIGEYLRGKKVL  293
             + +   + +  +P I +++ G + ++++++V +EDLL RD ++LD   I+  L  K +L
Sbjct  226  KICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTIL  285

Query  294  VTGAGGSIGSEICRQVASYKPRKLILLGRGENSIFNIELELKSIYP-KLDIKSYIADIRD  352
            VTGAGGSIGSEICRQV+ + P+K+ILLG+GENSI++I+ EL   Y  ++++ + IAD+++
Sbjct  286  VTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQN  345

Query  353  RDRIFYIFSVEKPDIVFHTAAHKHVPLMEENPDEAVFNNVFGTINLMDASKEYGVSKFIF  412
            + RI+ + +  KP  V+H+AAHKHVPLME NP+EA+ NN++GT N+ +++KE  VSKF+ 
Sbjct  346  KTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVM  405

Query  413  ISTDKAVYPSNIMGATKRVGEILIKYYN-SHSKTEYIAVRFGNVLGSRGSVLEVFRKQLE  471
            ISTDKAV PSN+MGATKR++E++I+  N  +SKT ++AVRFGNVLGSRGSV+ +F++Q+E
Sbjct  406  ISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIE  465

Query  472  KGGPITVTHEDMERYFMTIPEAVGLVLQAGAIGRSGDLFVLDMGKPIKIIDLARNFIELS  531
             GGP+TVTH +M RYFMTIPEA  LVLQAGA++++G++FVLDMGKP+KI+DLA+N+I LS
Sbjct  466  SGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLS  525

Query  532  GYSLDDIEIKITGLRPG  548
            G   +DI I ++G+RPG
Sbjct  526  GKKEEDIGIEFSGIRPG  542

383) pRL90052 in NC_008379


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  298 bits (1117),  Expect = 5e-82, Method: Compositional matrix adjust.
 Identities = 201/476 (43%), Positives = 326/476 (69%), Gaps = 29/476 (6%)

Query  124  LIAIGLSRLSIRYWLGDAYQRILHKNMLAK--VLIYGAGTAGRQLAGALINSAELNVVGY  181
            L+ IG SRL   +W    Y+R +  N + K   L+ GAG +G  L   ++ S ++ +   
Sbjct  116  LLLIGGSRL---FW--RVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPV  170

Query  182  L---DDDPRLKGGVMGGLPI--YDPSDLPVLAESLGVHNVLLALPSASRQRRNEILEHIR  236
            L   DD  + K  +   + +  Y   D+P L   + + ++++A+P+ S++R NEI     
Sbjct  171  LAVDDDKNKQKMTITERVKVQGY-VEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICN  229

Query  237  KARVNVRTLPDLTALAQGRIAVSDIRELEIEDLLGREAVAPRQELLDKSMRNKVVMVTGA  296
               V++  +P++  +  G + V++++ +E+EDLLGR++V     L+ + + NK ++VTGA
Sbjct  230  IEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGA  289

Query  297  GGSIGGELCRQILRTGPSSLILIDQNEFALYNIHAELQKLAELYKHENMQIVPILCSVRD  356
            GGSIG+E+CRQ+ + +P  +IL+++ E ++Y+IH EL K    Y +  +++VP++  V++
Sbjct  290  GGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKT---YGN-RIEFVPVIADVQN  345

Query  357  QDRMEHVMQSWRPQTLYHAAAYKHVPLVEHNAVEGIKNNVMGTLVAARAANKCGVSNFVL  416
            + R+ +VM+  +P ++YHAAA KHVPL+E N+ E+I+NN++GT   A +A+   VS+FV+
Sbjct  346  KTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVM  405

Query  417  ISTDKAVRPTNVMGASKRLAEMVLQALAAESATDRMRTNFSMVRFGNVLGSSGSVVPLFR  476
            ISTDKAV P+NVMGA+KR+AEMV+Q+L  +++    +T+F  VRFGNVLGS GSV+PLF+
Sbjct  406  ISTDKAVNPSNVMGATKRIAEMVIQSLNEDNS----KTSFVAVRFGNVLGSRGSVIPLFK  461

Query  477  QQIKEGGPVTLTHPDITRYFMTISEASQLVIQAGAMAEGGDVFLLDMGEPVRIADLARKM  536
            +QI  GGPVT+THP++TRYFMTI+EAS+LV+QAGA+A+GG+VF+LDMG PV+I DLA+++
Sbjct  462  NQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNL  521

Query  537  VELSGLAVRDEDNPEGDIELSVTGLRPGEKLFEELLIGDNPETTE-HPRIMKARED  591
            + LSG       + E DI +  +G+RPGEKL+EELL  ++ +  +   +I +++ D
Sbjct  522  IRLSG-------KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVD  570

384) Marpi_1345 in NC_016751


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  298 bits (1116),  Expect = 6e-82, Method: Compositional matrix adjust.
 Identities = 223/515 (44%), Positives = 352/515 (69%), Gaps = 15/515 (2%)

Query  53   YVNKIYDQIWRFATLKEIKPIVYSAFTGYLLNFLVVEAI--RRLFFKSFSLPLTVGFITA  110
            YV ++Y++ W +A++ E+ +++ +  ++ ++ +L+V  +     F++ +       FIT 
Sbjct  60   YVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLY-------FITW  112

Query  111  LLGSILVIGSRTWWFSKNKHIENHYPDNRKNILIIGAGEAGVELLDEFLRNPENGVVKGF  170
            ++  +L+ GSR  W    + + ++ + ++K  L++GAG++G  L+ E LR+ +  +   +
Sbjct  113  MMHLLLIGGSRLFWRVYRRYFIDN-AVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVL  171

Query  171  LDDDEIKIGRLIRG--IPVLGKTNEVMDYVEKLKINEVIIAIPSATSEELKRIISNIDTK  228
              DD+ +  ++     + V G  +++ + V K++I+ +IIAIP+ +   L+ I    +  
Sbjct  172  AVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIE  231

Query  229  RVRLKTLPGLFEILNNKVSLGFLRDVNIEDLLGRKEIKVNFDEIGFYITNKTVLVTGAGG  288
             V L  +P + ++L+  + +  L+ V++EDLLGR  + ++   I+  +TNKT+LVTGAGG
Sbjct  232  GVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGG  291

Query  289  SIGSEICRQVAALNPEKLLILGRGENSIFKINRELKEKFPN-LKVVEIISDVTNEDRMEE  347
            SIGSEICRQV+ ++P+K+++LG+GENSI+ I++EL   + N +  V +I+DV N  R+ E
Sbjct  292  SIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILE  351

Query  348  VFKRFSPDVVFHAAAHKHVPLMEKNPSEAFRVNSYGTYILARLSDKYDVSHFVFISTDKA  407
            V + F P  V+HAAAHKHVPLME NP EA+R N  GT  +A  +   +VS FV ISTDKA
Sbjct  352  VMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKA  411

Query  408  INPTSIMGSSKRLGEiiirs-isrrsKTHFGIVRFGNVLGSRGSVVPIFKEQIKNGGPVT  466
            +NP+++MG++KR++E++I+S     SKT F  VRFGNVLGSRGSV+P+FK+QI +GGPVT
Sbjct  412  VNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVT  471

Query  467  VTHPDMKRYFMTIPEAVALVLQAGAFANKGEVFVFDMGKPISIDYLAREMIRLSGYIPDQ  526
            VTHP+M RYFMTIPEA  LVLQAGA+A+ GEVFV+DMGKP+ I  LA+++IRLSG   ++
Sbjct  472  VTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEE  530

Query  527  DIKIVYTGIRNGEKLYEELFLDSEEFLKTPNDRIY  561
            DI I ++GIR GEKLYEEL+  +E   +   ++IY
Sbjct  531  DIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIY  565

385) VPBB_0247 in NC_019955


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  297 bits (1112),  Expect = 1e-81, Method: Compositional matrix adjust.
 Identities = 216/488 (45%), Positives = 332/488 (69%), Gaps = 33/488 (6%)

Query  106  LFCGGPRVIVRSLIAQSY----STQSKEVLIYGAGSGGRQLAMALRSSGDYRVRAFID-G  160
            L+ GG+R++ R  + + Y    + + K  L+ GAG GG  L   +  S D R+++ +  +
Sbjct  117  LLIGGSRLFWR--VYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVD  174

Query  161  DSTLCNTMILGLPVIA---IEDAMPIINKYDVSQVLLAVPSAKRSRRKVILDELAKL---  214
            D    + M +   V     +ED   +++K+ + ++++A+P+  + R    L+E+ K+   
Sbjct  175  DDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKR----LNEINKICNI  230

Query  215  -PVEVLTVPDMTDIVSGKAKIDELKDVAIEDLLGRDPVAPQQVLLEANIKDKVVMVTGAG  273
              VE++ +P++ D++SG   +++LK V +EDLLGRDPV  +  L+  ++ +K ++VTGAG
Sbjct  231  EGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAG  290

Query  274  GSIGSELCRQIVEQSPKSIILFELSEFGLYQIDRELNQLKVEKGLTCDIVPLLGSVQRQH  333
            GSIGSE+CRQ+    P+ IIL+  +E ++Y I++EL++   ++    ++VP+++ VQ + 
Sbjct  291  GSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNR---IEFVPVIADVQNKT  347

Query  334  RLETTMSSFKVQTVYHAAAYKHVPLVEFNVIEGVRNNIYGTYYTACAAIKAGVESFVLIS  393
            R+   M+ FK  +VYHAAA KHVPL+E+N  E++RNNI GT   A +A  + V  FV+IS
Sbjct  348  RILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMIS  407

Query  394  TDKAVRPTNVMGTTKRMAELGLQALADQENAKPNGTRFCMVRFGNVLGSSGSVIPVFKKQ  453
            TDKAV P+NVMG+TKR+AE+ +Q+L ++++     T F  VRFGNVLGS GSVIP+FK+Q
Sbjct  408  TDKAVNPSNVMGATKRIAEMVIQSLNEDNSK----TSFVAVRFGNVLGSRGSVIPLFKNQ  463

Query  454  IASGGPVTVTHPEITRFFMTIPEAAQLVIQAGAMGKGGDVFVLDMGESVKITDLACNLIQ  513
            I SGGPVTVTHPE+TR+FMTIPEA++LV+QAGA+++GG+VFVLDMG +VKI DLA NLI+
Sbjct  464  IESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIR  523

Query  514  LSGLEVKSEANPHGDIEIQFSGLRPGEKLYEELLIGDNVK-QTAHERIMTAHEVHLPLQE  572
            LSG       + + DI I+FSG+RPGEKLYEELL  +++  Q   E+I  +   H    E
Sbjct  524  LSG-------KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTE  576

Query  573  YELLLNDL  580
             +L+++DL
Sbjct  577  VDLIVEDL  584

386) M634_03175 in NC_021847


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  297 bits (1111),  Expect = 1e-81, Method: Compositional matrix adjust.
 Identities = 217/488 (45%), Positives = 331/488 (68%), Gaps = 33/488 (6%)

Query  122  LFCGGPRVIVRSLVAQSY----STQSKEVLIYGAGSGGRQLAMALRSSGDYRVRAFID-G  176
            L+ GG+R++ R  V + Y    + + K  L+ GAG GG  L   +  S D R+++ +  +
Sbjct  117  LLIGGSRLFWR--VYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVD  174

Query  177  DSTLCNTMILGLPVIA---IEDAMPIINKYDVSQVLLAVPSAKRSRRKVILDELAKL---  230
            D    + M +   V     +ED   +++K+ + ++++A+P+  + R    L+E+ K+   
Sbjct  175  DDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKR----LNEINKICNI  230

Query  231  -PVEVLTVPDMTDIVSGKAKIDELKDVAIEDLLGRDPVAPQQVLLEANIKDKVVMVTGAG  289
              VE++ +P++ D++SG   +++LK V +EDLLGRDPV  +  L+  ++ +K ++VTGAG
Sbjct  231  EGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAG  290

Query  290  GSIGSELCRQIVEQSPKSIILFELSEFGLYQIDRELNQLKIEKGLTCDIIPLLGSVQRQH  349
            GSIGSE+CRQ+    P+ IIL+  +E ++Y I++EL++     G   +++P+++ VQ + 
Sbjct  291  GSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSK---TYGNRIEFVPVIADVQNKT  347

Query  350  RLETTMSSFKVQTVYHAAAYKHVPLVEFNVIEGVRNNIYGTYYTACAAIKAGVESFVLIS  409
            R+   M+ FK  +VYHAAA KHVPL+E+N  E++RNNI GT   A +A  + V  FV+IS
Sbjct  348  RILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMIS  407

Query  410  TDKAVRPTNVMGTTKRMAELGLQALADQENAKPNGTRFCMVRFGNVLGSSGSVIPVFKKQ  469
            TDKAV P+NVMG+TKR+AE+ +Q+L ++++     T F  VRFGNVLGS GSVIP+FK+Q
Sbjct  408  TDKAVNPSNVMGATKRIAEMVIQSLNEDNSK----TSFVAVRFGNVLGSRGSVIPLFKNQ  463

Query  470  IASGGPVTVTHPEITRFFMTIPEAAQLVIQAGAMGKGGDVFVLDMGESVKITDLACNLIQ  529
            I SGGPVTVTHPE+TR+FMTIPEA++LV+QAGA+++GG+VFVLDMG +VKI DLA NLI+
Sbjct  464  IESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIR  523

Query  530  LSGLEVKSEANPHGDIEIQFSGLRPGEKLYEELLIGDNVK-QTAHERIMTAHEVHLPLKE  588
            LSG       + + DI I+FSG+RPGEKLYEELL  +++  Q   E+I  +   H    E
Sbjct  524  LSG-------KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTE  576

Query  589  YELLLNDL  596
             +L+++DL
Sbjct  577  VDLIVEDL  584

387) Runsl_4096 in NC_015703


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  297 bits (1113),  Expect = 1e-81, Method: Compositional matrix adjust.
 Identities = 203/462 (44%), Positives = 322/462 (70%), Gaps = 25/462 (5%)

Query  125  YFISL---FLMIASRLLVKNIYKTLIINAPGEKVNVLIYGAGELGILIKNTLLRNRHKKY  181
            YFI+    +L+I++  L   +Y+  +I+ + EK   L+ GAG+ G ++   +LR+++ + 
Sbjct  108  YFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRM  167

Query  182  N-ILGFIDDNPSLSFKTLEGVVV--YPEADAD-IRFIEGSNPEDIEVILA---INDIKPY  234
            + +L+  DD+        E V V  Y E  ++ ++ +   +       L+   +N+I+  
Sbjct  168  QPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKI  227

Query  235  RKNQIIERFLKRDIIVKVAPSIYDRLGNEELKSEEIRNIRIEDLLERDPIQLDNQSISRQ  294
             + + +E F   +I         + + + EL  ++++++ +EDLL RDP++LD   ISR+
Sbjct  228  CNIEGVELFKMPNI---------EDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRE  278

Query  295  LAGRVALVTGAAGSIGSEIIRQLIRFQPQTLILLDQSESGLYDLENELKQQFQHYLGDGT  354
            L+ +  LVTGA+GSIGSEI RQ+ +F+PQ +ILL+++E+++Y +++EL + +    G+  
Sbjct  279  LTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTY----GNRI  334

Query  355  MVIVKVADVTDEVRMRHIFSHWLPHFVFHAAAYKHVPLMEDHPYEAIKVNVFGTKILADL  414
              +  +ADV +  R+ ++ ++  P  V+HAAA KHVPLME +P EAI+ N++GTK +A+ 
Sbjct  335  EFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAES  394

Query  415  AVEMGVNKFVMISTDKAVNPTNVMGATKRLAELYVQSLNQRFPNDTRFITTRFGNVLGSN  474
            A E  V+KFVMISTDKAVNP+NVMGATKR+AE+ +QSLN+   + T F++ RFGNVLGS 
Sbjct  395  AKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNED-NSKTSFVAVRFGNVLGSR  453

Query  475  GSVVPLFQKQIQAGGPITVTHPDVIRYFMTIPEACQLVLEAGSMGKGGEIFVFDMGEPVK  534
            GSV+PLF++QI++GGP+TVTHP++ RYFMTIPEA +LVL+AG++++GGE+FV+DMG PVK
Sbjct  454  GSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVK  513

Query  535  ITDLAQKMIKLSGLRLEKDIQIIYTGLRPGEKLYEELLSDKE  576
            I DLA+++I+LSG + E DI I ++G+RPGEKLYEELL+ +E
Sbjct  514  IVDLAKNLIRLSG-KKEEDIGIEFSGIRPGEKLYEELLNKNE  554

388) lpa_01458 in NC_014125


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  297 bits (1112),  Expect = 1e-81, Method: Compositional matrix adjust.
 Identities = 221/518 (43%), Positives = 349/518 (68%), Gaps = 19/518 (3%)

Query  71   YYFKIYRGLWRFSSLNDVIRILKATITAMVLVIPVFYLTSILQHLPRSVFPLYCI--ILA  128
            Y F++Y+  W ++S+++++ +LKA  +++V+ +        L     + + LY I  ++ 
Sbjct  60   YVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLL----LVSLLISESPFLRLYFITWMMH  115

Query  129  TILCGGRLVIRLHWDKPGR--GNRELETKRVLVVGAGQAGEGLVRDLKRSSYYR--PIGF  184
             +L GG    RL W    R   +  +E K  LVVGAGQ+G  L+R++ RS   R  P+  
Sbjct  116  LLLIGGS---RLFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLA  172

Query  185  VDDNKSKRGLEVHG-VRVLGTTNQITELVNQYDVDLIFIAIPSAKSATMRRIVTLCEQSH  243
            VDD+K+K+ + +   V+V G  ++I ELV+++ +  I+IAIP+     +  I  +C+   
Sbjct  173  VDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEG  232

Query  244  VPFSTLPSISALAAGRVEVNALRPVNIEDLLGRDQVTLEWEKIARSiagrrilitggggs  303
            V +  +P+I  + +G +EVN L+ V++EDLLGRD V L+   I+R ++ + IL+TG+GGS
Sbjct  233  VELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGS  292

Query  304  igsELCRQVMALEPASIAIVENSEFNLYRIEQELLKSFPGIPVELS--LISVTDEIAINH  361
            IGSE+CRQV  ++P  I ++ ++E ++Y I+QEL K++ G  +E+   +  V +   I +
Sbjct  293  IGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTY-GNRIEFVPVIADVQNKTRILE  351

Query  362  LFRRFQPEIVFHAAAYKHVPMLQHQVRVAVFNNVIGTQVVAKASVTFGAEKFILISTDKA  421
            +   F+P  V+HAAA KHVP+++ + + A+ NN++GT+ VA ++      KF++ISTDKA
Sbjct  352  VMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKA  411

Query  422  VNPTNIMGTTKRVAEIYCQNLN-TRVKTQFITVRFGNVLGSAGSVVPLFQKQLQEGGPLT  480
            VNP+N+MG+TKR+AE+  Q+LN    KT F++VRFGNVLGS GSV+PLF++Q++ GGP+T
Sbjct  412  VNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVT  471

Query  481  VTHPDMQRYFMTIPEACQLILQAMVNGEGGEIFVLDMGEPVKISYLAEQMIRLAGKEPGR  540
            VTHP+M RYFMTIPEA +L+LQA   ++GGE+FVLDMG PVKI  LA ++IRL+GK    
Sbjct  472  VTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEE-  530

Query  541  DIMIEYTGLRPGEKMYEELFHETEQLTSTKHEKLFKAR  578
            DI IE++G+RPGEK+YEEL++  E       EK+++++
Sbjct  531  DIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGK  568

389) lp12_0988 in NC_016811


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  297 bits (1112),  Expect = 1e-81, Method: Compositional matrix adjust.
 Identities = 221/518 (43%), Positives = 349/518 (68%), Gaps = 19/518 (3%)

Query  71   YYFKIYRGLWRFSSLNDVIRILKATITAMVLVIPVFYLTSILQHLPRSVFPLYCI--ILA  128
            Y F++Y+  W ++S+++++ +LKA  +++V+ +        L     + + LY I  ++ 
Sbjct  60   YVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLL----LVSLLISESPFLRLYFITWMMH  115

Query  129  TILCGGRLVIRLHWDKPGR--GNRELETKRVLVVGAGQAGEGLVRDLKRSSYYR--PIGF  184
             +L GG    RL W    R   +  +E K  LVVGAGQ+G  L+R++ RS   R  P+  
Sbjct  116  LLLIGGS---RLFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLA  172

Query  185  VDDNKSKRGLEVHG-VRVLGTTNQITELVNQYDVDLIFIAIPSAKSATMRRIVTLCEQSH  243
            VDD+K+K+ + +   V+V G  ++I ELV+++ +  I+IAIP+     +  I  +C+   
Sbjct  173  VDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEG  232

Query  244  VPFSTLPSISALAAGRVEVNALRPVNIEDLLGRDQVTLEWEKIARSiagrrilitggggs  303
            V +  +P+I  + +G +EVN L+ V++EDLLGRD V L+   I+R ++ + IL+TG+GGS
Sbjct  233  VELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGS  292

Query  304  igsELCRQVMALEPASIAIVENSEFNLYRIEQELLKSFPGIPVELS--LISVTDEIAINH  361
            IGSE+CRQV  ++P  I ++ ++E ++Y I+QEL K++ G  +E+   +  V +   I +
Sbjct  293  IGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTY-GNRIEFVPVIADVQNKTRILE  351

Query  362  LFRRFQPEIVFHAAAYKHVPMLQHQVRVAVFNNVIGTQVVAKASVTFGAEKFILISTDKA  421
            +   F+P  V+HAAA KHVP+++ + + A+ NN++GT+ VA ++      KF++ISTDKA
Sbjct  352  VMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKA  411

Query  422  VNPTNIMGTTKRVAEIYCQNLN-TRVKTQFITVRFGNVLGSAGSVVPLFQKQLQEGGPLT  480
            VNP+N+MG+TKR+AE+  Q+LN    KT F++VRFGNVLGS GSV+PLF++Q++ GGP+T
Sbjct  412  VNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVT  471

Query  481  VTHPDMQRYFMTIPEACQLILQAMVNGEGGEIFVLDMGEPVKISYLAEQMIRLAGKEPGR  540
            VTHP+M RYFMTIPEA +L+LQA   ++GGE+FVLDMG PVKI  LA ++IRL+GK    
Sbjct  472  VTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEE-  530

Query  541  DIMIEYTGLRPGEKMYEELFHETEQLTSTKHEKLFKAR  578
            DI IE++G+RPGEK+YEEL++  E       EK+++++
Sbjct  531  DIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGK  568

390) capD in NC_009494


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  297 bits (1112),  Expect = 1e-81, Method: Compositional matrix adjust.
 Identities = 221/518 (43%), Positives = 349/518 (68%), Gaps = 19/518 (3%)

Query  71   YYFKIYRGLWRFSSLNDVIRILKATITAMVLVIPVFYLTSILQHLPRSVFPLYCI--ILA  128
            Y F++Y+  W ++S+++++ +LKA  +++V+ +        L     + + LY I  ++ 
Sbjct  60   YVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLL----LVSLLISESPFLRLYFITWMMH  115

Query  129  TILCGGRLVIRLHWDKPGR--GNRELETKRVLVVGAGQAGEGLVRDLKRSSYYR--PIGF  184
             +L GG    RL W    R   +  +E K  LVVGAGQ+G  L+R++ RS   R  P+  
Sbjct  116  LLLIGGS---RLFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLA  172

Query  185  VDDNKSKRGLEVHG-VRVLGTTNQITELVNQYDVDLIFIAIPSAKSATMRRIVTLCEQSH  243
            VDD+K+K+ + +   V+V G  ++I ELV+++ +  I+IAIP+     +  I  +C+   
Sbjct  173  VDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEG  232

Query  244  VPFSTLPSISALAAGRVEVNALRPVNIEDLLGRDQVTLEWEKIARSiagrrilitggggs  303
            V +  +P+I  + +G +EVN L+ V++EDLLGRD V L+   I+R ++ + IL+TG+GGS
Sbjct  233  VELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGS  292

Query  304  igsELCRQVMALEPASIAIVENSEFNLYRIEQELLKSFPGIPVELS--LISVTDEIAINH  361
            IGSE+CRQV  ++P  I ++ ++E ++Y I+QEL K++ G  +E+   +  V +   I +
Sbjct  293  IGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTY-GNRIEFVPVIADVQNKTRILE  351

Query  362  LFRRFQPEIVFHAAAYKHVPMLQHQVRVAVFNNVIGTQVVAKASVTFGAEKFILISTDKA  421
            +   F+P  V+HAAA KHVP+++ + + A+ NN++GT+ VA ++      KF++ISTDKA
Sbjct  352  VMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKA  411

Query  422  VNPTNIMGTTKRVAEIYCQNLN-TRVKTQFITVRFGNVLGSAGSVVPLFQKQLQEGGPLT  480
            VNP+N+MG+TKR+AE+  Q+LN    KT F++VRFGNVLGS GSV+PLF++Q++ GGP+T
Sbjct  412  VNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVT  471

Query  481  VTHPDMQRYFMTIPEACQLILQAMVNGEGGEIFVLDMGEPVKISYLAEQMIRLAGKEPGR  540
            VTHP+M RYFMTIPEA +L+LQA   ++GGE+FVLDMG PVKI  LA ++IRL+GK    
Sbjct  472  VTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEE-  530

Query  541  DIMIEYTGLRPGEKMYEELFHETEQLTSTKHEKLFKAR  578
            DI IE++G+RPGEK+YEEL++  E       EK+++++
Sbjct  531  DIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGK  568

391) LPO_1050 in NC_018139


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  297 bits (1113),  Expect = 1e-81, Method: Compositional matrix adjust.
 Identities = 221/518 (43%), Positives = 349/518 (68%), Gaps = 19/518 (3%)

Query  71   YYFKIYRGLWRFSSLNDVIRILKATITAMVLVIPVFYLTSILQHLPRSVFPLYCI--ILA  128
            Y F++Y+  W ++S+++++ +LKA  +++V+ +        L     + + LY I  ++ 
Sbjct  60   YVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLL----LVSLLISESPFLRLYFITWMMH  115

Query  129  TILCGGRLVIRLHWDKPGR--GNRELETKRVLVVGAGQAGEGLVRDLKRSSYYR--PIGF  184
             +L GG    RL W    R   +  +E K  LVVGAGQ+G  L+R++ RS   R  P+  
Sbjct  116  LLLIGGS---RLFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLA  172

Query  185  VDDNKSKRGLEVHG-VRVLGTTNQITELVNQYDVDLIFIAIPSAKSATMRRIVTLCEQSH  243
            VDD+K+K+ + +   V+V G  ++I ELV+++ +  I+IAIP+     +  I  +C+   
Sbjct  173  VDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEG  232

Query  244  VPFSTLPSISALAAGRVEVNALRPVNIEDLLGRDQVTLEWEKIARSiagrrilitggggs  303
            V +  +P+I  + +G +EVN L+ V++EDLLGRD V L+   I+R ++ + IL+TG+GGS
Sbjct  233  VELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGS  292

Query  304  igsELCRQVMALEPASIAIVENSEFNLYRIEQELLKSFPGIPVELS--LISVTDEIAINH  361
            IGSE+CRQV  ++P  I ++ ++E ++Y I+QEL K++ G  +E+   +  V +   I +
Sbjct  293  IGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTY-GNRIEFVPVIADVQNKTRILE  351

Query  362  LFRRFQPEIVFHAAAYKHVPMLQHQVRVAVFNNVIGTQVVAKASVTFGAEKFILISTDKA  421
            +   F+P  V+HAAA KHVP+++ + + A+ NN++GT+ VA ++      KF++ISTDKA
Sbjct  352  VMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKA  411

Query  422  VNPTNIMGTTKRVAEIYCQNLN-TRVKTQFITVRFGNVLGSAGSVVPLFQKQLQEGGPLT  480
            VNP+N+MG+TKR+AE+  Q+LN    KT F++VRFGNVLGS GSV+PLF++Q++ GGP+T
Sbjct  412  VNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVT  471

Query  481  VTHPDMQRYFMTIPEACQLILQAMVNGEGGEIFVLDMGEPVKISYLAEQMIRLAGKEPGR  540
            VTHP+M RYFMTIPEA +L+LQA   ++GGE+FVLDMG PVKI  LA ++IRL+GK    
Sbjct  472  VTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEE-  530

Query  541  DIMIEYTGLRPGEKMYEELFHETEQLTSTKHEKLFKAR  578
            DI IE++G+RPGEK+YEEL++  E       EK+++++
Sbjct  531  DIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGK  568

392) lpg0966 in NC_002942


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  297 bits (1112),  Expect = 1e-81, Method: Compositional matrix adjust.
 Identities = 221/518 (43%), Positives = 349/518 (68%), Gaps = 19/518 (3%)

Query  71   YYFKIYRGLWRFSSLNDVIRILKATITAMVLVIPVFYLTSILQHLPRSVFPLYCI--ILA  128
            Y F++Y+  W ++S+++++ +LKA  +++V+ +        L     + + LY I  ++ 
Sbjct  60   YVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLL----LVSLLISESPFLRLYFITWMMH  115

Query  129  TILCGGRLVIRLHWDKPGR--GNRELETKRVLVVGAGQAGEGLVRDLKRSSYYR--PIGF  184
             +L GG    RL W    R   +  +E K  LVVGAGQ+G  L+R++ RS   R  P+  
Sbjct  116  LLLIGGS---RLFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLA  172

Query  185  VDDNKSKRGLEVHG-VRVLGTTNQITELVNQYDVDLIFIAIPSAKSATMRRIVTLCEQSH  243
            VDD+K+K+ + +   V+V G  ++I ELV+++ +  I+IAIP+     +  I  +C+   
Sbjct  173  VDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEG  232

Query  244  VPFSTLPSISALAAGRVEVNALRPVNIEDLLGRDQVTLEWEKIARSiagrrilitggggs  303
            V +  +P+I  + +G +EVN L+ V++EDLLGRD V L+   I+R ++ + IL+TG+GGS
Sbjct  233  VELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGS  292

Query  304  igsELCRQVMALEPASIAIVENSEFNLYRIEQELLKSFPGIPVELS--LISVTDEIAINH  361
            IGSE+CRQV  ++P  I ++ ++E ++Y I+QEL K++ G  +E+   +  V +   I +
Sbjct  293  IGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTY-GNRIEFVPVIADVQNKTRILE  351

Query  362  LFRRFQPEIVFHAAAYKHVPMLQHQVRVAVFNNVIGTQVVAKASVTFGAEKFILISTDKA  421
            +   F+P  V+HAAA KHVP+++ + + A+ NN++GT+ VA ++      KF++ISTDKA
Sbjct  352  VMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKA  411

Query  422  VNPTNIMGTTKRVAEIYCQNLN-TRVKTQFITVRFGNVLGSAGSVVPLFQKQLQEGGPLT  480
            VNP+N+MG+TKR+AE+  Q+LN    KT F++VRFGNVLGS GSV+PLF++Q++ GGP+T
Sbjct  412  VNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVT  471

Query  481  VTHPDMQRYFMTIPEACQLILQAMVNGEGGEIFVLDMGEPVKISYLAEQMIRLAGKEPGR  540
            VTHP+M RYFMTIPEA +L+LQA   ++GGE+FVLDMG PVKI  LA ++IRL+GK    
Sbjct  472  VTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEE-  530

Query  541  DIMIEYTGLRPGEKMYEELFHETEQLTSTKHEKLFKAR  578
            DI IE++G+RPGEK+YEEL++  E       EK+++++
Sbjct  531  DIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGK  568

393) capD in NC_021350


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  297 bits (1112),  Expect = 1e-81, Method: Compositional matrix adjust.
 Identities = 221/518 (43%), Positives = 349/518 (68%), Gaps = 19/518 (3%)

Query  71   YYFKIYRGLWRFSSLNDVIRILKATITAMVLVIPVFYLTSILQHLPRSVFPLYCI--ILA  128
            Y F++Y+  W ++S+++++ +LKA  +++V+ +        L     + + LY I  ++ 
Sbjct  60   YVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLL----LVSLLISESPFLRLYFITWMMH  115

Query  129  TILCGGRLVIRLHWDKPGR--GNRELETKRVLVVGAGQAGEGLVRDLKRSSYYR--PIGF  184
             +L GG    RL W    R   +  +E K  LVVGAGQ+G  L+R++ RS   R  P+  
Sbjct  116  LLLIGGS---RLFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLA  172

Query  185  VDDNKSKRGLEVHG-VRVLGTTNQITELVNQYDVDLIFIAIPSAKSATMRRIVTLCEQSH  243
            VDD+K+K+ + +   V+V G  ++I ELV+++ +  I+IAIP+     +  I  +C+   
Sbjct  173  VDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEG  232

Query  244  VPFSTLPSISALAAGRVEVNALRPVNIEDLLGRDQVTLEWEKIARSiagrrilitggggs  303
            V +  +P+I  + +G +EVN L+ V++EDLLGRD V L+   I+R ++ + IL+TG+GGS
Sbjct  233  VELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGS  292

Query  304  igsELCRQVMALEPASIAIVENSEFNLYRIEQELLKSFPGIPVELS--LISVTDEIAINH  361
            IGSE+CRQV  ++P  I ++ ++E ++Y I+QEL K++ G  +E+   +  V +   I +
Sbjct  293  IGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTY-GNRIEFVPVIADVQNKTRILE  351

Query  362  LFRRFQPEIVFHAAAYKHVPMLQHQVRVAVFNNVIGTQVVAKASVTFGAEKFILISTDKA  421
            +   F+P  V+HAAA KHVP+++ + + A+ NN++GT+ VA ++      KF++ISTDKA
Sbjct  352  VMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKA  411

Query  422  VNPTNIMGTTKRVAEIYCQNLN-TRVKTQFITVRFGNVLGSAGSVVPLFQKQLQEGGPLT  480
            VNP+N+MG+TKR+AE+  Q+LN    KT F++VRFGNVLGS GSV+PLF++Q++ GGP+T
Sbjct  412  VNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVT  471

Query  481  VTHPDMQRYFMTIPEACQLILQAMVNGEGGEIFVLDMGEPVKISYLAEQMIRLAGKEPGR  540
            VTHP+M RYFMTIPEA +L+LQA   ++GGE+FVLDMG PVKI  LA ++IRL+GK    
Sbjct  472  VTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEE-  530

Query  541  DIMIEYTGLRPGEKMYEELFHETEQLTSTKHEKLFKAR  578
            DI IE++G+RPGEK+YEEL++  E       EK+++++
Sbjct  531  DIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGK  568

394) Psest_1825 in NC_019936


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  297 bits (1113),  Expect = 1e-81, Method: Compositional matrix adjust.
 Identities = 230/538 (43%), Positives = 350/538 (66%), Gaps = 48/538 (8%)

Query  76   FGMYRAVMRYFGNDALMAIAKAVTlsalllslaVYWNSDAPKLIPRSMVFNYWWLSLVLI  135
            F +Y+    Y +   LM++ KAVT S ++  L V      + ++   + F  W + L+LI
Sbjct  62   FNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLR--LYFITWMMHLLLI  119

Query  136  GGLRL---VMRQYFMGDWFSPTTLTKFKGKEAGLPKVAVYGAGAAGNQLVAALRMGRAMR  192
            GG RL   V R+YF+++            K A L    V GAG +G+ L+  +  ++ MR
Sbjct  120  GGSRLFWRVYRRYFIDNAV---------EKKATL----VVGAGQGGSVLIREMLRSQDMR  166

Query  193  --PVAFIDDDPNLHNRVIAG---LRVYSAKHIGQLVEDTGAGEILLAIPSASRGRRREIL  247
              PV  +DDD N ++  I+    ++ Y   +I +LV       I++AIP+ S+ R  EI 
Sbjct  167  MQPVLAVDDDKNKQKMTITERVKVQGY-VEDIPELVKKFRIKKIIIAIPTLSQKRLNEIN  225

Query  248  EMLERFPLHVRSVPGFMDLASGKVQVEDIQEVDIADLLGRDAVPPQQALFEKCIRGKVVM  307
             + +   +++  +P + D+ SG ++V++++ V++ DLLGRD+V  + AL+ + +  K ++
Sbjct  226  KICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTIL  285

Query  308  VTGAGGSIGSELCRQILSNKPQALLLFEHSEFNLYSIHMELERLIERTSLPIRLVPILGS  367
            VTGAGGSIGSE+CRQ+    PQ ++L+ H+E ++YSIH EL +        I +VP+++ 
Sbjct  286  VTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGN---RIEFVPVIAD  342

Query  368  IRNADRLLDVMRTWGVETIYHAAAYKHVPMVEHNVAEGVLNNVIGTLNTAQAAVQAGVSN  427
            ++N  R+L+VM      ++YHAAA KHVP++E N  E++ NN++GT N A++A ++ VS+
Sbjct  343  VQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSK  402

Query  428  FVLISTDKAVRPTNVMGSTKRVAELVLQALSREPAPGLFGTAGSVHHVNKTRFTMVRFGN  487
            FV+ISTDKAV P+NVMG+TKR+AE+V+Q+L+ + +              KT F  VRFGN
Sbjct  403  FVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNS--------------KTSFVAVRFGN  448

Query  488  VLGSSGSVIPRFYAQIRAGGPVTVTHPKITRYFMTIPEAAQLVIQAGSMGQGGDVFVLDM  547
            VLGS GSVIP F  QI +GGPVTVTHP +TRYFMTIPEA++LV+QAG+++QGG+VFVLDM
Sbjct  449  VLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDM  508

Query  548  GQPVKIAELAEKLIHLSGLSVRSEKCPHGDIAIEYTGLRPGEKLYEELLIGDNVSPTE  605
            G+PVKI +LA +LI+LSG   + E     DI+IE++G+RPGEKLYEELL  +++ P +
Sbjct  509  GKPVKIVDLAKNLIRLSG---KKE----EDIGIEFSGIRPGEKLYEELLNKNEIHPQQ  559

395) wbpM in NC_002947


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  297 bits (1114),  Expect = 1e-81, Method: Compositional matrix adjust.
 Identities = 204/487 (42%), Positives = 334/487 (69%), Gaps = 46/487 (9%)

Query  143  FNYWWLSMVIIGGLRL---IMRQYFLGDWFTGAHQIPFANRDDGLVKVAIYGAGTAGNQL  199
            F  W + +++IGG RL   + R+YF+++           ++   LV     GAG +G+ L
Sbjct  109  FITWMMHLLLIGGSRLFWRVYRRYFIDNA---------VEKKATLVV----GAGQGGSVL  155

Query  200  LAALRMGRAMR--PVAFIDDDSDLANRVISG---LQVYKPKHLQQMIKETGAQEILLALP  254
            +  +  ++ MR  PV  +DDD +  +  I+    +Q Y   ++ +++K    + I++A+P
Sbjct  156  IREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGY-VEDIPELVKKFRIKKIIIAIP  214

Query  255  SVSRARRKEILALLEPYPLHVRSVPAFADLASGRVKVDDIQDVDIADLLGRDPVPAKEGL  314
            ++S+ R +EI  + +   +++  +P + D+ SG + V++++ V++ DLLGRDPV    +L
Sbjct  215  TLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMAL  274

Query  315  LERCIHKQTVLVTGAGGSIGSELCRQIIGLGPTTLLLFDHSEYNLYAILSELEQRVARES  374
            + R + ++T+LVTGAGGSIGSE+CRQ+  ++P  ++L++H+E ++Y+I  EL +  +   
Sbjct  275  ISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGN--  332

Query  375  LPVRLLPILGSVRNQQHLAHVMSTWRVATVYHAAAYKHVPMVEHNMAEGILNNVFGTLCT  434
              + ++P+++ V+N+ ++ +VM+  +  +VYHAAA KHVP++E N  E+I NN++GT   
Sbjct  333  -RIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNV  391

Query  435  AQAALQSGVANFVLISTDKAVRPTNVMGGTKRLSELILQALSREAAPVMYGDSSKIARVN  494
            A++A ++ V++FV+ISTDKAV P+NVMG+TKR++E+++Q+L+ + +              
Sbjct  392  AESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNS--------------  437

Query  495  KTRFTMVRFGNVLGSSGSVIPLFHKQIKAGGPITVTHPKITRYFMTIPEAAQLVVQAGAM  554
            KT F  VRFGNVLGS GSVIPLF +QI +GGP+TVTHP +TRYFMTIPEA++LV+QAGA+
Sbjct  438  KTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGAL  497

Query  555  GQGGDVFVLDMGEPVKIVELAEKMIHLSGLSVRSSGNPNGDIAIEFTGLRPGEKLFEELL  614
            +QGG+VFVLDMG PVKIV+LA ++I+L       SG+ + DI+IEF+G+RPGEKL+EELL
Sbjct  498  AQGGEVFVLDMGKPVKIVDLAKNLIRL-------SGKKEEDIGIEFSGIRPGEKLYEELL  550

Query  615  IGDDVSP  621
              +++ P
Sbjct  551  NKNEIHP  557

396) LPV_1104 in NC_018140


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  297 bits (1111),  Expect = 2e-81, Method: Compositional matrix adjust.
 Identities = 221/518 (43%), Positives = 348/518 (68%), Gaps = 19/518 (3%)

Query  71   YYFKIYRGLWRFSSLNDVIRILKATITAMVLVIPVFYLTSILQHLPRSVFPLYCI--ILA  128
            Y F++Y+  W ++S+++++ +LKA  +++V+ +        L     + + LY I  ++ 
Sbjct  60   YVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLL----LVSLLISESPFLRLYFITWMMH  115

Query  129  TILCGGRLVIRLHWDKPGR--GNRELETKRVLVVGAGQAGEGLVRDLKRSSYYR--PIGF  184
             +L GG    RL W    R   +  +E K  LVVGAGQ+G  L+R++ RS   R  P+  
Sbjct  116  LLLIGGS---RLFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLA  172

Query  185  VDDNKSKRGLEVHG-VRVLGTTNQITELVNQYDVDLIFIAIPSAKSATMRRIVTLCEQSH  243
            VDD+K+K+ + +   V+V G  ++I ELV+++ +  I+IAIP+     +  I  +C+   
Sbjct  173  VDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEG  232

Query  244  VPFSTLPSISALAAGRVEVNALRPVNIEDLLGRDQVTLEWEKIARSiagrrilitggggs  303
            V +  +P+I  + +G +EVN L+ V++EDLLGRD V L+   I+R ++ + IL+TG+GGS
Sbjct  233  VELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGS  292

Query  304  igsELCRQVMALEPASIAIVENSEFNLYRIEQELLKNFPGIPVELS--LISVTDEIAINH  361
            IGSE+CRQV  ++P  I ++ ++E ++Y I+QEL K + G  +E+   +  V +   I +
Sbjct  293  IGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTY-GNRIEFVPVIADVQNKTRILE  351

Query  362  LFRRFQPEIVFHAAAYKHVPMLQHQVRVAVFNNVIGTQVVAKASVTFGAEKFILISTDKA  421
            +   F+P  V+HAAA KHVP+++ + + A+ NN++GT+ VA ++      KF++ISTDKA
Sbjct  352  VMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKA  411

Query  422  VNPTNIMGTTKRVAEIYCQNLN-TRVKTQFITVRFGNVLGSAGSVVPLFQKQLQEGGPLT  480
            VNP+N+MG+TKR+AE+  Q+LN    KT F++VRFGNVLGS GSV+PLF++Q++ GGP+T
Sbjct  412  VNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVT  471

Query  481  VTHPDMQRYFMTIPEACQLILQAMVNGEGGEIFVLDMGEPVKISYLAEQMIRLAGKEPGR  540
            VTHP+M RYFMTIPEA +L+LQA   ++GGE+FVLDMG PVKI  LA ++IRL+GK    
Sbjct  472  VTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEE-  530

Query  541  DIMIEYTGLRPGEKMYEELFHETEQLTSTKHEKLFKAR  578
            DI IE++G+RPGEK+YEEL++  E       EK+++++
Sbjct  531  DIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGK  568

397) REMIM1_CH00792 in NC_021905


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  297 bits (1111),  Expect = 2e-81, Method: Compositional matrix adjust.
 Identities = 203/500 (41%), Positives = 338/500 (68%), Gaps = 29/500 (5%)

Query  112  LIAIGLSRLGIRYWLGDTYQRILHQNTLAK--VLIYGAGNAGRQLAGALTNSAELNVVGY  169
            L+ IG SRL   +W    Y+R + +N++ K   L+ GAG++G  L   +  S ++ +   
Sbjct  116  LLLIGGSRL---FW--RVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPV  170

Query  170  L---DDDPRLKGGIMGGLPI--YDPSDLPVLAETLGVHNVLLALPSASRQRRNEILEHIR  224
            L   DD  + K  I   + +  Y   D+P L   + + ++++A+P+ S++R NEI     
Sbjct  171  LAVDDDKNKQKMTITERVKVQGY-VEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICN  229

Query  225  KARVNVRTLPDLTALAQGRVAVSDIRELEIEDLLGREAVAPRQELLDKAMRNKVVMVTGA  284
               V++  +P++  +  G + V++++ +E+EDLLGR++V     L+ + + NK ++VTGA
Sbjct  230  IEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGA  289

Query  285  GGSIGGELCRQILRNAPSSLILIDQNEFALYNIHAELLKLAEVYKHEGLQIVPILCSVRD  344
            GGSIG+E+CRQ+ +  P  +IL+++ E ++Y+IH EL   +  Y +  +++VP++  V++
Sbjct  290  GGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQEL---SKTYGNR-IEFVPVIADVQN  345

Query  345  QDRMEHIMESWRPQTLYHAAAYKHVPLVEHNAVEGIKNNVMGTLITARAANKYGVSNFVL  404
            + R+ ++M+  +P ++YHAAA KHVPL+E N+ E+I+NN++GT   A +A+   VS+FV+
Sbjct  346  KTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVM  405

Query  405  ISTDKAVRPTNVMGASKRLAEMVLQALAAELTADRLRTNFSMVRFGNVLGSSGSVVPLFR  464
            ISTDKAV P+NVMGA+KR+AEMV+Q+L  + +    +T+F  VRFGNVLGS GSV+PLF+
Sbjct  406  ISTDKAVNPSNVMGATKRIAEMVIQSLNEDNS----KTSFVAVRFGNVLGSRGSVIPLFK  461

Query  465  QQIKEGGPVTLTHPKITRYFMTISEASQLVIQAGAMAEGGDVFLLDMGEPVRIADLARKM  524
            +QI  GGPVT+THP +TRYFMTI+EAS+LV+QAGA+A+GG+VF+LDMG PV+I DLA+++
Sbjct  462  NQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNL  521

Query  525  VELSGLTVRDLDNPEGDIELAVTGLRPGEKLYEELLIGDNPETTE-HPRIMKAREDFLFW  583
            + LSG       + E DI +  +G+RPGEKLYEELL  ++ +  +   +I +++ D  + 
Sbjct  522  IRLSG-------KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIK  574

Query  584  AELSKKLNALNASLDRNDMV  603
            +E+   ++ L  ++ ++ ++
Sbjct  575  TEVDLIVEDLINNFSKEKLL  594

398) XNC1_0138 in NC_014228


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  297 bits (1113),  Expect = 9e-82, Method: Compositional matrix adjust.
 Identities = 200/453 (45%), Positives = 328/453 (73%), Gaps = 23/453 (5%)

Query  42   VILLCGTRFFYRTLRNYTMSRGI---PVIIYGAGESGRQLLP-ILREH-REFEPVAFIDD  96
            ++L+ G+R+F R  R Y +  ++   + ++ GAG++G  L+  +LR +    +PV  +DD
Sbjct  116  LLLIGGSRLFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDD  175

Query  97   NSKLKNLSIHG---VTVYSPNSIIDLIEKYNVKKILLSIPSASISERRYI-IEKL-QPTH  151
            + + ++++I     V  Y  + I +L+ K+ +KKI+++IP+  +S++R   I+K+ +   
Sbjct  176  DKNKQKMTITERVKVQGYV-EDIPELVKKFRIKKIIIAIPT--LSQKRLNEINKICNIEG  232

Query  152  CEILTIPNFNELVDGSAQIDTLRRVSVDDLLGREQVSPLPELLSKNILNKNVLVSGAGGS  211
             E++ +PN+++++ G  +++ L++V V+DLLGR+ V     L+S+++ NK +LV+GAGGS
Sbjct  233  VELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGS  292

Query  212  IGSELCRQIIQQKPNSLVLLELTEYALYSIERELQKINRDKKLNVNIIPILGDIKNSEKI  271
            IGSE+CRQ+ +  P+ ++LL   E ++YSI++EL K   ++   ++++P+++D++N  +I
Sbjct  293  IGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNR---IEFVPVIADVQNKTRI  349

Query  272  DKILSKFHINTIYHAAAYKHVPLVELNTIEGIQNNIFGTLAIAQAALNQKVDKFVLISTD  331
              +++ F   ++YHAAA KHVPL+E N  E+I+NNI+GT  +A++A +  V KFV+ISTD
Sbjct  350  LEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTD  409

Query  332  KAVRPTNIMGATKRFAELILQALARQNKHTQFSMVRFGNVLGSSGSVVPLFEKQIANGGP  391
            KAV P+N+MGATKR+AE+++Q+L  +N  T F  VRFGNVLGS GSV+PLF +QI +GGP
Sbjct  410  KAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGP  469

Query  392  ITLTHKDITRYFMTIPEAAQLVIQAGAMGVNGDVFVLDMGESVRIYDLATKMIHLSGLTI  451
            +T+TH ++TRYFMTIPEA++LV+QAGA++  G+VFVLDMG +V+I DLA ++I+LSG   
Sbjct  470  VTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG---  526

Query  452  KNENNLHGDIEIKVTGLRPGEKLYEELLIGNNV  484
            K+E+    DI I  +G+RPGEKLYEELL  N++
Sbjct  527  KKEE----DIGIEFSGIRPGEKLYEELLNKNEI  555

399) lpl0995 in NC_006369


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  297 bits (1114),  Expect = 9e-82, Method: Compositional matrix adjust.
 Identities = 221/518 (43%), Positives = 349/518 (68%), Gaps = 19/518 (3%)

Query  67   YYFKIYRGLWRFSSLNDVIRILKATITAMVLVIPVFYLTSILQHLPRSVFPLYCI--ILA  124
            Y F++Y+  W ++S+++++ +LKA  +++V+ +        L     + + LY I  ++ 
Sbjct  60   YVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLL----LVSLLISESPFLRLYFITWMMH  115

Query  125  TILCGGRLVIRLHWDKPDR--GNRELETKRVLVVGAGQAGEGLVRDLKRSSYYR--PIGF  180
             +L GG    RL W    R   +  +E K  LVVGAGQ+G  L+R++ RS   R  P+  
Sbjct  116  LLLIGGS---RLFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLA  172

Query  181  VDDNKSKRGLEVHG-VRVLGTTNQITELVNQYDVDLIFIAIPSAKSATMRRIVTLCEQSH  239
            VDD+K+K+ + +   V+V G  ++I ELV+++ +  I+IAIP+     +  I  +C+   
Sbjct  173  VDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEG  232

Query  240  VPFSTLPSISALAAGRVEVNALRPVNIEDLLGRDQVTLEWEKIARSiagrrilitggggs  299
            V +  +P+I  + +G +EVN L+ V++EDLLGRD V L+   I+R ++ + IL+TG+GGS
Sbjct  233  VELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGS  292

Query  300  igsELCRQVMALEPASIAIVENSEFNLYRIEQELLKSFPGIPVELS--LISVTDEIAINH  357
            IGSE+CRQV  ++P  I ++ ++E ++Y I+QEL K++ G  +E+   +  V +   I +
Sbjct  293  IGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTY-GNRIEFVPVIADVQNKTRILE  351

Query  358  LFRRFQPEIVFHAAAYKHVPMLQHQVRVAVFNNVIGTQVVAKASVTFGAEKFILISTDKA  417
            +   F+P  V+HAAA KHVP+++ + + A+ NN++GT+ VA ++      KF++ISTDKA
Sbjct  352  VMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKA  411

Query  418  VNPTNIMGTTKRVAEIYCQNLN-ARVKTQFITVRFGNVLGSAGSVVPLFQKQLQEGGPLT  476
            VNP+N+MG+TKR+AE+  Q+LN    KT F++VRFGNVLGS GSV+PLF++Q++ GGP+T
Sbjct  412  VNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVT  471

Query  477  VTHPDMQRYFMTIPEACQLILQAMVNGEGGEIFVLDMGEPVKISYLAEQMIRLAGKEPGR  536
            VTHP+M RYFMTIPEA +L+LQA   ++GGE+FVLDMG PVKI  LA ++IRL+GK    
Sbjct  472  VTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEE-  530

Query  537  DIMIEYTGLRPGEKMYEELFHETEQLTSTKHEKLFKAR  574
            DI IE++G+RPGEK+YEEL++  E       EK+++++
Sbjct  531  DIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGK  568

400) cap1D in NC_018220


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  297 bits (1114),  Expect = 9e-82, Method: Compositional matrix adjust.
 Identities = 204/487 (42%), Positives = 334/487 (69%), Gaps = 46/487 (9%)

Query  124  FNYWWLSMVIIGGLRL---IMRQYFLGDWFTGAHQIPFANRDDGLVKVAIYGAGTAGNQL  180
            F  W + +++IGG RL   + R+YF+++           ++   LV     GAG +G+ L
Sbjct  109  FITWMMHLLLIGGSRLFWRVYRRYFIDNA---------VEKKATLVV----GAGQGGSVL  155

Query  181  LAALRMGRAMR--PVAFIDDDSDLANRVISG---LQVYKPKHLQQMIKETGAQEILLALP  235
            +  +  ++ MR  PV  +DDD +  +  I+    +Q Y   ++ +++K    + I++A+P
Sbjct  156  IREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGY-VEDIPELVKKFRIKKIIIAIP  214

Query  236  SVSRARRKEILALLEPYPLHVRSVPAFADLASGRVKVDDIQDVDIADLLGRDPVPAKEGL  295
            ++S+ R +EI  + +   +++  +P + D+ SG + V++++ V++ DLLGRDPV    +L
Sbjct  215  TLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMAL  274

Query  296  LERCIHKQTVLVTGAGGSIGSELCRQIIGLGPTTLLLFDHSEYNLYAILSELEQRVARES  355
            + R + ++T+LVTGAGGSIGSE+CRQ+  ++P  ++L++H+E ++Y+I  EL +  +   
Sbjct  275  ISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGN--  332

Query  356  LPVRLLPILGSVRNQQHLAHVMSTWRVATVYHAAAYKHVPMVEHNMAEGILNNVFGTLCT  415
              + ++P+++ V+N+ ++ +VM+  +  +VYHAAA KHVP++E N  E+I NN++GT   
Sbjct  333  -RIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNV  391

Query  416  AQAALQSGVANFVLISTDKAVRPTNVMGGTKRLSELILQALSREAAPVMYGDSSKIARVN  475
            A++A ++ V++FV+ISTDKAV P+NVMG+TKR++E+++Q+L+ + +              
Sbjct  392  AESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNS--------------  437

Query  476  KTRFTMVRFGNVLGSSGSVIPLFHKQIKAGGPITVTHPKITRYFMTIPEAAQLVVQAGAM  535
            KT F  VRFGNVLGS GSVIPLF +QI +GGP+TVTHP +TRYFMTIPEA++LV+QAGA+
Sbjct  438  KTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGAL  497

Query  536  GQGGDVFVLDMGEPVKIVELAEKMIHLSGLSVRSSGNPNGDIAIEFTGLRPGEKLFEELL  595
            +QGG+VFVLDMG PVKIV+LA ++I+L       SG+ + DI+IEF+G+RPGEKL+EELL
Sbjct  498  AQGGEVFVLDMGKPVKIVDLAKNLIRL-------SGKKEEDIGIEFSGIRPGEKLYEELL  550

Query  596  IGDDVSP  602
              +++ P
Sbjct  551  NKNEIHP  557

401) lpp1028 in NC_006368


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  296 bits (1110),  Expect = 2e-81, Method: Compositional matrix adjust.
 Identities = 220/518 (43%), Positives = 348/518 (68%), Gaps = 19/518 (3%)

Query  67   YYFKIYRGLWRFSSLNDVIRILKATITAMVLVIPVFYLTSILQHLPRSVFPLYCI--ILA  124
            Y F++Y+  W ++S+++++ +LKA  +++V+ +        L     + + LY I  ++ 
Sbjct  60   YVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLL----LVSLLISESPFLRLYFITWMMH  115

Query  125  TILCGGRLVIRLHWDKPGR--GNRELETKRVLVVGAGQAGEGLVRDLKRSSYYR--PIGF  180
             +L GG    RL W    R   +  +E K  LVVGAGQ+G  L+R++ RS   R  P+  
Sbjct  116  LLLIGGS---RLFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLA  172

Query  181  IDDNKSKRGLEVHG-VRVLGTTNQITELVNQYDVDLIFIAIPSAKSATMRRIVTLCEQSH  239
            +DD+K+K+ + +   V+V G  ++I ELV+++ +  I+IAIP+     +  I  +C+   
Sbjct  173  VDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEG  232

Query  240  VPFSTLPSISALAAGRVEVNALRPVNIEDLLGRDQVTLEWEKIARSiagrrilitggggs  299
            V +  +P+I  + +G +EVN L+ V++EDLLGRD V L+   I+R ++ + IL+TG+GGS
Sbjct  233  VELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGS  292

Query  300  igsELCRQVMALEPASIAIVENSEFNLYRIEQELLKNFPGIPVELS--LISVTDEIAINH  357
            IGSE+CRQV  ++P  I ++ ++E ++Y I+QEL K + G  +E+   +  V +   I +
Sbjct  293  IGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTY-GNRIEFVPVIADVQNKTRILE  351

Query  358  LFRRFQPEIVFHAAAYKHVPMLQHQVRVAVFNNVIGTQVVAKASVTFGAEKFILISTDKA  417
            +   F+P  V+HAAA KHVP+++ + + A+ NN++GT+ VA ++      KF++ISTDKA
Sbjct  352  VMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKA  411

Query  418  VNPTNIMGTTKRVAEIYCQNLN-TRVKTQFITVRFGNVLGSAGSVVPLFQKQLQEGGPLT  476
            VNP+N+MG+TKR+AE+  Q+LN    KT F++VRFGNVLGS GSV+PLF++Q++ GGP+T
Sbjct  412  VNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVT  471

Query  477  VTHPDMQRYFMTIPEACQLILQAMVNGEGGEIFVLDMGEPVKISYLAEQMIRLAGKEPGR  536
            VTHP+M RYFMTIPEA +L+LQA   ++GGE+FVLDMG PVKI  LA ++IRL+GK    
Sbjct  472  VTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEE-  530

Query  537  DIMIEYTGLRPGEKMYEELFHETEQLTSTKHEKLFKAR  574
            DI IE++G+RPGEK+YEEL++  E       EK+++++
Sbjct  531  DIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGK  568

402) LPE509_02241 in NC_020521


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  296 bits (1109),  Expect = 2e-81, Method: Compositional matrix adjust.
 Identities = 220/518 (43%), Positives = 348/518 (68%), Gaps = 19/518 (3%)

Query  71   YYFKIYRGLWRFSSLNDVIRILKATITAMVLVIPVFYLTSILQHLPRSVFPLYCI--ILA  128
            Y F++Y+  W ++S+++++ +LKA  +++V+ +        L     + + LY I  ++ 
Sbjct  60   YVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLL----LVSLLISESPFLRLYFITWMMH  115

Query  129  TILCGGRLVIRLHWDKPGR--GNRELETKRVLVVGAGQAGEGLVRDLKRSSYYR--PIGF  184
             +L GG    RL W    R   +  +E K  LVVGAGQ+G  L+R++ RS   R  P+  
Sbjct  116  LLLIGGS---RLFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLA  172

Query  185  IDDNKSKRGLEVHG-VRVLGTTNQITELVNQYDVDLIFIAIPSAKSATMRRIVTLCEQSH  243
            +DD+K+K+ + +   V+V G  ++I ELV+++ +  I+IAIP+     +  I  +C+   
Sbjct  173  VDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEG  232

Query  244  VPFSTLPSISALAAGRVEVNALRPVNIEDLLGRDQVTLEWEKIARSiagrrilitggggs  303
            V +  +P+I  + +G +EVN L+ V++EDLLGRD V L+   I+R ++ + IL+TG+GGS
Sbjct  233  VELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGS  292

Query  304  igsELCRQVMALEPASIAIVENSEFNLYRIEQELLKNFPGIPVELS--LISVTDEIAINH  361
            IGSE+CRQV  ++P  I ++ ++E ++Y I+QEL K + G  +E+   +  V +   I +
Sbjct  293  IGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTY-GNRIEFVPVIADVQNKTRILE  351

Query  362  LFRRFQPEIVFHAAAYKHVPMLQHQVRVAVFNNVIGTQVVAKASVTFGAEKFILISTDKA  421
            +   F+P  V+HAAA KHVP+++ + + A+ NN++GT+ VA ++      KF++ISTDKA
Sbjct  352  VMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKA  411

Query  422  VNPTNIMGTTKRVAEIYCQNLN-TRVKTQFITVRFGNVLGSAGSVVPLFQKQLQEGGPLT  480
            VNP+N+MG+TKR+AE+  Q+LN    KT F++VRFGNVLGS GSV+PLF++Q++ GGP+T
Sbjct  412  VNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVT  471

Query  481  VTHPDMQRYFMTIPEACQLILQAMVNGEGGEIFVLDMGEPVKISYLAEQMIRLAGKEPGR  540
            VTHP+M RYFMTIPEA +L+LQA   ++GGE+FVLDMG PVKI  LA ++IRL+GK    
Sbjct  472  VTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEE-  530

Query  541  DIMIEYTGLRPGEKMYEELFHETEQLTSTKHEKLFKAR  578
            DI IE++G+RPGEK+YEEL++  E       EK+++++
Sbjct  531  DIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGK  568

403) VS_0234 in NC_011753


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  296 bits (1107),  Expect = 3e-81, Method: Compositional matrix adjust.
 Identities = 213/454 (47%), Positives = 316/454 (70%), Gaps = 22/454 (4%)

Query  122  LLCGGSRL---VVRNLVATTSKDPREEVLIYGAGSGGRQLAVALRASENYRIRAF--IDE  176
            LL GGSRL   V R      + + +  +++ GAG GG  L   +  S++ R+++   +D+
Sbjct  117  LLIGGSRLFWRVYRRYFIDNAVEKKATLVV-GAGQGGSVLIREMLRSQDMRMQPVLAVDD  175

Query  177  DKTLINTMILGLPVIE--LDKSETLINKYATSKILLAIPSASRARRKQVLDLLAPLPVEI  234
            DK   +  I     ++  ++    L++K+   KI++AIP+ S+ R +++  +     VE+
Sbjct  176  DKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVEL  235

Query  235  QTVPDMADIVSGKAKIDELTDVPIEDLLGRDAVTPQQVLMEANIKGKVVMVTGAGGSIGS  294
              +P++ D++SG   +++L  V +EDLLGRD+V  +  L+  ++  K ++VTGAGGSIGS
Sbjct  236  FKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGS  295

Query  295  ELCRQILKQQPKTLVLFEVSEFGLYQIDRELSLISENEGYDIDIVPLLGSVQRPHRLLTS  354
            E+CRQ+ K +P+ ++L+  +E ++Y I++ELS      G  I++VP+++ VQ   R+L  
Sbjct  296  EICRQVSKFDPQKIILLGHGENSIYSIHQELS---KTYGNRIEFVPVIADVQNKTRILEV  352

Query  355  MKSFGVQTVYHAAAYKHVPLVEYNVVEGVRNNIYGTYYTANAAIEAGVESFVLISTDKAV  414
            M+ F   +VYHAAA KHVPL+EYN  E++RNNI GT   A++A E+ V  FV+ISTDKAV
Sbjct  353  MNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAV  412

Query  415  RPTNVMGTTKRMAELGLQALAQQENPKESGTRFCMVRFGNVLGSSGSVIPLFKKQIKAGG  474
             P+NVMG+TKR+AE+ +Q+L +++    S T F  VRFGNVLGS GSVIPLFK+QI +GG
Sbjct  413  NPSNVMGATKRIAEMVIQSLNEDN----SKTSFVAVRFGNVLGSRGSVIPLFKNQIESGG  468

Query  475  PLTVTHPDITRFFMTIPEAAQLVIQAGAMGKGGDVFVLDMGESVKITDLAENLIRLSGLS  534
            P+TVTHP++TR+FMTIPEA++LV+QAGA+++GG+VFVLDMG +VKI DLA NLIRLSG  
Sbjct  469  PVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG--  526

Query  535  VKNEDNQHGDIEIKFSGLRPGEKLYEELLIGDNV  568
             K+E+    DI I FSG+RPGEKLYEELL  +++
Sbjct  527  -KKEE----DIGIEFSGIRPGEKLYEELLNKNEI  555

404) VSAL_I3033 in NC_011312


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  296 bits (1108),  Expect = 3e-81, Method: Compositional matrix adjust.
 Identities = 208/460 (46%), Positives = 326/460 (71%), Gaps = 33/460 (7%)

Query  124  VGGSRLI----IRSLVAQSSNKSGNPVLIYGAGSAGRQLA---LALRQSRTHKVVGFVDE  176
            +GGSRL+     R ++ ++ +K  ++ L+ GAG +G  L    L  ++ R + V++ VD+
Sbjct  119  IGGSRLFWRVYRRYFIDNAVEK--KATLVVGAGQGGSVLIREMLRSQDMRMQPVLA-VDD  175

Query  177  DPTLQNTMM---MGLYVYTAACAEKIIINHGVKQILLAIPSASRRRRKKVLDTISLLPVE  233
            D   Q+  +   + +  Y    +E ++ +  +K+I++AIP+ S++R + +    ++  VE
Sbjct  176  DKNKQKMTITERVKVQGYVEDIPE-LVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVE  234

Query  234  IRTVPDMSDIVAGNASIDELKDVSIDDLLGRDPVAPQQALMEANIKDKVVMVTGAGGSIG  293
            +  +P++ D+++G+  +++LK V ++DLLGRDPV  + AL+  ++ +K ++VTGAGGSIG
Sbjct  235  LFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIG  294

Query  294  SELCRQIVRNKPKALVLFELSEFALYQIDRELSLLVEAEGLGIQIIPLLGSVQRINRLSK  353
            SE+CRQ+ +  P+ ++L+  +E ++Y I++ELS    + G  I+++P+++ VQ   R+  
Sbjct  295  SEICRQVSKFDPQKIILLGHGENSIYSIHQELS---KTYGNRIEFVPVIADVQNKTRILE  351

Query  354  VMGSFKVQTVYHAAAYKHVPLVEYNVVEGVRNNVFGTNYTARAAIEAKVESFVLISTDKA  413
            VM  FK  +VYHAAA KHVPL+EYN  E++RNN++GT+  A +A E+ V  FV+ISTDKA
Sbjct  352  VMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKA  411

Query  414  VRPTNIMGTTKRMAELGLQALAEQQNKIRAKDATAGTRFCMVRFGNVLGSSGSVVPVFKR  473
            V P+N+MG+TKR+AE+ +Q+L E+++K         T F  VRFGNVLGS GSV+P+FK 
Sbjct  412  VNPSNVMGATKRIAEMVIQSLNEDNSK---------TSFVAVRFGNVLGSRGSVIPLFKN  462

Query  474  QIENREPITVTHEEITRFFMTIPEAAQLVIQAGAMGKGGDVFVLDMGESVKIVDLAKNLI  533
            QIE+  P+TVTH E+TR+FMTIPEA++LV+QAGA+++GG+VFVLDMG +VKIVDLAKNLI
Sbjct  463  QIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLI  522

Query  534  RLSGLEVKDESNPYGDIEIHYTGLRPGEKLYEELLIGDNV  573
            RLSG   K+E     DI I+++G+RPGEKLYEELL  +++
Sbjct  523  RLSG--KKEE-----DIGIEFSGIRPGEKLYEELLNKNEI  555

405) VP0235 in NC_004603


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  296 bits (1107),  Expect = 3e-81, Method: Compositional matrix adjust.
 Identities = 210/466 (46%), Positives = 319/466 (69%), Gaps = 27/466 (5%)

Query  140  STQSKEVLIYGAGSGGRQLAMALRSSGDYRVRAFID-GDSTLCNTMILGLPVIA---IED  195
            + + K  L+ GAG GG  L   +  S D R+++ +  +D    + M +   V     +ED
Sbjct  137  AVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVED  196

Query  196  AMPIINKYDVSQVLLAVPSAKRSRRKVILDELAKL----PVEVLTVPDMTDIVSGKAKID  251
               +++K+ + ++++A+P+  + R    L+E+ K+     VE++ +P++ D++SG   ++
Sbjct  197  IPELVKKFRIKKIIIAIPTLSQKR----LNEINKICNIEGVELFKMPNIEDVLSGELEVN  252

Query  252  ELKDVAIEDLLGRDPVAPQQVLLEANIKDKVVMVTGAGGSIGSELCRQIVEQSPKSIILF  311
            +LK V +EDLLGRDPV  +  L+  ++ +K ++VTGAGGSIGSE+CRQ+    P+ IIL+
Sbjct  253  NLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILL  312

Query  312  ELSEFGLYQIDRELNQLKLEKGLTCDIIPLLGSVQRQHRLETTMSSFKVQTVYHAAAYKH  371
              +E ++Y I++EL++     G   +++P+++ VQ + R+   M+ FK  +VYHAAA KH
Sbjct  313  GHGENSIYSIHQELSK---TYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKH  369

Query  372  VPLVEFNVIEGVRNNIYGTYYTACAAIKAGVESFVLISTDKAVRPTNVMGTTKRMAELGL  431
            VPL+E+N  E++RNNI GT   A +A  + V  FV+ISTDKAV P+NVMG+TKR+AE+ +
Sbjct  370  VPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVI  429

Query  432  QALADQENAKPNGTRFCMVRFGNVLGSSGSVIPVFKKQIASGGPVTVTHPEITRFFMTIP  491
            Q+L ++++     T F  VRFGNVLGS GSVIP+FK+QI SGGPVTVTHPE+TR+FMTIP
Sbjct  430  QSLNEDNSK----TSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIP  485

Query  492  EAAQLVIQAGAMGKGGDVFVLDMGESVKITDLACNLIQLSGLEVKSDANPHGDIEIQFSG  551
            EA++LV+QAGA+++GG+VFVLDMG +VKI DLA NLI+LSG       + + DI I+FSG
Sbjct  486  EASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-------KKEEDIGIEFSG  538

Query  552  LRPGEKLYEELLIGDNVK-QTAHERIMTAHEVHLPLKEYELLLNDL  596
            +RPGEKLYEELL  +++  Q   E+I  +   H    E +L+++DL
Sbjct  539  IRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDL  584

406) Taci_0039 in NC_013522


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  296 bits (1107),  Expect = 3e-81, Method: Compositional matrix adjust.
 Identities = 237/533 (45%), Positives = 370/533 (70%), Gaps = 13/533 (2%)

Query  67   WRQSWRNSSVPDLIQLLKVMVAFVVIMSGVGFVLGPANMPLPRGIPFIDGAITLLLWGGI  126
             +++W  +SV++L+ +LK + +  ++++ +   L  ++ P+ R + FI   + LLL GG 
Sbjct  65   YHRAWEYASVSELMSVLKAVTS-SIVVTLLLVSLLISESPFLR-LYFITWMMHLLLIGGS  122

Query  127  RLLARGFHEREGHSGSHLRPVVIAGAGSAGTSLAREIQRNRSCGMRVAAFL--DDDPAKL  184
            RL+ R ++    +++ + ++ ++ GAG +G+ L RE+ R++  +MR+ + L  DDD  K 
Sbjct  123  RLFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQ--DMRMQPVLAVDDDKNKQ  180

Query  185  KMTILG-VPVAGTLDQLGEVLDRFGASEVLIAMPSAPGSAVRLVMEQassrrvrariipa  243
            KMTI   V V G ++++ E++ +F    ++IA+P+ +   +  +    +   V    +P 
Sbjct  181  KMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPN  240

Query  244  iaEVLSGRVSLDLVRDVEVEDLLRREAVRLDLDEIGSYLRGQRVMITGAGGSIGSELVRQ  303
            I +VLSG + ++ ++ VEVEDLL R++V LD+  I+  L  + +++TGAGGSIGSE+ RQ
Sbjct  241  IEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQ  300

Query  304  AIPFGPSLLVLLGRGENSLHQLEMEL-KGMDPVPPFvtvvadvrdrtrLGRVIARYRPSV  362
               F+P  ++LLG+GENS+  ++ EL K  +    FV V+ADV+++TR+  V+  ++P  
Sbjct  301  VSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYA  360

Query  363  VFHAAAHKHVPMMEEHPEEAVKNNVLGTLNVVECCIEAGVSTLVNISTDKAVNPTSVMGA  422
            V+HAAAHKHVP+ME +P+EA++NN+LGT NV E   E+ VS +V ISTDKAVNP++VMGA
Sbjct  361  VYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGA  420

Query  423  SKRLAEMVVRRVADRVPPGGAYVSVRFGNVLGSRGSVVPLFKEQIRRGGPVTVTDPEMVR  482
            +KR+AEMV++ + +   +  ++V+VRFGNVLGSRGSV+PLFK+QI  GGPVTVT+PEM R
Sbjct  421  TKRIAEMVIQSLNED-NSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTR  479

Query  483  YFMTIPEAAQLVLQAGGMGMNGAVFVLDMGEPVRIVDMARDLIRLSGLEPDRDIRIEFTG  542
            YFMTIPEA++LVLQAG+++  G VFVLDMG PV+IVD+A++LIRLSG   + DI IEF+G
Sbjct  480  YFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIGIEFSG  538

Query  543  RRPGEKLYeelltaeegteaSRHSKIFVARTEH-MGLELDQVIQRL--SFAAE  592
             RPGEKLYEELL  +E        KI+ ++ +H +  E+D +++ L  +F+ E
Sbjct  539  IRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSKE  591

407) RBR_04740 in NC_021013


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  295 bits (1106),  Expect = 3e-81, Method: Compositional matrix adjust.
 Identities = 215/461 (47%), Positives = 312/461 (68%), Gaps = 18/461 (3%)

Query  121  FRFVFRRTFLDLTEAGRAEGGERTLIVGAGNAGRMIVREIHNAKEQGDVNNPSKSIIPVC  180
            F+ V+RR F+D +   +A     TL+VGAG++G +++RE+        + +    + PV 
Sbjct  125  FWRVYRRYFIDNAVEKKA-----TLVVGAGQGGSVLIREM--------LRSQDMRMQPVL  171

Query  181  FVDDDLKKLNQKI-EGIPIVGTCPEIVKICDEYRIDNIIVAVPSCEEDEKRKILDYCSAT  239
             VDDD +K +  I E + + G   +I  +   +RI +II+A+P+  +     I   C+  
Sbjct  172  AVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIE  231

Query  240  ECKIKIIPYLGELLFDDGHTQLISQAKEIKIEDLLGRKPIEFDRKEIHDLINGKICLVTG  299
               +  +P + ++L   G+ + +++ K + +EDLLGR P+E+D   I   +  K  LVTG
Sbjct  232  GVELFKMPNIEDVL--SGELE-VNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTG  288

Query  300  GGGSIGSELVRQIAKNDPKQIIIVDIYENNAYDIQQELVLEYGTKLNLVTLISSVRDYDK  359
            +GGSIGSE+ RQ++K DP++II+++  EN+ Y I+QEL   YG ++++V +I+ V++  +
Sbjct  289  AGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTR  348

Query  360  MELIFKTYRPELVFHAAAHKHVPLMETVPEEAVKNNIFGTFNVATLAEKYKAKKFVMIST  419
            +  + + ++P  V+HAAAHKHVPLME  P+EA++NNI+GT NVA  A      KFVMIST
Sbjct  349  ILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMIST  408

Query  420  DKAVNPTNVMGATKRACEMIIQYKAQHSTATEFVTTRFGNVLGSNGSVIPLFRRQIENGA  479
            DKAVNP+NVMGATKR  EM+IQ   ++++ T FV+ RFGNVLGS GSVIPLF+ QIE+G+
Sbjct  409  DKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGG  468

Query  480  PVTVTHPDIIRYFMTIPEAVSLVLEAGAMAKGGEIFVLDMGAPVKITTLAENLIRMYGKV  539
            PVTVTHP++ RYFMTIPEA  LVL+AGA+A+GGE+FVLDMG PVKI  LA NLIR+ GK 
Sbjct  469  PVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKK  528

Query  540  PYKDVPIIFTGLRPGEKLFEELLMDEEGLKSTQNKKIFIGN  580
               D+ I F+G+RPGEKL+EELL  +E        KI+ G+
Sbjct  529  E-EDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGK  568

408) wbfY in NC_015964


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  295 bits (1106),  Expect = 4e-81, Method: Compositional matrix adjust.
 Identities = 210/458 (46%), Positives = 321/458 (71%), Gaps = 31/458 (6%)

Query  120  FLLCGSARML----VRYYVSLILDKDNESVLIYGAGTTGRQLAVLLKHAYRY---RIRGF  172
            +LL G++R++     RY++   ++K   + L+ GAG  G   +VL+++  R    R++  
Sbjct  116  LLLIGGSRLFWRVYRRYFIDNAVEKK--ATLVVGAGQGG---SVLIREMLRSQDMRMQPV  170

Query  173  ID-DNAKLHGSYLLGNKIFSP---NDIPKLVQKYNIKVILLAIPSASRSERKTIIDSLIP  228
            +  D+ K      + +++      +DIP LV+K+ IK I++AIP+ S+  R   I+ +  
Sbjct  171  LAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQK-RLNEINKICN  229

Query  229  LK-IKVQTIPDMEEILQGNAKIDELREVNIEDLLGREPVLPNKDLLQKNILHKVVMVTGA  287
            +  + +  +P++E++L G+  +++L+ V++EDLLGR+PV  +  L+ +++ +K ++VTGA
Sbjct  230  IEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGA  289

Query  288  GGSIGSELCRQIILNEPNILILFEVSEFSLYSIHQELLEIAKKNNVVNTKIYPVLGNVQD  347
            GGSIGSE+CRQ+   +P+ +IL+  +E S+YSIHQEL     K       + PV+++VQ+
Sbjct  290  GGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQEL----SKTYGNRIEFVPVIADVQN  345

Query  348  IERLDRVLSHFSVDTIYHAAAYKHVPLVEYNMIEGVQNNVFGTYNVARCAAEHGVKSFVL  407
              R+  V+++F   ++YHAAA KHVPL+EYN  E+++NN++GT NVA  A E  V  FV+
Sbjct  346  KTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVM  405

Query  408  ISTDKAVRPTNVMGASKRMAELCLQALSEQLKDYQTCFSMVRFGNVLGSSGSVIPLFRKQ  467
            ISTDKAV P+NVMGA+KR+AE+ +Q+L+E+  + +T F  VRFGNVLGS GSVIPLF++Q
Sbjct  406  ISTDKAVNPSNVMGATKRIAEMVIQSLNED--NSKTSFVAVRFGNVLGSRGSVIPLFKNQ  463

Query  468  ILKGGPITITHPDIIRYFMTIPEAAQLVIQAGAMAKGGDVFILDMGEPVKIVDLAKNLIQ  527
            I  GGP+T+THP++ RYFMTIPEA++LV+QAGA+A+GG+VF+LDMG PVKIVDLAKNLI+
Sbjct  464  IESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIR  523

Query  528  LSGLSVKDENNPKGDIEITYTGLRPGEKLYEELLIGGD  565
            LSG       +   DI I ++G+RPGEKLYEELL   +
Sbjct  524  LSG-------KKEEDIGIEFSGIRPGEKLYEELLNKNE  554

409) M636_20595 in NC_021848


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  295 bits (1106),  Expect = 4e-81, Method: Compositional matrix adjust.
 Identities = 209/467 (45%), Positives = 320/467 (69%), Gaps = 31/467 (6%)

Query  122  LFCGGPRV---IVRSLIAQSYSTQSKEVLIYGAGSGGRQLAMALRSCGDYRVRAFID-GD  177
            L+ GG+R+   + R  + ++ + + K  L+ GAG GG  L   +    D R+++ +  +D
Sbjct  117  LLIGGSRLFWRVYRRYFIDN-AVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDD  175

Query  178  STLCNTMILGLPVIA---IEDAMPIINKYDVSQVLLAVPSAKRSRRKVILDELAKL----  230
                + M +   V     +ED   +++K+ + ++++A+P+  + R    L+E+ K+    
Sbjct  176  DKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKR----LNEINKICNIE  231

Query  231  PVEVLTVPDMTDIVSGKAKIDELKDVAIEDLLGRDPVAPQQVLLEANIKDKVVMVTGAGG  290
             VE++ +P++ D++SG   +++LK V +EDLLGRDPV  +  L+  ++ +K ++VTGAGG
Sbjct  232  GVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGG  291

Query  291  SIGSELCRQIVEQSPKSIILFELSEFGLYQIDRELNQLKIEKGLTCDIIPLLGSVQRQHR  350
            SIGSE+CRQ+    P+ IIL+  +E ++Y I++EL++     G   +++P+++ VQ + R
Sbjct  292  SIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSK---TYGNRIEFVPVIADVQNKTR  348

Query  351  LETTMSSFKVQTVYHAAAYKHVPLVEFNVIEGVRNNIYGTYYTACAAIKAGVESFVLIST  410
            +   M+ FK  +VYHAAA KHVPL+E+N  E++RNNI GT   A +A  + V  FV+IST
Sbjct  349  ILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMIST  408

Query  411  DKAVRPTNVMGTTKRMAELGLQALADQENAKPNGTRFCMVRFGNVLGSSGSVIPVFKKQI  470
            DKAV P+NVMG+TKR+AE+ +Q+L ++++     T F  VRFGNVLGS GSVIP+FK+QI
Sbjct  409  DKAVNPSNVMGATKRIAEMVIQSLNEDNSK----TSFVAVRFGNVLGSRGSVIPLFKNQI  464

Query  471  ASGGPVTVTHPEITRFFMTIPEAAQLVIQAGAMGKGGDVFVLDMGEPVKITDLACNLIQL  530
             SGGPVTVTHPE+TR+FMTIPEA++LV+QAGA+++GG+VFVLDMG PVKI DLA NLI+L
Sbjct  465  ESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRL  524

Query  531  SGLEVKSENNPHGDIEIQFTGLRPGEKLYEELLIEDNVK-QTAHERI  576
            SG       + + DI I+F+G+RPGEKLYEELL  +++  Q   E+I
Sbjct  525  SG-------KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKI  564

410) PSJM300_08115 in NC_018177


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  295 bits (1105),  Expect = 4e-81, Method: Compositional matrix adjust.
 Identities = 213/489 (44%), Positives = 331/489 (68%), Gaps = 46/489 (9%)

Query  99   FNYWWLSLVLIGGLRL---VMRQYFMGDWFSPDSLMKFKGRDASLPKVAVYGAGAAGNQL  155
            F  W + L+LIGG RL   V R+YF+++  + +       + A+L    V GAG +G+ L
Sbjct  109  FITWMMHLLLIGGSRLFWRVYRRYFIDN--AVE-------KKATL----VVGAGQGGSVL  155

Query  156  VAALRLGRAMR--PVAFIDDDPNLFNRTIAG---LRVYSPKHIQQMIDETGADEILLAIP  210
            +  +  ++ MR  PV  +DDD N  + TI+    ++ Y   +I +++       I++AIP
Sbjct  156  IREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYV-EDIPELVKKFRIKKIIIAIP  214

Query  211  SASRGRRREVLETLEPYPLHVRSVPGFMDLASGRVKVEDIQEVDIADLLGRDAVPPQQAL  270
            + S+ R  E+    +   +++  +P + D+ SG + V++++ V++ DLLGRD+V  + AL
Sbjct  215  TLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMAL  274

Query  271  FEQCIIDKVVMVTGAGGSIGSELCRQILANKPRTLLLFEHSEFNLYSIHIELERTIERAS  330
            + + + +K ++VTGAGGSIGSE+CRQ+    P+ ++L+ H+E ++YSIH EL +T     
Sbjct  275  ISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGN--  332

Query  331  LPVRLVPIMGSIRNPERLLDVMRTWQVETIYHAAAYKHVPMVEHNVAEGVLNNVLGTMNT  390
              + +VP+++ ++N  R+L+VM   +  ++YHAAA KHVP++E N  E++ NN+LGT N 
Sbjct  333  -RIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNV  391

Query  391  AQAAVQAGVANFVLISTDKAVRPTNVMGSTKRVAEMILQALSRETAPVLFGADDAVHHVN  450
            A++A ++ V++FV+ISTDKAV P+NVMG+TKR+AEM++Q+L+ + +              
Sbjct  392  AESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNS--------------  437

Query  451  KTRFTMVRFGNVLGSSGSVIPRFYQQIRNGGPVTVTHPKITRYFMTIPEAAQLVIQAGSM  510
            KT F  VRFGNVLGS GSVIP F +QI +GGPVTVTHP +TRYFMTIPEA++LV+QAG++
Sbjct  438  KTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGAL  497

Query  511  GQGGDVFVLDMGQPVKIAELAEKLIHLSGLSVRSEKSPHGDIAIEFTGLRPGEKLYEELL  570
            +QGG+VFVLDMG+PVKI +LA +LI+LSG         + DI+IEF+G+RPGEKLYEELL
Sbjct  498  AQGGEVFVLDMGKPVKIVDLAKNLIRLSG-------KKEEDIGIEFSGIRPGEKLYEELL  550

Query  571  IGDNVSATE  579
              +++ + +
Sbjct  551  NKNEIHPQQ  559

411) ACIAD0096 in NC_005966


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  295 bits (1106),  Expect = 4e-81, Method: Compositional matrix adjust.
 Identities = 210/505 (42%), Positives = 360/505 (72%), Gaps = 31/505 (6%)

Query  110  LRLAFVP--MSIPIIFASLLFAWVWCSRAFIRIVINNTLYSHTEKTRVAIYGAGNAGQQM  167
            LRL F+   M + +I +S LF   W  R + R  I+N++    EK    + GAG++G  +
Sbjct  105  LRLYFITWMMHLLLIGGSRLF---W--RVYRRYFIDNAV----EKKATLVVGAGQGGSVL  155

Query  168  ALALERSPNH--IPVLFLDDHVGLQG-QMVQGLKV--YSPRQLNELKQRFHLHEILLAIP  222
               + RS +    PVL +DD+   Q   + + +KV  Y   ++ EL ++F++  I++AIP
Sbjct  156  IREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVE-DIPELVKKFRIKKIIIAIP  214

Query  223  SIGRQRKMQVIQQLESL-ALKVREIPSVEQIIDGQLHVSDIREVDIETLLGREPVPPNVE  281
            +++ Q++++ I+++ ++ ++ +  +P++E+++ G+L+V++++ V++E LLGR+PV  ++ 
Sbjct  215  TLS-QKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMA  273

Query  282  LLDKNIRDKVVLVTGAGGSIGSELCRQILQRQPKLLILFEQSEFSLYSIHQELQQ---RH  338
            L+ +++ +K +LVTGAGGSIGSE+CRQ+ + +P+ +IL+ ++E S+YSIHQEL +    +
Sbjct  274  LISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNR  333

Query  339  QALIPILGSVFNEKKLTRIMQQYQVQTVYHAAAYKHVPLVEANPIEGLRNNSVGTAKSLN  398
              ++P+++ V N  ++  +M++++  +VYHAAA KHVPL+E NP E++RNN +GT +  +
Sbjct  334  IEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAE  393

Query  399  AAVTAGVETFVLISTDKAVRPTNVMGASKRLAELYCQAVAASQPKTKISIVRFGNVLGSS  458
            +A  + V  FV+ISTDKAV P+NVMGA+KR+AE+  Q++   ++KT +  VRFGNVLGS 
Sbjct  394  SAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSR  453

Query  459  GSVVPLFKKQIAAGGPITVTHPDVTRYFMTIPEAALLVIQAGAMGEGGDVFLLDMGESVK  518
            GSV+PLFK+QI +GGP+TVTHP++TRYFMTIPEA+ LV+QAGA+++GG+VF+LDMG +VK
Sbjct  454  GSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVK  513

Query  519  IRDLALQMIALSGLKLKEGAEDEGDIEIHYTGLRPGEKLYEELLIEQSNVQP-TAHERIV  577
            I DLA ++I LSG K       E DI I+++G+RPGEKLYEELL ++++++P    E+I 
Sbjct  514  IVDLAKNLIRLSGKK-------EEDIGIEFSGIRPGEKLYEELL-NKNEIHPQQVYEKIY  565

Query  578  KSYEKQFALEQIKILIDLIQHSYTH  602
            ++   ++   ++ ++++ + ++++ 
Sbjct  566  RGKVDHYIKTEVDLIVEDLINNFSK  590

412) Sputcn32_2527 in NC_009438


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  295 bits (1104),  Expect = 6e-81, Method: Compositional matrix adjust.
 Identities = 220/496 (45%), Positives = 350/496 (71%), Gaps = 30/496 (6%)

Query  121  LVFVGGARSL----MRSLVGAGINRRGEPVVIYGAGVSGRQTAIALAQSHEY--HPIAFV  174
            L+++GG+R +     R +++ ++++++  VV  GAG +G      + +S++   +P+  V
Sbjct  116  LLLIGGSRLFWRVYRRYFIDNAVEKKATLVV--GAGQGGSVLIREMLRSQDMRMQPVLAV  173

Query  175  DDDECLQG-TVIQGLHVHT-PQVLHKLIKQKAATRVLLAMPSASRSRRQEI--IAQLEPL  230
            DDD   Q  T+ + + V+   + +  L+K+    ++++A+P+ S+ R +EI  I ++E  
Sbjct  174  DDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIE--  231

Query  231  TVKVMTLPAMADLVSGDKLFSDVKEVEIEDLLGRDSVAPRQNLLTANIKNKVVMVTGAGG  290
             V +  +P + D++SG+   +++K VE+EDLLGRD+V     L++ ++ NK ++VTGAGG
Sbjct  232  GVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGG  291

Query  291  SIGSELCRQILKQSPKKLVLFELSEFALYSIERELCATAAELGLELDILPIMGSVQRENR  350
            SIGSE+CRQ+ K  P+K++L+  +E ++YSI++EL  T    G  ++++P+++ VQ   R
Sbjct  292  SIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKT---YGNRIEFVPVIADVQNKTR  348

Query  351  VQAVMQAFKVQTVYHAAAYKHVPLVEHNVVEGVRNNVFGTLYTARAAIAAKVETFVLVST  410
            +  VM+ FK  +VYHAAA KHVPL+E N  E++RNN++GT   A +A  + V  FV++ST
Sbjct  349  ILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMIST  408

Query  411  DKAVRPTNIMGTTKRMaelalqalakeeHQTRFCMVRFGNVLGSSGSVVPLFRKQIANGG  470
            DKAV P+N+MG+TKR+AE+ +Q+L  ++ +T F  VRFGNVLGS GSV+PLF++QI +GG
Sbjct  409  DKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGG  468

Query  471  PVTVTHPEITRFFMTIPEASQLVIQAGAMGKGGDVFVLDMGKSVKIVDLAAKMIRLSGYE  530
            PVTVTHPE+TR+FMTIPEAS+LV+QAGA+++GG+VFVLDMGK+VKIVDLA ++IRLSG  
Sbjct  469  PVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG--  526

Query  531  VKDEDHPNGDIAIEFSGLRPGEKLYEELLIGDDVTGTD-HERIMTAH-ETYLPWSELELI  588
             K E+    DI+IEFSG+RPGEKLYEELL  +++   +  E+I  +  + Y+  +E++LI
Sbjct  527  -KKEE----DIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIK-TEVDLI  580

Query  589  FNRLDKACHEFNHEAI  604
             + L    ++F+ E +
Sbjct  581  VEDL---INNFSKEKL  593

413) CPS_0594 in NC_003910


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  294 bits (1101),  Expect = 1e-80, Method: Compositional matrix adjust.
 Identities = 213/466 (46%), Positives = 331/466 (72%), Gaps = 27/466 (5%)

Query  113  PFI---FIS--LCLILIGGSRV---SVRAVISHQRWHKKASVLIYGAGSSGRQLATAL--  162
            PF+   FI+  + L+LIGGSR+     R  + ++  +KKA++++ GAG +G  L   +  
Sbjct  103  PFLRLYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEKKATLVV-GAGQGGSVLIREMLR  161

Query  163  SQGPEYHAVAFIDDYKALQGQIIQG---IPVYSPEEISHVVERKTVQKILLAIPSASRAR  219
            SQ+   ++V  +DD K  Q   I     +  Y  E+I+++V +  ++KI++AIP+ S+ R
Sbjct  162  SQDMRMQPVLAVDDDKNKQKMTITERVKVQGYV-EDIPELVKKFRIKKIIIAIPTLSQKR  220

Query  220  RKQVLAKIDCLGIQVLTIPGMADIVEGKAKLEEFKDVGVEDLLGRDSVEPKPELMNADIA  279
             +++    +  G++++ +P + D++ G   ++++K V VEDLLGRD+VE    L++ +++
Sbjct  221  LNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELT  280

Query  280  DKVVMVTGAGGSIGSELCRQIIRLKPTKLVLFELSEFGLYTIDKELNE-YKQQHDLAVEV  338
            +K ++VTGAGGSIGSE+CRQ+ ++ P K++L+  +E ++Y+I++EL+  Y ++    +E 
Sbjct  281  NKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNR----IEF  336

Query  339  LPLLGSVQRVNRIETVMKSFAVQTVYHAAAYKHVPLVEHNVVEGVRNNVFGTYYAARAAI  398
            +P+++ VQ   RI  VM+ F   +VYHAAA KHVPL+E N  E++RNN++GT   A +A 
Sbjct  337  VPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAK  396

Query  399  NANVETFVLISTDKAVRPTNIMGTTKRMAELVLQALAKTQHSTRFCMVRFGNVLGSSGSV  458
            +++V  FV+ISTDKAV P+N+MG+TKR+AE+V+Q+L   +  T F  VRFGNVLGS GSV
Sbjct  397  EGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSV  456

Query  459  VPLFRKQIKNGGPVTLTHPDITRYFMTIPEASQLVIQAGAMGKGGDVFVLDMGDAVKIYD  518
            +PLF++QI +GGPVT+THP++TRYFMTIPEAS+LV+QAGA+++GG+VFVLDMG +VKI D
Sbjct  457  IPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVD  516

Query  519  LASNIIHLSGFSVKSAELPDGDIEIKCTGLRPGEKLYEELLIGDNV  564
            LA N+I+LSG   K  E    DI I  +G+RPGEKLYEELL  +++
Sbjct  517  LAKNLIRLSG---KKEE----DIGIEFSGIRPGEKLYEELLNKNEI  555

414) O3Y_01210 in NC_016944


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  294 bits (1100),  Expect = 1e-80, Method: Compositional matrix adjust.
 Identities = 199/453 (44%), Positives = 312/453 (69%), Gaps = 21/453 (4%)

Query  123  LTLGGPRIFIRTIYYHYYKR---QKPNVFIYGAGSTGRDLAYALIQGDEY--HPVIFLDD  177
            L +GG+R+F + +Y +Y+     +K   ++ GAG  G  L   ++++++   +PV+ +DD
Sbjct  117  LLIGGSRLF-WRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDD  175

Query  178  DPAKTGQIIFGLRVHHSSDFESLRNLYEPVKMLIAINNIGK--NTRIKLLERLSHW-PIE  234
            D  K  ++ +  RV   +  E + +L    ++   I  I    + R++ ++++ +   +E
Sbjct  176  DKNKQ-KMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVE  234

Query  235  IQSVPSVEDIAAGRAKATDVQDLDIADLLGRAPVEPDLALLQKNITEKSVMVTGAGGSIG  294
            +  +P++ED+ +G     +++ +++ DLLGR PVE D+AL+ +++T+K+++VTGAGGSIG
Sbjct  235  LFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIG  294

Query  295  SELCRQILAQKPKTLVLFELNEYNLYTIDQELQAIKQNLKLNTKIVAALGSVQRENRVKK  354
            SE+CRQ+    P+ ++L+   E ++Y+I+QEL     N      +V+ ++ VQ   R+  
Sbjct  295  SEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGN---RIEFVPVIADVQNKTRILE  351

Query  355  LMQAHQVETVYHAAAYKHVPLVEDNVIEGIRNNVFGTLACANAAIEAGVKNFTLISTDKA  414
            +M+  +  +VYHAAA KHVPL+E N  E+IRNN++GT   A++A E+ V +F +ISTDKA
Sbjct  352  VMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKA  411

Query  415  VRPTNIMGASKRMAELVLQALADKNSTTIFTMVRFGNVLGSSGSVVPLFKKQIRAGGPVT  474
            V P+N+MGA+KR+AE+V+Q+L + NS T F  VRFGNVLGS GSV+PLFK+QI +GGPVT
Sbjct  412  VNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVT  471

Query  475  VTHPDIIRYFMLIPEAAQLVIQAGAMSHNGQVFVLDMGEPVKIVDLAKRMIHLMGMKEFC  534
            VTHP++ RYFM IPEA++LV+QAGA+++ G+VFVLDMG PVKIVDLAK +I+L G K   
Sbjct  472  VTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKK---  528

Query  535  DGRSDEGDIEIKFTGLRPGEKLYEELLIGENVE  567
                 E DI I F+G+RPGEKLYEELL  ++++
Sbjct  529  -----EEDIGIEFSGIRPGEKLYEELLNKNEIH  556

415) VCD_001361 in NC_012668


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  294 bits (1100),  Expect = 1e-80, Method: Compositional matrix adjust.
 Identities = 199/453 (44%), Positives = 312/453 (69%), Gaps = 21/453 (4%)

Query  123  LTLGGPRIFIRTIYYHYYKR---QKPNVFIYGAGSTGRDLAYALIQGDEY--HPVIFLDD  177
            L +GG+R+F + +Y +Y+     +K   ++ GAG  G  L   ++++++   +PV+ +DD
Sbjct  117  LLIGGSRLF-WRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDD  175

Query  178  DPAKTGQIIFGLRVHHSSDFESLRNLYEPVKMLIAINNIGK--NTRIKLLERLSHW-PIE  234
            D  K  ++ +  RV   +  E + +L    ++   I  I    + R++ ++++ +   +E
Sbjct  176  DKNKQ-KMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVE  234

Query  235  IQSVPSVEDIAAGRAKATDVQDLDIADLLGRAPVEPDLALLQKNITEKSVMVTGAGGSIG  294
            +  +P++ED+ +G     +++ +++ DLLGR PVE D+AL+ +++T+K+++VTGAGGSIG
Sbjct  235  LFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIG  294

Query  295  SELCRQILAQKPKTLVLFELNEYNLYTIDQELQAIKQNLKLNTKIVAALGSVQRENRVKK  354
            SE+CRQ+    P+ ++L+   E ++Y+I+QEL     N      +V+ ++ VQ   R+  
Sbjct  295  SEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGN---RIEFVPVIADVQNKTRILE  351

Query  355  LMQAHQVETVYHAAAYKHVPLVEDNVIEGIRNNVFGTLACANAAIEAGVKNFTLISTDKA  414
            +M+  +  +VYHAAA KHVPL+E N  E+IRNN++GT   A++A E+ V +F +ISTDKA
Sbjct  352  VMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKA  411

Query  415  VRPTNIMGASKRMAELVLQALADKNSTTIFTMVRFGNVLGSSGSVVPLFKKQIRAGGPVT  474
            V P+N+MGA+KR+AE+V+Q+L + NS T F  VRFGNVLGS GSV+PLFK+QI +GGPVT
Sbjct  412  VNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVT  471

Query  475  VTHPDIIRYFMLIPEAAQLVIQAGAMSHNGQVFVLDMGEPVKIVDLAKRMIHLMGMKEFC  534
            VTHP++ RYFM IPEA++LV+QAGA+++ G+VFVLDMG PVKIVDLAK +I+L G K   
Sbjct  472  VTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKK---  528

Query  535  DGRSDEGDIEIKFTGLRPGEKLYEELLIGENVE  567
                 E DI I F+G+RPGEKLYEELL  ++++
Sbjct  529  -----EEDIGIEFSGIRPGEKLYEELLNKNEIH  556

416) rfbU in NC_016445


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  294 bits (1100),  Expect = 1e-80, Method: Compositional matrix adjust.
 Identities = 199/453 (44%), Positives = 312/453 (69%), Gaps = 21/453 (4%)

Query  123  LTLGGPRIFIRTIYYHYYKR---QKPNVFIYGAGSTGRDLAYALIQGDEY--HPVIFLDD  177
            L +GG+R+F + +Y +Y+     +K   ++ GAG  G  L   ++++++   +PV+ +DD
Sbjct  117  LLIGGSRLF-WRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDD  175

Query  178  DPAKTGQIIFGLRVHHSSDFESLRNLYEPVKMLIAINNIGK--NTRIKLLERLSHW-PIE  234
            D  K  ++ +  RV   +  E + +L    ++   I  I    + R++ ++++ +   +E
Sbjct  176  DKNKQ-KMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVE  234

Query  235  IQSVPSVEDIAAGRAKATDVQDLDIADLLGRAPVEPDLALLQKNITEKSVMVTGAGGSIG  294
            +  +P++ED+ +G     +++ +++ DLLGR PVE D+AL+ +++T+K+++VTGAGGSIG
Sbjct  235  LFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIG  294

Query  295  SELCRQILAQKPKTLVLFELNEYNLYTIDQELQAIKQNLKLNTKIVAALGSVQRENRVKK  354
            SE+CRQ+    P+ ++L+   E ++Y+I+QEL     N      +V+ ++ VQ   R+  
Sbjct  295  SEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGN---RIEFVPVIADVQNKTRILE  351

Query  355  LMQAHQVETVYHAAAYKHVPLVEDNVIEGIRNNVFGTLACANAAIEAGVKNFTLISTDKA  414
            +M+  +  +VYHAAA KHVPL+E N  E+IRNN++GT   A++A E+ V +F +ISTDKA
Sbjct  352  VMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKA  411

Query  415  VRPTNIMGASKRMAELVLQALADKNSTTIFTMVRFGNVLGSSGSVVPLFKKQIRAGGPVT  474
            V P+N+MGA+KR+AE+V+Q+L + NS T F  VRFGNVLGS GSV+PLFK+QI +GGPVT
Sbjct  412  VNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVT  471

Query  475  VTHPDIIRYFMLIPEAAQLVIQAGAMSHNGQVFVLDMGEPVKIVDLAKRMIHLMGMKEFC  534
            VTHP++ RYFM IPEA++LV+QAGA+++ G+VFVLDMG PVKIVDLAK +I+L G K   
Sbjct  472  VTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKK---  528

Query  535  DGRSDEGDIEIKFTGLRPGEKLYEELLIGENVE  567
                 E DI I F+G+RPGEKLYEELL  ++++
Sbjct  529  -----EEDIGIEFSGIRPGEKLYEELLNKNEIH  556

417) VC0260 in NC_002505


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  294 bits (1100),  Expect = 1e-80, Method: Compositional matrix adjust.
 Identities = 199/453 (44%), Positives = 312/453 (69%), Gaps = 21/453 (4%)

Query  123  LTLGGPRIFIRTIYYHYYKR---QKPNVFIYGAGSTGRDLAYALIQGDEY--HPVIFLDD  177
            L +GG+R+F + +Y +Y+     +K   ++ GAG  G  L   ++++++   +PV+ +DD
Sbjct  117  LLIGGSRLF-WRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDD  175

Query  178  DPAKTGQIIFGLRVHHSSDFESLRNLYEPVKMLIAINNIGK--NTRIKLLERLSHW-PIE  234
            D  K  ++ +  RV   +  E + +L    ++   I  I    + R++ ++++ +   +E
Sbjct  176  DKNKQ-KMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVE  234

Query  235  IQSVPSVEDIAAGRAKATDVQDLDIADLLGRAPVEPDLALLQKNITEKSVMVTGAGGSIG  294
            +  +P++ED+ +G     +++ +++ DLLGR PVE D+AL+ +++T+K+++VTGAGGSIG
Sbjct  235  LFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIG  294

Query  295  SELCRQILAQKPKTLVLFELNEYNLYTIDQELQAIKQNLKLNTKIVAALGSVQRENRVKK  354
            SE+CRQ+    P+ ++L+   E ++Y+I+QEL     N      +V+ ++ VQ   R+  
Sbjct  295  SEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGN---RIEFVPVIADVQNKTRILE  351

Query  355  LMQAHQVETVYHAAAYKHVPLVEDNVIEGIRNNVFGTLACANAAIEAGVKNFTLISTDKA  414
            +M+  +  +VYHAAA KHVPL+E N  E+IRNN++GT   A++A E+ V +F +ISTDKA
Sbjct  352  VMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKA  411

Query  415  VRPTNIMGASKRMAELVLQALADKNSTTIFTMVRFGNVLGSSGSVVPLFKKQIRAGGPVT  474
            V P+N+MGA+KR+AE+V+Q+L + NS T F  VRFGNVLGS GSV+PLFK+QI +GGPVT
Sbjct  412  VNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVT  471

Query  475  VTHPDIIRYFMLIPEAAQLVIQAGAMSHNGQVFVLDMGEPVKIVDLAKRMIHLMGMKEFC  534
            VTHP++ RYFM IPEA++LV+QAGA+++ G+VFVLDMG PVKIVDLAK +I+L G K   
Sbjct  472  VTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKK---  528

Query  535  DGRSDEGDIEIKFTGLRPGEKLYEELLIGENVE  567
                 E DI I F+G+RPGEKLYEELL  ++++
Sbjct  529  -----EEDIGIEFSGIRPGEKLYEELLNKNEIH  556

418) rfbU in NC_012582


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  294 bits (1100),  Expect = 1e-80, Method: Compositional matrix adjust.
 Identities = 199/453 (44%), Positives = 312/453 (69%), Gaps = 21/453 (4%)

Query  123  LTLGGPRIFIRTIYYHYYKR---QKPNVFIYGAGSTGRDLAYALIQGDEY--HPVIFLDD  177
            L +GG+R+F + +Y +Y+     +K   ++ GAG  G  L   ++++++   +PV+ +DD
Sbjct  117  LLIGGSRLF-WRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDD  175

Query  178  DPAKTGQIIFGLRVHHSSDFESLRNLYEPVKMLIAINNIGK--NTRIKLLERLSHW-PIE  234
            D  K  ++ +  RV   +  E + +L    ++   I  I    + R++ ++++ +   +E
Sbjct  176  DKNKQ-KMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVE  234

Query  235  IQSVPSVEDIAAGRAKATDVQDLDIADLLGRAPVEPDLALLQKNITEKSVMVTGAGGSIG  294
            +  +P++ED+ +G     +++ +++ DLLGR PVE D+AL+ +++T+K+++VTGAGGSIG
Sbjct  235  LFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIG  294

Query  295  SELCRQILAQKPKTLVLFELNEYNLYTIDQELQAIKQNLKLNTKIVAALGSVQRENRVKK  354
            SE+CRQ+    P+ ++L+   E ++Y+I+QEL     N      +V+ ++ VQ   R+  
Sbjct  295  SEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGN---RIEFVPVIADVQNKTRILE  351

Query  355  LMQAHQVETVYHAAAYKHVPLVEDNVIEGIRNNVFGTLACANAAIEAGVKNFTLISTDKA  414
            +M+  +  +VYHAAA KHVPL+E N  E+IRNN++GT   A++A E+ V +F +ISTDKA
Sbjct  352  VMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKA  411

Query  415  VRPTNIMGASKRMAELVLQALADKNSTTIFTMVRFGNVLGSSGSVVPLFKKQIRAGGPVT  474
            V P+N+MGA+KR+AE+V+Q+L + NS T F  VRFGNVLGS GSV+PLFK+QI +GGPVT
Sbjct  412  VNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVT  471

Query  475  VTHPDIIRYFMLIPEAAQLVIQAGAMSHNGQVFVLDMGEPVKIVDLAKRMIHLMGMKEFC  534
            VTHP++ RYFM IPEA++LV+QAGA+++ G+VFVLDMG PVKIVDLAK +I+L G K   
Sbjct  472  VTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKK---  528

Query  535  DGRSDEGDIEIKFTGLRPGEKLYEELLIGENVE  567
                 E DI I F+G+RPGEKLYEELL  ++++
Sbjct  529  -----EEDIGIEFSGIRPGEKLYEELLNKNEIH  556

419) rfbU in NC_009457


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  294 bits (1100),  Expect = 1e-80, Method: Compositional matrix adjust.
 Identities = 199/453 (44%), Positives = 312/453 (69%), Gaps = 21/453 (4%)

Query  123  LTLGGPRIFIRTIYYHYYKR---QKPNVFIYGAGSTGRDLAYALIQGDEY--HPVIFLDD  177
            L +GG+R+F + +Y +Y+     +K   ++ GAG  G  L   ++++++   +PV+ +DD
Sbjct  117  LLIGGSRLF-WRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDD  175

Query  178  DPAKTGQIIFGLRVHHSSDFESLRNLYEPVKMLIAINNIGK--NTRIKLLERLSHW-PIE  234
            D  K  ++ +  RV   +  E + +L    ++   I  I    + R++ ++++ +   +E
Sbjct  176  DKNKQ-KMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVE  234

Query  235  IQSVPSVEDIAAGRAKATDVQDLDIADLLGRAPVEPDLALLQKNITEKSVMVTGAGGSIG  294
            +  +P++ED+ +G     +++ +++ DLLGR PVE D+AL+ +++T+K+++VTGAGGSIG
Sbjct  235  LFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIG  294

Query  295  SELCRQILAQKPKTLVLFELNEYNLYTIDQELQAIKQNLKLNTKIVAALGSVQRENRVKK  354
            SE+CRQ+    P+ ++L+   E ++Y+I+QEL     N      +V+ ++ VQ   R+  
Sbjct  295  SEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGN---RIEFVPVIADVQNKTRILE  351

Query  355  LMQAHQVETVYHAAAYKHVPLVEDNVIEGIRNNVFGTLACANAAIEAGVKNFTLISTDKA  414
            +M+  +  +VYHAAA KHVPL+E N  E+IRNN++GT   A++A E+ V +F +ISTDKA
Sbjct  352  VMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKA  411

Query  415  VRPTNIMGASKRMAELVLQALADKNSTTIFTMVRFGNVLGSSGSVVPLFKKQIRAGGPVT  474
            V P+N+MGA+KR+AE+V+Q+L + NS T F  VRFGNVLGS GSV+PLFK+QI +GGPVT
Sbjct  412  VNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVT  471

Query  475  VTHPDIIRYFMLIPEAAQLVIQAGAMSHNGQVFVLDMGEPVKIVDLAKRMIHLMGMKEFC  534
            VTHP++ RYFM IPEA++LV+QAGA+++ G+VFVLDMG PVKIVDLAK +I+L G K   
Sbjct  472  VTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKK---  528

Query  535  DGRSDEGDIEIKFTGLRPGEKLYEELLIGENVE  567
                 E DI I F+G+RPGEKLYEELL  ++++
Sbjct  529  -----EEDIGIEFSGIRPGEKLYEELLNKNEIH  556

420) BN4_12169 in NC_020409


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  294 bits (1101),  Expect = 1e-80, Method: Compositional matrix adjust.
 Identities = 212/514 (42%), Positives = 338/514 (66%), Gaps = 19/514 (3%)

Query  68   FGLYRGMWRYTSLDDYWKMLRVTTLQNLLLISFVVLRFSFAGVPRSIFVIDWILTLVLCS  127
            F LY+  W Y+S+ +   +L+  T   ++ + +V L +S +   R ++ I W++ L+L +
Sbjct  62   FNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLR-LYFITWMMHLLLIG  120

Query  128  GVRL---SIRAFYAQAESMTAPSAERKTILVVGTGSLAEKIGRELV-GNPAQYTLVGFLD  183
            G RL     R ++ +       + E+K+ LVVG+G  +  + RE++ ++  +   V  +D
Sbjct  121  GSRLFWRVYRRYFIDN------AVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVD  174

Query  184  EDPGKRGRTIHGK-PVLGNIALMKTLVERDEVDEIFIAVSRASGEEMRLIAEACKTTGVP  242
            +D  K+  TI  +  V G +  +  LV +  +  I+IA++  S   +  I   C+  GV 
Sbjct  175  DDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVE  234

Query  243  FKILPAMTEIMDGKVGIKALRDVDYLDLLGRSPVTLDTDRILAYLSGQTVLVTGCGGSIG  302
            +  +P + +++ G + ++ L+ V+  DLLGR PV LD   I   L+ +T+LVTG GGSIG
Sbjct  235  LFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIG  294

Query  303  SELCRQIVRFKPSHIVLVDSSEYNLYQMQMELHHGLGF-TGYTTVLGSITDTDLMTRTFA  361
            SE+CRQ+ +F P  I+L++ +E ++Y ++ EL    G    +  V++ + +   +     
Sbjct  295  SEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMN  354

Query  362  AHTPSTVFHAAAYKHVPMLERNPWQAVRNNILGSQTIMHAAVESGVERFVVVSTDKAVRP  421
               P +V+HAAA KHVP++E NP +A+RNNILG++ + ++A E+ V +FV++STDKAV P
Sbjct  355  EFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNP  414

Query  422  TNVMGASKRVTELLMQSLHGRGTR--FMAVRFgnvvgssgsvvPLFRRQIETGGPVTVTH  479
            +NVMGA+KR++E+++QSL+   ++  F+AVRFGNV+GS GSV+PLF+ QIE+GGPVTVTH
Sbjct  415  SNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTH  474

Query  480  PDVTRYFMSISEASQLILQAGSMGETGTGGEIFVLDMGVPVKIADMARDLIRLSGKKPDV  539
            P++TRYFM+I+EAS+L+LQAG++++   GGE+FVLDMG PVKI D+A++LIRLSGKK + 
Sbjct  475  PEMTRYFMTIPEASRLVLQAGALAQ---GGEVFVLDMGKPVKIVDLAKNLIRLSGKKEE-  530

Query  540  DIQIIFTGLREGEKLFEELITEGEGIVRTEHEKI  573
            DI I F+G+R GEKL+EEL+   E   +   EKI
Sbjct  531  DIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKI  564

421) XALc_1597 in NC_013722


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  294 bits (1100),  Expect = 1e-80, Method: Compositional matrix adjust.
 Identities = 219/539 (41%), Positives = 355/539 (66%), Gaps = 15/539 (2%)

Query  68   GLYRGLWRFASVPDLLNIFKASFYGLIAIVLGLAYSRFDAIPLSVLMVYPFA-LSALL--  124
             LY+  W +ASV++L++++KA   +++  +L ++    ++   + L +Y ++ +  LL  
Sbjct  63   NLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISES---PFLRLYFITWMMHLLLI  119

Query  125  GAPRLLYRAWKDYQIAHSDDTARRVLIVGAGRAAEALVRDLRRSGAY--YPVGFVDDAGH  182
            G++RL+ R  + Y I ++ +  +  L+VGAG+++  L+R++ RS      PV  VDD  +
Sbjct  120  GGSRLFWRVYRRYFIDNAVEK-KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKN  178

Query  183  LHGAKLQG-LPILGRIDEAGEIAKETAAKLLVIAIPSLDAVGMQRVVALCESTGLPFRTV  241
             +   +   + + G +++  E+ K    K ++IAIP+L    ++ +  +C+  G+ +  +
Sbjct  179  KQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKM  238

Query  242  PRLVDVLEGHYLPGELKEVAIEDLLGRKPVKPDWKLIKGWLSGRTVLVTGAGGSIGSELC  301
            P + DVL G+    +LK V +EDLLGR PV  D  LI   L+ +T+LVTGAGGSIGSE+C
Sbjct  239  PNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEIC  298

Query  302  RQCARHGARKVLLLEIDELALITIHADLRRTFPD-LEIDCVLGDCGDPAVIRHAMRVAEP  360
            RQ ++ +++K++LL  +E ++ +IH +L +T+ + +E+  V++D  + + I + M    P
Sbjct  299  RQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKP  358

Query  361  DAVFHAAAYKQVPLLEGQFREAVRNNVLATENVARACVAANVSTFVFISTDKAVNPVNVL  420
             AV+HAAA K+VPL+E + +EA+RNN+L+T NVA +   ++VS FV ISTDKAVNP NV+
Sbjct  359  YAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVM  418

Query  421  GASKRYAEMVCQSLDDQAVGTRFVTVRFGNVLDSAGSVVPLFREQIRQGGPVTVTDPQVT  480
            GA+KR AEMV QSL+++   T FV+VRFGNVL+S GSV+PLF++QI  GGPVTVT+P++T
Sbjct  419  GATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMT  478

Query  481  RYFMTIPEACQLIVQAAASASRGAIYTLDMGEPVPIRLLAEQMIRLAGKQPGRDIAILYT  540
            RYFMTIPEA +L++QA+A A  G ++ LDMG PV I  LA ++IRL+GK+   DI+I ++
Sbjct  479  RYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEE-DIGIEFS  537

Query  541  GLRPGEKLHETLFYSDEDYRPTSHPKILEAGVRSFSREDVLRGVQQLRAAVADYDSETI  599
            G+RPGEKL E L+  +E        KI  + V  + + +V   V++L   + ++  E +
Sbjct  538  GIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDL---INNFSKEKL  593

422) FSU_0179 in NC_017448


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  294 bits (1102),  Expect = 6e-81, Method: Compositional matrix adjust.
 Identities = 215/460 (47%), Positives = 314/460 (69%), Gaps = 27/460 (5%)

Query  8    GVCLFRYMFRNAFISIINTGHREAMKKRTMIIGAGNATKLLLDEIRNSAKDAEKGVATSN  67
            G  LF+ ++R  FI           KK T+++GAG++  +L+           + +  S+
Sbjct  121  GSRLFWRVYRRYFID------NAVEKKATLVVGAGQGGSVLI-----------REMLRSQ  163

Query  68   ASKINPVCLIDDDRYKIGKPF-EGVLVAGTTSDIPKIAKQENIEQILFSIPSCPPKDRQV  126
              +++PV  +DDD+ K    + E V V G   DIP + K+  I +I+++IP+ + K  + 
Sbjct  164  DMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNE  223

Query  127  IMDLCGKTGLPVKVLPFVGTLLDTSNVGTGETNFATQIRDIKVEDLLGRDPIKFDNKDIR  186
            I  +C   G+ +  +P +  +L      +GE +   +++ + VEDLLGRDP+ +D   I 
Sbjct  224  INKICNIEGVELFKMPNIEDVL------SGELE-VNNLKKVEVEDLLGRDPVELDMALIS  276

Query  187  AYIENKVCMVTGGGGSIGSELVRQIAKYNPKQIIIVDIYENNAYDIQQELVMEYGKSLNL  246
              + NK  +VTG+GGSIGSE+ RQ++K++P++II+++  EN+ Y I+QEL   YG+ +++
Sbjct  277  RELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEF  336

Query  247  VTLIASVRDYFRMNQIFKTYQPEVIFHAAAHKHVPLMENNPMEAIKNNVIGTFNVATLAM  306
            V +IA V++  R+ ++ + ++P  ++HAAAHKHVPLME NP EAI+NN++GT NVA  A 
Sbjct  337  VPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAK  396

Query  307  FNNVKKFVMISTDKAVNPTNVMGASKRCCEMIVRFMSMQKESNTEFVVTRFGNVLGSNGS  366
              +V KFVMISTDKAVNP+NVMGA+KR  EM+++ ++ + +S+T FV  RFGNVLGS GS
Sbjct  397  EGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLN-EDNSKTSFVAVRFGNVLGSRGS  455

Query  367  VIPLFKRQIEQGKPVTVTHPEIIRYFMTIPEAVSLVLEAASIAQGGEIFVLDMGMPVKIV  426
            VIPLFK QIE G PVTVTHPE+ RYFMTIPEA  LVL+A+++AQGGE+FVLDMG PVKIV
Sbjct  456  VIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIV  515

Query  427  TLAENLIRMYGKVPYKDVPIKFTGLRPGEKIKEELLMNEE  466
             LA NLIR+ GK    D+ I F+G+RPGEK+ EELL ++E
Sbjct  516  DLAKNLIRLSGKKE-EDIGIEFSGIRPGEKLYEELLNKNE  554

423) lpsB2 in NC_010997


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  294 bits (1102),  Expect = 7e-81, Method: Compositional matrix adjust.
 Identities = 199/476 (42%), Positives = 324/476 (69%), Gaps = 29/476 (6%)

Query  124  LIAIGLSRLGIRYWLGDTYQRILHQNTLAK--VLIYGAGNAGRQLAGALTNSAELNVVGY  181
            L+ IG SRL   +W    Y+R + +N++ K   L+ GAG++G  L   +  S ++ +   
Sbjct  116  LLLIGGSRL---FW--RVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPV  170

Query  182  L---DDDPRLKGGIMGGLPI--YDPSDLPVLAEALGVHNVLLALPSASRQRRNEILERIR  236
            L   DD  + K  I   + +  Y   D+P L   + + ++++A+P+ S++R NEI     
Sbjct  171  LAVDDDKNKQKMTITERVKVQGY-VEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICN  229

Query  237  KARVNVRTLPDLTALAQGRVAVSDIRELEIEDLLGREAVAPRQELLDKAMRKKVVMVTGA  296
               V++  +P++  +  G + V++++ +E+EDLLGR++V     L+ + + +K ++VTGA
Sbjct  230  IEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGA  289

Query  297  GGSIGGELCRQILRNAPSSLILIDQNEFALYNIHAELLKLAELYKQESLQIVPILCSVRD  356
            GGSIG+E+CRQ+ +  P  +IL+++ E ++Y+IH EL   +  Y  + +++VP++  V++
Sbjct  290  GGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQEL---SKTY-GNRIEFVPVIADVQN  345

Query  357  QDRMEHIMQSWRPQTLYHAAAYKHVPLVEHNAVEGIKNNVMGTLITARAANKCGVLNFVL  416
            + R+ ++M+  +P ++YHAAA KHVPL+E N+ E+I+NN++GT   A +A+   V +FV+
Sbjct  346  KTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVM  405

Query  417  ISTDKAVRPTNVMGASKRLAEMVLQALAAEPAVDRVRTNFSMVRFGNVLGSSGSVVPLFR  476
            ISTDKAV P+NVMGA+KR+AEMV+Q+L  + +    +T+F  VRFGNVLGS GSV+PLF+
Sbjct  406  ISTDKAVNPSNVMGATKRIAEMVIQSLNEDNS----KTSFVAVRFGNVLGSRGSVIPLFK  461

Query  477  QQIKDGGPVTLTHPKITRYFMTISEASQLVIQAGAMAEGGDVFLLDMGEPVRIADLARKM  536
            +QI  GGPVT+THP +TRYFMTI+EAS+LV+QAGA+A+GG+VF+LDMG PV+I DLA+++
Sbjct  462  NQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNL  521

Query  537  VELSGLAVRDEDNPEGDIELSVTGLRPGEKLYEELLIGDNPETTE-HPRIMKARED  591
            + LSG       + E DI +  +G+RPGEKLYEELL  ++ +  +   +I +++ D
Sbjct  522  IRLSG-------KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVD  570

424) SYN_02670 in NC_007759


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  294 bits (1103),  Expect = 7e-81, Method: Compositional matrix adjust.
 Identities = 220/548 (41%), Positives = 351/548 (65%), Gaps = 35/548 (6%)

Query  69   YRMTWRYVGVSDLTNIMAAVMISDLVLMVASFPIPIPEFWHIQFPLEGYVKRIFIVDGVF  128
            Y+ +W Y +VS+L +++ AV  S +V ++    +              ++ R++++  + 
Sbjct  65   YHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISES---------PFL-RLYFITWMM  114

Query  129  SLFFIGGMRVAKRVY----LEVIRGKKSVRTGKRTLILGAGNTGEMILRDMAKQRFSAFY  184
             L++IGG R+  RVY    ++    KK+      TL++GAG+ G +++R+M + +     
Sbjct  115  HLLLIGGSRLFWRVYRRYFIDNAVEKKA------TLVVGAGQGGSVLIREMLRSQDMRMQ  168

Query  185  PVGLLDNDTRKIGVYIHG-VKVLGRLGELRTLISRNDIEAVIIAIPSLNHKKLRVLYDSA  243
            PV  +D+D  K  + I   VKV G + ++  L+ +  I  +IIAIP+L++K+L  +    
Sbjct  169  PVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKIC  228

Query  244  RRAGVKTIKFVPRIYNFERPEINLRALEDIAIEDLIGRQAITVDYEGIRDFLTGRSIMVT  303
               GV  +K +P I +    E+++  L  + +EDL+GR+++ +D   I   LT ++I+VT
Sbjct  229  NIEGVELFK-MPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVT  287

Query  304  GAGGSIGSEIVTQVCSFSPSCLVLFDIDETELHNLGLKLQRLFPELSDRIQYVT--GDVR  361
            GAGGSIGSEI  QV  F P  ++L++ +E  + ++   L + +   ++RI++V   +DV+
Sbjct  288  GAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTY---GNRIEFVPVIADVQ  344

Query  362  DRGRLDEVFRAYAPRIVFHAAAYKHVPMMESNPKEAVKVNIFGTHALAEAAKNYGVEKFI  421
            ++ R+ EV   + P  V+HAAA KHVP+ME NP EA++ NI+GT  +AE+AK+  V KF+
Sbjct  345  NKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFV  404

Query  422  MISTDKAVRPTSVMGATKRMAEHICRAFQEAGSGKEGGESTRYVSVRFGNVLGSRGSVLP  481
            MISTDKAV P++VMGATKR+AE + ++++E  S       T +V+VRFGNVLGSRGSV+P
Sbjct  405  MISTDKAVNPSNVMGATKRIAEMVIQSLNEDNS------KTSFVAVRFGNVLGSRGSVIP  458

Query  482  LFLDQLKHGGPLTITHRDMLRYFMTIPEAVSLVLQASTMGGGGEVFVLDMGEPVKILEVA  541
            LF +Q+  GGP+T+TH +M RYFMTIPEA  LVLQA++++ GGEVFVLDMG PVKI+++A
Sbjct  459  LFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLA  518

Query  542  EELVRLQGLEPYKDIEFEFTGLRPGEKLFEEILTAEEGTVASRHEKIFVARNSEKYSLDD  601
             +L+RL G     DI +EF+G+RPGEKL+EE+L  +E       EKI+ ++  + Y   +
Sbjct  519  KNLIRLSGKKE-EDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGK-VDHYIKTE  576

Query  602  LTPILADF  609
            +  I+ D+
Sbjct  577  VDLIVEDL  584

425) Kole_1759 in NC_012785


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  294 bits (1102),  Expect = 8e-81, Method: Compositional matrix adjust.
 Identities = 218/469 (47%), Positives = 316/469 (68%), Gaps = 21/469 (4%)

Query  123  FLIIW---------SRIFWLTY--LFLKIERSGKSLDRILIVGAGDAGTTLVDEITRHPE  171
            ++I W         SR+FW  Y   F+      K+    L+VGAG++G+ L+ E+ R  +
Sbjct  108  YFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEKKA---TLVVGAGQGGSVLIREMLRSQD  164

Query  172  Y--GRVVGFVDDSPRKQKKRIRG-IPVLGTTEEIMQIVDKYQINRVIIAIPSATSDQMRR  228
                 V++ VDD   KQK  I   + V G  E+I ++V K++I+++IIAIP+ +  ++  
Sbjct  165  MRMQPVLA-VDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNE  223

Query  229  IMYRIDRNKVRVQTLPGLTEIIDRKARLGYLRDINIEDLLGREPVEIDKKSLRGYITGKR  288
            I    + + V +  +P + +++     +  L+ +++EDLLGR+PVE+D   +   +T K 
Sbjct  224  INKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKT  283

Query  289  VLVTGAGGSIGSELCRQIAYLEPKALIILGKGENSIHNIEEELKEKYPD-LKVHRVIGDV  347
            +LVTGAGGSIGSE+CRQ++ ++P+ +I+LG GENSI +I++EL   Y + +    VI+DV
Sbjct  284  ILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADV  343

Query  348  QDKDRMEFIIATFKPEIIFHAAAHKHVPIMEENPTEAFRVNTLGTYILASIAEKYGCERF  407
            Q+K R+  ++  FKP  ++HAAAHKHVP+ME NP EA+R N LGT  +A  A      +F
Sbjct  344  QNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKF  403

Query  408  VMISTDKAVRPSSIMGVSKRLAEQILKSIAR-YSKMRIGIVRFGNVLGSRGSVVPKFKKQ  466
            VMISTDKAV PS++MG +KR+AE +++S+    SK  +  VRFGNVLGSRGSV+P FK+Q
Sbjct  404  VMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQ  463

Query  467  IENGGPVTVTDPRMTRYFMTIPEAVSLVMQAGAYAKNGDVFVLDMGKPVKISDLARDMIT  526
            IE+GGPVTVT+P MTRYFMTIPEA  LV+QAGA A+ G+VFVLDMGKPVKI DLA+++I 
Sbjct  464  IESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIR  523

Query  527  LAGYVPDQEIKIEYIGARPGEKLFEELSLDSEKFDKTPHPKIFRLKDDR  575
            L+G   +++I IE+ G RPGEKL+EEL   +E   +    KI+R K D+
Sbjct  524  LSG-KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDH  571

426) SYN_02689 in NC_007759


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  294 bits (1102),  Expect = 8e-81, Method: Compositional matrix adjust.
 Identities = 217/491 (45%), Positives = 334/491 (69%), Gaps = 18/491 (3%)

Query  126  RIIFVDGLISLILIVGLRVSKRLYLEILSRK---GRTPEGKTTLIVGAGSCGEMILRDMM  182
            R+ F+  ++ L+LI G R+  R+Y     R+   + + E K+TL+VGAG  G +++R+M+
Sbjct  106  RLYFITWMMHLLLIGGSRLFWRVY-----RRYFIDNAVEKKATLVVGAGQGGSVLIREML  160

Query  183  RQRFADFRPVGFLDDSPDLQGRYIHG-VRVLGGTDRLTELIARHSVEAVIIAITSVNHKK  241
            R +    +PV  +DD  + Q   I   V+V G  + + EL+ +  +  +IIAI ++++K+
Sbjct  161  RSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKR  220

Query  242  LLNLYETARKAGVKTIKVVPRFYSFDQPEINLKALEDIRIEDLLGRQAVTVDFGEIGRFL  301
            L ++       GV  +K+ P +      E++++ L  + +EDLLGR++V +D + I+R L
Sbjct  221  LNEINKICNIEGVELFKM-PNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISREL  279

Query  302  RGRAVLVTGAGGSIGSEIVRQVCSFHPEKIILFDIDETELHNLGLTLNRLFPSLQKAISF  361
              +++LVTGAGGSIGSEI RQV  F+P+KIIL++ +E  + ++   L++ + +    I F
Sbjct  280  TNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGN---RIEF  336

Query  362  VT--GDVRDALRLREVFAELRPEVVFHAAAYKHVPMMEYNPKEAVKVNIFGTWNLVRAAV  419
            V   +DV++  R+ EV  E++P  V+HAAA KHVP+MEYNP EA++ NI+GT N+  +A 
Sbjct  337  VPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAK  396

Query  420  EHGVKKFVMISTDKAVRPTSVMGATKRMAEYLCRACDGMGDGPARFVSVRFGNVLGSRGS  479
            E  V KFVMISTDKAV P++VMGATKR+AE + ++ +  +++ + FV+VRFGNVLGSRGS
Sbjct  397  EGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNE-DNSKTSFVAVRFGNVLGSRGS  455

Query  480  VLPLFLEQLKHGQPLTVTHREMKRYFMTIPEAVTLVLQAAVIGNGGEVLVLDMGEPVKIS  539
            V+PLF +Q+  G P+TVTH EM RYFMTIPEA  LVLQA+ +++GGEV+VLDMG PVKI 
Sbjct  456  VIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIV  515

Query  540  DLAEELIRINGLEPYRDVDIEVTGLRPGEKLFEEILTAEEGTDASRHEKIFVARNGDKYS  599
            DLA +LIR++G     D++IE +G+RPGEKL+EE+L  +E       EKI+ ++  D Y 
Sbjct  516  DLAKNLIRLSGKKE-EDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGK-VDHYI  573

Query  600  LSEIEQILAEF  610
             +E++ I+ ++
Sbjct  574  KTEVDLIVEDL  584

427) REMIM1_PA00003 in NC_021906


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  294 bits (1101),  Expect = 9e-81, Method: Compositional matrix adjust.
 Identities = 201/476 (43%), Positives = 325/476 (69%), Gaps = 29/476 (6%)

Query  112  LIAIGLSRLGIRYWLGDTYQRILHQNTLAK--VLIYGAGNAGRQLAGALTNSAELNVVGY  169
            L+ IG SRL   +W    Y+R + +N++ K   L+ GAG++G  L   +  S ++ +   
Sbjct  116  LLLIGGSRL---FW--RVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPV  170

Query  170  L---DDDPRLKGGIMGGLPI--YDPSDLPVLAETLGVHNVLLALPSASRQRRNEILEHIR  224
            L   DD  + K  I   + +  Y   D+P L   + + ++++A+P+ S++R NEI     
Sbjct  171  LAVDDDKNKQKMTITERVKVQGY-VEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICN  229

Query  225  KARVNVRTLPDLTALAQGRVAVSDIRELEIEDLLGREAVAPRQELLDKAMRNKVVMVTGA  284
               V++  +P++  +  G + V++++ +E+EDLLGR++V     L+ + + NK ++VTGA
Sbjct  230  IEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGA  289

Query  285  GGSIGGELCRQILRNAPSSLILIDQNEFALYNIHAELLKLAEVYKHEGLQIVPILCSVRD  344
            GGSIG+E+CRQ+ +  P  +IL+++ E ++Y+IH EL   +  Y +  +++VP++  V++
Sbjct  290  GGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQEL---SKTYGNR-IEFVPVIADVQN  345

Query  345  QDRMEHIMESWRPQTLYHAAAYKHVPLVEHNAVEGIKNNVMGTLITARAANKYGVSNFVL  404
            + R+ ++M+  +P ++YHAAA KHVPL+E N+ E+I+NN++GT   A +A+   VS+FV+
Sbjct  346  KTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVM  405

Query  405  ISTDKAVRPTNVMGASKRLAEMVLQALAAELTADRLRTNFSMVRFGNVLGSSGSVVPLFR  464
            ISTDKAV P+NVMGA+KR+AEMV+Q+L  + +    +T+F  VRFGNVLGS GSV+PLF+
Sbjct  406  ISTDKAVNPSNVMGATKRIAEMVIQSLNEDNS----KTSFVAVRFGNVLGSRGSVIPLFK  461

Query  465  QQIKEGGPVTLTHPKITRYFMTISEASQLVIQAGAMAEGGDVFLLDMGEPVRIADLARKM  524
            +QI  GGPVT+THP +TRYFMTI+EAS+LV+QAGA+A+GG+VF+LDMG PV+I DLA+++
Sbjct  462  NQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNL  521

Query  525  VELSGLTVRDLDNPEGDIELAVTGLRPGEKLYEELLIGDNPETTE-HPRIMKARED  579
            + LSG       + E DI +  +G+RPGEKLYEELL  ++ +  +   +I +++ D
Sbjct  522  IRLSG-------KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVD  570

428) lpsB2 in NC_007763


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  294 bits (1101),  Expect = 9e-81, Method: Compositional matrix adjust.
 Identities = 201/476 (43%), Positives = 325/476 (69%), Gaps = 29/476 (6%)

Query  112  LIAIGLSRLGIRYWLGDTYQRILHQNTLAK--VLIYGAGNAGRQLAGALTNSAELNVVGY  169
            L+ IG SRL   +W    Y+R + +N++ K   L+ GAG++G  L   +  S ++ +   
Sbjct  116  LLLIGGSRL---FW--RVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPV  170

Query  170  L---DDDPRLKGGIMGGLPI--YDPSDLPVLAETLGVHNVLLALPSASRQRRNEILEHIR  224
            L   DD  + K  I   + +  Y   D+P L   + + ++++A+P+ S++R NEI     
Sbjct  171  LAVDDDKNKQKMTITERVKVQGY-VEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICN  229

Query  225  KARVNVRTLPDLTALAQGRVAVSDIRELEIEDLLGREAVAPRQELLDKAMRNKVVMVTGA  284
               V++  +P++  +  G + V++++ +E+EDLLGR++V     L+ + + NK ++VTGA
Sbjct  230  IEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGA  289

Query  285  GGSIGGELCRQILRNAPSSLILIDQNEFALYNIHAELLKLAEVYKHEGLQIVPILCSVRD  344
            GGSIG+E+CRQ+ +  P  +IL+++ E ++Y+IH EL   +  Y +  +++VP++  V++
Sbjct  290  GGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQEL---SKTYGNR-IEFVPVIADVQN  345

Query  345  QDRMEHIMESWRPQTLYHAAAYKHVPLVEHNAVEGIKNNVMGTLITARAANKYGVSNFVL  404
            + R+ ++M+  +P ++YHAAA KHVPL+E N+ E+I+NN++GT   A +A+   VS+FV+
Sbjct  346  KTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVM  405

Query  405  ISTDKAVRPTNVMGASKRLAEMVLQALAAELTADRLRTNFSMVRFGNVLGSSGSVVPLFR  464
            ISTDKAV P+NVMGA+KR+AEMV+Q+L  + +    +T+F  VRFGNVLGS GSV+PLF+
Sbjct  406  ISTDKAVNPSNVMGATKRIAEMVIQSLNEDNS----KTSFVAVRFGNVLGSRGSVIPLFK  461

Query  465  QQIKEGGPVTLTHPKITRYFMTISEASQLVIQAGAMAEGGDVFLLDMGEPVRIADLARKM  524
            +QI  GGPVT+THP +TRYFMTI+EAS+LV+QAGA+A+GG+VF+LDMG PV+I DLA+++
Sbjct  462  NQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNL  521

Query  525  VELSGLTVRDVDNPEGDIELAVTGLRPGEKLYEELLIGDNPETTE-HPRIMKARED  579
            + LSG       + E DI +  +G+RPGEKLYEELL  ++ +  +   +I +++ D
Sbjct  522  IRLSG-------KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVD  570

429) Ethha_0666 in NC_014828


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  293 bits (1098),  Expect = 2e-80, Method: Compositional matrix adjust.
 Identities = 198/445 (45%), Positives = 314/445 (71%), Gaps = 5/445 (1%)

Query  154  GAGEAGTNLLHKLANNPEEHRLPVCFIDDNQGMWgkkvgglpvvgg-RDRLGEAIRTYNA  212
            GAG++G+ L++ +  + + +  PV  +DD++      +     V G  + + E ++ +  
Sbjct  147  GAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRI  206

Query  213  GEVILAISSAGHDMLKELLIICHGMHCPLRRFGTIDEVNESSFSNAKISDLNLEDLLKRD  272
              +I+AI++ ++  L+E+  IC+     L +   I++V  + +   ++  +++EDLL RD
Sbjct  207  KKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRD  266

Query  273  SVQLNMRAVQDFVAGKTVLVTGGAGSIGSEICRQVLAFGARRLLVFDIFENGLYEINNEL  332
            +V+L+M  +   ++ KT+LVTG++GSIGSEICRQV  F+++++++++  EN++Y I++EL
Sbjct  267  PVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQEL  326

Query  333  GALYPAE-RYRLLLGSIRDAARLEEVFARYRPEVVFHAAAHKHVPMMEYNPMEALKNNVF  391
            +  Y     +  +++ +++ +R+ EV   ++P  V+HAAAHKHVP+MEYNP EA++NN++
Sbjct  327  SKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNIL  386

Query  392  GTLNVAKAAIDAHAEKFILISTDKAVNPANIMGASKRIAELCVQLLNRE-SRTELAAVRF  450
            GT NVA +A +++  KF++ISTDKAVNP+N+MGA+KRIAE+ +Q LN + S+T + AVRF
Sbjct  387  GTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRF  446

Query  451  GNVLGSSGSVVPFFKKQIERGGPVTVTHPKMRRYFMTIPEAVQLVLEAGAMARGGEIFVL  510
            GNVLGS GSV+P+FK+QIE GGPVTVTHP M RYFMTIPEA +LVL+AGA+A+GGE+FVL
Sbjct  447  GNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVL  506

Query  511  DMGEPVLIYDLACDLIRLSGYEPDKDIRIEFTGLRPGEKLFEEISLAEEDVSKTPNDKIY  570
            DMG PV I DLA +LIRLSG   + DI IEF+G+RPGEKL+EE+   +E  ++   +KIY
Sbjct  507  DMGKPVKIVDLAKNLIRLSG-KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIY  565

Query  571  ICRPGGFDEQRIRELVE-LLRGYLK  594
              + + +    +  +VE L+  + K
Sbjct  566  RGKVDHYIKTEVDLIVEDLINNFSK  590

430) mma_2254 in NC_009659


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  293 bits (1097),  Expect = 2e-80, Method: Compositional matrix adjust.
 Identities = 206/466 (45%), Positives = 324/466 (70%), Gaps = 30/466 (6%)

Query  115  WVSAILYVVASRFL---ARGYLLRADDRGGSAVRVAIYGAGHSGMQLASALRAGHEY--L  169
            W+  +L + +SR++    R Y++       +++ V   GAG++G  L   +  +++    
Sbjct  112  WMMHLLLIGGSRLFWRVYRRYFIDNAVEKKATLVV---GAGQGGSVLIREMLRSQDMRMQ  168

Query  170  PVALIDDKKELHGATIAG-VKVWP-SSELPRLVAEKQIKEVLLAMPSLRKAQQKLI----  223
            PV  +DD K+ +  TI+  VKV     ++P LV   +IK +++A+P+L + + + I    
Sbjct  169  PVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKIC  228

Query  224  -LEQLEPLKVKIKVTPPIASLVNGELRVQDIRDIEIEDLLGRDAVEPDMRLLSTCITGRT  282
             +E +E +K+     P I  +++GEL V++++ +E+EDLLGRD+VE DM L+S  +T +T
Sbjct  229  NIEGVELFKM-----PNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKT  283

Query  283  VMVTGAGGSIGSELCRQIIRLAPKRLLLLDMSEFALYSIEQELQEVKRTQNVDVHVLPFL  342
            ++VTGAGGSIGSE+CRQ+ ++ P++++LL+ +E ++YSI+QEL    +T    ++ +P +
Sbjct  284  ILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQEL---SKTYGNRIEFVPVI  340

Query  343  GSVLESEKCERILRTYSVDTIYHAAAYKHVPLVEHNPIQGIRNNALGTLCLARAAVAAGV  402
            + V +  +   ++  +   ++YHAAA KHVPL+E NP ++IRNN LGT  +A +A  + V
Sbjct  341  ADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEV  400

Query  403  GCFVLISTDKAVRPTNVMGATKRLAELILQAFSRNQDGTRFCMVRFGNVLGSSGSVVPLF  462
            + FV+ISTDKAV P+NVMGATKR+AE+++Q+++ ++  T F  VRFGNVLGS GSV+PLF
Sbjct  401  SKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLF  460

Query  463  RKQIMSGGPITLTHPEITRYFMTIPEAAQLVLQAGAMGEGGDVFVLDMGEPVKILDLATR  522
            ++QI SGGP+T+THPE+TRYFMTIPEA++LVLQAGA+++GG+VFVLDMG PVKI+DLA  
Sbjct  461  KNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKN  520

Query  523  MVHLSGFEVQGDSDSSDTIEIQHVGLRPGEKLYEELLIGSNVEGTQ  568
            +++LSG          + I I+  G+RPGEKLYEELL  ++++  Q
Sbjct  521  LIRLSG-------KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQ  559

431) MARHY2533 in NC_017067


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  293 bits (1098),  Expect = 2e-80, Method: Compositional matrix adjust.
 Identities = 200/475 (43%), Positives = 323/475 (68%), Gaps = 25/475 (5%)

Query  124  LLVAGTRFTIRSVVRR---PREKAKNSVLIVGAGAKGMQLASALAQGVEYRPVGFVSLLK  180
            LL++G+R+ ++ V RR        K++ L+VGAG  G  L   + ++ + R    +++  
Sbjct  117  LLIGGSRL-FWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDD  175

Query  181  GNHRSVIGGLPVYSVEHLDKAVRELDASRALLALEDAIPVNRKQLLASLEKL----SIPV  236
            ++++  +       V+     + EL     +  +  AIP   ++ L  ++K+    ++ +
Sbjct  176  DKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVEL  235

Query  237  QTVPSMSELVAGQARINDIRDLEIEDLLGRDPVRPDTAIVSESLYGKSVMVTGAGGSIGS  296
              +P++ ++++G+  +N+++ +E+EDLLGRDPV  D A++S  L  K+++VTGAGGSIGS
Sbjct  236  FKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGS  295

Query  297  ELCRQIIRHKPRMLVLFEQSEFSLYSIERELRSISQIENLDVTIHAILGSVTHRRRCEAV  356
            E+CRQ+ +  P+ ++L+ ++E S+YSI++EL   S+     + + ++++ V ++ R   V
Sbjct  296  EICRQVSKFDPQKIILLGHGENSIYSIHQEL---SKTYGNRIEFVPVIADVQNKTRILEV  352

Query  357  LKAFGVQAVYHAAAYKHVPLVEHNVIEGIQNNVFGTWHTAEAAIAAGVERFVLISTDKAV  416
            ++ F   AVYHAAA KHVPL+E N  E+I+NN++GT + AE+A  + V +FV+ISTDKAV
Sbjct  353  MNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAV  412

Query  417  RPTNVMGATKRMAELVLQGLSQRQSQTVFSMVRFGNVLGSSGSVVPLFRDQIRDGGPVTV  476
             P+NVMGATKR+AE+V+Q+L++ +S+T F  VRFGNVLGS GSV+PLF++QI  GGPVTV
Sbjct  413  NPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTV  472

Query  477  THPDIIRYFMTIPEASQLVLQAGSMGQGGEVYVLDMGEPVRIADLARKMIHLMGLEEKTS  536
            THP++ RYFMTIPEAS+LVLQAG+++QGGEV+VLDMG PV+I DLA+++I+L G  E   
Sbjct  473  THPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKE---  529

Query  537  ESPGGDIEIVYTGLRPGEKLFEELLIGDNPQGTAHPRILMAREVSLTWDEVEEYL  591
                 DI I ++G+RPGEKL+EELL     +   HP+ +  +   + ++ V++Y+
Sbjct  530  ----EDIGIEFSGIRPGEKLYEELL----NKNEIHPQQVYEK---IYRGKVDHYI  573

432) PputGB1_1379 in NC_010322


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  293 bits (1098),  Expect = 2e-80, Method: Compositional matrix adjust.
 Identities = 210/490 (43%), Positives = 333/490 (68%), Gaps = 55/490 (11%)

Query  129  FNYWWLSLIMIGGLRL---AMRQYFLGDWFAAAAQHVPFAQRDDGLPKVAIYGAGAAGNQ  185
            F  W + L++IGG RL     R+YF+++            ++   L    + GAG +G+ 
Sbjct  109  FITWMMHLLLIGGSRLFWRVYRRYFIDNA----------VEKKATL----VVGAGQGGSV  154

Query  186  LVAALRMDRAMR--PVAFIDDDA-----SISDRVIAGLQVYRPEQLDQMINVTGAQEILL  238
            L+  +   + MR  PV  +DDD      +I++RV   +Q Y  E++ ++++    + I++
Sbjct  155  LIREMLRSQDMRMQPVLAVDDDKNKQKMTITERV--KVQGY-VEDIPELVKKFRIKKIII  211

Query  239  AIPSSTRTRRREILNF--LEGFPLHVRSVPGIMDLASGRVKVDDIQEVDIGDLLGRDTVP  296
            AIP+ ++ R  EI ++  +EG  L    +P I D+ SG + V++++ V++ DLLGRD V 
Sbjct  212  AIPTLSQKRLNEINKICNIEGVELF--KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVE  269

Query  297  AQPDLLERCITEQTVLVTGAGGSIGSELCRQILGQAPKYLLLFDHSEFNLYSILSELEQR  356
             +  L+ R +T++T+LVTGAGGSIGSE+CRQ+    P+ ++L++H+E ++YSI  EL + 
Sbjct  270  LDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKT  329

Query  357  VSRESLTVSLVPILGSVRNQSQLLDIMKTWRVDTVYHAAAYKHVPMVEHNITEGLMNNVI  416
             +     + +VP+++ V+N++++L++M+  +  +VYHAAA KHVP++E N  E++ NN++
Sbjct  330  YGN---RIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNIL  386

Query  417  GTLHTAQAALQAGVANFVLISTDKAVRPTNVMGSTKRLAEMTLQALSREVAPVLFGDSGK  476
            GT + A++A ++ V++FV+ISTDKAV P+NVMG+TKR+AEM +Q+L+ + +         
Sbjct  387  GTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNS---------  437

Query  477  VSQVNKTRFTMVRFGNVLGSSGSVIPLFHKQIKAGGPLTVTHPKITRYFMTIPEAAQLVI  536
                 KT F  VRFGNVLGS GSVIPLF +QI +GGP+TVTHP +TRYFMTIPEA++LV+
Sbjct  438  -----KTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVL  492

Query  537  QAGSMGKGGDVFVLDMGEPVKIVELAEKMIHLSGFSVRSERNPMGDISIQFTGLRPGEKL  596
            QAG++++GG+VFVLDMG PVKIV+LA ++I+LSG       +   DI+I+F+G+RPGEKL
Sbjct  493  QAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-------KKEEDIGIEFSGIRPGEKL  545

Query  597  YEELLIGDNV  606
            YEELL  +++
Sbjct  546  YEELLNKNEI  555

433) wbpM in NC_021505


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  293 bits (1096),  Expect = 2e-80, Method: Compositional matrix adjust.
 Identities = 208/488 (43%), Positives = 336/488 (69%), Gaps = 51/488 (10%)

Query  119  FNYWWLSLIMVGGLRL---AMRQYFLGDWFATAVQHVPFANRNDGLPRVAIYGAGSAGNQ  175
            F  W + L+++GG RL     R+YF+++    AV+      ++  L    + GAG +G+ 
Sbjct  109  FITWMMHLLLIGGSRLFWRVYRRYFIDN----AVE------KKATL----VVGAGQGGSV  154

Query  176  LVAALRMGKAMR--PVAFIDDDG-----SITDRVIAGLQVYQPEQLQRMIDDTGAEEILL  228
            L+  +  ++ MR  PV  +DDD      +IT+RV   +Q Y  E++  ++       I++
Sbjct  155  LIREMLRSQDMRMQPVLAVDDDKNKQKMTITERV--KVQGY-VEDIPELVKKFRIKKIII  211

Query  229  ALPSVSRSRRREILNLLEGYPLHVRSVPGFMDLASGRVKVDDIQEVDIADLLGRDAVPAQ  288
            A+P++S+ R  EI ++ +   +++  +P + D+ SG + V++++ V++ DLLGRD+V  +
Sbjct  212  AIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELD  271

Query  289  GDLLQHCIIDQTVMVTGAGGSIGSELCRQILGQTPRTLLLFEHSEFNLYTIAGELEQRIL  348
              L+ + + ++T++VTGAGGSIGSE+CRQ+    P+ ++L+ H+E ++Y+I  EL +   
Sbjct  272  MALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTY-  330

Query  349  REGLAVQLIPILGSVRDQAKMLDVMRAWQVDTVYHAAAYKHVPIVEHNIAEGLSNNVFGT  408
              G  ++++P+++ V++++++L+VM   +  +VYHAAA KHVP++E N  E++ NN++GT
Sbjct  331  --GNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGT  388

Query  409  LYTAQAALQAGVSNFVLISTDKAVRPTNVMGSTKRLAEMVLQALSNELAPVLMGDTGNVS  468
               A++A ++ VS+FV+ISTDKAV P+NVMG+TKR+AEMV+Q+L+++             
Sbjct  389  KNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNED-------------  435

Query  469  QVNKTRFTMVRFGNVLGSSGSVIPLFHKQIKNGGPLTVTHPKITRYFMTIPEAAQLVIQA  528
              +KT F  VRFGNVLGS GSVIPLF +QI +GGP+TVTHP +TRYFMTIPEA++LV+QA
Sbjct  436  -NSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQA  494

Query  529  GSMGQGGDVFVLDMGEPVKIVELAEKMIHLSGFSIRSERNPLGDIAINFTGLRPGEKLYE  588
            G+++QGG+VFVLDMG PVKIV+LA ++I+LSG   + E     DI+I+F+G+RPGEKLYE
Sbjct  495  GALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG---KKE----EDIGIEFSGIRPGEKLYE  547

Query  589  ELLIGDNV  596
            ELL  +++
Sbjct  548  ELLNKNEI  555

434) PputW619_1414 in NC_010501


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  293 bits (1097),  Expect = 2e-80, Method: Compositional matrix adjust.
 Identities = 205/487 (43%), Positives = 332/487 (69%), Gaps = 46/487 (9%)

Query  124  FNYWWLSLVIMGGLRL---IMRQYFLGDWFSGAHQIPFTNRDDGQVKVAIYGAGTAGNQL  180
            F  W + L+++GG RL   + R+YF++            N  + +  + + GAG +G+ L
Sbjct  109  FITWMMHLLLIGGSRLFWRVYRRYFID------------NAVEKKATLVV-GAGQGGSVL  155

Query  181  LAALRMGRVMR--PVAFIDDDGDLANRVISG---LQVYKPKHLEQMIKETGAQEILLALP  235
            +  +  ++ MR  PV  +DDD +  +  I+    +Q Y   ++ +++K    + I++A+P
Sbjct  156  IREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGY-VEDIPELVKKFRIKKIIIAIP  214

Query  236  TASRARRKEILAFLEPYPLHVRSVPAFADLASGRVKVDDIQDVDIADLLGRDPVPAQDEL  295
            T S+ R +EI  + +   +++  +P + D+ SG + V++++ V++ DLLGRDPV  +  L
Sbjct  215  TLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMAL  274

Query  296  LWRCNKKRTVLVTGAGGSIGSELCRQIIGLEPKTLLLFDHSEFNLYSILTELEQRITRES  355
            + R   ++T+LVTGAGGSIGSE+CRQ+  ++P+ ++L++H+E ++YSI  EL +      
Sbjct  275  ISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNR-  333

Query  356  LAVQLLPILGSVRNQQHLADVMSTWRVDTVYHAAAYKHVPMVEHNVAEGILNNVFGTLCT  415
              ++++P+++ V+N+ ++ +VM+  +  +VYHAAA KHVP++E N  E+I NN++GT   
Sbjct  334  --IEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNV  391

Query  416  AQAALQTGVANFVLISTDKAVRPTNVMGSSKRLSELILQALSREAAPVMYGDSSKISRVN  475
            A++A +  V++FV+ISTDKAV P+NVMG++KR++E+++Q+L+ + +              
Sbjct  392  AESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNS--------------  437

Query  476  KTRFTMVRFGNVLGSSGSVIPLFHQQIKAGGPLTVTHPKITRYFMTIPEAAQLVVQAGAM  535
            KT F  VRFGNVLGS GSVIPLF +QI +GGP+TVTHP +TRYFMTIPEA++LV+QAGA+
Sbjct  438  KTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGAL  497

Query  536  GQGGDVFVLDMGEPVKIVELAEKMVHLSGFSVRSPDNPHGDIAIEFSGLRPGEKLYEELL  595
            +QGG+VFVLDMG PVKIV+LA ++++LSG       + + DI+IEFSG+RPGEKLYEELL
Sbjct  498  AQGGEVFVLDMGKPVKIVDLAKNLIRLSG-------KKEEDIGIEFSGIRPGEKLYEELL  550

Query  596  IGDDVSP  602
              +++ P
Sbjct  551  NKNEIHP  557

435) L483_06580 in NC_021491


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  293 bits (1096),  Expect = 2e-80, Method: Compositional matrix adjust.
 Identities = 202/487 (42%), Positives = 332/487 (69%), Gaps = 46/487 (9%)

Query  124  FNYWWLSMVIIGGLRL---IMRQYFLGDWFTGAHQIPFANRDDGLIKVAIYGAGTAGNQL  180
            F  W + +++IGG RL   + R+YF+++           ++   L+     GAG +G+ L
Sbjct  109  FITWMMHLLLIGGSRLFWRVYRRYFIDNA---------VEKKATLVV----GAGQGGSVL  155

Query  181  LAALRMGRVMR--PVAFIDDDSDLANRVISG---LQVYKPKHLQQMIKETGAQEILLALP  235
            +  +  ++ MR  PV  +DDD +  +  I+    +Q Y   ++ +++K    + I++A+P
Sbjct  156  IREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGY-VEDIPELVKKFRIKKIIIAIP  214

Query  236  SASRARRKEILSFLEPYPLHVRSVPAFADLASGRVKVDDIQDVDIADLLGRDPVPAQEGL  295
            + S+ R +EI  + +   +++  +P + D+ SG + V++++ V++ DLLGRDPV  + +L
Sbjct  215  TLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMAL  274

Query  296  LERCIYKQTVLVTGAGGSIGAELCRQIIGLGPTTLLLFDHSEFNLYSILSELEQRILRES  355
            + R + ++T+LVTGAGGSIG+E+CRQ+  ++P  ++L++H+E ++YSI  EL +     +
Sbjct  275  ISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTY---G  331

Query  356  LSVRLLPILGSVRNQQHLVDVMATWRVDTVYHAAAYKHVPMVEHNIAEGILNNVYGTLCT  415
              + ++P+++ V+N+ ++++VM   +  +VYHAAA KHVP++E N  E+I NN+ GT   
Sbjct  332  NRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNV  391

Query  416  AQAALQTGVANFVLISTDKAVRPTNVMGSTKRLSELILQALSREAAPVMYGDSSKIARVN  475
            A++A +  V++FV+ISTDKAV P+NVMG+TKR++E+++Q+L+ + +              
Sbjct  392  AESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNS--------------  437

Query  476  KTRFTMVRFGNVLGSSGSVIPLFHKQIKAGGPLTVTHPKITRYFMTIPEAAQLVVQAGAM  535
            KT F  VRFGNVLGS GSVIPLF +QI +GGP+TVTHP +TRYFMTIPEA++LV+QAGA+
Sbjct  438  KTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGAL  497

Query  536  GQGGDVFVLDMGEPVRIVELAEKMIHLSGLSVRSQGNPQGDIAIDFTGLRPGEKLYEELL  595
            +QGG+VFVLDMG PV+IV+LA ++I+LS       G+ + DI+I+F+G+RPGEKLYEELL
Sbjct  498  AQGGEVFVLDMGKPVKIVDLAKNLIRLS-------GKKEEDIGIEFSGIRPGEKLYEELL  550

Query  596  IGDDVSP  602
              +++ P
Sbjct  551  NKNEIHP  557

436) SPISAL_08115 in NC_021291


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  292 bits (1095),  Expect = 3e-80, Method: Compositional matrix adjust.
 Identities = 204/458 (45%), Positives = 314/458 (69%), Gaps = 22/458 (4%)

Query  119  WLIALLLIGGSRFLIRAWHQADR---HRRAAEEPVIIYGAGSAGLQLVSSLLSTGDY--L  173
            W++ LLLIGGSR++   W+   R   +      + ++ GAG +G  L+  +L + D    
Sbjct  112  WMMHLLLIGGSRLF---WRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQ  168

Query  174  PVAFVDDNPRLHGTMIRG---VPVYPPMRLGRLIAQLGVGNILLALPTATLGRRREILAT  230
            PV  VDD+   +   I     V  Y    +  L+ ++ + +I++A+PT +  R  EI   
Sbjct  169  PVLAVDDDKNKQKMTITERVKVQGYVE-DIPELVKKFRIKKIIIAIPTLSQKRLNEINKI  227

Query  231  LERYPVHVRTLPSMTDLVSGAARLQDIREVDVEDLLGREAVPPDPDLLGRCVTRQSVMIT  290
             +   V++  +P++ D++SG   +++++ V+VEDLLGR++V  D  L++R +T +++++T
Sbjct  228  CNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVT  287

Query  291  GAGGSIGSELCRQVLAQSPRRLVLLERSELALYRIEQELTALASVNDQTIEIIPVLGSVL  350
            GAGGSIGSE+CRQV    P++++LL ++E ++Y I+QEL+      ++ IE++PV++ V 
Sbjct  288  GAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELS---KTYGNRIEFVPVIADVQ  344

Query  351  HRKRMRHSLERYGVDTVYHAAAYKHVPLVEANPVEGVRNNGFGTWHAALAAEDAGVSHFV  410
            ++ R+ + ++ +   +VYHAAA KHVPL+E NP E++RNN +GT + A +A ++ VS FV
Sbjct  345  NKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFV  404

Query  411  LVSTDKAVRPTSVMGASKRIAEFAVQAIAARGSTTRFGIVRFGNVLDSSGSVIPLFRRQI  470
            ++STDKAV P++VMGA+KRIAE  +Q++    S T F  VRFGNVL+S GSVIPLF+ QI
Sbjct  405  MISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQI  464

Query  471  REGGPVTVTHPDATRYFMTIPEAASLVIQSGAMANAGEVFVLDMSEPVRIRDLARRLIQL  530
              GGPVTVTHP+ TRYFMTIPEA+ LV+Q+GA+A++GEVFVLDM+ PV+I DLA+ LI+L
Sbjct  465  ESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRL  524

Query  531  SGCSVRDQGNAKGDIAIEFIGLRPGEKLHEELVQGDDI  568
            S       G+   DI+IEF G+RPGEKL EEL++ ++I
Sbjct  525  S-------GKKEEDIGIEFSGIRPGEKLYEELLNKNEI  555

437) N175_02210 in NC_022223


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  292 bits (1094),  Expect = 3e-80, Method: Compositional matrix adjust.
 Identities = 199/456 (44%), Positives = 312/456 (69%), Gaps = 21/456 (4%)

Query  120  LAILSLGGPRILIRTIYYHYYKR---QKPNVFIYGAGSTGRDLAYALIQGDEY--HPVIL  174
            + +L +GG+R L++ +Y +Y+     +K   ++ GAG  G  L   ++++++   +PV+ 
Sbjct  114  MHLLLIGGSR-LFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLA  172

Query  175  LDDDPIKAGQIMFGIRVHHSDQFERLQSLYQPVKLLLAINNMNK--GERLRLLERLSHW-  231
            +DDD  K  ++ +  RV   +  E +  L +  ++   I  +      RL  ++++ +  
Sbjct  173  VDDDKNKQ-KMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIE  231

Query  232  PIEVQSVPSVEDIAAGRAQATDVQDLDISDLLGRAPIAPDKALLSRNITGKSVMVTGAGG  291
             +E+  +P++ED+ +G  +  +++ +++ DLLGR P+  D AL+SR++T K+++VTGAGG
Sbjct  232  GVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGG  291

Query  292  SIGSELCRQIIAQKPKTLVLFELNEYNLYSIDQELQAIKQNLKLETKIVAALGSVQKENR  351
            SIGSE+CRQ+    P+ ++L+   E ++YSI+QEL     N ++E  +V+ ++ VQ+  R
Sbjct  292  SIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGN-RIE--FVPVIADVQNKTR  348

Query  352  LHKLMVAHKVNTIYHAAAYKHVPLVEDNVIEGIRNNVFGTLACATAAIEAGVESFTLIST  411
            +  +M   K  ++YHAAA KHVPL+E N  E+IRNN++GT   A +A E+ V  F +IST
Sbjct  349  ILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMIST  408

Query  412  DKAVRPTNIMGTSKRMAELVLQALADKGTKTIFTMVRFGNVLGSSGSVVPLFKKQIKAGG  471
            DKAV P+N+MG++KR+AE+V+Q+L +  +KT F  VRFGNVLGS GSV+PLFK+QI +GG
Sbjct  409  DKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGG  468

Query  472  PVTVTHPDIIRYFMLIPEAAQLVIQAGAMGHNGQVFVLDMGEPVKIVDLAKRMIHLMGMK  531
            PVTVTHP++ RYFM IPEA++LV+QAGA+++ G+VFVLDMG PVKIVDLAK +I+L G K
Sbjct  469  PVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKK  528

Query  532  EYFDGNSNEGDIEIKFTGLRPGEKLYEELLIGDNVE  567
                    E DI I F+G+RPGEKLYEELL  ++++
Sbjct  529  --------EEDIGIEFSGIRPGEKLYEELLNKNEIH  556

438) VAA_02504 in NC_015633


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  292 bits (1094),  Expect = 3e-80, Method: Compositional matrix adjust.
 Identities = 199/456 (44%), Positives = 312/456 (69%), Gaps = 21/456 (4%)

Query  120  LAILSLGGPRILIRTIYYHYYKR---QKPNVFIYGAGSTGRDLAYALIQGDEY--HPVIL  174
            + +L +GG+R L++ +Y +Y+     +K   ++ GAG  G  L   ++++++   +PV+ 
Sbjct  114  MHLLLIGGSR-LFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLA  172

Query  175  LDDDPIKAGQIMFGIRVHHSDQFERLQSLYQPVKLLLAINNMNK--GERLRLLERLSHW-  231
            +DDD  K  ++ +  RV   +  E +  L +  ++   I  +      RL  ++++ +  
Sbjct  173  VDDDKNKQ-KMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIE  231

Query  232  PIEVQSVPSVEDIAAGRAQATDVQDLDISDLLGRAPIAPDKALLSRNITGKSVMVTGAGG  291
             +E+  +P++ED+ +G  +  +++ +++ DLLGR P+  D AL+SR++T K+++VTGAGG
Sbjct  232  GVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGG  291

Query  292  SIGSELCRQIIAQKPKTLVLFELNEYNLYSIDQELQAIKQNLKLETKIVAALGSVQKENR  351
            SIGSE+CRQ+    P+ ++L+   E ++YSI+QEL     N ++E  +V+ ++ VQ+  R
Sbjct  292  SIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGN-RIE--FVPVIADVQNKTR  348

Query  352  LHKLMVAHKVNTIYHAAAYKHVPLVEDNVIEGIRNNVFGTLACATAAIEAGVESFTLIST  411
            +  +M   K  ++YHAAA KHVPL+E N  E+IRNN++GT   A +A E+ V  F +IST
Sbjct  349  ILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMIST  408

Query  412  DKAVRPTNIMGTSKRMAELVLQALADKGTKTIFTMVRFGNVLGSSGSVVPLFKKQIKAGG  471
            DKAV P+N+MG++KR+AE+V+Q+L +  +KT F  VRFGNVLGS GSV+PLFK+QI +GG
Sbjct  409  DKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGG  468

Query  472  PVTVTHPDIIRYFMLIPEAAQLVIQAGAMGHNGQVFVLDMGEPVKIVDLAKRMIHLMGMK  531
            PVTVTHP++ RYFM IPEA++LV+QAGA+++ G+VFVLDMG PVKIVDLAK +I+L G K
Sbjct  469  PVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKK  528

Query  532  EYFDGNSNEGDIEIKFTGLRPGEKLYEELLIGDNVE  567
                    E DI I F+G+RPGEKLYEELL  ++++
Sbjct  529  --------EEDIGIEFSGIRPGEKLYEELLNKNEIH  556

439) NMBM01240149_0364 in NC_017514


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  292 bits (1093),  Expect = 4e-80, Method: Compositional matrix adjust.
 Identities = 208/464 (45%), Positives = 325/464 (71%), Gaps = 26/464 (5%)

Query  114  VYF---LLLFVSVTGSRM---VLRGLLSEHPKKQMAPVIIYGAGQAGRQLLEAV---KQM  164
            +YF   ++ ++ + GSR+   V R  + +++  + A +++ GAGQ+G  L+  +   ++M
Sbjct  107  LYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEKKATLVV-GAGQGGSVLIREMLRSQDM  165

Query  165  REYSAAAFVDDDPKLWRTVICGLAV--YRPDDIAALIGRYGVEKILLAIPSATQEQRRRI  222
            R  +  A  DD  K   T+   + V  Y  +DI+ L+ ++ + KI++AIP+ +Q +R   
Sbjct  166  RMQPVLAVDDDKNKQKMTITERVKVQGY-VEDIPELVKKFRIKKIIIAIPTLSQ-KRLNE  223

Query  223  INKL-EAYPCEVLTIPGMKDLMDGKISIGTLKKISVSDLLGRDSVTPDDRLMSADIEGKT  281
            INK+ +    E++ +P + D++ G + +  LKK+ V DLLGRD+V  D  L+S ++  KT
Sbjct  224  INKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKT  283

Query  282  VMVTGAGGSIGSELCRQIIRRRPEKLLLFELSEFALYAVEKELRETCIQKRLDTEILPFL  341
            ++VTGAGGSIGSE+CRQ+ +  P+K++L+  +E ++Y++++EL  T  ++    E++P +
Sbjct  284  ILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNR---IEFVPVI  340

Query  342  GSVQNRTLLEHVMTAFSVATVYHAAAYKHVPMVEFNTVEGIRNNIFGTLECALAATASGV  401
            + VQN+T + +VM  F   +VYHAAA KHVP++E+N  E+IRNNI+GT + A +A  + V
Sbjct  341  ADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEV  400

Query  402  ETFVLISTDKAVRPTNTMGASKRMAELCLQALAAEPGQKTRFSMVRFGNVLGSSGSVVPL  461
              FV+ISTDKAV P+N MGA+KR+AE+ +Q+L  + + KT F  VRFGNVLGS GSV+PL
Sbjct  401  SKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNS-KTSFVAVRFGNVLGSRGSVIPL  459

Query  462  FEKQIAEGGPLTLTHPDITRYFMTIPEAAQLVIQAGAMGTGGDVFVLDMGESVKIIDLAR  521
            F +QI  GGP+T+THP++TRYFMTIPEA++LV+QAGA++ GG+VFVLDMG +VKI+DLA+
Sbjct  460  FKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAK  519

Query  522  QMITLSGLKPKTPEQPDGDIEILITGLRPGEKLYEELLIGDNVR  565
            ++I LSG K       + DI I ++G+RPGEKLYEELL  ++++
Sbjct  520  NLIRLSGKK-------EEDIGIEFSGIRPGEKLYEELLNKNEIH  556

440) rfbU in NC_012578


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  292 bits (1093),  Expect = 4e-80, Method: Compositional matrix adjust.
 Identities = 198/453 (44%), Positives = 311/453 (69%), Gaps = 21/453 (4%)

Query  123  LTLGGPRIFIRTIYYHYYKR---QKPNVFIYGAGSTGRDLAYALIQGDEY--HPVIFLDD  177
            L +GG+R+F + +Y +Y+     +K   ++ GAG  G  L   ++++++   +PV+ +DD
Sbjct  117  LLIGGSRLF-WRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDD  175

Query  178  DPAKTGQIIFGLRVHHSSDFESLRNLYEPVKMLIAINNIGK--NTRIKLLERLSHW-PIE  234
            D  K  ++ +  RV   +  E + +L    ++   I  I    + R++ ++++ +   +E
Sbjct  176  DKNKQ-KMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVE  234

Query  235  IQSVPSVEDIAAGRAKATDVQDLDIADLLGRAPVEPDLALLQKNITEKSVMVTGAGGSIG  294
            +  +P++ED+ +G     +++ +++ DLLGR PVE D+AL+ +++T+K+++VTGAGGSIG
Sbjct  235  LFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIG  294

Query  295  SELCRQILAQKPKTLVLFELNEYNLYTIDQELQAIKQNLKLNTKIVAALGSVQRENRVKK  354
            SE+CRQ+    P+ ++L+   E ++Y+I+QEL     N      +V+ ++ VQ   R+  
Sbjct  295  SEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGN---RIEFVPVIADVQNKTRILE  351

Query  355  LMQAHQVETVYHAAAYKHVPLVEDNVIEGIRNNVFGTLACANAAIEAGVKNFTLISTDKA  414
            +M+  +  +VYHAAA KHVPL+E N  E+IRNN++GT   A++A E+ V +F +ISTDKA
Sbjct  352  VMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKA  411

Query  415  VRPTNIMGASKRMAELVLQALADKNSTTIFTMVRFGNVLGSSGSVVPLFKKQIRAGGPVT  474
            V P+N+MGA+KR+AE+V+Q+L + NS T F  VRFGNVLGS GSV+PLFK+QI +GGPVT
Sbjct  412  VNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVT  471

Query  475  VTHPDIIRYFMLIPEAAQLVIQAEAMSHNGQVFVLDMGEPVKIVDLAKRMIHLMGMKEFC  534
            VTHP++ RYFM IPEA++LV+QA A+++ G+VFVLDMG PVKIVDLAK +I+L G K   
Sbjct  472  VTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKK---  528

Query  535  DGRSDEGDIEIKFTGLRPGEKLYEELLIGENVE  567
                 E DI I F+G+RPGEKLYEELL  ++++
Sbjct  529  -----EEDIGIEFSGIRPGEKLYEELLNKNEIH  556

441) Rleg2_6495 in NC_011371


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  291 bits (1088),  Expect = 1e-79, Method: Compositional matrix adjust.
 Identities = 193/464 (42%), Positives = 316/464 (69%), Gaps = 26/464 (5%)

Query  134  YWLGDAYQRILHKNMLAK--VLIYGAGKAGRQLAAALTNSAELNVVGYL---DDDPRLKG  188
            +W    Y+R +  N + K   L+ GAG++G  L   +  S ++ +   L   DD  + K 
Sbjct  125  FW--RVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKM  182

Query  189  GVMGGLPI--YDPSDLPVLAETLGVHNVLLALPSASRQRRNEILEHIRKARVNVRTLPDL  246
             +   + +  Y   D+P L   + + ++++A+P+ S++R NEI        V++  +P++
Sbjct  183  TITERVKVQGY-VEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNI  241

Query  247  TALAQGRVAVSDIRELEIEDLLGREAVAPRQELLDKAMRNKVVMVTGAGGSIGGELCRQI  306
              +  G + V++++ +E+EDLLGR++V     L+ + + NK ++VTGAGGSIG+E+CRQ+
Sbjct  242  EDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQV  301

Query  307  LRNAPSSLILLDQNEFALYNIDAELRKLAELYEHENLQIVPILCSVRDQDRVEHIIQSWR  366
             +  P  +ILL++ E ++Y+I+ EL K    Y +  +++VP++  V+++ R+ ++++  +
Sbjct  302  SKFDPQKIILLGHGENSIYSIHQELSKT---YGN-RIEFVPVIADVQNKTRILEVMNEFK  357

Query  367  PQTLYHAAAYKHVPLVEHNAVEGIKNNVMGTLVAARAARKYGVSNFVLISTDKAVRPTNV  426
            P ++YHAAA KHVPL+E N+ E+I+NN++GT   A +A+   VS+FV+ISTDKAV P+NV
Sbjct  358  PYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNV  417

Query  427  MGASKRLAEMVLQALAAESATDRLRTNFSMVRFGNVLGSSGSVVPLFRQQIKEGGPVTLT  486
            MGA+KR+AEMV+Q+L  +++    +T+F  VRFGNVLGS GSV+PLF++QI  GGPVT+T
Sbjct  418  MGATKRIAEMVIQSLNEDNS----KTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVT  473

Query  487  HREITRYFMTISEASQLVIQAGAMGEGGDVFLLDMGEPVRIADLARKMVELSGLSVRDDI  546
            H E+TRYFMTI+EAS+LV+QAGA+++GG+VF+LDMG PV+I DLA++++ LSG       
Sbjct  474  HPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-------  526

Query  547  SPEGDIELSVTGLRPGEKLYEELLIGDNPETTE-HPRIMKARED  589
              E DI +  +G+RPGEKLYEELL  ++ +  +   +I +++ D
Sbjct  527  KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVD  570

442) Dtur_0573 in NC_011661


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  291 bits (1091),  Expect = 5e-80, Method: Compositional matrix adjust.
 Identities = 217/485 (45%), Positives = 341/485 (71%), Gaps = 9/485 (1%)

Query  70   KLYRTLWEYFSLEALKELTLAITLEKIIFYLSYLIFPIQGLPRSIILISYFTSLLLLFSV  129
            +LY+  WEY S+  L  +  A+T   ++  L   ++  ++    + +I+    LLL+ + 
Sbjct  63   NLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGS  122

Query  130  RAFTRW-VYESKKSIDKVNYAQKKRVVIIGAGDAGEKILREIKTHKNLNYDVVGFLDDDP  188
            R F  W VY  +  ID+    +KK  +++GAG++G  ++RE+   +++  + V  +DDD 
Sbjct  123  RLF--WRVY-RRYFIDNA--VEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDK  177

Query  189  kkigktihgikilgP-ISSLHKVVRGNGVQEILVAIPSAPPSLLKNILSMASKLKLPVKT  247
            +K   TI     +   +  +  +V+   ++ I++AIP+ +   L++I  + +   + +  
Sbjct  178  NKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFK  237

Query  248  LPGIWELIDGKVTISKIRDVKIEDLLERDVIDLDSEKIGEYLRGKKVLVTGAGGSIGAEI  307
            +P I +++ G + +++++ V +EDLL RD ++LD   I+  L  K +LVTGAGGSIG+EI
Sbjct  238  MPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEI  297

Query  308  CRQVARYGPQKLILLGRGENSIFNIELELKNTYPN-LNICSYIADIKDRDRIFYIFSMEK  366
            CRQV++++PQK+ILLG+GENSI++I+ EL +TY N +++ + IAD++++ RI+ + +  K
Sbjct  298  CRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFK  357

Query  367  PEIVFHSAAHKHVPLMEENPDEAVFNNVFGTINVMDASKEYGVKKFIFISTDKAVYPANI  426
            P  V+H+AAHKHVPLME NP+EA+ NN++GT NV +++KE  V KF+ ISTDKAV P+N+
Sbjct  358  PYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNV  417

Query  427  MGATKRVGEMLVRYYN-SHSQTEYIAVRFGNVLGSRGSVLEVFKKQIEMGGPITITHKDM  485
            MGATKR++EM+++  N  +S+T ++AVRFGNVLGSRGSV+ +FK+QIE GGP+T+TH +M
Sbjct  418  MGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEM  477

Query  486  ERYFMTIPEAVGLVLQAGAIGKSGDLFVLDMGKPVKIIDLAKNFIELSGYSVEDIEIKII  545
             RYFMTIPEA  LVLQAGA++++G++FVLDMGKPVKI+DLAKN+I LSG   EDI I + 
Sbjct  478  TRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFS  537

Query  546  GLRPG  550
            G+RPG
Sbjct  538  GIRPG  542

443) CXIVA_25490 in NC_015737


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  291 bits (1091),  Expect = 6e-80, Method: Compositional matrix adjust.
 Identities = 231/536 (44%), Positives = 343/536 (64%), Gaps = 60/536 (11%)

Query  77   LYKSIWRFASYSELMRMILATVITGASYAACM-------SGFVRRMPVSYFVFGIIIQFV  129
            LY   W +AS SELM  +L +V ++   +  +       S F+R     YF+   +++++
Sbjct  64   LYHRAWEYASVSELMS-VLKAVTSSIVVTLLLVSLLISESPFLR----LYFI-TWMMHLL  117

Query  130  LTLGIRF---SYR--FILLLRARRNEDEAGKNVMLIGAGAAGQMIFRDIRRSRETSETVC  184
            L  G R+    YR  FI       ++    K  +++GAG +G +++R++ RS++      
Sbjct  118  LIGGSRLFWRVYRRYFI-------DNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPV  170

Query  185  CFIDDNPNKWGRYI-DNVPVFGGRESILEAVRKFEIEKIYVAIPSAAPKDKREILRICNE  243
              +DD+ NK    I + V V G  E I E V+KF I KI +AIP+ + K   EI +ICN 
Sbjct  171  LAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNI  230

Query  244  TSCELMNLPGMYQIYTGQVSISKMKPVQIEDLLGRDPIRPDMKEVFKYITGKVVLITGVG  303
             + EL ++P + ++ +G++ ++++K V++EDLLGRDP+  DM  + + +T K +L+TG G
Sbjct  231  EGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAG  290

Query  304  -SIGSELARQIASHHPKHLILFDVYENNAYEVQQELKKKYPD-LELDTIIGSVRDSRKVF  361
             SIGSE+ RQ++  +P+ +IL++  EN+ Y ++QEL K Y + +E+  +I+ V++  +++
Sbjct  291  GSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRIL  350

Query  362  QLFEKFRPEIVYHAAAHKHVPLMEDSPCEAIKNNAIGTYKTAYAAMAHGCKRFVLISTDK  421
            ++ + F+P  VYHAAAHKHVPLME +P EAI+NN +GT + A +A      +FV+ISTDK
Sbjct  351  EVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDK  410

Query  422  AVNPTNIMGASKRLCEMIIQAFDAKIKEGKAYEIPQLFTHGVKDAMTAPEVIEALKKTST  481
            AVNP+N+MGA+KR+ EM+IQ+++                                 ++ T
Sbjct  411  AVNPSNVMGATKRIAEMVIQSLNED-------------------------------NSKT  439

Query  482  EFVAVRFGNVLGSNGSVIPLFKKQIAAGGPVTVTHPDIIRYFMTIPEAVSLVLLAGTYAK  541
             FVAVRFGNVLGS GSVIPLFK+QI +GGPVTVTHP++ RYFMTIPEA  LVL AG+ A+
Sbjct  440  SFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQ  499

Query  542  GGEIFVLDMGEPVKIDTLARNLIRLSGYTPDVDIKIEFTGLRKGEKLFEEKLMAEE  597
            GGE+FVLDMG PVKI  LA+NLIRLSG   + DI IEF+G+R GEKL+EE L  +E
Sbjct  500  GGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIGIEFSGIRPGEKLYEELLNKNE  554

444) CK1_17560 in NC_021014


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  291 bits (1091),  Expect = 6e-80, Method: Compositional matrix adjust.
 Identities = 232/551 (43%), Positives = 354/551 (65%), Gaps = 64/551 (11%)

Query  36   VFGCM-HLYNSVWRFASFHELIKITVASVITGVLHIVGITIFWGRMPASY---YLIGIML  91
            +F+ + +LY+  W +AS  EL+  +V   +T+ + +  + +      +++   Y+I  M+
Sbjct  57   IFAYVFNLYHRAWEYASVSELM--SVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMM  114

Query  92   QFFLTVGVRF---SYR--FVLLernrreksereersknVMIIGAGEAGRTIVRELQNAKE  146
            +++L  G R+    YR  F+          +     K  +++GAG++G  ++RE+  +++
Sbjct  115  HLLLIGGSRLFWRVYRRYFI----------DNAVEKKATLVVGAGQGGSVLIREMLRSQD  164

Query  147  TN-SRVRCLIDDNPNKWGRYMEGVPVVGGRDDIFLNVDKYHINQILLAIPTATPHQKRDI  205
                 V  + DD+ ++     E V V G  +DI   V K++I++I++AIPT +  +  +I
Sbjct  165  MRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEI  224

Query  206  LNICKETGCELKQLPGVYQLVNGEVSLSKMKKVAVEDLLGRDTIKVNMSEIFQYLKGKRI  265
             +IC+  G EL ++P + ++++GE+ ++++KKV VEDLLGRD + ++M+ I + L  K I
Sbjct  225  NKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTI  284

Query  266  LVTGGGGSIGSELCRQIAGHEPELLVIFDIYENNAYDIEQELKASYPN-LNLKVLIGSVR  324
            LVTG+GGSIGSE+CRQ++  +P+ +++++  EN+ Y I+QEL  +Y N +++  +I+ V+
Sbjct  285  LVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQ  344

Query  325  DSKRINWVFETYKPEIVYHAAAHKHVPLMENSPCEAIKNNVVGTYKTAYAAMMNGCQRFV  384
            +  RI  V + +KP  VYHAAAHKHVPLME +P EAI+NN++GT + A +A      +FV
Sbjct  345  NKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFV  404

Query  385  LISTDKAVNPTNIMGASKRLCEMVVQSMNMVSHNGHTDWLPRLGGHRKDTLDALHDNEGQ  444
            +ISTDKAVNP+N+MGA+KR+ EMV+QS+N                               
Sbjct  405  MISTDKAVNPSNVMGATKRIAEMVIQSLN-------------------------------  433

Query  445  AYVSANHTSKTGTGTEFVAVRFGNVLGSNGSVIPLFKRQIEKGGPVTVTHPDIIRYFMTI  504
                 ++ SKT+    FVAVRFGNVLGS GSVIPLFK QIE GGPVTVTHP++ RYFMTI
Sbjct  434  -----EDNSKTS----FVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTI  484

Query  505  PEAVSLVLQAGTYAKGGEIFVLDMGAPVKIDTLARNLIKLSGYTPDVDIKVTYTGLRPGE  564
            PEA  LVLQAG+ A+GGE+FVLDMG PVKI  LA+NLI+LSG   + DI + ++G+RPGE
Sbjct  485  PEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIGIEFSGIRPGE  543

Query  565  KLYEEKLMAEE  575
            KLYEE L  +E
Sbjct  544  KLYEELLNKNE  554

445) swp_1595 in NC_011566


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  291 bits (1091),  Expect = 6e-80, Method: Compositional matrix adjust.
 Identities = 219/524 (42%), Positives = 352/524 (68%), Gaps = 46/524 (8%)

Query  65   IFAFVRLGLYRAVLRYMGLQALSAIIIGIVIA-------------ATSLVILSYYAEWTI  111
            IFA+V + LY+    Y ++  L +++ ++  +              ++++ L Y+  W +
Sbjct  57   IFAYV-FNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRL-YFITWMM  114

Query  112  PRTVPIIFSFFAFTFIGGSRFL----IRSVIGNGNKKQGEAVIIYGAGVSGRQLLTSLNQ  167
                        + +IGGSR++     R  I+N+  K++  V+  GAG +G  L+  + +
Sbjct  115  H-----------LLLIGGSRLFWRVYRRYFIDNAVEKKATLVV--GAGQGGSVLIREMLR  161

Query  168  SHEYH---AFAFVDDDESLQGNIIQGVHVHS-PTIIRKLIKQKSATKVLLALPSASRSQR  223
            S++ +    +A  DD +  +  I + V V++    I  L+K+    K+++A+P+ S+ + 
Sbjct  162  SQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRL  221

Query  224  QSILKKLEPLAVQILTIPGMSDLVCGKKQYSDIKEVEIDDLLGREAVPPRHELMCSNITN  283
            + I K  +  +V+++ +P + D++ G  + +++K VE++DLLGR++V     L+  ++TN
Sbjct  222  NEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTN  281

Query  284  KVVMVTGAGGSIGSEICRqvlklkpqklvlFELSEFGLYSIDRELSALALSLDIELEVLP  343
            K ++VTGAGGSIGSEICRQV K+ PQK++L+  +E ++YSI++ELS    + +  +E +P
Sbjct  282  KTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSK---TYGNRIEFVP  338

Query  344  LIGSVQKQNRVQAIMESFGVQTVYHAAAYKHVPLVEYNVVEGVRNNIFGTLYTAKAAIAA  403
            +I+ VQ++ R+  +M+ F   +VYHAAA KHVPL+EYN  E++RNNI+GT   A +A  +
Sbjct  339  VIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEG  398

Query  404  HVETFVLISTDKAVRPTNVMGTTKRMAELALQALAKESHRTRFCMVRFGNVLGSSGSVVP  463
            +V  FV+ISTDKAV P+NVMG+TKR+AE+ +Q+L  ++ +T F  VRFGNVLGS GSV+P
Sbjct  399  EVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIP  458

Query  464  LFKSQIAKNGPVTVTHPDITRFFMTIPEASQLVIQAGAMGKGGDVFVLDMGKPIKIVDLA  523
            LFK+QI   GPVTVTHP++TR+FMTIPEAS+LV+QAGA+++GG+VFVLDMGKP+KIVDLA
Sbjct  459  LFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLA  518

Query  524  VKMIHLSGFTVKDDQNPDGDIEVSYAGLRPGEKLYEELLIGDDV  567
             ++I+LSG       + + DI + ++G+RPGEKLYEELL  +++
Sbjct  519  KNLIRLSG-------KKEEDIGIEFSGIRPGEKLYEELLNKNEI  555

446) PsycPRwf_0250 in NC_009524


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  291 bits (1090),  Expect = 7e-80, Method: Compositional matrix adjust.
 Identities = 197/468 (43%), Positives = 325/468 (70%), Gaps = 23/468 (4%)

Query  176  SSIERDNVLVYGAGSSGTALLEAL--QDSPRYQVAAFIDDDN---RLTGGHILNKKIYPA  230
            +++E+   LV GAG +G+ L+  +   +  R Q    +DDD+   ++T  + ++ + Y  
Sbjct  136  NAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGY-V  194

Query  231  TQIESLVEELNIAQVFLAMPSVNRQRRREIINDLTNL-SVKIKELPSLQDIAEGKVTVST  289
             +I  LV  + I ++++A+P+++ Q+R + IN + N+ +V +  +P+++D+  G + V+ 
Sbjct  195  EDIPELVKKFRIKKIIIAIPTLS-QKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNN  253

Query  290  MRRVDILDVLDRQTVDPNPVLLAKNIEGKNVLVTGAGGSIGSELCRQIIKNKPKCLVLYE  349
            +++V++ D+L+R+ V+ +  L+++++  K +LVTGAGGSIGSE+CRQ+ K  P+ ++L  
Sbjct  254  LKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLG  313

Query  350  LSEYALYAIHQDLLAWQATNSVSSDNSPTHIIALLGNVNNQQKLNMVFNEYAINTVYHAA  409
             +E ++Y+IHQ+L          +  +  ++++++++V+N+ ++  V NE+   +VYHAA
Sbjct  314  HGENSIYSIHQEL--------SKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAA  365

Query  410  AYKHVPIVEYNPFEGVINNAKGTYHCVKAAVESNVETFVLISTDKAVRPTNIMGASKRLA  469
            A KHVP++EYNP E++ NN  GT +   +A E++V  FV+ISTDKAV P+N+MGA+KR+A
Sbjct  366  AHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIA  425

Query  470  ELVCQGFGNQNPSTKISMVRFGNVLGSSGSVVPLFTKQIAKGGPITVTHPEVTRYFMTIP  529
            E+V Q++ ++N+ T +  VRFGNVLGS GSV+PLF +QI  GGP+TVTHPE+TRYFMTIP
Sbjct  426  EMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIP  485

Query  530  EAANLVIQAGAMAQGGEVFVLDMGKPVKIVDLARRMIHLSGYEVKDENNPAGDIEIVFSG  589
            EA+ LV+QAGA+AQGGEVFVLDMGKPVKIVDLA+ +I+LSG       +   DI I FSG
Sbjct  486  EASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-------KKEEDIGIEFSG  538

Query  590  LRPGEKLYEELIIGDDNIEATQHSLIMQAREHSFELTDIENTLSELAS  637
            +RPGEKLYEEL+  ++         I +++ + +  T+++  + +L +
Sbjct  539  IRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLIN  586

447) Nmul_A0631 in NC_007614


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  291 bits (1091),  Expect = 7e-80, Method: Compositional matrix adjust.
 Identities = 227/544 (42%), Positives = 352/544 (65%), Gaps = 57/544 (10%)

Query  63   FGLYRGLWHYASLPDLRRILFavsasaaavPLVLYMLQILVGVPRTVLILAP-ILLLFIM  121
            F LY+  W+YAS+++L  +L   + +++ V  +L +  ++   P   L +   ++ L+++
Sbjct  62   FNLYHRAWEYASVSELMSVL--KAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLI  119

Query  122  GSSRLAYRFWKE-HRLYGRSKTGGNLVLVIGASDAAVGLVKELARNVEWRVAGFL--DDD  178
            G+SRL   FW+  +R +  +    +  LV+GA++++  L++E+ R+ + R+   L  DDD
Sbjct  120  GGSRL---FWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDD  176

Query  179  PAKRGLMLHG-FKVLGRINDLPEVARKLGVAHAIIALTSSASDRRKSYRTHSdrrrpdrl  237
              K+ + +    KV G ++D+PE+ +K+ +   IIA+ + +  R +      +       
Sbjct  177  KNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIE-----  231

Query  238  lrdrrralqlcaaaGVKALIVPSYNDLVSGNIKVSQIRTVEPEDLLGRDPVVLDNDGLHD  297
                          GV  + +P+ +D++SG++ V++++ VE EDLLGRDPV LD   +  
Sbjct  232  --------------GVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISR  277

Query  298  LLTGKTVLVTGAGGSIGSELCRQIVKFAPAQLVLFELNEFALYSIEQEFQADFPE-IPMI  356
             LT KT+LVTGAGGSIGSE+CRQ+ KF P +++L+   E ++YSI+QE+   + + I  +
Sbjct  278  ELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFV  337

Query  357  FAIGDVKDEARLSQVFLQYRPAIVFHAAAYKHVPLMEQENAWQAVLNNVRGTYVLAQTAI  416
              I+DV++ +R+ +V  +++P  V+HAAA KHVPLME  N+ +A+ NN+ GT  +A++A 
Sbjct  338  PVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEY-NPHEAIRNNILGTKNVAESAK  396

Query  417  RYGVEKFVLISTDKAVNPTNVMGASKRLAEMVCQALQQSIASPDSPTENASGKIVLGSRL  476
               V KFV+ISTDKAVNP+NVMGA+KR+AEMV Q+L++  +                   
Sbjct  397  EGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTS----------------  440

Query  477  ERRQEPRFVMVRFGNVLGSAGSVIPKFREQIEKGGPITVTHSEITRYFMSIPEAAQLVLQ  536
                   FV VRFGNVLGS GSVIP F++QIE GGP+TVTH+E+TRYFM+IPEA++LVLQ
Sbjct  441  -------FVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQ  493

Query  537  AGLMGGKRRGGEIFVLDMGEPIKIADLARDLIRLSGLSEDEIKIVYNGLRPGEKLYEELL  596
            AG ++   +GGE+FVLDMG P+KI DLA++LIRLSG  E++I I ++G+RPGEKLYEELL
Sbjct  494  AGALA---QGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELL  550

Query  597  ADDE  600
              +E
Sbjct  551  NKNE  554

448) capD2 in NC_019670


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  291 bits (1089),  Expect = 8e-80, Method: Compositional matrix adjust.
 Identities = 210/491 (43%), Positives = 327/491 (67%), Gaps = 50/491 (10%)

Query  119  FNYWWLSLIMIGGLRL---AMRQYFMGDWFSAAQHVPFTSRDDGLPKVAIYGAGAAGNQL  175
            F  W + L++IGG RL     R+YF+++            +   L    + GAG +G+ L
Sbjct  109  FITWMMHLLLIGGSRLFWRVYRRYFIDNA---------VEKKATL----VVGAGQGGSVL  155

Query  176  VAALRMGRVMR--PVAFIDDDSGIADRVISG---LQVYKPKHIQQMIDNTGAQEILLAIP  230
            +  +  ++ MR  PV  +DDD       I+    +Q Y   +I +++ +   + I++AIP
Sbjct  156  IREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGY-VEDIPELVKKFRIKKIIIAIP  214

Query  231  SSNRGRRREILGF--LEGFPLHVRSVPGFMDLASGRVKVDDIQEVDIADLLGRDAVPAQA  288
            + ++ R  EI  +  +EG  L    +P + D+ SG + V++++ V++ DLLGRD+V  + 
Sbjct  215  TLSQKRLNEINKICNIEGVELF--KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDM  272

Query  289  DLLEHCITGQSVLVTGAGGSIGSELCRQILALRPTTLLLFEHSEFNLYSILSELEQRVAR  348
             L+ + +T +++LVTGAGGSIGSE+CRQ+  + P  ++L+ H+E ++YSI  EL +  + 
Sbjct  273  ALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGN  332

Query  349  ESLSIRLLPILGSVRNPDKLLDVMKTWRVDTVYHAAAYKHVPMVEHNIAEGVLNNVIGTL  408
                I ++P+++ V+N  ++L+VM+  +  +VYHAAA KHVP++E N  E++ NN++GT 
Sbjct  333  ---RIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTK  389

Query  409  NTAQAALQAGVANFVLISTDKAVRPTNVMGSTKRLAELTLQALSRELAPVLFGDTSNVSR  468
            N A++A ++ V++FV+ISTDKAV P+NVMG+TKR+AE+ +Q+L+ +              
Sbjct  390  NVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNED--------------  435

Query  469  VNKTRFTMVRFGNVLGSSGSVIPLFHKQIKSGGPLTVTHPKITRYFMTIPEAAQLVIQAG  528
             +KT F  VRFGNVLGS GSVIPLF +QI SGGP+TVTHP +TRYFMTIPEA++LV+QAG
Sbjct  436  NSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAG  495

Query  529  SMGQGGDVFVLDMGEPVKIVELAEKMIHLSGLSVRSEKNLHGDIAIEFTGLRPGEKLYEE  588
            +++QGG+VFVLDMG PVKIV+LA ++I+LSG       + + DI+IEF+G+RPGEKLYEE
Sbjct  496  ALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-------KKEEDIGIEFSGIRPGEKLYEE  548

Query  589  LLIGDNVAATQ  599
            LL  +++ + Q
Sbjct  549  LLNKNEIHPQQ  559

449) XAC2293 in NC_003919


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  291 bits (1089),  Expect = 8e-80, Method: Compositional matrix adjust.
 Identities = 198/462 (43%), Positives = 313/462 (68%), Gaps = 6/462 (1%)

Query  123  LLGTPRLLYRAWKDYQIAHSGDAAQRVLILGAGRAAEGLVRDLRRTGAF--VPVGYLDDA  180
            L+G +RL+ R  + Y I ++ +  +  L++GAG+++  L+R++ R+      PV  +DD 
Sbjct  118  LIGGSRLFWRVYRRYFIDNAVEK-KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDD  176

Query  181  NNLHGAKIQG-LNVLGNLDQaaaiaketaaKLLVIAIPSLDASGMQRVVAICESTGLPFR  239
            +N +   I   ++V G +++ + + K    K ++IAIP+L    ++ +  IC+  G+ + 
Sbjct  177  KNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELF  236

Query  240  MVPKLINVLEGRSLPGELKEVAIEDLLNRKPVTPDWRLIRDWLTNKTVMVTGAGGSIGSE  299
             +P++ +VL G     +LK V +EDLL R PV  D  LI   LTNKT++VTGAGGSIGSE
Sbjct  237  KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSE  296

Query  300  VCRQCARHGARRIVLLEIDELALLTIDSDLRRLFPD-IEVVRVLGDCGDPAVVAHALNTA  358
            +CRQ ++ ++++I+LL  +E ++ +I+ +L + + + IE V V++D  + + + + +N  
Sbjct  297  ICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEF  356

Query  359  TPDAVFHAAAYKQVPLLEEQLREAVRNNVLATENVARACQRARIETFVFISTDKAVEPVN  418
             P AV+HAAA K+VPL+E + +EA+RNN+L+T NVA + + + +  FV ISTDKAV+P N
Sbjct  357  KPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSN  416

Query  419  VLGASKRYAEMICQSLDARDAPTRFITVRFGNVLDSAGSVVPLFREQIRQGGPVTVTHPD  478
            V+GA+KR AEM+ QSL+  ++ T F++VRFGNVL+S GSV+PLF++QI  GGPVTVTHP+
Sbjct  417  VMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPE  476

Query  479  VTRYFMTIPEACQLVIQAAASASHGAIYTLDMGEPVPIRLLAEQMIRLAGKQPGKDVAIL  538
            +TRYFMTIPEA +LV+QA+A A  G ++ LDMG PV I  LA ++IRL+GK+   D++I 
Sbjct  477  MTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKK-EEDIGIE  535

Query  539  YTGLRPGEKLHETLFYSDEAYRPTAHPKILEAGVREFSHEQV  580
            ++G+RPGEKL E L+  +E        KI  + V ++   +V
Sbjct  536  FSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEV  577

450) XAC29_11630 in NC_020800


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  291 bits (1089),  Expect = 8e-80, Method: Compositional matrix adjust.
 Identities = 198/462 (43%), Positives = 313/462 (68%), Gaps = 6/462 (1%)

Query  123  LLGTPRLLYRAWKDYQIAHSGDAAQRVLILGAGRAAEGLVRDLRRTGAF--VPVGYLDDA  180
            L+G +RL+ R  + Y I ++ +  +  L++GAG+++  L+R++ R+      PV  +DD 
Sbjct  118  LIGGSRLFWRVYRRYFIDNAVEK-KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDD  176

Query  181  NNLHGAKIQG-LNVLGNLDQaaaiaketaaKLLVIAIPSLDASGMQRVVAICESTGLPFR  239
            +N +   I   ++V G +++ + + K    K ++IAIP+L    ++ +  IC+  G+ + 
Sbjct  177  KNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELF  236

Query  240  MVPKLINVLEGRSLPGELKEVAIEDLLNRKPVTPDWRLIRDWLTNKTVMVTGAGGSIGSE  299
             +P++ +VL G     +LK V +EDLL R PV  D  LI   LTNKT++VTGAGGSIGSE
Sbjct  237  KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSE  296

Query  300  VCRQCARHGARRIVLLEIDELALLTIDSDLRRLFPD-IEVVRVLGDCGDPAVVAHALNTA  358
            +CRQ ++ ++++I+LL  +E ++ +I+ +L + + + IE V V++D  + + + + +N  
Sbjct  297  ICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEF  356

Query  359  TPDAVFHAAAYKQVPLLEEQLREAVRNNVLATENVARACQRARIETFVFISTDKAVEPVN  418
             P AV+HAAA K+VPL+E + +EA+RNN+L+T NVA + + + +  FV ISTDKAV+P N
Sbjct  357  KPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSN  416

Query  419  VLGASKRYAEMICQSLDARDAPTRFITVRFGNVLDSAGSVVPLFREQIRQGGPVTVTHPD  478
            V+GA+KR AEM+ QSL+  ++ T F++VRFGNVL+S GSV+PLF++QI  GGPVTVTHP+
Sbjct  417  VMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPE  476

Query  479  VTRYFMTIPEACQLVIQAAASASHGAIYTLDMGEPVPIRLLAEQMIRLAGKQPGKDVAIL  538
            +TRYFMTIPEA +LV+QA+A A  G ++ LDMG PV I  LA ++IRL+GK+   D++I 
Sbjct  477  MTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKK-EEDIGIE  535

Query  539  YTGLRPGEKLHETLFYSDEAYRPTAHPKILEAGVREFSHEQV  580
            ++G+RPGEKL E L+  +E        KI  + V ++   +V
Sbjct  536  FSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEV  577

451) XCAW_01958 in NC_020815


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  291 bits (1089),  Expect = 8e-80, Method: Compositional matrix adjust.
 Identities = 198/462 (43%), Positives = 313/462 (68%), Gaps = 6/462 (1%)

Query  123  LLGTPRLLYRAWKDYQIAHSGDAAQRVLILGAGRAAEGLVRDLRRTGAF--VPVGYLDDA  180
            L+G +RL+ R  + Y I ++ +  +  L++GAG+++  L+R++ R+      PV  +DD 
Sbjct  118  LIGGSRLFWRVYRRYFIDNAVEK-KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDD  176

Query  181  NNLHGAKIQG-LNVLGNLDQaaaiaketaaKLLVIAIPSLDASGMQRVVAICESTGLPFR  239
            +N +   I   ++V G +++ + + K    K ++IAIP+L    ++ +  IC+  G+ + 
Sbjct  177  KNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELF  236

Query  240  MVPKLINVLEGRSLPGELKEVAIEDLLNRKPVTPDWRLIRDWLTNKTVMVTGAGGSIGSE  299
             +P++ +VL G     +LK V +EDLL R PV  D  LI   LTNKT++VTGAGGSIGSE
Sbjct  237  KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSE  296

Query  300  VCRQCARHGARRIVLLEIDELALLTIDSDLRRLFPD-IEVVRVLGDCGDPAVVAHALNTA  358
            +CRQ ++ ++++I+LL  +E ++ +I+ +L + + + IE V V++D  + + + + +N  
Sbjct  297  ICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEF  356

Query  359  TPDAVFHAAAYKQVPLLEEQLREAVRNNVLATENVARACQRARIETFVFISTDKAVEPVN  418
             P AV+HAAA K+VPL+E + +EA+RNN+L+T NVA + + + +  FV ISTDKAV+P N
Sbjct  357  KPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSN  416

Query  419  VLGASKRYAEMICQSLDARDAPTRFITVRFGNVLDSAGSVVPLFREQIRQGGPVTVTHPD  478
            V+GA+KR AEM+ QSL+  ++ T F++VRFGNVL+S GSV+PLF++QI  GGPVTVTHP+
Sbjct  417  VMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPE  476

Query  479  VTRYFMTIPEACQLVIQAAASASHGAIYTLDMGEPVPIRLLAEQMIRLAGKQPGKDVAIL  538
            +TRYFMTIPEA +LV+QA+A A  G ++ LDMG PV I  LA ++IRL+GK+   D++I 
Sbjct  477  MTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKK-EEDIGIE  535

Query  539  YTGLRPGEKLHETLFYSDEAYRPTAHPKILEAGVREFSHEQV  580
            ++G+RPGEKL E L+  +E        KI  + V ++   +V
Sbjct  536  FSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEV  577

452) Psesu_1389 in NC_014924


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  290 bits (1087),  Expect = 1e-79, Method: Compositional matrix adjust.
 Identities = 205/506 (41%), Positives = 330/506 (66%), Gaps = 9/506 (1%)

Query  67   GLYRGLWRFASVPDIWNILKAAGLGTVAIVICLAIYNRMDALPRAVLFLYP-LALAAMLG  125
             LY+  W +ASV+++ ++LKA   + V  ++ +++     ++ R  L++   +    ++G
Sbjct  63   NLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLR--LYFITWMMHLLLIG  120

Query  126  VPRLLYRVWKDYNLSRSTATQQRVLIMGAGQAADALVRDLRRSGAY--QPVGFLDDAPHL  183
             +RL+ RV + Y +  +   +   L++GAGQ++  L+R++ RS     QPV  +DD  + 
Sbjct  121  GSRLFWRVYRRYFIDNAVEKKA-TLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNK  179

Query  184  QGSQLHG-MPVLGTLEEAATVAREVGAGMLVIAIPSLDAAGMQRVLGICEHSGLPFRTVP  242
            Q   +   + V G +E+ + + +      ++IAIP+L    ++ +  IC+  G+ +  +P
Sbjct  180  QKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMP  239

Query  243  RLTDVLEGKALPGELKEVAIEDLLHRKPVTPDWGLIRDWLGGRTVMVTGAGGSIGSELCR  302
             + DVL G     +LK V +EDLL R PV  D +LI   L  +T++VTGAGGSIGSE+CR
Sbjct  240  NIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICR  299

Query  303  QCARHGASRIVLLEISELALLTIHAELQDAFPG-VEVVAVLGDCGDPAVTRRALERCAPD  361
            Q ++ ++ +I+LL  +E ++ +IH EL  ++   +E V+V++D  + +     ++   P 
Sbjct  300  QVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPY  359

Query  362  AVFHAAAYKQVPLLEGQLREAVRNNVLATHTVAELCREYRVGTFVLISTDKAVDPANVLG  421
            AV+HAAA K+VPL+E + +EA+RNN+L+T  VAE  +E  V+ FV+ISTDKAV+P+NV+G
Sbjct  360  AVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMG  419

Query  422  VSKRVAEMIAQSMDERVEGTRYVTVRFGNVLDSAGSVVPLFREQIRRGGPVTVTDPEVTR  481
             +KR+AEM+ QS++E    T +V+VRFGNVL+S GSV+PLF++QI  GGPVTVT+PE+TR
Sbjct  420  ATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTR  479

Query  482  YFMTIPEACQLIMQAAASGSHAAIYTLDMGDPVPIRLLAEQMIRLAGKQPGRDIAIVYTG  541
            YFMTIPEA +L++QA+A +  + ++ LDMG PV I  LA ++IRL+GK+   DI+I ++G
Sbjct  480  YFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEE-DIGIEFSG  538

Query  542  LRPGEKLHETLFYPDEHYRPTAHPKI  567
            +RPGEKL E L+  +E        KI
Sbjct  539  IRPGEKLYEELLNKNEIHPQQVYEKI  564

453) B479_06985 in NC_019905


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  290 bits (1086),  Expect = 2e-79, Method: Compositional matrix adjust.
 Identities = 212/490 (44%), Positives = 333/490 (68%), Gaps = 55/490 (11%)

Query  119  FNYWWLSLILVGGLRL---AMRQYFLGDWFTAAVQHVPFASRDDGLPKVAIYGAGTAGNQ  175
            F  W + L+L+GG RL     R+YF+++    AV+      +   L    + GAG +G+ 
Sbjct  109  FITWMMHLLLIGGSRLFWRVYRRYFIDN----AVE------KKATL----VVGAGQGGSV  154

Query  176  LV-AALRMDKV-MRPVAFIDDDS-----SLTDRVIAGLQVYHPEQLQCLIDVTGAQEILL  228
            L+   LR + + M+PV  +DDD      ++T+RV   +Q Y  E++  L+     + I++
Sbjct  155  LIREMLRSQDMRMQPVLAVDDDKNKQKMTITERV--KVQGY-VEDIPELVKKFRIKKIII  211

Query  229  AIPSSTRTRRREILNF--LEGFPLHVRTVPGFMDLASGRVTVDDIREVDIADLLGRDAVP  286
            AIP+ ++ R  EI ++  +EG  L    +P + D+ SG + V++++ V++ DLLGRD+V 
Sbjct  212  AIPTLSQKRLNEINKICNIEGVELF--KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVE  269

Query  287  AQSDLLERCIVEQTVMVTGAGGSIGSELCRQILGQAPKTLLLFEHSEFNLYSILSELEQR  346
             +  L+ R + ++T++VTGAGGSIGSE+CRQ+    P+ ++L+ H+E ++YSI  EL + 
Sbjct  270  LDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKT  329

Query  347  IARESLSVCLVPILGSVRNQPQLFDIMKTWRVDTVYHAAAYKHVPMVEHNIAEGLMNNVI  406
             +     + +VP+++ V+N+ +++++M+  +  +VYHAAA KHVP++E N  E++ NN++
Sbjct  330  YGN---RIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNIL  386

Query  407  GTLHTAQAALQAGVANFVLISTDKAVRPTNVMGSTKRLAEMTLQALSREMAPVLFGDSSN  466
            GT + A++A ++ V++FV+ISTDKAV P+NVMG+TKR+AEM +Q+L+ + +         
Sbjct  387  GTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNS---------  437

Query  467  VSQVNKTRFTMVRFGNVLGSSGSVIPLFHKQIKAGGPLTVTHPKITRYFMTIPEAAQLVI  526
                 KT F  VRFGNVLGS GSVIPLF +QI +GGP+TVTHP +TRYFMTIPEA++LV+
Sbjct  438  -----KTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVL  492

Query  527  QAGSMGKGGDVFVLDMGEPVKIVELAEKMIHLSGFSVRSERNPMGDIAIEFSGLRPGEKL  586
            QAG++++GG+VFVLDMG PVKIV+LA ++I+LSG       +   DI+IEFSG+RPGEKL
Sbjct  493  QAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-------KKEEDIGIEFSGIRPGEKL  545

Query  587  YEELLIGDNV  596
            YEELL  +++
Sbjct  546  YEELLNKNEI  555

454) XCR_2457 in NC_017271


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  290 bits (1084),  Expect = 2e-79, Method: Compositional matrix adjust.
 Identities = 200/475 (43%), Positives = 317/475 (67%), Gaps = 6/475 (1%)

Query  123  LLGTPRLLYRAWKDYQIAHSGDAAQRVLILGAGRAAEGLVRDLRRSGTF--VPVGFLDDA  180
            L+G +RL+ R  + Y I ++ +  +  L++GAG+++  L+R++ RS      PV  +DD 
Sbjct  118  LIGGSRLFWRVYRRYFIDNAVEK-KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDD  176

Query  181  THLHGAKIQG-LNVLGNLDQaaaiaketaaKLLVIAIPSLDASGMQRVVAICESTGLPFR  239
             + +   I   ++V G +++ + + K    K ++IAIP+L    ++ +  IC+  G+ + 
Sbjct  177  KNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELF  236

Query  240  MVPKLINVLEGRSLPGELKEVAIEDLLNRKPVTPDWRLIRDWLTNKTVMVTGAGGSIGSE  299
             +P++ +VL G     +LK V +EDLL R PV  D  LI   LTNKT++VTGAGGSIGSE
Sbjct  237  KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSE  296

Query  300  VCRQCARHGARRIVLLEIDELALLTIDSDLRRLFPD-IEVVRVLGDCGDSAVVAHALRTA  358
            +CRQ ++ ++++I+LL  +E ++ +I+ +L + + + IE V V++D  + + + + +   
Sbjct  297  ICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEF  356

Query  359  TPDAVFHAAAYKQVPLLEEQLREAVRNNVLATENVARACQRARIETFVFISTDKAVEPVN  418
             P AV+HAAA K+VPL+E + +EA+RNN+L+T NVA + + + +  FV ISTDKAV+P N
Sbjct  357  KPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSN  416

Query  419  VLGASKRYAEMICQSLDARDAPTRFITVRFGNVLDSAGSVVPLFREQIRQGGPVTVTHPD  478
            V+GA+KR AEM+ QSL+  ++ T F++VRFGNVL+S GSV+PLF++QI  GGPVTVTHP+
Sbjct  417  VMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPE  476

Query  479  VTRYFMTIPEACQLVVQAAASASHGAIYTLDMGEPVPIRLLAEQMIRLAGKQPGKDIAIL  538
            +TRYFMTIPEA +LV+QA+A A  G ++ LDMG PV I  LA ++IRL+GK+   DI+I 
Sbjct  477  MTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKK-EEDIGIE  535

Query  539  YTGLRPGEKLHETLFYSDEDYRPTAHPKILEAGVREFSHEQVLQLVTRLREAVNR  593
            ++G+RPGEKL E L+  +E        KI  + V ++   +V  +V  L +  ++
Sbjct  536  FSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSK  590

455) xccb100_1991 in NC_010688


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  289 bits (1083),  Expect = 2e-79, Method: Compositional matrix adjust.
 Identities = 200/475 (43%), Positives = 317/475 (67%), Gaps = 6/475 (1%)

Query  123  LLGTPRLLYRAWKDYQIAHSGDAAQRVLILGAGRAAEGLVRDLRRSGTF--VPVGFLDDA  180
            L+G +RL+ R  + Y I ++ +  +  L++GAG+++  L+R++ RS      PV  +DD 
Sbjct  118  LIGGSRLFWRVYRRYFIDNAVEK-KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDD  176

Query  181  THLHGAKIQG-LNVLGNLDQaaaiaketaaKLLVIAIPSLDASGMQRVVAICESTGLPFR  239
             + +   I   ++V G +++ + + K    K ++IAIP+L    ++ +  IC+  G+ + 
Sbjct  177  KNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELF  236

Query  240  MVPKLINVLEGRSLPGELKEVAIEDLLNRKPVTPDWRLIRDWLTNKTVMVTGAGGSIGSE  299
             +P++ +VL G     +LK V +EDLL R PV  D  LI   LTNKT++VTGAGGSIGSE
Sbjct  237  KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSE  296

Query  300  VCRQCARHGARRIVLLEIDELALLTIDSDLRRLFPD-IEVVRVLGDCGDPAVVAHALRTA  358
            +CRQ ++ ++++I+LL  +E ++ +I+ +L + + + IE V V++D  + + + + +   
Sbjct  297  ICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEF  356

Query  359  TPDAVFHAAAYKQVPLLEEQLREAVRNNVLATENVARACQRARIETFVFISTDKAVEPVN  418
             P AV+HAAA K+VPL+E + +EA+RNN+L+T NVA + + + +  FV ISTDKAV+P N
Sbjct  357  KPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSN  416

Query  419  VLGASKRYAEMICQSLDARDAPTRFITVRFGNVLDSAGSVVPLFREQIRQGGPVTVTHPD  478
            V+GA+KR AEM+ QSL+  ++ T F++VRFGNVL+S GSV+PLF++QI  GGPVTVTHP+
Sbjct  417  VMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPE  476

Query  479  VTRYFMTIPEACQLVVQAAASASHGAIYTLDMGEPVPIRLLAEQMIRLAGKQPGKDIAIL  538
            +TRYFMTIPEA +LV+QA+A A  G ++ LDMG PV I  LA ++IRL+GK+   DI+I 
Sbjct  477  MTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKK-EEDIGIE  535

Query  539  YTGLRPGEKLHETLFYSDEDYRPTAHPKILEAGVREFSHEQVLQLVTRLREAVNR  593
            ++G+RPGEKL E L+  +E        KI  + V ++   +V  +V  L +  ++
Sbjct  536  FSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSK  590

456) PBPRA2698 in NC_006370


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  289 bits (1083),  Expect = 2e-79, Method: Compositional matrix adjust.
 Identities = 207/500 (42%), Positives = 333/500 (67%), Gaps = 28/500 (5%)

Query  120  LAVILLGSPRILIRMYFDRHY----RRGKPNVLIYGGGATGRELAYALKQGSEY--HPVA  173
            + ++L+G++R++ R+Y  R+Y       K   L+ G+G  G  L   + ++ +   +PV 
Sbjct  114  MHLLLIGGSRLFWRVY--RRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVL  171

Query  174  FIDDDKHKVGNIIYGLRVYDSTKFEQLNGLYQPVKLLLAINNISK--GERLRLVDKLSHW  231
             +DDDK+K  ++    RV      E++  L +  ++   I  I+     RL  ++K+ + 
Sbjct  172  AVDDDKNK-QKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICN-  229

Query  232  PIGIK--SVPSVEDVALGRANLTEIKDLDIADLLGRDTVIPQENLMRNAIENKSVMITGA  289
              G+    +P++EDV  G  ++ ++K +++ DLLGRD V  +  L+   + NK++++TGA
Sbjct  230  IEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGA  289

Query  290  GGSIGSELCRQIISRNPTTIVLFELNEYNLYNIEKELLQIVRFKNLKIRIIAALGSVQNK  349
            GGSIGSE+CRQ+   +P  I+L+   E ++Y+I++EL +   + N +I +++ ++ VQNK
Sbjct  290  GGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKT--YGN-RIEFVPVIADVQNK  346

Query  350  NRVESIMTSYKVSTIYHAAAYKHVPIVEHNMIEGIRNNVFGTLFTAQAAIKAGVENFVLI  409
             R+  +M  +K  ++YHAAA KHVP++E N  E+IRNN++GT   A++A  + V +FV+I
Sbjct  347  TRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMI  406

Query  410  STDKAVRPTNIMGASKRMAELVLQSLAEDQTKTNFTMVRFGNVLGSSGSVVPLFREQIKQ  469
            STDKAV P+N+MGA+KR+AE+V+QSL ED++KT+F  VRFGNVLGS GSV+PLF++QI  
Sbjct  407  STDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIES  466

Query  470  GGPVTVTHPDIIRYFMLIPEAAQLVIQAGSIGNNGQVFVLDMGEPVKILDLAKRMVHLMG  529
            GGPVTVTHP++ RYFM IPEA++LV+QAG++++ G+VFVLDMG PVKI+DLAK +++L G
Sbjct  467  GGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG  526

Query  530  MSEKCSENTEGDIEIKFTGLRPGEKLYEELLIGENVTGTE-HPKIMTAIEDKLSWAEMEI  588
                   + E DI I F+G+RPGEKLYEELL  +++   +   KI  +  D    +E+++
Sbjct  527  -------KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDL  579

Query  589  VLQNLDHCCHTFDIESLRNI  608
            ++++L    + F  E L +I
Sbjct  580  IVEDL---INNFSKEKLLKI  596

457) PSEBR_a1575 in NC_015379


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  289 bits (1081),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 210/493 (43%), Positives = 330/493 (67%), Gaps = 54/493 (10%)

Query  119  FNYWWLSLIMIGGLRL---MMRQYFLGDWFTAAQHVPFTNRDDGLPKVAIYGAGAAGNQL  175
            F  W + L++IGG RL   + R+YF+++           ++   L    + GAG +G+ L
Sbjct  109  FITWMMHLLLIGGSRLFWRVYRRYFIDNA---------VEKKATL----VVGAGQGGSVL  155

Query  176  VAALRMGRVMR--PVAFIDDDN-----SIADRVIAGLQVYEPRHIQKMIDTTGAQEILLA  228
            +  +  ++ MR  PV  +DDD+     +I++RV   +Q Y   +I  ++     + I++A
Sbjct  156  IREMLRSQDMRMQPVLAVDDDKNKQKMTITERV--KVQGY-VEDIPELVKKFRIKKIIIA  212

Query  229  VPSSSRGRRREILTL--LEGFPLHVRSVPGFMDLASGRVKVDDIQEVDIADLLGRDPVPA  286
            +P+ S+ R  EI  +  +EG  L    +P + D+ SG + V++++ V++ DLLGRDPV  
Sbjct  213  IPTLSQKRLNEINKICNIEGVELF--KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVEL  270

Query  287  QPDLLEHCITDQSVLVTGAGGSIGSELCRQILALKPTTLLLYEHSEFNLYSILSELEPRI  346
            +  L+ + +T++++LVTGAGGSIGSE+CRQ+  + P  ++L  H+E ++YSI  EL    
Sbjct  271  DMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTY  330

Query  347  LRESLSVRLLPILGSVRDQDKLLDVMRTWNVDTVYHAAAYKHVPMVEHNIAEGVLNNVIG  406
               +  + ++P+++ V+++ ++L+VM   +  +VYHAAA KHVP++E N  E++ NN++G
Sbjct  331  ---GNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILG  387

Query  407  TLNTAQAALQAGVSNFVLISTDKAVRPTNVMGSTKRLAELTLQALSRELAPVLFGDKDNV  466
            T N A++A ++ VS+FV+ISTDKAV P+NVMG+TKR+AE+ +Q+L+ +            
Sbjct  388  TKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNED------------  435

Query  467  SRVNKTRFTMVRFGNVLGSSGSVIPLFHKQIKSGGPLTVTHPKITRYFMTIPEAAQLVIQ  526
               +KT F  VRFGNVLGS GSVIPLF +QI SGGP+TVTHP +TRYFMTIPEA++LV+Q
Sbjct  436  --NSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQ  493

Query  527  AGSMGLGGDVFVLDMGEPVRIVELAEKMIHLSGLSVRSEKNPHGDISIEFTGLRPGEKLY  586
            AG+++ GG+VFVLDMG PV+IV+LA ++I+LSG       + + DI+IEF+G+RPGEKLY
Sbjct  494  AGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-------KKEEDIGIEFSGIRPGEKLY  546

Query  587  EELLIGDNVVATQ  599
            EELL  +++ + Q
Sbjct  547  EELLNKNEIHPQQ  559

458) XC_1929 in NC_007086


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  289 bits (1081),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 200/475 (43%), Positives = 317/475 (67%), Gaps = 6/475 (1%)

Query  100  LLGTPRLLYRAWKDYQIAHSGDAAQRVLILGAGRAAEGLVRDLRRSGTF--VPVGFLDDA  157
            L+G +RL+ R  + Y I ++ +  +  L++GAG+++  L+R++ RS      PV  +DD 
Sbjct  118  LIGGSRLFWRVYRRYFIDNAVEK-KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDD  176

Query  158  THLHGAKIQG-LNVLGNLDQaaaiaketaaKLLVIAIPSLDASGMQRVVAICESTGLPFR  216
             + +   I   ++V G +++ + + K    K ++IAIP+L    ++ +  IC+  G+ + 
Sbjct  177  KNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELF  236

Query  217  MVPKLINVLEGRSLPGELKEVAIEDLLNRKPVTPDWRLIRDWLTNKTVMVTGAGGSIGSE  276
             +P++ +VL G     +LK V +EDLL R PV  D  LI   LTNKT++VTGAGGSIGSE
Sbjct  237  KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSE  296

Query  277  VCRQCARHGARRIVLLEIDELALLTIDSDLRRLFPD-IEVVRVLGDCGDPAVVAHALRTA  335
            +CRQ ++ ++++I+LL  +E ++ +I+ +L + + + IE V V++D  + + + + +   
Sbjct  297  ICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEF  356

Query  336  TPDAVFHAAAYKQVPLLEEQLREAVRNNVLATENVARACQRARIETFVFISTDKAVEPVN  395
             P AV+HAAA K+VPL+E + +EA+RNN+L+T NVA + + + +  FV ISTDKAV+P N
Sbjct  357  KPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSN  416

Query  396  VLGASKRYAEMICQSLDARDAPTRFITVRFGNVLDSAGSVVPLFREQIRQGGPVTVTHPD  455
            V+GA+KR AEM+ QSL+  ++ T F++VRFGNVL+S GSV+PLF++QI  GGPVTVTHP+
Sbjct  417  VMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPE  476

Query  456  VTRYFMTIPEACQLVVQAAASASHGAIYTLDMGEPVPIRLLAEQMIRLAGKQPGKDIAIL  515
            +TRYFMTIPEA +LV+QA+A A  G ++ LDMG PV I  LA ++IRL+GK+   DI+I 
Sbjct  477  MTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKK-EEDIGIE  535

Query  516  YTGLRPGEKLHETLFYSDEDYRPTAHPKILEAGVREFSHEQVLQLVTRLREAVNR  570
            ++G+RPGEKL E L+  +E        KI  + V ++   +V  +V  L +  ++
Sbjct  536  FSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSK  590

459) XCC2189 in NC_003902


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  289 bits (1081),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 200/475 (43%), Positives = 317/475 (67%), Gaps = 6/475 (1%)

Query  100  LLGTPRLLYRAWKDYQIAHSGDAAQRVLILGAGRAAEGLVRDLRRSGTF--VPVGFLDDA  157
            L+G +RL+ R  + Y I ++ +  +  L++GAG+++  L+R++ RS      PV  +DD 
Sbjct  118  LIGGSRLFWRVYRRYFIDNAVEK-KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDD  176

Query  158  THLHGAKIQG-LNVLGNLDQaaaiaketaaKLLVIAIPSLDASGMQRVVAICESTGLPFR  216
             + +   I   ++V G +++ + + K    K ++IAIP+L    ++ +  IC+  G+ + 
Sbjct  177  KNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELF  236

Query  217  MVPKLINVLEGRSLPGELKEVAIEDLLNRKPVTPDWRLIRDWLTNKTVMVTGAGGSIGSE  276
             +P++ +VL G     +LK V +EDLL R PV  D  LI   LTNKT++VTGAGGSIGSE
Sbjct  237  KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSE  296

Query  277  VCRQCARHGARRIVLLEIDELALLTIDSDLRRLFPD-IEVVRVLGDCGDPAVVAHALRTA  335
            +CRQ ++ ++++I+LL  +E ++ +I+ +L + + + IE V V++D  + + + + +   
Sbjct  297  ICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEF  356

Query  336  TPDAVFHAAAYKQVPLLEEQLREAVRNNVLATENVARACQRARIETFVFISTDKAVEPVN  395
             P AV+HAAA K+VPL+E + +EA+RNN+L+T NVA + + + +  FV ISTDKAV+P N
Sbjct  357  KPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSN  416

Query  396  VLGASKRYAEMICQSLDARDAPTRFITVRFGNVLDSAGSVVPLFREQIRQGGPVTVTHPD  455
            V+GA+KR AEM+ QSL+  ++ T F++VRFGNVL+S GSV+PLF++QI  GGPVTVTHP+
Sbjct  417  VMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPE  476

Query  456  VTRYFMTIPEACQLVVQAAASASHGAIYTLDMGEPVPIRLLAEQMIRLAGKQPGKDIAIL  515
            +TRYFMTIPEA +LV+QA+A A  G ++ LDMG PV I  LA ++IRL+GK+   DI+I 
Sbjct  477  MTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKK-EEDIGIE  535

Query  516  YTGLRPGEKLHETLFYSDEDYRPTAHPKILEAGVREFSHEQVLQLVTRLREAVNR  570
            ++G+RPGEKL E L+  +E        KI  + V ++   +V  +V  L +  ++
Sbjct  536  FSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSK  590

460) XACM_2301 in NC_016010


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  289 bits (1081),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 198/475 (42%), Positives = 318/475 (67%), Gaps = 6/475 (1%)

Query  123  MLGTPRLLYRAWKDYQIAHSGDAGQRVLILGAGRAAEGLVRDLRRTGAF--VPIGYLDDA  180
            ++G +RL+ R  + Y I ++ +  +  L++GAG+++  L+R++ R+      P+  +DD 
Sbjct  118  LIGGSRLFWRVYRRYFIDNAVEK-KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDD  176

Query  181  SNLHGAKIQG-LNVLGNLDQaaaiaketaaKLLVIAIPSLDASGMQRVVAICESTGLPFR  239
             N +   I   ++V G +++ + + K    K ++IAIP+L    ++ +  IC+  G+ + 
Sbjct  177  KNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELF  236

Query  240  MVPKLINVLEGRSLPGELKEVAIEDLLNRKPVTPDWRLIRDWLTNKTVMVTGAGGSIGSE  299
             +P++ +VL G     +LK V +EDLL R PV  D  LI   LTNKT++VTGAGGSIGSE
Sbjct  237  KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSE  296

Query  300  VCRQCARHGARRIVLLEIDELALLTIDSDLRRLFPD-IEVVRVLGDCGDPAVVAHALNTA  358
            +CRQ ++ ++++I+LL  +E ++ +I+ +L + + + IE V V++D  + + + + +N  
Sbjct  297  ICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEF  356

Query  359  TPDAVFHAAAYKQVPLLEEQLREAVRNNVLATENVARACQRARIETFVFISTDKAVEPVN  418
             P AV+HAAA K+VPL+E + +EA+RNN+L+T NVA + + + +  FV ISTDKAV+P N
Sbjct  357  KPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSN  416

Query  419  VLGASKRYAEMICQSLDARDAPTRFITVRFGNVLDSAGSVVPLFREQIRQGGPVTVTHPD  478
            V+GA+KR AEM+ QSL+  ++ T F++VRFGNVL+S GSV+PLF++QI  GGPVTVTHP+
Sbjct  417  VMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPE  476

Query  479  VTRYFMTIPEACQLVIQAAASASHGAIYTLDMGEPVPIRLLAEQMIRLAGKQPGKDVAIL  538
            +TRYFMTIPEA +LV+QA+A A  G ++ LDMG PV I  LA ++IRL+GK+   D++I 
Sbjct  477  MTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKK-EEDIGIE  535

Query  539  YTGLRPGEKLHETLFYSDEDYRPTAHPKILEAGVREFSHEQVLQLVTRLREAVNR  593
            ++G+RPGEKL E L+  +E        KI  + V ++   +V  +V  L +  ++
Sbjct  536  FSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSK  590

461) XCV2491 in NC_007508


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  289 bits (1081),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 198/475 (42%), Positives = 318/475 (67%), Gaps = 6/475 (1%)

Query  123  MLGTPRLLYRAWKDYQIAHSGDAGQRVLILGAGRAAEGLVRDLRRTGAF--VPIGYLDDA  180
            ++G +RL+ R  + Y I ++ +  +  L++GAG+++  L+R++ R+      P+  +DD 
Sbjct  118  LIGGSRLFWRVYRRYFIDNAVEK-KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDD  176

Query  181  SNLHGAKIQG-LNVLGNLDQaaaiaketaaKLLVIAIPSLDASGMQRVVAICESTGLPFR  239
             N +   I   ++V G +++ + + K    K ++IAIP+L    ++ +  IC+  G+ + 
Sbjct  177  KNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELF  236

Query  240  MVPKLINVLEGRSLPGELKEVAIEDLLNRKPVTPDWRLIRDWLTNKTVMVTGAGGSIGSE  299
             +P++ +VL G     +LK V +EDLL R PV  D  LI   LTNKT++VTGAGGSIGSE
Sbjct  237  KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSE  296

Query  300  VCRQCARHGARRIVLLEIDELALLTIDSDLRRLFPD-IEVVRVLGDCGDPAVVAHALNTA  358
            +CRQ ++ ++++I+LL  +E ++ +I+ +L + + + IE V V++D  + + + + +N  
Sbjct  297  ICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEF  356

Query  359  TPDAVFHAAAYKQVPLLEEQLREAVRNNVLATENVARACQRARIETFVFISTDKAVEPVN  418
             P AV+HAAA K+VPL+E + +EA+RNN+L+T NVA + + + +  FV ISTDKAV+P N
Sbjct  357  KPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSN  416

Query  419  VLGASKRYAEMICQSLDARDAPTRFITVRFGNVLDSAGSVVPLFREQIRQGGPVTVTHPD  478
            V+GA+KR AEM+ QSL+  ++ T F++VRFGNVL+S GSV+PLF++QI  GGPVTVTHP+
Sbjct  417  VMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPE  476

Query  479  VTRYFMTIPEACQLVIQAAASASHGAIYTLDMGEPVPIRLLAEQMIRLAGKQPGKDVAIL  538
            +TRYFMTIPEA +LV+QA+A A  G ++ LDMG PV I  LA ++IRL+GK+   D++I 
Sbjct  477  MTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKK-EEDIGIE  535

Query  539  YTGLRPGEKLHETLFYSDEDYRPTAHPKILEAGVREFSHEQVLQLVTRLREAVNR  593
            ++G+RPGEKL E L+  +E        KI  + V ++   +V  +V  L +  ++
Sbjct  536  FSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSK  590

462) XOO2185 in NC_006834


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 198/475 (42%), Positives = 319/475 (68%), Gaps = 6/475 (1%)

Query  123  MLGTPRLLYRAWKDYQITHSGDAGQRVLILGAGRAAEGLVRDLRRTGAF--VPIGYLDDA  180
            ++G +RL+ R  + Y I ++ +  +  L++GAG+++  L+R++ R+      P+  +DD 
Sbjct  118  LIGGSRLFWRVYRRYFIDNAVEK-KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDD  176

Query  181  NNLHGAKIQG-LNVLGNLDQaaaiaketaaKLLVIAIPSLDASGMQRVVAICESTGLPFR  239
            +N +   I   ++V G +++ + + K    K ++IAIP+L    ++ +  IC+  G+ + 
Sbjct  177  KNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELF  236

Query  240  MVPKLINVLEGRSLPGELKEVAIEDLLNRKPVTPDWRLIRDWLTNKTVMVTGAGGSIGSE  299
             +P++ +VL G     +LK V +EDLL R PV  D  LI   LTNKT++VTGAGGSIGSE
Sbjct  237  KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSE  296

Query  300  VCRQCARHGARRIVLLEIDELALLTIDSDLRRLFPD-IEVVRVLGDCGDPAVVAHALNTA  358
            +CRQ ++ ++++I+LL  +E ++ +I+ +L + + + IE V V++D  + + + + +N  
Sbjct  297  ICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEF  356

Query  359  TPDAVFHAAAYKQVPLLEEQLREAVRNNVLATENVARACQRARIETFVFISTDKAVEPVN  418
             P AV+HAAA K+VPL+E + +EA+RNN+L+T NVA + + + +  FV ISTDKAV+P N
Sbjct  357  KPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSN  416

Query  419  VLGASKRYAEMICQSLDARDAPTRFITVRFGNVLDSAGSVVPLFREQIRQGGPVTVTHPD  478
            V+GA+KR AEM+ QSL+  ++ T F++VRFGNVL+S GSV+PLF++QI  GGPVTVTHP+
Sbjct  417  VMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPE  476

Query  479  VTRYFMTIPEACQLVIQAAASASHGAIYTLDMGEPVPIRLLAEQMIRLAGKQPGKDVAIL  538
            +TRYFMTIPEA +LV+QA+A A  G ++ LDMG PV I  LA ++IRL+GK+   D++I 
Sbjct  477  MTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKK-EEDIGIE  535

Query  539  YTGLRPGEKLHETLFYSDEDYRPTAHSKILEAGVREFSHEQVLQLVTRLREAVNR  593
            ++G+RPGEKL E L+  +E        KI  + V ++   +V  +V  L +  ++
Sbjct  536  FSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSK  590

463) XOO_2055 in NC_007705


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 198/475 (42%), Positives = 319/475 (68%), Gaps = 6/475 (1%)

Query  123  MLGTPRLLYRAWKDYQITHSGDAGQRVLILGAGRAAEGLVRDLRRTGAF--VPIGYLDDA  180
            ++G +RL+ R  + Y I ++ +  +  L++GAG+++  L+R++ R+      P+  +DD 
Sbjct  118  LIGGSRLFWRVYRRYFIDNAVEK-KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDD  176

Query  181  NNLHGAKIQG-LNVLGNLDQaaaiaketaaKLLVIAIPSLDASGMQRVVAICESTGLPFR  239
            +N +   I   ++V G +++ + + K    K ++IAIP+L    ++ +  IC+  G+ + 
Sbjct  177  KNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELF  236

Query  240  MVPKLINVLEGRSLPGELKEVAIEDLLNRKPVTPDWRLIRDWLTNKTVMVTGAGGSIGSE  299
             +P++ +VL G     +LK V +EDLL R PV  D  LI   LTNKT++VTGAGGSIGSE
Sbjct  237  KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSE  296

Query  300  VCRQCARHGARRIVLLEIDELALLTIDSDLRRLFPD-IEVVRVLGDCGDPAVVAHALNTA  358
            +CRQ ++ ++++I+LL  +E ++ +I+ +L + + + IE V V++D  + + + + +N  
Sbjct  297  ICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEF  356

Query  359  TPDAVFHAAAYKQVPLLEEQLREAVRNNVLATENVARACQRARIETFVFISTDKAVEPVN  418
             P AV+HAAA K+VPL+E + +EA+RNN+L+T NVA + + + +  FV ISTDKAV+P N
Sbjct  357  KPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSN  416

Query  419  VLGASKRYAEMICQSLDARDAPTRFITVRFGNVLDSAGSVVPLFREQIRQGGPVTVTHPD  478
            V+GA+KR AEM+ QSL+  ++ T F++VRFGNVL+S GSV+PLF++QI  GGPVTVTHP+
Sbjct  417  VMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPE  476

Query  479  VTRYFMTIPEACQLVIQAAASASHGAIYTLDMGEPVPIRLLAEQMIRLAGKQPGKDVAIL  538
            +TRYFMTIPEA +LV+QA+A A  G ++ LDMG PV I  LA ++IRL+GK+   D++I 
Sbjct  477  MTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKK-EEDIGIE  535

Query  539  YTGLRPGEKLHETLFYSDEDYRPTAHSKILEAGVREFSHEQVLQLVTRLREAVNR  593
            ++G+RPGEKL E L+  +E        KI  + V ++   +V  +V  L +  ++
Sbjct  536  FSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSK  590

464) PXO_00896 in NC_010717


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 198/475 (42%), Positives = 319/475 (68%), Gaps = 6/475 (1%)

Query  123  MLGTPRLLYRAWKDYQITHSGDAGQRVLILGAGRAAEGLVRDLRRTGAF--VPIGYLDDA  180
            ++G +RL+ R  + Y I ++ +  +  L++GAG+++  L+R++ R+      P+  +DD 
Sbjct  118  LIGGSRLFWRVYRRYFIDNAVEK-KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDD  176

Query  181  NNLHGAKIQG-LNVLGNLDQaaaiaketaaKLLVIAIPSLDASGMQRVVAICESTGLPFR  239
            +N +   I   ++V G +++ + + K    K ++IAIP+L    ++ +  IC+  G+ + 
Sbjct  177  KNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELF  236

Query  240  MVPKLINVLEGRSLPGELKEVAIEDLLNRKPVTPDWRLIRDWLTNKTVMVTGAGGSIGSE  299
             +P++ +VL G     +LK V +EDLL R PV  D  LI   LTNKT++VTGAGGSIGSE
Sbjct  237  KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSE  296

Query  300  VCRQCARHGARRIVLLEIDELALLTIDSDLRRLFPD-IEVVRVLGDCGDPAVVAHALNTA  358
            +CRQ ++ ++++I+LL  +E ++ +I+ +L + + + IE V V++D  + + + + +N  
Sbjct  297  ICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEF  356

Query  359  TPDAVFHAAAYKQVPLLEEQLREAVRNNVLATENVARACQRARIETFVFISTDKAVEPVN  418
             P AV+HAAA K+VPL+E + +EA+RNN+L+T NVA + + + +  FV ISTDKAV+P N
Sbjct  357  KPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSN  416

Query  419  VLGASKRYAEMICQSLDARDAPTRFITVRFGNVLDSAGSVVPLFREQIRQGGPVTVTHPD  478
            V+GA+KR AEM+ QSL+  ++ T F++VRFGNVL+S GSV+PLF++QI  GGPVTVTHP+
Sbjct  417  VMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPE  476

Query  479  VTRYFMTIPEACQLVIQAAASASHGAIYTLDMGEPVPIRLLAEQMIRLAGKQPGKDVAIL  538
            +TRYFMTIPEA +LV+QA+A A  G ++ LDMG PV I  LA ++IRL+GK+   D++I 
Sbjct  477  MTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKK-EEDIGIE  535

Query  539  YTGLRPGEKLHETLFYSDEDYRPTAHSKILEAGVREFSHEQVLQLVTRLREAVNR  593
            ++G+RPGEKL E L+  +E        KI  + V ++   +V  +V  L +  ++
Sbjct  536  FSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSK  590

465) PFLU1668 in NC_012660


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  289 bits (1081),  Expect = 4e-79, Method: Compositional matrix adjust.
 Identities = 210/493 (43%), Positives = 330/493 (67%), Gaps = 54/493 (10%)

Query  119  FNYWWLSMIMVGGLRL---AMRQYFLGDWFSASQHVPFTNRDDGLPRVAIYGAGSAGNQL  175
            F  W + ++++GG RL     R+YF+++           ++   L    + GAG +G+ L
Sbjct  109  FITWMMHLLLIGGSRLFWRVYRRYFIDNA---------VEKKATL----VVGAGQGGSVL  155

Query  176  VAALRMGRVMR--PVAFIDDDS-----SITDRVISGLQVYKPKHIQLMIEATGAQEILLA  228
            +  +  ++ MR  PV  +DDD      +IT+RV   +Q Y   +I  ++     + I++A
Sbjct  156  IREMLRSQDMRMQPVLAVDDDKNKQKMTITERV--KVQGY-VEDIPELVKKFRIKKIIIA  212

Query  229  IPSSNRGRRREI--LSFLEGFPLHVRSVPGFMDLASGRVKVDDIQEVDIADLLGRDAVPA  286
            IP+ ++ R  EI  +  +EG  L    +P + D+ SG + V++++ V++ DLLGRD+V  
Sbjct  213  IPTLSQKRLNEINKICNIEGVELF--KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVEL  270

Query  287  QGELLEHCIRGQSVLVTGAGGSIGSELCRQILVLRPTILILYDHSEFNLYSILSELEQRI  346
            +  L+ + +  +++LVTGAGGSIGSE+CRQ+  + P  +IL +H+E ++YSI  EL +  
Sbjct  271  DMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTY  330

Query  347  TRESLPVKLLPILGSVRNPSKLLDVMKTWRVHTVYHAAAYKHVPMVEHNIAEGVLNNVVG  406
                  + ++P+++ V+N +++L+VM+  +  +VYHAAA KHVP++E N  E++ NN++G
Sbjct  331  GN---RIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILG  387

Query  407  TLNTAQAALQSGVANFVLISTDKAVRPTNVMGSTKRLAELTLQALSNELAPVLFGDKSNI  466
            T N A++A ++ V++FV+ISTDKAV P+NVMG+TKR+AE+ +Q+L+++            
Sbjct  388  TKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNED------------  435

Query  467  SRVNKTRFTMVRFGNVLGSSGSVIPLFHKQIKSGGPLTVTHPKITRYFMTIPEAAQLVIQ  526
               +KT F  VRFGNVLGS GSVIPLF +QI SGGP+TVTHP +TRYFMTIPEA++LV+Q
Sbjct  436  --NSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQ  493

Query  527  AGSMGQGGDVFVLDMGEPVKIVELAEKMIHLSGLSVRSDKNPHGDIAIEFTGLRPGEKLY  586
            AG+++QGG+VFVLDMG PVKIV+LA ++I+LSG       + + DI+IEF+G+RPGEKLY
Sbjct  494  AGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-------KKEEDIGIEFSGIRPGEKLY  546

Query  587  EELLIGDNVVATQ  599
            EELL  +++ + Q
Sbjct  547  EELLNKNEIHPQQ  559

466) wbpM in NC_016830


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  289 bits (1081),  Expect = 4e-79, Method: Compositional matrix adjust.
 Identities = 214/525 (41%), Positives = 342/525 (66%), Gaps = 55/525 (10%)

Query  124  FNYWWLSLIMIGGLRL---MMRQYFLGDWFTAAQHVPFTNRDDGLPKVAIYGAGAAGNQL  180
            F  W + L++IGG RL   + R+YF+++           ++   L    + GAG +G+ L
Sbjct  109  FITWMMHLLLIGGSRLFWRVYRRYFIDNA---------VEKKATL----VVGAGQGGSVL  155

Query  181  VAALRMGRVMR--PVAFIDDDN-----SIADRVIAGLQVYAPKHIQKMIDTTGAQEILLA  233
            +  +  ++ MR  PV  +DDD+     +I++RV   +Q Y   +I  ++     + I++A
Sbjct  156  IREMLRSQDMRMQPVLAVDDDKNKQKMTITERV--KVQGYV-EDIPELVKKFRIKKIIIA  212

Query  234  VPSSSRGRRREILTL--LEGFPLHVRSVPGFMDLASGRVKVDDIQEVDIADLLGRDPVPA  291
            +P+ S+ R  EI  +  +EG  L    +P + D+ SG + V++++ V++ DLLGRDPV  
Sbjct  213  IPTLSQKRLNEINKICNIEGVELF--KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVEL  270

Query  292  QPDLLEHCITGQSVLVTGAGGSIGSELCRQILALKPTTLLLYEHSEFNLYSILSELEPRV  351
            +  L+ + +T +++LVTGAGGSIGSE+CRQ+  + P  ++L  H+E ++YSI  EL    
Sbjct  271  DMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTY  330

Query  352  IRESLSVRLLPILGSVRDQDKLLDVMKTWNVDTVYHAAAYKHVPMVEHNIAEGVLNNVIG  411
               +  + ++P+++ V+++ ++L+VM+  +  +VYHAAA KHVP++E N  E++ NN++G
Sbjct  331  ---GNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILG  387

Query  412  TLNTAQAALQAGVSNFVLISTDKAVRPTNVMGSTKRLAELTLQALSRELAPVLFGDKGNV  471
            T N A++A ++ VS+FV+ISTDKAV P+NVMG+TKR+AE+ +Q+L+ +            
Sbjct  388  TKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNED------------  435

Query  472  SRVNKTRFTMVRFGNVLGSSGSVIPLFHKQIKSGGPLTVTHPKITRYFMTIPEAAQLVIQ  531
               +KT F  VRFGNVLGS GSVIPLF +QI SGGP+TVTHP +TRYFMTIPEA++LV+Q
Sbjct  436  --NSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQ  493

Query  532  AGSMGLGGDVFVLDMGEPVKIIELAEKMIHLSGLSVRSEKNPHGDISIEFTGLRPGEKLY  591
            AG+++ GG+VFVLDMG PVKI++LA ++I+LSG       + + DI+IEF+G+RPGEKLY
Sbjct  494  AGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-------KKEEDIGIEFSGIRPGEKLY  546

Query  592  EELLIGDNVVATQ-HPMIMSANEDHLSWDALKNKLTELLAAIEHD  635
            EELL  +++ + Q    I  ++ DH     +   + +L+  +  +
Sbjct  547  EELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNFSKE  591

467) XOC_2688 in NC_017267


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  288 bits (1080),  Expect = 4e-79, Method: Compositional matrix adjust.
 Identities = 196/462 (43%), Positives = 313/462 (68%), Gaps = 6/462 (1%)

Query  123  MLGTPRLLYRAWKDYQITHSGDAGQRVLILGAGRAAEGLVRDLRRTGAF--VPIGYLDDA  180
            ++G +RL+ R  + Y I ++ +  +  L++GAG+++  L+R++ R+      P+  +DD 
Sbjct  118  LIGGSRLFWRVYRRYFIDNAVEK-KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDD  176

Query  181  NNLHGAKIQG-LNVLGNLDQaaaiaketaaKLLVIAIPSLDASGMQRVVAICESTGLPFR  239
            +N +   I   ++V G +++ + + K    K ++IAIP+L    ++ +  IC+  G+ + 
Sbjct  177  KNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELF  236

Query  240  MVPKLINVLEGRSLPGELKEVAIEDLLNRKPVTPDWRLIRDWLTNKTVMVTGAGGSIGSE  299
             +P++ +VL G     +LK V +EDLL R PV  D  LI   LTNKT++VTGAGGSIGSE
Sbjct  237  KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSE  296

Query  300  VCRQCARHGARRIVLLEIDELALLTIDSDLRRLFPD-IEVVRVLGDCGDPAVVAHALNTA  358
            +CRQ ++ ++++I+LL  +E ++ +I+ +L + + + IE V V++D  + + + + +N  
Sbjct  297  ICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEF  356

Query  359  TPDAVFHAAAYKQVPLLEEQLREAVRNNVLATENVARACQRARIETFVFISTDKAVEPVN  418
             P AV+HAAA K+VPL+E + +EA+RNN+L+T NVA + + + +  FV ISTDKAV+P N
Sbjct  357  KPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSN  416

Query  419  VLGASKRYAEMICQSLDARDAPTRFITVRFGNVLDSAGSVVPLFREQIRQGGPVTVTHPD  478
            V+GA+KR AEM+ QSL+  ++ T F++VRFGNVL+S GSV+PLF++QI  GGPVTVTHP+
Sbjct  417  VMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPE  476

Query  479  VTRYFMTIPEACQLVIQAAASASHGAIYTLDMGEPVPIRLLAEQMIRLAGKQPGKDVAIL  538
            +TRYFMTIPEA +LV+QA+A A  G ++ LDMG PV I  LA ++IRL+GK+   D++I 
Sbjct  477  MTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKK-EEDIGIE  535

Query  539  YTGLRPGEKLHETLFYSDEDYRPTAHPKILEAGVREFSHEQV  580
            ++G+RPGEKL E L+  +E        KI  + V ++   +V
Sbjct  536  FSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEV  577

468) TOL_2266 in NC_020888


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  288 bits (1079),  Expect = 5e-79, Method: Compositional matrix adjust.
 Identities = 193/447 (44%), Positives = 309/447 (70%), Gaps = 20/447 (4%)

Query  126  RLFVRGMVAQLIKSNAEPVIIYGAGKQGMSLVHALSSSEFYR--PVAFVDDSRKKQKTSI  183
            R++ R  + + +  +A  V+  GAG+ G  L++ +  S+  R  PV  VDD ++KQK +I
Sbjct  127  RVYRRYFIDNAVEKKATLVV--GAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTI  184

Query  184  QGLKVWPSKQLDDLCDTYGVKKILLAVGKTNMQTRKHLIEELAE----RKLEILITPSFG  239
               +V     ++D+ +     +I   +      ++K+L +E+        +E++  P++ 
Sbjct  185  TE-RVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRL-NEINKICNIEGVELFKMPNIE  242

Query  240  DIISGRAKIEEVREVDIEDLLGRDCVAPNSTLLETSVRDKVVLITGAGGSIGSELCRQVL  299
            D++SG   +++++ V++EDLLGRD V  + +L+   + +K +L+TGAGGSIGSE+CRQV 
Sbjct  243  DVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVS  302

Query  300  MKKPTKLVLLELNEFSLYSIEQELQATNEELKLSVPIVSILGSVQKQNRLETIFKTFNVQ  359
               P K++LL   E S+YSI+QEL  T  +    + +V++++ VQ++ R+  + + F+  
Sbjct  303  KFDPQKIILLGHGENSIYSIHQELSKTYGN---RIEFVPVIADVQNKTRILEVMNEFKPY  359

Query  360  TIYHAAAYKHVPMVECNVVEGVRNNVFGSWYCAEAAITSGVERFILISTDKAVRPTNVMG  419
            ++YHAAA KHVP++E N  E++RNN++G+   AE+A  + V +F++ISTDKAV P+NVMG
Sbjct  360  AVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMG  419

Query  420  ASKRMAELVLQALSTRQTDTLFSMVRFGNVLDSSGSVVPRFRKQIKEGGPITVTHPDIIR  479
            A+KR+AE+V+Q+L+  ++ T F  VRFGNVL+S GSV+P F++QI  GGP+TVTHP++ R
Sbjct  420  ATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTR  479

Query  480  YFMTIPEASQLVIQASAMAKGGDVFVLDMGEPVKIVSLAKKMIHLSGLTERTDINPNGDI  539
            YFMTIPEAS+LV+QA+A+A+GG+VFVLDMG PVKIV LAK++I+LSG       + + DI
Sbjct  480  YFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-------KKEEDI  532

Query  540  EIQFTGLRPGEKLFEELLISEDVEGTE  566
             I+F+G+RPGEKL+EELL  ++++  +
Sbjct  533  GIEFSGIRPGEKLYEELLNKNEIHPQQ  559

469) SELR_17400 in NC_017068


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  288 bits (1078),  Expect = 6e-79, Method: Compositional matrix adjust.
 Identities = 222/535 (42%), Positives = 355/535 (67%), Gaps = 48/535 (8%)

Query  67   YGLRLYHSLWRFASFSELLRIIYGNLATILLMAVGMNFFVGNMP-ISYYIMGAAIQFGLV  125
            Y + LYH  W +AS SEL+ ++ +  ++I++  + +++++++ P +  Y++   +++ L+
Sbjct  60   YVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLI  119

Query  126  LGVRF---AYR--FILLLRVAQQDRRGEGSRVMLIGAGSAGQLIMRDIKRSVRTNEKVCC  180
             G R+    YR  FI        D   E    +++GAG +G +++R++ RS     +   
Sbjct  120  GGSRLFWRVYRRYFI--------DNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVL  171

Query  181  FIDDDPTKWN-RLVDGVPIVGGRDEILASVEKYQIDKIYLTVPSASAAEKRDLLNICKET  239
             +DDD  K +  + + V + G  ++I   V K++I KI +++P+ S     ++ +IC+  
Sbjct  172  AVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIE  231

Query  240  DCELKQLPGLYQLVNGQLSVSAMKKVSVEDLLGREPVKADLSDVFQFIHGKRVLVTGGGG  299
            + EL ++P + ++++G+L V+ +KKV VEDLLGR+PV  D++ + + +  K +LVTG+GG
Sbjct  232  GVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGG  291

Query  300  SIGSELARQIAAHQPEQLILVDIYENNVYNVQLELRDRYPE-LDLVVLIASVRDSRRMFQ  358
            SIGSE+ RQ++  +P+++IL++  EN++Y+++ EL   Y + +++V +IA V++  R+++
Sbjct  292  SIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILE  351

Query  359  IFEEYRPQIVYHAAAHKHVPLMEDSPCEAVKNNAIGTFKTAYAAMVHGCERFVLISTDKA  418
            + +E++P  VYHAAAHKHVPLME +P EA++NN +GT + A +A      +FV+ISTDKA
Sbjct  352  VMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKA  411

Query  419  VNPTNIMGATKRLCEMIIQSFDAKIKAGKANEIPQLFTHEGLENADADGTGKIFENVKTE  478
            VNP+N+MGATKR+ EM+IQS++                                +N KT 
Sbjct  412  VNPSNVMGATKRIAEMVIQSLNE-------------------------------DNSKTS  440

Query  479  FVAVRFGNVLGSNGSVIPIFQKQIAAGHNLTVTHPDIIRYFMTIPEAVSLVMLAGTYAKG  538
            FVAVRFGNVLGS GSVIP+F++QI +G  +TVTHP++ RYFMTIPEA  LV+ AG+ A+G
Sbjct  441  FVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQG  500

Query  539  GEIFVLDMGSPVKIADLAKNLIRLSGLKLGVDIDIDYTGLRPGEKLFEEKLMAEE  593
            GE+FVLDMG PVKI DLAKNLIRLSG K   DI+I+++G+RPGEKL+EE L  +E
Sbjct  501  GEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIGIEFSGIRPGEKLYEELLNKNE  554

470) wbpM in NC_017025


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  288 bits (1077),  Expect = 7e-79, Method: Compositional matrix adjust.
 Identities = 207/474 (44%), Positives = 324/474 (69%), Gaps = 15/474 (3%)

Query  152  IYQVYIEASQVSSYQKVVIYGTDSHAIALANAINAEQPRKYRLVGFVDKYKNKATKTILD  211
            +Y+ Y+  + V     +V+ + ++ ++ + + + +++ R   +++ VD  KNK   TI +
Sbjct  128  VYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLA-VDDDKNKQKMTITE  186

Query  212  -VPILSHDKSIVKILDALNAKNLIIADRNIPNKLQLLIVDQCLEHNIKLLTVPVVADWNN  270
             V + +    I  ++  +  K++IIA   +++K    I   C  + + L+ +P + D  +
Sbjct  187  RVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLS  246

Query  271  QKRITKSIKTFEILDLLDRKPIVLDNTKISNQLTDKIVLITGAAGSIGSEIVRQVLAFKP  330
                 +++K  E+ DLL+R P+ LD + IS +LT+K +L+TGA+GSIGSEI RQV  F P
Sbjct  247  GELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDP  306

Query  331  RKILVLDQAETPLYQLVLELEKVIA--IEIVSLIADVRDKEQMRKIFEKYQPQFVFHAAA  388
            +KI++L+++E ++Y +  EL K  +  IE+V++IADV++K ++  + + ++P  V+HAAA
Sbjct  307  QKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAA  366

Query  389  YKHVPLMEENPTQAIYTNVLGTKNMADLAVKFKVERFVMVSTDKAVNPSNVMGASKRIAE  448
             KHVPLME NP +AI  N+LGTKN+A+ A    V +FVM+STDKAVNPSNVMGA+KRIAE
Sbjct  367  HKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAE  426

Query  449  KYVQSLSAYLEQMKESSTKFITTRFGNVLGSNGSVVPLFTKQINEGGPLTITHPDIIRYF  508
              +QSL+       +S T F++ RFGNVLGS GSV+PLF +QI+ GGP+T+THP++ RYF
Sbjct  427  MVIQSLNE-----DNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYF  481

Query  509  MTIPEACQLVLEAGAMGNGGEIYIFDMGKPVKIIDLAEKMIRLAGYVPNEDIEIKVVGLR  568
            MTIPEA +LVL+AGA+++GGE++++DMGKPVKI+DLA ++IRL+G   +EDI I   G+R
Sbjct  482  MTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIGIEFSGIR  540

Query  569  PGEKLYEELLNDAAKTLPTHHEKIMIAKDELEDYISISTE--IDELI-EIAKDK  619
            PGEKLYEELLN          EKI  +K  +++YI    +  +++LI +++K+K
Sbjct  541  PGEKLYEELLNKNEIHPQQVYEKIYRGK--VDHYIKTEVDLIVEDLINNFSKEK  592

471) Dde_0360 in NC_007519


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  288 bits (1077),  Expect = 8e-79, Method: Compositional matrix adjust.
 Identities = 209/522 (41%), Positives = 347/522 (67%), Gaps = 27/522 (5%)

Query  62   VFSMYRGMWRYTSLRDSILLLRAASVQSLLVIAGVAYLTGFAGYSRAVFGMDFLLTFLFT  121
            VF++Y+  W Y+S+ + + +L+A +   ++ +  V+ L + + + R  F +  ++ +L+ 
Sbjct  61   VFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYF-ITWMMHLLLI  119

Query  122  GGARLGIRILFSLRETGRFWLP-----MTGRTARKGARRVIIIGAGRAGERLVSELNRDV  176
            GG+RL             FW       +     +K++   +++GAG++G  L+ E+ R  
Sbjct  120  GGSRL-------------FWRVYRRYFIDNAVEKKAT---LVVGAGQGGSVLIREMLRSQ  163

Query  177  SLGYFPVGFVDNNPALKGRTIHGR-PVMGTLDRLPEAIVSTRAEELLIALTEASSEQVRH  235
             +   PV  VD++   +  TI  R  V G ++ +PE +   R   ++IA+   S  ++ +
Sbjct  164  DMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNE  223

Query  236  IVQACSETGLPCKILPPMNEILDFKRGIKNMREVNYLDLLGRSPVELDTGAISRYLQGKC  295
            I + C+  G+    +P ++++L     ++N++ V+  DLLGR PVELD + ISR L  K 
Sbjct  224  INKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKT  283

Query  296  ILVTGCGGSIGSELVRQIIRYAPARLVLVDASEFNLYKIQMDLEHVHGFH-DYVAILGNI  354
            ILVTG GGSIGSE+ RQ+ ++ P +++L++ +E ++Y I+ +L    G + ++V++++++
Sbjct  284  ILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADV  343

Query  355  RDAHLMRTTFAAHKPEAVFHAAAYKHVPMLERNPWQAVQNNILGTQTLMQAAHDAGVQRF  414
            ++   +       KP AV+HAAA KHVP++E NP +A++NNILGT+ + ++A ++ V +F
Sbjct  344  QNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKF  403

Query  415  VVVSTDKAVRPTNVMGASKRVTELLMRRFSGSSTR--FMAVRFgnvvgssgsvvPLFLDQ  472
            V++STDKAV P+NVMGA+KR++E++++ ++  +++  F+AVRFGNV+GS GSV+PLF +Q
Sbjct  404  VMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQ  463

Query  473  IARGGPVTVTHPEVTRYFMSIAEAAQLILQAGTMAQGGEIFVLDMGVPVKIADMAKDLIR  532
            I  GGPVTVTHPE+TRYFM+I+EA++L+LQAG++AQGGE+FVLDMG PVKI D+AK+LIR
Sbjct  464  IESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIR  523

Query  533  LAGLEPEVDIPIVFTGLREGEKLYEELITADEGVVRTEHDKI  574
            L+G   E DI I F+G+R GEKLYEEL+  +E   +   +KI
Sbjct  524  LSG-KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKI  564

472) Pmob_1801 in NC_010003


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  286 bits (1072),  Expect = 2e-78, Method: Compositional matrix adjust.
 Identities = 202/457 (45%), Positives = 308/457 (68%), Gaps = 18/457 (3%)

Query  125  RIYWFSRHSRNYKK----RLNGIKNILIIGAGDAGTELLGEYERHPEE--GSVVGFLDDD  178
            R++W     R Y++         K  L++GAG++G+ L+ E  R  +    +V++ +DDD
Sbjct  123  RLFW-----RVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLA-VDDD  176

Query  179  PEKIGRNIRG-YPVLGKINQVMDFVEKYNVEEVIIAIPSASSDQIKKIIDYVDTSKVRLK  237
             +K    I     V G ++++ ++V K+ +  +IIAIP+ S  +++ I    +   V L 
Sbjct  177  KNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELF  236

Query  238  TLPGILEILDNKLSLGFLREVDISDLLGRKEVSVDLKEIKDYIKGKKILVTGAGGSIGSE  297
             +P I ++L   L +  L+ V++ DLLGR  V +D+  I   +  K ILVTGAGGSIGSE
Sbjct  237  KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSE  296

Query  298  ICRQVLPMGPKALFLLGKGENSIFEISNELKDKFSD--AFIEEIIADVSDENRMRYLFSK  355
            ICRQV   +P+ ++LLG GENSI+ I +EL   +++   F+  +IADV +  R+  + + 
Sbjct  297  ICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVP-VIADVQNKTRILEVMNE  355

Query  356  YRFDVVFHAAAHKHVPLMQKNPTEAFRVNTIGTYTVAKLSGEYNVERFVFISTDKAIKPT  415
            ++   V+HAAAHKHVPLM+ NP EA+R N +GT  VA  + E +V +FV ISTDKA++P+
Sbjct  356  FKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPS  415

Query  416  SIMGASKRLGEIIVKTMS-NFYQTKYGIVRFGNVLGSRGSVIPIFKEQIQKGGPVTVTHP  474
            ++MGA+KR++E+++++++ +  +T +  VRFGNVLGSRGSVIP+FK+QI+ GGPVTVTHP
Sbjct  416  NVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHP  475

Query  475  NMKRYFMTIPEAVSLVLQCGQFAQKAEIFVLEMGAPVNIDRLARDLIRLSGYIPDQDIKI  534
            +M RYFMTIPEA  LVLQ G +AQ +E+FVL+MG PV+I  LA++LIRLSG   ++DI I
Sbjct  476  EMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIGI  534

Query  535  VYTGIRPGEKLYEEIFLEDEDYEKTRNRRIFISKSNN  571
             ++GIRPGEKLYEE++  +E   +    +I+ +K ++
Sbjct  535  EFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDH  571

473) Sfum_3360 in NC_008554


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  286 bits (1072),  Expect = 2e-78, Method: Compositional matrix adjust.
 Identities = 206/514 (41%), Positives = 355/514 (70%), Gaps = 26/514 (5%)

Query  61   CLFGLYRGMWRFSGLEDFWRLGQASVLSMLLIVATVAYTDNFTGYPRSVFLLDCVLTFLL  120
             +F LY+  W ++++ ++  + +A   S+++ +  V+   + + + R ++++  ++ +LL
Sbjct  60   YVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLR-LYFITWMMHLLL  118

Query  121  TGGLRV---CIRSYYIARNTPRGIRAFSLPRLNYVEKERKQILIIGAGGSGEKMLREIFD  177
             GG R+     R Y+I                     E+K  L++GAG +G  ++RE++ 
Sbjct  119  IGGSRLFWRVYRRYFIDNAV-----------------EKKATLVVGAGQGGSVLIREMLR  161

Query  178  NPQLHYHVVGFLDDDPGKRGRTVHG-VRVLGPADHLSRVLEQNNIEQVFISVPSATGAQM  236
            + +++ + V  +DDD  K+  T+   V+V G  ++++ ++ +  I +++I++P+ +  ++
Sbjct  162  SQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRL  221

Query  237  RRLIDICKGCGISYKTLPAIGSIMNGNVSIKSLRDVNYEDLLRRPPVSLETDAISGYLTN  296
              +  IC+  G+    +P I  +++G++ +++L+ V+ EDLL R PV L+   IS  LTN
Sbjct  222  NEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTN  281

Query  297  RTVMVTGAGGSIGSELCRQVAQFKPQLLILVDASESNLFHMQMELQHEREFR-NYQCILG  355
            +T++VTGAGGSIGSE+CRQV++F PQ +IL++ +E++++ ++ EL      R ++  +++
Sbjct  282  KTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIA  341

Query  356  QVQQRLLMESVFRKYRPDVVFHAAAYKHVPMLERNPWEAVFNNVRGSQVMMKLSKDYGVK  415
            +VQ++  +  V   ++P  V+HAAA KHVP++E NP EA+ NN+ G++ +   +K+  V 
Sbjct  342  DVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVS  401

Query  416  RFVLVSTDKAVRPTNVMGTSKRLTELILQSFQGNGTK--YMAVRFGNVVGSSGSVIPLFR  473
            +FV++STDKAV P+NVMG++KR++E+++QS++ + +K  ++AVRFGNV+GS GSVIPLF+
Sbjct  402  KFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFK  461

Query  474  RQIEQGGPVTVTHPEVTRYFMTIPeaaqlilqagalgeggeiFILEMGTPVKIADMAQDL  533
             QIE GGPVTVTHPE+TRYFMTIPEA++L+LQAGAL++GGE+F+L+MG PVKI D+A++L
Sbjct  462  NQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNL  521

Query  534  IRLSGKQPGRDIEIQFTGLREGEKLYEELITLDE  567
            IRLSGK+   DI I+F+G+R GEKLYEEL+  +E
Sbjct  522  IRLSGKKEE-DIGIEFSGIRPGEKLYEELLNKNE  554

474) Tmz1t_1131 in NC_011662


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  286 bits (1069),  Expect = 3e-78, Method: Compositional matrix adjust.
 Identities = 198/483 (41%), Positives = 323/483 (67%), Gaps = 31/483 (6%)

Query  158  VEGAQERPRVVVYGAGSAGNQLVSALRAGRELR---PMAFVDDDASLWGTVVDGLPV--Y  212
            ++ A E+   +V GAG +G+ L+  +  ++++R    +A  DD      T+ + + V  Y
Sbjct  134  IDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGY  193

Query  213  APEDMGRMLAETGATQVLLAVPSASRQRRREILDLLDPYPVHVRTLPGFKSLVDGKVKVQ  272
              ED+  ++      ++++A+P+ S++R  EI  + +   V++  +P +  ++ G + V+
Sbjct  194  V-EDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVN  252

Query  273  DLQEVDIADLLGREPVEPDEALFERCILDQVVMVTGAGGSIGSELCRQIVTCRPRGLVLF  332
            +L+ V++ DLLGR+PVE D AL+ R + ++ ++VTGAGGSIGSE+CRQ+    P+ ++L+
Sbjct  253  NLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILL  312

Query  333  EHSEYALYSIHTELERYIKERGLVIELVGMLGSVRNGGRMFDALTAWKVDTVYHAAAYKH  392
             H+E ++YSIH EL +   +R   IE+V +++ V+N  R+++ +   K  +VYHAAA KH
Sbjct  313  GHGENSIYSIHQELSKTYGNR---IEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKH  369

Query  393  VPIVEHNIAQGFFNNTMGTLHAAQAALRAGVRNFVLISTDKAVRPTNVMGATKRLAELVL  452
            VP++E N  +++ NN +GT + A++A  + V +FV+ISTDKAV P+NVMGATKR+AE+V+
Sbjct  370  VPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVI  429

Query  453  QGLSVEPAPVLFREDVEGAVPNRTRFTMVRFGNVLGSSGSVIPLFREQIRRGGPITVTDP  512
            Q+L+ + +              +T F  VRFGNVLGS GSVIPLF++QI  GGP+TVT+P
Sbjct  430  QSLNEDNS--------------KTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHP  475

Query  513  RITRYFMTIPEAAQLVIQAGSMGEGGDVFVLDMGQPVKIVDLAERIVHLSGLSVKSKSHP  572
             +TRYFMTIPEA++LV+QAG++++GG+VFVLDMG+PVKIVDLA  +++LSG         
Sbjct  476  EMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-------KK  528

Query  573  QGDIEIVFTGLRPGEKLYEELLIGDNVLP-TAHSMIMRANEERLSWRQLTLGLDAIIQAI  631
            + DI I F+G+RPGEKLYEELL  +++ P      I R++ ++    ++ L ++ +I+ +
Sbjct  529  EEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINNF  588

Query  632  KNG  634
             + 
Sbjct  589  SKE  591

475) PSEEN1506 in NC_008027


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  286 bits (1069),  Expect = 4e-78, Method: Compositional matrix adjust.
 Identities = 210/511 (42%), Positives = 337/511 (66%), Gaps = 56/511 (10%)

Query  119  FNYWWLSLVMVGGLRL---AMRQYFLGDWFTAAQHMPFTSRDNGLPKVAIYGAGSAGNQL  175
            F  W + L+++GG RL     R+YF+++            +   L    + GAG +G+ L
Sbjct  109  FITWMMHLLLIGGSRLFWRVYRRYFIDNA---------VEKKATL----VVGAGQGGSVL  155

Query  176  VAALRLGKAMR--PVAFIDDDDNIANRVISG---LQVYKPKHLQQMIDHTGAEEVLLAIP  230
            +  +  ++ MR  PV  +DDD N  +  I+    +Q Y   ++ +++       +++AIP
Sbjct  156  IREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGY-VEDIPELVKKFRIKKIIIAIP  214

Query  231  SVSRGRRREI--LGFLEGFPLHVRSVPGFMDLASGRVKVDDIQEVDIADLLGRDAVPAQE  288
            ++S+ R  EI  +  +EG  L    +P + D+ SG + V++++ V++ DLLGRD+V  + 
Sbjct  215  TLSQKRLNEINKICNIEGVELF--KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDM  272

Query  289  GLLQRCNTDLVVMVTGAGGSIGSELCRQILSLKPRTLLLFEHSEFNLYSILSELEQRVAR  348
            +L+ R  T+  ++VTGAGGSIGSE+CRQ+  + P+ ++L+ H+E ++YSI  EL +    
Sbjct  273  ALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSK----  328

Query  349  ESLPTRV--LPILGSVRNQSQLVDIMRTWRVDTVYHAAAYKHVPMVEHNIAEGVLNNVMG  406
             +   R+  +P+++ V+N+++++++M   +  +VYHAAA KHVP++E N  E++ NN++G
Sbjct  329  -TYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILG  387

Query  407  TLYTAQAALQAGVANFVLISTDKAVRPTNVMGSTKRLAEMTLQALSREVAPVLFGDSGNV  466
            T   A++A ++ V++FV+ISTDKAV P+NVMG+TKR+AEM +Q+L+ + +          
Sbjct  388  TKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNS----------  437

Query  467  SQVNKTRFTMVRFGNVLGSSGSVIPLFHKQIKAGGPLTVTHPKITRYFMTIPEAALLVIQ  526
                KT F  VRFGNVLGS GSVIPLF +QI +GGP+TVTHP +TRYFMTIPEA+ LV+Q
Sbjct  438  ----KTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQ  493

Query  527  AGSMGQGGDVFVLDMGEPVRIVELAEKMIHLSGLSIRSERNPHGDISIEFSGLRPGEKLY  586
            AG+++QGG+VFVLDMG PV+IV+LA ++I+LSG       + + DI+IEFSG+RPGEKLY
Sbjct  494  AGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-------KKEEDIGIEFSGIRPGEKLY  546

Query  587  EELLIGDNVAATQ-HPMIMRAN-EDYLSWDV  615
            EELL  +++ + Q    I R++ ++Y+  +V
Sbjct  547  EELLNKNEIHPQQVYEKIYRGKVDHYIKTEV  577

476) Psyr_3636 in NC_007005


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  285 bits (1068),  Expect = 4e-78, Method: Compositional matrix adjust.
 Identities = 214/489 (44%), Positives = 329/489 (68%), Gaps = 54/489 (11%)

Query  119  FNYWWLSMVMIGGLRL---AMRQYFLGDWFAAAQHVPFAKSDNGLQKVA--IYGAGAAGN  173
            F  W + +++IGG RL     R+YF+               DN+++K A  + GAG +G+
Sbjct  109  FITWMMHLLLIGGSRLFWRVYRRYFI---------------DNAVEKKATLVVGAGQGGS  153

Query  174  QLV-AALRMGRL-MHPVAFIDDDESISNRVISG---LQVYKPRNIQRMIDSTGAQEILLA  228
             L+   LR   + M+PV  +DDD +  +  I+    +Q Y   +I  ++     + I++A
Sbjct  154  VLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGY-VEDIPELVKKFRIKKIIIA  212

Query  229  IPSSSRGRRREILGF--LEGFPLHVRSVPGFMDLAAGRVKVDDLQEVDIADLLGRDAVPA  286
            IP+ S+ R  EI  +  +EG  L    +P + D+ +G + V++L+ V++ DLLGRD+V  
Sbjct  213  IPTLSQKRLNEINKICNIEGVELF--KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVEL  270

Query  287  RDNLLEHCIKGKTVLVTGAGGSIGSELCRQIlllkptqllllDHSEFNLYSILSELEQRS  346
               L+ + +  KT+LVTGAGGSIGSE+CRQ+  + P +++LL+H+E ++YSI  EL +  
Sbjct  271  DMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTY  330

Query  347  ARESLSVKLLPILGSVRNHPKLLSIMKTWKVDTVYHAAAYKHVPMVEHNIAEGVINNVVG  406
            +     + ++P+++ V+N  ++L +M+  K  +VYHAAA KHVP++E N  E++ NN++G
Sbjct  331  GN---RIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILG  387

Query  407  TLNTAQAALQAGVSNFVLISTDKAVRPTNVMGSTKRLAELILQALSRETAPVIFGDKANV  466
            T N A++A ++ VS+FV+ISTDKAV P+NVMG+TKR+AE+++Q+L+ + +          
Sbjct  388  TKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNS----------  437

Query  467  YQVNKTRFTMVRFGNVLGSSGSVIPLFHKQIQSGGPLTVTHPKITRYFMTIPEAAQLVIQ  526
                KT F  VRFGNVLGS GSVIPLF +QI+SGGP+TVTHP +TRYFMTIPEA++LV+Q
Sbjct  438  ----KTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQ  493

Query  527  AGSMGHGGDVFVLDMGEPVKIVELAEKMIHLSGLAIRSEKNPHGDISIEFTGLRPGEKLY  586
            AG++++GG+VFVLDMG PVKIV+LA ++I+LSG       + + DI+IEF+G+RPGEKLY
Sbjct  494  AGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-------KKEEDIGIEFSGIRPGEKLY  546

Query  587  EELLIGDNV  595
            EELL  +++
Sbjct  547  EELLNKNEI  555

477) ABBFA_003450 in NC_011595


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  285 bits (1066),  Expect = 5e-78, Method: Compositional matrix adjust.
 Identities = 194/442 (44%), Positives = 309/442 (70%), Gaps = 19/442 (4%)

Query  126  WCSRAFIRFIVKATLQTGEERKRIAIYGAGDAGQQIAAVLYRSGNH--LPVFFIDDNTSL  183
            W  R + R+++  ++    E+K   + GAG++G  +   + RS +    PV+ +DD+ + 
Sbjct  126  W--RVYRRYFIDNAV----EKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNK  179

Query  184  QDHMVGG-LKVLS-LEKALQRFEKYKTDEILLALPSVGRVRKSEIIQQLEPAHLKITELP  241
            Q   +   +KV + +E   +   K++   I++A+P++++ R +EI +  +   + +  +P
Sbjct  180  QKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMP  239

Query  242  GLTQLVDGELKVADIREVDIIDLLGRDPVPPVDHLLAKNIHNKIVMVTGAGGSIGSELCR  301
             + +++ GEL V +++ V++ DLLGRDPV     L+++++ NK ++VTGAGGSIGSE+CR
Sbjct  240  NIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICR  299

Query  302  QIVKNQPKMLIIYEITEFALYSIDKELR--LAAQCEIVPILGTVQDQQKLERIIEQYSVQ  359
            Q+ K +P+ +I+    E ++YSI++EL    + + E+VP+++ VQ++ ++  +++++   
Sbjct  300  QVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPY  359

Query  360  TVYHAAAYKHVPLVECNPIAGLKNNAIGTANSLNAAVKKGVETFVLISTDKAVRPTNVMG  419
            +VYHAAA KHVPL+E NP  +++NN +GT N  ++A    V  FV+ISTDKAV P+NVMG
Sbjct  360  AVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMG  419

Query  420  ASKRMAELYCQAMAEAQKQTQISIVRFGNVLGSSGSVVPLFKQQIAKGGPITVTHPEVTR  479
            A+KR+AE+  Q++ E + +T +  VRFGNVLGS GSV+PLFK+QI  GGP+TVTHPE+TR
Sbjct  420  ATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTR  479

Query  480  YFMTIPEASQLVIQAGALGRGGDVFLLDMGEPVRIQDLARQMISLSGLTVREQGSMQGDI  539
            YFMTIPEAS+LV+QAGAL++GG+VF+LDMG PV+I DLA+++I LS       G  + DI
Sbjct  480  YFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLS-------GKKEEDI  532

Query  540  EIHYSGLRPGEKLYEELLIDQE  561
             I++SG+RPGEKLYEELL  +E
Sbjct  533  GIEFSGIRPGEKLYEELLNKNE  554

478) ABAYE3804 in NC_010410


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  285 bits (1066),  Expect = 5e-78, Method: Compositional matrix adjust.
 Identities = 194/442 (44%), Positives = 309/442 (70%), Gaps = 19/442 (4%)

Query  126  WCSRAFIRFIVKATLQTGEERKRIAIYGAGDAGQQIAAVLYRSGNH--LPVFFIDDNTSL  183
            W  R + R+++  ++    E+K   + GAG++G  +   + RS +    PV+ +DD+ + 
Sbjct  126  W--RVYRRYFIDNAV----EKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNK  179

Query  184  QDHMVGG-LKVLS-LEKALQRFEKYKTDEILLALPSVGRVRKSEIIQQLEPAHLKITELP  241
            Q   +   +KV + +E   +   K++   I++A+P++++ R +EI +  +   + +  +P
Sbjct  180  QKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMP  239

Query  242  GLTQLVDGELKVADIREVDIIDLLGRDPVPPVDHLLAKNIHNKIVMVTGAGGSIGSELCR  301
             + +++ GEL V +++ V++ DLLGRDPV     L+++++ NK ++VTGAGGSIGSE+CR
Sbjct  240  NIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICR  299

Query  302  QIVKNQPKMLIIYEITEFALYSIDKELR--LAAQCEIVPILGTVQDQQKLERIIEQYSVQ  359
            Q+ K +P+ +I+    E ++YSI++EL    + + E+VP+++ VQ++ ++  +++++   
Sbjct  300  QVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPY  359

Query  360  TVYHAAAYKHVPLVECNPIAGLKNNAIGTANSLNAAVKKGVETFVLISTDKAVRPTNVMG  419
            +VYHAAA KHVPL+E NP  +++NN +GT N  ++A    V  FV+ISTDKAV P+NVMG
Sbjct  360  AVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMG  419

Query  420  ASKRMAELYCQAMAEAQKQTQISIVRFGNVLGSSGSVVPLFKQQIAKGGPITVTHPEVTR  479
            A+KR+AE+  Q++ E + +T +  VRFGNVLGS GSV+PLFK+QI  GGP+TVTHPE+TR
Sbjct  420  ATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTR  479

Query  480  YFMTIPEASQLVIQAGALGRGGDVFLLDMGEPVRIQDLARQMISLSGLTVREQGSMQGDI  539
            YFMTIPEAS+LV+QAGAL++GG+VF+LDMG PV+I DLA+++I LS       G  + DI
Sbjct  480  YFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLS-------GKKEEDI  532

Query  540  EIHYSGLRPGEKLYEELLIDQE  561
             I++SG+RPGEKLYEELL  +E
Sbjct  533  GIEFSGIRPGEKLYEELLNKNE  554

479) wbpM in NC_008260


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  285 bits (1067),  Expect = 5e-78, Method: Compositional matrix adjust.
 Identities = 214/507 (43%), Positives = 339/507 (67%), Gaps = 37/507 (7%)

Query  94   VFIIFWALLVLYLGGSRF---MMRRFLYNVLGKHTLREavavfgaggagaQLVSGLLSST  150
            +++I W + +L +GGSR+   + RR++   +++   + A  V GAG +G+ L+  +L S 
Sbjct  107  LYFITWMMHLLLIGGSRLFWRVYRRYF---IDNAVEKKATLVVGAGQGGSVLIREMLRSQ  163

Query  151  ELR--PLMIVDDAPGKQGMLLCGVPVVGRRALEKAVERGAIRTVLLALPSESRATRMAVV  208
            ++R  P++ VDD   KQ M      +  R  ++  VE   I  ++  +        ++ +
Sbjct  164  DMRMQPVLAVDDDKNKQKM-----TITERVKVQGYVE--DIPELVKKFRIKKIIIAIPTL  216

Query  209  --RWLETLN-------VHVQTVPSFADIASGKARLEEVKDVSIEDLLGRDPVPPRADLLS  259
              ++L+ +N       V++  +P++ D+ SG   ++++K V +EDLLGRDPV     L+S
Sbjct  217  SQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALIS  276

Query  260  RCISGKHVLVTGAAGSIGSELCRQILKLNPSRLVLLDQSEFGLYAIEKELRATADSLGKS  319
            R ++ K +LVTGA+GSIGSE+CRQ+ K++P +++LL+++E ++Y+I++EL   + + G+ 
Sbjct  277  RELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQEL---SKTYGNR  333

Query  320  VEIEAVLGSVVNRGLMERLCSDQRVDTVYHAAAYKHVPIVEANPTAGVRNNIlgtleaal  379
            +E+ +V++ V N+  +  + ++ +  +VYHAAA KHVP++E NP  ++RNNILGT + A 
Sbjct  334  IEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAE  393

Query  380  gaeaaHVKHFILVSTDKAVRPTNVMGATKRFAELVLQAIAARGSDTVFSMVRFGNVLGSS  439
            +A  ++V  F+++STDKAV P+NVMGATKR+AE+V+Q++    S T F  VRFGNVLGS 
Sbjct  394  SAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSR  453

Query  440  GSVVPLFRDQIRKGGPVTVTHPDVIRYFMTIPEASQLVIQAGAMAQGGEVFVLDMGEPVR  499
            GSV+PLF++QI  GGPVTVTHP++ RYFMTIPEAS+LV+QAGA+AQGGEVFVLDMG PV+
Sbjct  454  GSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVK  513

Query  500  IVDLARTMVHLMGMTVRDEKMPEGDIEIAFSGLRPGEKLYEELLIGECSIRTEH--EMIM  557
            IVDLA+ +++L G         E DI I FSG+RPGEKLYEELL     I+ ++  E I 
Sbjct  514  IVDLAKNLIRLSGKK-------EEDIGIEFSGIRPGEKLYEELL-NKNEIHPQQVYEKIY  565

Query  558  QAHEEKLSWDEVHFALEAFRKALSRAD  584
            ++  +     EV++ +E + + +S+  
Sbjct  566  RGKVDHYIKTEVDLIVEDLINNFSKEK  592

480) PPUBIRD1_3828 in NC_017530


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  285 bits (1066),  Expect = 5e-78, Method: Compositional matrix adjust.
 Identities = 204/488 (42%), Positives = 327/488 (68%), Gaps = 49/488 (10%)

Query  116  FNYWWLSLIMIGGLRL---AMRQYFLGDWFAAAVQHVPFASNGRGDGLPRVAIYgaggag  172
            F  W + L++IGG RL     R+YF+++        V  A++G G  L R  +       
Sbjct  109  FITWMMHLLLIGGSRLFWRVYRRYFIDNAVEKKATLVVGAGQG-GSVLIREML-------  160

Query  173  nqlaaalRSDKALRPVAFIDDDP-----SITDRVIAGLQVYRPDQLQDMIDATGAQEILL  227
                     D  ++PV  +DDD      +IT+RV   +Q Y  +++ +++     + I++
Sbjct  161  ------RSQDMRMQPVLAVDDDKNKQKMTITERV--KVQGY-VEDIPELVKKFRIKKIII  211

Query  228  AIPSSTRTRRREILNFLEGYPLHVRSIPSFLDLASGKVKVDDIQEVDIADLLGRDAVPAQ  287
            AIP+ ++ R  EI ++ +   +++  +P++ D+ SG + V++++ V++ DLLGRD+V  +
Sbjct  212  AIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELD  271

Query  288  ADLLERCIVDQIVLVTGAGGSIGSELCRQILGQGPKTLLLFDHSEFNLYSILSELEQRVA  347
              L+ R + ++ +LVTGAGGSIGSE+CRQ+   +P+ ++L++H+E ++YSI  EL +  +
Sbjct  272  MALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYG  331

Query  348  RESLTVSLVPILGSVRNQSQLLDIMRTWHVDTVYHAAAYKHVPMVEHNITEGLMNNVIGT  407
                 + +VP+++ V+N++++L++M      +VYHAAA KHVP++E N  E++ NN++GT
Sbjct  332  N---RIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGT  388

Query  408  LHTAQAALQAGVANFVLISTDKAVRPTNVMGSTKRLAEMTLQALSREVAPVLFGDSSNVS  467
             + A++A ++ V++FV+ISTDKAV P+NVMG+TKR+AEM +Q+L+ + +           
Sbjct  389  KNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNS-----------  437

Query  468  QVNKTRFTMVRFGNVLGSSGSVIPLFHKQIKAGGPLTVTHPKITRYFMTIPEAAQLVIQA  527
               KT F  VRFGNVLGS GSVIPLF +QI +GGP+TVTHP +TRYFMTIPEA++LV+QA
Sbjct  438  ---KTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQA  494

Query  528  GSMGKGGDVFVLDMGEPVKIVELAEKMIHLSGFSVRSERNPMGDIAIEFTGLRPGEKLYE  587
            G++++GG+VFVLDMG PVKIV+LA ++I+LSG       +   DI+IEF+G+RPGEKLYE
Sbjct  495  GALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-------KKEEDIGIEFSGIRPGEKLYE  547

Query  588  ELLIGDNV  595
            ELL  +++
Sbjct  548  ELLNKNEI  555

481) HCH_02405 in NC_007645


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  284 bits (1064),  Expect = 6e-78, Method: Compositional matrix adjust.
 Identities = 200/440 (46%), Positives = 306/440 (70%), Gaps = 22/440 (5%)

Query  4    RAYLHNKLIKPKEKVVIYGAGHAGVQLAIAL--SQGSDYQPVLYVDDDKRKQGSIVQG--  59
            R Y+ ++ +  K  +V+ GAG++G  L   +  SQ+   QPVL VDDDK KQ   +    
Sbjct  130  RRYFIDNAVEKKATLVV-GAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERV  188

Query  60   -LHVYSPAELDELIKDYKVKKVLLAISDAPQSTKRL--ILRFLEPFPVEVLKIPSFTDLI  116
             ++ Y   ++ EL+K    +   + I+ +  S KRL  I ++ +   VE++K+P++ D++
Sbjct  189  KVQGYV-EDIPELVKK--FRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVL  245

Query  117  EGKSKIQELRSVEIEDLLGRDCVEPDMDLMLSCAQNKNVMVTGAGGSIGSELCRQLVRLA  176
             G   +++L+ VE+EDLLGRD VE DM L+     NK ++VTGAGGSIGSE+CRQ+ ++ 
Sbjct  246  SGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFD  305

Query  177  PIKLVLLEQSEFALYEITKALSEICALRNLQVDLVPVLGSVTNKDLIGSVVANYGIHTLY  236
            P K++LL ++E ++Y I + LS   + R   +++VPV++ V NK  I  V+ ++   ++Y
Sbjct  306  PQKIILLGHGENSIYSIHQELSKTYGNR---IEFVPVIADVQNKTRILEVMNEFKPYAVY  362

Query  237  HAAAYKHVPIVERNAIEGAKNNVLGTYYAALAARTHGVEKFVLISTDKAVKPVNVMGQTK  296
            HAAA KHVP++E N+ E+ +NN+LGT   A +A+   V KFV+ISTDKAV+P NVMG TK
Sbjct  363  HAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATK  422

Query  297  RAAEIIVRKMAEKPSQTTFCSVRFGNVLGSSGSVVPLFRDQIKRGGPVTVTHPDVTRFFM  356
            R AE++++ + E  S+T+F +VRFGNVLGS GSV+PLF++QI  GGPVTVTHP++TR+FM
Sbjct  423  RIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFM  482

Query  357  TIPEAAQLVIQAGGMADGDGEVFVLDMGTPIKIKDLAYKMVHLMGLDVKDEDNPDGNIEI  416
            TIPEA++LV+QAG++A+G GEVFVLDMG P+KI DLA ++++L G       + + +I I
Sbjct  483  TIPEASRLVLQAGALAQG-GEVFVLDMGKPVKIVDLAKNLIRLSG-------KKEEDIGI  534

Query  417  VYTGLRQGEKLHEQLFDEDD  436
             ++G+R GEKL E+L++ ++
Sbjct  535  EFSGIRPGEKLYEELLNKNE  554

482) SULAZ_0357 in NC_012438


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  283 bits (1061),  Expect = 1e-77, Method: Compositional matrix adjust.
 Identities = 210/442 (48%), Positives = 315/442 (72%), Gaps = 12/442 (2%)

Query  155  KRTLIVGAGSTGERIVRGLIKDPNY--NPVGFVDDDPNKLGTTIHG-VPVLNSLDNIQDV  211
            K TL+VGAG  G  ++R +++  +   +PV  VDDD NK   TI   V V   +++I ++
Sbjct  141  KATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPEL  200

Query  212  IKENRIESVILAIPSLNHREIKRLYNFIKEQGINDIKIVPSLKNLPNNIELSVKTLKDIS  271
            +K  RI  +I+AIP+L+++ ++ + ++ + +G++ +K+ P++ ++ +  EL V+ LK + 
Sbjct  201  VKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKM-PNIEDVLSG-ELEVNNLKKVE  258

Query  272  IEDLLFREEINIDKDKVTKFLkgkkifisgaggsigsEIVRQVIDFNPCMIIAFEIDETE  331
            +EDLL R+ +++D   +++ L  K I+++GAGGSIGSEI RQV  F+P  II +  +E  
Sbjct  259  VEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENS  318

Query  332  LYNLTLEVLDKCKGYG--IEFIPIVGDIRNKDKLDNIFKKYAPKIVFHAAAYKHVPLMEY  389
            +Y++  E+    K YG  IEF+P+++D++NK ++ ++ + + P  V+HAAA KHVPLMEY
Sbjct  319  IYSIHQEL---SKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEY  375

Query  390  FPEEAVKTNVFGTYNLADVSVKYKVEKFVNISTDKAVNPTSIMGATKRLAEIICNSFNQV  449
             P+EA++ N++GT N+A+ +    V KFV ISTDKAVNP+++MGATKR+AE++ +S+N+ 
Sbjct  376  NPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNED  435

Query  450  NI-TKFISVRFGNVLGSRGSVIPIFLEQIKKGGPVTVTHPEMQRYFMTIPEAVLLVLQAA  508
            N  T F++VRFGNVLGSRGSVIP+F +QI  GGPVTVTHPEM RYFMTIPEA  LVLQA+
Sbjct  436  NSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAG  495

Query  509  AMGEGGEIFVLDMGEPIKIVKLAEELIRLQNLEPYKDIEIVFSGLRPGEKLFEELLTAEE  568
            A+++GGE+FVLDMG P+KIV LA +LIRL       DI I FSG+RPGEKL+EELL  +E
Sbjct  496  ALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKE-EDIGIEFSGIRPGEKLYEELLNKNE  554

Query  569  GTDKTYHEKIYIAKNPKFMTLQ  590
               +   EKIY +K   ++  +
Sbjct  555  IHPQQVYEKIYRGKVDHYIKTE  576

483) Theba_2013 in NC_017934


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  283 bits (1060),  Expect = 2e-77, Method: Compositional matrix adjust.
 Identities = 239/578 (42%), Positives = 367/578 (64%), Gaps = 29/578 (5%)

Query  12   RNLLLLVVDSLIV----YFAY-ILGMYFR-YGI---FTLDEPEFFVNGIYFSAFIVVSLI  62
            R L+L+++DS+IV    +++Y IL  YF+ Y+I          +  + I+   F      
Sbjct  9    RFLILIIIDSFIVTFSVFLGYAILEPYFKGYSIDLLVLSSVILLVSHHIFAYVF------  62

Query  63   LNGVYRIAWSYSYFRDYFIILRAVIVGYAIGFLAGRFLNLFEIRFLTVPFTVSTMAAIIS  122
               +Y+ AW Y+   +   +L+AV  +  +  L    L + E  FL + F    M     
Sbjct  63   --NLYHRAWEYASVSELMSVLKAVTSS-IVVTLLLVSLLISESPFLRLYFITWMM----H  115

Query  123  VFLLIWSRFFWLSILSRNHPIVSSEER-VFIVGAGDAGTSIAEELSRHPENGLVVGF-ID  180
            ++L+  SR+FW  +  R     + E +  ++VGAG++G+ +  E+ R  +  +   + +D
Sbjct  116  LLLIGGSRLFW-RVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVD  174

Query  181  DSPKKLRKRIRG-IPVLGNTDEIMPLVEKMGVRKVIIAIPSADASTLRRIFSKIDVSKVK  239
            D  +K +  I   + V G  ++I  LV K  ++K+IIAIP+     L  I    ++  V 
Sbjct  175  DDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVE  234

Query  240  AQTLPSITEIMDGKAKLGYLREINIEDLLGRESVQIDLNSLKDYVVGRTVLITGAGGSIG  299
               +P+I +++ G   +  L+ +++EDLLGR++V++D+  +   +  +T+L+TGAGGSIG
Sbjct  235  LFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIG  294

Query  300  SELCRQIaplgpgrlllagkgENSIYEISQEIGSLFPD-LKVSQLIGDVADRSRMRYIFN  358
            SE+CRQ++ ++P +++L G GENSIY I QE++  + + +    +I+DV +++R+  + N
Sbjct  295  SEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMN  354

Query  359  KMRPQVVFHAAAHKHVPIMEENPTEAFRVNSLGTYNIASLADEFGVETMVVISTDKAVRP  418
              +P  V+HAAAHKHVP+ME NP EA+R N LGT N+A  A E  V   V+ISTDKAV P
Sbjct  355  EFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNP  414

Query  419  SSVMGVSKRIAEEFVRSIS-SRSNTKFGIVRFGNVLGSRGSVIPLFKKQIQSGGPVTVTD  477
            S+VMG +KRIAE  ++S++   S+T F  VRFGNVLGSRGSVIPLFK+QI+SGGPVTVT+
Sbjct  415  SNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTH  474

Query  478  PRMTRYFMTIPEAVTLVLQAGAFSGDGDVFVLDMGEPVKISSLANEMITLAGYIPHQEIE  537
            P MTRYFMTIPEA  LVLQAGA++ +G+VFVLDMG PVKI  LA+++I L+G   +++I 
Sbjct  475  PEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIG  533

Query  538  IKYTGVRPGEKLFEELVLTNEELIQTKHPKIFRLKMNE  575
            I ++G+RPGEKL+EEL+  NE   Q    KI+R K+++
Sbjct  534  IEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDH  571

484) GNIT_2482 in NC_016041


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  282 bits (1057),  Expect = 3e-77, Method: Compositional matrix adjust.
 Identities = 198/458 (44%), Positives = 318/458 (70%), Gaps = 28/458 (6%)

Query  44   LLSVGGARLLVRALVTQF--TGLNKLPVVIYGAGSAGRQLATGIATGLEFYVSAF--IDD  99
            LL +GG+RL+ R     F   +++K + ++ GAG +G  L   +  + +  + +   +DD
Sbjct  116  LLLIGGSRLFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDD  175

Query  100  DKSKHGSVIQGVPVISLF--ELKSLVEAGKATKVLLALPSASR---SERNRV--INSLEK  152
            DK+K+   I     +  +  ++  LV   +  K+++A+P+ S+   +E N++  I+++E 
Sbjct  176  DKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVEL  235

Query  153  YQVQVQTIPGIKDVIEGNINPAEFVDVEIEDLLGREPVIPLPQLMAQNITAKNVMVSGAG  212
            ++     +P I DV+ G+++  ++  VE+EDLLGR+PV     L+++++T K ++V+GAG
Sbjct  236  FK-----MPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAG  290

Query  213  GSIGAELCRQIIKFKPTTLVLLELSEFALYEIEKELSEYITKNGLKIKLYPLLGSVQHIN  272
            GSIG+E+CRQ+ KF P  ++LL  +E ++Y I++ELS      G +I + P+++ VQ+  
Sbjct  291  GSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELS---KTYGNRIEFVPVIADVQNKT  347

Query  273  RVENVMRAFNINTIYHAAAYKHVPLVEHNVVEGIRNNVFGTYYaaraainagaETFVLVS  332
            R+ +VM  F+  ++YHAAA KHVPL+E N  E+IRNN++GT   A +A ++    FV++S
Sbjct  348  RILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMIS  407

Query  333  TDKAVRPTSVMGASKRMAELVLQALSQASFNKNTRFCMVRFGNVLGSSGSVLPLFRRQIK  392
            TDKAV P++VMGA+KR+AE+V+Q+L++   N +T F  VRFGNVLGS GSV+PLF+ QI 
Sbjct  408  TDKAVNPSNVMGATKRIAEMVIQSLNED--NSKTSFVAVRFGNVLGSRGSVIPLFKNQIE  465

Query  393  EGGPITLTHEDITRYFMTNSEAAQLVIQAGAMGKGGDVFVLDMGDSVKIKDLAEKLIRLS  452
             GGP+T+TH ++TRYFMT +EA++LV+QAGA+++GG+VFVLDMG +VKI DLA +LIRLS
Sbjct  466  SGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLS  525

Query  453  GLEIKDDSNPNGDISIEYTGLRPGEKLFEELLIGDNVH  490
            G       + + DI+IE++G+RPGEKL+EELL  +++H
Sbjct  526  G-------KKEEDIGIEFSGIRPGEKLYEELLNKNEIH  556

485) capD2 in NC_021237


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  282 bits (1056),  Expect = 3e-77, Method: Compositional matrix adjust.
 Identities = 202/485 (42%), Positives = 320/485 (66%), Gaps = 46/485 (9%)

Query  117  FNFWWLSLIMIGGLRL---AMRQYFLDDWFSTTQHMPFSNTDNNLPKVAIYGAGAAGNQL  173
            F  W + L++IGG RL     R+YF+D+             +++   V   GAG +G+ L
Sbjct  109  FITWMMHLLLIGGSRLFWRVYRRYFIDN-----------AVEKKATLVV--GAGQGGSVL  155

Query  174  VAALRMGRAMR--PVAFIDDDKSIADRVIAG---LHVYQPKNIQRMIDATGAQEVLLAIP  228
            +  +  ++ MR  PV  +DDDK+     I+    ++ Y   +I  ++     + +++AIP
Sbjct  156  IREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGY-VEDIPELVKKFRIKKIIIAIP  214

Query  229  SSSRGRRREILSFLENYPFHVRSVPGFMDLASGRVKVDDIQAVDIADLLGRDAVPAQEDL  288
            + S+ R  EI  + +    ++  +P + D+ SG + V++++ V++ DLLGRD+V  +  L
Sbjct  215  TLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMAL  274

Query  289  LERCVTKKVVLVTGAGGSIGSELCRQILLLRPTVLLLFEHSEFNLYSIFSELEGRVARES  348
            + R +T+K +LVTGAGGSIGSE+CRQ+  + P  ++L+ H+E ++YSI  EL    +   
Sbjct  275  ISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGN--  332

Query  349  LSVKVLPILGTIKSHEKLVDIMTTWKVNTVYHAAAYKHVPMVEHNISEGFFNNVIGTLNT  408
              +  +P+++ +++  +++++M   K  +VYHAAA KHVP++E N  E++ NN++GT N 
Sbjct  333  -RIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNV  391

Query  409  AQAALISGVTDFVLISTDKAVRPTNIMGSTKRLAELTLQALSREKDPVLFDVAGCEQIRN  468
            A++A  + V+ FV+ISTDKAV P+N+MG+TKR+AE+ +Q+L+ ++              +
Sbjct  392  AESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDN--------------S  437

Query  469  NTRFTMVRFGNVLGSSGSVIPLFHKQIQSGGPLTVTHPKITRYFMTIPEAAQLVIQAGSM  528
            +T F  VRFGNVLGS GSVIPLF +QI+SGGP+TVTHP +TRYFMTIPEA++LV+QAG++
Sbjct  438  KTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGAL  497

Query  529  GLGGDVFVLDMGEPVKIVELAEKMIHLSGLTVRSEKMPHGDIAIEFTGLRPGEKLYEELL  588
            + GG+VFVLDMG PVKIV+LA ++I+LSG         + DI+IEF+G+RPGEKLYEELL
Sbjct  498  AQGGEVFVLDMGKPVKIVDLAKNLIRLSG-------KKEEDIGIEFSGIRPGEKLYEELL  550

Query  589  IGDNV  593
              +++
Sbjct  551  NKNEI  555

486) wbpM in NC_004578


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  282 bits (1056),  Expect = 3e-77, Method: Compositional matrix adjust.
 Identities = 225/538 (42%), Positives = 356/538 (67%), Gaps = 56/538 (10%)

Query  70   FGMYRAVMRYFGNDALIAIIKAVTMSSLILGCMVYVYSNHQQLVPRSVIFNYWWLSLVMI  129
            F +Y+    Y +   L++++KAVT S ++   +V +  ++  ++   + F  W + L++I
Sbjct  62   FNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLR--LYFITWMMHLLLI  119

Query  130  GGLRL---AMRQYFLGDWFAAAQHVPFAKSDNGLQKVA--IYGAGAAGNQLV-AALRMGR  183
            GG RL     R+YF+               DN+++K A  + GAG +G+ L+   LR   
Sbjct  120  GGSRLFWRVYRRYFI---------------DNAVEKKATLVVGAGQGGSVLIREMLRSQD  164

Query  184  L-MHPVAFIDDDESISNRVISG---LQVYKPRNIQRMIDSTGAQEILLAIPSSSRGRRRE  239
            + M+PV  +DDD +  +  I+    +Q Y   +I  ++     + I++AIP+ S+ R  E
Sbjct  165  MRMQPVLAVDDDKNKQKMTITERVKVQGY-VEDIPELVKKFRIKKIIIAIPTLSQKRLNE  223

Query  240  ILGF--LEGFPLHVRSVPGFMDLAAGRVKVDDLQEVDIADLLGRDAVPARENLLEHCIKG  297
            I  +  +EG  L    +P + D+ +G + V++L+ V++ DLLGRD+V     L+ + +  
Sbjct  224  INKICNIEGVELF--KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTN  281

Query  298  KTVLVTGAGGSIGSELCRqilllqpvqllllDHSEFNLYSILSELEQRSARESLSVKLLP  357
            KT+LVTGAGGSIGSE+CRQ+  ++P +++LL+H+E ++YSI  EL +  +     + ++P
Sbjct  282  KTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGN---RIEFVP  338

Query  358  ILGSVRNHPKLLSIMKTWKVDTVYHAAAYKHVPMVEHNIAEGVINNVVGTLNTAQAALQA  417
            +++ V+N  ++L +M+  K  +VYHAAA KHVP++E N  E++ NN++GT N A++A ++
Sbjct  339  VIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEG  398

Query  418  GVSNFVLISTDKAVRPTNVMGSTKRLAELILQALSRETAPVIFGDKANVYQVNKTRFTMV  477
             VS+FV+ISTDKAV P+NVMG+TKR+AE+++Q+L+ + +              KT F  V
Sbjct  399  EVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNS--------------KTSFVAV  444

Query  478  RFGNVLGSSGSVIPLFHKQIQSGGPLTVTHPKITRYFMTIPEAAQLVIQAGSMGHGGDVF  537
            RFGNVLGS GSVIPLF +QI+SGGP+TVTHP +TRYFMTIPEA++LV+QAG++++GG+VF
Sbjct  445  RFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVF  504

Query  538  VLDMGEPVKIVELAEKMIHLSGLAIRSEKNPHGDISIEFTGLRPGEKLYEELLIGDNV  595
            VLDMG PVKIV+LA ++I+LSG       + + DI+IEF+G+RPGEKLYEELL  +++
Sbjct  505  VLDMGKPVKIVDLAKNLIRLSG-------KKEEDIGIEFSGIRPGEKLYEELLNKNEI  555

487) BJAB07104_00101 in NC_021726


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  282 bits (1055),  Expect = 4e-77, Method: Compositional matrix adjust.
 Identities = 195/442 (45%), Positives = 309/442 (70%), Gaps = 19/442 (4%)

Query  126  WCSRAFIRFIVKATLQTGEERKRIAIYGAGDAGQQIAAVLYRSGNH--LPVFFIDDNTSL  183
            W  R + R+++  ++    E+K   + GAG++G  +   + RS +    PV+ +DD+ + 
Sbjct  126  W--RVYRRYFIDNAV----EKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNK  179

Query  184  QDHMVGG-LKVLS-LEKALQRFEKYKTDEILLALPSVGRVRKSEIIQQLEPAHLKITELP  241
            Q   +   +KV + +E   +   K++   I++A+P++++ R +EI +  +   + +  +P
Sbjct  180  QKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMP  239

Query  242  GLTQLVDGELKVADIREVDIIDLLGRDPVPPVDHLFAKNIQNKVVMVTGAGGSIGSELCR  301
             + +++ GEL V +++ V++ DLLGRDPV     L+++++ NK ++VTGAGGSIGSE+CR
Sbjct  240  NIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICR  299

Query  302  QIIKNQPKLVIVYEITEFALYSIDKELRLT--AQCEIVPILGTVQDQQKLERIIEQYSVQ  359
            Q+ K +P+ +I+    E ++YSI++EL  T   + E+VP+++ VQ++ ++  +++++   
Sbjct  300  QVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPY  359

Query  360  TVYHAAAYKHVPLVECNPIAGLKNNAVGTANSLNAAVKKGVETFVLISTDKAVRPTNVMG  419
            +VYHAAA KHVPL+E NP  +++NN +GT N  ++A    V  FV+ISTDKAV P+NVMG
Sbjct  360  AVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMG  419

Query  420  ASKRMAELYCQAMAEVQKQTQISIVRFGNVLGSSGSVVPLFKQQIAKGGPITVTHPEVTR  479
            A+KR+AE+  Q++ E + +T +  VRFGNVLGS GSV+PLFK+QI  GGP+TVTHPE+TR
Sbjct  420  ATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTR  479

Query  480  YFMTIPEASQLVIQAGALGRGGDVFLLDMGEPVRIQDLARQMISLSGLTVREQGSMQGDI  539
            YFMTIPEAS+LV+QAGAL++GG+VF+LDMG PV+I DLA+++I LS       G  + DI
Sbjct  480  YFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLS-------GKKEEDI  532

Query  540  EIHYSGLRPGEKLYEELLIDQE  561
             I++SG+RPGEKLYEELL  +E
Sbjct  533  GIEFSGIRPGEKLYEELLNKNE  554

488) Hprae_0324 in NC_017455


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  282 bits (1054),  Expect = 4e-77, Method: Compositional matrix adjust.
 Identities = 195/439 (45%), Positives = 310/439 (71%), Gaps = 20/439 (4%)

Query  2    KNVLIVGAGSAGKHVLKEITNNGHKYDYNVIGFLDADSSKHGNEIDGYEILDHHDNINKY  61
            K  L+VGAG +G  +++E+  + +     +   L  D  K+ + +     + ++ +++ Y
Sbjct  141  KATLVVGAGQGGSVLIREMLRSQDM---RMQPVLAVDDDKNKQKMT----ITERVKVQGY  193

Query  62   IDEFD--INEVIVATTEINHQGLNKIYDNLKTFDK-----NIEIKVLPTVEELLKGEPFT  114
            ++++   ++   +    I    L++    L+ ++K      +E+  +P +E++L GE   
Sbjct  194  VEDIPELVKKFRIKKIIIAIPTLSQ--KRLNEINKICNIEGVELFKMPNIEDVLSGELEV  251

Query  115  KQLREVQVEDLLGRESIQinneninkyinnkkVLVTGAAGSIGSELCRQIVKYNPKELII  174
            ++L+ V+VEDLLGR++++++   I++ + NK +LVTGA+GSIGSE+CRQ+ K++P+ +I+
Sbjct  252  NNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIIL  311

Query  175  LDINENDLYFLKLFLERHYEVEINFE--IANIREKDKLEFLFKEYKPDLVYHAAAHKHVP  232
            L+  EN +Y +   L + Y   I+F   IA++++K ++  + +E+KP  VYHAAAHKHVP
Sbjct  312  LGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVP  371

Query  233  LMEKNIEEAVNNNVFGSKNLLEMADKYQVEKFVLISTDKAVNPTNVMGATKRLSEIILEN  292
            LME N +EA+ NN++G+KN+ E A   +V KFV+ISTDKAVNP+NVMGATKR++E+++++
Sbjct  372  LMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQS  431

Query  293  IN-KNSKTMYMAVRFGNVLGSNGSVVPLFKSLIKEGKDLTVTHEEVTRYFMTIPEAAQLV  351
            +N  NSKT ++AVRFGNVLGS GSV+PLFK+ I  G  +TVTH E+TRYFMTIPEA++LV
Sbjct  432  LNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLV  491

Query  352  LEAGYIGQGGEVFVLDMGKPIKIMDLAEKMIELSGLRVGKDIDIKITGLRPGEKLYEELL  411
            L+AG ++QGGEVFVLDMGKP+KI+DLA ++I LSG +   DI+I ++G+RPGEKLYEELL
Sbjct  492  LQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIGIEFSGIRPGEKLYEELL  550

Query  412  YDIDSCQKTENDKIYISQI  430
               +   +   +KIY +++
Sbjct  551  NKNEIHPQQVYEKIYRGKV  569

489) HEAR1151 in NC_009138


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  282 bits (1056),  Expect = 4e-77, Method: Compositional matrix adjust.
 Identities = 206/467 (45%), Positives = 327/467 (71%), Gaps = 32/467 (6%)

Query  115  WVSAILYVVASRF---MARGYLLRTN-DKSGAIRVAIYGAGHSGMQLASA-LRAGSAYL-  168
            W+  +L + +SR+   + R Y++    +K +++ V   GAG++G  L    LR+    + 
Sbjct  112  WMMHLLLIGGSRLFWRVYRRYFIDNAVEKKATLVV---GAGQGGSVLIREMLRSQDMRMQ  168

Query  169  PVALLDDKKELQGATIAG-VKVWA-PDCLPKLVADKQVQEILLAMPSLRKAEQKVI----  222
            PV  +DD K+ Q  TI+  VKV +  + +P LV   +++ I++A+P+L +   + I    
Sbjct  169  PVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKIC  228

Query  223  -LERLEPLKIKIKVTPPIASLINGELRVQDIRDIEIEDLLGRDTVEPNAQLLTTCITGKT  281
             +E +E +K+     P I  +++GEL V++++ +E+EDLLGRD VE +  L++  +T KT
Sbjct  229  NIEGVELFKM-----PNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKT  283

Query  282  VLVTGAGGSIGSELCRQiirlkpkrllllDISEFALYTIEQDLRAIEHAHDENIELLPFL  341
            +LVTGAGGSIGSE+CRQ+ ++ P++++LL+ +E ++Y+I+Q+L     + ++ IE++P +
Sbjct  284  ILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQEL---SKTYGNRIEFVPVI  340

Query  342  GSVLDAEKCERILRTFAVDTIYHAAAYKHVPLVEHNPIQGIRNNAFGTMMLAQAAIAAKV  401
            + V +  +   ++  F   ++YHAAA KHVPL+E NP ++IRNN +GT  +A++A  + V
Sbjct  341  ADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEV  400

Query  402  ACFVLISTDKAVRPTNVMGTTKRLSELILQGLSRAQSQTRFCMVRFGNVLGSSGSVVPLF  461
            + FV+ISTDKAV P+NVMG+TKR++E+++Q+L+  +S+T F  VRFGNVLGS GSV+PLF
Sbjct  401  SKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLF  460

Query  462  RKQIMAGGPITLTHPEITRYFMTIPEAAQLVLQAGAMGEGGDVFVLDMGEPVKILDLATR  521
            ++QI +GGP+T+THPE+TRYFMTIPEA++LVLQAGA+++GG+VFVLDMG PVKI+DLA  
Sbjct  461  KNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKN  520

Query  522  MVHLSGLEVRSASNESSDAIEIRHVGLRPGEKLYEELLIGSNVEGTQ  568
            +++LSG           + I I   G+RPGEKLYEELL  ++++  Q
Sbjct  521  LIRLSG--------KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQ  559

490) capD in NC_015740


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  282 bits (1056),  Expect = 4e-77, Method: Compositional matrix adjust.
 Identities = 218/502 (44%), Positives = 334/502 (67%), Gaps = 48/502 (9%)

Query  123  FNYWWLSLVLIGGLRL---VMRQYFMGDWFSPDSTIKFKFKGKDAGLPKVAVYGAGAAGN  179
            F  W + L+LIGG RL   V R+YF+      D+++      K A L    V GAG +G+
Sbjct  109  FITWMMHLLLIGGSRLFWRVYRRYFI------DNAV-----EKKATL----VVGAGQGGS  153

Query  180  QLVAALRMGRAMR--PVAFIDDDPNLQNRSIAG---LRVYSAKHITQMVEETGAAEILLA  234
             L+  +  ++ MR  PV  +DDD N Q+ +I+    ++ Y   +I ++V       I++A
Sbjct  154  VLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGY-VEDIPELVKKFRIKKIIIA  212

Query  235  IPSASRGRRREILEMLERFPLHVRSVPGFMDLASGKVQVEDIQEVDIADLLGRDAVPPQQ  294
            IP+ S+ R  EI  + +   +++  +P + D+ SG ++V++++ V++ DLLGRD+V  + 
Sbjct  213  IPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDM  272

Query  295  ALFEKCIRGKVVMVTGAGGSIGSELCRQILSSKPKALLLFEHCEFNLYsihlelerlier  354
            AL+ + +  K ++VTGAGGSIGSE+CRQ+    P+ ++L+ H E ++YSIH EL +    
Sbjct  273  ALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGN  332

Query  355  sslATRLVPILGSIRNPERLLDVMRTWEVETIYHAAAYKHVPMVEHNVAEGVLNNVIGTL  414
                  +VP+++ ++N  R+L+VM      ++YHAAA KHVP++E N  E++ NN++GT 
Sbjct  333  R---IEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTK  389

Query  415  NTAQAAVQAGVSNFVLISTDKAVRPTNVMGSTKRVAELILQALSREPAPCLFGASGVHHV  474
            N A++A ++ VS+FV+ISTDKAV P+NVMG+TKR+AE+++Q+L+ + +            
Sbjct  390  NVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNS------------  437

Query  475  NKTRFTMVRFGNVLGSSGSVIPRFYAQIRAGGPVTVTHPKITRYFMTIPEAAQLVIQAGS  534
             KT F  VRFGNVLGS GSVIP F  QI +GGPVTVTHP +TRYFMTIPEA++LV+QAG+
Sbjct  438  -KTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGA  496

Query  535  MGQGGDVFVLDMGQPVKIAELAEKLIHLSGLSVRSEKCPHGDIAIEYTGLRPGEKLYEEL  594
            ++QGG+VFVLDMG+PVKI +LA +LI+LSG   + E     DI+IE++G+RPGEKLYEEL
Sbjct  497  LAQGGEVFVLDMGKPVKIVDLAKNLIRLSG---KKE----EDIGIEFSGIRPGEKLYEEL  549

Query  595  LIGDNVSATE-HPMIMRANEEH  615
            L  +++ + +    I R++ +H
Sbjct  550  LNKNEIHPQQVYEKIYRGKVDH  571

491) amb0099 in NC_007626


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  282 bits (1056),  Expect = 4e-77, Method: Compositional matrix adjust.
 Identities = 210/512 (42%), Positives = 339/512 (67%), Gaps = 25/512 (4%)

Query  97   LYRGVWRYASVNDLVALTRaatltilvflallflttrlqalPRSVLLINWFVLLALLGGP  156
            LY+  W YASV++L+++ +A T +I+V L L+ L     ++ R + +I W + L L+GG+
Sbjct  64   LYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLR-LYFITWMMHLLLIGGS  122

Query  157  RFIYRTFKDHHRNRRRAQGDHVRVPVLLVGAGDEAELFIRAAHSPDAEYRAVGLLSSRGA  216
            R++ R ++     R   +    + + L+VGAG+ + ++IR    ++ + R   +L+  + 
Sbjct  123  RLFWRVYR-----RYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQ-DMRMQPVLAVDDD  176

Query  217  RVGRHI---HGIDVLGSTDEMGEVVAALKAKGQAPQRLVITDHRLDGSEVRQLLDDADRL  273
            +  + +   + + V G  +++ E+V  ++ K        +++ RL+  E+ ++    +  
Sbjct  177  KNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLN--EINKI---CNIE  231

Query  274  GMTLARIPRMMDLKDGVEERVTMRPIAVEDLLGRPQAVLDRVSMESMIKGRRVLVTGAGG  333
            G+ L ++P + D+  G  E   ++ + VEDLLGR    LD   +   +  + +LVTGAGG
Sbjct  232  GVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGG  291

Query  334  SIGSELVRQISDFGPASLVLFEACEFNLYAIDQEISLRQPG-MELVPLLGDVRDPVRVGE  392
            SIGSE+ RQ+S F+P  ++L+   E ++Y+I+QE+S      +E+VP+++DV++  R+ E
Sbjct  292  SIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILE  351

Query  393  AMARYRPDLVFHAAALKHVPMVEYNPDEGILTNCVGTRLVADACRANGVSLMVQISTDKA  452
             M  ++P  V+HAAA KHVP++EYNP+E+I  N +GT+ VA++ +   VS  V ISTDKA
Sbjct  352  VMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKA  411

Query  453  VNPTNVMGASKRVAEMYAQALDLAESDGGGTRFVTVRFGNVLGSTGSVVPLFQKQLAEGG  512
            VNP+NVMGA+KR+AEM  Q+L+    D + T FV+VRFGNVLGS GSV+PLF++Q+  GG
Sbjct  412  VNPSNVMGATKRIAEMVIQSLN---EDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGG  468

Query  513  PLTVTHPDMTRYFMTVREAVELVLQASAFGIGHPAYRGKIFVLDMGEPVKIVHLARQMIR  572
            P+TVTHP+MTRYFMT+ EA  LVLQA+A++ G     G +FVLDMG PVKIV+LA+++IR
Sbjct  469  PVTVTHPEMTRYFMTIPEASRLVLQAGALAQG-----GEVFVLDMGKPVKIVDLAKNLIR  523

Query  573  LAGLRPDVDVKITFTGLRPGEKLFEELFHGSE  604
            L+G + + D+ I F+G+RPGEKL+EEL++ +E
Sbjct  524  LSG-KKEEDIGIEFSGIRPGEKLYEELLNKNE  554

492) PSPPH_3656 in NC_005773


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  281 bits (1053),  Expect = 7e-77, Method: Compositional matrix adjust.
 Identities = 214/489 (44%), Positives = 330/489 (68%), Gaps = 54/489 (11%)

Query  119  FNYWWLSMVMIGGLRL---AMRQYFLGDWFAAAQHVPFAKSDNGLQKVA--IYGAGAAGN  173
            F  W + +++IGG RL     R+YF+               DN+++K A  + GAG +G+
Sbjct  109  FITWMMHLLLIGGSRLFWRVYRRYFI---------------DNAVEKKATLVVGAGQGGS  153

Query  174  QLV-AALRMGRL-MHPVAFIDDDESISNRVISG---LQVYKPRNIQRMIDSTGAQEILLA  228
             L+   LR   + M+PV  +DDD +  +  I+    +Q Y   +I  ++     + I++A
Sbjct  154  VLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGY-VEDIPELVKKFRIKKIIIA  212

Query  229  IPSSSRGRRREILGF--LEGFPLHVRSVPGFMDLAAGRVKVDDLQEVDIADLLGRDAVPA  286
            IP+ S+ R  EI  +  +EG  L    +P + D+ +G + V++L+ V++ DLLGRD+V  
Sbjct  213  IPTLSQKRLNEINKICNIEGVELF--KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVEL  270

Query  287  RDNLLEHCIKGKTVLVTGAGGSIGSELCRqilllqptqllllDHSEFNLYSILTELEQRA  346
               L+ + +  KT+LVTGAGGSIGSE+CRQ+  ++P +++LL+H+E ++YSI  EL +  
Sbjct  271  DMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTY  330

Query  347  ARESLSVKLLPILGSVRNHPKLLSIMKTWKVDTVYHAAAYKHVPMVEHNIAEGVINNVVG  406
            +     + ++P+++ V+N  ++L +M+  K  +VYHAAA KHVP++E N  E++ NN++G
Sbjct  331  GN---RIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILG  387

Query  407  TLNTAQAALQAGVSNFVLISTDKAVRPTNVMGSTKRLAELILQALSRETAPVIFGDKANV  466
            T N A++A ++ VS+FV+ISTDKAV P+NVMG+TKR+AE+++Q+L+ + +          
Sbjct  388  TKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNS----------  437

Query  467  YQVNKTRFTMVRFGNVLGSSGSVIPLFHKQIQSGGPLTVTHPKITRYFMTIPEAAQLVIQ  526
                KT F  VRFGNVLGS GSVIPLF +QI+SGGP+TVTHP +TRYFMTIPEA++LV+Q
Sbjct  438  ----KTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQ  493

Query  527  AGSMGHGGDVFVLDMGEPVKIVELAEKMIHLSGLSIRSEKNPQGDISIEFTGLRPGEKLY  586
            AG++++GG+VFVLDMG PVKIV+LA ++I+LSG       + + DI+IEF+G+RPGEKLY
Sbjct  494  AGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-------KKEEDIGIEFSGIRPGEKLY  546

Query  587  EELLIGDNV  595
            EELL  +++
Sbjct  547  EELLNKNEI  555

493) Pfl01_4051 in NC_007492


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  281 bits (1051),  Expect = 9e-77, Method: Compositional matrix adjust.
 Identities = 201/489 (42%), Positives = 325/489 (67%), Gaps = 50/489 (10%)

Query  119  FNYWWLSLVIIGGLRL---CMRQYFMGDWFTAAQHVPFTSRDDGLTKVAIYGAGVAGNQL  175
            F  W + L++IGG RL     R+YF+++            +   L    + GAG +G+ L
Sbjct  109  FITWMMHLLLIGGSRLFWRVYRRYFIDNA---------VEKKATL----VVGAGQGGSVL  155

Query  176  VAALRMGRVMR-----PVafidddasiadraiSGLQVYKPKHIQQMIDVTGAQEILLALP  230
            +  +  ++ MR     +V    +   ++      +Q Y   +I +++     + I++A+P
Sbjct  156  IREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGY-VEDIPELVKKFRIKKIIIAIP  214

Query  231  SSTRARRREILNL--LEGFPLHIRSVPSFTDLASGRVKVDDIQEVDIADLLGRDSVPAQS  288
            + ++ R  EI ++  +EG  L    +P++ D+ SG + V++++ V++ DLLGRD+V  + 
Sbjct  215  TLSQKRLNEINKICNIEGVELF--KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDM  272

Query  289  DLLAHCITGKVVMVTGAGGSIGSELCRQIFLLGPITLLLFDHSEFNLYSILSELEQRIAR  348
             L+++ +T K ++VTGAGGSIGSE+CRQ+  ++P  ++L++H+E ++YSI  EL +  + 
Sbjct  273  ALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGN  332

Query  349  ESVSIRLLPILGSIRHPHKLLDVMKTWGVDTVYHAAAYKHVPMVEHNIAEGVLNNVIGTL  408
                I ++P+++ +++  ++L+VM+     +VYHAAA KHVP++E N  E++ NN++GT 
Sbjct  333  ---RIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTK  389

Query  409  NTAQAALQAGVSNFVLISTDKAVRPTNIMGSTKRLAELTLQALSRELAPVLFGDKANVSR  468
            N A++A ++ VS+FV+ISTDKAV P+N+MG+TKR+AE+ +Q+L+ +              
Sbjct  390  NVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNED--------------  435

Query  469  VNKTRFTMVRFGNVLGSSGSVIPLFHSQIKSGGPLTVTHPKITRYFMTIPEAAQLVIQAG  528
             +KT F  VRFGNVLGS GSVIPLF +QI SGGP+TVTHP +TRYFMTIPEA++LV+QAG
Sbjct  436  NSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAG  495

Query  529  SMGQGGDVFVLDMGEPVKIVELAEKMIHLSGLSVRSEKNVHGDIAIEFTGLRPGEKLYEE  588
            +++QGG+VFVLDMG PVKIV+LA ++I+LSG       + + DI+IEF+G+RPGEKLYEE
Sbjct  496  ALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-------KKEEDIGIEFSGIRPGEKLYEE  548

Query  589  LLIGDNVSA  597
            LL  +++ +
Sbjct  549  LLNKNEIHP  557

494) ELI_13370 in NC_007722


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  280 bits (1046),  Expect = 2e-76, Method: Compositional matrix adjust.
 Identities = 197/475 (42%), Positives = 311/475 (66%), Gaps = 29/475 (6%)

Query  136  MFALLLV-----FSRLLARYFLFDLLNQYHKSGPRSRVLIYGAGSAGRQLALSLRHEPAM  190
            M  LLL+     F R+  RYF+       +++  +   L+ GAG +G  L   + +   M
Sbjct  113  MMHLLLIGGSRLFWRVYRRYFI-------DNAVEKKATLVVGAGQGGSVLIREMLRSQDM  165

Query  191  HLAGYI---DDDDRLARKHVDGVRVHP-PTGLEDLIHDLEIDTVLLALPRIGRKQREMIV  246
            ++   +   DD ++      + V+V+    ++ +L+  + I  +++A+P +++K+ + I 
Sbjct  166  RMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEIN  225

Query  247  RQFEGISVRVLTLPAMGDLIDGRVSVGDLREIEISDLLGRDPVPPNHLLLHKTIQDKVVM  306
            +  +  +V ++ +P + D++ G + V +L+ +E+ DLLGRDPV  +  L+ + + +K ++
Sbjct  226  KICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTIL  285

Query  307  VTGAGGSIGSELCRQVSQLKPEVLILVEMAEHALYLIETELRGLQESGDIDPSIAIVTEL  366
            VTGAGGSIGSE+CRQVS++ P+ +IL+  +E+++Y I+ EL     S   +  I +V  +
Sbjct  286  VTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQEL-----SKTYGNRIEFVPVI  340

Query  367  CNVSNTDQVKRIMQRWRPGTVFHAAAYKHVPLVEDNVISGMTNNIFGTLNCARAAADAGV  426
             +V N  ++  +M+  +P +V+HAAA KHVPL+E N   ++ NNI+GT N A +A ++ V
Sbjct  341  ADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEV  400

Query  427  AHFILISTDKAVRPTNVMGASKRVCELILQALAANGSETLFAIVRFGNVLGSSGSVVPRF  486
            + F++ISTDKAV P+NVMGA+KR+ E+++Q+L  + S T F  VRFGNVLGS GSV+P F
Sbjct  401  SKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLF  460

Query  487  KEQIKNGGPITLTHREITRYFMTIPEASQLVIQAGAMAEGGEVYVLDMGEPVKIYDLAKT  546
            K+QI +GGP+T+TH E+TRYFMTIPEAS+LV+QAGA+A+GGEV+VLDMG PVKI DLAK 
Sbjct  461  KNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKN  520

Query  547  MINLSGLSVKDAEHPDGDIEIIEVGLRKGEKLYEELLIGNSPKPTR-HQRIMQAR  600
            +I LSG         + DI I   G+R GEKLYEELL  N   P +  ++I +++
Sbjct  521  LIRLSG-------KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGK  568

495) Daes_3164 in NC_014844


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  280 bits (1046),  Expect = 2e-76, Method: Compositional matrix adjust.
 Identities = 207/505 (41%), Positives = 340/505 (68%), Gaps = 19/505 (3%)

Query  65   LFGLYRGMWRYTSLDDYWKLLRVTA---LQSLILVSFVGFRFSFIGVPRSIFVIDWVLTL  121
            +F LY+  W Y+S+ +   +L+  +   + +L+LVS++    +F+     ++ I W++ L
Sbjct  61   VFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFL----RLYFITWMMHL  116

Query  122  VLCSGLRLTIRAFYTRTVVLTGSAPGRRNVLMVGAGASAEKISRE-LTANPAHYNLVGFL  180
            +L +G RL ++  Y R  +  ++A  ++  L+VGAG ++  + RE L ++  + + V  +
Sbjct  117  LLIGGSRL-FWRVYRRYFI--DNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAV  173

Query  181  DDDPGLKGRTIHGR-PVLGQVEVMGTVADRLGVDEIFIAVSEASGEEMRRMVDICKDTGV  239
            DDD   +  TI  R  V G VE +  +  ++ +  I+IA++  S   +  +  IC+  GV
Sbjct  174  DDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGV  233

Query  240  PYKILPAMTEIIDGKVGIKTLRDIDYLDLLGRSPVSLDTERIEQYLTGQTVLVTGCGGSI  299
                +P + +++ G + ++ L+ ++  DLLGR PV LD   I + LT +T+LVTG GGSI
Sbjct  234  ELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSI  293

Query  300  GSELCRQIVRFRPRHLVLVDAGEFNLYEIEMELRNSLGF-ADCTTVLGSVADRPLMDRTF  358
            GSE+CRQ+ +F P+ ++L++ GE ++Y I+ EL ++ G   +   V++ V ++  +    
Sbjct  294  GSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVM  353

Query  359  QTHRPSTVFHAAAYKHVPMLERNPWQAVRNNIEGSRAVMRAAVTAGVERFVVVSTDKAVR  418
            +  +P +V+HAAA KHVP++E NP +A+RNNI G++ V  +A  + V +FV++STDKAV 
Sbjct  354  NEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVN  413

Query  419  PTNVMGASKRVTELLMQSMSGQGTR--FMAVRFgnvvgssgsvvPLFRRQIAAGGPVTVT  476
            P+NVMGA+KR++E+++QS++ + ++  F+AVRFGNV+GS GSV+PLF+ QI +GGPVTVT
Sbjct  414  PSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVT  473

Query  477  HPDVTRYFMSISEATQLILQAGSMGEAGTGGEVFVLDMGVPVRIADMAHDLIRLSGKEPG  536
            HP++TRYFM+I+EA++L+LQAG++++   GGEVFVLDMG PV+I D+A +LIRLSGK   
Sbjct  474  HPEMTRYFMTIPEASRLVLQAGALAQ---GGEVFVLDMGKPVKIVDLAKNLIRLSGKKEE  530

Query  537  VDVEIVFTGLREGEKLFEELITEGE  561
             D+ I F+G+R GEKL+EEL+   E
Sbjct  531  -DIGIEFSGIRPGEKLYEELLNKNE  554

496) Rmag_0886 in NC_008610


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  279 bits (1044),  Expect = 3e-76, Method: Compositional matrix adjust.
 Identities = 202/452 (45%), Positives = 319/452 (71%), Gaps = 20/452 (4%)

Query  118  LLAIMAIGGLRMLARWALSDVGTFLKNS--KKNVIIYGAGAAGRQLSEALLQSKEYK--P  173
            ++ ++ IGG R++  W +     F+ N+  KK  ++ GAG +G  L   +L+S++ +  P
Sbjct  113  MMHLLLIGGSRLF--WRVYR-RYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQP  169

Query  174  VAFIDDAKDLNKQYING-VKVYG-TKHIELLIYKYSVNEILLALPSVSRQRRNEIINLLE  231
            V  +DD K+ +K  I   VKV G   +I  L+ K+ ++ I++A+P++S++R NEI ++ +
Sbjct  170  VLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICN  229

Query  232  SYPVLVRILPGVSALAQGQVKVDDLRDVSIGELLGREPISPNQSLLEVNIKNKVVMITGA  291
               V +  +P +  +  G++ V++L+ V + +LLGR+P+  + +L+  ++ NK +++TGA
Sbjct  230  IEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGA  289

Query  292  GGSIGSELCRQVISLGVSKLILFEQSELVLYTIDKELSDS--AKV-F-PILGSVVDQDRV  347
            GGSIGSE+CRQV  ++  K+IL+ ++E  +Y+I++ELS +   ++ F P+++ V ++ R+
Sbjct  290  GGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRI  349

Query  348  ERVCKQFKVQTVYHAAAYKHVPMVEFNHTEGVMNNIFGTLNCAQAAINNKVETFVLISTD  407
              V ++FK  +VYHAAA KHVP++E+N  E++ NNI+GT N A++A +  V  FV+ISTD
Sbjct  350  LEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTD  409

Query  408  KAVRPTNTMGATKRCAEMVLQALSKCQSDTRFSIVRFGNVLDSSGSVIPLFKKQIKEGGP  467
            KAV P+N MGATKR AEMV+Q+L+  +S T F  VRFGNVL+S GSVIPLFK+QI  GGP
Sbjct  410  KAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGP  469

Query  468  VTVTDKEIVRYFMTISEAVALVIQAGAMGSGGDVFVLDMGKSVRIYDLALKMIHLTGLEL  527
            VTVT+ E+ RYFMTI+EA  LV+QAGA++ GG+VFVLDMGK+V+I DLA ++I+L+G   
Sbjct  470  VTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG---  526

Query  528  KDETNLNGDIEIKITGLRPGEKLFEELLIDDN  559
                + + DI I ++G+RPGEKL+EELL  ++
Sbjct  527  ----KKEEDIGIEFSGIRPGEKLYEELLNKNE  554

497) Cycma_3105 in NC_015914


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  279 bits (1044),  Expect = 3e-76, Method: Compositional matrix adjust.
 Identities = 207/464 (45%), Positives = 315/464 (68%), Gaps = 25/464 (5%)

Query  154  FSNKAVHK--VLIFGADQNA-VLVKQAL-SNDPDLNYVV--------EGFLSSDRTMLNN  201
            F ++AV+K   L+ GA+Q + VL+++ L S+D  ++ V+        +    ++R  ++ 
Sbjct  133  FIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQG  192

Query  202  YLEQKKVYHMKDLPKLKKQKDIKELLITNENLNQREKRVVIERCIRLGIKVLTIPAAKNW  261
            Y+E        D+P L K+  IK ++I+   L+Q+    +   C   G+ ++ +P   + 
Sbjct  193  YVE--------DIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDV  244

Query  262  LSGELSSKQIKKLRIEDLLQRKPIVIDQRKVKSDLEGKKVLVTGAAGSIGSEIVRQVLTY  321
            LSGEL  +++KK+ +EDLL R P+ +D   +  +L  K +LVTGA+GSIGSEI RQV  +
Sbjct  245  LSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKF  304

Query  322  KPSLLILCDHAESPLHDVQLAMEDEFPDAKME--VVLADVSNYERMHKLFNVCRPQIVYH  379
             P  +IL +H+E+++  ++  +   + + ++E   V+ADV N  R+  + N  +P  VYH
Sbjct  305  DPQKIILLGHGENSIYSIHQELSKTYGN-RIEFVPVIADVQNKTRILEVMNEFKPYAVYH  363

Query  380  AAAYKHVPMIENNPFEAISVNVGGTRNIADLAVFFKVDKFVMVSTDKAVNPTNVMGASKR  439
            AAA KHVP++E NP EAI  N+ GT+N+A+ A    V KFVM+STDKAVNP+NVMGA+KR
Sbjct  364  AAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKR  423

Query  440  LAEIYTQSLNGIETCNTKFITTRFGNVLGSNGSVIPRFRSQIKKGGPITVTHPDITRYFM  499
            +AE+  QSLN  +  +T F++ RFGNVLGS GSVIP F++QI  GGP+TVTHP++TRYFM
Sbjct  424  IAEMVIQSLNE-DNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFM  482

Query  500  TIPEAVQLVLEAGTMGKGGEIYVFDMGKPIKIVDLAKKMIQLAGLEEGKDIDIVFSGLRP  559
            TIPEA +LVL+AG++++GGE++V+DMGKP+KIVDLAK++I+L+G  E  DI+I FSG+RP
Sbjct  483  TIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEE-DIGIEFSGIRP  541

Query  560  GEKLYEELLSSAELTLPTHHHKISIAKVLQYPYAQANASITELL  603
            GEKLYEELL+  E+      +KI  +KV +Y  ++ +  + +L+
Sbjct  542  GEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLI  585

498) Dd703_3273 in NC_012880


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  279 bits (1045),  Expect = 3e-76, Method: Compositional matrix adjust.
 Identities = 195/455 (43%), Positives = 313/455 (69%), Gaps = 23/455 (5%)

Query  123  LALGSPRVLIRTFYYHYYKR---QKPNVFIYGAGATGRDLLYALIQGDEY--HPVIILDD  177
            L +G++R L++  Y +Y+     +K   ++ GAG  G  L+  ++++++   +PV+ +DD
Sbjct  117  LLIGGSR-LFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDD  175

Query  178  DEKKIGQIICG-IKVH-HSSEFEKLKPLYHPVKLLLAINNIQKGQRLRLLEKLSHW-PIE  234
            D +K    I   +KV+    ++  L   ++  K+++AI  + + +RL  ++K+ +   +E
Sbjct  176  DKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQ-KRLNEINKICNIEGVE  234

Query  235  VQSVPAVEDIAAGKATATEIRDLDVADLLGREAVDPDRQLMAKNITNKSVMVTGAGGSIG  294
            +  +P +ED+ +G     +++ ++V DLLGR++V+ D  L+++++TNK+++VTGAGGSIG
Sbjct  235  LFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIG  294

Query  295  SELCRQILTQRPRILVLFELNEYNLYTIDQELQGIKKRLMLATKIVTALGSVQKQNRIQK  354
            SE+CRQ+    P+ ++L+   E ++Y+I+QEL    K       +V  ++ VQ++ RI  
Sbjct  295  SEICRQVSKFDPQKIILLGHGENSIYSIHQEL---SKTYGNRIEFVPVIADVQNKTRILE  351

Query  355  LIHANQIETIYHAAAYKHVPLVEDNVIEGIRNNVFGTLACAEAAIAEGVKNFTLISTDKA  414
            +++  +  ++YHAAA KHVPL+E N  E+IRNN++GT   AE+A    V +F +ISTDKA
Sbjct  352  VMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKA  411

Query  415  VRPTNIMGASKRMAELILQALAERQNPTTFTMVRFGNVLGSSGSVVPLFKKQIRQGGPVT  474
            V P+N+MGA+KR+AE+++Q+L E ++ T+F  VRFGNVLGS GSV+PLFK+QI  GGPVT
Sbjct  412  VNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVT  471

Query  475  VTHPDIIRYFMLIPEAAQLVIQAGAMGINGQVFVLDMGEPVKILDLARRMINLMGMKGYI  534
            VTHP++ RYFM IPEA++LV+QAGA++  G+VFVLDMG PVKI+DLA+ +I L G K   
Sbjct  472  VTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKK---  528

Query  535  EGQGHVEEGDIAIKFTGLRPGEKLYEELLIGENVE  569
                   E DI+I F+G+RPGEKLYEELL  ++++
Sbjct  529  -------EEDIGIEFSGIRPGEKLYEELLNKNEIH  556

499) wbpM in NC_004129


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  279 bits (1045),  Expect = 3e-76, Method: Compositional matrix adjust.
 Identities = 210/491 (43%), Positives = 325/491 (67%), Gaps = 50/491 (10%)

Query  119  FNYWWLSMVMIGGLRL---AMRQYFLGDWFTTAQHVPFTNRDDGLPKVAIYGAGAAGNQL  175
            F  W + +++IGG RL     R+YF+++           ++   L    + GAG +G+ L
Sbjct  109  FITWMMHLLLIGGSRLFWRVYRRYFIDNA---------VEKKATL----VVGAGQGGSVL  155

Query  176  V-AALRLGRL-MRPVAFIDDDGSIADRMIAG---LQVYKPKHLQQMIDDTGAEEILLAIP  230
            +   LR   + M+PV  +DDD +     I+    +Q Y   ++ +++       I++AIP
Sbjct  156  IREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGY-VEDIPELVKKFRIKKIIIAIP  214

Query  231  sssrsrrrEI--LGYLEGFPLHVRSVPGFMDLASGRVKVDDIQEVDIADLLGRDAVPAQV  288
            + S+ R  EI  +  +EG  L    +P + D+ SG + V++++ V++ DLLGRD+V  ++
Sbjct  215  TLSQKRLNEINKICNIEGVELF--KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDM  272

Query  289  DLLAHCIKGQTVLVTGAGGSIGSELCRQILLQGPSTLILLDHSEFNLYSILSELEQRVSR  348
             L+++ +  +T+LVTGAGGSIGSE+CRQ+   +P  +ILL+H+E ++YSI  EL +  + 
Sbjct  273  ALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGN  332

Query  349  ESRLVKLLPILGSVRNYEKLLSVMRTWSVDTVYHAAAYKHVPMVEHNIAEGVLNNVMGTL  408
                + ++P+++ V+N  ++L VM      +VYHAAA KHVP++E N  E++ NN++GT 
Sbjct  333  R---IEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTK  389

Query  409  NTAQAALQCGVANFVLISTDKAVRPTNVMGSTKRLAELTLQALSKELAPVLFDDLSNVSR  468
            N A++A +  V++FV+ISTDKAV P+NVMG+TKR+AE+ +Q+L+ +              
Sbjct  390  NVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNED--------------  435

Query  469  VNKTRFTMVRFGNVLGSSGSVIPLFHKQIKSGGPLTVTHPKITRYFMTIPEAAQLVIQAG  528
             +KT F  VRFGNVLGS GSVIPLF +QI SGGP+TVTHP +TRYFMTIPEA++LV+QAG
Sbjct  436  NSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAG  495

Query  529  SMGQGGDVFVLDMGEPVRIVELAEKMIHLSGLSVRSEKNPHGDIAIEFTGLRPGEKLYEE  588
            +++QGG+VFVLDMG PV+IV+LA ++I+LSG       + + DI+IEF+G+RPGEKLYEE
Sbjct  496  ALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-------KKEEDIGIEFSGIRPGEKLYEE  548

Query  589  LLIGDNVAATQ  599
            LL  +++ + Q
Sbjct  549  LLNKNEIHPQQ  559

500) Dd1591_3389 in NC_012912


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  278 bits (1042),  Expect = 4e-76, Method: Compositional matrix adjust.
 Identities = 193/455 (43%), Positives = 306/455 (68%), Gaps = 23/455 (5%)

Query  123  LALGSPRVLIRTFYYHYYKR---QKPNVFIYGAGATGRDLLYALIQGDEY--HPVIILDD  177
            L +G++R L++  Y +Y+     +K   ++ GAG  G  L+  ++++++   +PV+ +DD
Sbjct  117  LLIGGSR-LFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDD  175

Query  178  DEKKVGQIICGIKVHHSGEFEKLKPLYQPVKLLLAINNIQK--GQRLRLLEKLSHW-PIE  234
            D +K    I   +V   G  E +  L +  ++   I  I     +RL  ++K+ +   +E
Sbjct  176  DKNKQKMTITE-RVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVE  234

Query  235  VQSVPSVEDIAAGKAVATEVRDLDVADLLGRAAVDPDKQLMTKNITGKSVMVTGAGGSIG  294
            +  +P++ED+ +G     +++ ++V DLLGR +V+ D  L+++++T K+++VTGAGGSIG
Sbjct  235  LFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIG  294

Query  295  SELCRQILAQRPCTLVLFELNEYNLYTIDQELQGIKKRLMLETKIVTALGSVQKQNRVQK  354
            SE+CRQ+    P  ++L+   E ++Y+I+QEL    K       +V  ++ VQ++ R+  
Sbjct  295  SEICRQVSKFDPQKIILLGHGENSIYSIHQEL---SKTYGNRIEFVPVIADVQNKTRILE  351

Query  355  LIHTHQVETIYHAAAYKHVPLVEENVIEGIRNNVFGTLACAEAAIAEGVENFTLISTDKA  414
            +++  +  ++YHAAA KHVPL+E N  E+IRNN++GT   AE+A    V +F +ISTDKA
Sbjct  352  VMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKA  411

Query  415  VRPTNIMGTSKRMAELILQALAERQNQTTFTMVRFGNVLGSSGSVVPLFKKQIRQGGPVT  474
            V P+N+MG++KR+AE+++Q+L E +++T+F  VRFGNVLGS GSV+PLFK+QI  GGPVT
Sbjct  412  VNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVT  471

Query  475  VTHPDIIRYFMLIPEAAQLVIQAGAMGMNGQVFVLDMGEPVKILDLARRMINLMGMKSYI  534
            VTHP++ RYFM IPEA++LV+QAGA++  G+VFVLDMG PVKI+DLA+ +I L G K   
Sbjct  472  VTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKK---  528

Query  535  EGQGHAEEGDIGIKFTGLRPGEKLYEELLIGENVE  569
                   E DIGI F+G+RPGEKLYEELL  ++++
Sbjct  529  -------EEDIGIEFSGIRPGEKLYEELLNKNEIH  556

501) Mlg_0802 in NC_008340


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  278 bits (1041),  Expect = 6e-76, Method: Compositional matrix adjust.
 Identities = 217/498 (44%), Positives = 344/498 (70%), Gaps = 29/498 (5%)

Query  67   FGLYRAVVRYMGLQAIIAVVQGVTLSALVFGALVMLGRLEGIPRSALLIYWLLALFMVGG  126
            F LY+    Y ++  +++V+++VT S +V   LV L   E+      +I W++ L+++GG
Sbjct  62   FNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGG  121

Query  127  SRL---VVRAWF-QAAIKRRGTEKPVVIYGAGTGGIGLATSLFNGRQYR--PVAFVDDNP  180
            SRL   V R  F + A+ +++T    ++ GAG GG  L   ++ +++ R  PV  VDD+ 
Sbjct  122  SRLFWRVYRRYFIDNAVEKKAT----LVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDK  177

Query  181  AKQGTVIAGLPVRKPA---ELAELIDRNRLEYILLAMPRLSRTRRREI--VAQLEPLPAH  235
             KQ   I+   V+  +   +++EL+ + R+  I++A+P LS+ R  EI  + ++E +  +
Sbjct  178  NKQKMTITE-RVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGV--E  234

Query  236  ILTIPSLADIVANRASPDevreveveDLLGRDAVGPRRELLARCIRGKTVMVTGAGGSIG  295
            ++ +P++ D+++     ++++ VEVEDLLGRD+V     L++R +  KT++VTGAGGSIG
Sbjct  235  LFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIG  294

Query  296  SELCRQILREQPTQLVLVERSEFALYAIERELQAQLQGEARRPAVQAVLANVTDLARMEM  355
            SE+CRQ+ + +P +++L+ ++E ++Y+I++EL       + R    +V+A+V + +R+  
Sbjct  295  SEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTY---GNRIEFVPVIADVQNKTRILE  351

Query  356  LMHAFRVDTVYHAAAYKHVPLVETNVLEGIDNNVFGTLHTALAAVEAGVRYFVLVSTDKA  415
            +M+ F+  +VYHAAA KHVPL+E N  E+I NN++GT + A +A E+ V  FV++STDKA
Sbjct  352  VMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKA  411

Query  416  VRPTNVMGASKRLAELVLQGLARQPDIRTRFSMVRFGNVLGSSGSVVPLFREQIRNGGPI  475
            V P+NVMGA+KR+AE+V+Q+L  + + +T F  VRFGNVLGS GSV+PLF++QI +GGP+
Sbjct  412  VNPSNVMGATKRIAEMVIQSLN-EDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPV  470

Query  476  TVTHPEVTRYFMTIPEAASLVLQAGSMAHGGEVFVLDMGEPVRIVDLARRMIRLSGLEER  535
            TVTHPE+TRYFMTIPEA+ LVLQAG++A+GGEVFVLDMG PV+IVDLA+ +IRLSG    
Sbjct  471  TVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG----  526

Query  536  NAEHPDGDIEIHFTGLRP  553
                 + DI I+F+G+RP
Sbjct  527  ---KKEEDIGIEFSGIRP  541

502) Flexsi_0362 in NC_015672


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  278 bits (1039),  Expect = 7e-76, Method: Compositional matrix adjust.
 Identities = 199/462 (44%), Positives = 311/462 (68%), Gaps = 4/462 (0%)

Query  118  LDFIISTLLICTFRISKRIYNEILFTNSSSRTKTLIVGANTQGERIARELLRDEKQVFYP  177
            +  ++  LLI   R+  R+Y   ++ N+  +  TL+VGA   G  + RE+LR +     P
Sbjct  110  ITWMMHLLLIGGSRLFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQP  169

Query  178  YCFIDNDITKKGVMISNIPVYVGY-EKIYEILDKNIIEAVIIANPSITHKEIREIVEAAK  236
               +D+D  K+ + I++     GY E I E++ K  I  +IIA P++++K + EI    +
Sbjct  170  VLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICN  229

Query  237  QHNINEIKIAPSIYQMRDRTLDVTDIRDINVEDLLARNVVQVENNKIRDMVENRSVLITG  296
             + ++ +K+ P+I ++    L+V +++ ++VEDLL+R+ V+++   I   + N+++L+TG
Sbjct  230  IEGVELFKM-PNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTG  288

Query  297  AGGSIGSEIARQIMQFSPVRIVCFEIDetelfdltnellllnngnsttVVPWVGDIRNKS  356
            AGGSIGSEI RQ+ +F P +I+ +  +  + +   ++ L    GN    VP ++D++NK+
Sbjct  289  AGGSIGSEICRQVSKFDPQKIILLG-HGENSIYSIHQELSKTYGNRIEFVPVIADVQNKT  347

Query  357  TLDNLFKKEKIDIIFHSAAYKHVPLMEYFPKEAFCTNVMGTYYLAQTASAYGVEKFINIS  416
             + ++ +  K   ++H+AA KHVPLMEY P EA+  N++GT  +A++A    V KF+ IS
Sbjct  348  RILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMIS  407

Query  417  TDKAVSPTSIMGATKRISEMILTTLDKKSSDTDFISVRFGNVLGSRGSVVPVFLNQIKQG  476
            TDKAV+P+++MGATKRI+EM++ +L+  +S T F++VRFGNVLGSRGSV+P+F NQI  G
Sbjct  408  TDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESG  467

Query  477  GPVTVTHPEIKRYFMTIPEAVLLVFQAASMGEGGEVFVLDMGEPVKIVSIAEELIKLQNL  536
            GPVTVTHPE+ RYFMTIPEA  LV+QA+++++GGEVFVLDMG PVKIV +A +LI+L   
Sbjct  468  GPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGK  527

Query  537  EPYEDIEIKFTGLRPGEKLFEEILTAEEGTNTTTHEKIYIAR  578
               EDI I F+G+RPGEKL+EE+L  +E       EKIY ++
Sbjct  528  KE-EDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGK  568

503) FNFX1_1468 in NC_017450


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  277 bits (1035),  Expect = 1e-75, Method: Compositional matrix adjust.
 Identities = 211/484 (44%), Positives = 331/484 (69%), Gaps = 19/484 (3%)

Query  36   FSLIFSEFLFYVFLISLSVYFYWYLMNR---GSADKSKTAVIYGAGAAGTKIAQE-LASA  91
            + L F   +  ++LI+ +  ++W +  R   ++A   K++++ GAG +G+ + +E L S 
Sbjct  105  LRLYFITWMMHLLLIG-GSRLFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQ  163

Query  92   GYRIKCF--VDDNETLQKRSIDSK-KVLS-KAELTKLLLSSRFDLLVIALPRNANQVVKN  147
            + R++    VDD+   QK +I  + KV +   ++  L+   R+  ++IA+P  +++ +++
Sbjct  164  DMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNE  223

Query  148  IYKEFEKDFNQIRIMPPLEEILQDENFMSQLKPVSLYDLLARDTKSLDKESISNFIKNKV  207
            I K  + +  ++  MP +E++L +E  +++LK V + DLL+RD   LD   IS  + NK 
Sbjct  224  INKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKT  283

Query  208  VLVTGAGGSIGSEIVRQCIKYQAKELVLVDHSEFNLYKITEE-----CSHFNINSVLCSV  262
            +LVTGAGGSIGSEI RQ  K++++ ++L++H+E ++Y I +E      +++++ +V+  V
Sbjct  284  ILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADV  343

Query  263  CDRKALAEVFQKYTPNIVFHAAAYKHVPLVEENISRAIRNNILGTKNAIDLAIEAGVESF  322
             ++  + EV + + P  V+HAAA KHVPL+E N   AIRNNILGTKN  + A E+ V  F
Sbjct  344  QNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKF  403

Query  323  ILISTDKAVRPTNVMGATKRVCELYLQNVDPKNTKLA--AVRFGNVLGSSGSVIPKFEEQ  380
            ++ISTDKAV P+NVMGATKR+ E+ +Q+++  N+K +  AVRFGNVLGS GSVIP F +Q
Sbjct  404  VMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQ  463

Query  381  IRNGGPVTVTHPEITRYFMLIPEACELVLQAGAIAKNSEVFVLDMGQPVKIIDLAKQFIR  440
            I +GGPVTVTHPE+TRYFM IPEA  LVLQAGA+A+ +EVFVLDMG+PVKI+DLAK++IR
Sbjct  464  IESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIR  523

Query  441  LSGR--DDIDVKIVGLRPGEKLYEELLIEDDDVSTD-YKDIFIGRRTFYDINTLNQDIES  497
            LSG+  +DI++ + G+RPGEKLYEELL  ++  + + Y  I+ G+   Y    ++  +E 
Sbjct  524  LSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVED  583

Query  498  LIKD  501
            LI++
Sbjct  584  LINN  587

504) Nhal_2428 in NC_013960


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  277 bits (1038),  Expect = 9e-76, Method: Compositional matrix adjust.
 Identities = 204/508 (41%), Positives = 343/508 (68%), Gaps = 35/508 (6%)

Query  70   GLYRGLWRFASIPDLLNIIRAVGYGALLVA------------LTLFLINRLHGVPRSIll  117
             LY+  W +AS+++L+++++AV  + ++              L L++I ++         
Sbjct  63   NLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWM---------  113

Query  118  lypifsllllAGPRLAYRMWKD-RRLTLAAGPHRKRVLILGAGRAGDLLARDML--GEAN  174
                  LLL++G+RL    W+  RR  +  + ++K  L++GAG++G +L R+ML   +  
Sbjct  114  ----MHLLLIGGSRL---FWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMR  166

Query  175  YLPVAFLDDRRDLVGRQVR-RIPVVGVLEQLPAKADEMAADVAVIAMPSANSRQMRRAVS  233
              PV  +DD ++     +  R+ V G +E++P           +IA+P+ + +++     
Sbjct  167  MQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINK  226

Query  234  LCEQAGIPYRTLPRLQDLVSGQASIKELREVAIDDLLGRDEVFLDWDRIRQslagksllv  293
            +C+  G+    +P ++D++SG+  +++L+ V ++DLLGRD V LD   I + L+ K++LV
Sbjct  227  ICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILV  286

Query  294  sggggsigselCRQLARLGPAALIVIDNNEYRLYRIEQELRQGFLA-LNLYTYLCDVGDE  352
            +G+GGSIGSE+CRQ+++++P  +I++++ E  +Y I+QEL + +   +++   + DV + 
Sbjct  287  TGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNK  346

Query  353  TSVKEILGRHLPEVVFHAAAYKHVPLLERQARQAVGNNILGTRCLAEAAQQIGCGAFILI  412
            T + E++    P  V+HAAA KHVPL+E ++++A+ NNILGT+ +AE+A++   + F++I
Sbjct  347  TRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMI  406

Query  413  STDKAVNPTSVMGASKRVAELLCQGLNRRSG-TRFIVVRFGNVLGSAGSVVPLFQAQITA  471
            STDKAVNP++VMGA+KR+AE++ Q+LN  ++ T F+ VRFGNVLGS GSV+PLF+ QI +
Sbjct  407  STDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIES  466

Query  472  GGPVTVTHPEMTRYFMTIPEACHLITQAAVIGKGGEIFVLDMGESIKITELAEEMIRLSG  531
            GGPVTVTHPEMTRYFMTIPEA +L+ QA+ +++GGE+FVLDMG ++KI +LA ++IRLSG
Sbjct  467  GGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG  526

Query  532  -QESEVEIVYTGLRPGEKLHEELFYEHE  558
             +E ++ I ++G+RPGEKL EEL+  +E
Sbjct  527  KKEEDIGIEFSGIRPGEKLYEELLNKNE  554

505) wbtA in NC_008245


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  276 bits (1032),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 213/486 (44%), Positives = 332/486 (69%), Gaps = 23/486 (4%)

Query  92   FSLIFSEFLFYVFLISLSVYFYW-----YLMNRGSVDKSKTAVIYGAGAAGTKIAQE-LA  145
            + L F   +  ++LI+ +  ++W     Y+++  +V+K K++++ GAG +G+ + +E L 
Sbjct  105  LRLYFITWMMHLLLIG-GSRLFWRVYRRYFID-NAVEK-KATLVVGAGQGGSVLIREMLR  161

Query  146  SAGYRIKCF--VDDNETLQKRSIDSK-KVLS-KAELTKLLLSSRFDLLVIALPRNANQVV  201
            S + R++    VDD+   QK +I  + KV +   ++  L+   R+  ++IA+P  +++ +
Sbjct  162  SQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRL  221

Query  202  KNIYKEFEKDFNQIRIMPPLEEILQDENFMSQLKPVSLYDLLARDTKSLDKESISNFIKN  261
            ++I K  + +  ++  MP +E++L +E  +++LK V + DLL+RD   LD   IS  + N
Sbjct  222  NEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTN  281

Query  262  KVVLVTGAGGSIGSEIVHQCIKYQAKELILVDHSEFNLYKITEE-----CSHFNINSVLC  316
            K +LVTGAGGSIGSEI +Q  K++++ +IL++H+E ++Y I +E      +++++ +V+ 
Sbjct  282  KTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIA  341

Query  317  SVCDRKALAEVFQKYTPNIVFHAAAYKHVPLVEENISRAIRNNILGTKNAIDLAIEAGVE  376
             V ++  + EV + + P  V+HAAA KHVPL+E N   AIRNNILGTKN  + A E+ V 
Sbjct  342  DVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVS  401

Query  377  SFILISTDKAVRPTNVMGATKRVCELYLQNVDPKNTKLA--AVRFGNVLGSSGSVIPKFE  434
             F++ISTDKAV P+NVMGATKR+ E+ +Q+++  N+K +  AVRFGNVLGS GSVIP F 
Sbjct  402  KFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFK  461

Query  435  EQIRKGGPVTVTHPEITRYFMLIPEACELVLQAGAIAKNSEVFVLDMGQPVKIIDLAKQF  494
            +QI  GGPVTVTHPE+TRYFM IPEA  LVLQAGA+A+ +EVFVLDMG+PVKI+DLAK++
Sbjct  462  NQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNL  521

Query  495  IRLSGR--GDIDIKIVGLRPGEKLYEELLIEEDDVSTD-YKDIFIGRRTFYDINTLNQDI  551
            IRLSG+   DI+I + G+RPGEKLYEELL  ++  + + Y  I+ G+   Y    ++  +
Sbjct  522  IRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIV  581

Query  552  ESLIKD  557
            E LI++
Sbjct  582  EDLINN  587

506) F92_03230 in NC_019537


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  276 bits (1034),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 213/486 (44%), Positives = 333/486 (69%), Gaps = 23/486 (4%)

Query  92   FSLIFSEFLFYVFLISLSVYFYW-----YLMNRGSVDKSKTAVIYGAGAAGTKIAQE-LA  145
            + L F   +  ++LI+ +  ++W     Y+++  +V+K K++++ GAG +G+ + +E L 
Sbjct  105  LRLYFITWMMHLLLIG-GSRLFWRVYRRYFID-NAVEK-KATLVVGAGQGGSVLIREMLR  161

Query  146  SAGYRIKCF--VDDNETLQKRSIDSK-KVLS-KAELTKLLLSSRFDLLVIALPRNANQVV  201
            S + R++    VDD+   QK +I  + KV +   ++  L+   R+  ++IA+P  +++ +
Sbjct  162  SQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRL  221

Query  202  KNIYKEFEKDFNQIRIMPPLEEILQDENFMSQLKPVSLYDLLARDTKSLDKESISNFIKN  261
            ++I K  + +  ++  MP +E++L +E  +++LK V + DLL+RD   LD   IS  + N
Sbjct  222  NEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTN  281

Query  262  KVVLVTGAGGSIGSEIVHQCIKYQAKELILVDHSEFNLYKITEE-----CSHFNINSVLC  316
            K +LVTGAGGSIGSEI +Q  K++++ +IL++H+E ++Y I +E      +++++ +V+ 
Sbjct  282  KTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIA  341

Query  317  SVCDRKALAEVFQKYTPNIVFHAAAYKHVPLVEENISRAIRNNILGTKNAIDLAIEAGVE  376
             V ++  + EV + + P  V+HAAA KHVPL+E N   AIRNNILGTKN  + A E+ V 
Sbjct  342  DVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVS  401

Query  377  SFILISTDKAVRPTNVMGATKRVCELYLQNVDPKNTKLA--AVRFGNVLGSSGSVIPKFE  434
             F++ISTDKAV P+NVMGATKR+ E+ +Q+++  N+K +  AVRFGNVLGS GSVIP F 
Sbjct  402  KFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFK  461

Query  435  EQIRNGGPVTVTHPEITRYFMLIPEACELVLQAGAIAKNSEVFVLDMGQPVKIIDLAKQF  494
            +QI +GGPVTVTHPE+TRYFM IPEA  LVLQAGA+A+ +EVFVLDMG+PVKI+DLAK++
Sbjct  462  NQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNL  521

Query  495  IRLSGR--GDIDIKIVGLRPGEKLYEELLIEEDDVSTD-YKDIFIGRRTFYDINTLNQDI  551
            IRLSG+   DI+I + G+RPGEKLYEELL  ++  + + Y  I+ G+   Y    ++  +
Sbjct  522  IRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIV  581

Query  552  ESLIKD  557
            E LI++
Sbjct  582  EDLINN  587

507) wbtA in NC_019551


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  276 bits (1034),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 213/486 (44%), Positives = 333/486 (69%), Gaps = 23/486 (4%)

Query  92   FSLIFSEFLFYVFLISLSVYFYW-----YLMNRGSVDKSKTAVIYGAGAAGTKIAQE-LA  145
            + L F   +  ++LI+ +  ++W     Y+++  +V+K K++++ GAG +G+ + +E L 
Sbjct  105  LRLYFITWMMHLLLIG-GSRLFWRVYRRYFID-NAVEK-KATLVVGAGQGGSVLIREMLR  161

Query  146  SAGYRIKCF--VDDNETLQKRSIDSK-KVLS-KAELTKLLLSSRFDLLVIALPRNANQVV  201
            S + R++    VDD+   QK +I  + KV +   ++  L+   R+  ++IA+P  +++ +
Sbjct  162  SQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRL  221

Query  202  KNIYKEFEKDFNQIRIMPPLEEILQDENFMSQLKPVSLYDLLARDTKSLDKESISNFIKN  261
            ++I K  + +  ++  MP +E++L +E  +++LK V + DLL+RD   LD   IS  + N
Sbjct  222  NEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTN  281

Query  262  KVVLVTGAGGSIGSEIVHQCIKYQAKELILVDHSEFNLYKITEE-----CSHFNINSVLC  316
            K +LVTGAGGSIGSEI +Q  K++++ +IL++H+E ++Y I +E      +++++ +V+ 
Sbjct  282  KTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIA  341

Query  317  SVCDRKALAEVFQKYTPNIVFHAAAYKHVPLVEENISRAIRNNILGTKNAIDLAIEAGVE  376
             V ++  + EV + + P  V+HAAA KHVPL+E N   AIRNNILGTKN  + A E+ V 
Sbjct  342  DVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVS  401

Query  377  SFILISTDKAVRPTNVMGATKRVCELYLQNVDPKNTKLA--AVRFGNVLGSSGSVIPKFE  434
             F++ISTDKAV P+NVMGATKR+ E+ +Q+++  N+K +  AVRFGNVLGS GSVIP F 
Sbjct  402  KFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFK  461

Query  435  EQIRNGGPVTVTHPEITRYFMLIPEACELVLQAGAIAKNSEVFVLDMGQPVKIIDLAKQF  494
            +QI +GGPVTVTHPE+TRYFM IPEA  LVLQAGA+A+ +EVFVLDMG+PVKI+DLAK++
Sbjct  462  NQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNL  521

Query  495  IRLSGR--GDIDIKIVGLRPGEKLYEELLIEEDDVSTD-YKDIFIGRRTFYDINTLNQDI  551
            IRLSG+   DI+I + G+RPGEKLYEELL  ++  + + Y  I+ G+   Y    ++  +
Sbjct  522  IRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIV  581

Query  552  ESLIKD  557
            E LI++
Sbjct  582  EDLINN  587

508) FTA_0626 in NC_009749


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  276 bits (1034),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 213/486 (44%), Positives = 333/486 (69%), Gaps = 23/486 (4%)

Query  92   FSLIFSEFLFYVFLISLSVYFYW-----YLMNRGSVDKSKTAVIYGAGAAGTKIAQE-LA  145
            + L F   +  ++LI+ +  ++W     Y+++  +V+K K++++ GAG +G+ + +E L 
Sbjct  105  LRLYFITWMMHLLLIG-GSRLFWRVYRRYFID-NAVEK-KATLVVGAGQGGSVLIREMLR  161

Query  146  SAGYRIKCF--VDDNETLQKRSIDSK-KVLS-KAELTKLLLSSRFDLLVIALPRNANQVV  201
            S + R++    VDD+   QK +I  + KV +   ++  L+   R+  ++IA+P  +++ +
Sbjct  162  SQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRL  221

Query  202  KNIYKEFEKDFNQIRIMPPLEEILQDENFMSQLKPVSLYDLLARDTKSLDKESISNFIKN  261
            ++I K  + +  ++  MP +E++L +E  +++LK V + DLL+RD   LD   IS  + N
Sbjct  222  NEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTN  281

Query  262  KVVLVTGAGGSIGSEIVHQCIKYQAKELILVDHSEFNLYKITEE-----CSHFNINSVLC  316
            K +LVTGAGGSIGSEI +Q  K++++ +IL++H+E ++Y I +E      +++++ +V+ 
Sbjct  282  KTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIA  341

Query  317  SVCDRKALAEVFQKYTPNIVFHAAAYKHVPLVEENISRAIRNNILGTKNAIDLAIEAGVE  376
             V ++  + EV + + P  V+HAAA KHVPL+E N   AIRNNILGTKN  + A E+ V 
Sbjct  342  DVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVS  401

Query  377  SFILISTDKAVRPTNVMGATKRVCELYLQNVDPKNTKLA--AVRFGNVLGSSGSVIPKFE  434
             F++ISTDKAV P+NVMGATKR+ E+ +Q+++  N+K +  AVRFGNVLGS GSVIP F 
Sbjct  402  KFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFK  461

Query  435  EQIRNGGPVTVTHPEITRYFMLIPEACELVLQAGAIAKNSEVFVLDMGQPVKIIDLAKQF  494
            +QI +GGPVTVTHPE+TRYFM IPEA  LVLQAGA+A+ +EVFVLDMG+PVKI+DLAK++
Sbjct  462  NQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNL  521

Query  495  IRLSGR--GDIDIKIVGLRPGEKLYEELLIEEDDVSTD-YKDIFIGRRTFYDINTLNQDI  551
            IRLSG+   DI+I + G+RPGEKLYEELL  ++  + + Y  I+ G+   Y    ++  +
Sbjct  522  IRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIV  581

Query  552  ESLIKD  557
            E LI++
Sbjct  582  EDLINN  587

509) FTL_0592 in NC_007880


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  276 bits (1034),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 213/486 (44%), Positives = 333/486 (69%), Gaps = 23/486 (4%)

Query  92   FSLIFSEFLFYVFLISLSVYFYW-----YLMNRGSVDKSKTAVIYGAGAAGTKIAQE-LA  145
            + L F   +  ++LI+ +  ++W     Y+++  +V+K K++++ GAG +G+ + +E L 
Sbjct  105  LRLYFITWMMHLLLIG-GSRLFWRVYRRYFID-NAVEK-KATLVVGAGQGGSVLIREMLR  161

Query  146  SAGYRIKCF--VDDNETLQKRSIDSK-KVLS-KAELTKLLLSSRFDLLVIALPRNANQVV  201
            S + R++    VDD+   QK +I  + KV +   ++  L+   R+  ++IA+P  +++ +
Sbjct  162  SQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRL  221

Query  202  KNIYKEFEKDFNQIRIMPPLEEILQDENFMSQLKPVSLYDLLARDTKSLDKESISNFIKN  261
            ++I K  + +  ++  MP +E++L +E  +++LK V + DLL+RD   LD   IS  + N
Sbjct  222  NEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTN  281

Query  262  KVVLVTGAGGSIGSEIVHQCIKYQAKELILVDHSEFNLYKITEE-----CSHFNINSVLC  316
            K +LVTGAGGSIGSEI +Q  K++++ +IL++H+E ++Y I +E      +++++ +V+ 
Sbjct  282  KTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIA  341

Query  317  SVCDRKALAEVFQKYTPNIVFHAAAYKHVPLVEENISRAIRNNILGTKNAIDLAIEAGVE  376
             V ++  + EV + + P  V+HAAA KHVPL+E N   AIRNNILGTKN  + A E+ V 
Sbjct  342  DVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVS  401

Query  377  SFILISTDKAVRPTNVMGATKRVCELYLQNVDPKNTKLA--AVRFGNVLGSSGSVIPKFE  434
             F++ISTDKAV P+NVMGATKR+ E+ +Q+++  N+K +  AVRFGNVLGS GSVIP F 
Sbjct  402  KFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFK  461

Query  435  EQIRNGGPVTVTHPEITRYFMLIPEACELVLQAGAIAKNSEVFVLDMGQPVKIIDLAKQF  494
            +QI +GGPVTVTHPE+TRYFM IPEA  LVLQAGA+A+ +EVFVLDMG+PVKI+DLAK++
Sbjct  462  NQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNL  521

Query  495  IRLSGR--GDIDIKIVGLRPGEKLYEELLIEEDDVSTD-YKDIFIGRRTFYDINTLNQDI  551
            IRLSG+   DI+I + G+RPGEKLYEELL  ++  + + Y  I+ G+   Y    ++  +
Sbjct  522  IRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIV  581

Query  552  ESLIKD  557
            E LI++
Sbjct  582  EDLINN  587

510) FTH_0592 in NC_008369


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  276 bits (1034),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 213/486 (44%), Positives = 333/486 (69%), Gaps = 23/486 (4%)

Query  92   FSLIFSEFLFYVFLISLSVYFYW-----YLMNRGSVDKSKTAVIYGAGAAGTKIAQE-LA  145
            + L F   +  ++LI+ +  ++W     Y+++  +V+K K++++ GAG +G+ + +E L 
Sbjct  105  LRLYFITWMMHLLLIG-GSRLFWRVYRRYFID-NAVEK-KATLVVGAGQGGSVLIREMLR  161

Query  146  SAGYRIKCF--VDDNETLQKRSIDSK-KVLS-KAELTKLLLSSRFDLLVIALPRNANQVV  201
            S + R++    VDD+   QK +I  + KV +   ++  L+   R+  ++IA+P  +++ +
Sbjct  162  SQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRL  221

Query  202  KNIYKEFEKDFNQIRIMPPLEEILQDENFMSQLKPVSLYDLLARDTKSLDKESISNFIKN  261
            ++I K  + +  ++  MP +E++L +E  +++LK V + DLL+RD   LD   IS  + N
Sbjct  222  NEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTN  281

Query  262  KVVLVTGAGGSIGSEIVHQCIKYQAKELILVDHSEFNLYKITEE-----CSHFNINSVLC  316
            K +LVTGAGGSIGSEI +Q  K++++ +IL++H+E ++Y I +E      +++++ +V+ 
Sbjct  282  KTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIA  341

Query  317  SVCDRKALAEVFQKYTPNIVFHAAAYKHVPLVEENISRAIRNNILGTKNAIDLAIEAGVE  376
             V ++  + EV + + P  V+HAAA KHVPL+E N   AIRNNILGTKN  + A E+ V 
Sbjct  342  DVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVS  401

Query  377  SFILISTDKAVRPTNVMGATKRVCELYLQNVDPKNTKLA--AVRFGNVLGSSGSVIPKFE  434
             F++ISTDKAV P+NVMGATKR+ E+ +Q+++  N+K +  AVRFGNVLGS GSVIP F 
Sbjct  402  KFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFK  461

Query  435  EQIRNGGPVTVTHPEITRYFMLIPEACELVLQAGAIAKNSEVFVLDMGQPVKIIDLAKQF  494
            +QI +GGPVTVTHPE+TRYFM IPEA  LVLQAGA+A+ +EVFVLDMG+PVKI+DLAK++
Sbjct  462  NQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNL  521

Query  495  IRLSGR--GDIDIKIVGLRPGEKLYEELLIEEDDVSTD-YKDIFIGRRTFYDINTLNQDI  551
            IRLSG+   DI+I + G+RPGEKLYEELL  ++  + + Y  I+ G+   Y    ++  +
Sbjct  522  IRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIV  581

Query  552  ESLIKD  557
            E LI++
Sbjct  582  EDLINN  587

511) NE061598_08175 in NC_017453


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  276 bits (1032),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 213/486 (44%), Positives = 332/486 (69%), Gaps = 23/486 (4%)

Query  92   FSLIFSEFLFYVFLISLSVYFYW-----YLMNRGSVDKSKTAVIYGAGAAGTKIAQE-LA  145
            + L F   +  ++LI+ +  ++W     Y+++  +V+K K++++ GAG +G+ + +E L 
Sbjct  105  LRLYFITWMMHLLLIG-GSRLFWRVYRRYFID-NAVEK-KATLVVGAGQGGSVLIREMLR  161

Query  146  SAGYRIKCF--VDDNETLQKRSIDSK-KVLS-KAELTKLLLSSRFDLLVIALPRNANQVV  201
            S + R++    VDD+   QK +I  + KV +   ++  L+   R+  ++IA+P  +++ +
Sbjct  162  SQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRL  221

Query  202  KNIYKEFEKDFNQIRIMPPLEEILQDENFMSQLKPVSLYDLLARDTKSLDKESISNFIKN  261
            ++I K  + +  ++  MP +E++L +E  +++LK V + DLL+RD   LD   IS  + N
Sbjct  222  NEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTN  281

Query  262  KVVLVTGAGGSIGSEIVHQCIKYQAKELILVDHSEFNLYKITEE-----CSHFNINSVLC  316
            K +LVTGAGGSIGSEI +Q  K++++ +IL++H+E ++Y I +E      +++++ +V+ 
Sbjct  282  KTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIA  341

Query  317  SVCDRKALAEVFQKYTPNIVFHAAAYKHVPLVEENISRAIRNNILGTKNAIDLAIEAGVE  376
             V ++  + EV + + P  V+HAAA KHVPL+E N   AIRNNILGTKN  + A E+ V 
Sbjct  342  DVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVS  401

Query  377  SFILISTDKAVRPTNVMGATKRVCELYLQNVDPKNTKLA--AVRFGNVLGSSGSVIPKFE  434
             F++ISTDKAV P+NVMGATKR+ E+ +Q+++  N+K +  AVRFGNVLGS GSVIP F 
Sbjct  402  KFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFK  461

Query  435  EQIRKGGPVTVTHPEITRYFMLIPEACELVLQAGAIAKNSEVFVLDMGQPVKIIDLAKQF  494
            +QI  GGPVTVTHPE+TRYFM IPEA  LVLQAGA+A+ +EVFVLDMG+PVKI+DLAK++
Sbjct  462  NQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNL  521

Query  495  IRLSGR--GDIDIKIVGLRPGEKLYEELLIEEDDVSTD-YKDIFIGRRTFYDINTLNQDI  551
            IRLSG+   DI+I + G+RPGEKLYEELL  ++  + + Y  I+ G+   Y    ++  +
Sbjct  522  IRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIV  581

Query  552  ESLIKD  557
            E LI++
Sbjct  582  EDLINN  587

512) wbtA in NC_006570


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  276 bits (1032),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 213/486 (44%), Positives = 332/486 (69%), Gaps = 23/486 (4%)

Query  92   FSLIFSEFLFYVFLISLSVYFYW-----YLMNRGSVDKSKTAVIYGAGAAGTKIAQE-LA  145
            + L F   +  ++LI+ +  ++W     Y+++  +V+K K++++ GAG +G+ + +E L 
Sbjct  105  LRLYFITWMMHLLLIG-GSRLFWRVYRRYFID-NAVEK-KATLVVGAGQGGSVLIREMLR  161

Query  146  SAGYRIKCF--VDDNETLQKRSIDSK-KVLS-KAELTKLLLSSRFDLLVIALPRNANQVV  201
            S + R++    VDD+   QK +I  + KV +   ++  L+   R+  ++IA+P  +++ +
Sbjct  162  SQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRL  221

Query  202  KNIYKEFEKDFNQIRIMPPLEEILQDENFMSQLKPVSLYDLLARDTKSLDKESISNFIKN  261
            ++I K  + +  ++  MP +E++L +E  +++LK V + DLL+RD   LD   IS  + N
Sbjct  222  NEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTN  281

Query  262  KVVLVTGAGGSIGSEIVHQCIKYQAKELILVDHSEFNLYKITEE-----CSHFNINSVLC  316
            K +LVTGAGGSIGSEI +Q  K++++ +IL++H+E ++Y I +E      +++++ +V+ 
Sbjct  282  KTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIA  341

Query  317  SVCDRKALAEVFQKYTPNIVFHAAAYKHVPLVEENISRAIRNNILGTKNAIDLAIEAGVE  376
             V ++  + EV + + P  V+HAAA KHVPL+E N   AIRNNILGTKN  + A E+ V 
Sbjct  342  DVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVS  401

Query  377  SFILISTDKAVRPTNVMGATKRVCELYLQNVDPKNTKLA--AVRFGNVLGSSGSVIPKFE  434
             F++ISTDKAV P+NVMGATKR+ E+ +Q+++  N+K +  AVRFGNVLGS GSVIP F 
Sbjct  402  KFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFK  461

Query  435  EQIRKGGPVTVTHPEITRYFMLIPEACELVLQAGAIAKNSEVFVLDMGQPVKIIDLAKQF  494
            +QI  GGPVTVTHPE+TRYFM IPEA  LVLQAGA+A+ +EVFVLDMG+PVKI+DLAK++
Sbjct  462  NQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNL  521

Query  495  IRLSGR--GDIDIKIVGLRPGEKLYEELLIEEDDVSTD-YKDIFIGRRTFYDINTLNQDI  551
            IRLSG+   DI+I + G+RPGEKLYEELL  ++  + + Y  I+ G+   Y    ++  +
Sbjct  522  IRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIV  581

Query  552  ESLIKD  557
            E LI++
Sbjct  582  EDLINN  587

513) wbtA in NC_009257


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  276 bits (1031),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 213/486 (44%), Positives = 333/486 (69%), Gaps = 23/486 (4%)

Query  46   FSLIFSEFLFYVFLISLSVYFYW-----YLMNRGSVDKSKTAVIYGAGAAGTKIAQE-LA  99
            + L F   +  ++LI+ +  ++W     Y+++  +V+K K++++ GAG +G+ + +E L 
Sbjct  105  LRLYFITWMMHLLLIG-GSRLFWRVYRRYFID-NAVEK-KATLVVGAGQGGSVLIREMLR  161

Query  100  SAGYRIKCF--VDDNETLQKRSIDSK-KVLS-KAELTKLLLSSRFDLLVIALPRNANQVV  155
            S + R++    VDD+   QK +I  + KV +   ++  L+   R+  ++IA+P  +++ +
Sbjct  162  SQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRL  221

Query  156  KNIYKEFEKDFNQIRIMPPLEEILQDENFMSQLKPVSLYDLLARDTKSLDKESISNFIKN  215
            ++I K  + +  ++  MP +E++L +E  +++LK V + DLL+RD   LD   IS  + N
Sbjct  222  NEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTN  281

Query  216  KVVLVTGAGGSIGSEIVHQCIKYQAKELILVDHSEFNLYKITEE-----CSHFNINSVLC  270
            K +LVTGAGGSIGSEI +Q  K++++ +IL++H+E ++Y I +E      +++++ +V+ 
Sbjct  282  KTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIA  341

Query  271  SVCDRKALAEVFQKYTPNIVFHAAAYKHVPLVEENISRAIRNNILGTKNAIDLAIEAGVE  330
             V ++  + EV + + P  V+HAAA KHVPL+E N   AIRNNILGTKN  + A E+ V 
Sbjct  342  DVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVS  401

Query  331  SFILISTDKAVRPTNVMGATKRVCELYLQNVDPKNTKLA--AVRFGNVLGSSGSVIPKFE  388
             F++ISTDKAV P+NVMGATKR+ E+ +Q+++  N+K +  AVRFGNVLGS GSVIP F 
Sbjct  402  KFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFK  461

Query  389  EQIRNGGPVTVTHPEITRYFMLIPEACELVLQAGAIAKNSEVFVLDMGQPVKIIDLAKQF  448
            +QI +GGPVTVTHPE+TRYFM IPEA  LVLQAGA+A+ +EVFVLDMG+PVKI+DLAK++
Sbjct  462  NQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNL  521

Query  449  IRLSGR--GDIDIKIVGLRPGEKLYEELLIEEDDVSTD-YKDIFIGRRTFYDINTLNQDI  505
            IRLSG+   DI+I + G+RPGEKLYEELL  ++  + + Y  I+ G+   Y    ++  +
Sbjct  522  IRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIV  581

Query  506  ESLIKD  511
            E LI++
Sbjct  582  EDLINN  587

514) TVNIR_1906 in NC_019902


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  276 bits (1033),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 214/506 (43%), Positives = 342/506 (68%), Gaps = 23/506 (4%)

Query  60   FTY-FGLYRGIWRFASVPDMMRILRAVWVGAAVTMLLLAVSGRAGSLPVAVLAAYPLFLT  118
            F+Y F LY+  W +ASV+++M +L+AV  +  VT+LL+++    +++    L  Y  F+T
Sbjct  58   FAYVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPF----LRLY--FIT  111

Query  119  -----IGLTAPRL---TYRWFKDHYRPSGNRRRALVIGAGWSGDLLVRELIKTRAY--LP  168
                 + + ++RL    YR++      + +++ +LV+GAG +G +L+RE+++++     P
Sbjct  112  WMMHLLLIGGSRLFWRVYRRY--FIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQP  169

Query  169  VGFLDDDSRKLGRDLHG-VPVLGPISELDARLRELDLHIVLIAMPGAGAALMRRIVDVAA  227
            V  +DDD  K    +   V V G + ++   ++ + +  ++IA+P  +   +  I  +  
Sbjct  170  VLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICN  229

Query  228  HYGVPCVTLPSLEKLADGrvevsrlreveledllgrevITLDDAGLHAFLEGKRVLVTGA  287
              GV    +P++E +  G +EV+ L+ VE+EDLLGR+ + LD A +   L  K +LVTGA
Sbjct  230  IEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGA  289

Query  288  GGSIGSELCRQVARYAPQCLIMLEHAEYGLYAVERDMQRLDGG-VAYAALLGDVTDPVRM  346
            GGSIGSE+CRQV+++ PQ +I+L H+E ++Y++++++ +  G  + + ++++DV +  R+
Sbjct  290  GGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRI  349

Query  347  RQVFDAHRPQVVLHAAAYKHVPLVEHNAVEGVKVNVFGTKLVADLAAAYGCEKFLLVSTD  406
             +V +  +P  V HAAA KHVPL+E N+ E+++ N++GTK VA+ A      KF+++STD
Sbjct  350  LEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTD  409

Query  407  KAVGPTNVMGASKRIAELYCQSVAEAGG-AAFIVTRFGNVMGSTGSVVPLFRRQIAEGGP  465
            KAV P+NVMGA+KRIAE+  QS+ E  + ++F+  RFGNV+GS GSV+PLF+ QI  GGP
Sbjct  410  KAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGP  469

Query  466  VTVTHPEITRYFMTIPEAVSLILQAAAMGSGGEVFVLDMGKPIRIRDLAEEMIRLSGHEP  525
            VTVTHPE+TRYFMTIPEA  L+LQA+A++ GGEVFVLDMGKP++I DLA ++IRLSG   
Sbjct  470  VTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKE  529

Query  526  GRDIELRFIGLRPGEKLHEDLFHEHE  551
              DI + F G+RPGEKL E+L++ +E
Sbjct  530  E-DIGIEFSGIRPGEKLYEELLNKNE  554

515) Smal_1651 in NC_011071


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  276 bits (1032),  Expect = 3e-75, Method: Compositional matrix adjust.
 Identities = 209/522 (41%), Positives = 343/522 (66%), Gaps = 16/522 (3%)

Query  69   GLYRGLWRFASVSDLLNIFKASFIGMVAIVLVLMWKRFDGVPMSVLVIYPFA-LSALL--  125
             LY+  W +ASVS+L++++KA   ++V  +L++     ++   + L +Y ++ +  LL  
Sbjct  63   NLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISES---PFLRLYFITWMMHLLLI  119

Query  126  GAPRLLYRAWKDYQS--LQSDSSARRVLILGAGQAAETLVRDLRRSGNF--EPVGLLDDA  181
            G++RL+   W+ Y+   +++    +  L++GAGQ++  L+R++ RS +   +PV  +DD 
Sbjct  120  GGSRLF---WRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDD  176

Query  182  PHLRGAKLQG-LPILGGLDDAPAVVRETAAKLLVIAMPSLDAAGMQRVVAICESTGVPFR  240
             + +   +   + + G ++D P +V+    K ++IA+P+L    ++ +  IC+  GV + 
Sbjct  177  KNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELF  236

Query  241  TVPKLSDILQGQSLPGQLKEVAIEDLLGRKPIMPDWNLIRGWLGGRTVMVTGAGGSIGSE  300
             +P++ D+L G+    +LK V +EDLLGR P+  D  LI   L  +T++VTGAGGSIGSE
Sbjct  237  KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSE  296

Query  301  LCRQCARHGAGRiilleiselllltiegelRRSFPD-VEVEAVLGDCGDPAVIRHALSLH  359
            +CRQ ++ ++ +IILL  +E  + +I+ EL +++ + +E  +V++D  + + I + ++  
Sbjct  297  ICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEF  356

Query  360  PVDTAFHAAAYKHVPVLERQLREAVRNNILATENVARACMEARVEHFVFISTDKAVDPVN  419
               + +HAAA KHVP++E + +EA+RNNIL+T NVA +  E+ V  FV ISTDKAV+P N
Sbjct  357  KPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSN  416

Query  420  ALGASKRYAEMICQSLDQKSTHTRFVTVRFGNVLASAGSVVPLFREQILRGGPVTVTDPE  479
             +GA+KR AEM+ QSL++ ++ T FV+VRFGNVL+S GSV+PLF++QI  GGPVTVT+PE
Sbjct  417  VMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPE  476

Query  480  VSRYFMTIPEACQLILQAAASASHGAIYTLDMGEPVPIRVLAEQMIRLAGKQPYKDVQII  539
            ++RYFMTIPEA +L+LQA+A A  G ++ LDMG PV I  LA ++IRL+GK+   D+ I 
Sbjct  477  MTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKE-EDIGIE  535

Query  540  YTGLRPGEKLHETLFYSDEDYRSTAHPKILEAGVRTFARDVV  581
            ++G+RPGEKL E L+  +E        KI  + V  + +  V
Sbjct  536  FSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEV  577

516) wbtA in NC_010677


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  275 bits (1029),  Expect = 4e-75, Method: Compositional matrix adjust.
 Identities = 212/486 (44%), Positives = 333/486 (69%), Gaps = 23/486 (4%)

Query  92   FSLIFSEFLFYVFLISLSVYFYW-----YLMNRGSVDKSKTAVIYGAGAAGTKIAQE-LA  145
            + L F   +  ++LI+ +  ++W     Y+++  +V+K K++++ GAG +G+ + +E L 
Sbjct  105  LRLYFITWMMHLLLIG-GSRLFWRVYRRYFID-NAVEK-KATLVVGAGQGGSVLIREMLR  161

Query  146  SAGYRIKCF--VDDNETLQKRSIDSK-KVLS-KAELTKLLLSSRFDLLVIALPRNANQVV  201
            S + R++    VDD+   QK +I  + KV +   ++  L+   R+  ++IA+P  +++ +
Sbjct  162  SQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRL  221

Query  202  KNIYKEFEKDFNQIRIMPPLEEILQDENFMSQLKPVSLYDLLARDTKSLDKESISNFIKN  261
            ++I K  + +  ++  MP +E++L +E  +++LK V + DLL+RD   LD   IS  + N
Sbjct  222  NEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTN  281

Query  262  KVVLVTGAGGSIGSEIVHKCIKYQAKELILVDHSEFNLYKITEE-----CSHFNINSVLC  316
            K +LVTGAGGSIGSEI ++  K++++ +IL++H+E ++Y I +E      +++++ +V+ 
Sbjct  282  KTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIA  341

Query  317  SVCDRKALAEVFQKYTPNIVFHAAAYKHVPLVEENISRAIRNNILGTKNAIDLAIEAGVE  376
             V ++  + EV + + P  V+HAAA KHVPL+E N   AIRNNILGTKN  + A E+ V 
Sbjct  342  DVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVS  401

Query  377  SFILISTDKAVRPTNVMGATKRVCELYLQNVDPKNTKLA--AVRFGNVLGSSGSVIPKFE  434
             F++ISTDKAV P+NVMGATKR+ E+ +Q+++  N+K +  AVRFGNVLGS GSVIP F 
Sbjct  402  KFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFK  461

Query  435  EQIRNGGPVTVTHPEITRYFMLIPEACELVLQAGAIAKNSEVFVLDMGQPVKIIDLAKQF  494
            +QI +GGPVTVTHPE+TRYFM IPEA  LVLQAGA+A+ +EVFVLDMG+PVKI+DLAK++
Sbjct  462  NQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNL  521

Query  495  IRLSGR--GDIDIKIVGLRPGEKLYEELLIEEDDVSTD-YKDIFIGRRTFYDINTLNQDI  551
            IRLSG+   DI+I + G+RPGEKLYEELL  ++  + + Y  I+ G+   Y    ++  +
Sbjct  522  IRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIV  581

Query  552  ESLIKD  557
            E LI++
Sbjct  582  EDLINN  587

517) wbtA in NC_016937


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  275 bits (1029),  Expect = 4e-75, Method: Compositional matrix adjust.
 Identities = 213/486 (44%), Positives = 332/486 (69%), Gaps = 23/486 (4%)

Query  36   FSLIFSEFLFYVFLISLSVYFYW-----YLMNRGSVDKSKTAVIYGAGAAGTKIAQE-LA  89
            + L F   +  ++LI+ +  ++W     Y+++  +V+K K++++ GAG +G+ + +E L 
Sbjct  105  LRLYFITWMMHLLLIG-GSRLFWRVYRRYFID-NAVEK-KATLVVGAGQGGSVLIREMLR  161

Query  90   SAGYRIKCF--VDDNETLQKRSIDSK-KVLS-KAELTKLLLSSRFDLLVIALPRNANQVV  145
            S + R++    VDD+   QK +I  + KV +   ++  L+   R+  ++IA+P  +++ +
Sbjct  162  SQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRL  221

Query  146  KNIYKEFEKDFNQIRIMPPLEEILQDENFMSQLKPVSLYDLLARDTKSLDKESISNFIKN  205
            ++I K  + +  ++  MP +E++L +E  +++LK V + DLL+RD   LD   IS  + N
Sbjct  222  NEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTN  281

Query  206  KVVLVTGAGGSIGSEIVHQCIKYQAKELILVDHSEFNLYKITEE-----CSHFNINSVLC  260
            K +LVTGAGGSIGSEI +Q  K++++ +IL++H+E ++Y I +E      +++++ +V+ 
Sbjct  282  KTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIA  341

Query  261  SVCDRKALAEVFQKYTPNIVFHAAAYKHVPLVEENISRAIRNNILGTKNAIDLAIEAGVE  320
             V ++  + EV + + P  V+HAAA KHVPL+E N   AIRNNILGTKN  + A E+ V 
Sbjct  342  DVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVS  401

Query  321  SFILISTDKAVRPTNVMGATKRVCELYLQNVDPKNTKLA--AVRFGNVLGSSGSVIPKFE  378
             F++ISTDKAV P+NVMGATKR+ E+ +Q+++  N+K +  AVRFGNVLGS GSVIP F 
Sbjct  402  KFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFK  461

Query  379  EQIRKGGPVTVTHPEITRYFMLIPEACELVLQAGAIAKNSEVFVLDMGQPVKIIDLAKQF  438
            +QI  GGPVTVTHPE+TRYFM IPEA  LVLQAGA+A+ +EVFVLDMG+PVKI+DLAK++
Sbjct  462  NQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNL  521

Query  439  IRLSGR--GDIDIKIVGLRPGEKLYEELLIEEDDVSTD-YKDIFIGRRTFYDINTLNQDI  495
            IRLSG+   DI+I + G+RPGEKLYEELL  ++  + + Y  I+ G+   Y    ++  +
Sbjct  522  IRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIV  581

Query  496  ESLIKD  501
            E LI++
Sbjct  582  EDLINN  587

518) wbtA in NC_016933


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  275 bits (1029),  Expect = 4e-75, Method: Compositional matrix adjust.
 Identities = 213/486 (44%), Positives = 332/486 (69%), Gaps = 23/486 (4%)

Query  36   FSLIFSEFLFYVFLISLSVYFYW-----YLMNRGSVDKSKTAVIYGAGAAGTKIAQE-LA  89
            + L F   +  ++LI+ +  ++W     Y+++  +V+K K++++ GAG +G+ + +E L 
Sbjct  105  LRLYFITWMMHLLLIG-GSRLFWRVYRRYFID-NAVEK-KATLVVGAGQGGSVLIREMLR  161

Query  90   SAGYRIKCF--VDDNETLQKRSIDSK-KVLS-KAELTKLLLSSRFDLLVIALPRNANQVV  145
            S + R++    VDD+   QK +I  + KV +   ++  L+   R+  ++IA+P  +++ +
Sbjct  162  SQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRL  221

Query  146  KNIYKEFEKDFNQIRIMPPLEEILQDENFMSQLKPVSLYDLLARDTKSLDKESISNFIKN  205
            ++I K  + +  ++  MP +E++L +E  +++LK V + DLL+RD   LD   IS  + N
Sbjct  222  NEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTN  281

Query  206  KVVLVTGAGGSIGSEIVHQCIKYQAKELILVDHSEFNLYKITEE-----CSHFNINSVLC  260
            K +LVTGAGGSIGSEI +Q  K++++ +IL++H+E ++Y I +E      +++++ +V+ 
Sbjct  282  KTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIA  341

Query  261  SVCDRKALAEVFQKYTPNIVFHAAAYKHVPLVEENISRAIRNNILGTKNAIDLAIEAGVE  320
             V ++  + EV + + P  V+HAAA KHVPL+E N   AIRNNILGTKN  + A E+ V 
Sbjct  342  DVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVS  401

Query  321  SFILISTDKAVRPTNVMGATKRVCELYLQNVDPKNTKLA--AVRFGNVLGSSGSVIPKFE  378
             F++ISTDKAV P+NVMGATKR+ E+ +Q+++  N+K +  AVRFGNVLGS GSVIP F 
Sbjct  402  KFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFK  461

Query  379  EQIRKGGPVTVTHPEITRYFMLIPEACELVLQAGAIAKNSEVFVLDMGQPVKIIDLAKQF  438
            +QI  GGPVTVTHPE+TRYFM IPEA  LVLQAGA+A+ +EVFVLDMG+PVKI+DLAK++
Sbjct  462  NQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNL  521

Query  439  IRLSGR--GDIDIKIVGLRPGEKLYEELLIEEDDVSTD-YKDIFIGRRTFYDINTLNQDI  495
            IRLSG+   DI+I + G+RPGEKLYEELL  ++  + + Y  I+ G+   Y    ++  +
Sbjct  522  IRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIV  581

Query  496  ESLIKD  501
            E LI++
Sbjct  582  EDLINN  587

519) THA_1627 in NC_011653


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  275 bits (1027),  Expect = 6e-75, Method: Compositional matrix adjust.
 Identities = 200/464 (44%), Positives = 319/464 (69%), Gaps = 18/464 (3%)

Query  103  ITFLGSFMFILTGRL---LYQ-FFVQTSKNHTRKFLIVGTENMAVSLAEDI---EKNKVG  155
            IT +  +++I  +RL   +Y+ +F++ +  + +  L+VG+ + +  L  ++   +  ++ 
Sbjct  110  ITWMMHLLLIGGSRLFWRVYRRYFIDNA-VEKKATLVVGAGQGGSVLIREMLRSQDMRMQ  168

Query  156  EIVAFVDDDKSKIGRTIMGK-KVYGPISKIGELSKVIDFDELIIAIPGITSNKVNQivdl  214
             ++A VDDDK+K   TI  + KV G +  I EL K + +  +IIAIP ++ +++N+I  +
Sbjct  169  PVLA-VDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKI  227

Query  215  vdlskvkvkiiPSFEEILSEKVKIDDIRNISLEDIIGRKPIDVNLQEIGEYLKDKVVLVT  274
             ++  V +  +P++E++LS  + +++++++ +ED++GR P+++++  I+  L +K +LVT
Sbjct  228  CNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVT  287

Query  275  GAGGSIGSELCRQIVIQKPRSLILLGRGENSIYEISEELNEKYAD-VEIFRAIGDVENRE  333
            GAGGSIGSE+CRQ+    P+ +ILLG+GENSIY I +EL+  Y++ +E+   I+DV+N+ 
Sbjct  288  GAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKT  347

Query  334  WMEKIFEKFKPDIVFHAAAHKHVPLMEENPYEAIRVNVFGTINLADISCKFNVEKFVFIS  393
            ++  + + FKP  V+HAAAHKHVPLME NP EAIR N++GT N+A+ +   +V KFV IS
Sbjct  348  RILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMIS  407

Query  394  TDKAVNPTSFMGLSKRIAELYILS---KKCSTRFSIVRFGNVIGSRGSVLWKFKKQIEQG  450
            TDKAVNP++ MG +KRIAE+ I S    +  T F  VRFGNV+GSRGSV+  FK+QIE G
Sbjct  408  TDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESG  467

Query  451  KPVTITHPDMRRYFMSIPEAVSLVLESTIL--NGNLFVLDMGEQIPIEEIARKLGKILGK  508
             PVT+THP+M RYFM+IPEA  LVL++  L   G++FVLDMG  + I ++A++L ++ GK
Sbjct  468  GPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGK  527

Query  509  --DNIEIVYTGIRRGEKLYEELFYPYEVANRTKHPKIFSVKYDK  550
              ++I I ++GIR GEKLYEEL+   E+  +    KI+  K D 
Sbjct  528  KEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDH  571

520) Mmwyl1_0813 in NC_009654


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  274 bits (1026),  Expect = 8e-75, Method: Compositional matrix adjust.
 Identities = 200/475 (43%), Positives = 307/475 (65%), Gaps = 47/475 (9%)

Query  104  YFFEANIPRTVPIIYFPFLVMLCGGSRVLIRGLLTQAPQKGSESVLVFGAGSTGRQLTLA  163
            YF++  + +   ++     V    G+ VLIR +L ++ +   ++VL  + +   +++T++
Sbjct  132  YFIDNAVEKKATLV-----VGAGQGGSVLIREML-RSQDMRMQPVLAVDDDKNKQKMTIT  185

Query  164  LRQASSYRVKGFIDRDESLANTIIQGVPVYNVDKIGELIEKYDIEKVLLAIPKASRSERK  223
             R     +V+G+++    L + +     +  +  +++        K L  I K    E  
Sbjct  186  ERV----KVQGYVEDIPELVKKFRIKKIIIAIPTLSQ--------KRLNEINKICNIE--  231

Query  224  QVIEQLMPYPVEVLTVPDFNDIVTGKAKVSELQDVAVDDLLGRDVVEPVASLMQANISGK  283
                      VE++ +P+++D+++G   V++L+ V V+DLLGRD VE   +L+  +++ K
Sbjct  232  ---------GVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNK  282

Query  284  VVMVTGAGGSIGSELCRQIIAQQPSTLIVFDVSEYAVYQIDKELNEILEQESFNIKIVPL  343
             ++VTGAGGSIGSE+CRQ+   +P  +I+++ +E ++Y I++EL+    +    I +VP+
Sbjct  283  TILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGN---RIEFVPV  339

Query  344  IGSVQRINRLASTMKAFGVNTVYHAAAYKHVPLVEYNVVEGVRNNAFGTYYSAKAAIESG  403
            I+ VQ   R+   M+ F   +VYHAAA KHVPL+EYN  E++RNN +GT   A +A E+ 
Sbjct  340  IADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGE  399

Query  404  VESFVLISTDKAVRPTNVMGATKRMaelglqalaeaeakkaakqekFTRFCMVRFGNVLG  463
            V  FV+ISTDKAV P+NVMGATKR+AE+ +Q+L E ++K        T F  VRFGNVLG
Sbjct  400  VSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSK--------TSFVAVRFGNVLG  451

Query  464  SSGSVIPVFKKQILENQPITVTHPDIIRYFMTIPEAAQLVIQAGAMGKGGDVFVLDMGEP  523
            S GSVIP+FK+QI    P+TVTHP++ RYFMTIPEA++LV+QAGA+++GG+VFVLDMG P
Sbjct  452  SRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKP  511

Query  524  VKIVDLAKNLIRLSGLEVKSDANPNGDIEIQFTGLRPGEKLFEELLIGDNVKETQ  578
            VKIVDLAKNLIRLSG       + + DI I+F+G+RPGEKL+EELL  +++   Q
Sbjct  512  VKIVDLAKNLIRLSG-------KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQ  559

521) Reut_B5376 in NC_007348


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  274 bits (1026),  Expect = 8e-75, Method: Compositional matrix adjust.
 Identities = 195/471 (42%), Positives = 318/471 (68%), Gaps = 35/471 (7%)

Query  158  GAGEAGAQLATAMRASSGHR--PVCFFDDDISLDKKIFSD---LPVYFSDNMKDQINQLG  212
            GAG++G+ L   M  S + R  PV   DDD + +K  +++   +  Y  +++ + ++++ 
Sbjct  147  GAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGY-VEDIPELVKKFR  205

Query  213  INEVVLAVPSLSIKRRKQIVDKL-HRYAVSVRTLPTLLELVDRKITMQSVRDIKIEDLLG  271
            I+ +++A+P+LS KR ++I +K+ +  +V +  +P + +++   + +++++ + +EDLLG
Sbjct  206  IKKIIIAIPTLSQKRLNEI-NKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLG  264

Query  272  RDIVPPREELFARCTHRKVVMVTGAGGSIGSELCRQIASRQPSKLILFDHSEFALYVIEQ  331
            RD V     L++R    K ++VTGAGGSIGSE+CRQ++  +P K+IL++H+E ++Y I+Q
Sbjct  265  RDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQ  324

Query  332  ELRRTFPE-LQIVARIGSVCDVEAVAAAMRGQRIDSIYHAAAYKHVPMVEANMPEGIRNN  390
            EL +T+ + +++V+ I+ V +   +   M   +  ++YHAAA KHVP++E N  E+IRNN
Sbjct  325  ELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNN  384

Query  391  VLGSATIANMADHFGVKTCVLISTDKAVRPTNIMGASKRIAELAFQAAASRPNTSTTFSM  450
            +LG+  +A+ A +  V   V+ISTDKAV P+N+MGA+KRIAE+ +Q+     N+ T+F  
Sbjct  385  ILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNE-DNSKTSFVA  443

Query  451  VRFGNVLGSSGSVVPLFRKQIRAGGPVTITHPDVIRFFMLIPEAAQLVIQAGAMAQGGEV  510
            VRFGNVLGS GSV+PLF++QI +GGPVT+THP++ R+FM IPEA++LV+QAGA+AQGGEV
Sbjct  444  VRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEV  503

Query  511  FVLDMGKPVRITDLARTMIEMSGLVEKTRKNPAGDIEIKFVGLRPGEKLYEELLIGGEVT  570
            FVLDMGKPV+I DLA+ +I +SG       +   DI I F G+RPGEKLYEELL   E+ 
Sbjct  504  FVLDMGKPVKIVDLAKNLIRLSG-------KKEEDIGIEFSGIRPGEKLYEELLNKNEIH  556

Query  571  PSEHERIMCSHEPFLEESEYREKLGKLLAACESRDDLAIQLAVQNLVPEYA  621
            P         ++ +  E  YR K++  + +        ++L V++L+ +++
Sbjct  557  P---------QQVY--EKIYRGKVDHYIKT-------EVDLIVEDLINNFS  589

522) ABLL_0825 in NC_017192


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  273 bits (1021),  Expect = 2e-74, Method: Compositional matrix adjust.
 Identities = 210/486 (44%), Positives = 321/486 (67%), Gaps = 30/486 (6%)

Query  99   FIDLIFYTFIVNILVY--------VYKYYHTVGRNQKTKKLVIYGAGKAGLQLQREFLNS  150
            F+ L F T ++++L+         VY+ Y      +K   LV+ GAG++G  L RE L S
Sbjct  104  FLRLYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEKKATLVV-GAGQGGSVLIREMLRS  162

Query  151  E---YHLVCFIDDDEILHHRSIDG---ISIYSQEKYCSLFQEEKFDMMVIAMPSVSKDRI  204
            +    + V  +DDD   +  +I     +  Y ++    L +  ++  ++IA+P++S+ R+
Sbjct  163  QDMRMQPVLAVDDDKNKQKMTITERVKVQGYVED-IPELVKKFRIKKIIIAIPTLSQKRL  221

Query  205  KNIYGTMQGNFDRIKI--LPSIQNILKKEEFTKQLKDISVEDLLARHPKDLDKKQIENFI  262
            ++I      N++ + +  +P+I+++L  E   ++LK + VEDLL+R+P +LD   I   +
Sbjct  222  NEI--NKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISREL  279

Query  263  KDKVVLITGAGGSIGSEISRQCKAYGAKQLILLDHSEFNLYSIMEELKDE-----NVIPV  317
             +K +L+TGAGGSIGSEI RQ   ++++++ILL+H+E ++YSI +EL        + +PV
Sbjct  280  TNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPV  339

Query  318  MQTVRNFGFIENTFEKYKPQIVIHAAAYKHVPLVEHNILEGISNNIIGTKNCIDLSIKYG  377
            +  V+N   I +  + +KP  V HAAA KHVPL+E N  E+I NNI+GTKN  + +    
Sbjct  340  IADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGE  399

Query  378  VEKFVLISTDKAVRPTNVMGTTKRICELYAQNVNAEN--TEIVAVRFGNVLGSSGSVIPK  435
            V KFV+ISTDKAV P+NVMG+TKRI E+  Q++N +N  T +VAVRFGNVLGS GSVIP 
Sbjct  400  VSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPL  459

Query  436  FKSQIEQGKNITVTHPDITRYFMLIPEACELVLQAASIGKGGEIFILDMGEPIKIVDLAK  495
            FK+QIE G  +TVTHP++TRYFM IPEA  LVLQA+++++GGE+F+LDMG P+KIVDLAK
Sbjct  460  FKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAK  519

Query  496  KMIELSGR--NEINIEFCGLRPGEKLYEELLINDSDQKTK-YESITVASPTNFDINKLNQ  552
            ++I LSG+  ++I IEF G+RPGEKLYEELL ++  +  + YE I  +   ++    ++ 
Sbjct  520  NLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDL  579

Query  553  KIDDLL  558
             ++DL+
Sbjct  580  IVEDLI  585

523) Dd586_0670 in NC_013592


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  273 bits (1021),  Expect = 2e-74, Method: Compositional matrix adjust.
 Identities = 192/453 (43%), Positives = 319/453 (71%), Gaps = 21/453 (4%)

Query  123  LSLGGPRVLIRTFYYHYYKR---QKPNVFIYGAGATGRDLLYALIQGDEF--HPVIILDD  177
            L +GG+R L++  Y +Y+     +K   ++ GAG  G  L+  ++++++   +PV+ +DD
Sbjct  117  LLIGGSR-LFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDD  175

Query  178  DESKAGQIICG-IRVH-HSSEFEKLTPLYQPVKLLLAINNIKKGQRLRLLEKLSHW-PIE  234
            D +K    I   ++V+    ++  L   ++  K+++AI  + + +RL  ++K+ +   +E
Sbjct  176  DKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQ-KRLNEINKICNIEGVE  234

Query  235  VQSVPSVEDIAAGRAFASEIRDLDVADLLGRAPVDPDETLLAQNIRGKSVMVTGAGGSIG  294
            +  +P++ED+ +G    ++++ ++V DLLGR PV+ D +L+++++  K+++VTGAGGSIG
Sbjct  235  LFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIG  294

Query  295  SELCRQILSQHPQtlvllelneynlytIDQELQNIKQHLKLDTQIVAALGSVQKQNRVQR  354
            SE+CRQ+   +PQ ++LL   E ++Y+I+QEL +   +     ++V+ ++ VQ++ R+  
Sbjct  295  SEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGN---RIEFVPVIADVQNKTRILE  351

Query  355  LIQAHQVETIYHAAAYKHVPLVESNVIEGIRNNVFGTLACAEAAIQAGVRNFTLISTDKA  414
            +++  +  ++YHAAA KHVPL+E N  E+IRNN++GT   AE+A ++ V +F +ISTDKA
Sbjct  352  VMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKA  411

Query  415  VRPTNIMGTSKRMAELVLQALADKQDKTLFTMVRFGNVLGSSGSVVPLFKQQIRRGGPVT  474
            V P+N+MG++KR+AE+V+Q+L + + KT F  VRFGNVLGS GSV+PLFK+QI  GGPVT
Sbjct  412  VNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVT  471

Query  475  VTHPDIIRYFMLIPEAAQLVIQAATMGKNGQVFVLDMGEPVKILDLARRMIHLMGMKEYI  534
            VTHP++ RYFM IPEA++LV+QA+++++ G+VFVLDMG PVKI+DLA+ +I+L G K   
Sbjct  472  VTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKK---  528

Query  535  EGYNEEGDIAIKFTGLRPGEKLYEELLIGGNVE  567
                 E DI+I F+G+RPGEKLYEELL   +++
Sbjct  529  -----EEDIGIEFSGIRPGEKLYEELLNKNEIH  556

524) Rmet_2723 in NC_007973


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  273 bits (1021),  Expect = 2e-74, Method: Compositional matrix adjust.
 Identities = 224/544 (42%), Positives = 357/544 (66%), Gaps = 45/544 (8%)

Query  69   GLYRAIFRYTGMAALASTAKAVGlygvlffsallllklDGVPRSIGLIQPMLFLLLVGAS  128
             LY+    Y++++ L S  KAV    V+ +  + LL  ++    + +I  M+ LLL+G+S
Sbjct  63   NLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITWMMHLLLIGGS  122

Query  129  R----ALARFWLAGTAAKVRAHEGRLLIYGAGDAGVQTASALAVTHQFVL---LGFIDDD  181
            R       R+ +  +  K  +     L+ GAG++G      +  +++  +   L+ +DDD
Sbjct  123  RLFWRVYRRYFIDNAVEKKAT-----LVVGAGQGGSVLIREMLRSQDMRMQPVLA-VDDD  176

Query  182  RAKIGRTING-LDIFG-PDDVPEAVERMGVTDILLAIPSMGRAQRNAVIDKLRALP-VHV  238
            + K   TI   + + G  +D+PE V +  +  I++AIP++++ +R   I+K+  +  V++
Sbjct  177  KNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQ-KRLNEINKICNIEGVEL  235

Query  239  RTLPGMVDLASGRVTIRDLQELDIEDLLGRAPVPPdaallaknladkTVLVTGAGGSIGS  298
              +P + D+ SG + + +L+ +++EDLLGR PV  D AL++++L++KT+LVTGAGGSIGS
Sbjct  236  FKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGS  295

Query  299  ELCRQIMLERPRRLVLVEHNEFGLYSIHQELERLRDEHRLQTEVVPLLASVVNLRRLREI  358
            E+CRQ+    P++++L+ H E ++YSIHQEL +  +++    E VP++A V N  R+ E+
Sbjct  296  EICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNR---IEFVPVIADVQNKTRILEV  352

Query  359  CGLYRPATVYHAAAYKHVPLVECNAAEGVMNNVFGTLNMARAAMESQAEYFVLVSTDKAV  418
               ++P +VYHAAA KHVPL+E N+ E++ NN++GT N+A +A E++   FV++STDKAV
Sbjct  353  MNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAV  412

Query  419  RPTNVMGASKRMAELVLQAMAARQSVDFGLLDVESEEAVPNRTVFAMVRFGNVLGSSGSV  478
             P+NVMGA+KR+AE+V+Q++   +S                +T F  VRFGNVLGS GSV
Sbjct  413  NPSNVMGATKRIAEMVIQSLNEDNS----------------KTSFVAVRFGNVLGSRGSV  456

Query  479  VPLFRRQLLEGGPLTVTHEKVTRYFMTIPEAAQLVLQAGAMAHGGEVFVLDMGQPVKIMD  538
            +PLF+ Q+  GGP+TVTH  +TRYFMTIPEA++LVLQAGA+A+GGEVFVLDMG+PVKI+D
Sbjct  457  IPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVD  516

Query  539  LARRMVQLSGMTVCDDQHPDGDIEIRVTGLRPGEKLYEELLIGDN-PEGTAHERIMKAR-  596
            LA+ +++LSG         + DI I  +G+RPGEKLYEELL  ++       E+I +++ 
Sbjct  517  LAKNLIRLSGKK-------EEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKV  569

Query  597  EDYV  600
            ++Y+
Sbjct  570  DHYI  573

525) Echvi_0060 in NC_019904


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  272 bits (1017),  Expect = 4e-74, Method: Compositional matrix adjust.
 Identities = 187/439 (43%), Positives = 307/439 (70%), Gaps = 10/439 (2%)

Query  122  RLFVKEFYGMYLKKKQPQKHIVIFGAGEAGR-LSKTVLGSQVGSNQKIHAFLDDDMQKAG  180
            RLF + +   ++ +   +K  ++ GAG++G  L + +L SQ    Q + A +DDD +K  
Sbjct  123  RLFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLA-VDDDKNKQK  181

Query  181  GSIGGIPVYHG-LDRLKTLQRDHAISDLLISIMCISPRRKKEIIEECLQLGIKVSVVPSI  239
             +I      +G ++ +  L +   I  ++I+I  +S +R +EI   C   G+ +  +P+I
Sbjct  182  MTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNI  241

Query  240  DEWVKGGFNVGKIRQIKIEDLLSRPEISLDNPAVFSQISDRVVMVTGAAGSIGSELCRKI  299
            ++ + G ++V +++++ +EDLL+R  + LD + +  +++++ ++VTGA+GSIGSE+CR++
Sbjct  242  EDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQV  301

Query  300  IEHKPALLIMVDKAESALYDVEQEFRSG-RWKSQIKPILADIRDAKKMDRIFKMYKPAIV  358
                P  +I+++ +E+++Y ++QE+      + ++ P++AD+++  ++  + + +KP  V
Sbjct  302  SKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAV  361

Query  359  YHAAAYKHVPMMENYPEEAVTSNVLATKNLADLSVLHNVSQFVFVSTDKAVNPTNVMGAS  418
            YHAAA KHVP+ME  P+EA+ +N+L+TKN+A+ +   +VS+FV +STDKAVNP+NVMGA+
Sbjct  362  YHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGAT  421

Query  419  KRIAEIYIQALSRYLDVEKGQVTKFAITRFGNVLGSNGSVIPLFKKQIEQGGPVMVTDPN  478
            KRIAE+ IQ+L+     E    T F   RFGNVLGS GSVIPLFK+QIE GGPV VT+P+
Sbjct  422  KRIAEMVIQSLN-----EDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPE  476

Query  479  ISRYFMTISEACQLILEAGAMSTGNEIFIFDMGEPVKILDLAKKMIQLSDKKIGEDIKIV  538
            ++RYFMTI+EA +L+L+AGA++ G E+F++DMG PVKI+DLAK++I+LS+KK  EDI I 
Sbjct  477  MTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKK-EEDIGIE  535

Query  539  FTGLREGEKLHEELLCHSE  557
            F+G+R GEKL EELL  +E
Sbjct  536  FSGIRPGEKLYEELLNKNE  554

526) Tlet_1006 in NC_009828


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  271 bits (1014),  Expect = 6e-74, Method: Compositional matrix adjust.
 Identities = 197/439 (45%), Positives = 296/439 (68%), Gaps = 8/439 (1%)

Query  110  MILIASRFFWQ---WLNTVPPSAGKRVLIVGAGSAGTMLLEDF--EHRPQLGKVVGFIDD  164
            +++ +SR+FW+   +     +   K  L+VGAG +G++L+ +    +  ++  V++  DD
Sbjct  117  LLIGGSRLFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDD  176

Query  165  SPRKIGRKIHGVPVYGPADRAMEIVEMLKIDEVIIAIPSATAEQMRRIISLINPRRVKIR  224
              ++     + V V G  +   E+V  ++I  +IIAIP+ +  ++  I  + N   V + 
Sbjct  177  KNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELF  236

Query  225  TLPGIYELTDGQARAGSLRELKIEDLLGREEVKVDLQQIKSYINGKRIMVTGAGGSIGSE  284
             +P I ++  G+    +L+ + +EDLLGR+ V +D+  I   +  K I+VTGAGGSIGSE
Sbjct  237  KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSE  296

Query  285  LCRQLSKLEPSTLILLGKGENSIYKIDEEL-RVENPSVERIRVIADISDPTRMEQVFRLT  343
            +CRQ+SK++P  +ILLG GENSIY I++EL +     +E + VIAD+ + TR+ +V    
Sbjct  297  ICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEF  356

Query  344  RPQIVFHAAAHKHVPLMEENPYEALKVNTLGTKIVAELCCKFEAEKMIFISTDKAVNPSS  403
            +P  V+HAAAHKHVPLME NP EA++ N LGTK VAE     E  K + ISTDKAVNPS+
Sbjct  357  KPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSN  416

Query  404  IMGATKRLAELLLLSMNQG-CKTNFVIVRFGNVIGSRGSVVPKFMDQISKGGPVTVTDQR  462
            +MGATKR+AE+++ S+N++  KT+FV VRFGNV+GSRGSV+P F +QI  GGPVTVT+  
Sbjct  417  VMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPE  476

Query  463  MVRYFMSLSEAVSLVLQAGSFGTNKDLFVLDMGKPISIDELARTMILLNGLIPEQDIKIV  522
            M RYFM+++EA  LVLQAG+++   ++FVLDMGKP+ I +LA+ +I L+G   E+DI I 
Sbjct  477  MTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIGIE  535

Query  523  YTGSRSGEKMSEELFYEDE  541
            ++G R+GEK+ EEL+  +E
Sbjct  536  FSGIRPGEKLYEELLNKNE  554

527) CPF_0910 in NC_008261


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  267 bits (999),  Expect = 1e-72, Method: Compositional matrix adjust.
 Identities = 233/492 (48%), Positives = 355/492 (73%), Gaps = 15/492 (3%)

Query  58   IFCF-FNLYKNIWHMAGISECIRCliassissillilYKFIFNMDVTIV--FLINSSILI  114
            IF + FNLY   W+ A++SE +  L A + S ++ +L   ++  +  ++  ++I      
Sbjct  57   IFAYVFNLYHRAWEYASVSELMSVLKAVTSSIVVTLLLVSLLISESPFLRLYFITW----  112

Query  115  CMFSLLTRMSIRIFRKIYFPYKLESNL-RKNVLIVGAGHCGRIVIDEM--NKNNKFNPIG  171
             M  LL   + R+F+++Y  Y +++ + +K  L+VGAG+ G ++I EM  +++ + +P+ 
Sbjct  113  -MMHLLLIGGSRLFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVL  171

Query  172  IVDDDLNK-KGTFLNGVKVLGNRDDIEKICKRIKVDiiliaisnlssnDKDEIIKRCENT  230
             VDDD NK K T+ + VKV G  +DI  + K++++  I+IAI+ LS +  +EI K C+  
Sbjct  172  AVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIE  231

Query  231  KIKVKIIPSIYDLIDGNVKLTNirdidlrdllgrdETRLDKEEVNNYIKEKivivtgggg  290
             + +  +P+I D++ G++ + N++ +++ DLLGRD   LD   ++  + +K ++VTG+GG
Sbjct  232  GVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGG  291

Query  291  sigsELCRQIAVFNPKKLIILDIyenyayelenelKRNFKN-LDLEVIIASIRDKSRLKK  349
            SIGSE+CRQ++ F+P+K+I+L+  EN  Y +++EL + + N +++  +IA +++K+R+  
Sbjct  292  SIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILE  351

Query  350  IFDKYKPDLIFHAAAHKHVPLMENNPEEAIKNNVLGTLNVAECADEFNLEKFVFISTDKA  409
            + + +KP  ++HAAAHKHVPLME NP+EAI+NN+LGT NVAE A E ++ KFV ISTDKA
Sbjct  352  VMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKA  411

Query  410  VNPTNIMGATKRIGEMIIQAMNE-VSKTDFVAVRFGNVLGSNGSVIPLFIEQIKNGGPVT  468
            VNP+N+MGATKRI+EM+IQ++NE  SKT FVAVRFGNVLGS GSVIPLF +QI +GGPVT
Sbjct  412  VNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVT  471

Query  469  LTHKDITRYFMLIPEAAQLVLQAGAYAKGGEIFVLDMGKPVKIYDLTEKLIRLSGFEPNK  528
            +TH ++TRYFM IPEA++LVLQAGA A+GGE+FVLDMGKPVKI DL+ +LIRLSG   + 
Sbjct  472  VTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEE  530

Query  529  DIQIKIVGLRPG  540
            DI I + G+RPG
Sbjct  531  DIGIEFSGIRPG  542

528) CTN_1131 in NC_011978


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  267 bits (999),  Expect = 1e-72, Method: Compositional matrix adjust.
 Identities = 203/470 (44%), Positives = 311/470 (67%), Gaps = 21/470 (4%)

Query  104  FATFLGSMILIVLSRITWQWLTLSRK---GRPTEKR-IMIIGAGDAGVSILEEF--EKHP  157
            F T +  ++LI  SR+ W+   + R+   + + EK+  +++GAG++G  ++ E    ++ 
Sbjct  109  FITWMMHLLLIGGSRLFWR---VYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDM  165

Query  158  HLGKVVAFMDDSPRKIGRRVRGIPVFGPIDRTMEYVERLGVDEVIVAIPSATKQQMERIL  217
            ++  V+A  DD  ++       + V G ++   E V ++ +  +I+AIP+ ++++++ I 
Sbjct  166  RMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEIN  225

Query  218  GSIDLKKVKVKTLPSIRELMEDRVRLSHLKDISIEDLLGREEVKIDVRGIENLLKGKRIL  277
               ++  V +  +P+I +++ + + +++LK + +EDLLGR+ V +D+  I   L  K IL
Sbjct  226  KICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTIL  285

Query  278  VTGAGGSIGSELCKQIAKMNPEELILLGHGENSIYLIDEFLSENFPN-LKKKRVIADVAC  336
            VTGAGGSIGSE+C+Q++K +P+ +ILLGHGENSIY I++ LS  + N +    VIADV  
Sbjct  286  VTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQN  345

Query  337  EN-LMELWMSRLKPDIVFHVAAHKHVPLMEENPLEAFRVNTLGTINLVELSRKMKVKHFV  395
               ++E+ M+ +KP  V+H AAHKHVPLME NP EA+R N LGT N+ E ++   V  FV
Sbjct  346  KTRILEV-MNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFV  404

Query  396  FISTDKAVNPTSVMGLTKRISELYI--MTQDTDDTKFSIVRFGNVLGSRGSVVEKFRRQI  453
             ISTDKAVNP++VMG TKRI+E+ I  + +D   T F  VRFGNVLGSRGSV+  F+ QI
Sbjct  405  MISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQI  464

Query  454  EKGGPVTVTDPRMKRYFMSIPEAVSLILQSLLYSSGNDLFILDMGEQIPIVKLAETMIML  513
            E GGPVTVT+P M RYFM+IPEA  L+LQ+   + G ++F+LDMG  + IV LA  +I L
Sbjct  465  ESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRL  524

Query  514  SGFVPHQDIKIVYTGVRPGEKMYEELTYPYERKEFTPHP---KIFRVKSD  560
            SG   ++DI I ++G+RPGEK+YEEL    +++E+ P+    KI+R K D
Sbjct  525  SG-KKEEDIGIEFSGIRPGEKLYEELL---NKNEIHPQQVYEKIYRGKVD  570

529) Cphamn1_0371 in NC_010831


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  267 bits (998),  Expect = 1e-72, Method: Compositional matrix adjust.
 Identities = 202/486 (42%), Positives = 324/486 (67%), Gaps = 42/486 (8%)

Query  118  MLFLLLLAS-----RGAARFFLNTRLQLGHCSTADKRLLIYGVGSAGIQLASAI---EQT  169
            M+ LLL+++     R   R+F++        +   K  L+ G G +G  L   +   ++ 
Sbjct  113  MMHLLLIGGSRLFWRVYRRYFIDN-------AVEKKATLVVGAGQGGSVLIREMLRSQDM  165

Query  170  TRHLLIGFIDDDPKLHGRMVKGLKVFSF-GQVARLVEQATVTDILLAIPSASRSRRNQI-  227
              + +++  DD  K    +   +KV ++  +++ LV +  +  I++AIP+ S+ R N+I 
Sbjct  166  RMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEIN  225

Query  228  ----LQALQPFPVHVQTLPSLEDLTDGNISVRDVKEIEIEDLLGRDPVSSGPSLFRRNIt  283
                +++++ F      +P++ED+  G++ V ++K +E+EDLLGRDPV  + +L+ R++T
Sbjct  226  KICNIEGVELF-----KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELT  280

Query  284  gktvvvtgaggSIGRELCRQILIGCADKLIMIDHAEFNLHDAYLELE-GYRERKQQDTEI  342
             KT++VTGAGGSIG E+CRQ+    ++K+I+++H+E ++     EL   Y +R     E+
Sbjct  281  NKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNR----IEF  336

Query  343  VPLLCNVAENHRFSAICSSYHPHTIYHAAAYKHVPMVERNPVEGVRNNVFGTLRSALAAQ  402
            VP++ +V ++ R+  + + + P ++YHAAA KHVP++E NP E++RNN++GT   A +A+
Sbjct  337  VPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAK  396

Query  403  EYGVESFILVSTDKAVRPANFMGASKRLCEIILQALSAEENGSGTCFSMVRFGNVLDSSG  462
            E  V  F+++STDKAV P+N MGA+KR+ E+++Q+L  +E+ S T F  VRFGNVL+S G
Sbjct  397  EGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSL--NEDNSKTSFVAVRFGNVLGSRG  454

Query  463  SVVPLFRQQIKDGGPVTVTHPEITRYFMTIPEAVQLVIQSGAMSLGGEVFVLDMGEPVKI  522
            SV+PLF++QI  GGPVTVTHPE+TRYFMTIPEA +LV+Q+GA++ GGEVFVLDMG PVKI
Sbjct  455  SVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKI  514

Query  523  IDLAKRMIGLSGLTVLDRNNRKGDIPIEVIGLRPGEKLYEELLISGDPQPTD-HPRIFKA  581
            +DLAK +I LSG       ++  DI IE  G+RPGEKLYEELL   + +P +   +I+++
Sbjct  515  VDLAKNLIRLSG-------KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRG  567

Query  582  H-EEFI  586
              +++I
Sbjct  568  KVDHYI  573

530) Weevi_1083 in NC_015144


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  267 bits (997),  Expect = 2e-72, Method: Compositional matrix adjust.
 Identities = 206/489 (43%), Positives = 337/489 (69%), Gaps = 12/489 (2%)

Query  131  LLMVYCRAMYKTFYRWYVLETP-NKVRSIIYGAGDSGIITLNA-LQNDTYRKSLIFAFVD  188
            LL++    ++   YR+Y ++ + +K  +++ GAG++G + +   L+++  R   ++A VD
Sbjct  116  LLLIGGSRLFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLA-VD  174

Query  189  DNKKKQKTTIHG-INVLSPDVLTESFIVQHRIDEIILSIQNITNEQIFEITRKLDKLPVK  247
            D+K+KQK TI   ++V +       ++ + RI  II++I  +++ ++ EI +  +   V 
Sbjct  175  DDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVE  234

Query  248  LKIIPPASNWLDGKYTSKQIKKLKIEDLLGRKPINLDNPIIDEEIvgkvvvvtgaagSIG  307
            L  +P   + L G    +++KK+ +EDLLGR P++LD ++I  E+  K ++VTGA+GSIG
Sbjct  235  LFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIG  294

Query  308  GELARQIAQKAFKQLILIDVAESALYDIQQGFKTTNSEETHFI--IGNIRDYKRMEQIFI  365
            +E+ RQ+++   +++IL++ +E+++Y I+Q +  T ++  +F+  I+++++  R+ ++  
Sbjct  295  SEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMN  354

Query  366  RFRPDIVFHAAAYKHVPLMEQYPFESVNTNVRGTKNVADLSVLYGVKKFVMISTDKAVNP  425
             F+P  V+HAAA KHVPLME  P E++  N+ GTKNVA+ +    V KFVMISTDKAVNP
Sbjct  355  EFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNP  414

Query  426  TNVMGATKRIAEIYVSCLNKKSA-TNFIVTRFGNVLGSNGSVIPLFKRQIEKGGPLTVTH  484
            +NVMGATKRIAE+ +  LN  ++ T+F+  RFGNVLGS GSVIPLFK QIE GGP+TVTH
Sbjct  415  SNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTH  474

Query  485  EGITRFFMTIPEACQLVLEAAVMGNGGEIYVFDMGKSVKIMDLAKRMIYLSGLKYPDDID  544
              +TR+FMTIPEA +LVL+A+ +++GGE++V+DMGK+VKI+DLAK +I LSG K  +DI+
Sbjct  475  PEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKK-EEDIG  533

Query  545  IRITGLRPGEKIYEELLADKENTIKTHHDKIMIAKVRDCDCDEMEFKINKLITFAQNHFT  604
            I ++G+RPGEK+YEELL  +E   +   +KI  +KV +    E+++ ++ LI    N+F+
Sbjct  534  IEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLI----NNFS  589

Query  605  RKDNLELVK  613
            +   L + +
Sbjct  590  KEKLLKIAN  598

531) BHWA1_01906 in NC_012225


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  266 bits (994),  Expect = 2e-72, Method: Compositional matrix adjust.
 Identities = 196/441 (45%), Positives = 308/441 (70%), Gaps = 12/441 (2%)

Query  1    MNKKNIVIIGAGNAGETLASEILTSDNNNEYNILCFLDDDENKKQVNIENHSIDVKGKVK  60
            ++KK  +++GAG++G  L  E+L S++     +L  +DDD NK+++ I ++ + V+G V 
Sbjct  138  VEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLA-VDDDKNKQKMTITER-VKVQGYVE  195

Query  61   DIEKTIDFYKNQNieieeiiiaiPTLKQKELLEILDIIYPTGIK-YKILPCFFEIIKGNA  119
            DI   +     +++ I  IIIAIPTL QK L EI  I    G+  +K +P + +++ G+ 
Sbjct  196  DIPELV-----KKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFK-MPNIEDVLSGEL  249

Query  120  SIKDIRNIEPSDLLGREEIGFDEKEISAYYQNKTILVTGGGGSIGSELVRQLITLPVKKV  179
             +++++++E  DLLGR+ + +D   IS    NKTILVTG+GGSIGSE+ RQ+  +  +K+
Sbjct  250  EVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKI  309

Query  180  MALDNSESAIHSLIMSINDRKNEKNKHKFTYIISNVRDYVKVDKILKEENPDIIFHAAAH  239
            + L+++E++I S+   ++  K   N+  F  +I++V++  ++  +++E +P  ++HAAAH
Sbjct  310  ILLGHGENSIYSIHQELS--KTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAH  367

Query  240  KHLPFMEAYPEEAIKNNILATENIATLAIKNNIKNFVFISTDKAVRPTSLMGASKRICER  299
            KH+P+ME  P+EAI+NNIL+T N+A  A   ++ +FV ISTDKAV P+++MGA+KRI E 
Sbjct  368  KHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEM  427

Query  300  MIMSLSHEQNSTAFKITRFGNVLGSSGSVIPVFEKQIREGKPLTVTHPEMVRFFMSIREA  359
            +I SL+++++ T+F   RFGNVLGS GSVIP+F +QI  G P+TVTHPEM R+FM+I EA
Sbjct  428  VIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEA  487

Query  360  ARLVIKACTLND-GIIFTLDMGKPVKILDLAKNMLKMYGLTEKDIPIIFTGIREGEKLYE  418
            +RLV++A +L + G +F LDMGKPVKI+DLAKN++++ G  E DI I F+GIR GEKLYE
Sbjct  488  SRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYE  547

Query  419  EILMDDETLIPSQYKKLFIAK  439
            E+L  +E      Y K++ +K
Sbjct  548  ELLNKNEIHPQQVYEKIYRGK  568

532) Bint_2797 in NC_017243


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  265 bits (989),  Expect = 5e-72, Method: Compositional matrix adjust.
 Identities = 195/441 (45%), Positives = 307/441 (70%), Gaps = 12/441 (2%)

Query  1    MNKKNIVILGAGNAGETLASEILTSDDSNEYNILCFLDDDENKKQVNIENHSIDVKGKIK  60
            ++KK  +++GAG++G  L  E+L S+D     +L  +DDD NK+++ I ++ + V+G + 
Sbjct  138  VEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLA-VDDDKNKQKMTITER-VKVQGYVE  195

Query  61   DIENTIEYYKNHSieieeiiiaiPTLKQKELLEILDIIYPTGIR-YKILPCFFEIIKGNA  119
            DI + +       + I  IIIAIPTL QK L EI  I    G+  +K +P + +++ G+ 
Sbjct  196  DIPELV-----KKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFK-MPNIEDVLSGEL  249

Query  120  SIKDIRNIEPSDLLGREEIGFDEKEISAYYQDKTILVTGGGGSIGSELVRQLITLPVKKV  179
             +++++++E  DLLGR+ + +D   IS    +KTILVTG+GGSIGSE+ RQ+  +  +K+
Sbjct  250  EVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKI  309

Query  180  MALDNSESAIHSLIMSINDRKNEKNKHKFQYIISNVRDYVKVDKILKEENPDIIFHAAAH  239
            + L+++E++I S+   ++  K   N+  F  +I++V++  ++  +++E +P  ++HAAAH
Sbjct  310  ILLGHGENSIYSIHQELS--KTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAH  367

Query  240  KHLPFMEAYPEEAIKNNILATENIATLAIKNNIKNFVFISTDKAVRPTSLMGASKRICER  299
            KH+P+ME  P+EAI+NNIL+T N+A  A   ++ +FV ISTDKAV P+++MGA+KRI E 
Sbjct  368  KHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEM  427

Query  300  MIMSLSHEQNSTAFKITRFGNVLGSSGSVIPVFEKQIREGKPLTVTHPEMVRFFMSIREA  359
            +I SL+++++ T+F   RFGNVLGS GSVIP+F +QI  G P+TVTHPEM R+FM+I EA
Sbjct  428  VIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEA  487

Query  360  ARLVIKACTLNDGI-IFTLDMGKPVKILDLAKNMLKMYGLTEKDIPIIFTGIREGEKLYE  418
            +RLV++A +L +G  +F LDMGKPVKI+DLAKN++++ G  E DI I F+GIR GEKLYE
Sbjct  488  SRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYE  547

Query  419  EILMDDETLIPSQYKKLFIAK  439
            E+L  +E      Y K++ +K
Sbjct  548  ELLNKNEIHPQQVYEKIYRGK  568

533) Hore_16980 in NC_011899


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  262 bits (978),  Expect = 3e-71, Method: Compositional matrix adjust.
 Identities = 193/431 (45%), Positives = 303/431 (71%), Gaps = 6/431 (1%)

Query  2    KNLLIIGAGSAGKLVLEEILKNNESYNYNIIGFLDADINKHGTSIHG-YKVLGHHDNISF  60
            K  L++GAG +G +++ E+L++++     +++ +D D NK+  +I    KV G  ++I+ 
Sbjct  141  KATLVVGAGQGGSVLIREMLRSQDMRMQPVLA-VDDDKNKQKMTITERVKVQGYVEDIPE  199

Query  61   YIDQYSVDEVIVATTEIDRAGLEKIYQNTKKFQIGIKVLPTLQELLMEEPFTKQLREVRV  120
             + ++ +  +I+A   + +  L+ I +  +   + +  +P ++++L  E   ++L+ V V
Sbjct  200  LVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEV  259

Query  121  EDLLGREPVKINSDNIYKYINHKKVLVTGAAGSIGSELCRQIAKYDPRELIILDInenel  180
            EDLLGR+PV ++   I + + +K +LVTGA+GSIGSE+CRQ++K+DP+ +I+L+  EN +
Sbjct  260  EDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSI  319

Query  181  yflnlflKRHYNLNVSLE--ICNIREKSKLEYLFNYYKPQLVFHAAAHKHVPLMEKNIDE  238
            Y ++  L + Y   + +   I ++++K+++  + N +KP  V+HAAAHKHVPLME N +E
Sbjct  320  YSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHE  379

Query  239  AIKNNVFGTKNLLDLSDKYGVEKFVLISTDKAVNPTNVMGATKRLSEIMLEKIN-KYSKT  297
            AI+NN++GTKN+ + +    V KFV+ISTDKAVNP+NVMGATKR++E++++ +N   SKT
Sbjct  380  AIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKT  439

Query  298  QYMAVRFGNVLGSNGSVVPLFKTLIKEGKDLTVTHEEATRYFMTIPEAVQLVLEAGFIGK  357
             ++AVRFGNVLGS GSV+PLFK  I  G  +TVTH E TRYFMTIPEA +LVL+AG +++
Sbjct  440  SFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQ  499

Query  358  GGEVFVLDMGEPVKIIDLAKKMIELSGLTLGRDINIKITGLRPGEKLHEELMHDINSCEK  417
            GGEVFVLDMG PVKI+DLAK++I LSG     DI I ++G+RPGEKL EEL++  +   +
Sbjct  500  GGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQ  558

Query  418  TQNKKIYIAKI  428
                KIY +K+
Sbjct  559  QVYEKIYRGKV  569

534) PGLF in NC_005090


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  262 bits (979),  Expect = 4e-71, Method: Compositional matrix adjust.
 Identities = 213/488 (44%), Positives = 325/488 (67%), Gaps = 29/488 (5%)

Query  119  FVLSVIFIGTIRISKRVY----LENVREHSPKVALIFGGGTQAANLVKSALSG-EIPVYP  173
             ++ +++IG  R+  RVY    ++N  E   K +L+ G+G  ++ L++  L + ++ + P
Sbjct  112  WMMHLLLIGGSRLFWRVYRRYFIDNAVEK--KATLVVGAGQGGSVLIREMLRSQDMRMQP  169

Query  174  IAIIDDNPKIEGTYIANLRVYPMSSCSELITKHKISTAVLTKEYAKPPL-EKLFKEIHAL  232
            +  +DD+ + +   I++ RV  + +  E I        +     A P L +K ++EI+ +
Sbjct  170  VLAVDDDKNKQKMTITE-RV-KVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKI  227

Query  233  -GITDI------KIATTLKED---EPLKDVSIEDLLSRPPKDLDRSVIKEFIHDKTVLit  282
              I ++      +I   L  +   + LK V +EDLL+R P +LD ++I   + +KT+L+T
Sbjct  228  CNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVT  287

Query  283  ggggsigsEIARQCVNFGAQKVILLDHSEYNLYAITEELQK-----FNILPVMFSILEKE  337
            G+GGSIGSEI RQ  +F++QK+ILL+H+E ++Y+I +EL K     ++++PV+  + +K 
Sbjct  288  GAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKT  347

Query  338  RLLELFKQEKPDILLHAAAYKHVPLCEGNMYSAVENNVLGSKNVIDCAIECEIPKIVVIS  397
            R+LE+ ++ KP  + HAAA KHVPL E N   A+ NN+LG+KNV + A E E++K+V+IS
Sbjct  348  RILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMIS  407

Query  398  TDKAVRPTNVMGATKRVVELYAQNV--DSKKSEIVAVRFGNVLGSSGSVVPKFKAQIDRG  455
            TDKAV P+NVMGATKR+ E+  Q++  D+ K+ +VAVRFGNVLGS GSV+P FK QI+ G
Sbjct  408  TDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESG  467

Query  456  GPITVTHPEITRYFMLIPEACRLVLQAAAIAKGGEIFILDMGAPVKIVDLAKNMLKLYkk  515
            GP+TVTHPE+TRYFM IPEA RLVLQA+A+A+GGE+F+LDMG PVKIVDLAKN+++L  K
Sbjct  468  GPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGK  527

Query  516  eeeieiV-FTGLRPGEKLYEELLIDDSEQKTQ-YESIHVARPTPYDIHKLNRDIKELIQA  573
             EE   + F+G+RPGEKLYEELL  +  +  Q YE I  ++   Y    ++  + +LI+ 
Sbjct  528  KEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDLINN  587

Query  574  SNKVTKLK  581
             +K   LK
Sbjct  588  FSKEKLLK  595

535) Tmel_1286 in NC_009616


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  261 bits (976),  Expect = 6e-71, Method: Compositional matrix adjust.
 Identities = 195/485 (41%), Positives = 320/485 (66%), Gaps = 25/485 (5%)

Query  102  FVMFLSSFTILVGVRLF---YQFILENRRNSERRYLIIGSGDVAVSIAEEIIKSG---LG  155
            F+  +  + ++ G RLF   Y+  + +     +  L++G+G+ +  +  E+++S    + 
Sbjct  109  FITWMMHLLLIGGSRLFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQ  168

Query  156  DVVGFIGDDASKIGRTIFGK-KVLGPLIKLEDYLKLFDYDEVIIAQPNLNSKQINDIIEK  214
             V++ ++DD +K   TI  + KV G +  + + +K F    +IIA P L+ K++N+I   
Sbjct  169  PVLA-VDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKI  227

Query  215  VNLKRTKVKVIPSFEELFKEKIGIEDIREISLEDIIGREPVKVSLNDIKECIKDRVVLVT  274
             N+    +  +P++E+++   + +++++ + +ED++GR+PV + +  I   + ++ +LVT
Sbjct  228  CNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVT  287

Query  275  GAGGSIGSEICRQIAFQKPKELLLLGRGENSIYEINEELNEKFPD-LKVSRIIADVENYK  333
            GAGGSIGSEICRQ++   P+ ++LLG+GENSIY I++EL+  + + +    +IADV+N  
Sbjct  288  GAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKT  347

Query  334  WMEEIFKRYKPEIVFHTAAHKHVPLMEENPYEAIRVNVFGTINLVKLSCVFNVEKFVFIS  393
            ++ E+ + +KP  V+H+AAHKHVPLME NP EAIR N++GT N+   +   +V KFV IS
Sbjct  348  RILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMIS  407

Query  394  TDKAVNPTSFMGLSKRISELYVLS---KKCSTRFSIVRFGNVIGSRGSVLWKFKKQIENG  450
            TDKAVNP++ MG +KRI+E+ + S    +  T F  VRFGNV+GSRGSV+  FK+QIE+G
Sbjct  408  TDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESG  467

Query  451  KPVTITHPEMKRYFMSIPEAVSLVLQSIVL--NGNLFVLDMGKQISVEQIAGKLAKLLGK  508
             PVT+THPEM RYFM+IPEA  LVLQ+  L   G++FVLDMGK + + ++A +L +L GK
Sbjct  468  GPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGK  527

Query  509  --EDIDVVYTGIRGGEKLYEELFYPYEIPKNTEHP-KIYSVDFRPNISE---NEIEYISK  562
              EDI++ ++GIR GEKLYEEL     + KN  HP ++Y   +R ++ +    E++ I  
Sbjct  528  KEEDIGIEFSGIRPGEKLYEEL-----LNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVE  582

Query  563  EILES  567
            +++++
Sbjct  583  DLINN  587

536) HMPREF0946_01294 in NC_022196


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  261 bits (975),  Expect = 8e-71, Method: Compositional matrix adjust.
 Identities = 188/439 (43%), Positives = 313/439 (72%), Gaps = 6/439 (1%)

Query  128  IKKDLNQENVLIYGAGESGVLLVKESKINPNFPYRIVGFLDDNVNKIggkvyglkvlgg-  186
            I + +++   L+ GAG++G +L++E   + +   + V  +DD+ NK    +     + G 
Sbjct  134  IDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGY  193

Query  187  lDRVREIVEKKDISKIIISMPSVSQNKVSNILKEINKIEGLSVKILPNVDNLIEEGNLAT  246
            ++ + E+V K  I KIII++P++SQ+++++I K I +IEG+ +  +PN+++++       
Sbjct  194  VEDIPELVKKFRIKKIIIAIPTLSQKRLNEINK-ICNIEGVELFKMPNIEDVLSGELEVN  252

Query  247  QLRNIKLEDLLGRDEIKINTKEVFDFVQDKIIFVTGGGGSIGSELINQIAKYnpkkiini  306
            +L+++ +EDLLGRD + ++   +   + +K I+VTG+GGSIGSE+  Q++K++P+KII +
Sbjct  253  NLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILL  312

Query  307  einenASYLMELELKRKYPY-LDYKTEIASIRDFNKLDILFNKYKPDILFHAAAHKHVPL  365
               EN+ Y ++ EL + Y   +++   IA +++  ++  + N +KP  ++HAAAHKHVPL
Sbjct  313  GHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPL  372

Query  366  MENNPEEAIKNNIFGTKNIAECCLKYKLGSVVLISTDKAVNPTNIMGTTKRVCEMIFQKY  425
            ME NP+EAI+NNI+GTKN+AE      ++  V+ISTDKAVNP+N+MG+TKR+ EM++Q  
Sbjct  373  MEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSL  432

Query  426  SEKSSDTKFIAVRFGNVLGSNGSVIPIFSKLIEEGKNLTLTHRDIIRYFMTIPEAAQLVI  485
            +E +S T F+AVRFGNVLGS GSVIP+F + IE G  +T+TH ++ RYFMTIPEA++LV+
Sbjct  433  NEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVL  492

Query  486  EAATIGKGGEILILDMGEPVKIYDLAKNMIKLSG---SNVGIDIVGLRPGEKLFEELLYD  542
            +A+++++GGE+++LDMG PVKI DLAKN+I+LSG    ++GI++ G+RPGEKL+EELL  
Sbjct  493  QAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELLNK  552

Query  543  VNSSEKTSNNKIFITNMEN  561
             +   +   +KI+  ++++
Sbjct  553  NEIHPQQVYEKIYRGKVDH  571

537) B649_10065 in NC_020505


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  261 bits (975),  Expect = 8e-71, Method: Compositional matrix adjust.
 Identities = 189/463 (41%), Positives = 303/463 (66%), Gaps = 28/463 (6%)

Query  128  LSLLLIGAFRL----SKRVILERQNKPSTKPMLIIGSNHKAAALVKSS-KNADIPYSIQA  182
            + LLLIG+ RL     +R +++  N    K+ L++G+ + ++ L++   ++ D+   +Q+
Sbjct  114  MHLLLIGGSRLFWRVYRRYFID--NAVEKKATLVVGAGQGGSVLIREMLRSQDMR--MQP  169

Query  183  IIPWEESDYHLCGSSIDGIKV--YHPDNLKYVCEMFDIHSAAITVELTQKDLNSL-----  235
            +++ ++       +  + +KV  Y  D    V              L+QK LN +     
Sbjct  170  VLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICN  229

Query  236  VNNLALYDITDIQRLMILEDNQPSLKEISIEELLARHPHDLDTHILSSFIKGKTILITGA  295
            ++ + L+ + +I+ ++  E +  +LK + +E+LL+R+P +LD  ++S  +  KTIL+TGA
Sbjct  230  IEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGA  289

Query  296  GGSIGSEISMQCQLFGAKKLILIDHSEYNLYQIGERLPNA-------TLKLCSILDRSQL  348
            GGSIGSEI  Q   F+++K+IL++H+E ++Y I + L+++          +  + +++++
Sbjct  290  GGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTRI  349

Query  349  DFIMKSHKPDIVVHAAAYKHVPLCEINISVAIENNILGSRNIIDSSIEHKVAKIVIISTD  408
              +M+  KP  V HAAA KHVPL E N   AI NNILG++N+ +S+ E  V+K+V+ISTD
Sbjct  350  LEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTD  409

Query  409  KAVRPTNVMGTTKRVVELYAQNI--DPKQSEIVAVRFGNVLGSSGSVIPKFKAQIEAGGP  466
            KAV P+NVMG+TKR+ E+  Q++  D  ++ +VAVRFGNVLGS GSVIP FK QIE+GGP
Sbjct  410  KAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGP  469

Query  467  LTITHPDITRYFMLISEACQLVLQAASIARGGELFILDMGQPVKIADLAQTMIRLYAAKP  526
            +T+THP++TRYFM I+EA +LVLQA+++A+GGE+F+LDMG+PVKI DLA+ +IRL + K 
Sbjct  470  VTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKE  529

Query  527  --IEIVYTGLRPGEKLYEELLLDESEH-KTSYESITIARATSY  566
              I I ++G+RPGEKLYEELL  +  H +  YE I  ++   Y
Sbjct  530  EDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHY  572

538) Veis_4862 in NC_008786


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  260 bits (973),  Expect = 1e-70, Method: Compositional matrix adjust.
 Identities = 181/441 (42%), Positives = 308/441 (70%), Gaps = 17/441 (3%)

Query  117  MGAARAGWRTFAERRLVARQG---KPVLILGTLPQASDALRALKGSSQWQPVGILSPQPD  173
            +G++R  WR +  RR    ++   K+ L++G+   +S  +R +  S + +   +L+ + D
Sbjct  119  IGGSRLFWRVY--RRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDD  176

Query  174  EVGRSL---QSVRVWGTPAETARVAQTLAVRALLVASPPGASGRREMLLQAADT-GVALL  229
               + +   + V+V G   + + + + + ++ +++A P  +  R + + +  +  GV L+
Sbjct  177  KNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELF  236

Query  230  TLPRPDEWLKSD--GAGPrrleledllgreSVQLDVASLSGLLSGQTVLVTGAGGSIGAQ  287
             +P  ++ L ++      +++E+EDLLGR++V+LD+A +S  L+ +T+LVTGAGGSIG++
Sbjct  237  KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSE  296

Query  288  LCRQIARFGVRRLVCVDICEFAVYQLEQELREAHPQMQGCYYT---ANVREPARLLAIAD  344
            +CRQ+++F+ ++++ ++  E ++Y ++QEL  +  +     +    A+V++ +R+L + +
Sbjct  297  ICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIE--FVPVIADVQNKTRILEVMN  354

Query  345  KHRPAVVFHAAAYKHVPLMEELNAIEALRTNVAGSWHaaraagvcgagrFVMISTDKAVN  404
              +P  V+HAAA KHVPLME  N+ EA+R N+ G+ + A +A     ++FVMISTDKAVN
Sbjct  355  EFKPYAVYHAAAHKHVPLME-YNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVN  413

Query  405  PTNVMGASKRLAELMVQSAAQAFAGTHYVSVRFGNVLGSSGSVVPLFTRQIATGGPVTVT  464
            P+NVMGA+KR+AE+++QS  +  + T +V+VRFGNVLGS GSV+PLF  QI +GGPVTVT
Sbjct  414  PSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVT  473

Query  465  HPDIVRYFMTIAEAAQLVLQAGLMGRSGQIFVMDMGEPVKIIELARMMIRLSGKTELEIP  524
            HP++ RYFMTI+EA++LVLQAG ++++G++FV+DMG PVKI++LA+ +IRLSGK E +I 
Sbjct  474  HPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIG  533

Query  525  ISYTGLRPGEKLFEELLANDE  545
            I ++G+RPGEKL+EELL ++E
Sbjct  534  IEFSGIRPGEKLYEELLNKNE  554

539) Oant_0697 in NC_009667


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  258 bits (963),  Expect = 8e-70, Method: Compositional matrix adjust.
 Identities = 186/452 (42%), Positives = 312/452 (70%), Gaps = 23/452 (5%)

Query  123  WLLSTVFISASRF---GAKWLLRSSETDKRYTSSALIIGVGEPARQLATA-LRSHSDTLV  178
            W++  ++I++SR+     ++ +  +  +K+   ++L++G G+ +  L    LRS+   + 
Sbjct  112  WMMHLLLIGGSRLFWRVYRRYFIDNAVEKK---ATLVVGAGQGGSVLIREMLRSQDMRMQ  168

Query  179  VGF-VDPDGQLNGMDIIG-LRVYG-VEDIPALIENYGIKQVVVSEPALEQKQRQDFARLL  235
              + VD D + + M I   ++V G VEDIP L+ ++ IK+++++ P+L QK+ +++ ++ 
Sbjct  169  PVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKIC  228

Query  236  GRLPVSTRILPPIADLTAGKYLVSSLRNVEIDDLLGRSPVPPDAALLREVVEGRRIMVTG  295
                V    +P I D+ +G   V++L++VE++DLLGR PV  D AL+   +  + I+VTG
Sbjct  229  NIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTG  288

Query  296  AGGSIGSQLCRTIAQWNPACIVLFESSEFALYNIERQLRQL--ASCEIVPILGTVSNRDC  353
            AGGSIGS++CR +++ +P  I+L+  +E ++Y+I+++L +      E+VP+++ V N+  
Sbjct  289  AGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKTR  348

Query  354  VENAIRDNNVDTVYHCAAYKHVPLVEKNPLVGIFNNVFGTLEVAQAALNTDVERMVLISS  413
            + + + + +  +VYH AA KHVPL+E NP  +I NN++GT +VA++A + +V + V+IS+
Sbjct  349  ILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMIST  408

Query  414  DKAVRPTNVMGATKRWAELVVYYCGLLAEQSGKKKAFYSVRFGNVLGSNGSVVPLFREQI  473
            DKAV P+NVMGATKR AE+V+     L E+++K  +F +VRFGNVLGS GSV+PLF++QI
Sbjct  409  DKAVNPSNVMGATKRIAEMVI---QSLNEDNSKT-SFVAVRFGNVLGSRGSVIPLFKNQI  464

Query  474  ANGGPITLTHEDMTRYFMSIKEAAELIVQSGGIAASGDTVLLEMGEPVKIRDLAENMILL  533
             +GGP+T+TH +MTRYFM+I EA+ L++Q+G++A +G+  +L+MG PVKI DLA N+I L
Sbjct  465  ESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRL  524

Query  534  AGLTIRNDENPHGDITIETTGIREGEKMYEEL  565
            +G   +++E    DI IE +GIR GEK+YEEL
Sbjct  525  SG---KKEE----DIGIEFSGIRPGEKLYEEL  549

540) BP951000_1375 in NC_014330


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  257 bits (959),  Expect = 1e-69, Method: Compositional matrix adjust.
 Identities = 194/441 (44%), Positives = 305/441 (70%), Gaps = 12/441 (2%)

Query  1    MDKKNIVIIGAGNAGETLASEILTSDENNEYNILCFLDDDENKKEINIYNHTIKVEGKVK  60
            ++KK  +++GAG++G  L  E+L S++     +L  +DDD NK+ + I  + +KV+G V 
Sbjct  138  VEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLA-VDDDKNKQKMTI-TERVKVQGYVE  195

Query  61   DIEKIINKYKNDNIELEEIIIAIPTLKQKELLEILDIIYPTGIK-YKILPCFFEIIKGNA  119
            DI  +++     ++ +  IIIAIPTL QK L EI  I    G+  +K +P + +++ G+ 
Sbjct  196  DIPELVK-----KFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFK-MPNIEDVLSGEL  249

Query  120  SIKDIRNIEPSDLLGREEIGFDEKEISDYYKDKTILVTGGGGSIGSELVRQLVTLPVKKV  179
             +++++++E  DLLGR+ + +D   IS    +KTILVTG+GGSIGSE+ RQ+  +  +K+
Sbjct  250  EVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKI  309

Query  180  MALDNSEGAIHSLIMSLNDRKNEKNKHKFKYIISNVRDYVKVDKILKQENPDIIFHAAAH  239
            + L+++E +I S+   L+  K   N+  F  +I++V++  ++  ++++ +P  ++HAAAH
Sbjct  310  ILLGHGENSIYSIHQELS--KTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAH  367

Query  240  KHLPFMEEYPEEAIKNNILATENIATLAiknniknfifiSTDKAVRPTSLMGASKRICER  299
            KH+P+ME  P+EAI+NNIL+T N+A  A   ++ +F+ ISTDKAV P+++MGA+KRI E 
Sbjct  368  KHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEM  427

Query  300  MIMSLSHEQNITKFKITRFGNVLGSSGSVIPVFERQIREGKPLTVTHPEMVRFFMSIREA  359
            +I SL+++++ T F   RFGNVLGS GSVIP+F  QI  G P+TVTHPEM R+FM+I EA
Sbjct  428  VIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEA  487

Query  360  ARLVIKACTLNDGV-IFTLDMGKPVKILDLAKNMLKMYGLTEKDIPIIFTGIREGEKLYE  418
            +RLV++A +L +G  +F LDMGKPVKI+DLAKN++++ G  E DI I F+GIR GEKLYE
Sbjct  488  SRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYE  547

Query  419  EILMDDETLIPSQYKKLFIAK  439
            E+L  +E      Y K++ +K
Sbjct  548  ELLNKNEIHPQQVYEKIYRGK  568

541) B2904_orf2613 in NC_018607


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  257 bits (959),  Expect = 1e-69, Method: Compositional matrix adjust.
 Identities = 194/441 (44%), Positives = 305/441 (70%), Gaps = 12/441 (2%)

Query  1    MDKKNIVIIGAGNAGETLASEILTSDENNEYNILCFLDDDENKKEINIYNHTIKVEGKVK  60
            ++KK  +++GAG++G  L  E+L S++     +L  +DDD NK+ + I  + +KV+G V 
Sbjct  138  VEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLA-VDDDKNKQKMTI-TERVKVQGYVE  195

Query  61   DIEKIINKYKNDNIELEEIIIAIPTLKQKELLEILDIIYPTGIK-YKILPCFFEIIKGNA  119
            DI  +++     ++ +  IIIAIPTL QK L EI  I    G+  +K +P + +++ G+ 
Sbjct  196  DIPELVK-----KFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFK-MPNIEDVLSGEL  249

Query  120  SIKDIRNIEPSDLLGREEIGFDEKEISDYYKDKTILVTGGGGSIGSELVRQLVTLPVKKV  179
             +++++++E  DLLGR+ + +D   IS    +KTILVTG+GGSIGSE+ RQ+  +  +K+
Sbjct  250  EVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKI  309

Query  180  MALDNSEGAIHSLIMSLNDRKNEKNKHKFKYIISNVRDYVKVDKILKQENPDIIFHAAAH  239
            + L+++E +I S+   L+  K   N+  F  +I++V++  ++  ++++ +P  ++HAAAH
Sbjct  310  ILLGHGENSIYSIHQELS--KTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAH  367

Query  240  KHLPFMEEYPEEAIKNNILATENIATLAiknniknfifiSTDKAVRPTSLMGASKRICER  299
            KH+P+ME  P+EAI+NNIL+T N+A  A   ++ +F+ ISTDKAV P+++MGA+KRI E 
Sbjct  368  KHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEM  427

Query  300  MIMSLSHEQNITKFKITRFGNVLGSSGSVIPVFERQIREGKPLTVTHPEMVRFFMSIREA  359
            +I SL+++++ T F   RFGNVLGS GSVIP+F  QI  G P+TVTHPEM R+FM+I EA
Sbjct  428  VIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEA  487

Query  360  ARLVIKACTLNDGV-IFTLDMGKPVKILDLAKNMLKMYGLTEKDIPIIFTGIREGEKLYE  418
            +RLV++A +L +G  +F LDMGKPVKI+DLAKN++++ G  E DI I F+GIR GEKLYE
Sbjct  488  SRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYE  547

Query  419  EILMDDETLIPSQYKKLFIAK  439
            E+L  +E      Y K++ +K
Sbjct  548  ELLNKNEIHPQQVYEKIYRGK  568

542) BPP43_08200 in NC_019908


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  257 bits (959),  Expect = 1e-69, Method: Compositional matrix adjust.
 Identities = 194/441 (44%), Positives = 305/441 (70%), Gaps = 12/441 (2%)

Query  1    MDKKNIVIIGAGNAGETLASEILTSDENNEYNILCFLDDDENKKEINIYNHTIKVEGKVK  60
            ++KK  +++GAG++G  L  E+L S++     +L  +DDD NK+ + I  + +KV+G V 
Sbjct  138  VEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLA-VDDDKNKQKMTI-TERVKVQGYVE  195

Query  61   DIEKIINKYKNDNIELEEIIIAIPTLKQKELLEILDIIYPTGIK-YKILPCFFEIIKGNA  119
            DI  +++     ++ +  IIIAIPTL QK L EI  I    G+  +K +P + +++ G+ 
Sbjct  196  DIPELVK-----KFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFK-MPNIEDVLSGEL  249

Query  120  SIKDIRNIEPSDLLGREEIGFDEKEISDYYKDKTILVTGGGGSIGSELVRQLVTLPVKKV  179
             +++++++E  DLLGR+ + +D   IS    +KTILVTG+GGSIGSE+ RQ+  +  +K+
Sbjct  250  EVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKI  309

Query  180  MALDNSEGAIHSLIMSLNDRKNEKNKHKFKYIISNVRDYVKVDKILKQENPDIIFHAAAH  239
            + L+++E +I S+   L+  K   N+  F  +I++V++  ++  ++++ +P  ++HAAAH
Sbjct  310  ILLGHGENSIYSIHQELS--KTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAH  367

Query  240  KHLPFMEEYPEEAIKNNILATENIATLAiknniknfifiSTDKAVRPTSLMGASKRICER  299
            KH+P+ME  P+EAI+NNIL+T N+A  A   ++ +F+ ISTDKAV P+++MGA+KRI E 
Sbjct  368  KHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEM  427

Query  300  MIMSLSHEQNITKFKITRFGNVLGSSGSVIPVFERQIREGKPLTVTHPEMVRFFMSIREA  359
            +I SL+++++ T F   RFGNVLGS GSVIP+F  QI  G P+TVTHPEM R+FM+I EA
Sbjct  428  VIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEA  487

Query  360  ARLVIKACTLNDGV-IFTLDMGKPVKILDLAKNMLKMYGLTEKDIPIIFTGIREGEKLYE  418
            +RLV++A +L +G  +F LDMGKPVKI+DLAKN++++ G  E DI I F+GIR GEKLYE
Sbjct  488  SRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYE  547

Query  419  EILMDDETLIPSQYKKLFIAK  439
            E+L  +E      Y K++ +K
Sbjct  548  ELLNKNEIHPQQVYEKIYRGK  568

543) WESB_0185 in NC_018604


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  257 bits (959),  Expect = 1e-69, Method: Compositional matrix adjust.
 Identities = 194/441 (44%), Positives = 305/441 (70%), Gaps = 12/441 (2%)

Query  1    MDKKNIVIIGAGNAGETLASEILTSDENNEYNILCFLDDDENKKEINIYNHTIKVEGKVK  60
            ++KK  +++GAG++G  L  E+L S++     +L  +DDD NK+ + I  + +KV+G V 
Sbjct  138  VEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLA-VDDDKNKQKMTI-TERVKVQGYVE  195

Query  61   DIEKIINKYKNDNIELEEIIIAIPTLKQKELLEILDIIYPTGIK-YKILPCFFEIIKGNA  119
            DI  +++     ++ +  IIIAIPTL QK L EI  I    G+  +K +P + +++ G+ 
Sbjct  196  DIPELVK-----KFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFK-MPNIEDVLSGEL  249

Query  120  SIKDIRNIEPSDLLGREEIGFDEKEISDYYKDKTILVTGGGGSIGSELVRQLVTLPVKKV  179
             +++++++E  DLLGR+ + +D   IS    +KTILVTG+GGSIGSE+ RQ+  +  +K+
Sbjct  250  EVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKI  309

Query  180  MALDNSEGAIHSLIMSLNDRKNEKNKHKFKYIISNVRDYVKVDKILKQENPDIIFHAAAH  239
            + L+++E +I S+   L+  K   N+  F  +I++V++  ++  ++++ +P  ++HAAAH
Sbjct  310  ILLGHGENSIYSIHQELS--KTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAH  367

Query  240  KHLPFMEEYPEEAIKNNILATENIATLAiknniknfifiSTDKAVRPTSLMGASKRICER  299
            KH+P+ME  P+EAI+NNIL+T N+A  A   ++ +F+ ISTDKAV P+++MGA+KRI E 
Sbjct  368  KHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEM  427

Query  300  MIMSLSHEQNITKFKITRFGNVLGSSGSVIPVFERQIREGKPLTVTHPEMVRFFMSIREA  359
            +I SL+++++ T F   RFGNVLGS GSVIP+F  QI  G P+TVTHPEM R+FM+I EA
Sbjct  428  VIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEA  487

Query  360  ARLVIKACTLNDGV-IFTLDMGKPVKILDLAKNMLKMYGLTEKDIPIIFTGIREGEKLYE  418
            +RLV++A +L +G  +F LDMGKPVKI+DLAKN++++ G  E DI I F+GIR GEKLYE
Sbjct  488  SRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFSGIRPGEKLYE  547

Query  419  EILMDDETLIPSQYKKLFIAK  439
            E+L  +E      Y K++ +K
Sbjct  548  ELLNKNEIHPQQVYEKIYRGK  568

544) Meso_0779 in NC_008254


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  257 bits (962),  Expect = 9e-70, Method: Compositional matrix adjust.
 Identities = 185/453 (41%), Positives = 298/453 (66%), Gaps = 25/453 (5%)

Query  123  WAGSLVSVVGSRLGIKWLLNGR--ISHAAHKKRVLVYGAGDAAMQLAEALSASGDRQVVG  180
            W   L+ + GSRL   W +  R  I +A +KK  LV GAG+++  L   +  S D ++  
Sbjct  112  WMMHLLLIGGSRLF--WRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQP  169

Query  181  I--VSDDSGLHGMEI---VGIRVYPAEQLEDLVLDTEAQEVIIAAsssstrrrrELVTRL  235
            +  V DD   + M I   V ++ Y  E++ +LV     + +IIA ++ S +R  E + ++
Sbjct  170  VLAVDDDKNKQKMTITERVKVQGY-VEDIPELVKKFRIKKIIIAIPTLSQKRLNE-INKI  227

Query  236  GRFP-VKIRVLPSIADVAAGKYLVSYVRDIDIDDLLGRSPVPADPELMRSSIDERIIMVT  294
              +  V +  +P+I DV +G   V+ ++ ++++DLLGR PV  D  L+   + ++ I+VT
Sbjct  228  CNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVT  287

Query  295  GAAGSIGSEVCRTIARGKPTKLVLFEMNEPGLYQIERELRR-YGA-FPIVPVLGSVCDAH  352
            GA+GSIGSE+CR +++  P K++L+   E ++Y I++EL + YG  + +VPV++ V +  
Sbjct  288  GAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNKT  347

Query  353  LVRQTLAEHGVQTVYHCAAYKHVPLVECNPLEGVRNNVFGTLTLVEEACAADVRNFILIS  412
             + + + E    +VYH AA KHVPL+E NP E++RNN++GT  + E A  ++V +F++IS
Sbjct  348  RILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMIS  407

Query  413  SDKAVRPTSVMGATKRRAELIVRYVGEEACKKEKNRVFSSVRFGNVIGSSGSVVPLFKEQ  472
            +DKAV P++VMGATKR AE++++ + E+  K      F +VRFGNV+GS GSV+PLFK+Q
Sbjct  408  TDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTS----FVAVRFGNVLGSRGSVIPLFKNQ  463

Query  473  IAAGGPVTLTHDDMTRYFMSVREAAGLIVQAGALSRSGDILLLDMGEPIRIRQLAEDMIM  532
            I +GGPVT+TH +MTRYFM++ EA+ L++QAGAL+++G++++LDMG P++I +LA ++I 
Sbjct  464  IESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIR  523

Query  533  LAGFTVRNEDNPDGDIEIVTIGMRDGEKLYEEL  565
            L+G       + + DI I   G+R GEKLYEEL
Sbjct  524  LSG-------KKEEDIGIEFSGIRPGEKLYEEL  549

545) wbiI in NC_014366


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  256 bits (957),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 202/489 (42%), Positives = 313/489 (65%), Gaps = 32/489 (6%)

Query  126  VAGTR---SAFRLWFVHGLTEQNERVIIYGAGPGGISLVSAL--HQGSVFTPVALVDSRV  180
            ++G+R     +R  F++   E++  +++ GAG GG  L+  +   Q+    PV  VD   
Sbjct  119  IGGSRLFWRVYRRYFIDNAVEKKATLVV-GAGQGGSVLIREMLRSQDMRMQPVLAVDDDK  177

Query  181  EKQKTFIHG---LYVYSVGQLPWLIAEHEVSRIFLVMENLSRAERAEILQTLESLSVRVQ  237
            +KQK  I     +  Y V ++P L+    + +I++ +  LS+    EI +  +  +V + 
Sbjct  178  NKQKMTITERVKVQGY-VEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELF  236

Query  238  TVPSMADVISGRARIldlrdvdvedllgrdQIQPDQLLMQRCIRGKVVMVTGAGGSIGSE  297
             +P++ DV+SG   + +L+ V+VEDLLGRD ++ D  L+ R +  K ++VTGAGGSIGSE
Sbjct  237  KMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSE  296

Query  298  LCRQIITQKPARLVIVDSSEYALYHIDQELRKLNPSLVAASGESVVVPLLCSVQKENRIE  357
            +CRQ+    P ++++++ +E ++Y I+QEL K   + +        VP++  VQ+  RI 
Sbjct  297  ICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIE------FVPVIADVQNKTRIL  350

Query  358  VIMRTFGVQTVYHAAAYKHVPMVEHNIVEGVRNNVFGTWYSAEAAIRAGVETFVLISTDK  417
             +M  F   +VYHAAA KHVP++E N  E++RNN++GT   AE+A  + V  FV+ISTDK
Sbjct  351  EVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDK  410

Query  418  AVRPANVMGASKRMAELVLQGLASRQKKTRFCMVRFGNVLGSSGSVVPLFQEQILSGGPV  477
            AV P+NVMGA+KR+AE+V+Q+L   + KT F  VRFGNVLGS GSV+PLF++QI SGGPV
Sbjct  411  AVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPV  470

Query  478  TVTHPDVMRYFMSIPEAAQLVIQASAMGLGGEVFLLDMGAPVRIADLARRMVHLMGYRVR  537
            TVTHP++ RYFM+IPEA++LV+QA+A++ GGEVF+LDMG PV+I DLA+ +++L      
Sbjct  471  TVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRL------  524

Query  538  QQGVAFDVRQGAMESGIEIAYTGLRPGEKLYEELLIGHDSEITD-HPRILKAREASLAWV  596
                      G  E +I I ++G+RPGEKLYEELL  ++ +  +   +I +++       
Sbjct  525  ---------SGKKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKT  575

Query  597  EVAALMTEL  605
            EV  ++ +L
Sbjct  576  EVDLIVEDL  584

546) Dshi_3857 in NC_009956


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  256 bits (957),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 188/465 (41%), Positives = 305/465 (66%), Gaps = 18/465 (3%)

Query  144  IYRR---DEGHTR--VMIYGAGTTGTQLVSAL--NAHKTIYPVAFVDDNAALHGLTVAG-  195
            +YRR   D++  +   ++ GAG  G+ L+  +  + +  + PV  VDD+   + +T++  
Sbjct  128  VYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITER  187

Query  196  LPVHSPVR-IRELVRDKQIDRVLLAVPSLSQPKQAQLARRLQKLGLEVQALPSFSQLIGE  254
            + V++ V  I ELV+  +I ++++A+P+LSQ +  ++ +  +  G+E+  +P++ ++++ 
Sbjct  188  VKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPNIEDVLSG  247

Query  255  EELVDKLKPVESHTFLGRQQVCTELERGCESYADRVVLISGAGGSIGSELCRQVLACRPA  314
            E  V++LK VE + +LGR+ V  ++       +++ +L++GAGGSIGSE+CRQV    P 
Sbjct  248  ELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQ  307

Query  315  KLVLYELNELALYNVDMELRSLAEVTGTELVPVLGSVTDPRQVRGVLAEHKVQVVLHAAA  374
            K++L    E ++Y+++ EL   +     E+VPV++ V +  ++  V+ E K   V HAAA
Sbjct  308  KIILLGHGENSIYSIHQELSK-TYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAA  366

Query  375  YKHVPLVEANPLAGLANNVFGTQTLAREAAEYGIERFILISSDKAVRPTNVMGASKRLAE  434
             KHVPL+E NP  ++ NN++GT+ +A  A E  + +F++IS+DKAV P+NVMGA+KR+AE
Sbjct  367  HKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAE  426

Query  435  LVIQDLETRYTGTVFTMVRFGNVLGSSGSVVPLFQEQIRRGGPVTVTDPKVTRYFMTVQE  494
            +VIQ L+   + T F  VRFGNVLGS GSV+PLF++QI  GGPVTVT+P +TRYFMT+ E
Sbjct  427  MVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPE  486

Query  495  AVRLVLTAGSMARGGEVFVLDMGAPVPIVQLARQVIESAGYTVRDDATPDGDIEIVFTGL  554
            A RLVL AG++A+GGEVFVLDMG PV IV+LA+++I       R  +  + DI I F+G+
Sbjct  487  ASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLI-------RLSGKKEEDIGIEFSGI  539

Query  555  RPGEKMFEELTITDD-HIGTRHPKLFCAREQSLSEIEIAGILRSL  598
            RPGEK++EEL   ++ H      K++ ++ +     E+  I+  L
Sbjct  540  RPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHYIKTEVDLIVEDL  584

547) Spica_1447 in NC_015732


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  250 bits (934),  Expect = 1e-67, Method: Compositional matrix adjust.
 Identities = 184/428 (43%), Positives = 294/428 (69%), Gaps = 9/428 (2%)

Query  11   IIGAGFAGQTLAREI-KAKGIFGEVVAFLDDDPAKIGHSI-EGIPVLGPIKDVARLLRMN  68
            ++GAG +G  L RE+ +++++  + V  +DDD  K   +I E + V G + D++ L++  
Sbjct  145  VVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKF  204

Query  69   PADEAIIAIPSASREYLRELYNILKKAGFEKIRILPGISQIIEGDAHLIQTRSIDPQDLL  128
                 IIAIP+ S+  L E+ +I +  G E ++ +P I +++ G+ ++ + + ++ +DLL
Sbjct  205  RIKKIIIAIPTLSQKRLNEINKICNIEGVELFK-MPNIEDVLSGELEVNNLKKVEVEDLL  263

Query  129  GRTPVAIGLKESLTYLRGKRVLVTGAGGSIGSELCRQLLSGGAQRLYLFGHGENSIYQID  188
            GR PV +++      L  K +LVTGAGGSIGSE+CRQ+   ++Q++ L+GHGENSIY I+
Sbjct  264  GRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIH  323

Query  189  RELRLLQEEGVGEKATIVPIIGDLKDEAYVNYIIGKLKVDVIFHAAAYKHVPMMEENPVA  248
            +EL        G++  +VP+I+D+++ + +  ++  +K   ++HAAA KHVP+ME NP  
Sbjct  324  QEL----SKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHE  379

Query  249  AIENNVFGTENLVKAAGHYKVKRFVLISTDKAVDPVSVYGASKMLCEQLVLSASQEGG-A  307
            AI NN++GT N+  +A +  V +FV+ISTDKAV+P +V GA+K + E ++ S +++ + +
Sbjct  380  AIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKT  439

Query  308  HFMVVRFGNVLGSRGSIMPLFQKQIEKGGPVTVTHPEARRWFMTIPEACSLVLKAGGVGE  367
             F+ VRFGNVLGSRGS++PLF++QIE GGPVTVTHPE  R FMTIPEA  LVL+AG++++
Sbjct  440  SFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQ  499

Query  368  NGKLYLLDMGEPIKIRELAEQMIRFYGFEPDREIKIEYIGLRPGERLDERLWSENEIPVE  427
             G +++LDMG P+KI +LA ++IR+ G   + +I IE+ G+RPGE+L E L + NEI  +
Sbjct  500  GGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQ  558

Query  428  TEYPRIRR  435
              Y +I R
Sbjct  559  QVYEKIYR  566

548) TREAZ_0660 in NC_015577


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  249 bits (929),  Expect = 3e-67, Method: Compositional matrix adjust.
 Identities = 182/429 (43%), Positives = 294/429 (69%), Gaps = 11/429 (2%)

Query  11   IIGAGFAGQTLAKEI-REKGIFGEVVAFLDDDPAKIGRRLDE-IPVLGPIRDVARLLRLH  68
            ++GAG +G  L +E+ R +++  + V  +DDD  K    + E + V G + D++ L++  
Sbjct  145  VVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKF  204

Query  69   PADEAIIAIPSASREYLEELYQILKNAGFERIRILPGISQIIEGDAHLIQTRSIDPQDLL  128
                 IIAIP+ S+  L+E+ +I +  G E ++ +P I +++ G+ ++ + + ++ +DLL
Sbjct  205  RIKKIIIAIPTLSQKRLNEINKICNIEGVELFK-MPNIEDVLSGELEVNNLKKVEVEDLL  263

Query  129  GRTPVAVNLRQSLSYLRGKRVLVTGAGGSIGSELCRQLLSGGASRLYLFGHGENSIYQID  188
            GR PV +++      L  K +LVTGAGGSIGSE+CRQ+   ++ ++ L+GHGENSIY I+
Sbjct  264  GRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIH  323

Query  189  KELRLLQEEGVGEKAVLVPVIGDLKDREYMDWILEHLKADVVFHTAAYKHVPMMEENPVA  248
            +EL        G++  +VPVI+D++++  +  +++++K+  V+H+AA KHVP+ME NP  
Sbjct  324  QEL----SKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHE  379

Query  249  SIENNLFGTDNLISAAKKHGVKRFVHITTDKAVEPVSVYGISKYLCEGLVLDAARENSGN  308
            +I NN++GT N+  +AK   V +FV I+TDKAV+P +V G +K + E +V+++  E++++
Sbjct  380  AIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAE-MVIQSLNEDNSK  438

Query  309  KGINFMVVRFGNVLGSRGSIMPLFQKQIEKGGPVTITHPEMKRWFMTIPEACSLVLKAGG  368
             +  F+ VRFGNVLGSRGS++PLF++QIE GGPVT+THPEM R FMTIPEA  LVL+AG+
Sbjct  439  TS--FVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGA  496

Query  369  VGENGNLYLLDMGEPVKIKDLAEQMIRFYGLTPEKDIKIEYIGCRPGERLGEKLWWDDEE  428
            +++ G++++LDMG PVKI DLA ++IR+ G   E DI IE+ G RPGE+L E L   +E 
Sbjct  497  LAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIGIEFSGIRPGEKLYEELLNKNEI  555

Query  429  PRPTAFDRI  437
                 +++I
Sbjct  556  HPQQVYEKI  564

549) Sulku_2414 in NC_014762


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  247 bits (923),  Expect = 1e-66, Method: Compositional matrix adjust.
 Identities = 187/466 (41%), Positives = 308/466 (67%), Gaps = 32/466 (6%)

Query  127  ILSFLLIGALRL----SKRLSIESAKGDAHKPALIIGISPNTANLIKSMMESSNEYYPVG  182
            ++ +LLIG+ RL     +R  I++A     K++L++G +   + LI+ M+  S++     
Sbjct  113  MMHLLLIGGSRLFWRVYRRYFIDNA--VEKKATLVVGAGQGGSVLIREML-RSQDMRMQP  169

Query  183  IITVQEKNHNMIGSTIQHLKISG-SDEIVSLVESKQIEAAVID-GSLPSEILRH------  234
            +++V++ +++   +  +++K+ G  ++I  LV   +I   +I   +L+   L +      
Sbjct  170  VLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICN  229

Query  235  --SYQLLTDAGVQDIKRSALLSDGKEAITSLSVEELLARHPKDLDTQTIETFIQNKCVLI  292
              + +L+  + ++D+  + L     + +  + VE+LL+R+P +LD   I   + NK +L+
Sbjct  230  IEGVELFKMPNIEDVLSGEL---EVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILV  286

Query  293  TGAGGSIGSEIALQCHRFGAKNLILIDHSEYNLYQIGEKLS---SAKLHLCNII----DH  345
            TGAGGSIGSEI  Q  +F+++++IL++H+E ++Y I + LS   + ++++  +I    + 
Sbjct  287  TGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEFVPVIADVQNK  346

Query  346  ETLDKIIDNTRPDIVIHAAAYKHVPLCEANIQTAIMNNVIGSRNVIDSAIKHEVPKIVII  405
              +  ++++ +P  V HAAA KHVPL E N + AI NN++G++NV +SA   EV+K+V+I
Sbjct  347  TRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMI  406

Query  406  STDKAVRPTNVMGTTKRIVELYAQNVDPKNSEI--VAVRFGNVLGSSGSVIPKFKSQIEA  463
            STDKAV P+NVMG+TKRI E+  Q+++  NS    VAVRFGNVLGS GSVIP FK+QIE+
Sbjct  407  STDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIES  466

Query  464  GGPLTLTHPDITRYFMLISEACQLVLQAAAIARGGELFILDMGESVKIADLAQTMIRLYA  523
            GGP+T+THP++TRYFM I+EA +LVLQA+A+A+GGE+F+LDMG +VKI DLA+ +IRL +
Sbjct  467  GGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG  526

Query  524  SMP--IEIVYTGLRPGEKLYEELLI-DESEQKTAFESIMIARSTFY  566
                 I I ++G+RPGEKLYEELL  +E + +  +E I  ++   Y
Sbjct  527  KKEEDIGIEFSGIRPGEKLYEELLNKNEIHPQQVYEKIYRGKVDHY  572

550) TPE_2560 in NC_022097


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  239 bits (891),  Expect = 3e-64, Method: Compositional matrix adjust.
 Identities = 183/432 (43%), Positives = 289/432 (67%), Gaps = 16/432 (3%)

Query  14   IVGAGFAGTAIAKEI-SSKEIFGKVSAFL---DDDPKKIGTKIDGVPVLGSISEAVRLIR  69
            +VGAG +G+ + +E+  S+++  ++ + L   DD  K+  T  + V V G + +   L++
Sbjct  145  VVGAGQGGSVLIREMLRSQDM--RMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVK  202

Query  70   IDSGAEALIAIPSISSERLREIFGILKNAGFSRIKLLPAISQIIDGSAHLVQARDIDPQD  129
                   +IAIP++S  RL EI  I +  G   +K+ P I +++ G  ++ + + ++ +D
Sbjct  203  KFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKM-PNIEDVLSGELEVNNLKKVEVED  261

Query  130  LLSRTPVKISLKKSLAYLRGKRVLITGAGGSIGSELARQLLSGGAERLYLFGHGENSIYQ  189
            LL+R PV + +      L  K +L+TGAGGSIGSE+ RQ+   +++++ L+GHGENSIY 
Sbjct  262  LLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYS  321

Query  190  IHKELKLLQSGGVGDKATIVPIIGELKDRNYMRYIINRLKCDAVFHTAAYKHVPLMEENP  249
            IH+EL    S   G++  +VP+I++++++  +  ++N +K  AV+H+AA KHVPLME NP
Sbjct  322  IHQEL----SKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNP  377

Query  250  VAVIENNVFGTKNLLDACLEFGVKKFVLISTDKAVEPVSVYGLSKMLNEKSVLQAAEKAK  309
               I NN++GTKN+ ++  E  V KFV+ISTDKAV+P +V G +K + E  +    +  +
Sbjct  378  HEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVI----QSLN  433

Query  310  NSNENSAYMFVRFGNVLGSRGSIFPLFVEQIKTGGPVTVTDKKMTRYFMTIPEACSLVLQ  369
            + N +++++ VRFGNVLGSRGS++PLF +QI +GGPVTVT+  MTRYFMTIPEA  LVLQ
Sbjct  434  EDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQ  493

Query  370  TGGVGKSGQSYLLDMGEPVNIFETAKQLIRYMGFEPEKDIKIEIIGVREGERLEEPLWSK  429
            +G+++++G+ ++LDMG PV+I + AK+LIR  G   E DI IE+ G+R GE+L E L +K
Sbjct  494  AGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIGIEFSGIRPGEKLYEELLNK  552

Query  430  SEYLEKTDYEKI  441
            +E   +  YEKI
Sbjct  553  NEIHPQQVYEKI  564

551) SpiGrapes_1668 in NC_016633


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  236 bits (881),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 192/478 (41%), Positives = 310/478 (65%), Gaps = 22/478 (4%)

Query  101  PFLIV--MDWS-SFLCIMGIRV---VYRSFLNRKNIIHANGLPKAVVYGAGELGSTIVRQ  154
            PFL +  + W   +L I G R+   VYR ++  + +     L    V GAG+ GS ++R+
Sbjct  103  PFLRLYFITWMMHLLLIGGSRLFWRVYRRYFIDNAVEKKATL----VVGAGQGGSVLIRE  158

Query  155  FQKG-NIPFHIVGFVDDDPAILGTYIVG-TRVLGTTEALGEVLVETQAKVLIIAISNIDQ  212
              ++ ++  + V  VDDD       I    +V G  E + E++   + K +IIAI+ + Q
Sbjct  159  MLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQ  218

Query  213  EHMFKAVDAAKEHGCDVKVIPSLFEVQQGAKELD-LRNLDYPDLLGRPLTFIDKKPIADM  271
             ++       + +G ++  +P++ +V  G  E++ L++++  DLLGR    +D   I+  
Sbjct  219  KRLNEINKICNIEGVELFKMPNIEDVLSGELEVNNLKKVEVEDLLGRDPVELDMALISRE  278

Query  272  VKGKRVLVTGSGGSIGSEICRQLLTYEPAQLVLLDIDETELHDLSLRLHNYQKEWSDLIV  331
            +  K +LVTG+GGSIGSEICRQ+  ++P +++LL+ +E  +  +   L +   ++ ++ V
Sbjct  279  LTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRIEF-V  337

Query  332  PVVCDIKNARKINQIYEKFQPQLVFHAAAYKHVPLQELYPEEAITTNIGGSYNVLKGAVD  391
            PV+ D++N  +I ++ + F+P  V+HAAA KHVPL E  P+EAI  NI G+ NV  +A +
Sbjct  338  PVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKE  397

Query  392  HKVERVVVISTDKAVNPTNVMGATKRVVEMLASMLTNEE--TEMVCVRFGNVLGSRGSML  449
              V + V+ISTDKAVNP+NVMGATKR+ EM+   L +++  T  V VRFGNVLGSRGS++
Sbjct  398  GEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVI  457

Query  450  PLFMDQIKAGVPITVTHKDIIRYFMAIPEAVGLVFKAASMAKGGEVMVLDMGQPVRIYDF  509
            PLF +QI +G P+TVTH ++ RYFM+IPEA  LV++A+++A+GGEV VLDMG+PV+I D+
Sbjct  458  PLFKNQIESGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDL  517

Query  510  AQKLVKYYGDGRSQVII--TGLRPGEKLYEELLANKDETIPTE--DKLVFKAKLENHV  563
            A++L++  G    ++ I  +G+RPGEKLYEELL NK+E  P +  +K ++++K+++ +
Sbjct  518  AKNLIRLSGKKEEDIGIEFSGIRPGEKLYEELL-NKNEIHPQQVYEK-IYRGKVDHYI  573

552) TDE0714 in NC_002967


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  236 bits (881),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 178/437 (41%), Positives = 286/437 (66%), Gaps = 11/437 (2%)

Query  7    QKTSIYIVGAGLAGTMIAHEI--SEKNIFGKVAAFLDDDPKKIGTKIDGIPVFGPISETV  64
            +K +  +VGAG +G+++ +E+  S+      V A  DD  K+  T  + + V G + +  
Sbjct  139  EKKATLVVGAGQGGSVLIREMLRSQDMRMQPVLAVDDDKNKQKMTITERVKVQGYVEDIP  198

Query  65   HLIRIDAGDEALIAIPSMRSERLREIYELLKSAGFSKIKLLPAISQIIDGSAHLVQAREI  124
            +L++       +IAIP++   RL EI  + +  G   +K+ P I +++ G  ++ + + +
Sbjct  199  ELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKM-PNIEDVLSGELEVNNLKKV  257

Query  125  DPQDLLTRTPVTISLKKSLAYLRGKRVLITGAGGSIGSELCRQLLSGGAERLYLFGHGEN  184
            + +DLL R PV + +      L  K +L+TGAGGSIGSE+CRQ+   +++++ L+GHGEN
Sbjct  258  EVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICRQVSKFDPQKIILLGHGEN  317

Query  185  SIYQIYKELKILQAGGVGDKATIVPVIGELKDREYMRYIIKQLKCDAVFHTAAYKHVPLM  244
            SIY I +EL    +   G++  +VPVI++++++  +  +++++K  AV+H+AA KHVPLM
Sbjct  318  SIYSIHQEL----SKTYGNRIEFVPVIADVQNKTRILEVMNEFKPYAVYHAAAHKHVPLM  373

Query  245  EENPVAVIENNVFGTKNLLDACIEFGVKRFVLISTDKAVEPVSVYGVSKLLSEKLVLQAA  304
            E NP   I NN++GTKN+ ++  E  V +FV+ISTDKAV+P +V G +K ++E ++    
Sbjct  374  EYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNVMGATKRIAEMVIQSLN  433

Query  305  ETVKEKKDSAYMFVRFGNVLGSRGSIFPLFVEQIQNGGPVTVTDKKMIRFFMTIPEACSL  364
            E   ++  ++++ VRFGNVLGSRGS++PLF +QI++GGPVTVT+  M R+FMTIPEA  L
Sbjct  434  E---DNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEMTRYFMTIPEASRL  490

Query  365  VLQTGGVGKSGESYLLDMGEPVNIYETAKQLISYMGFEPEKDIKIEIIGPREGERLEEPL  424
            VLQ+G+++++GE ++LDMG PV+I + AK+LI   G   E DI IE+ G R GE+L E L
Sbjct  491  VLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSG-KKEEDIGIEFSGIRPGEKLYEEL  549

Query  425  WSSTEYLEKTDYEKIMR  441
             +  E   +  YEKI R
Sbjct  550  LNKNEIHPQQVYEKIYR  566

553) B841_09350 in NC_021915


> U10927|24|G24|506700|AAA64643.1|Staphylococcus_aureus_M|+|13504..15303|cap1D|-|type 
1 capsule synthesis gene
Length=599

 Score =  217 bits (806),  Expect = 2e-57, Method: Compositional matrix adjust.
 Identities = 176/437 (41%), Positives = 284/437 (65%), Gaps = 24/437 (5%)

Query  139  LAWNTYQLH------SREPVIVIGAGLLGRHIIAELGDPQLGNDMAIKAVL---DDNPRM  189
            L W  Y+         + + +V+GAG  G  +I E+  +Q   DM +++VL   DD+ + 
Sbjct  124  LFWRVYRRYFIDNAVEKKATLVVGAGQGGSVLIREMLRSQ---DMRMQPVLAVDDDKNKQ  180

Query  190  HGARLHGVKVRGGLDQISEVAAQTGATTLIVAINGLGPTVKSKITAVAAELGLKVLVVPT  249
              +  + VKV+G +++I+E+  +     +I+AI  L+    + I  +    G+ ++ +P 
Sbjct  181  KMTITERVKVQGYVEDIPELVKKFRIKKIIIAIPTLSQKRLNEINKICNIEGVELFKMPN  240

Query  250  MEEINRIGSLELQEL---DLTSLMGRDQIVLDEDSISGLIRGRRVLVTGAGGSIGSELAR  306
            +E++   G LE+++L   ++  L+GRD + LD   IS  +  + +LVTGAGGSIGSE+ R
Sbjct  241  IEDVLS-GELEVNNLKKVEVEDLLGRDPVELDMALISRELTNKTILVTGAGGSIGSEICR  299

Query  307  QIHKYGPSELIMLDRDEGGLH--HTQLS-IYGHAMLDSKNIVLADIRDAARLKEIFLECR  363
            Q+ K++P  +I+L+++E ++   H +LS  YG+ +      V+AD+++ +R+ E+  E +
Sbjct  300  QVSKFDPQKIILLGHGENSIYSIHQELSKTYGNRI--EFVPVIADVQNKTRILEVMNEFK  357

Query  364  PEVVLHAAALKHQPLLEMYPQEAWLTNVEGTRNVLDASVACRTEVVVNVSTDKAANPVCA  423
            P  V HAAA KH PL+E  P+EA   N+ GT+NV +++        V +STDKA NP   
Sbjct  358  PYAVYHAAAHKHVPLMEYNPHEAIRNNILGTKNVAESAKEGEVSKFVMISTDKAVNPSNV  417

Query  424  LGDSKRIAERITAAYGAEYP-GTWVSVRFGNVLGSRGSVIETFRRQIETGGPVTVTHPEV  482
            +G +KRIAE +  +   + +  + V+VRFGNVLGSRGSVI  F+ QIE+GGPVTVTHPE+
Sbjct  418  MGATKRIAEMVIQSLNEDNSKTSFVAVRFGNVLGSRGSVIPLFKNQIESGGPVTVTHPEM  477

Query  483  RRYFMTIPEaaqlvlqaavvGESGETLVLDMGSPMPIVELAQGLMKIAGR--DDLEIVYT  540
             RYFMTIPEA++LVLQA+ ++++GE +VLDMG P+ IV+LA+ L++++G+  +D+ I ++
Sbjct  478  TRYFMTIPEASRLVLQAGALAQGGEVFVLDMGKPVKIVDLAKNLIRLSGKKEEDIGIEFS  537

Query  541  GLRPGEKMSEELLDDRE  557
            G+RPGEK+ EELL+  E
Sbjct  538  GIRPGEKLYEELLNKNE  554