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Homologs of cagA gene of NC_017366_P1

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) cagA
( YP_005775747.1 )

cag pathogenicity island protein

NC_017366
(Helicobacter pylori F32)

0.0

100

2) HMPREF0462_0869
( YP_005785436.1 )

cytotoxicity-associated immunodominantigen

NC_017375
(Helicobacter pylori 83)

0.0

3) cagA
( YP_005779046.1 )

cag pathogenicity island protein

NC_017368
(Helicobacter pylori F16)

0.0

4) cagA
( YP_005774524.1 )

cag pathogenicity island protein

NC_017365
(Helicobacter pylori F30)

0.0

5) MWE_0973
( YP_006338465.1 )

cytotoxin-associated protein A

NC_017926
(Helicobacter pylori XZ274)

0.0

6) K751_03370
( YP_007983654.1 )

cytochrome C oxidase subunit II

NC_021218
(Helicobacter pylori UM066)

0.0

7) cag26
( YP_005793164.1 )

cag pathogenicity island protein A

NC_017382
(Helicobacter pylori 51)

0.0

8) cagA
( YP_005777288.1 )

cag pathogenicity island protein

NC_017367
(Helicobacter pylori F57)

0.0

9) HPKB_0795
( YP_005762303.1 )

cytotoxin-associated protein A

NC_017354
(Helicobacter pylori 52)

0.0

10) cagA
( YP_005770141.1 )

cytotoxicity-associated immunodominant antigen A

NC_017360
(Helicobacter pylori 35A)

0.0

11) K747_06810
( YP_007979549.1 )

cytochrome C oxidase subunit II

NC_021215
(Helicobacter pylori UM032)

0.0

12) K748_08050
( YP_008337464.1 )

cytochrome C oxidase subunit II

NC_021882
(Helicobacter pylori UM298)

0.0

13) K749_01445
( YP_007980086.1 )

cytochrome C oxidase subunit II

NC_021216
(Helicobacter pylori UM299)

0.0

14) cagA
( YP_007536679.1 )

cag pathogenicity island protein

NC_020508
(Helicobacter pylori OK113)

0.0

15) HPSAT_04065
( YP_005768457.1 )

cag pathogenicity island protein (cagA, cag26)

NC_017359
(Helicobacter pylori Sat464)

0.0

16) cagA
( YP_007538420.1 )

cag pathogenicity island protein

NC_020509
(Helicobacter pylori OK310)

0.0

17) HPPN135_02705
( YP_005789758.1 )

cag pathogenicity island protein

NC_017379
(Helicobacter pylori Puno135)

0.0

18) HPAG1_0524
( YP_627265.1 )

cytotoxin-associated protein A

NC_008086
(Helicobacter pylori HPAG1)

0.0

19) HPLT_02705
( YP_005772684.1 )

cytotoxin-associated protein A

NC_017362
(Helicobacter pylori Lithuania75)

0.0

20) K750_05020
( YP_007982353.1 )

cytochrome C oxidase subunit II

NC_021217
(Helicobacter pylori UM037)

0.0

21) cagA
( YP_002301189.1 )

cytotoxin-associated protein A

NC_011498
(Helicobacter pylori P12)

0.0

22) HPPC_02715
( YP_003926831.1 )

cytotoxin-associated protein A

NC_014555
(Helicobacter pylori PeCan4)

0.0

23) HP0547
( NP_207343.1 )

cag pathogenicity island protein (cag26)

NC_000915
(Helicobacter pylori 26695)

0.0

24) C694_02825
( YP_006934471.1 )

cag pathogenicity island protein (cag26)

NC_018939
(Helicobacter pylori 26695)

0.0

25) C695_02825
( YP_006893036.1 )

cag pathogenicity island protein (cag26)

NC_018937
(Helicobacter pylori Rif1)

0.0

26) C730_02825
( YP_006936077.1 )

cag pathogenicity island protein (cag26)

NC_018938
(Helicobacter pylori Rif2)

0.0

27) HPSH169_02815
( YP_006225755.1 )

cag pathogenicity island protein CagA

NC_017740
(Helicobacter pylori Shi169)

0.0

28) HPSH417_02620
( YP_006224171.1 )

cag pathogenicity island protein CagA

NC_017739
(Helicobacter pylori Shi417)

0.0

29) HPELS_03850
( YP_005424890.1 )

cag pathogenicity island protein (cag26)

NC_017063
(Helicobacter pylori ELS37)

0.0

30) HPSNT_02820
( YP_005786704.1 )

cytotoxin-associated protein A

NC_017376
(Helicobacter pylori Santal49)

0.0

31) HPPN120_02680
( YP_005788210.1 )

cag pathogenicity island protein (cagA, cag26)

NC_017378
(Helicobacter pylori Puno120)

0.0

32) HPSJM_02765
( YP_003928464.1 )

cag pathogenicity island protein (cag26)

NC_014560
(Helicobacter pylori SJM180)

0.0

33) HPSH_04145
( YP_001910294.1 )

cag pathogenicity island protein CagA

NC_010698
(Helicobacter pylori Shi470)

0.0

34) cagA
( NP_223213.1 )

cag island protein, cytotoxicity associated immunodominant antigen

NC_000921
(Helicobacter pylori J99)

0.0

35) HPV225_0552
( YP_005763483.1 )

Cytotoxicity-associated immunodominant antigen

NC_017355
(Helicobacter pylori v225d)

0.0

36) hp2017_0529
( YP_005783518.1 )

cag island protein

NC_017374
(Helicobacter pylori 2017)

0.0

37) hp2018_0531
( YP_005791362.1 )

cag island protein

NC_017381
(Helicobacter pylori 2018)

0.0

38) cagA
( YP_005765053.1 )

cag island protein

NC_017357
(Helicobacter pylori 908)

0.0

39) cagA
( YP_003728762.1 )

cytotoxin-associated protein A

NC_014256
(Helicobacter pylori B8)

0.0

40) HPIN_04145
( YP_005782140.1 )

cytotoxin-associated protein A

NC_017372
(Helicobacter pylori India7)

0.0

41) cagA
( YP_002266135.1 )

cytotoxin-associated protein A

NC_011333
(Helicobacter pylori G27)

0.0

42) HPGAM_02795
( YP_005780282.1 )

cytotoxin-associated protein A

NC_017371
(Helicobacter pylori Gambia94/24)

0.0

43) HPPC18_02620
( YP_006228790.1 )

cag pathogenicity island protein CagA

NC_017742
(Helicobacter pylori PeCan18)

0.0

44) HPSH169_04745
( YP_006226126.1 )

cag pathogenicity island protein CagA

NC_017740
(Helicobacter pylori Shi169)

0.0

45) HPSH417_04540
( YP_006224537.1 )

cag pathogenicity island protein CagA

NC_017739
(Helicobacter pylori Shi417)

0.0

46) HPSH_04215
( YP_001910308.1 )

cag pathogenicity island protein CagA

NC_010698
(Helicobacter pylori Shi470)

0.0

47) HPSH112_04285
( YP_006227551.1 )

cag pathogenicity island protein CagA

NC_017741
(Helicobacter pylori Shi112)

0.0

• Sequence Alignments

1) cagA in NC_017366


> NC_017366_P1|24|G24|385215791|YP_005775747.1|Helicobacter_pylori_F32|+|32443..35964|cagA|HPF32_0523|cag 
pathogenicity island 
protein
Length=1173

 Score = 1741 bits (6613),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1173/1173 (100%), Positives = 1173/1173 (100%), Gaps = 0/1173 (0%)

Query  1     MTNETIDQTTTPDQTGFVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDKDNRQAFE  60
             MTNETIDQTTTPDQTGFVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDKDNRQAFE
Sbjct  1     MTNETIDQTTTPDQTGFVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDKDNRQAFE  60

Query  61    KISQLREEYankaiknpakknQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQRYQI  120
             KISQLREEYANKAIKNPAKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQRYQI
Sbjct  61    KISQLREEYANKAIKNPAKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQRYQI  120

Query  121   FTSWVSLQKDPSKINTQQIRNFMENVIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSD  180
             FTSWVSLQKDPSKINTQQIRNFMENVIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSD
Sbjct  121   FTSWVSLQKDPSKINTQQIRNFMENVIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSD  180

Query  181   EKFMGVFDESLKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPDFEQN  240
             EKFMGVFDESLKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPDFEQN
Sbjct  181   EKFMGVFDESLKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPDFEQN  240

Query  241   LATTTTDIQGLPPEARDLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIHNNAL  300
             LATTTTDIQGLPPEARDLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIHNNAL
Sbjct  241   LATTTTDIQGLPPEARDLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIHNNAL  300

Query  301   SSMLMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLNNGSGL  360
             SSMLMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLNNGSGL
Sbjct  301   SSMLMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLNNGSGL  360

Query  361   IIAGNEDGIKNPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSEKEKE  420
             IIAGNEDGIKNPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSEKEKE
Sbjct  361   IIAGNEDGIKNPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSEKEKE  420

Query  421   KFQTEIENFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGELSYTLKDYGKKQDK  480
             KFQTEIENFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGELSYTLKDYGKKQDK
Sbjct  421   KFQTEIENFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGELSYTLKDYGKKQDK  480

Query  481   ALDGETKTTLQGSLKYDGVMFVNYSNFKYTNASKSPNKGLGTTNGVSHLEANFSKVAVFN  540
             ALDGETKTTLQGSLKYDGVMFVNYSNFKYTNASKSPNKGLGTTNGVSHLEANFSKVAVFN
Sbjct  481   ALDGETKTTLQGSLKYDGVMFVNYSNFKYTNASKSPNKGLGTTNGVSHLEANFSKVAVFN  540

Query  541   LPNLNNLAITNYIRRDLEDKLWAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAVAEAK  600
             LPNLNNLAITNYIRRDLEDKLWAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAVAEAK
Sbjct  541   LPNLNNLAITNYIRRDLEDKLWAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAVAEAK  600

Query  601   NTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKIFALI  660
             NTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKIFALI
Sbjct  601   NTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKIFALI  660

Query  661   SQEASKEARVATFDPNLKGVRSELSDKLENINKNLKDFGKSFDELKSGKNNDFSKAEETL  720
             SQEASKEARVATFDPNLKGVRSELSDKLENINKNLKDFGKSFDELKSGKNNDFSKAEETL
Sbjct  661   SQEASKEARVATFDPNLKGVRSELSDKLENINKNLKDFGKSFDELKSGKNNDFSKAEETL  720

Query  721   KALKDSVKDLGINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVIINQK  780
             KALKDSVKDLGINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVIINQK
Sbjct  721   KALKDSVKDLGINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVIINQK  780

Query  781   ITDKVDNLNQAVSEIKLTGDFSKVEQALAELKNLSLDLGKNSDLQKSVKNGVNGTLVSNG  840
             ITDKVDNLNQAVSEIKLTGDFSKVEQALAELKNLSLDLGKNSDLQKSVKNGVNGTLVSNG
Sbjct  781   ITDKVDNLNQAVSEIKLTGDFSKVEQALAELKNLSLDLGKNSDLQKSVKNGVNGTLVSNG  840

Query  841   LSKTEATTLTKNFSDIRKElneklfgnsnnnnnglknnTEPIYAQVNKKKTGQATSPEEP  900
             LSKTEATTLTKNFSDIRKELNEKLFGNSNNNNNGLKNNTEPIYAQVNKKKTGQATSPEEP
Sbjct  841   LSKTEATTLTKNFSDIRKELNEKLFGNSNNNNNGLKNNTEPIYAQVNKKKTGQATSPEEP  900

Query  901   IYAQVAKKVSAKIDQLNEATSAINRKIDRINKIasagkgvggfsgagrsasPEPIYATID  960
             IYAQVAKKVSAKIDQLNEATSAINRKIDRINKIASAGKGVGGFSGAGRSASPEPIYATID
Sbjct  901   IYAQVAKKVSAKIDQLNEATSAINRKIDRINKIASAGKGVGGFSGAGRSASPEPIYATID  960

Query  961   FDEANQAGFPLRRSAAVNDLSKVGLSREQELTRRIGDLSQAVSEAKTGHFGNLEQKIDEL  1020
             FDEANQAGFPLRRSAAVNDLSKVGLSREQELTRRIGDLSQAVSEAKTGHFGNLEQKIDEL
Sbjct  961   FDEANQAGFPLRRSAAVNDLSKVGLSREQELTRRIGDLSQAVSEAKTGHFGNLEQKIDEL  1020

Query  1021  KDSTKKNALKLWVESAKQVPTSLQAKLDNYATNSHTRINSNVQSGTINEKATGMLTQKNP  1080
             KDSTKKNALKLWVESAKQVPTSLQAKLDNYATNSHTRINSNVQSGTINEKATGMLTQKNP
Sbjct  1021  KDSTKKNALKLWVESAKQVPTSLQAKLDNYATNSHTRINSNVQSGTINEKATGMLTQKNP  1080

Query  1081  EWLKLVNDKIVAHNVGSAPLSAYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDIKSSFVQF  1140
             EWLKLVNDKIVAHNVGSAPLSAYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDIKSSFVQF
Sbjct  1081  EWLKLVNDKIVAHNVGSAPLSAYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDIKSSFVQF  1140

Query  1141  LTNTFSTGSYSLMKANVEHGVKNTNTKGGFQKS  1173
             LTNTFSTGSYSLMKANVEHGVKNTNTKGGFQKS
Sbjct  1141  LTNTFSTGSYSLMKANVEHGVKNTNTKGGFQKS  1173

2) HMPREF0462_0869 in NC_017375


> NC_017366_P1|24|G24|385215791|YP_005775747.1|Helicobacter_pylori_F32|+|32443..35964|cagA|HPF32_0523|cag 
pathogenicity island 
protein
Length=1173

 Score = 1709 bits (6489),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1132/1177 (97%), Positives = 1156/1177 (99%), Gaps = 5/1177 (0%)

Query  1     MTNETIDQTITPDQTPNQTDFVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDRDNR  60
             MTNETIDQT TPDQT    +FVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKND+DNR
Sbjct  1     MTNETIDQTTTPDQT----GFVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDKDNR  56

Query  61    QAFEKISQLREEYANKAIKNPTKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQ  120
             QAFEKISQLREEYANKAIKNP+KKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQ
Sbjct  57    QAFEKISQLREEYANKAIKNPAKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQ  116

Query  121   RYQIFTSWVSLQKDPSKINTQQIQNFMENIIQPPISDDKEKAEFLRSAKQSFAGIIIGNQ  180
             RYQIFTSWVSLQKDPSKINTQQI+NFMEN+IQPPISDDKEKAEFLRSAKQSFAGIIIGNQ
Sbjct  117   RYQIFTSWVSLQKDPSKINTQQIRNFMENVIQPPISDDKEKAEFLRSAKQSFAGIIIGNQ  176

Query  181   IRSDEKFMGVFDESLKARQEAEKNAEPAGEDWLDIFLSFVFNKKQSSDLKETLNQEPRPD  240
             IRSDEKFMGVFDESLKARQEAEKNAEPAG DWLDIFLSFVFNKKQSSDLKETLNQEPRPD
Sbjct  177   IRSDEKFMGVFDESLKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPD  236

Query  241   FEQNLATTTTDIQGLPPEARDLLDERGNFSKFTLGDVEMLDVEGVADKDPNYKFNQLLIH  300
             FEQNLATTTTDIQGLPPEARDLLDERGNF KFTLGDVEMLDVEGVADKDPNYKFNQLLIH
Sbjct  237   FEQNLATTTTDIQGLPPEARDLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIH  296

Query  301   NNALSSVLMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKDQQGSNVATLINAHLNN  360
             NNALSS+LMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYK+QQG+NVATLINAHLNN
Sbjct  297   NNALSSMLMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLNN  356

Query  361   GSGLIIAGNEDGIKNPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSK  420
             GSGLIIAGNEDGIKNPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLS 
Sbjct  357   GSGLIIAGNEDGIKNPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSE  416

Query  421   EEKEKFQTEIENFQKDRKAYLDALGNDHIAFVSKKDPNHLALVTEFGNGELSYTLKDYGK  480
              EKEKFQTEIENFQKDRKAYLDALGNDHIAFVSKKDP+HLALVTEFGNGELSYTLKDYGK
Sbjct  417   KEKEKFQTEIENFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGELSYTLKDYGK  476

Query  481   KQDKALDGETKTTLQGSLKYDGVMFVNYSNFKYTNASKSPNKGLGATNGVSHLEANFSKV  540
             KQDKALDGETKTTLQGSLKYDGVMFVNYSNFKYTNASKSPNKGLG+TNGVSHLEANFSKV
Sbjct  477   KQDKALDGETKTTLQGSLKYDGVMFVNYSNFKYTNASKSPNKGLGTTNGVSHLEANFSKV  536

Query  541   AVFNLPNLNNLAITNYIRRDLEDKLLAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAV  600
             AVFNLPNLNNLAITNYIRRDLEDKL AKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAV
Sbjct  537   AVFNLPNLNNLAITNYIRRDLEDKLWAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAV  596

Query  601   AEAKNTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKI  660
             AEAKNTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKI
Sbjct  597   AEAKNTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKI  656

Query  661   FALINKEASKEARAAAFDPNLKGIRIELSDKLENINKNLKDFGKSFDELKNGKNNDFSKA  720
             FALI++EASKEAR A+FDPNLKG+R ELSDKLENINKNLKDFGKSFDELK+GKNNDFSKA
Sbjct  657   FALISQEASKEARVATFDPNLKGVRSELSDKLENINKNLKDFGKSFDELKSGKNNDFSKA  716

Query  721   EETLKALKDSVKDLGINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVI  780
             EETLKALKDSVKDLGINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVI
Sbjct  717   EETLKALKDSVKDLGINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVI  776

Query  781   INQKITDKVDNLNQAVSETKLTGDFSKVEQALAELKNLSLDFGKNSDLQKSVKngvngtl  840
             INQKITDKVDNLNQAVSE KLTGDFSKVEQALAELKNLSLD+GKNSDLQKSVKNGVNGTL
Sbjct  777   INQKITDKVDNLNQAVSEIKLTGDFSKVEQALAELKNLSLDLGKNSDLQKSVKNGVNGTL  836

Query  841   vgnglSKTEATTLTKNFSEIRKElneklfgnsnnnnnglknnTEPIYAQVNKKKTGQATS  900
             V+NGLSKTEATTLTKNFS+IRKELNEKLFGNSNNNNNGLKNNTEPIYAQVNKKKTGQATS
Sbjct  837   VSNGLSKTEATTLTKNFSDIRKELNEKLFGNSNNNNNGLKNNTEPIYAQVNKKKTGQATS  896

Query  901   PEEPIYAQVAKKVSAKIDQLNEATLAINRKIDRINKIASAGKGVGNFSGAERSASPEPIY  960
             PEEPIYAQVAKKVSAKIDQLNEAT AINRKIDRINKIASAGKGVG FSGA RSASPEPIY
Sbjct  897   PEEPIYAQVAKKVSAKIDQLNEATSAINRKIDRINKIASAGKGVGGFSGAGRSASPEPIY  956

Query  961   ATIDFDEANQAGFPLRRSAAVNDLSKVGLSREQELTRRIGDLNQAVSKAKTGYFDNLEQK  1020
             ATIDFDEANQAGFPLRRSAAVNDLSKVGLSREQELTRRIGDL+QAVS AKTG F+NLEQK
Sbjct  957   ATIDFDEANQAGFPLRRSAAVNDLSKVGLSREQELTRRIGDLSQAVSEAKTGHFGNLEQK  1016

Query  1021  IDELKDSTKKNALKLWVESAKQVPAGLQAKLDNYATNSHTRINSNVQTGTINEKATGMLT  1080
             IDELKDSTKKNALKLWVESAKQVP++LQAKLDNYATNSHTRINSNVQ+GTINEKATGMLT
Sbjct  1017  IDELKDSTKKNALKLWVESAKQVPTSLQAKLDNYATNSHTRINSNVQSGTINEKATGMLT  1076

Query  1081  QKNPEWLKLVNDKIVAHNVGSAHLSEYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDIKSS  1140
             QKNPEWLKLVNDKIVAHNVGSA LS YDKIGFNQKNMKDYSDSFKFSTKLNNAVKDIKSS
Sbjct  1077  QKNPEWLKLVNDKIVAHNVGSAPLSAYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDIKSS  1136

Query  1141  FVQFLTNTFSTGSYSLMKANVEHGVKNT-TKSGFQKS  1176
             FVQFLTNTFSTGSYSLMKANVEHGVKNT TK+GFQKS
Sbjct  1137  FVQFLTNTFSTGSYSLMKANVEHGVKNTNTKGGFQKS  1173

3) cagA in NC_017368


> NC_017366_P1|24|G24|385215791|YP_005775747.1|Helicobacter_pylori_F32|+|32443..35964|cagA|HPF32_0523|cag 
pathogenicity island 
protein
Length=1173

 Score = 1682 bits (6386),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1136/1173 (97%), Positives = 1164/1173 (99%), Gaps = 1/1173 (0%)

Query  1     MTNETIDQTTTPDQTGFVPQRFINNLQVAFIKVDNAVASFDPDQKSIVDKNDKDNRQAFE  60
             MTNETIDQTTTPDQTGFVPQRFINNLQVAFIKVDNAVASFDPDQK+IVDKNDKDNRQAFE
Sbjct  1     MTNETIDQTTTPDQTGFVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDKDNRQAFE  60

Query  61    KISQLREEYankaiknpakknQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQRYQI  120
             KISQLREEYANKAIKNPAKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQRYQI
Sbjct  61    KISQLREEYANKAIKNPAKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQRYQI  120

Query  121   FTSWVSLQKDPSKINTQQIRNFMENVIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSD  180
             FTSWVSLQKDPSKINTQQIRNFMENVIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSD
Sbjct  121   FTSWVSLQKDPSKINTQQIRNFMENVIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSD  180

Query  181   EKFMGVFDESLKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPDFEQN  240
             EKFMGVFDESLKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPDFEQN
Sbjct  181   EKFMGVFDESLKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPDFEQN  240

Query  241   LATTTTDIQGLPPEARDLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIHNNAL  300
             LATTTTDIQGLPPEARDLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIHNNAL
Sbjct  241   LATTTTDIQGLPPEARDLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIHNNAL  300

Query  301   SSMLMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKDQQGNNVATLINAHLNNDSGL  360
             SSMLMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYK+QQGNNVATLINAHLNN+SGL
Sbjct  301   SSMLMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLNNGSGL  360

Query  361   IIAGNEDGIKNPSFYLYKEDQLTGLKQAMSQEEIQNKVDFMEFLAQNNAKLDNLSEKEKE  420
             IIAGNEDGIKNPSFYLYKEDQLTGLKQA+SQEEIQNKVDFMEFLAQNNAKLDNLSEKEKE
Sbjct  361   IIAGNEDGIKNPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSEKEKE  420

Query  421   KFQAEIENFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGEVSYTLKDYGKKQDK  480
             KFQ+EIENFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGE+SYTLKDYGKKQDK
Sbjct  421   KFQTEIENFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGELSYTLKDYGKKQDK  480

Query  481   ALDGETKTTLQGNLKYDGVMFVDYSNFKYTNASKSPDKGVGATNGVSHLEANFSKVAVFN  540
             ALDGETKTTLQG+LKYDGVMFV+YSNFKYTNASKSP+KG+G+TNGVSHLEANFSKVAVFN
Sbjct  481   ALDGETKTTLQGSLKYDGVMFVNYSNFKYTNASKSPNKGLGTTNGVSHLEANFSKVAVFN  540

Query  541   LPNLNNLAITNYIRRDLEDKLWAKGLSSQEANKLIKDFLNSNKEMVGKVLNFNKAVAEAK  600
             LPNLNNLAITNYIRRDLEDKLWAKGLS+QEANKLIKDFLNSNKEMVGKV NFNKAVAEAK
Sbjct  541   LPNLNNLAITNYIRRDLEDKLWAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAVAEAK  600

Query  601   NTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKIFALI  660
             NTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKIFALI
Sbjct  601   NTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKIFALI  660

Query  661   NQEASKEARAAVFDPNLKGIRSELSDKLENINKNLKDFGKSFDELKNGKNNDFSKAEETL  720
             +QEASKEAR A FDPNLKG+RSELSDKLENINKNLKDFGKSFDELK+GKNNDFSKAEETL
Sbjct  661   SQEASKEARVATFDPNLKGVRSELSDKLENINKNLKDFGKSFDELKSGKNNDFSKAEETL  720

Query  721   KALKDSVKDLGINPEWISKIENLNVALNDFKNGKNKDFSKVTQAKSDLENSIKDVIINQK  780
             KALKDSVKDLGINPEWISKIENLN ALNDFKNGKNKDFSKVTQAKSDLENSIKDVIINQK
Sbjct  721   KALKDSVKDLGINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVIINQK  780

Query  781   ITDKVDNLNQAVSETKLTGDFSKVEQALAELKSLSLDLGKNSDLQKSVKngvngtlvgng  840
             ITDKVDNLNQAVSE KLTGDFSKVEQALAELK+LSLDLGKNSDLQKSVKNGVNGTLV+NG
Sbjct  781   ITDKVDNLNQAVSEIKLTGDFSKVEQALAELKNLSLDLGKNSDLQKSVKNGVNGTLVSNG  840

Query  841   lSKTEATTLTKNFSDIRKELneklfgnsnnnnnglknsAEPIYAKVNKKKTGQATSPEEP  900
             LSKTEATTLTKNFSDIRKELNEKLFGNSNNNNNGLKN++EPIYA+VNKKKTGQATSPEEP
Sbjct  841   LSKTEATTLTKNFSDIRKELNEKLFGNSNNNNNGLKNNTEPIYAQVNKKKTGQATSPEEP  900

Query  901   IYAQVAKKVSAKIDQLNESTSAINRKIDRINKIasagkgvggfsgagrsasPEPIYATID  960
             IYAQVAKKVSAKIDQLNE+TSAINRKIDRINKIASAGKGVGGFSGAGRSASPEPIYATID
Sbjct  901   IYAQVAKKVSAKIDQLNEATSAINRKIDRINKIASAGKGVGGFSGAGRSASPEPIYATID  960

Query  961   FDEANQAGFPLRRSAAVNDLSKVGLSREQELTRRIGDLNQAVSEAKTGHFDNLEQKIDEL  1020
             FDEANQAGFPLRRSAAVNDLSKVGLSREQELTRRIGDL+QAVSEAKTGHF+NLEQKIDEL
Sbjct  961   FDEANQAGFPLRRSAAVNDLSKVGLSREQELTRRIGDLSQAVSEAKTGHFGNLEQKIDEL  1020

Query  1021  KDSTKKNALKLWVESAKQVPTGLQAKLDNYATNSHTRINSNVHNGAINEKATGMLTQKNP  1080
             KDSTKKNALKLWVESAKQVPT+LQAKLDNYATNSHTRINSNV++G+INEKATGMLTQKNP
Sbjct  1021  KDSTKKNALKLWVESAKQVPTSLQAKLDNYATNSHTRINSNVQSGTINEKATGMLTQKNP  1080

Query  1081  EWLKLVNDKIVAHNVGSAHLSEYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDIKSSFVQF  1140
             EWLKLVNDKIVAHNVGSA LS YDKIGFNQKNMKDYSDSFKFSTKLNNAVKDIKSSFVQF
Sbjct  1081  EWLKLVNDKIVAHNVGSAPLSAYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDIKSSFVQF  1140

Query  1141  LTNTFSTGSYSLTKANVEHGVKNT-TKSGFQKS  1172
             LTNTFSTGSYSL KANVEHGVKNT TK+GFQKS
Sbjct  1141  LTNTFSTGSYSLMKANVEHGVKNTNTKGGFQKS  1173

4) cagA in NC_017365


> NC_017366_P1|24|G24|385215791|YP_005775747.1|Helicobacter_pylori_F32|+|32443..35964|cagA|HPF32_0523|cag 
pathogenicity island 
protein
Length=1173

 Score = 1682 bits (6386),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1119/1177 (96%), Positives = 1152/1177 (98%), Gaps = 7/1177 (0%)

Query  1     MTNETIDQTITPDQTPNQTDFVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDRDNR  60
             MTNETIDQT TPDQT    +FVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKND+DNR
Sbjct  1     MTNETIDQTTTPDQT----GFVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDKDNR  56

Query  61    QAFEKISQLREEYANKAIKNPTKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQ  120
             QAFEKISQLREEYANKAIKNP+KKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQ
Sbjct  57    QAFEKISQLREEYANKAIKNPAKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQ  116

Query  121   RYQIFTSWVSLQKDPSKINTQQIRNFMENIIQPPISDDKEKAEFLRSAKQSFAGIIIGNQ  180
             RYQIFTSWVSLQKDPSKINTQQIRNFMEN+IQPPISDDKEKAEFLRSAKQSFAGIIIGNQ
Sbjct  117   RYQIFTSWVSLQKDPSKINTQQIRNFMENVIQPPISDDKEKAEFLRSAKQSFAGIIIGNQ  176

Query  181   IRSDEKFMGVFDESLKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPD  240
             IRSDEKFMGVFDESLKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPD
Sbjct  177   IRSDEKFMGVFDESLKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPD  236

Query  241   FEQNLATTTTDIQGLPPESRDLLDERGNFFKFTLGDMEMLDVEGVADKDPNYKFNQLLIH  300
             FEQNLATTTTDIQGLPPE+RDLLDERGNFFKFTLGD+EMLDVEGVADKDPNYKFNQLLIH
Sbjct  237   FEQNLATTTTDIQGLPPEARDLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIH  296

Query  301   NNALSSVLMGGHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLRN  360
             NNALSS+LMG+HSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHL N
Sbjct  297   NNALSSMLMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLNN  356

Query  361   GSGLVIVGNEDGIKNPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSE  420
             GSGL+I GNEDGIKNPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSE
Sbjct  357   GSGLIIAGNEDGIKNPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSE  416

Query  421   KEKEKFQTEIEDFQKDRKAYLDALGNDRIAFVSKKDPKHLALVTEFGNGEVSYTLKDYGK  480
             KEKEKFQTEIE+FQKDRKAYLDALGND+IAFVSKKDPKHLALVTEFGNGE+SYTLKDYGK
Sbjct  417   KEKEKFQTEIENFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGELSYTLKDYGK  476

Query  481   KQDKALDGETKTTLQGSLKYDGVMFVNYSNFKYTNASKSPDKGVGTTNGVSHLEANFSKV  540
             KQDKALDGETKTTLQGSLKYDGVMFVNYSNFKYTNASKSP+KG+GTTNGVSHLEANFSKV
Sbjct  477   KQDKALDGETKTTLQGSLKYDGVMFVNYSNFKYTNASKSPNKGLGTTNGVSHLEANFSKV  536

Query  541   AVFNLPNLNNLAITNYIRRDLEDKLLAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAV  600
             AVFNLPNLNNLAITNYIRRDLEDKL AKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAV
Sbjct  537   AVFNLPNLNNLAITNYIRRDLEDKLWAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAV  596

Query  601   AEAKNTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKI  660
             AEAKNTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKI
Sbjct  597   AEAKNTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKI  656

Query  661   FALINQEASKEARAAAFDPNLKGIRSELSDKLENINKNLKDFGKSVDELKNGKNNDFSKA  720
             FALI+QEASKEAR A+FDPNLKG+RSELSDKLENINKNLKDFGKS DELK+GKNNDFSKA
Sbjct  657   FALISQEASKEARVATFDPNLKGVRSELSDKLENINKNLKDFGKSFDELKSGKNNDFSKA  716

Query  721   EETLKALKDSVKDLGINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVI  780
             EETLKALKDSVKDLGINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVI
Sbjct  717   EETLKALKDSVKDLGINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVI  776

Query  781   INQKITDKVDNLNQAVSETKLTGDFSKVEQALAELKSLSLDLGKNSDLQKSVKngvngtl  840
             INQKITDKVDNLNQAVSE KLTGDFSKVEQALAELK+LSLDLGKNSDLQKSVKNGVNGTL
Sbjct  777   INQKITDKVDNLNQAVSEIKLTGDFSKVEQALAELKNLSLDLGKNSDLQKSVKNGVNGTL  836

Query  841   vgnglSKTEATTLTKNFSDIRKELnek--lfgnsnnnnnglknePIYAQVNKKKAGQVAS  898
             V+NGLSKTEATTLTKNFSDIRKELNEK    +N+NNN    + EPIYAQVNKKK+GQ +S
Sbjct  837   VSNGLSKTEATTLTKNFSDIRKELNEKLFGNSNNNNNGLKNNTEPIYAQVNKKKTGQATS  896

Query  899   PEEPIYAQVAKKVSAKIDQLNEATSAINRKIDRINKIasagkgvggfsgagqsasPEPIY  958
             PEEPIYAQVAKKVSAKIDQLNEATSAINRKIDRINKIASAGKGVGGFSGAG+SASPEPIY
Sbjct  897   PEEPIYAQVAKKVSAKIDQLNEATSAINRKIDRINKIASAGKGVGGFSGAGRSASPEPIY  956

Query  959   ATIDFDDANQAGFPLRRSAAVNDLSKVGLSREQELTRRIGDLNQAVSEAKTGRFDNLEQK  1018
             ATIDFD+ANQAGFPLRRSAAVNDLSKVGLSREQELTRRIGDL+QAVSEAKTG+F+NLEQK
Sbjct  957   ATIDFDEANQAGFPLRRSAAVNDLSKVGLSREQELTRRIGDLSQAVSEAKTGHFGNLEQK  1016

Query  1019  IDELKDSTKKNALKLWVESAKQVPIGLQAKLDNYATNSHTRINSNVQSGTINEKATGMLT  1078
             IDELKDSTKKNALKLWVESAKQVP +LQAKLDNYATNSHTRINSNVQSGTINEKATGMLT
Sbjct  1017  IDELKDSTKKNALKLWVESAKQVPTSLQAKLDNYATNSHTRINSNVQSGTINEKATGMLT  1076

Query  1079  QRNPEWLKLVNDKIVAHNVGSAHLSEYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDIKSS  1138
             Q+NPEWLKLVNDKIVAHNVGSA LS YDKIGFNQKNMKDYSDSFKFSTKLNNAVKDIKSS
Sbjct  1077  QKNPEWLKLVNDKIVAHNVGSAPLSAYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDIKSS  1136

Query  1139  FVQFLTNTFSTGSYSLMKANVEHGVKNT-TKSGFQKS  1174
             FVQFLTNTFSTGSYSLMKANVEHGVKNT TK+GFQKS
Sbjct  1137  FVQFLTNTFSTGSYSLMKANVEHGVKNTNTKGGFQKS  1173

5) MWE_0973 in NC_017926


> NC_017366_P1|24|G24|385215791|YP_005775747.1|Helicobacter_pylori_F32|+|32443..35964|cagA|HPF32_0523|cag 
pathogenicity island 
protein
Length=1173

 Score = 1670 bits (6340),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1097/1197 (92%), Positives = 1153/1197 (97%), Gaps = 24/1197 (2%)

Query  1     MTNETIDQTTTPDQTLNQTDFVPQRFINNLQVAFLKVDDAVASFDPDQKPIVDKNDRDNR  60
             MTNETIDQTTTPDQT    +FVPQRFINNLQVAF+KVD+AVASFDPDQKPIVDKND+DNR
Sbjct  1     MTNETIDQTTTPDQT----GFVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDKDNR  56

Query  61    QAFEKISQLREEYANKAIKNPTKKNQYFSDFINKSNDLINKDNLIAVDSSVESFKKFGDQ  120
             QAFEKISQLREEYANKAIKNP+KKNQYFSDFINKSNDLINKDNLIAVDSSVESF+KFGDQ
Sbjct  57    QAFEKISQLREEYANKAIKNPAKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQ  116

Query  121   RYQIFTSWVSLQKDPSKINTQQIRNFMENIIQPPISDDKEKAEFLRSAKQSFAGIIIGNQ  180
             RYQIFTSWVSLQKDPSKINTQQIRNFMEN+IQPPISDDKEKAEFLRSAKQSFAGIIIGNQ
Sbjct  117   RYQIFTSWVSLQKDPSKINTQQIRNFMENVIQPPISDDKEKAEFLRSAKQSFAGIIIGNQ  176

Query  181   IRSDEKFMGVFDESLKERQEAEKNGEPDGGDWLDIFLSFVFNKKQSSDLKETLHQEPRPD  240
             IRSDEKFMGVFDESLK RQEAEKN+EP GGDWLDIFLSFVFNKKQSSDLKETL+QEPRPD
Sbjct  177   IRSDEKFMGVFDESLKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPD  236

Query  241   FEQNIATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDAEGVADIDPNYKFNQLLIH  300
             FEQN+ATTTTDIQGLPPEARDLLDERGNF KFTLGD+EMLD EGVAD DPNYKFNQLLIH
Sbjct  237   FEQNLATTTTDIQGLPPEARDLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIH  296

Query  301   NNALSSVLMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGSNVATLINAHLNN  360
             NNALSS+LMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQG+NVATLINAHLNN
Sbjct  297   NNALSSMLMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLNN  356

Query  361   GSGLVIAGNEDGIKNPSFYLYKQDQLTGLKQALSQEEIQNKVDFMEFLAQNNARLDSLSE  420
             GSGL+IAGNEDGIKNPSFYLYK+DQLTGLKQALSQEEIQNKVDFMEFLAQNNA+LD+LSE
Sbjct  357   GSGLIIAGNEDGIKNPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSE  416

Query  421   KEKEKFQTEIEDFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGEVSYTLKDYGK  480
             KEKEKFQTEIE+FQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGE+SYTLKDYGK
Sbjct  417   KEKEKFQTEIENFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGELSYTLKDYGK  476

Query  481   KQDKALDGETKTTLQGSLKYDGVMFVNYSNFKYTNASKSPDKGVGTTNGVSHLEANFSKV  540
             KQDKALDGETKTTLQGSLKYDGVMFVNYSNFKYTNASKSP+KG+GTTNGVSHLEANFSKV
Sbjct  477   KQDKALDGETKTTLQGSLKYDGVMFVNYSNFKYTNASKSPNKGLGTTNGVSHLEANFSKV  536

Query  541   AVFNLPNLNNLAITNYIRRDLEDKLWAKGLSSQEANKLIKDFLNSNKELVGKVSNFNKAV  600
             AVFNLPNLNNLAITNYIRRDLEDKLWAKGLS+QEANKLIKDFLNSNKE+VGKVSNFNKAV
Sbjct  537   AVFNLPNLNNLAITNYIRRDLEDKLWAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAV  596

Query  601   AEAKNTGNYDEVKKAQKDLEKSIRKREHLEKEVAKKLESRNDNKNGMEAKAQANSQKDKI  660
             AEAKNTGNYDEVKKAQKDLEKS+RKREHLEKEVAKKLESRNDNKN MEAKAQANSQKDKI
Sbjct  597   AEAKNTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKI  656

Query  661   FALINQEASKEARAAAFDPNLKGIRSELSDKLENINKNLKDFGKSFDELKNGNNKDFSKA  720
             FALI+QEASKEAR A+FDPNLKG+RSELSDKLENINKNLKDFGKSFDELK+G+N+DFSKA
Sbjct  657   FALISQEASKEARVATFDPNLKGVRSELSDKLENINKNLKDFGKSFDELKSGKNNDFSKA  716

Query  721   EETLKTLKDSMKDLGINPEWISKVENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVS  780
             EETLK+LKDS+KDLGINPEWISK+ENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDV 
Sbjct  717   EETLKALKDSVKDLGINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVI  776

Query  781   INQKITDKVDNLNQAVSEAKLTGDFSKVEQALAELKNLSLDQIGKNSDLQKSVKngvngt  840
             INQKITDKVDNLNQAVSE KLTGDFSKVEQALAELKNLSLD +GKNSDLQKSVKNGVNGT
Sbjct  777   INQKITDKVDNLNQAVSEIKLTGDFSKVEQALAELKNLSLD-LGKNSDLQKSVKNGVNGT  835

Query  841   lvgnglSKTEATTLTKNFSDIRKElneklfgnsnnnnnglknnTEPIYAQVNKKKAGQAT  900
             LV+NGLSKTEATTLTKNFSDIRKELNEKLFGNSNNNNNGLKNNTEPIYAQVNKKK+GQAT
Sbjct  836   LVSNGLSKTEATTLTKNFSDIRKELNEKLFGNSNNNNNGLKNNTEPIYAQVNKKKTGQAT  895

Query  901   SPEEPIYAQVNKKKAGQATSPEEPIYTQVAKKVNARIDRLNKIASTINGKIDQLNRTASA  960
             SPEEPIYA                   QVAKKV+A+ID+LN  +S+IN KID++N+ ASA
Sbjct  896   SPEEPIYA-------------------QVAKKVSAKIDQLNEATSAINRKIDRINKIASA  936

Query  961   NKGVGDFSGVGQAASPEPIYATIDFDEANQAGFPLRRSAAVNDLSKVGLSREQELTRRIG  1020
              KGVG+FSG G++ASPEPIYATIDFDEANQAGFPLRRSAAVNDLSKVGLSREQELTRRIG
Sbjct  937   GKGVGGFSGAGRSASPEPIYATIDFDEANQAGFPLRRSAAVNDLSKVGLSREQELTRRIG  996

Query  1021  DLNQAVSEAKTGHFGKLEQKIDELKDSTKKNAVSLWVESAKQVPTGLQAKLDNYATNSHT  1080
             DL+QAVSEAKTGHFG+LEQKIDELKDSTKKNA+ LWVESAKQVPT+LQAKLDNYATNSHT
Sbjct  997   DLSQAVSEAKTGHFGNLEQKIDELKDSTKKNALKLWVESAKQVPTSLQAKLDNYATNSHT  1056

Query  1081  RINSNVKNGGINEKATGMLTQKNPEWLKLVNNKIVAHNVGSIPLSDYDKIGFNQKNMKDY  1140
             RINSNV++G INEKATGMLTQKNPEWLKLVN+KIVAHNVGS PLS YDKIGFNQKNMKDY
Sbjct  1057  RINSNVQSGTINEKATGMLTQKNPEWLKLVNDKIVAHNVGSAPLSAYDKIGFNQKNMKDY  1116

Query  1141  SDSFKFSTKLNNAVKDIKSSFVQFLTNTFSQGSYNLMKANVEHGVKNTNTKSGFQKS  1197
             SDSFKFSTKLNNAVKDIKSSFVQFLTNTFS GSY+LMKANVEHGVKNTNTK+GFQKS
Sbjct  1117  SDSFKFSTKLNNAVKDIKSSFVQFLTNTFSTGSYSLMKANVEHGVKNTNTKGGFQKS  1173

6) K751_03370 in NC_021218


> NC_017366_P1|24|G24|385215791|YP_005775747.1|Helicobacter_pylori_F32|+|32443..35964|cagA|HPF32_0523|cag 
pathogenicity island 
protein
Length=1173

 Score = 1665 bits (6322),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1118/1157 (97%), Positives = 1146/1157 (99%), Gaps = 2/1157 (0%)

Query  21    FVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDRDNRQAFEKISQLREEYankaikn  80
             FVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKND+DNRQAFEKISQLREEYANKAIKN
Sbjct  17    FVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDKDNRQAFEKISQLREEYANKAIKN  76

Query  81    pakknQYFSDFINKSNDLINKDNLIAVDSSVESFKKFGDQRYQIFTSWVSLQKDPSKINT  140
             PAKKNQYFSDFINKSNDLINKDNLIAVDSSVESF+KFGDQRYQIFTSWVSLQKDPSKINT
Sbjct  77    PAKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQRYQIFTSWVSLQKDPSKINT  136

Query  141   QQIQNFMENIIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSDQKFMGVFDESLKERQE  200
             QQI+NFMEN+IQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSD+KFMGVFDESLK RQE
Sbjct  137   QQIRNFMENVIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSDEKFMGVFDESLKARQE  196

Query  201   AEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLHQEPRPDFEQNLATTTTNIQGLPPEAR  260
             AEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETL+QEPRPDFEQNLATTTT+IQGLPPEAR
Sbjct  197   AEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPDFEQNLATTTTDIQGLPPEAR  256

Query  261   DLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIHNNALSSVLMGSHSNIEPEKV  320
             DLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIHNNALSS+LMGSHSNIEPEKV
Sbjct  257   DLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIHNNALSSMLMGSHSNIEPEKV  316

Query  321   SLLYGDNGGPEARHDWNATVGYKDQQGNNVATLINAHLNNGSGLIIAGNENGIKNPSFYL  380
             SLLYGDNGGPEARHDWNATVGYK+QQGNNVATLINAHLNNGSGLIIAGNE+GIKNPSFYL
Sbjct  317   SLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLNNGSGLIIAGNEDGIKNPSFYL  376

Query  381   YKEDQLTGLKQAMSQEEIQNKVDFMEFLAKNNAKLDNLSKEEKEKFQTEIGNFQKDRKAY  440
             YKEDQLTGLKQA+SQEEIQNKVDFMEFLA+NNAKLDNLS  EKEKFQTEI NFQKDRKAY
Sbjct  377   YKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSEKEKEKFQTEIENFQKDRKAY  436

Query  441   LDALGNDHIAFVSKKDSKHLALVTEFGNGEVSYTLKDYGKKQDKALDGETKTTLQGSLKY  500
             LDALGNDHIAFVSKKD+KHLALVTEFGNGE+SYTLKDYGKKQDKALDGETKTTLQGSLKY
Sbjct  437   LDALGNDHIAFVSKKDPKHLALVTEFGNGELSYTLKDYGKKQDKALDGETKTTLQGSLKY  496

Query  501   DGVMFVNYSNFKYTNASKSPDKGVGTTNGVSHLEANFSKVAVFNLPNLNNLAITNYIRRD  560
             DGVMFVNYSNFKYTNASKSP+KG+GTTNGVSHLEANFSKVAVFNLPNLNNLAITNYIRRD
Sbjct  497   DGVMFVNYSNFKYTNASKSPNKGLGTTNGVSHLEANFSKVAVFNLPNLNNLAITNYIRRD  556

Query  561   LEDKLLAKGLSPQEANKLIKDFLNSNKELVGKVSNFNKAVAEAKNTGNYDEVKKAQKDLE  620
             LEDKL AKGLSPQEANKLIKDFLNSNKE+VGKVSNFNKAVAEAKNTGNYDEVKKAQKDLE
Sbjct  557   LEDKLWAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAVAEAKNTGNYDEVKKAQKDLE  616

Query  621   KSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKIFALINKEASKEARAAAFDPN  680
             KSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKIFALI++EASKEAR A+FDPN
Sbjct  617   KSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKIFALISQEASKEARVATFDPN  676

Query  681   LKGVRSELSDKLENINKNLKDFGKSFDELKNGKNNDFSKAEETLKALKDSVKDLGINPEW  740
             LKGVRSELSDKLENINKNLKDFGKSFDELK+GKNNDFSKAEETLKALKDSVKDLGINPEW
Sbjct  677   LKGVRSELSDKLENINKNLKDFGKSFDELKSGKNNDFSKAEETLKALKDSVKDLGINPEW  736

Query  741   ISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVIINQKITDKVDNLNQAVSETK  800
             ISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVIINQKITDKVDNLNQAVSE K
Sbjct  737   ISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVIINQKITDKVDNLNQAVSEIK  796

Query  801   LTGDFSKVEQALAELKSLSLDLGKNSDLQ-SVKNSVNGTLVGNGLSKTEATTLTKNFSDI  859
             LTGDFSKVEQALAELK+LSLDLGKNSDLQ SVKN+VNGTLV+NGLSKTEATTLTKNFSDI
Sbjct  797   LTGDFSKVEQALAELKNLSLDLGKNSDLQKSVKNGVNGTLVSNGLSKTEATTLTKNFSDI  856

Query  860   RKElneklfgnsnnnnnglknnTEPIYAQVNKKKAGQATSPEEPIYAQVAKKVSAKIDQL  919
             RKELNEKLFGNSNNNNNGLKNNTEPIYAQVNKKK+GQATSPEEPIYAQVAKKVSAKIDQL
Sbjct  857   RKELNEKLFGNSNNNNNGLKNNTEPIYAQVNKKKTGQATSPEEPIYAQVAKKVSAKIDQL  916

Query  920   NEATSAINRKIDRINKIasagkgvggfsgagrsasPEPIYATIDFDEANQAGFPLRRSAA  979
             NEATSAINRKIDRINKIASAGKGVGGFSGAGRSASPEPIYATIDFDEANQAGFPLRRSAA
Sbjct  917   NEATSAINRKIDRINKIASAGKGVGGFSGAGRSASPEPIYATIDFDEANQAGFPLRRSAA  976

Query  980   VNDLSKVGLSREQELTRRIGDLNQAVSEAKTGHFGNLEQKIDELKDSTKKNALKLWVESA  1039
             VNDLSKVGLSREQELTRRIGDL+QAVSEAKTGHFGNLEQKIDELKDSTKKNALKLWVESA
Sbjct  977   VNDLSKVGLSREQELTRRIGDLSQAVSEAKTGHFGNLEQKIDELKDSTKKNALKLWVESA  1036

Query  1040  KQVPTGLQAKLDNYATNSHTRINSNVQSGTINEKATGMLTQKNPEWLKLVNDKIVAHNVG  1099
             KQVPT+LQAKLDNYATNSHTRINSNVQSGTINEKATGMLTQKNPEWLKLVNDKIVAHNVG
Sbjct  1037  KQVPTSLQAKLDNYATNSHTRINSNVQSGTINEKATGMLTQKNPEWLKLVNDKIVAHNVG  1096

Query  1100  SAHLSEYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDIKSSFVQFLTNTFSTGSYSLMKAN  1159
             SA LS YDKIGFNQKNMKDYSDSFKFSTKLNNAVKDIKSSFVQFLTNTFSTGSYSLMKAN
Sbjct  1097  SAPLSAYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDIKSSFVQFLTNTFSTGSYSLMKAN  1156

Query  1160  VEHGVKNT-TKSGFQKS  1175
             VEHGVKNT TK+GFQKS
Sbjct  1157  VEHGVKNTNTKGGFQKS  1173

7) cag26 in NC_017382


> NC_017366_P1|24|G24|385215791|YP_005775747.1|Helicobacter_pylori_F32|+|32443..35964|cagA|HPF32_0523|cag 
pathogenicity island 
protein
Length=1173

 Score = 1662 bits (6312),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1127/1177 (96%), Positives = 1162/1177 (99%), Gaps = 4/1177 (0%)

Query  1     MTNETIDQTTTPDQTLNQTDFVPQRFIHNLQVAFIKVDNAVASFDPDQKPIVDKNDRDNR  60
             MTNETIDQTTTPDQT    +FVPQRFI+NLQVAFIKVDNAVASFDPDQKPIVDKND+DNR
Sbjct  1     MTNETIDQTTTPDQT----GFVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDKDNR  56

Query  61    QAFEKISQLREEYankaiknpakknQYFSDFINKSNDLINKDNLIAVDSSVDSFRKFGDQ  120
             QAFEKISQLREEYANKAIKNPAKKNQYFSDFINKSNDLINKDNLIAVDSSV+SFRKFGDQ
Sbjct  57    QAFEKISQLREEYANKAIKNPAKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQ  116

Query  121   RYQIFTSWVSLQKDPSKINTQQIRNFMENIIQPPISDDKEKAEFLRSAKQSFAGIIIGNQ  180
             RYQIFTSWVSLQKDPSKINTQQIRNFMEN+IQPPISDDKEKAEFLRSAKQSFAGIIIGNQ
Sbjct  117   RYQIFTSWVSLQKDPSKINTQQIRNFMENVIQPPISDDKEKAEFLRSAKQSFAGIIIGNQ  176

Query  181   IRSDEKFMGVFDESLKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPD  240
             IRSDEKFMGVFDESLKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPD
Sbjct  177   IRSDEKFMGVFDESLKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPD  236

Query  241   FEQNLATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADKDPNYKFNQLLIH  300
             FEQNLATTTTDIQGLPPEARDLLDERGNF KFTLGD+EMLDVEGVADKDPNYKFNQLLIH
Sbjct  237   FEQNLATTTTDIQGLPPEARDLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIH  296

Query  301   NNALSSVLMGGHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLNN  360
             NNALSS+LMG+HSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLNN
Sbjct  297   NNALSSMLMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLNN  356

Query  361   GSGLIIAGNEDGIKNPSFYLYKEDQLTGLKQAMSQEEIQNKVDFMEFLAQNNAKLDNLSE  420
             GSGLIIAGNEDGIKNPSFYLYKEDQLTGLKQA+SQEEIQNKVDFMEFLAQNNAKLDNLSE
Sbjct  357   GSGLIIAGNEDGIKNPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSE  416

Query  421   KEKEKFQTEIENFQKDRKAYLDALGNDRIAFVSKKDPKHLALVTEFGNGEVSYTLKDYGK  480
             KEKEKFQTEIENFQKDRKAYLDALGND+IAFVSKKDPKHLALVTEFGNGE+SYTLKDYGK
Sbjct  417   KEKEKFQTEIENFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGELSYTLKDYGK  476

Query  481   KQDKALDGETKTTLQGNLKYDGVMFVNYSNFKYTNASKSPDKGIGTTNGVSHLEANFSKV  540
             KQDKALDGETKTTLQG+LKYDGVMFVNYSNFKYTNASKSP+KG+GTTNGVSHLEANFSKV
Sbjct  477   KQDKALDGETKTTLQGSLKYDGVMFVNYSNFKYTNASKSPNKGLGTTNGVSHLEANFSKV  536

Query  541   AVFNLPNLNNLAITNYIRRDLEEKLWAKGLSLQEANKLIKDFLNSNKEMVRKVSNFNKAV  600
             AVFNLPNLNNLAITNYIRRDLE+KLWAKGLS QEANKLIKDFLNSNKEMV KVSNFNKAV
Sbjct  537   AVFNLPNLNNLAITNYIRRDLEDKLWAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAV  596

Query  601   AEAKNTGNYDGVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNKMEAKAQANSQKDKI  660
             AEAKNTGNYD VKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKN+MEAKAQANSQKDKI
Sbjct  597   AEAKNTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKI  656

Query  661   FALINKEASKEARAAAFDPNLKGIRSELSDKLENINKNLKDFGKSFDELKNGKNKDFSKA  720
             FALI++EASKEAR A+FDPNLKG+RSELSDKLENINKNLKDFGKSFDELK+GKN+DFSKA
Sbjct  657   FALISQEASKEARVATFDPNLKGVRSELSDKLENINKNLKDFGKSFDELKSGKNNDFSKA  716

Query  721   EETLKALKDSVKDLGINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVI  780
             EETLKALKDSVKDLGINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVI
Sbjct  717   EETLKALKDSVKDLGINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVI  776

Query  781   INQKITDKVDNLNQAVSETKLTGDFSKVEQALAELKSLSLDLGKNSDLQKSVKngvngtl  840
             INQKITDKVDNLNQAVSE KLTGDFSKVEQALAELK+LSLDLGKNSDLQKSVKNGVNGTL
Sbjct  777   INQKITDKVDNLNQAVSEIKLTGDFSKVEQALAELKNLSLDLGKNSDLQKSVKNGVNGTL  836

Query  841   vgnglSKTEATTLTKNFSDIRKElneklfgnsnnnnnglknnTEPIYAQVNKKKTGQAAS  900
             V+NGLSKTEATTLTKNFSDIRKELNEKLFGNSNNNNNGLKNNTEPIYAQVNKKKTGQA+S
Sbjct  837   VSNGLSKTEATTLTKNFSDIRKELNEKLFGNSNNNNNGLKNNTEPIYAQVNKKKTGQATS  896

Query  901   PEESIYAQVAKKVSAKIDQLNESASAINRKIDRINKIasagkgvggfsgagrsasPEPIY  960
             PEE+IYAQVAKKVSAKIDQLNE++SAINRKIDRINKIASAGKGVGGFSGAGRSASPEPIY
Sbjct  897   PEEPIYAQVAKKVSAKIDQLNEATSAINRKIDRINKIASAGKGVGGFSGAGRSASPEPIY  956

Query  961   ATIDFDEANQAGFPLRRYAPVDDLSKVGLSREQELTRRIGDLNQAVSEAKIGHFDNLEQK  1020
             ATIDFDEANQAGFPLRR A+V+DLSKVGLSREQELTRRIGDL+QAVSEAK GHF+NLEQK
Sbjct  957   ATIDFDEANQAGFPLRRSAAVNDLSKVGLSREQELTRRIGDLSQAVSEAKTGHFGNLEQK  1016

Query  1021  IDELKDSTKKNALKLWVESAKQVPTGLQAKLDNYATNSHTRINSNVQTGAINEKATGMLT  1080
             IDELKDSTKKNALKLWVESAKQVPT+LQAKLDNYATNSHTRINSNVQ+G+INEKATGMLT
Sbjct  1017  IDELKDSTKKNALKLWVESAKQVPTSLQAKLDNYATNSHTRINSNVQSGTINEKATGMLT  1076

Query  1081  QKNPEWLKLVNDKIVAHNVGSAHLSEYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDIKSS  1140
             QKNPEWLKLVNDKIVAHNVGSA LS YDKIGFNQKNMKDYSDSFKFSTKLNNAVKDIKSS
Sbjct  1077  QKNPEWLKLVNDKIVAHNVGSAPLSAYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDIKSS  1136

Query  1141  FVQFLTNTFSTGSYSLMKANAEHGVKNTNTKGGFQKS  1177
             FVQFLTNTFSTGSYSLMKAN EHGVKNTNTKGGFQKS
Sbjct  1137  FVQFLTNTFSTGSYSLMKANVEHGVKNTNTKGGFQKS  1173

8) cagA in NC_017367


> NC_017366_P1|24|G24|385215791|YP_005775747.1|Helicobacter_pylori_F32|+|32443..35964|cagA|HPF32_0523|cag 
pathogenicity island 
protein
Length=1173

 Score = 1661 bits (6307),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1126/1173 (96%), Positives = 1163/1173 (99%), Gaps = 3/1173 (0%)

Query  1     MTNETIDQT--PNQTDFVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDRDNRQAFE  58
             MTNETIDQT  P+QT+FVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKND+DNRQAFE
Sbjct  1     MTNETIDQTTTPDQTGFVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDKDNRQAFE  60

Query  59    RISQLREEYankaiknpakknQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQRYQI  118
             +ISQLREEYANKAIKNPAKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQRYQI
Sbjct  61    KISQLREEYANKAIKNPAKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQRYQI  120

Query  119   FTSWVSLQKDPSKINTQQIRNFMENIIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSD  178
             FTSWVSLQKDPSKINTQQIRNFMEN+IQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSD
Sbjct  121   FTSWVSLQKDPSKINTQQIRNFMENVIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSD  180

Query  179   EKFMGVFDESLKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPDFEQN  238
             EKFMGVFDESLKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPDFEQN
Sbjct  181   EKFMGVFDESLKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPDFEQN  240

Query  239   LSTTTTDIQGLPPEARDLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIHNNAL  298
             L+TTTTDIQGLPPEARDLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIHNNAL
Sbjct  241   LATTTTDIQGLPPEARDLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIHNNAL  300

Query  299   SSVLMGGHSSIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGSNVATLINAHLNNGSGL  358
             SS+LMG+HS+IEPEKVSLLYGDNGGPEARHDWNATVGYKNQQG+NVATLINAHLNNGSGL
Sbjct  301   SSMLMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLNNGSGL  360

Query  359   IIAGNENGIKNPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSEKEKE  418
             IIAGNE+GIKNPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSEKEKE
Sbjct  361   IIAGNEDGIKNPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSEKEKE  420

Query  419   KFQAEIENFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGEVSYTLKDYGKKQDK  478
             KFQ+EIENFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGE+SYTLKDYGKKQDK
Sbjct  421   KFQTEIENFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGELSYTLKDYGKKQDK  480

Query  479   ALDGETKTTLQGSLKYDGLMFVNYSNFKYTNASKSPDKGVGATNGVSHLEANFSKVAVFN  538
             ALDGETKTTLQGSLKYDG+MFVNYSNFKYTNASKSP+KG+G+TNGVSHLEANFSKVAVFN
Sbjct  481   ALDGETKTTLQGSLKYDGVMFVNYSNFKYTNASKSPNKGLGTTNGVSHLEANFSKVAVFN  540

Query  539   LPNLNNLAITNYIRRDLEDKLWAKGLSSQEANKLIKDFLNSNKELLGKVSNFNKAVAEAK  598
             LPNLNNLAITNYIRRDLEDKLWAKGLS+QEANKLIKDFLNSNKE++GKVSNFNKAVAEAK
Sbjct  541   LPNLNNLAITNYIRRDLEDKLWAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAVAEAK  600

Query  599   NTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKIFALI  658
             NTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKIFALI
Sbjct  601   NTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKIFALI  660

Query  659   NQEASKEARAAAFDPNLKGIRSELSDKLENINKNLKDFGKSFDELKSGKNKDFSKAEETL  718
             +QEASKEAR A+FDPNLKG+RSELSDKLENINKNLKDFGKSFDELKSGKN+DFSKAEETL
Sbjct  661   SQEASKEARVATFDPNLKGVRSELSDKLENINKNLKDFGKSFDELKSGKNNDFSKAEETL  720

Query  719   KALKDSVKDLGINPEWISKIENLNTALNDFKNGKNKDFSKVTQAKSDLENSIKDVIINQK  778
             KALKDSVKDLGINPEWISKIENLN+ALNDFKNGKNKDFSKVTQAKSDLENSIKDVIINQK
Sbjct  721   KALKDSVKDLGINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVIINQK  780

Query  779   ITDKVDNLNQAVSETKLTGNFSKVEQALAELKSLSLDLGKNSDLQKSVKngvngtlvgng  838
             ITDKVDNLNQAVSE KLTG+FSKVEQALAELK+LSLDLGKNSDLQKSVKNGVNGTLV+NG
Sbjct  781   ITDKVDNLNQAVSEIKLTGDFSKVEQALAELKNLSLDLGKNSDLQKSVKNGVNGTLVSNG  840

Query  839   lSKTEATTLTKNFSDIRKElneklfgnsnnnnnglknnTEPIYAQVNKKKAGQAASPEEP  898
             LSKTEATTLTKNFSDIRKELNEKLFGNSNNNNNGLKNNTEPIYAQVNKKK+GQA+SPEEP
Sbjct  841   LSKTEATTLTKNFSDIRKELNEKLFGNSNNNNNGLKNNTEPIYAQVNKKKTGQATSPEEP  900

Query  899   IYAQVAKKVSAKIDQLNEATSAINRKIDRINKIasagkgvggfsgagrsasPEPIYATID  958
             IYAQVAKKVSAKIDQLNEATSAINRKIDRINKIASAGKGVGGFSGAGRSASPEPIYATID
Sbjct  901   IYAQVAKKVSAKIDQLNEATSAINRKIDRINKIASAGKGVGGFSGAGRSASPEPIYATID  960

Query  959   FDEANQAGFPLRRYAGFDDLSKVGLSREQELTRRIGDLNQAVSEAKTGRFDNLEQKIDEL  1018
             FDEANQAGFPLRR A+ +DLSKVGLSREQELTRRIGDL+QAVSEAKTG+F+NLEQKIDEL
Sbjct  961   FDEANQAGFPLRRSAAVNDLSKVGLSREQELTRRIGDLSQAVSEAKTGHFGNLEQKIDEL  1020

Query  1019  KDSTKKNALKLWVESTKQVPTSLQAKLDNYATNSHTRINSNVQSGTINEKATGMLTQKNP  1078
             KDSTKKNALKLWVES+KQVPTSLQAKLDNYATNSHTRINSNVQSGTINEKATGMLTQKNP
Sbjct  1021  KDSTKKNALKLWVESAKQVPTSLQAKLDNYATNSHTRINSNVQSGTINEKATGMLTQKNP  1080

Query  1079  EWLKLVNDKIVAHNVGSAHLSEYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDIKSSFVQF  1138
             EWLKLVNDKIVAHNVGSA LS YDKIGFNQKNMKDYSDSFKFSTKLNNAVKDIKSSFVQF
Sbjct  1081  EWLKLVNDKIVAHNVGSAPLSAYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDIKSSFVQF  1140

Query  1139  LTNTFSTGSYSLMKANAEHGVKNT-TKSGFQKS  1170
             LTNTFSTGSYSLMKAN EHGVKNT TK+GFQKS
Sbjct  1141  LTNTFSTGSYSLMKANVEHGVKNTNTKGGFQKS  1173

9) HPKB_0795 in NC_017354


> NC_017366_P1|24|G24|385215791|YP_005775747.1|Helicobacter_pylori_F32|+|32443..35964|cagA|HPF32_0523|cag 
pathogenicity island 
protein
Length=1173

 Score = 1653 bits (6275),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1113/1208 (93%), Positives = 1155/1208 (96%), Gaps = 35/1208 (2%)

Query  1     MTNEIIDQTTTPNQTDFVPQRFINNLQVAFLKVDNAVASFDPDQKPIVDKNDRDNRQAFE  60
             MTNE IDQTTTP+QT+FVPQRFINNLQVAF+KVDNAVASFDPDQKPIVDKND+DNRQAFE
Sbjct  1     MTNETIDQTTTPDQTGFVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDKDNRQAFE  60

Query  61    KISQLKEEYANKAIKNPTKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQRYQI  120
             KISQL+EEYANKAIKNP+KKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQRYQI
Sbjct  61    KISQLREEYANKAIKNPAKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQRYQI  120

Query  121   FMNWVSHQKDPSKINTQQIRNFMENIIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSD  180
             F +WVS QKDPSKINTQQIRNFMEN+IQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSD
Sbjct  121   FTSWVSLQKDPSKINTQQIRNFMENVIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSD  180

Query  181   QKFMGVFDESLKERQEAEKNGEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPDFEQN  240
             +KFMGVFDESLK RQEAEKN+EPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPDFEQN
Sbjct  181   EKFMGVFDESLKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPDFEQN  240

Query  241   LATTTTNIQGLPPESRDLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIHNNAL  300
             LATTTT+IQGLPPE+RDLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIHNNAL
Sbjct  241   LATTTTDIQGLPPEARDLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIHNNAL  300

Query  301   SSVLMGGHSNIEPEKVSLLYGGNGGPEARHDWNATVGYKNQQGNNVATLINAHLNNGSGL  360
             SS+LMG+HSNIEPEKVSLLYG+NGGPEARHDWNATVGYKNQQGNNVATLINAHLNNGSGL
Sbjct  301   SSMLMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLNNGSGL  360

Query  361   IIAGNENGIKNPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLVQNNAKLDNLSEKEKE  420
             IIAGNE+GIKNPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFL QNNAKLDNLSEKEKE
Sbjct  361   IIAGNEDGIKNPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSEKEKE  420

Query  421   KFQTEIENFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGEVSYTLKDYGKKQDK  480
             KFQTEIENFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGE+SYTLKDYGKKQDK
Sbjct  421   KFQTEIENFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGELSYTLKDYGKKQDK  480

Query  481   ALDGETKTTLQGNLKHDGVMFVNYSNFKYTNASKSPDKGVGATNGVSRLEANLSKVAVFN  540
             ALDGETKTTLQG+LK DGVMFVNYSNFKYTNASKSP+KG+G+TNGVS+LEAN+SKVAVFN
Sbjct  481   ALDGETKTTLQGSLKYDGVMFVNYSNFKYTNASKSPNKGLGTTNGVSHLEANFSKVAVFN  540

Query  541   LPNLNNLAITNYIRRDLEDKLWAKGLSPQEANKLIKDFLNSNKELLGKVSNFNKAVAEAK  600
             LPNLNNLAITNYIRRDLEDKLWAKGLSPQEANKLIKDFLNSNKE++GKVSNFNKAVAEAK
Sbjct  541   LPNLNNLAITNYIRRDLEDKLWAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAVAEAK  600

Query  601   NTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKIFALI  660
             NTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKIFALI
Sbjct  601   NTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKIFALI  660

Query  661   NQEASKEARAVAFDPNLKGVRSELSDKLENINKNLKDFGKSFDELKSGKNNDFNKAEETL  720
             +QEASKEAR  +FDPNLKGVRSELSDKLENINKNLKDFGKSFDELKSGKNNDF+KAEETL
Sbjct  661   SQEASKEARVATFDPNLKGVRSELSDKLENINKNLKDFGKSFDELKSGKNNDFSKAEETL  720

Query  721   KALKDSVKDLGINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDFENSIKDVIINQK  780
             KALKDSVKDLGINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSD+ENSIKDVIINQK
Sbjct  721   KALKDSVKDLGINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVIINQK  780

Query  781   ITDKVDNLNQAVSETKLTGDFSKVEQALAELKNLSLDLGKNSDLQKSVKngvngtlvgng  840
             ITDKVDNLNQAVSE KLTGDFSKVEQALAELKNLSLDLGKNSDLQKSVKNGVNGTLV+NG
Sbjct  781   ITDKVDNLNQAVSEIKLTGDFSKVEQALAELKNLSLDLGKNSDLQKSVKNGVNGTLVSNG  840

Query  841   lSKTEATTLAKNFSDIRKELneklfgnsnnnnnglknsTEPIYAKVAKKVSVKIDQLNEA  900
             LSKTEATTL+KNFSDIRKELNEKLFGNSNNNNNGLKN+TEPIYA+V KK +       +A
Sbjct  841   LSKTEATTLTKNFSDIRKELNEKLFGNSNNNNNGLKNNTEPIYAQVNKKKT------GQA  894

Query  901   TSAINRKIDRINKIasagkgvggfsgagrsasPEPIYAQVAKKVSAKIDQLNEATSAINR  960
             TS+                              EPIYAQVAKKVSAKIDQLNEATSAINR
Sbjct  895   TSP-----------------------------EEPIYAQVAKKVSAKIDQLNEATSAINR  925

Query  961   KIDRINKIasagkgvggfsgagrsasPEPIYATIDFDEANQAGFPLMRSAAVNDLSKVGL  1020
             KIDRINKIASAGKGVGGFSGAGRSASPEPIYATIDFDEANQAGFPL RSAAVNDLSKVGL
Sbjct  926   KIDRINKIASAGKGVGGFSGAGRSASPEPIYATIDFDEANQAGFPLRRSAAVNDLSKVGL  985

Query  1021  SREQELTRRIGDLNQAVSEAKTGHFGNLEQKIDELKDSTKKNALKLWVESAKQVPTGLQA  1080
             SREQELTRRIGDL+QAVSEAKTGHFGNLEQKIDELKDSTKKNALKLWVESAKQVPT+LQA
Sbjct  986   SREQELTRRIGDLSQAVSEAKTGHFGNLEQKIDELKDSTKKNALKLWVESAKQVPTSLQA  1045

Query  1081  KLDNYATNSHTRINSNVQSGAINEKATGMLMQKNPEWLKLVNDKIVAHNVGSTPLSEYDK  1140
             KLDNYATNSHTRINSNVQSG+INEKATGML QKNPEWLKLVNDKIVAHNVGS+PLS YDK
Sbjct  1046  KLDNYATNSHTRINSNVQSGTINEKATGMLTQKNPEWLKLVNDKIVAHNVGSAPLSAYDK  1105

Query  1141  IGFNQKNMKDYSDSFKFSTKLNNAVKDVKSDFVQFLTNAFSTGSYSLMKANAEHGVKNTN  1200
             IGFNQKNMKDYSDSFKFSTKLNNAVKD+KS FVQFLTN+FSTGSYSLMKAN EHGVKNTN
Sbjct  1106  IGFNQKNMKDYSDSFKFSTKLNNAVKDIKSSFVQFLTNTFSTGSYSLMKANVEHGVKNTN  1165

Query  1201  TKGGFQKS  1208
             TKGGFQKS
Sbjct  1166  TKGGFQKS  1173

10) cagA in NC_017360


> NC_017366_P1|24|G24|385215791|YP_005775747.1|Helicobacter_pylori_F32|+|32443..35964|cagA|HPF32_0523|cag 
pathogenicity island 
protein
Length=1173

 Score = 1643 bits (6237),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1122/1177 (96%), Positives = 1158/1177 (99%), Gaps = 5/1177 (0%)

Query  1     MTNETIVQTTTPDQTLNQTDFVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDRDNR  60
             MTNETI QTTTPDQT    +FVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKND+DNR
Sbjct  1     MTNETIDQTTTPDQT----GFVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDKDNR  56

Query  61    QAFEKISQLREEYANKAIKNPTKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQ  120
             QAFEKISQLREEYANKAIKNP+KKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQ
Sbjct  57    QAFEKISQLREEYANKAIKNPAKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQ  116

Query  121   RYQIFTSWVSLQKDPSKINTQQIRNFMENIIQPPISDDKEKAEFLRSAKQSFAGIIIGNQ  180
             RYQIFTSWVSLQKDPSKINTQQIRNFMEN+IQPPISDDKEKAEFLRSAKQSFAGIIIGNQ
Sbjct  117   RYQIFTSWVSLQKDPSKINTQQIRNFMENVIQPPISDDKEKAEFLRSAKQSFAGIIIGNQ  176

Query  181   IRSDEKFMGVFDESLKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPMPN  240
             IRSDEKFMGVFDESLKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEP P+
Sbjct  177   IRSDEKFMGVFDESLKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPD  236

Query  241   VEQNLATTTTDIQGLPPEARDLLDERGNFSKFTLGDVEMLDVEGVADKDPNYKFNQLLIH  300
              EQNLATTTTDIQGLPPEARDLLDERGNF KFTLGDVEMLDVEGVADKDPNYKFNQLLIH
Sbjct  237   FEQNLATTTTDIQGLPPEARDLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIH  296

Query  301   NNALSSVLMGSHSSIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLNN  360
             NNALSS+LMGSHS+IEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLNN
Sbjct  297   NNALSSMLMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLNN  356

Query  361   GSGLVIAGNENGIKNPSFYLYKEDQLTGLKQAMSQEEIQNKVDFMEFLVQnnaklnnlse  420
             GSGL+IAGNE+GIKNPSFYLYKEDQLTGLKQA+SQEEIQNKVDFMEFL QNNAKL+NLSE
Sbjct  357   GSGLIIAGNEDGIKNPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSE  416

Query  421   kekekFQTEIENFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGEVSYTLKDYGK  480
             KEKEKFQTEIENFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGE+SYTLKDYGK
Sbjct  417   KEKEKFQTEIENFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGELSYTLKDYGK  476

Query  481   KQDKALDGETKTTLQGSLKYDGVMFVDYSNFKYTNASKSPDKGVGATNGVSHLEANFSKV  540
             KQDKALDGETKTTLQGSLKYDGVMFV+YSNFKYTNASKSP+KG+G+TNGVSHLEANFSKV
Sbjct  477   KQDKALDGETKTTLQGSLKYDGVMFVNYSNFKYTNASKSPNKGLGTTNGVSHLEANFSKV  536

Query  541   AVFNLPNLNNLAITNHIRRDLEDKLLAKGLSPQEANKLIKDFLNGNKEMVGKVLNFNKAV  600
             AVFNLPNLNNLAITN IRRDLEDKL AKGLSPQEANKLIKDFLN+NKEMVGKV NFNKAV
Sbjct  537   AVFNLPNLNNLAITNYIRRDLEDKLWAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAV  596

Query  601   AEAKNTGNYGEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKI  660
             AEAKNTGNY+EVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKI
Sbjct  597   AEAKNTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKI  656

Query  661   FALINKEASKEARAAAFDPNLKGIRSELSDKLENINKNLKDFGKSFDELKNGKNNDFSKA  720
             FALI++EASKEAR A+FDPNLKG+RSELSDKLENINKNLKDFGKSFDELK+GKNNDFSKA
Sbjct  657   FALISQEASKEARVATFDPNLKGVRSELSDKLENINKNLKDFGKSFDELKSGKNNDFSKA  716

Query  721   EETLKALKDSVKDLGINPEWISKIENLNAALNDFKNGKNNDFSKVTQAKSDLENSIKDVI  780
             EETLKALKDSVKDLGINPEWISKIENLNAALNDFKNGKN+DFSKVTQAKSDLENSIKDVI
Sbjct  717   EETLKALKDSVKDLGINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVI  776

Query  781   INQKITDKVDNLNQAVSETKLTGDFSKVEQALAELKSLSFDLGKNSDLQKSVKngvngtl  840
             INQKITDKVDNLNQAVSE KLTGDFSKVEQALAELK+LS+DLGKNSDLQKSVKNGVNGTL
Sbjct  777   INQKITDKVDNLNQAVSEIKLTGDFSKVEQALAELKNLSLDLGKNSDLQKSVKNGVNGTL  836

Query  841   vgnglSKTEATTLTKNFSDIRKELneklfgnsnnnnnglknsTEPIYAKVNKKKTGQAAS  900
             V+NGLSKTEATTLTKNFSDIRKELNEKLFGNSNNNNNGLKN+TEPIYA+VNKKKTGQA+S
Sbjct  837   VSNGLSKTEATTLTKNFSDIRKELNEKLFGNSNNNNNGLKNNTEPIYAQVNKKKTGQATS  896

Query  901   PEEPIYAQVAKKVSAKIDQLNEATLAINRKIDRINKIasagkgvggfsgagrsasPEPIY  960
             PEEPIYAQVAKKVSAKIDQLNEAT AINRKIDRINKIASAGKGVGGFSGAGRSASPEPIY
Sbjct  897   PEEPIYAQVAKKVSAKIDQLNEATSAINRKIDRINKIASAGKGVGGFSGAGRSASPEPIY  956

Query  961   ATIDFDETNQAGFPLRRSAAVNDLSKVGLSREQELTRRIGDLNQAVSEAKTGHFDNLEQK  1020
             ATIDFDE+NQAGFPLRRSAAVNDLSKVGLSREQELTRRIGDL+QAVSEAKTGHF+NLEQK
Sbjct  957   ATIDFDEANQAGFPLRRSAAVNDLSKVGLSREQELTRRIGDLSQAVSEAKTGHFGNLEQK  1016

Query  1021  IDELKDSTKKNALKLWVESAKQVPTGLSAKLDNYATNSHTRINSNVQSGTINEKATGVLT  1080
             IDELKDSTKKNALKLWVESAKQVPT+L AKLDNYATNSHTRINSNVQSGTINEKATG+LT
Sbjct  1017  IDELKDSTKKNALKLWVESAKQVPTSLQAKLDNYATNSHTRINSNVQSGTINEKATGMLT  1076

Query  1081  QKNPEWLKLVNDKIVAHNVGSAHLSEYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDIKSS  1140
             QKNPEWLKLVNDKIVAHNVGSA LS YDKIGFNQKNMKDYSDSFKFSTKLNNAVKDIKSS
Sbjct  1077  QKNPEWLKLVNDKIVAHNVGSAPLSAYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDIKSS  1136

Query  1141  FVQFLTNTFSTGSYSLMKANVEHGVKNT-TKSGFQKS  1176
             FVQFLTNTFSTGSYSLMKANVEHGVKNT TK+GFQKS
Sbjct  1137  FVQFLTNTFSTGSYSLMKANVEHGVKNTNTKGGFQKS  1173

11) K747_06810 in NC_021215


> NC_017366_P1|24|G24|385215791|YP_005775747.1|Helicobacter_pylori_F32|+|32443..35964|cagA|HPF32_0523|cag 
pathogenicity island 
protein
Length=1173

 Score = 1593 bits (6050),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1098/1157 (95%), Positives = 1140/1157 (99%), Gaps = 1/1157 (0%)

Query  21    FVPQRFINNLQVAFIKVDSAVASFDPDQKPIVDKNDRDNRQAFEKISQLREEYankaikn  80
             FVPQRFINNLQVAFIKVD+AVASFDPDQKPIVDKND+DNRQAFEKISQLREEYANKAIKN
Sbjct  17    FVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDKDNRQAFEKISQLREEYANKAIKN  76

Query  81    pakknQYFSDFINKSNDLINKDNLIDVDSSVESFKKFGDQRYQIFTSWVSLQKDPSEINT  140
             PAKKNQYFSDFINKSNDLINKDNLI VDSSVESF+KFGDQRYQIFTSWVSLQKDPS INT
Sbjct  77    PAKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQRYQIFTSWVSLQKDPSKINT  136

Query  141   QQIRNFMENIIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSDQKFMGVFDESLKERQE  200
             QQIRNFMEN+IQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSD+KFMGVFDESLK RQE
Sbjct  137   QQIRNFMENVIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSDEKFMGVFDESLKARQE  196

Query  201   AEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLHQEPRPDFEQNLATTTTDIQGLPPEAR  260
             AEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETL+QEPRPDFEQNLATTTTDIQGLPPEAR
Sbjct  197   AEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPDFEQNLATTTTDIQGLPPEAR  256

Query  261   DLLDERGNFSKFTLGDMEMLDVEGVADKNPNYKFNQLLIHNNALSSVLMGGHSNIEPEKV  320
             DLLDERGNF KFTLGD+EMLDVEGVADK+PNYKFNQLLIHNNALSS+LMG+HSNIEPEKV
Sbjct  257   DLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIHNNALSSMLMGSHSNIEPEKV  316

Query  321   SLLYGDNGGPEARHDWNATVGYKNQQGSNVATLINAHLNNGSGLIIAGNENGIKNPSFYL  380
             SLLYGDNGGPEARHDWNATVGYKNQQG+NVATLINAHLNNGSGLIIAGNE+GIKNPSFYL
Sbjct  317   SLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLNNGSGLIIAGNEDGIKNPSFYL  376

Query  381   YKEDQLTGLKQAMSQEEIQNKVDFMEFLAKNNAKLDNLSEKEKEKFQTEIGNFQKDRKAY  440
             YKEDQLTGLKQA+SQEEIQNKVDFMEFLA+NNAKLDNLSEKEKEKFQTEI NFQKDRKAY
Sbjct  377   YKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSEKEKEKFQTEIENFQKDRKAY  436

Query  441   LDALGNDHIAFVSKKDPKHLALVTEFGNGEVSYTLKDYGKKQDKALDGEVKTTLQGSLKY  500
             LDALGNDHIAFVSKKDPKHLALVTEFGNGE+SYTLKDYGKKQDKALDGE KTTLQGSLKY
Sbjct  437   LDALGNDHIAFVSKKDPKHLALVTEFGNGELSYTLKDYGKKQDKALDGETKTTLQGSLKY  496

Query  501   DGVMFVDYSNFKYTNASKSPDKGVGATNGVSHLEANFSKVAVFNLPNLNNLAITNHIRRD  560
             DGVMFV+YSNFKYTNASKSP+KG+G+TNGVSHLEANFSKVAVFNLPNLNNLAITN IRRD
Sbjct  497   DGVMFVNYSNFKYTNASKSPNKGLGTTNGVSHLEANFSKVAVFNLPNLNNLAITNYIRRD  556

Query  561   LEDKLLAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAVAEAKNTGNYDEVKKAQKDLE  620
             LEDKL AKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAVAEAKNTGNYDEVKKAQKDLE
Sbjct  557   LEDKLWAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAVAEAKNTGNYDEVKKAQKDLE  616

Query  621   KSIrkrehlekevvkkleSRNDNKNRMEAKAQANSQKDKIFALINKEASKEARAAAFDPN  680
             KS+RKREHLEKEV KKLESRNDNKNRMEAKAQANSQKDKIFALI++EASKEAR A+FDPN
Sbjct  617   KSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKIFALISQEASKEARVATFDPN  676

Query  681   LKGIRSELSDKLENINKNLKDFGKSFDDFKNGKNNDFSKAEETLKALKDLVKDLGINPEW  740
             LKG+RSELSDKLENINKNLKDFGKSFD++K+GKNNDFSKAEETLKALKD VKDLGINPEW
Sbjct  677   LKGVRSELSDKLENINKNLKDFGKSFDELKSGKNNDFSKAEETLKALKDSVKDLGINPEW  736

Query  741   ISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVIINQKITDKVDNLNQAVSETK  800
             ISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVIINQKITDKVDNLNQAVSE K
Sbjct  737   ISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVIINQKITDKVDNLNQAVSEIK  796

Query  801   LTGDFSKVEQALAELKNLSLDLGKNSDLQKSVKngvngtlvgnglSKTEATTLTKNFSDI  860
             LTGDFSKVEQALAELKNLSLDLGKNSDLQKSVKNGVNGTLV+NGLSKTEATTLTKNFSDI
Sbjct  797   LTGDFSKVEQALAELKNLSLDLGKNSDLQKSVKNGVNGTLVSNGLSKTEATTLTKNFSDI  856

Query  861   RKElneklfgnsnnnnnglknnTEPIYAQVNKKKTGQVASPEESIYAQVAKKVSAKIDQL  920
             RKELNEKLFGNSNNNNNGLKNNTEPIYAQVNKKKTGQ +SPEE+IYAQVAKKVSAKIDQL
Sbjct  857   RKELNEKLFGNSNNNNNGLKNNTEPIYAQVNKKKTGQATSPEEPIYAQVAKKVSAKIDQL  916

Query  921   NEATSAINRKIDRINKIasagkgvggfsgagrsasPEPIYATIDFDEANQAGFPLRRSAA  980
             NEATSAINRKIDRINKIASAGKGVGGFSGAGRSASPEPIYATIDFDEANQAGFPLRRSAA
Sbjct  917   NEATSAINRKIDRINKIASAGKGVGGFSGAGRSASPEPIYATIDFDEANQAGFPLRRSAA  976

Query  981   VNDLSKVGLSREQELTRRIGDLNQAVSEAKTGHFDNLEQKIDELKDSTKKNALKLFIESA  1040
             VNDLSKVGLSREQELTRRIGDL+QAVSEAKTGHF+NLEQKIDELKDSTKKNALKL +ESA
Sbjct  977   VNDLSKVGLSREQELTRRIGDLSQAVSEAKTGHFGNLEQKIDELKDSTKKNALKLWVESA  1036

Query  1041  KQVPTGLQAKLDNYAANSHTRINSNVRNGAINERATGMLTQKNPEWLKLVNNKIVAHNVG  1100
             KQVPT+LQAKLDNYA+NSHTRINSNV++G+INE+ATGMLTQKNPEWLKLVN+KIVAHNVG
Sbjct  1037  KQVPTSLQAKLDNYATNSHTRINSNVQSGTINEKATGMLTQKNPEWLKLVNDKIVAHNVG  1096

Query  1101  SAHLSEYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDIKSNFVQFLTNTFSTGSYSLMKAN  1160
             SA LS YDKIGFNQKNMKDYSDSFKFSTKLNNAVKDIKS+FVQFLTNTFSTGSYSLMKAN
Sbjct  1097  SAPLSAYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDIKSSFVQFLTNTFSTGSYSLMKAN  1156

Query  1161  VEHGVKNT-TKSGFQKS  1176
             VEHGVKNT TK+GFQKS
Sbjct  1157  VEHGVKNTNTKGGFQKS  1173

12) K748_08050 in NC_021882


> NC_017366_P1|24|G24|385215791|YP_005775747.1|Helicobacter_pylori_F32|+|32443..35964|cagA|HPF32_0523|cag 
pathogenicity island 
protein
Length=1173

 Score = 1593 bits (6050),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1098/1157 (95%), Positives = 1140/1157 (99%), Gaps = 1/1157 (0%)

Query  21    FVPQRFINNLQVAFIKVDSAVASFDPDQKPIVDKNDRDNRQAFEKISQLREEYankaikn  80
             FVPQRFINNLQVAFIKVD+AVASFDPDQKPIVDKND+DNRQAFEKISQLREEYANKAIKN
Sbjct  17    FVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDKDNRQAFEKISQLREEYANKAIKN  76

Query  81    pakknQYFSDFINKSNDLINKDNLIDVDSSVESFKKFGDQRYQIFTSWVSLQKDPSEINT  140
             PAKKNQYFSDFINKSNDLINKDNLI VDSSVESF+KFGDQRYQIFTSWVSLQKDPS INT
Sbjct  77    PAKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQRYQIFTSWVSLQKDPSKINT  136

Query  141   QQIRNFMENIIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSDQKFMGVFDESLKERQE  200
             QQIRNFMEN+IQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSD+KFMGVFDESLK RQE
Sbjct  137   QQIRNFMENVIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSDEKFMGVFDESLKARQE  196

Query  201   AEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLHQEPRPDFEQNLATTTTDIQGLPPEAR  260
             AEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETL+QEPRPDFEQNLATTTTDIQGLPPEAR
Sbjct  197   AEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPDFEQNLATTTTDIQGLPPEAR  256

Query  261   DLLDERGNFSKFTLGDMEMLDVEGVADKNPNYKFNQLLIHNNALSSVLMGGHSNIEPEKV  320
             DLLDERGNF KFTLGD+EMLDVEGVADK+PNYKFNQLLIHNNALSS+LMG+HSNIEPEKV
Sbjct  257   DLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIHNNALSSMLMGSHSNIEPEKV  316

Query  321   SLLYGDNGGPEARHDWNATVGYKNQQGSNVATLINAHLNNGSGLIIAGNENGIKNPSFYL  380
             SLLYGDNGGPEARHDWNATVGYKNQQG+NVATLINAHLNNGSGLIIAGNE+GIKNPSFYL
Sbjct  317   SLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLNNGSGLIIAGNEDGIKNPSFYL  376

Query  381   YKEDQLTGLKQAMSQEEIQNKVDFMEFLAKNNAKLDNLSEKEKEKFQTEIGNFQKDRKAY  440
             YKEDQLTGLKQA+SQEEIQNKVDFMEFLA+NNAKLDNLSEKEKEKFQTEI NFQKDRKAY
Sbjct  377   YKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSEKEKEKFQTEIENFQKDRKAY  436

Query  441   LDALGNDHIAFVSKKDPKHLALVTEFGNGEVSYTLKDYGKKQDKALDGEVKTTLQGSLKY  500
             LDALGNDHIAFVSKKDPKHLALVTEFGNGE+SYTLKDYGKKQDKALDGE KTTLQGSLKY
Sbjct  437   LDALGNDHIAFVSKKDPKHLALVTEFGNGELSYTLKDYGKKQDKALDGETKTTLQGSLKY  496

Query  501   DGVMFVDYSNFKYTNASKSPDKGVGATNGVSHLEANFSKVAVFNLPNLNNLAITNHIRRD  560
             DGVMFV+YSNFKYTNASKSP+KG+G+TNGVSHLEANFSKVAVFNLPNLNNLAITN IRRD
Sbjct  497   DGVMFVNYSNFKYTNASKSPNKGLGTTNGVSHLEANFSKVAVFNLPNLNNLAITNYIRRD  556

Query  561   LEDKLLAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAVAEAKNTGNYDEVKKAQKDLE  620
             LEDKL AKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAVAEAKNTGNYDEVKKAQKDLE
Sbjct  557   LEDKLWAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAVAEAKNTGNYDEVKKAQKDLE  616

Query  621   KSIrkrehlekevvkkleSRNDNKNRMEAKAQANSQKDKIFALINKEASKEARAAAFDPN  680
             KS+RKREHLEKEV KKLESRNDNKNRMEAKAQANSQKDKIFALI++EASKEAR A+FDPN
Sbjct  617   KSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKIFALISQEASKEARVATFDPN  676

Query  681   LKGIRSELSDKLENINKNLKDFGKSFDDFKNGKNNDFSKAEETLKALKDLVKDLGINPEW  740
             LKG+RSELSDKLENINKNLKDFGKSFD++K+GKNNDFSKAEETLKALKD VKDLGINPEW
Sbjct  677   LKGVRSELSDKLENINKNLKDFGKSFDELKSGKNNDFSKAEETLKALKDSVKDLGINPEW  736

Query  741   ISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVIINQKITDKVDNLNQAVSETK  800
             ISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVIINQKITDKVDNLNQAVSE K
Sbjct  737   ISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVIINQKITDKVDNLNQAVSEIK  796

Query  801   LTGDFSKVEQALAELKNLSLDLGKNSDLQKSVKngvngtlvgnglSKTEATTLTKNFSDI  860
             LTGDFSKVEQALAELKNLSLDLGKNSDLQKSVKNGVNGTLV+NGLSKTEATTLTKNFSDI
Sbjct  797   LTGDFSKVEQALAELKNLSLDLGKNSDLQKSVKNGVNGTLVSNGLSKTEATTLTKNFSDI  856

Query  861   RKElneklfgnsnnnnnglknnTEPIYAQVNKKKTGQVASPEESIYAQVAKKVSAKIDQL  920
             RKELNEKLFGNSNNNNNGLKNNTEPIYAQVNKKKTGQ +SPEE+IYAQVAKKVSAKIDQL
Sbjct  857   RKELNEKLFGNSNNNNNGLKNNTEPIYAQVNKKKTGQATSPEEPIYAQVAKKVSAKIDQL  916

Query  921   NEATSAINRKIDRINKIasagkgvggfsgagrsasPEPIYATIDFDEANQAGFPLRRSAA  980
             NEATSAINRKIDRINKIASAGKGVGGFSGAGRSASPEPIYATIDFDEANQAGFPLRRSAA
Sbjct  917   NEATSAINRKIDRINKIASAGKGVGGFSGAGRSASPEPIYATIDFDEANQAGFPLRRSAA  976

Query  981   VNDLSKVGLSREQELTRRIGDLNQAVSEAKTGHFDNLEQKIDELKDSTKKNALKLFIESA  1040
             VNDLSKVGLSREQELTRRIGDL+QAVSEAKTGHF+NLEQKIDELKDSTKKNALKL +ESA
Sbjct  977   VNDLSKVGLSREQELTRRIGDLSQAVSEAKTGHFGNLEQKIDELKDSTKKNALKLWVESA  1036

Query  1041  KQVPTGLQAKLDNYAANSHTRINSNVRNGAINERATGMLTQKNPEWLKLVNNKIVAHNVG  1100
             KQVPT+LQAKLDNYA+NSHTRINSNV++G+INE+ATGMLTQKNPEWLKLVN+KIVAHNVG
Sbjct  1037  KQVPTSLQAKLDNYATNSHTRINSNVQSGTINEKATGMLTQKNPEWLKLVNDKIVAHNVG  1096

Query  1101  SAHLSEYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDIKSNFVQFLTNTFSTGSYSLMKAN  1160
             SA LS YDKIGFNQKNMKDYSDSFKFSTKLNNAVKDIKS+FVQFLTNTFSTGSYSLMKAN
Sbjct  1097  SAPLSAYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDIKSSFVQFLTNTFSTGSYSLMKAN  1156

Query  1161  VEHGVKNT-TKSGFQKS  1176
             VEHGVKNT TK+GFQKS
Sbjct  1157  VEHGVKNTNTKGGFQKS  1173

13) K749_01445 in NC_021216


> NC_017366_P1|24|G24|385215791|YP_005775747.1|Helicobacter_pylori_F32|+|32443..35964|cagA|HPF32_0523|cag 
pathogenicity island 
protein
Length=1173

 Score = 1593 bits (6050),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1098/1157 (95%), Positives = 1140/1157 (99%), Gaps = 1/1157 (0%)

Query  21    FVPQRFINNLQVAFIKVDSAVASFDPDQKPIVDKNDRDNRQAFEKISQLREEYankaikn  80
             FVPQRFINNLQVAFIKVD+AVASFDPDQKPIVDKND+DNRQAFEKISQLREEYANKAIKN
Sbjct  17    FVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDKDNRQAFEKISQLREEYANKAIKN  76

Query  81    pakknQYFSDFINKSNDLINKDNLIDVDSSVESFKKFGDQRYQIFTSWVSLQKDPSEINT  140
             PAKKNQYFSDFINKSNDLINKDNLI VDSSVESF+KFGDQRYQIFTSWVSLQKDPS INT
Sbjct  77    PAKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQRYQIFTSWVSLQKDPSKINT  136

Query  141   QQIRNFMENIIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSDQKFMGVFDESLKERQE  200
             QQIRNFMEN+IQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSD+KFMGVFDESLK RQE
Sbjct  137   QQIRNFMENVIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSDEKFMGVFDESLKARQE  196

Query  201   AEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLHQEPRPDFEQNLATTTTDIQGLPPEAR  260
             AEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETL+QEPRPDFEQNLATTTTDIQGLPPEAR
Sbjct  197   AEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPDFEQNLATTTTDIQGLPPEAR  256

Query  261   DLLDERGNFSKFTLGDMEMLDVEGVADKNPNYKFNQLLIHNNALSSVLMGGHSNIEPEKV  320
             DLLDERGNF KFTLGD+EMLDVEGVADK+PNYKFNQLLIHNNALSS+LMG+HSNIEPEKV
Sbjct  257   DLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIHNNALSSMLMGSHSNIEPEKV  316

Query  321   SLLYGDNGGPEARHDWNATVGYKNQQGSNVATLINAHLNNGSGLIIAGNENGIKNPSFYL  380
             SLLYGDNGGPEARHDWNATVGYKNQQG+NVATLINAHLNNGSGLIIAGNE+GIKNPSFYL
Sbjct  317   SLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLNNGSGLIIAGNEDGIKNPSFYL  376

Query  381   YKEDQLTGLKQAMSQEEIQNKVDFMEFLAKNNAKLDNLSEKEKEKFQTEIGNFQKDRKAY  440
             YKEDQLTGLKQA+SQEEIQNKVDFMEFLA+NNAKLDNLSEKEKEKFQTEI NFQKDRKAY
Sbjct  377   YKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSEKEKEKFQTEIENFQKDRKAY  436

Query  441   LDALGNDHIAFVSKKDPKHLALVTEFGNGEVSYTLKDYGKKQDKALDGEVKTTLQGSLKY  500
             LDALGNDHIAFVSKKDPKHLALVTEFGNGE+SYTLKDYGKKQDKALDGE KTTLQGSLKY
Sbjct  437   LDALGNDHIAFVSKKDPKHLALVTEFGNGELSYTLKDYGKKQDKALDGETKTTLQGSLKY  496

Query  501   DGVMFVDYSNFKYTNASKSPDKGVGATNGVSHLEANFSKVAVFNLPNLNNLAITNHIRRD  560
             DGVMFV+YSNFKYTNASKSP+KG+G+TNGVSHLEANFSKVAVFNLPNLNNLAITN IRRD
Sbjct  497   DGVMFVNYSNFKYTNASKSPNKGLGTTNGVSHLEANFSKVAVFNLPNLNNLAITNYIRRD  556

Query  561   LEDKLLAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAVAEAKNTGNYDEVKKAQKDLE  620
             LEDKL AKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAVAEAKNTGNYDEVKKAQKDLE
Sbjct  557   LEDKLWAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAVAEAKNTGNYDEVKKAQKDLE  616

Query  621   KSIrkrehlekevvkkleSRNDNKNRMEAKAQANSQKDKIFALINKEASKEARAAAFDPN  680
             KS+RKREHLEKEV KKLESRNDNKNRMEAKAQANSQKDKIFALI++EASKEAR A+FDPN
Sbjct  617   KSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKIFALISQEASKEARVATFDPN  676

Query  681   LKGIRSELSDKLENINKNLKDFGKSFDDFKNGKNNDFSKAEETLKALKDLVKDLGINPEW  740
             LKG+RSELSDKLENINKNLKDFGKSFD++K+GKNNDFSKAEETLKALKD VKDLGINPEW
Sbjct  677   LKGVRSELSDKLENINKNLKDFGKSFDELKSGKNNDFSKAEETLKALKDSVKDLGINPEW  736

Query  741   ISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVIINQKITDKVDNLNQAVSETK  800
             ISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVIINQKITDKVDNLNQAVSE K
Sbjct  737   ISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVIINQKITDKVDNLNQAVSEIK  796

Query  801   LTGDFSKVEQALAELKNLSLDLGKNSDLQKSVKngvngtlvgnglSKTEATTLTKNFSDI  860
             LTGDFSKVEQALAELKNLSLDLGKNSDLQKSVKNGVNGTLV+NGLSKTEATTLTKNFSDI
Sbjct  797   LTGDFSKVEQALAELKNLSLDLGKNSDLQKSVKNGVNGTLVSNGLSKTEATTLTKNFSDI  856

Query  861   RKElneklfgnsnnnnnglknnTEPIYAQVNKKKTGQVASPEESIYAQVAKKVSAKIDQL  920
             RKELNEKLFGNSNNNNNGLKNNTEPIYAQVNKKKTGQ +SPEE+IYAQVAKKVSAKIDQL
Sbjct  857   RKELNEKLFGNSNNNNNGLKNNTEPIYAQVNKKKTGQATSPEEPIYAQVAKKVSAKIDQL  916

Query  921   NEATSAINRKIDRINKIasagkgvggfsgagrsasPEPIYATIDFDEANQAGFPLRRSAA  980
             NEATSAINRKIDRINKIASAGKGVGGFSGAGRSASPEPIYATIDFDEANQAGFPLRRSAA
Sbjct  917   NEATSAINRKIDRINKIASAGKGVGGFSGAGRSASPEPIYATIDFDEANQAGFPLRRSAA  976

Query  981   VNDLSKVGLSREQELTRRIGDLNQAVSEAKTGHFDNLEQKIDELKDSTKKNALKLFIESA  1040
             VNDLSKVGLSREQELTRRIGDL+QAVSEAKTGHF+NLEQKIDELKDSTKKNALKL +ESA
Sbjct  977   VNDLSKVGLSREQELTRRIGDLSQAVSEAKTGHFGNLEQKIDELKDSTKKNALKLWVESA  1036

Query  1041  KQVPTGLQAKLDNYAANSHTRINSNVRNGAINERATGMLTQKNPEWLKLVNNKIVAHNVG  1100
             KQVPT+LQAKLDNYA+NSHTRINSNV++G+INE+ATGMLTQKNPEWLKLVN+KIVAHNVG
Sbjct  1037  KQVPTSLQAKLDNYATNSHTRINSNVQSGTINEKATGMLTQKNPEWLKLVNDKIVAHNVG  1096

Query  1101  SAHLSEYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDIKSNFVQFLTNTFSTGSYSLMKAN  1160
             SA LS YDKIGFNQKNMKDYSDSFKFSTKLNNAVKDIKS+FVQFLTNTFSTGSYSLMKAN
Sbjct  1097  SAPLSAYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDIKSSFVQFLTNTFSTGSYSLMKAN  1156

Query  1161  VEHGVKNT-TKSGFQKS  1176
             VEHGVKNT TK+GFQKS
Sbjct  1157  VEHGVKNTNTKGGFQKS  1173

14) cagA in NC_020508


> NC_017366_P1|24|G24|385215791|YP_005775747.1|Helicobacter_pylori_F32|+|32443..35964|cagA|HPF32_0523|cag 
pathogenicity island 
protein
Length=1173

 Score = 1535 bits (5826),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1032/1162 (89%), Positives = 1109/1162 (96%), Gaps = 5/1162 (0%)

Query  21    FVPQRFINNLQVAFLKVDNAVASFDPDQKPIVDKNDRDNRQAFEKISQLREEFankaikn  80
             FVPQRFINNLQVAF+KVDNAVASFDPDQKPIVDKND+DNRQAFEKISQLREE+ANKAIKN
Sbjct  17    FVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDKDNRQAFEKISQLREEYANKAIKN  76

Query  81    pakknQYFSNFISKSNDLIDKDSLIDIGSSIKSFQKFGTQRYQIFMNWVSHQKDPSKINT  140
             PAKKNQYFS+FI+KSNDLI+KD+LI ++SS+ SF+KFG QRYQIF +WVS QKDPSKINT
Sbjct  77    PAKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQRYQIFTSWVSLQKDPSKINT  136

Query  141   QRIRSFMENIIQPPISDDKEKAEFLRSAKQTFAGIIIGNQIQSDQKFMGVFEESLKERQE  200
             Q+IR+FMEN+IQPPISDDKEKAEFLRSAKQ+FAGIIIGNQI+SD+KFMGVF+ESLK RQE
Sbjct  137   QQIRNFMENVIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSDEKFMGVFDESLKARQE  196

Query  201   AEKNGEPTGEPTGGDWLDIFLSFVFNKKQSSDLKETLNQEPVPHVQPDIATTTTDIQSLP  260
             AEKN+EP+G    GDWLDIFLSFVFNKKQSSDLKETLNQEP P+ + ++ATTTTDIQ+LP
Sbjct  197   AEKNAEPAG----GDWLDIFLSFVFNKKQSSDLKETLNQEPRPDFEQNLATTTTDIQGLP  252

Query  261   PEARDFLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALSSVLMGSHNGIE  320
             PEARD+LDERGNF KFTLGD+EMLDVEGVAD DPNYKFNQLLIHNNALSS+LMGSH+ IE
Sbjct  253   PEARDLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIHNNALSSMLMGSHSNIE  312

Query  321   PEKVSLLYGGNGGPEARHDWNATVGYKNQQGDNVATLINVHMKNGSGLVIAGGEKGVNNP  380
             PEKVSLLYG+NGGPEARHDWNATVGYKNQQG+NVATLIN H++NGSGL+IAG E G++NP
Sbjct  313   PEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLNNGSGLIIAGNEDGIKNP  372

Query  381   SFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSKKEKEKFQNEIEDFQKD  440
             SFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLS KEKEKFQ EIE+FQKD
Sbjct  373   SFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSEKEKEKFQTEIENFQKD  432

Query  441   SKAYLDALGNDHIAFVSKKDKKHLALVAEFGNGELSYTLKDYGKKQDKALDRETKTTLQG  500
              KAYLDALGNDHIAFVSKKD KHLALV+EFGNGELSYTLKDYGKKQDKALD ETKTTLQG
Sbjct  433   RKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGELSYTLKDYGKKQDKALDGETKTTLQG  492

Query  501   NLKHDGVMFVNYSNFKYTNVSKSPDKGVGTTNGVSHLEANFSKVAVFNLPNLNNLAITNY  560
             +LK DGVMFVNYSNFKYTN SKSP+KG+GTTNGVSHLEANFSKVAVFNLPNLNNLAITNY
Sbjct  493   SLKYDGVMFVNYSNFKYTNASKSPNKGLGTTNGVSHLEANFSKVAVFNLPNLNNLAITNY  552

Query  561   IRRDLEDKLLAKGLSPQEANKLIKDFLNSNKELVEKALNFNKTVAEAKNTGNYDEVKKAQ  620
             IRRDLEDKL AKGLSPQEANKLIKDFLNSNKE+V K  NFNK+VAEAKNTGNYDEVKKAQ
Sbjct  553   IRRDLEDKLWAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAVAEAKNTGNYDEVKKAQ  612

Query  621   KDLEKSLRKREHLEKEVTKKLESRNDNKNRMEAKAQANSQKDKIFALINQEASKEARAVA  680
             KDLEKSLRKREHLEKEV+KKLESRNDNKNRMEAKAQANSQKDKIFALI+QEASKEAR  +
Sbjct  613   KDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKIFALISQEASKEARVAT  672

Query  681   FDQNLKSIRSELFDKLENINKNLKNFGKSFDELKNGKNNDFSKAEETLKALKDSVKDLGI  740
             FD NLK++RSEL DKLENINKNLK+FGKSFDELK+GKNNDFSKAEETLKALKDSVKDLGI
Sbjct  673   FDPNLKGVRSELSDKLENINKNLKDFGKSFDELKSGKNNDFSKAEETLKALKDSVKDLGI  732

Query  741   NPEWISKVENLNTALNEFKNGKNKDFSKVTQAKSDLENSIKDVIINQKITDKVDNLNQAV  800
             NPEWISK+ENLN+ALN+FKNGKNKDFSKVTQAKSDLENSIKDVIINQKITDKVDNLNQAV
Sbjct  733   NPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVIINQKITDKVDNLNQAV  792

Query  801   SIAKATSDFSRVEQALAELKNLSLDLGKNSDLQKSVKngvngtlvgnglSKTEATTLTKN  860
             S  K T+DFS+VEQALAELKNLSLDLGKNSDLQKSVKNGVNGTLV+NGLSKTEATTLTKN
Sbjct  793   SEIKLTGDFSKVEQALAELKNLSLDLGKNSDLQKSVKNGVNGTLVSNGLSKTEATTLTKN  852

Query  861   FSDIRKELneklfgnsnnnnnglknsTEPIYAKVNKKKTGQAASPEEPIYAQVAKKVSAK  920
             FSDIRKELNEKLFGNSNNNNNGLKN+TEPIYA+VNKKKTGQA+SPEEPIYAQVAKKVSAK
Sbjct  853   FSDIRKELNEKLFGNSNNNNNGLKNNTEPIYAQVNKKKTGQATSPEEPIYAQVAKKVSAK  912

Query  921   IDQLNEATLAINRKIDRINKIasagkgvggfsgagrsasPEPIYATIDFDEANQAGFPLR  980
             IDQLNEAT AINRKIDRINKIASAGKGVGGFSGAGRSASPEPIYATIDFDEANQAGFPLR
Sbjct  913   IDQLNEATSAINRKIDRINKIASAGKGVGGFSGAGRSASPEPIYATIDFDEANQAGFPLR  972

Query  981   RSAAVNDLSKVGLSREQELTRRIGNLNQAVSEAKTCHFDNLDQMIDKLKDSTKKNVMNLY  1040
             RSAAVNDLSKVGLSREQELTRRIG+L+QAVSEAKT HF+NL+Q ID LKDSTKKN ++L 
Sbjct  973   RSAAVNDLSKVGLSREQELTRRIGDLSQAVSEAKTGHFGNLEQKIDELKDSTKKNALKLW  1032

Query  1041  VESAKKVPTSLSAKLDDYATNSHTRINSNVKNGAINEKATGMLTQKNPEWLKLVNDKIVA  1100
             VESAK+VPTSL AKLD+YATNSHTRINSNV++G+INEKATGMLTQKNPEWLKLVNDKIVA
Sbjct  1033  VESAKQVPTSLQAKLDNYATNSHTRINSNVQSGTINEKATGMLTQKNPEWLKLVNDKIVA  1092

Query  1101  HNVGSVSLSEYDKIGFNQKNMKDYSDSFKFSTKLNNAIKDIKSGFVQFLTNTFSTASYYC  1160
             HNVGS +LS YDKIGFNQKNMKDYSDSFKFSTKLNNA+KDIKS+FVQFLTNTFST+S Y 
Sbjct  1093  HNVGSAPLSAYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDIKSSFVQFLTNTFSTGS-YS  1151

Query  1161  LAEENAKHGIKNANTKGGFQKS  1182
             L   N  HG+KN+NTKGGFQKS
Sbjct  1152  LMKANVEHGVKNTNTKGGFQKS  1173

15) HPSAT_04065 in NC_017359


> NC_017366_P1|24|G24|385215791|YP_005775747.1|Helicobacter_pylori_F32|+|32443..35964|cagA|HPF32_0523|cag 
pathogenicity island 
protein
Length=1173

 Score = 1494 bits (5670),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 960/1165 (83%), Positives = 1066/1165 (92%), Gaps = 22/1165 (1%)

Query  15    TPSQTAFDPQQFINNLQVAFIKVDSAVASFDPDQKPIVDKNDRDNRQAFNKISQLREEYA  74
             TP QT+F PQ+FINNLQVAFIKVD+AVASFDPDQKPIVDKND+DNRQAF+KISQLREEYA
Sbjct  11    TPDQTGFVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDKDNRQAFEKISQLREEYA  70

Query  75    NKAIKNPTKKNQYFSEFIGKSNDLINKDNLIDTDSSTKSFEKFGTERYQIFMNWVSHQKD  134
             NKAIKNP+KKNQYFS+FI KSNDLINKDNLI  DSS  SF KFG +RYQIF +WVS QKD
Sbjct  71    NKAIKNPAKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQRYQIFTSWVSLQKD  130

Query  135   PSKINTQKIRNFMENIIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSDEKFMGVFEES  194
             PSKINTQ+IRNFMEN+IQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSDEKFMGVF+ES
Sbjct  131   PSKINTQQIRNFMENVIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSDEKFMGVFDES  190

Query  195   LKERQEAEKKGELAGGDWFDIFLSFVFGKEQSSDLKETLNQEPRPSVEQNIATTPTDIQG  254
             LK RQEAEK++E AGGDW+DIFLSFVF K QSSDLKETLNQEPRP  EQN+ATT TDIQG
Sbjct  191   LKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPDFEQNLATTTTDIQG  250

Query  255   LPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALSSMLMGSHSN  314
             LPPEARDLLDERGNF KFTLGD+EMLDVEGVAD DPNYKFNQLLIHNNALSSMLMGSHSN
Sbjct  251   LPPEARDLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIHNNALSSMLMGSHSN  310

Query  315   IEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINMHLKNGSGLVIAGNENGIN  374
             IEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLIN HL+NGSGL+IAGNE+GI+
Sbjct  311   IEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLNNGSGLIIAGNEDGIK  370

Query  375   NPSFYLYKKDQLTGLKQALSQEEIQNKVDFMEFLAQNNARLDNLSEEEKGKFQNEIGNFQ  434
             NPSFYLYK DQLTGLKQALSQEEIQNKVDFMEFLAQNNA+LDNLSE EK KFQ EI NFQ
Sbjct  371   NPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSEKEKEKFQTEIENFQ  430

Query  435   KDPKAYLDALGNDRIAFVSKKDQKHLALVTEFGNGGLSYTLKDYGKKQDRALDRETKTTL  494
             KD KAYLDALGND+IAFVSKKD KHLALVTEFGNG LSYTLKDYGKKQD+ALD ETKTTL
Sbjct  431   KDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGELSYTLKDYGKKQDKALDGETKTTL  490

Query  495   QGNLKDDGVMFVNYSNFKYTNASKSPNEGIGATNGVSHLEANFSKVAVFNLSDLNSLAIS  554
             QG+LK DGVMFVNYSNFKYTNASKSPN G+G+TNGVSHLEANFSKVAVFNL++LN+LAI+
Sbjct  491   QGSLKYDGVMFVNYSNFKYTNASKSPNKGLGTTNGVSHLEANFSKVAVFNLPNLNNLAIT  550

Query  555   SFARRNLEDTLIAKGLPPKEANKIIKDFLNSNKELLGKSLNFNKAVAEAKNTGNYDGVKK  614
             ++ RR+LED L AKGL+P+EANK+IKDFLNSNKE++GK  NFNKAVAEAKNTGNYD VKK
Sbjct  551   NYIRRDLEDKLWAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAVAEAKNTGNYDEVKK  610

Query  615   AQKDLEKSIRKRELLEKEVTKKFESKSGNKNKMEAKAQANSKKDEIFALINKEAYKDARI  674
             AQKDLEKS+RKRE LEKEV+KK+ES+++NKN+MEAKAQANS+KD IFALI++EA K+AR+
Sbjct  611   AQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKIFALISQEASKEARV  670

Query  675   TAYAQNLKNIKRELSDKIENINKNLKDFGQSFDALKSGKNKDFSKAEETLKALKSSVKDL  734
             +++  NLK ++ ELSDK+ENINKNLKDFG+SFD LKSGKN+DFSKAEETLKALK SVKDL
Sbjct  671   ATFDPNLKGVRSELSDKLENINKNLKDFGKSFDELKSGKNNDFSKAEETLKALKDSVKDL  730

Query  735   GINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSIKDVLINQEITDKVDNLNQ  794
             GINPEWISK+ENLNAALN+FKNGKNKDFSKVTQAKSDLENSIKDV+INQ ITDKVDNLNQ
Sbjct  731   GINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVIINQKITDKVDNLNQ  790

Query  795   AVLIAKAIGDFSGVEQALAELKNFSTDQKVGKNSDLQKSVKNGVNEILVGNGLSKTEATT  854
             AV   K  GDFS VEQALAELKN+S D  +GKNSDLQKSVKNGVN  LV+NGLSKTEATT
Sbjct  791   AVSEIKLTGDFSKVEQALAELKNLSLD--LGKNSDLQKSVKNGVNGTLVSNGLSKTEATT  848

Query  855   LTKKFSDIKKELNEK-FANFNKNNDGLKNSAEPIYAQVNKKKTGQAASPEEPIYTQVAKK  913
             LTK+FSDI+KELNEK F+N N+NN+GLKN++EPIYAQVNKKKTGQA+SPEEPIY+QVAKK
Sbjct  849   LTKNFSDIRKELNEKLFGNSNNNNNGLKNNTEPIYAQVNKKKTGQATSPEEPIYAQVAKK  908

Query  914   VNAKIDQL--------------NKNASASKGVGDFSGAGRLDSPEPIYATID---DLGGS  956
             V+AKIDQL              NK ASA+KGVG+FSGAGR  SPEPIYATID      ++
Sbjct  909   VSAKIDQLNEATSAINRKIDRINKIASAGKGVGGFSGAGRSASPEPIYATIDFDEANQAG  968

Query  957   FSLKRHAKVDDLTKVGLSREQELTQKIGNLNQAVSEAKAGFFGNLEQTMDRLKDSTKKNV  1016
             F+L+R A V+DL+KVGLSREQELT++IG+L+QAVSEAK+G FGNLEQ +D LKDSTKKN 
Sbjct  969   FPLRRSAAVNDLSKVGLSREQELTRRIGDLSQAVSEAKTGHFGNLEQKIDELKDSTKKNA  1028

Query  1017  VNLWVEDTKKVPTSLQAKLDNYTTNNHTRINSNVKNGTINEKAIGMLTQKNPEWLKLVND  1076
             ++LWVE +K+VPTSLQAKLDNY+TN+HTRINSNV++GTINEKA GMLTQKNPEWLKLVND
Sbjct  1029  LKLWVESAKQVPTSLQAKLDNYATNSHTRINSNVQSGTINEKATGMLTQKNPEWLKLVND  1088

Query  1077  KIVAHNVGSTPLSDYDKIGFNQKNMKDYSDSFKFSTKLSNAVKNIKSGFEQFLTDCISAG  1136
             KIVAHNVGS+PLS YDKIGFNQKNMKDYSDSFKFSTKL+NAVK+IKS+F QFLT+ +S+G
Sbjct  1089  KIVAHNVGSAPLSAYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDIKSSFVQFLTNTFSTG  1148

Query  1137  SYNPMKA--EHGVKNINTKSGFQKS  1159
             SY+ MKA  EHGVKN NTK+GFQKS
Sbjct  1149  SYSLMKANVEHGVKNTNTKGGFQKS  1173

16) cagA in NC_020509


> NC_017366_P1|24|G24|385215791|YP_005775747.1|Helicobacter_pylori_F32|+|32443..35964|cagA|HPF32_0523|cag 
pathogenicity island 
protein
Length=1173

 Score = 1480 bits (5617),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 990/1219 (82%), Positives = 1105/1219 (91%), Gaps = 49/1219 (4%)

Query  1     MTNEtidqtitpdqtdFVPQRFINNLQVAFIKVDSAVASFDPDQKPIVDKNDRDNRQAFE  60
             MTNETIDQT TPDQT+FVPQRFINNLQVAFIKVD+AVASFDPDQKPIVDKND+DNRQAFE
Sbjct  1     MTNETIDQTTTPDQTGFVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDKDNRQAFE  60

Query  61    KISQLREEYANKAIKNPTKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQRYQI  120
             KISQLREEYANKAIKNP+KKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQRYQI
Sbjct  61    KISQLREEYANKAIKNPAKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQRYQI  120

Query  121   FTSWVSLQKDPSKINTQKIRDFMENIIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSD  180
             FTSWVSLQKDPSKINTQ+IR+FMEN+IQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSD
Sbjct  121   FTSWVSLQKDPSKINTQQIRNFMENVIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSD  180

Query  181   QKFMGVFDESLKERQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLDQEPVPHVQPD  240
             +KFMGVFDESLK RQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETL+QEP P+ + +
Sbjct  181   EKFMGVFDESLKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPDFEQN  240

Query  241   IATTTTDIQGLPPESRDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNAL  300
             +ATTTTDIQGLPPE+RDLLDERGNF KFTLGD+EMLDVEGVAD DPNYKFNQLLIHNNAL
Sbjct  241   LATTTTDIQGLPPEARDLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIHNNAL  300

Query  301   SSVLMGSHNGVEPEKVSLLYGGNGGPEARHDWNATVGYKNQQGSNVATLINVHMKNGSGL  360
             SS+LMGSH+ +EPEKVSLLYG+NGGPEARHDWNATVGYKNQQG+NVATLIN H++NGSGL
Sbjct  301   SSMLMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLNNGSGL  360

Query  361   VIAGGEKGVNNPSFYLYKEDQLTGLKQALSQKEIQNKVDFMEFLAKNNARLDNLSEKEKE  420
             +IAG E G++NPSFYLYKEDQLTGLKQALSQ EIQNKVDFMEFLA+NNA+LDNLSEKEKE
Sbjct  361   IIAGNEDGIKNPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSEKEKE  420

Query  421   KFQTEIEDFQKNPKAYLDALGNDHIAFVSKKDKKHLALVTEFGNGELSYTLKDYGKKQDK  480
             KFQTEIE+FQK+ KAYLDALGNDHIAFVSKKD KHLALVTEFGNGELSYTLKDYGKKQDK
Sbjct  421   KFQTEIENFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGELSYTLKDYGKKQDK  480

Query  481   ALDRETKTTLQGNLKHDGVMFVNYSNFKYTNASKSPDKGVGATNGVSHLEANFSKVAVFN  540
             ALD ETKTTLQG+LK DGVMFVNYSNFKYTNASKSP+KG+G+TNGVSHLEANFSKVAVFN
Sbjct  481   ALDGETKTTLQGSLKYDGVMFVNYSNFKYTNASKSPNKGLGTTNGVSHLEANFSKVAVFN  540

Query  541   LPNLNNLAITSYMRRDLEGKLSAKGLSLQEANKLIKDFLNSNKELVEKALNFNKTVAEAK  600
             LPNLNNLAIT+Y+RRDLE+KL AKGLS QEANKLIKDFLNSNKE+V K  NFNK+VAEAK
Sbjct  541   LPNLNNLAITNYIRRDLEDKLWAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAVAEAK  600

Query  601   NTGNYDEVKKAQKDLEKSIRKREHLEKEVTKKMENRNGNKNRMEAKAQANSQKDKIFAII  660
             NTGNYDEVKKAQKDLEKS+RKREHLEKEV+KK+E+RN+NKNRMEAKAQANSQKDKIFA+I
Sbjct  601   NTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKIFALI  660

Query  661   NEEAGKEARGAACVQNLKSIRMELSDKLENINKNLKDLDKSFDEFKNGKNKDFSKTEETL  720
             ++EA+KEAR A+   NLK++R ELSDKLENINKNLKD++KSFDE+K+GKN+DFSK+EETL
Sbjct  661   SQEASKEARVATFDPNLKGVRSELSDKLENINKNLKDFGKSFDELKSGKNNDFSKAEETL  720

Query  721   KALKDSVKDLGINPEWISKVENLNTALNEFKNGKNKDFSKVIQAKSDLENSIKDVIINQK  780
             KALKDSVKDLGINPEWISK+ENLN+ALN+FKNGKNKDFSKV QAKSDLENSIKDVIINQK
Sbjct  721   KALKDSVKDLGINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVIINQK  780

Query  781   ITDKVDNLNQAVSIAKATGDFSGVEQALADLKNFSKGQLTQQAQKNEDFNTGKNSELYQS  840
             ITDKVDNLNQAVS  K TGDFS VEQALA+LKN+S             ++ GKNS+L +S
Sbjct  781   ITDKVDNLNQAVSEIKLTGDFSKVEQALAELKNLS-------------LDLGKNSDLQKS  827

Query  841   VKngvngtlvgnglSKAEATTLSKNFSDIKKElnaklgnfnnnnndglknSIEPIYAKVN  900
             VKNGVNGTLV+NGLSK+EATTL+KNFSDI+KELN KL   +NNNN+GLKN+ EPIYA+VN
Sbjct  828   VKNGVNGTLVSNGLSKTEATTLTKNFSDIRKELNEKLFGNSNNNNNGLKNNTEPIYAQVN  887

Query  901   KKKAGQAASPEESIYTQVAKKVNAKIDQLNQAASGFGNVGQAGFPLKRHTKVDDLSKVGL  960
             KKK+GQA+SPEE+IY+QVAKKV+AKIDQLN+A+S++            + K+D ++K++ 
Sbjct  888   KKKTGQATSPEEPIYAQVAKKVSAKIDQLNEATSAI------------NRKIDRINKIAS  935

Query  961   SANHEPIYATIDDLGGPFPLKRHTKVDDLSKVGLSANHEPIYATID---DLGGPFPLTRH  1017
             +++                      V+++S  G SA+ EPIYATID      + FPL R 
Sbjct  936   AGKG---------------------VGGFSGAGRSASPEPIYATIDFDEANQAGFPLRRS  974

Query  1018  TKVDDLSKVGLSREQELTQKIDNLNQALSEAEACHFGNLEQMIDKLKDSTKKNVMNLYVE  1077
             + V+DLSKVGLSREQELT++I++L+QA+SEA + HFGNLEQ ID LKDSTKKN ++L VE
Sbjct  975   AAVNDLSKVGLSREQELTRRIGDLSQAVSEAKTGHFGNLEQKIDELKDSTKKNALKLWVE  1034

Query  1078  SAKKVPTSLSAKLDNYATNSHTRINSNVKNGTINEKETSMLMRKNPEWLKLVNDKIVAHN  1137
             SAK+VPTSL AKLDNYATNSHTRINSNV++GTINEK T+ML +KNPEWLKLVNDKIVAHN
Sbjct  1035  SAKQVPTSLQAKLDNYATNSHTRINSNVQSGTINEKATGMLTQKNPEWLKLVNDKIVAHN  1094

Query  1138  VGSAPLSAYDKIGFNQKNMKDYSDSFKFSTRLSNAVKDIKSDFVQFLTNIFSMGSYSLMK  1197
             VGSAPLSAYDKIGFNQKNMKDYSDSFKFST+L+NAVKDIKS FVQFLTN FS GSYSLMK
Sbjct  1095  VGSAPLSAYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDIKSSFVQFLTNTFSTGSYSLMK  1154

Query  1198  ASVEHGVKNTNTKGGFQKS  1216
             A+VEHGVKNTNTKGGFQKS
Sbjct  1155  ANVEHGVKNTNTKGGFQKS  1173

17) HPPN135_02705 in NC_017379


> NC_017366_P1|24|G24|385215791|YP_005775747.1|Helicobacter_pylori_F32|+|32443..35964|cagA|HPF32_0523|cag 
pathogenicity island 
protein
Length=1173

 Score = 1470 bits (5579),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 956/1209 (80%), Positives = 1089/1209 (91%), Gaps = 43/1209 (3%)

Query  1     MANETINQTEKPDQTPSQTAFDPQQFINNLQVAFIKVDSAVASFDPDQKPIVDKNDRDNR  60
             M+NETI+QT     TP QT+F PQ+FINNLQVAFIKVD+AVASFDPDQKPIVDKND+DNR
Sbjct  1     MTNETIDQTT----TPDQTGFVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDKDNR  56

Query  61    QAFNGISQLREEYANKAIKNPTKKNQYFSDFIDKSNDLINKDNLIDTDSSTKSFQKFGTQ  120
             QAF+ ISQLREEYANKAIKNP+KKNQYFSDFI+KSNDLINKDNLI  DSS  SF+KFG Q
Sbjct  57    QAFEKISQLREEYANKAIKNPAKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQ  116

Query  121   RYQIFMNWVSHQKDPSKINTQKIRNFMENIIQPPISDDKEKAEFLRSAKQSFAGIIIGNQ  180
             RYQIF +WVS QKDPSKINTQ+IRNFMEN+IQPPISDDKEKAEFLRSAKQSFAGIIIGNQ
Sbjct  117   RYQIFTSWVSLQKDPSKINTQQIRNFMENVIQPPISDDKEKAEFLRSAKQSFAGIIIGNQ  176

Query  181   IRSDEKFMGVFDESLKERQEAEKNGEPASGDWLDIFLSFVFGKKQSSDFKETLNQEPRPN  240
             IRSDEKFMGVFDESLK RQEAEKN+EPA+GDWLDIFLSFVF KKQSSD+KETLNQEPRP+
Sbjct  177   IRSDEKFMGVFDESLKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPD  236

Query  241   VEQNIAATTTPIQGLPLEARDLLDERGDFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIH  300
              EQN+A+TTT IQGLP EARDLLDERG+F KFTLGD+EMLDVEGVAD DPNYKFNQLLIH
Sbjct  237   FEQNLATTTTDIQGLPPEARDLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIH  296

Query  301   NNALSSMLMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLKN  360
             NNALSSMLMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHL+N
Sbjct  297   NNALSSMLMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLNN  356

Query  361   GSGLVITGNENGINNPSFYLYKTDQLTGLKQALSQEEIQNKLGFMELLVQNNAKLDNLSE  420
             GSGL+I+GNE+GI+NPSFYLYK DQLTGLKQALSQEEIQNK++FME+L QNNAKLDNLSE
Sbjct  357   GSGLIIAGNEDGIKNPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSE  416

Query  421   EEKEKFQTEIGNFQKDPKAYLDSLGKDQIAFVSKKDQKHLALVTEFGNGELSYTLKDYGK  480
              EKEKFQTEI NFQKD KAYLD+LG+D+IAFVSKKD KHLALVTEFGNGELSYTLKDYGK
Sbjct  417   KEKEKFQTEIENFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGELSYTLKDYGK  476

Query  481   TQDRALDRETKTTLQGNLKHDGVMFVNYSNFKYTNASKSPNEGIGATNGVSHLEANFSKV  540
              QD+ALD ETKTTLQG+LK DGVMFVNYSNFKYTNASKSPN G+G+TNGVSHLEANFSKV
Sbjct  477   KQDKALDGETKTTLQGSLKYDGVMFVNYSNFKYTNASKSPNKGLGTTNGVSHLEANFSKV  536

Query  541   AVFNLPNLNGLAVSSFARRNLEDKLIAKGLPAKESSKIIKDFLNSNKELLEKSLNFNKAV  600
             AVFNLPNLN LA++++ RR+LEDKL AKGL+++E++K+IKDFLNSNKE++ K  NFNKAV
Sbjct  537   AVFNLPNLNNLAITNYIRRDLEDKLWAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAV  596

Query  601   AESKNTGNYDGVKKAQKDLEKSIRKRERLEKEVTKQFESKSSNKNKMEAKAQANSHKDEI  660
             AE+KNTGNYD VKKAQKDLEKS+RKRE+LEKEV+K++ES++ NKN+MEAKAQANS+KD I
Sbjct  597   AEAKNTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKI  656

Query  661   FVLINEGAHKEARIAAYSQNLKGIRRELSDKIENINKNLKDFGESFDALKSGKNKDFSKV  720
             F LI++ A KEAR+A++  NLKG+R ELSDK+ENINKNLKDFG SFD LKSGKN+DFSK 
Sbjct  657   FALISQEASKEARVATFDPNLKGVRSELSDKLENINKNLKDFGKSFDELKSGKNNDFSKA  716

Query  721   EETLKALQSSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSIKDVI  780
             EETLKAL+ SVKDLGINPEWISK+ENLNAALN+FKNGKNKDFSKVTQAKSDLENSIKDVI
Sbjct  717   EETLKALKDSVKDLGINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVI  776

Query  781   INQEITDKVDNLNQAVLVAKAIGDFSGVEQALAELKNFSTDQKNESFNVGKNSDLQKSVK  840
             INQ ITDKVDNLNQAV   K  GDFS VEQALAELKN+       S+++GKNSDLQKSVK
Sbjct  777   INQKITDKVDNLNQAVSEIKLTGDFSKVEQALAELKNL-------SLDLGKNSDLQKSVK  829

Query  841   SGVNGTLVGNGLSKTEATTLTKKISDIRKelnekf-ansnnnnnglknsTEPIYAQVNKK  899
             +GVNGTLV+NGLSKTEATTLTK++SDIRKELNEK+ +NSNNNNNGLKN+TEPIYAQVNKK
Sbjct  830   NGVNGTLVSNGLSKTEATTLTKNFSDIRKELNEKLFGNSNNNNNGLKNNTEPIYAQVNKK  889

Query  900   KTGQVASPEEPIYTQVAKKVNAKIDRLNQIASGLGGVGQAAGFPLKKHDKVDDLSKVGRS  959
             KTGQ +SPEEPIY+QVAKKV+AKID+LN+ +S++           +K D+++ ++  G++
Sbjct  890   KTGQATSPEEPIYAQVAKKVSAKIDQLNEATSAIN----------RKIDRINKIASAGKG  939

Query  960   DSPEPIYATIDDLGGPFPLSRLGRSDSSEPIYATID----DLGGPSLKRYAGVDDLSKVG  1015
                      +++++G+      GRS S+EPIYATID    + +G +L+R A+V+DLSKVG
Sbjct  940   ---------VGGFSGA------GRSASPEPIYATIDFDEANQAGFPLRRSAAVNDLSKVG  984

Query  1016  LSRDQKLTQKIGNLDQAVSEAKAGFFGNLEQTMDRLKDSTKKNVVNLWVESVKKVPASLQ  1075
             LSR+Q LT++IG+L QAVSEAK+G FGNLEQ +D LKDSTKKN ++LWVES K+VP+SLQ
Sbjct  985   LSREQELTRRIGDLSQAVSEAKTGHFGNLEQKIDELKDSTKKNALKLWVESAKQVPTSLQ  1044

Query  1076  EKLDNYATNSHTRINSNVKNGTINEKATGMLTQKNPEWLKLVNDKIVAHNVGSTPLSDYD  1135
              KLDNYATNSHTRINSNV++GTINEKATGMLTQKNPEWLKLVNDKIVAHNVGS+PLS YD
Sbjct  1045  AKLDNYATNSHTRINSNVQSGTINEKATGMLTQKNPEWLKLVNDKIVAHNVGSAPLSAYD  1104

Query  1136  KIGFNQKNMKDYSDSFKFSTKLSNAVKNTKSGFVQFLTDSISAGSYNPIKA--EHGVKNI  1193
             KIGFNQKNMKDYSDSFKFSTKL+NAVK+ KS+FVQFLT+++S+GSY+ +KA  EHGVKN 
Sbjct  1105  KIGFNQKNMKDYSDSFKFSTKLNNAVKDIKSSFVQFLTNTFSTGSYSLMKANVEHGVKNT  1164

Query  1194  NTKSGFQKS  1202
             NTK+GFQKS
Sbjct  1165  NTKGGFQKS  1173

18) HPAG1_0524 in NC_008086


> NC_017366_P1|24|G24|385215791|YP_005775747.1|Helicobacter_pylori_F32|+|32443..35964|cagA|HPF32_0523|cag 
pathogenicity island 
protein
Length=1173

 Score = 1466 bits (5563),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 940/1206 (78%), Positives = 1073/1206 (89%), Gaps = 39/1206 (3%)

Query  1     MTNETINQQPQTE-AAFNPQQFINNLQVAFLKVDNAVVSYDPDQKPIVDKNDRDNRQAFD  59
             MTNETI+Q    + ++F PQ+FINNLQVAF+KVDNAV S+DPDQKPIVDKND+DNRQAF+
Sbjct  1     MTNETIDQTTTPDQTGFVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDKDNRQAFE  60

Query  60    GISQLREEYSNKAIKNPTKKNQYFSDFINKSNDLINKDNLIDVESSTKSFQKFGDQRYRI  119
              ISQLREEY+NKAIKNP+KKNQYFSDFINKSNDLINKDNLI V+SS  SF+KFGDQRY+I
Sbjct  61    KISQLREEYANKAIKNPAKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQRYQI  120

Query  120   FTSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQSFAGIIIGNQIRTD  179
             FTSWVS Q+DPSKINT+ IRNFMEN+IQPPI+DDKEKAEFL+SAKQSFAGIIIGNQIR+D
Sbjct  121   FTSWVSLQKDPSKINTQQIRNFMENVIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSD  180

Query  180   QKFMGVFDEFLKERQEAEKNGGPTGGDWLDIFLSFIFDKKQSSDVKEAINQEPVPHVQPD  239
             +KFMGVFDE LK RQEAEKN+ P+GGDWLDIFLSF+F+KKQSSD+KE++NQEP P+ + +
Sbjct  181   EKFMGVFDESLKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPDFEQN  240

Query  240   IATTTTDIQGLPPESRDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNAL  299
             +ATTTTDIQGLPPE+RDLLDERGNF KFTLGD+EMLDVEGVAD DPNYKFNQLLIHNNAL
Sbjct  241   LATTTTDIQGLPPEARDLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIHNNAL  300

Query  300   SSVLMGSHDGIEPEKVSLLYGNNGGPEARHDWNATVGYKNQQGDNVATLINVHMKNGSGL  359
             SS+LMGSH  IEPEKVSLLYG+NGGPEARHDWNATVGYKNQQG+NVATLIN H++NGSGL
Sbjct  301   SSMLMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLNNGSGL  360

Query  360   VIAGGEKGVNNPSFYLYKEDQLTGLKQALSQEEIRNKVDFMEFLAQNNAKLDNLSEKEKE  419
             +IAG E G++NPSFYLYKEDQLTGLKQALSQEEI+NKVDFMEFLAQNNAKLDNLSEKEKE
Sbjct  361   IIAGNEDGIKNPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSEKEKE  420

Query  420   KFQTEIKDFQKDSKAYLDALGNDRIAFVSKKDTKHSALLTEFGNGDLSYTLKDYGKKADK  479
             KFQTEI +FQKD KAYLDALGND+IAFVSKKD KH AL+TEFGNG+LSYTLKDYGKK DK
Sbjct  421   KFQTEIENFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGELSYTLKDYGKKQDK  480

Query  480   ALDREKNVTLQGNLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEANLSKVAVFN  539
             ALD E + TLQG+LK DGVMFV+YSNFKYTNASK+PNKG+G TNGVSHLEAN+SKVAVFN
Sbjct  481   ALDGETKTTLQGSLKYDGVMFVNYSNFKYTNASKSPNKGLGTTNGVSHLEANFSKVAVFN  540

Query  540   LPNLNNLAITSYVRRDLEDKLWAKGLSPQEANKLIKDFLNSNKELVGKTLNFNKAVAEAK  599
             LPNLNNLAIT+Y+RRDLEDKLWAKGLSPQEANKLIKDFLNSNKE+VGK  NFNKAVAEAK
Sbjct  541   LPNLNNLAITNYIRRDLEDKLWAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAVAEAK  600

Query  600   NTGDYDEVKKAHKDLEKSLRKREHLEKEVAKKLESKSGNKNKMEAKSQANSQKDEIFALI  659
             NTG+YDEVKKA+KDLEKSLRKREHLEKEVAKKLES+++NKN+MEAK+QANSQKD IFALI
Sbjct  601   NTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKIFALI  660

Query  660   NKEANRDARAIAYAQNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKTEETL  719
             ++EA+++AR  ++  NLKG++ ELSDKLENINK+LKDF+KSFDE+K+GKN+DFSK+EETL
Sbjct  661   SQEASKEARVATFDPNLKGVRSELSDKLENINKNLKDFGKSFDELKSGKNNDFSKAEETL  720

Query  720   KALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSIKDVIINQK  779
             KALK+SVKDLGINPEWISK+ENLNAALN+FKNGKNKDFSKVTQAKSDLENSIKDVIINQK
Sbjct  721   KALKDSVKDLGINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVIINQK  780

Query  780   ITDKADNLNQAVSVAKTTGDFSRVEQALADLKNFSKGQLAQQAQKNEDFNTGKNSELYQS  839
             ITDK DNLNQAVS  K TGDFS+VEQALA+LKN+S             ++ GKNS+L +S
Sbjct  781   ITDKVDNLNQAVSEIKLTGDFSKVEQALAELKNLS-------------LDLGKNSDLQKS  827

Query  840   VKNGVNKTLVGNGLSGIEATALAKNFSDIkkelnek--fknfnnnnnnglknEPIYAKVN  897
             VKNGVN TLV+NGLS  EAT+L+KNFSDI+KELNEK   ++ NNNN    + EPIYA+VN
Sbjct  828   VKNGVNGTLVSNGLSKTEATTLTKNFSDIRKELNEKLFGNSNNNNNGLKNNTEPIYAQVN  887

Query  898   KKKTGQVASPEEPIYAKVNKKKTGQVASPEEPIYTQVAKKVNAKIDRLNQIASGLGGVGQ  957
             KKKTGQ +SPEEPIYA+V KK ++++   +E+     +  +N KIDR+N+IAS+  GVG 
Sbjct  888   KKKTGQATSPEEPIYAQVAKKVSAKIDQLNEA-----TSAINRKIDRINKIASAGKGVG-  941

Query  958   AAGFPLKRHDKVDDLSKVGRSVSPEPIYATID---DLGGPFPLKRHDKVDDLSKVGLSRN  1014
               GF           S  GRS SPEPIYATID      + FPL+R   V+DLSKVGLSR+
Sbjct  942   --GF-----------SGAGRSASPEPIYATIDFDEANQAGFPLRRSAAVNDLSKVGLSRE  988

Query  1015  QELAQKIDNLNQAVSEAKAGFFGNLEQAIDKLKDSTKHNPMNLWVESAKKVPASLSAKLD  1074
             QEL+++I++L+QAVSEAK+G FGNLEQ ID LKDSTK N+++LWVESAK+VP+SL AKLD
Sbjct  989   QELTRRIGDLSQAVSEAKTGHFGNLEQKIDELKDSTKKNALKLWVESAKQVPTSLQAKLD  1048

Query  1075  NYATNSHTRINSNIQNGAINEKVTGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDRIGF  1134
             NYATNSHTRINSN+Q+G+INEK TGMLTQKNPEWLKLVNDKIVAHNVGS PLS YD+IGF
Sbjct  1049  NYATNSHTRINSNVQSGTINEKATGMLTQKNPEWLKLVNDKIVAHNVGSAPLSAYDKIGF  1108

Query  1135  NQKNMKDYSDSFKFSTKLNNAVKDIKSGFVQFLTNTFSTASYYCLAEENAKHGIKNANTK  1194
             NQKNMKDYSDSFKFSTKLNNAVKDIKS+FVQFLTNTFST+S Y L   N  HG+KN+NTK
Sbjct  1109  NQKNMKDYSDSFKFSTKLNNAVKDIKSSFVQFLTNTFSTGS-YSLMKANVEHGVKNTNTK  1167

Query  1195  GGFQKS  1200
             GGFQKS
Sbjct  1168  GGFQKS  1173

19) HPLT_02705 in NC_017362


> NC_017366_P1|24|G24|385215791|YP_005775747.1|Helicobacter_pylori_F32|+|32443..35964|cagA|HPF32_0523|cag 
pathogenicity island 
protein
Length=1173

 Score = 1426 bits (5413),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 951/1187 (81%), Positives = 1075/1187 (91%), Gaps = 21/1187 (1%)

Query  1     MTNETINQQPQTE-AAFNPQQFINNLQVAFLKVDNVVSSFDPDQKPIVDKNDRDNRQAFE  59
             MTNETI+Q    + ++F PQ+FINNLQVAF+KVDN V+SFDPDQKPIVDKND+DNRQAFE
Sbjct  1     MTNETIDQTTTPDQTGFVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDKDNRQAFE  60

Query  60    KISQLMEEFankaiknpakknQYFSSFISKSNDLIDKGSLIDTGSSVKSFQKFGTQRYQI  119
             KISQL EE+ANKAIKNPAKKNQYFS FI+KSNDLI+K++LI  +SSV SF+KFG QRYQI
Sbjct  61    KISQLREEYANKAIKNPAKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQRYQI  120

Query  120   FMNWVSHQKDPSKINTQEIRGFMENIIQPPISDDKEKAEFLRSAKQAFAGIIIGNQIRSD  179
             F +WVS QKDPSKINTQ+IR FMEN+IQPPISDDKEKAEFLRSAKQ+FAGIIIGNQIRSD
Sbjct  121   FTSWVSLQKDPSKINTQQIRNFMENVIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSD  180

Query  180   QKFMGVFDESLKERQEAEKNGEPNGGDWFDIFLSFVFGKKQYSDLKETLNQEPMSNVEQN  239
             +KFMGVFDESLK RQEAEKN+EP GGDW+DIFLSFVF KKQ SDLKETLNQEP ++ EQN
Sbjct  181   EKFMGVFDESLKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPDFEQN  240

Query  240   IATTTTDIQGLPPESRDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLVIHNNAL  299
             +ATTTTDIQGLPPE+RDLLDERGNF KFTLGD+EMLDVEGVAD DPNYKFNQL+IHNNAL
Sbjct  241   LATTTTDIQGLPPEARDLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIHNNAL  300

Query  300   SSVLMGSHNGIEPEKVSLLYGGNGGPEARHDWNATVGYKNQQGDNVATLINVHMKNGSGL  359
             SS+LMGSH+ IEPEKVSLLYG+NGGPEARHDWNATVGYKNQQG+NVATLIN H++NGSGL
Sbjct  301   SSMLMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLNNGSGL  360

Query  360   VIAGGEKGVNNPSFYLYKEDQLTGSQRALSQKEIQNKVDFMEFLAQNNAKLDNLSKKEKE  419
             +IAG E G++NPSFYLYKEDQLTG ++ALSQ EIQNKVDFMEFLAQNNAKLDNLS KEKE
Sbjct  361   IIAGNEDGIKNPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSEKEKE  420

Query  420   KFQNEIEDFQKDSKAYLDALGNDHIAFVSKKDKKHLALVAEFGNGDLSYTLKDYGKKQDK  479
             KFQ EIE+FQKD KAYLDALGNDHIAFVSKKD KHLALV+EFGNG+LSYTLKDYGKKQDK
Sbjct  421   KFQTEIENFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGELSYTLKDYGKKQDK  480

Query  480   ALDREIKTTLQGNLKHDGVMFVNYSNFKYTNASKSPDKGVGATNGVSHLEANLSKVAVFN  539
             ALD E KTTLQG+LK DGVMFVNYSNFKYTNASKSP+KG+G+TNGVSHLEAN+SKVAVFN
Sbjct  481   ALDGETKTTLQGSLKYDGVMFVNYSNFKYTNASKSPNKGLGTTNGVSHLEANFSKVAVFN  540

Query  540   LPNLNNLAITSYIRRDLEDKLWAKGLSPQEANKLIKDFLNSNKELVEKALNFNKTVAEAK  599
             LPNLNNLAIT+YIRRDLEDKLWAKGLSPQEANKLIKDFLNSNKE+V K  NFNK+VAEAK
Sbjct  541   LPNLNNLAITNYIRRDLEDKLWAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAVAEAK  600

Query  600   NTGNYDEVKRTQKDLEKSIrkrehlekevvkkleNRNDNKNRMEAKAQANSQKDKIFAII  659
             NTGNYDEVK++QKDLEKS+RKREHLEKEV KKLE+RNDNKNRMEAKAQANSQKDKIFA+I
Sbjct  601   NTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKIFALI  660

Query  660   NEEAGKEARAAACVQNLKGIRMELSDKLENINKNLKDFDKSFDEFKNGKNKDFSKTEETL  719
             ++EA+KEAR A+   NLKG+R ELSDKLENINKNLKDF+KSFDE+K+GKN+DFSK+EETL
Sbjct  661   SQEASKEARVATFDPNLKGVRSELSDKLENINKNLKDFGKSFDELKSGKNNDFSKAEETL  720

Query  720   KALKDSVKDLGINPEWISKVENLNTALNEFKNGKNKDFSKVTQAKSDLENSIKDVIINQK  779
             KALKDSVKDLGINPEWISK+ENLN+ALN+FKNGKNKDFSKVTQAKSDLENSIKDVIINQK
Sbjct  721   KALKDSVKDLGINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVIINQK  780

Query  780   VTDKVDNLNQAVSIAKETGDFSGVEQALADLKNFSKGQLAQQAQKNEDFNTGKNSELYQS  839
             +TDKVDNLNQAVS  K TGDFS VEQALA+LKN+S             ++ GKNS+L +S
Sbjct  781   ITDKVDNLNQAVSEIKLTGDFSKVEQALAELKNLS-------------LDLGKNSDLQKS  827

Query  840   VKNGVNKTLVGNGLSGIEATALAKKFSDIkkelnek--fknfnnnnnnglknEPIYAKVN  897
             VKNGVN TLV+NGLS  EAT+L+K+FSDI+KELNEK   ++ NNNN    + EPIYA+VN
Sbjct  828   VKNGVNGTLVSNGLSKTEATTLTKNFSDIRKELNEKLFGNSNNNNNGLKNNTEPIYAQVN  887

Query  898   KKKIGEVASPEEPIYTQVAKKVNAKIDRLNQIASGLG-DVGQATGFPLKRHTKVDDLSKV  956
             KKK G+ +SPEEPIY+QVAKKV+AKID+LN+ +S++   +++   ++      V+++S  
Sbjct  888   KKKTGQATSPEEPIYAQVAKKVSAKIDQLNEATSAINRKIDRINKIA-SAGKGVGGFSGA  946

Query  957   GLSASPEPIYATID---DLGGPFPLKRHTKVDDLSKVGLSRNQELAQKIDNLNQAVLEAK  1013
             G SASPEPIYATID      + FPL+R + V+DLSKVGLSR+QEL+++I++L+QAV EAK
Sbjct  947   GRSASPEPIYATIDFDEANQAGFPLRRSAAVNDLSKVGLSREQELTRRIGDLSQAVSEAK  1006

Query  1014  TSHFDNLDQMIDKLKDSTKKNVMNLYVESAKKVPTSLSAKLDDYATNSHTRINSNVKNGT  1073
             T+HF+NL+Q ID LKDSTKKN ++L VESAK+VPTSL AKLD+YATNSHTRINSNV++GT
Sbjct  1007  TGHFGNLEQKIDELKDSTKKNALKLWVESAKQVPTSLQAKLDNYATNSHTRINSNVQSGT  1066

Query  1074  INEKATGMLTQKNPEWLKLVNDKIVAHNVGSAPLSAYDKIGFNQKNMKDYSDSFKFSTRL  1133
             INEKATGMLTQKNPEWLKLVNDKIVAHNVGSAPLSAYDKIGFNQKNMKDYSDSFKFST+L
Sbjct  1067  INEKATGMLTQKNPEWLKLVNDKIVAHNVGSAPLSAYDKIGFNQKNMKDYSDSFKFSTKL  1126

Query  1134  NNAVKDIKSGFTQFLTNIFSTGSYSLMKASVEHGVKNTNTKGGFQKS  1180
             NNAVKDIKS+F QFLTN FSTGSYSLMKA+VEHGVKNTNTKGGFQKS
Sbjct  1127  NNAVKDIKSSFVQFLTNTFSTGSYSLMKANVEHGVKNTNTKGGFQKS  1173

20) K750_05020 in NC_021217


> NC_017366_P1|24|G24|385215791|YP_005775747.1|Helicobacter_pylori_F32|+|32443..35964|cagA|HPF32_0523|cag 
pathogenicity island 
protein
Length=1173

 Score = 1426 bits (5411),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 913/1186 (77%), Positives = 1063/1186 (90%), Gaps = 19/1186 (1%)

Query  1     MTNETINQQPQTE-AAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNRQAFD  59
             MTNETI+Q    + ++F PQ+FINNLQVAF+KVDNAVAS+DPDQKPIVDKND+DNRQAF+
Sbjct  1     MTNETIDQTTTPDQTGFVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDKDNRQAFE  60

Query  60    GISQLREEYSNKAIKNPTKKNQYFSDFINKSNDLINKDALIDVESSTKSFQKFGDQRYRI  119
              ISQLREEY+NKAIKNP+KKNQYFSDFINKSNDLINKD LI V+SS  SF+KFGDQRY+I
Sbjct  61    KISQLREEYANKAIKNPAKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQRYQI  120

Query  120   FTSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQSFAGIIIGNQIRTD  179
             FTSWVS Q+DPSKINT+ IRNFMEN+IQPPI+DDKEKAEFL+SAKQSFAGIIIGNQIR+D
Sbjct  121   FTSWVSLQKDPSKINTQQIRNFMENVIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSD  180

Query  180   QKFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSFIFDKKQSSDVKEAINQEPVPHVQPD  239
             +KFMGVFDESLK RQEAEKN+ P+GGDWLDIFLSF+F+KKQSSD+KE++NQEP P+ + +
Sbjct  181   EKFMGVFDESLKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPDFEQN  240

Query  240   IATTTTHIQGLPPESRDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNAL  299
             +ATTTT+IQGLPPE+RDLLDERGNF KFTLGD+EMLDVEGVAD DPNYKFNQLLIHNNAL
Sbjct  241   LATTTTDIQGLPPEARDLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIHNNAL  300

Query  300   SSVLMGSHNGIEPEKVSLLYAGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKNGSGL  359
             SS+LMGSH+ IEPEKVSLLY++NGG  A+HDWNATVGYK+QQGNNVAT+IN H++NGSGL
Sbjct  301   SSMLMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLNNGSGL  360

Query  360   VIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIRNKIDFMEFLAQNNAKLDNLSVKEKE  419
             +IAG E GI+NPSFYLYKEDQLTG ++ALSQEEI+NK+DFMEFLAQNNAKLDNLS KEKE
Sbjct  361   IIAGNEDGIKNPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSEKEKE  420

Query  420   KFQNEIEDFQKDSKAYLDALGNDRIAFVSKKDPKHSALITEFGNGDLSYTLKDYGKKADK  479
             KFQ EIE+FQKD KAYLDALGND+IAFVSKKDPKH AL+TEFGNG+LSYTLKDYGKK DK
Sbjct  421   KFQTEIENFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGELSYTLKDYGKKQDK  480

Query  480   ALDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGATNGVSHLEAGFDKVAIFN  539
             ALD E + TLQGSLK DGVMFV+YSNFKYTNASK+PNKG+G+TNGVSHLEA F KVA+FN
Sbjct  481   ALDGETKTTLQGSLKYDGVMFVNYSNFKYTNASKSPNKGLGTTNGVSHLEANFSKVAVFN  540

Query  540   LPDLNNLAITSFVRRNLEDKLATKGLSLQEANKLIKDFLSSNKELVGKALNFNKAVAEAK  599
             LP+LNNLAIT+++RR+LEDKL +KGLS QEANKLIKDFL+SNKE+VGK  NFNKAVAEAK
Sbjct  541   LPNLNNLAITNYIRRDLEDKLWAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAVAEAK  600

Query  600   NTGNYDEVKRAQKDLEKSLRRREHLEKNVAKNLESKSGNKNKMEAKAQANSQKDEIFALI  659
             NTGNYDEVK+AQKDLEKSLR+REHLEK+VAK+LES+++NKN+MEAKAQANSQKD IFALI
Sbjct  601   NTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKIFALI  660

Query  660   NKEANRDARAIAYAQNLKGIKRELSDKLENVNKNLKDFSESFDEFKNGKNKDFSKAEETL  719
             ++EA+++AR  ++  NLKG++ ELSDKLEN+NKNLKDF+ SFDE+K+GKN+DFSKAEETL
Sbjct  661   SQEASKEARVATFDPNLKGVRSELSDKLENINKNLKDFGKSFDELKSGKNNDFSKAEETL  720

Query  720   KALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSVKDVIINQK  779
             KALK+SVKDLGINPEWISK+ENLNAALN+FKNGKNKDFSKVTQAKSDLENS+KDVIINQK
Sbjct  721   KALKDSVKDLGINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVIINQK  780

Query  780   VTDKVDNLSSAVSVAKATGDFSRVNQALADLKNFSKEQLAQQAQKNEDFNTGKNSALYQS  839
             +TDKVDNL+ AVS  K TGDFS+V+QALA+LKN+S             ++ GKNS L +S
Sbjct  781   ITDKVDNLNQAVSEIKLTGDFSKVEQALAELKNLS-------------LDLGKNSDLQKS  827

Query  840   VKngvngtlvgnglSKAEATTLSKNFSDIKKElnak--lgnfnnnnnnglknEPIYAKVN  897
             VKNGVNGTLV+NGLSK+EATTL+KNFSDI+KELN K    + NNNN    + EPIYA+VN
Sbjct  828   VKNGVNGTLVSNGLSKTEATTLTKNFSDIRKELNEKLFGNSNNNNNGLKNNTEPIYAQVN  887

Query  898   KKKTEQAASPEEPIYAQVAKKVNAKIDRLNQIASGLGGVGQAVGFPLKRHDKVDDLSKVG  957
             KKKT QA+SPEEPIYAQVAKKV+AKID+LN+ +S++    + +         V+++S  G
Sbjct  888   KKKTGQATSPEEPIYAQVAKKVSAKIDQLNEATSAINRKIDRINKIASAGKGVGGFSGAG  947

Query  958   LSASPEPIYATID---DLGGPFPLKRHSKVDDLGKVGLSRNQELAQKIDNLNQAVSEAKA  1014
              SASPEPIYATID      + FPL+R + V+DL+KVGLSR+QEL+++I++L+QAVSEAK+
Sbjct  948   RSASPEPIYATIDFDEANQAGFPLRRSAAVNDLSKVGLSREQELTRRIGDLSQAVSEAKT  1007

Query  1015  GFFGNLEQTIDNLKDSAKNNPVNLWAESAKKVPASLSAKLDNYATNSHTRINSNIKNGAI  1074
             G FGNLEQ ID+LKDS+K+N+++LW ESAK+VP+SL AKLDNYATNSHTRINSN+++G+I
Sbjct  1008  GHFGNLEQKIDELKDSTKKNALKLWVESAKQVPTSLQAKLDNYATNSHTRINSNVQSGTI  1067

Query  1075  NEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFSTKLN  1134
             NEKATGMLTQKNPEWLKLVNDKIVAHNVGS PLS YDKIGFNQKNMKDYSDSFKFSTKLN
Sbjct  1068  NEKATGMLTQKNPEWLKLVNDKIVAHNVGSAPLSAYDKIGFNQKNMKDYSDSFKFSTKLN  1127

Query  1135  NAAKDIKSGFTQFLTNAFSTGYYCLAGENAEHGIKNVNTKGGFQKS  1180
             NA KDIKS+F QFLTN+FSTG Y L   N EHG+KN NTKGGFQKS
Sbjct  1128  NAVKDIKSSFVQFLTNTFSTGSYSLMKANVEHGVKNTNTKGGFQKS  1173

21) cagA in NC_011498


> NC_017366_P1|24|G24|385215791|YP_005775747.1|Helicobacter_pylori_F32|+|32443..35964|cagA|HPF32_0523|cag 
pathogenicity island 
protein
Length=1173

 Score = 1413 bits (5363),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 920/1220 (76%), Positives = 1069/1220 (88%), Gaps = 53/1220 (4%)

Query  1     MTNETINQQPQTE-AAFNPQQFINNLQVAFLKVNNAVASYDPDQKPIVDKNDRDNRQAFD  59
             MTNETI+Q    + ++F PQ+FINNLQVAF+KV+NAVAS+DPDQKPIVDKND+DNRQAF+
Sbjct  1     MTNETIDQTTTPDQTGFVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDKDNRQAFE  60

Query  60    GISQLKEEYSNKAIKNPTKKNQYFSDFINKSNDLINKDNLIDVESSTKSFQKFGDQRYQI  119
              ISQL+EEY+NKAIKNP+KKNQYFSDFINKSNDLINKDNLI V+SS  SF+KFGDQRYQI
Sbjct  61    KISQLREEYANKAIKNPAKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQRYQI  120

Query  120   FTSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQSFAGIIIGNQIRTD  179
             FTSWVS Q+DPSKINT+ IRNFMEN+IQPPI+DDKEKAEFL+SAKQSFAGIIIGNQIR+D
Sbjct  121   FTSWVSLQKDPSKINTQQIRNFMENVIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSD  180

Query  180   QKFMGVFDESLKERQEAEKNGEPTGGDWLDIFLSFIFDKKQSSDVKEAINQEPVPHVQPD  239
             +KFMGVFDESLK RQEAEKN+EP+GGDWLDIFLSF+F+KKQSSD+KE++NQEP P+ + +
Sbjct  181   EKFMGVFDESLKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPDFEQN  240

Query  240   IATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNTL  299
             +ATTTTDIQGLPPEARDLLDERGNF KFTLGD+EMLDVEGVAD DPNYKFNQLLIHNN+L
Sbjct  241   LATTTTDIQGLPPEARDLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIHNNAL  300

Query  300   SSVLMGSHDGIEPEKVSLLYAGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKNGSGL  359
             SS+LMGSH  IEPEKVSLLY++NGG  A+HDWNATVGYK+QQGNNVAT+IN H++NGSGL
Sbjct  301   SSMLMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLNNGSGL  360

Query  360   VIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIRNKIDFMELLAQNNAKLDNLSEKEKE  419
             +IAG E GI+NPSFYLYKEDQLTG ++ALSQEEI+NK+DFME+LAQNNAKLDNLSEKEKE
Sbjct  361   IIAGNEDGIKNPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSEKEKE  420

Query  420   KFQNEIKDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGKKADK  479
             KFQ EI +FQKD KAYLDALGND+IAFVSKKD KH AL+TEFGNG+LSYTLKDYGKK DK
Sbjct  421   KFQTEIENFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGELSYTLKDYGKKQDK  480

Query  480   ALDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFDKVAVFN  539
             ALD E + TLQGSLK DGVMFV+YSNFKYTNASK+PNKG+G TNGVSHLEA F KVAVFN
Sbjct  481   ALDGETKTTLQGSLKYDGVMFVNYSNFKYTNASKSPNKGLGTTNGVSHLEANFSKVAVFN  540

Query  540   LPDLNNLAITSFVRRNLEDKLVTKGLSIQEANKLIKDFLNSNKELVGKALNFNKAVADAK  599
             LP+LNNLAIT+++RR+LEDKL +KGLS QEANKLIKDFLNSNKE+VGK  NFNKAVA+AK
Sbjct  541   LPNLNNLAITNYIRRDLEDKLWAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAVAEAK  600

Query  600   NTGNYDEVKKAQKDLEKSLKKREHLEKEVAKNLESKSGNKNKMEAKSQANSQKDEIFALI  659
             NTGNYDEVKKAQKDLEKSL+KREHLEKEVAK+LES+++NKN+MEAK+QANSQKD IFALI
Sbjct  601   NTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKIFALI  660

Query  660   NKEANRDARAIAYAQNLKGIKMELSDKLENVNKNLKDFSKSFDEFKNGKNKDFSKAEETL  719
             ++EA+++AR  ++  NLKG++ ELSDKLEN+NKNLKDF+KSFDE+K+GKN+DFSKAEETL
Sbjct  661   SQEASKEARVATFDPNLKGVRSELSDKLENINKNLKDFGKSFDELKSGKNNDFSKAEETL  720

Query  720   KALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVAQAKSDLENSVKDVIINQK  779
             KALK+SVKDLGINPEWISK+ENLNAALN+FKNGKNKDFSKV+QAKSDLENS+KDVIINQK
Sbjct  721   KALKDSVKDLGINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVIINQK  780

Query  780   ITDKVDNLNQAVSVAKATGDFSRVEQALADLKNFSKEQLAQQAQKNEDFNTGKNSALYQS  839
             ITDKVDNLNQAVS  K TGDFS+VEQALA+LKN+S             ++ GKNS L +S
Sbjct  781   ITDKVDNLNQAVSEIKLTGDFSKVEQALAELKNLS-------------LDLGKNSDLQKS  827

Query  840   VKngvngtlvgnglSKAEATTLSKNFSDIKKElnak--lgnfnnnnnnglknEPIYAKVN  897
             VKNGVNGTLV+NGLSK+EATTL+KNFSDI+KELN K    + NNNN    + EPIYA+VN
Sbjct  828   VKNGVNGTLVSNGLSKTEATTLTKNFSDIRKELNEKLFGNSNNNNNGLKNNTEPIYAQVN  887

Query  898   KKKTGQAASHEEPIYAQVAKKVNAKIDRLNQIASGLGGVGQAAGFPLKKHDKVEDLSKVG  957
             KKKTGQA+S EEPIYAQVAKKV+AKID+LN+ +S++           +K D+++ ++  G
Sbjct  888   KKKTGQATSPEEPIYAQVAKKVSAKIDQLNEATSAIN----------RKIDRINKIASAG  937

Query  958   LSASPEPIYATIDDLGGPFPLKKHDKVEDLSKVGLSASPEPIYATID---DLGGPFPLKK  1014
              +                        V ++S  G SASPEPIYATID      + FPL++
Sbjct  938   KG------------------------VGGFSGAGRSASPEPIYATIDFDEANQAGFPLRR  973

Query  1015  HDKVEDLSKVGLSRNQKLAQKIDNLNQAVSEAKAGFFGNLEQTIDKLKDSTKYNPVNLWV  1074
                V+DLSKVGLSR+Q L+++I++L+QAVSEAK+G FGNLEQ ID LKDSTK N+++LWV
Sbjct  974   SAAVNDLSKVGLSREQELTRRIGDLSQAVSEAKTGHFGNLEQKIDELKDSTKKNALKLWV  1033

Query  1075  ESAKKVPASLSAKLDNYATNSHTRINSNIKNGAINEKATGMLAQKNPEWLKLVNDKIVAH  1134
             ESAK+VP+SL AKLDNYATNSHTRINSN+++G+INEKATGML+QKNPEWLKLVNDKIVAH
Sbjct  1034  ESAKQVPTSLQAKLDNYATNSHTRINSNVQSGTINEKATGMLTQKNPEWLKLVNDKIVAH  1093

Query  1135  NVGSVPLLEYDKIGFNQKNMKDYSDSFKFSTNLNNAVKDIKSGFTQFLANAFSTGYYCLA  1194
             NVGS PL  YDKIGFNQKNMKDYSDSFKFST+LNNAVKDIKS+F QFL+N+FSTG Y L 
Sbjct  1094  NVGSAPLSAYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDIKSSFVQFLTNTFSTGSYSLM  1153

Query  1195  RENAEHGIKNVNTKGGFQKS  1214
             + N EHG+KN NTKGGFQKS
Sbjct  1154  KANVEHGVKNTNTKGGFQKS  1173

22) HPPC_02715 in NC_014555


> NC_017366_P1|24|G24|385215791|YP_005775747.1|Helicobacter_pylori_F32|+|32443..35964|cagA|HPF32_0523|cag 
pathogenicity island 
protein
Length=1173

 Score = 1412 bits (5358),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 930/1205 (78%), Positives = 1075/1205 (90%), Gaps = 37/1205 (3%)

Query  1     MTNETIDQQPQTG-AAFNPQQFINNLQVAFLKLDNAVASFDPDQKPIVDKNDRDNRQAFD  59
             MTNETIDQ    + ++F PQ+FINNLQVAF+K+DNAVASFDPDQKPIVDKND+DNRQAF+
Sbjct  1     MTNETIDQTTTPDQTGFVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDKDNRQAFE  60

Query  60    GISQLREEYSNKAIKNPTKKNQYFSDFINKSNDLINKDNLIDVESSTKSFQKFGDQRYRI  119
              ISQLREEY+NKAIKNP+KKNQYFSDFINKSNDLINKDNLI V+SS  SF+KFGDQRY+I
Sbjct  61    KISQLREEYANKAIKNPAKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQRYQI  120

Query  120   FTSWVSHQNDPSKINTRSIRNFMENIIQPPIHDDKEKAEFLKSAKQSFAGIIIGNQIRTD  179
             FTSWVS Q+DPSKINT+ IRNFMEN+IQPPI DDKEKAEFL+SAKQSFAGIIIGNQIR+D
Sbjct  121   FTSWVSLQKDPSKINTQQIRNFMENVIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSD  180

Query  180   QKFMGVFDESLKERQEAEKNGEPTGGDWLDIFLSFIFNKKQSSDVKEAINQEPVPHVQPD  239
             +KFMGVFDESLK RQEAEKN+EP+GGDWLDIFLSF+FNKKQSSD+KE++NQEP P+ + +
Sbjct  181   EKFMGVFDESLKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPDFEQN  240

Query  240   IATSTTHIQGLPPESRDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNAL  299
             +AT+TT+IQGLPPE+RDLLDERGNF KFTLGD+EMLDVEGVAD DPNYKFNQLLIHNNAL
Sbjct  241   LATTTTDIQGLPPEARDLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIHNNAL  300

Query  300   SSVLMGSHNGIEPEKVSLLYAGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKNGSGL  359
             SS+LMGSH+ IEPEKVSLLY++NGG  A+HDWNATVGYK+QQGNNVAT+IN H++NGSGL
Sbjct  301   SSMLMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLNNGSGL  360

Query  360   VIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKVDFMEFLAQNNAKLDNLSEKEKE  419
             +IAG E GI+NPSFYLYKEDQLTG ++ALSQEEIQNKVDFMEFLAQNNAKLDNLSEKEKE
Sbjct  361   IIAGNEDGIKNPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSEKEKE  420

Query  420   KFRTEIENFQKNPKAYLDALGNDRIAFVSKKDPKHSALITEFGKGDLSYTLKDYGKKADK  479
             KF+TEIENFQK+ KAYLDALGND+IAFVSKKDPKH AL+TEFG+G+LSYTLKDYGKK DK
Sbjct  421   KFQTEIENFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGELSYTLKDYGKKQDK  480

Query  480   ALDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLDAGFSKVAVFN  539
             ALD E + TLQGSLK DGVMFV+YSNFKYTNASK+PNKG+G TNGVSHL+A FSKVAVFN
Sbjct  481   ALDGETKTTLQGSLKYDGVMFVNYSNFKYTNASKSPNKGLGTTNGVSHLEANFSKVAVFN  540

Query  540   LPDLNNLAITSFVRRNLEDKLTAKGLSLQEANKLIKDFLSSNKELVGKALNFNKAVAEAK  599
             LP+LNNLAIT+++RR+LEDKL AKGLS QEANKLIKDFL+SNKE+VGK  NFNKAVAEAK
Sbjct  541   LPNLNNLAITNYIRRDLEDKLWAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAVAEAK  600

Query  600   NTGNYDEVKKAQKDLEKSlrkrehlekevekklesksGNKNKMEAKSQANSQKDEIFALI  659
             NTGNYDEVKKAQKDLEKSLRKREHLEKEV KKLES+++NKN+MEAK+QANSQKD IFALI
Sbjct  601   NTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKIFALI  660

Query  660   NKEANRDARAIAYSQNLKGIKRELSDKLESINKDLKDFSKSFDALKSGKNKDFSNAEETL  719
             ++EA+++AR  ++  NLKG++ ELSDKLE+INK+LKDF+KSFD LKSGKN+DFS+AEETL
Sbjct  661   SQEASKEARVATFDPNLKGVRSELSDKLENINKNLKDFGKSFDELKSGKNNDFSKAEETL  720

Query  720   KALKSSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSVKDVIINQK  779
             KALK SVKDLGINPEWISK+ENLNAALN+FKNGKNKDFSKVTQAKSDLENS+KDVIINQK
Sbjct  721   KALKDSVKDLGINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVIINQK  780

Query  780   VTDKVDDLNQAVSVAKATGDFSRVEQALADLKNFSKEQLVQQAQKNESFNVGKKSEIYQS  839
             +TDKVD+LNQAVS  K TGDFS+VEQALA+LKN+             S+++GK+S++ +S
Sbjct  781   ITDKVDNLNQAVSEIKLTGDFSKVEQALAELKNL-------------SLDLGKNSDLQKS  827

Query  840   VKngvngtlvgnglSQAEATTLSKNFSDIKKELNAKLFG-nnnnnnnnGLKNEPIYAKVN  898
             VKNGVNGTLV+NGLS++EATTL+KNFSDI+KELN KLFG +NNNNN    + EPIYA+VN
Sbjct  828   VKNGVNGTLVSNGLSKTEATTLTKNFSDIRKELNEKLFGNSNNNNNGLKNNTEPIYAQVN  887

Query  899   KKKTGQVASPEEPIYAKVNKKKTGQVASPEEPIYAQVAKKVNAKIDRLNQIASGLGGVGQ  958
             KKKTGQ +SPEEPIYA+V KK ++++   +E+     +  +N KIDR+N+IAS+  GVG 
Sbjct  888   KKKTGQATSPEEPIYAQVAKKVSAKIDQLNEA-----TSAINRKIDRINKIASAGKGVG-  941

Query  959   AAGFPLKRHDKVDDLSKVGRSVSPEPIYATID---DLGGPFPLKRHDKVDDLSKVGLSRE  1015
               GF           S  GRS SPEPIYATID      + FPL+R   V+DLSKVGLSRE
Sbjct  942   --GF-----------SGAGRSASPEPIYATIDFDEANQAGFPLRRSAAVNDLSKVGLSRE  988

Query  1016  QKLAQKIDNLNQAVSEAKAGFFGNLEQTIDKLKDSTKNNTVNLWAESAKKVPASLSAKLD  1075
             Q L+++I++L+QAVSEAK+G FGNLEQ ID LKDSTK+N+++LW ESAK+VP+SL AKLD
Sbjct  989   QELTRRIGDLSQAVSEAKTGHFGNLEQKIDELKDSTKKNALKLWVESAKQVPTSLQAKLD  1048

Query  1076  NYATNSHTRINSNIHNGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGF  1135
             NYATNSHTRINSN+++G+INEKATGMLTQKNPEWLKLVNDKIVAHNVGS PLS YDKIGF
Sbjct  1049  NYATNSHTRINSNVQSGTINEKATGMLTQKNPEWLKLVNDKIVAHNVGSAPLSAYDKIGF  1108

Query  1136  NQKNMKDYSDSFKFSTKLNNAVKDVKSGFTQFLANAFSTGYYCLARENAEHGIKNVNTKG  1195
             NQKNMKDYSDSFKFSTKLNNAVKD+KS+F QFL+N+FSTG Y L + N EHG+KN NTKG
Sbjct  1109  NQKNMKDYSDSFKFSTKLNNAVKDIKSSFVQFLTNTFSTGSYSLMKANVEHGVKNTNTKG  1168

Query  1196  GFQKS  1200
             GFQKS
Sbjct  1169  GFQKS  1173

23) C694_02825 in NC_018939


> NC_017366_P1|24|G24|385215791|YP_005775747.1|Helicobacter_pylori_F32|+|32443..35964|cagA|HPF32_0523|cag 
pathogenicity island 
protein
Length=1173

 Score = 1409 bits (5347),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 930/1191 (79%), Positives = 1070/1191 (90%), Gaps = 23/1191 (1%)

Query  1     MTNETIDQTRTPDQTQSQTAFDPQQFINNLQVAFIKVDNVVASFDPDQKPIVDKNDRDNR  60
             MTNETIDQT TPDQT    +F PQ+FINNLQVAFIKVDN VASFDPDQKPIVDKND+DNR
Sbjct  1     MTNETIDQTTTPDQT----GFVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDKDNR  56

Query  61    QAFDGISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNLIDVESSTKSFQKFGDQ  120
             QAF+ ISQLREEY+NKAIKNP+KKNQYFSDFI+KSNDLINKDNLI V+SS  SF+KFGDQ
Sbjct  57    QAFEKISQLREEYANKAIKNPAKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQ  116

Query  121   RYQIFTSWVSHQKDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQSFAGIIIGNQ  180
             RYQIFTSWVS QKDPSKINT+ IRNFMEN+IQPPI+DDKEKAEFL+SAKQSFAGIIIGNQ
Sbjct  117   RYQIFTSWVSLQKDPSKINTQQIRNFMENVIQPPISDDKEKAEFLRSAKQSFAGIIIGNQ  176

Query  181   IRTDQKFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSFIFNKKQSSDVKEAINQEPVPH  240
             IR+D+KFMGVFDESLK RQEAEKN+ P+GGDWLDIFLSF+FNKKQSSD+KE++NQEP P+
Sbjct  177   IRSDEKFMGVFDESLKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPD  236

Query  241   VQPDIATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIH  300
              + ++ATTTTDIQGLPPEARDLLDERGNF KFTLGD+EMLDVEGVAD DPNYKFNQLLIH
Sbjct  237   FEQNLATTTTDIQGLPPEARDLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIH  296

Query  301   NNALSSVLMGSHNGIEPEKVSLLYAGNGGFGDKHDWNATVGYKDQQGNNVATLINVHMKN  360
             NNALSS+LMGSH+ IEPEKVSLLY++NGG   +HDWNATVGYK+QQGNNVATLIN H++N
Sbjct  297   NNALSSMLMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLNN  356

Query  361   GSGLVIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIRNKVDFMEFLAQNNTKLDNLSE  420
             GSGL+IAG E GI+NPSFYLYKEDQLTG ++ALSQEEI+NKVDFMEFLAQNN+KLDNLSE
Sbjct  357   GSGLIIAGNEDGIKNPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSE  416

Query  421   KEKEKFQNEIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFNNGDLSYTLKDYGK  480
             KEKEKFQ EIE+FQKD KAYLDALGND+IAFVSKKD KH AL+TEF NG+LSYTLKDYGK
Sbjct  417   KEKEKFQTEIENFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGELSYTLKDYGK  476

Query  481   KADKALDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGATNGVSHLEAGFNKV  540
             K DKALD E + TLQGSLK DGVMFV+YSNFKYTNASK+PNKG+G+TNGVSHLEA F+KV
Sbjct  477   KQDKALDGETKTTLQGSLKYDGVMFVNYSNFKYTNASKSPNKGLGTTNGVSHLEANFSKV  536

Query  541   AVFNLPDLNNLAITSFVRRNLENKLTAKGLSLQEANKLIKDFLSSNKELAGKALNFNKAV  600
             AVFNLP+LNNLAIT+++RR+LE+KL AKGLS QEANKLIKDFL+SNKE+ GK  NFNKAV
Sbjct  537   AVFNLPNLNNLAITNYIRRDLEDKLWAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAV  596

Query  601   AEAKSTGNYDEVKKAQKDLEKSlrkrehlekevekklesksGNKNKMEAKAQANSQKDEI  660
             AEAK+TGNYDEVKKAQKDLEKSLRKREHLEKEV KKLES+++NKN+MEAKAQANSQKD I
Sbjct  597   AEAKNTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKI  656

Query  661   FALINKEANRDARAIAYTQNLKGIKRELSDKLEKISKDLKDFSKSFDEFKNGKNKDFSKA  720
             FALI++EA+++AR  ++  NLKG++ ELSDKLE+I+K+LKDF+KSFDE+K+GKN+DFSKA
Sbjct  657   FALISQEASKEARVATFDPNLKGVRSELSDKLENINKNLKDFGKSFDELKSGKNNDFSKA  716

Query  721   EETLKALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSVKDVI  780
             EETLKALK+SVKDLGINPEWISK+ENLNAALN+FKNGKNKDFSKVTQAKSDLENS+KDVI
Sbjct  717   EETLKALKDSVKDLGINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVI  776

Query  781   INQKVTDKVDNLNQAVSVAKAMGDFSRVEQVLADLKNFSKEQLAQQAQKNEDFNTGKNSE  840
             INQK+TDKVDNLNQAVS  K  GDFS+VEQ LA+LKN+S             ++ GKNS+
Sbjct  777   INQKITDKVDNLNQAVSEIKLTGDFSKVEQALAELKNLS-------------LDLGKNSD  823

Query  841   LYQSVKNSVNKTLVGNGLSGIEATALAKNFSDIkkelnekf-knfnnnnnglknSTEPIY  899
             L +SVKN+VN TLV+NGLS  EAT+L+KNFSDI+KELNEK+  N NNNNNGLKN+TEPIY
Sbjct  824   LQKSVKNGVNGTLVSNGLSKTEATTLTKNFSDIRKELNEKLFGNSNNNNNGLKNNTEPIY  883

Query  900   AKVNKKKTGQVASPEEPIYTQVAKKVNAKIDRLNQIASGLG-GVGQAAGFPLKRHDKVDD  958
             A+VNKKKTGQ +SPEEPIY+QVAKKV+AKID+LN+ +S++   +++   ++      V++
Sbjct  884   AQVNKKKTGQATSPEEPIYAQVAKKVSAKIDQLNEATSAINRKIDRINKIA-SAGKGVGG  942

Query  959   LSKVGLSASPEPIYATID---DLGGPFPLKRHDKVDDLSKVGRSRNQELAQKIDNLNQAV  1015
             +S  G SASPEPIYATID      + FPL+R   V+DLSKVG SR+QEL+++I++L+QAV
Sbjct  943   FSGAGRSASPEPIYATIDFDEANQAGFPLRRSAAVNDLSKVGLSREQELTRRIGDLSQAV  1002

Query  1016  SEAKAGFFGNLEQTIDKLKDSTKKNVMNLYVESAKKVPASLSAKLDNYAINSHTRINSNI  1075
             SEAK+G FGNLEQ ID LKDSTKKN ++L VESAK+VP+SL AKLDNYA NSHTRINSN+
Sbjct  1003  SEAKTGHFGNLEQKIDELKDSTKKNALKLWVESAKQVPTSLQAKLDNYATNSHTRINSNV  1062

Query  1076  QNGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGSVSLSEYDKIGFNQKNMKDYSDSFKF  1135
             Q+G+INEKATGMLTQKNPEWLKLVNDKIVAHNVGS +LS YDKIGFNQKNMKDYSDSFKF
Sbjct  1063  QSGTINEKATGMLTQKNPEWLKLVNDKIVAHNVGSAPLSAYDKIGFNQKNMKDYSDSFKF  1122

Query  1136  STKLNNAVKDIKSGFTHFLANAFSTGYYCLARENAEHGIKNVNTKGGFQKS  1186
             STKLNNAVKDIKS+F +FL+N+FSTG Y L + N EHG+KN NTKGGFQKS
Sbjct  1123  STKLNNAVKDIKSSFVQFLTNTFSTGSYSLMKANVEHGVKNTNTKGGFQKS  1173

24) HP0547 in NC_000915


> NC_017366_P1|24|G24|385215791|YP_005775747.1|Helicobacter_pylori_F32|+|32443..35964|cagA|HPF32_0523|cag 
pathogenicity island 
protein
Length=1173

 Score = 1409 bits (5347),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 930/1191 (79%), Positives = 1070/1191 (90%), Gaps = 23/1191 (1%)

Query  1     MTNETIDQTRTPDQTQSQTAFDPQQFINNLQVAFIKVDNVVASFDPDQKPIVDKNDRDNR  60
             MTNETIDQT TPDQT    +F PQ+FINNLQVAFIKVDN VASFDPDQKPIVDKND+DNR
Sbjct  1     MTNETIDQTTTPDQT----GFVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDKDNR  56

Query  61    QAFDGISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNLIDVESSTKSFQKFGDQ  120
             QAF+ ISQLREEY+NKAIKNP+KKNQYFSDFI+KSNDLINKDNLI V+SS  SF+KFGDQ
Sbjct  57    QAFEKISQLREEYANKAIKNPAKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQ  116

Query  121   RYQIFTSWVSHQKDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQSFAGIIIGNQ  180
             RYQIFTSWVS QKDPSKINT+ IRNFMEN+IQPPI+DDKEKAEFL+SAKQSFAGIIIGNQ
Sbjct  117   RYQIFTSWVSLQKDPSKINTQQIRNFMENVIQPPISDDKEKAEFLRSAKQSFAGIIIGNQ  176

Query  181   IRTDQKFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSFIFNKKQSSDVKEAINQEPVPH  240
             IR+D+KFMGVFDESLK RQEAEKN+ P+GGDWLDIFLSF+FNKKQSSD+KE++NQEP P+
Sbjct  177   IRSDEKFMGVFDESLKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPD  236

Query  241   VQPDIATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIH  300
              + ++ATTTTDIQGLPPEARDLLDERGNF KFTLGD+EMLDVEGVAD DPNYKFNQLLIH
Sbjct  237   FEQNLATTTTDIQGLPPEARDLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIH  296

Query  301   NNALSSVLMGSHNGIEPEKVSLLYAGNGGFGDKHDWNATVGYKDQQGNNVATLINVHMKN  360
             NNALSS+LMGSH+ IEPEKVSLLY++NGG   +HDWNATVGYK+QQGNNVATLIN H++N
Sbjct  297   NNALSSMLMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLNN  356

Query  361   GSGLVIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIRNKVDFMEFLAQNNTKLDNLSE  420
             GSGL+IAG E GI+NPSFYLYKEDQLTG ++ALSQEEI+NKVDFMEFLAQNN+KLDNLSE
Sbjct  357   GSGLIIAGNEDGIKNPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSE  416

Query  421   KEKEKFQNEIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFNNGDLSYTLKDYGK  480
             KEKEKFQ EIE+FQKD KAYLDALGND+IAFVSKKD KH AL+TEF NG+LSYTLKDYGK
Sbjct  417   KEKEKFQTEIENFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGELSYTLKDYGK  476

Query  481   KADKALDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGATNGVSHLEAGFNKV  540
             K DKALD E + TLQGSLK DGVMFV+YSNFKYTNASK+PNKG+G+TNGVSHLEA F+KV
Sbjct  477   KQDKALDGETKTTLQGSLKYDGVMFVNYSNFKYTNASKSPNKGLGTTNGVSHLEANFSKV  536

Query  541   AVFNLPDLNNLAITSFVRRNLENKLTAKGLSLQEANKLIKDFLSSNKELAGKALNFNKAV  600
             AVFNLP+LNNLAIT+++RR+LE+KL AKGLS QEANKLIKDFL+SNKE+ GK  NFNKAV
Sbjct  537   AVFNLPNLNNLAITNYIRRDLEDKLWAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAV  596

Query  601   AEAKSTGNYDEVKKAQKDLEKSlrkrehlekevekklesksGNKNKMEAKAQANSQKDEI  660
             AEAK+TGNYDEVKKAQKDLEKSLRKREHLEKEV KKLES+++NKN+MEAKAQANSQKD I
Sbjct  597   AEAKNTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKI  656

Query  661   FALINKEANRDARAIAYTQNLKGIKRELSDKLEKISKDLKDFSKSFDEFKNGKNKDFSKA  720
             FALI++EA+++AR  ++  NLKG++ ELSDKLE+I+K+LKDF+KSFDE+K+GKN+DFSKA
Sbjct  657   FALISQEASKEARVATFDPNLKGVRSELSDKLENINKNLKDFGKSFDELKSGKNNDFSKA  716

Query  721   EETLKALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSVKDVI  780
             EETLKALK+SVKDLGINPEWISK+ENLNAALN+FKNGKNKDFSKVTQAKSDLENS+KDVI
Sbjct  717   EETLKALKDSVKDLGINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVI  776

Query  781   INQKVTDKVDNLNQAVSVAKAMGDFSRVEQVLADLKNFSKEQLAQQAQKNEDFNTGKNSE  840
             INQK+TDKVDNLNQAVS  K  GDFS+VEQ LA+LKN+S             ++ GKNS+
Sbjct  777   INQKITDKVDNLNQAVSEIKLTGDFSKVEQALAELKNLS-------------LDLGKNSD  823

Query  841   LYQSVKNSVNKTLVGNGLSGIEATALAKNFSDIkkelnekf-knfnnnnnglknSTEPIY  899
             L +SVKN+VN TLV+NGLS  EAT+L+KNFSDI+KELNEK+  N NNNNNGLKN+TEPIY
Sbjct  824   LQKSVKNGVNGTLVSNGLSKTEATTLTKNFSDIRKELNEKLFGNSNNNNNGLKNNTEPIY  883

Query  900   AKVNKKKTGQVASPEEPIYTQVAKKVNAKIDRLNQIASGLG-GVGQAAGFPLKRHDKVDD  958
             A+VNKKKTGQ +SPEEPIY+QVAKKV+AKID+LN+ +S++   +++   ++      V++
Sbjct  884   AQVNKKKTGQATSPEEPIYAQVAKKVSAKIDQLNEATSAINRKIDRINKIA-SAGKGVGG  942

Query  959   LSKVGLSASPEPIYATID---DLGGPFPLKRHDKVDDLSKVGRSRNQELAQKIDNLNQAV  1015
             +S  G SASPEPIYATID      + FPL+R   V+DLSKVG SR+QEL+++I++L+QAV
Sbjct  943   FSGAGRSASPEPIYATIDFDEANQAGFPLRRSAAVNDLSKVGLSREQELTRRIGDLSQAV  1002

Query  1016  SEAKAGFFGNLEQTIDKLKDSTKKNVMNLYVESAKKVPASLSAKLDNYAINSHTRINSNI  1075
             SEAK+G FGNLEQ ID LKDSTKKN ++L VESAK+VP+SL AKLDNYA NSHTRINSN+
Sbjct  1003  SEAKTGHFGNLEQKIDELKDSTKKNALKLWVESAKQVPTSLQAKLDNYATNSHTRINSNV  1062

Query  1076  QNGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGSVSLSEYDKIGFNQKNMKDYSDSFKF  1135
             Q+G+INEKATGMLTQKNPEWLKLVNDKIVAHNVGS +LS YDKIGFNQKNMKDYSDSFKF
Sbjct  1063  QSGTINEKATGMLTQKNPEWLKLVNDKIVAHNVGSAPLSAYDKIGFNQKNMKDYSDSFKF  1122

Query  1136  STKLNNAVKDIKSGFTHFLANAFSTGYYCLARENAEHGIKNVNTKGGFQKS  1186
             STKLNNAVKDIKS+F +FL+N+FSTG Y L + N EHG+KN NTKGGFQKS
Sbjct  1123  STKLNNAVKDIKSSFVQFLTNTFSTGSYSLMKANVEHGVKNTNTKGGFQKS  1173

25) C695_02825 in NC_018937


> NC_017366_P1|24|G24|385215791|YP_005775747.1|Helicobacter_pylori_F32|+|32443..35964|cagA|HPF32_0523|cag 
pathogenicity island 
protein
Length=1173

 Score = 1409 bits (5347),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 930/1191 (79%), Positives = 1070/1191 (90%), Gaps = 23/1191 (1%)

Query  1     MTNETIDQTRTPDQTQSQTAFDPQQFINNLQVAFIKVDNVVASFDPDQKPIVDKNDRDNR  60
             MTNETIDQT TPDQT    +F PQ+FINNLQVAFIKVDN VASFDPDQKPIVDKND+DNR
Sbjct  1     MTNETIDQTTTPDQT----GFVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDKDNR  56

Query  61    QAFDGISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNLIDVESSTKSFQKFGDQ  120
             QAF+ ISQLREEY+NKAIKNP+KKNQYFSDFI+KSNDLINKDNLI V+SS  SF+KFGDQ
Sbjct  57    QAFEKISQLREEYANKAIKNPAKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQ  116

Query  121   RYQIFTSWVSHQKDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQSFAGIIIGNQ  180
             RYQIFTSWVS QKDPSKINT+ IRNFMEN+IQPPI+DDKEKAEFL+SAKQSFAGIIIGNQ
Sbjct  117   RYQIFTSWVSLQKDPSKINTQQIRNFMENVIQPPISDDKEKAEFLRSAKQSFAGIIIGNQ  176

Query  181   IRTDQKFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSFIFNKKQSSDVKEAINQEPVPH  240
             IR+D+KFMGVFDESLK RQEAEKN+ P+GGDWLDIFLSF+FNKKQSSD+KE++NQEP P+
Sbjct  177   IRSDEKFMGVFDESLKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPD  236

Query  241   VQPDIATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIH  300
              + ++ATTTTDIQGLPPEARDLLDERGNF KFTLGD+EMLDVEGVAD DPNYKFNQLLIH
Sbjct  237   FEQNLATTTTDIQGLPPEARDLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIH  296

Query  301   NNALSSVLMGSHNGIEPEKVSLLYAGNGGFGDKHDWNATVGYKDQQGNNVATLINVHMKN  360
             NNALSS+LMGSH+ IEPEKVSLLY++NGG   +HDWNATVGYK+QQGNNVATLIN H++N
Sbjct  297   NNALSSMLMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLNN  356

Query  361   GSGLVIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIRNKVDFMEFLAQNNTKLDNLSE  420
             GSGL+IAG E GI+NPSFYLYKEDQLTG ++ALSQEEI+NKVDFMEFLAQNN+KLDNLSE
Sbjct  357   GSGLIIAGNEDGIKNPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSE  416

Query  421   KEKEKFQNEIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFNNGDLSYTLKDYGK  480
             KEKEKFQ EIE+FQKD KAYLDALGND+IAFVSKKD KH AL+TEF NG+LSYTLKDYGK
Sbjct  417   KEKEKFQTEIENFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGELSYTLKDYGK  476

Query  481   KADKALDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGATNGVSHLEAGFNKV  540
             K DKALD E + TLQGSLK DGVMFV+YSNFKYTNASK+PNKG+G+TNGVSHLEA F+KV
Sbjct  477   KQDKALDGETKTTLQGSLKYDGVMFVNYSNFKYTNASKSPNKGLGTTNGVSHLEANFSKV  536

Query  541   AVFNLPDLNNLAITSFVRRNLENKLTAKGLSLQEANKLIKDFLSSNKELAGKALNFNKAV  600
             AVFNLP+LNNLAIT+++RR+LE+KL AKGLS QEANKLIKDFL+SNKE+ GK  NFNKAV
Sbjct  537   AVFNLPNLNNLAITNYIRRDLEDKLWAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAV  596

Query  601   AEAKSTGNYDEVKKAQKDLEKSlrkrehlekevekklesksGNKNKMEAKAQANSQKDEI  660
             AEAK+TGNYDEVKKAQKDLEKSLRKREHLEKEV KKLES+++NKN+MEAKAQANSQKD I
Sbjct  597   AEAKNTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKI  656

Query  661   FALINKEANRDARAIAYTQNLKGIKRELSDKLEKISKDLKDFSKSFDEFKNGKNKDFSKA  720
             FALI++EA+++AR  ++  NLKG++ ELSDKLE+I+K+LKDF+KSFDE+K+GKN+DFSKA
Sbjct  657   FALISQEASKEARVATFDPNLKGVRSELSDKLENINKNLKDFGKSFDELKSGKNNDFSKA  716

Query  721   EETLKALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSVKDVI  780
             EETLKALK+SVKDLGINPEWISK+ENLNAALN+FKNGKNKDFSKVTQAKSDLENS+KDVI
Sbjct  717   EETLKALKDSVKDLGINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVI  776

Query  781   INQKVTDKVDNLNQAVSVAKAMGDFSRVEQVLADLKNFSKEQLAQQAQKNEDFNTGKNSE  840
             INQK+TDKVDNLNQAVS  K  GDFS+VEQ LA+LKN+S             ++ GKNS+
Sbjct  777   INQKITDKVDNLNQAVSEIKLTGDFSKVEQALAELKNLS-------------LDLGKNSD  823

Query  841   LYQSVKNSVNKTLVGNGLSGIEATALAKNFSDIkkelnekf-knfnnnnnglknSTEPIY  899
             L +SVKN+VN TLV+NGLS  EAT+L+KNFSDI+KELNEK+  N NNNNNGLKN+TEPIY
Sbjct  824   LQKSVKNGVNGTLVSNGLSKTEATTLTKNFSDIRKELNEKLFGNSNNNNNGLKNNTEPIY  883

Query  900   AKVNKKKTGQVASPEEPIYTQVAKKVNAKIDRLNQIASGLG-GVGQAAGFPLKRHDKVDD  958
             A+VNKKKTGQ +SPEEPIY+QVAKKV+AKID+LN+ +S++   +++   ++      V++
Sbjct  884   AQVNKKKTGQATSPEEPIYAQVAKKVSAKIDQLNEATSAINRKIDRINKIA-SAGKGVGG  942

Query  959   LSKVGLSASPEPIYATID---DLGGPFPLKRHDKVDDLSKVGRSRNQELAQKIDNLNQAV  1015
             +S  G SASPEPIYATID      + FPL+R   V+DLSKVG SR+QEL+++I++L+QAV
Sbjct  943   FSGAGRSASPEPIYATIDFDEANQAGFPLRRSAAVNDLSKVGLSREQELTRRIGDLSQAV  1002

Query  1016  SEAKAGFFGNLEQTIDKLKDSTKKNVMNLYVESAKKVPASLSAKLDNYAINSHTRINSNI  1075
             SEAK+G FGNLEQ ID LKDSTKKN ++L VESAK+VP+SL AKLDNYA NSHTRINSN+
Sbjct  1003  SEAKTGHFGNLEQKIDELKDSTKKNALKLWVESAKQVPTSLQAKLDNYATNSHTRINSNV  1062

Query  1076  QNGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGSVSLSEYDKIGFNQKNMKDYSDSFKF  1135
             Q+G+INEKATGMLTQKNPEWLKLVNDKIVAHNVGS +LS YDKIGFNQKNMKDYSDSFKF
Sbjct  1063  QSGTINEKATGMLTQKNPEWLKLVNDKIVAHNVGSAPLSAYDKIGFNQKNMKDYSDSFKF  1122

Query  1136  STKLNNAVKDIKSGFTHFLANAFSTGYYCLARENAEHGIKNVNTKGGFQKS  1186
             STKLNNAVKDIKS+F +FL+N+FSTG Y L + N EHG+KN NTKGGFQKS
Sbjct  1123  STKLNNAVKDIKSSFVQFLTNTFSTGSYSLMKANVEHGVKNTNTKGGFQKS  1173

26) C730_02825 in NC_018938


> NC_017366_P1|24|G24|385215791|YP_005775747.1|Helicobacter_pylori_F32|+|32443..35964|cagA|HPF32_0523|cag 
pathogenicity island 
protein
Length=1173

 Score = 1409 bits (5347),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 930/1191 (79%), Positives = 1070/1191 (90%), Gaps = 23/1191 (1%)

Query  1     MTNETIDQTRTPDQTQSQTAFDPQQFINNLQVAFIKVDNVVASFDPDQKPIVDKNDRDNR  60
             MTNETIDQT TPDQT    +F PQ+FINNLQVAFIKVDN VASFDPDQKPIVDKND+DNR
Sbjct  1     MTNETIDQTTTPDQT----GFVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDKDNR  56

Query  61    QAFDGISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNLIDVESSTKSFQKFGDQ  120
             QAF+ ISQLREEY+NKAIKNP+KKNQYFSDFI+KSNDLINKDNLI V+SS  SF+KFGDQ
Sbjct  57    QAFEKISQLREEYANKAIKNPAKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQ  116

Query  121   RYQIFTSWVSHQKDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQSFAGIIIGNQ  180
             RYQIFTSWVS QKDPSKINT+ IRNFMEN+IQPPI+DDKEKAEFL+SAKQSFAGIIIGNQ
Sbjct  117   RYQIFTSWVSLQKDPSKINTQQIRNFMENVIQPPISDDKEKAEFLRSAKQSFAGIIIGNQ  176

Query  181   IRTDQKFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSFIFNKKQSSDVKEAINQEPVPH  240
             IR+D+KFMGVFDESLK RQEAEKN+ P+GGDWLDIFLSF+FNKKQSSD+KE++NQEP P+
Sbjct  177   IRSDEKFMGVFDESLKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPD  236

Query  241   VQPDIATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIH  300
              + ++ATTTTDIQGLPPEARDLLDERGNF KFTLGD+EMLDVEGVAD DPNYKFNQLLIH
Sbjct  237   FEQNLATTTTDIQGLPPEARDLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIH  296

Query  301   NNALSSVLMGSHNGIEPEKVSLLYAGNGGFGDKHDWNATVGYKDQQGNNVATLINVHMKN  360
             NNALSS+LMGSH+ IEPEKVSLLY++NGG   +HDWNATVGYK+QQGNNVATLIN H++N
Sbjct  297   NNALSSMLMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLNN  356

Query  361   GSGLVIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIRNKVDFMEFLAQNNTKLDNLSE  420
             GSGL+IAG E GI+NPSFYLYKEDQLTG ++ALSQEEI+NKVDFMEFLAQNN+KLDNLSE
Sbjct  357   GSGLIIAGNEDGIKNPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSE  416

Query  421   KEKEKFQNEIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFNNGDLSYTLKDYGK  480
             KEKEKFQ EIE+FQKD KAYLDALGND+IAFVSKKD KH AL+TEF NG+LSYTLKDYGK
Sbjct  417   KEKEKFQTEIENFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGELSYTLKDYGK  476

Query  481   KADKALDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGATNGVSHLEAGFNKV  540
             K DKALD E + TLQGSLK DGVMFV+YSNFKYTNASK+PNKG+G+TNGVSHLEA F+KV
Sbjct  477   KQDKALDGETKTTLQGSLKYDGVMFVNYSNFKYTNASKSPNKGLGTTNGVSHLEANFSKV  536

Query  541   AVFNLPDLNNLAITSFVRRNLENKLTAKGLSLQEANKLIKDFLSSNKELAGKALNFNKAV  600
             AVFNLP+LNNLAIT+++RR+LE+KL AKGLS QEANKLIKDFL+SNKE+ GK  NFNKAV
Sbjct  537   AVFNLPNLNNLAITNYIRRDLEDKLWAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAV  596

Query  601   AEAKSTGNYDEVKKAQKDLEKSlrkrehlekevekklesksGNKNKMEAKAQANSQKDEI  660
             AEAK+TGNYDEVKKAQKDLEKSLRKREHLEKEV KKLES+++NKN+MEAKAQANSQKD I
Sbjct  597   AEAKNTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKI  656

Query  661   FALINKEANRDARAIAYTQNLKGIKRELSDKLEKISKDLKDFSKSFDEFKNGKNKDFSKA  720
             FALI++EA+++AR  ++  NLKG++ ELSDKLE+I+K+LKDF+KSFDE+K+GKN+DFSKA
Sbjct  657   FALISQEASKEARVATFDPNLKGVRSELSDKLENINKNLKDFGKSFDELKSGKNNDFSKA  716

Query  721   EETLKALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSVKDVI  780
             EETLKALK+SVKDLGINPEWISK+ENLNAALN+FKNGKNKDFSKVTQAKSDLENS+KDVI
Sbjct  717   EETLKALKDSVKDLGINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVI  776

Query  781   INQKVTDKVDNLNQAVSVAKAMGDFSRVEQVLADLKNFSKEQLAQQAQKNEDFNTGKNSE  840
             INQK+TDKVDNLNQAVS  K  GDFS+VEQ LA+LKN+S             ++ GKNS+
Sbjct  777   INQKITDKVDNLNQAVSEIKLTGDFSKVEQALAELKNLS-------------LDLGKNSD  823

Query  841   LYQSVKNSVNKTLVGNGLSGIEATALAKNFSDIkkelnekf-knfnnnnnglknSTEPIY  899
             L +SVKN+VN TLV+NGLS  EAT+L+KNFSDI+KELNEK+  N NNNNNGLKN+TEPIY
Sbjct  824   LQKSVKNGVNGTLVSNGLSKTEATTLTKNFSDIRKELNEKLFGNSNNNNNGLKNNTEPIY  883

Query  900   AKVNKKKTGQVASPEEPIYTQVAKKVNAKIDRLNQIASGLG-GVGQAAGFPLKRHDKVDD  958
             A+VNKKKTGQ +SPEEPIY+QVAKKV+AKID+LN+ +S++   +++   ++      V++
Sbjct  884   AQVNKKKTGQATSPEEPIYAQVAKKVSAKIDQLNEATSAINRKIDRINKIA-SAGKGVGG  942

Query  959   LSKVGLSASPEPIYATID---DLGGPFPLKRHDKVDDLSKVGRSRNQELAQKIDNLNQAV  1015
             +S  G SASPEPIYATID      + FPL+R   V+DLSKVG SR+QEL+++I++L+QAV
Sbjct  943   FSGAGRSASPEPIYATIDFDEANQAGFPLRRSAAVNDLSKVGLSREQELTRRIGDLSQAV  1002

Query  1016  SEAKAGFFGNLEQTIDKLKDSTKKNVMNLYVESAKKVPASLSAKLDNYAINSHTRINSNI  1075
             SEAK+G FGNLEQ ID LKDSTKKN ++L VESAK+VP+SL AKLDNYA NSHTRINSN+
Sbjct  1003  SEAKTGHFGNLEQKIDELKDSTKKNALKLWVESAKQVPTSLQAKLDNYATNSHTRINSNV  1062

Query  1076  QNGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGSVSLSEYDKIGFNQKNMKDYSDSFKF  1135
             Q+G+INEKATGMLTQKNPEWLKLVNDKIVAHNVGS +LS YDKIGFNQKNMKDYSDSFKF
Sbjct  1063  QSGTINEKATGMLTQKNPEWLKLVNDKIVAHNVGSAPLSAYDKIGFNQKNMKDYSDSFKF  1122

Query  1136  STKLNNAVKDIKSGFTHFLANAFSTGYYCLARENAEHGIKNVNTKGGFQKS  1186
             STKLNNAVKDIKS+F +FL+N+FSTG Y L + N EHG+KN NTKGGFQKS
Sbjct  1123  STKLNNAVKDIKSSFVQFLTNTFSTGSYSLMKANVEHGVKNTNTKGGFQKS  1173

27) HPSH169_02815 in NC_017740


> NC_017366_P1|24|G24|385215791|YP_005775747.1|Helicobacter_pylori_F32|+|32443..35964|cagA|HPF32_0523|cag 
pathogenicity island 
protein
Length=1173

 Score = 1409 bits (5347),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 944/1199 (79%), Positives = 1074/1199 (90%), Gaps = 39/1199 (3%)

Query  1     MANETIDQTKNPDQTPSQTAFDSQQFINNLQVAFIKVDSAVASFDPDQKPIVDKNDRDNR  60
             M+NETIDQT  PDQT    +F +Q+FINNLQVAFIKVD+AVASFDPDQKPIVDKND+DNR
Sbjct  1     MTNETIDQTTTPDQT----GFVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDKDNR  56

Query  61    QAFNGISQLREEYANKAIKNPTKKNQYFSDFISKSNDLINKDNLIDTDSSTKSFQKFGTE  120
             QAF+ ISQLREEYANKAIKNP+KKNQYFSDFI+KSNDLINKDNLI  DSS  SF+KFG +
Sbjct  57    QAFEKISQLREEYANKAIKNPAKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQ  116

Query  121   RYQIFMNWVSHQKDPSKINTQKIRNFMENIVQPPISDDKEKAEFLRSAKQSFAGIIIGNQ  180
             RYQIF +WVS QKDPSKINTQ+IRNFMEN++QPPISDDKEKAEFLRSAKQSFAGIIIGNQ
Sbjct  117   RYQIFTSWVSLQKDPSKINTQQIRNFMENVIQPPISDDKEKAEFLRSAKQSFAGIIIGNQ  176

Query  181   IRSDEKFMGVFEESLKEKQEAEKKGEPSG-DWLDIFLSFVFNKKQSSDLKETLNQESRPN  239
             IRSDEKFMGVF+ESLK +QEAEK++EP+G DWLDIFLSFVFNKKQSSDLKETLNQE+RP+
Sbjct  177   IRSDEKFMGVFDESLKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPD  236

Query  240   VEQNIATTPTPIQGLPLEARDLLDERGDFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIH  299
              EQN+ATT T IQGLP EARDLLDERG+F KFTLGD+EMLDVEGVAD DPNYKFNQLLIH
Sbjct  237   FEQNLATTTTDIQGLPPEARDLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIH  296

Query  300   NNALSSMLMGSHGNIKPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLKN  359
             NNALSSMLMGSH+NI PEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHL+N
Sbjct  297   NNALSSMLMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLNN  356

Query  360   GSGLIIAGNENGINNPSFYLYKKDQLTGLEQALSQEEIQNKLGFMELLAQNNAKLDNLSK  419
             GSGLIIAGNE+GI+NPSFYLYK DQLTGL QALSQEEIQNK++FME+LAQNNAKLDNLS 
Sbjct  357   GSGLIIAGNEDGIKNPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSE  416

Query  420   EEKEKFQTEIGNFQKDPKAYLDSLGNDRIAFVSKKDNKHLALVTEFGNGELSYTLKDYGK  479
              EKEKFQTEI NFQKD KAYLD+LGND+IAFVSKKD KHLALVTEFGNGELSYTLKDYGK
Sbjct  417   KEKEKFQTEIENFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGELSYTLKDYGK  476

Query  480   RQDRALDREIKTTLQGNLKDDGVMFVNYSNFKYTNASKSPNEGIGATNGVSHLEANFSKV  539
             +QD+ALD E KTTLQG+LK DGVMFVNYSNFKYTNASKSPN G+G+TNGVSHLEANFSKV
Sbjct  477   KQDKALDGETKTTLQGSLKYDGVMFVNYSNFKYTNASKSPNKGLGTTNGVSHLEANFSKV  536

Query  540   AVFNLPKLNGLAVSSFARRNLENKLIAKGFPPKEASKIIKDFLNSNKELLGKALNFNKAV  599
             AVFNLP+LN LA++++ RR+LE+KL AKG++P+EA+K+IKDFLNSNKE++GK  NFNKAV
Sbjct  537   AVFNLPNLNNLAITNYIRRDLEDKLWAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAV  596

Query  600   AEAKNTGNYGGVKKAQKDLEKSIRKRERLEKEITKQFESKSGNKNKMEAKAQANSQKDEI  659
             AEAKNTGNY+ VKKAQKDLEKS+RKRE+LEKE++K++ES+++NKN+MEAKAQANSQKD I
Sbjct  597   AEAKNTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKI  656

Query  660   FKLINEGAYKEARIIAYAQNLKNIKRELSDKIENINKNLKDFGESFDALKSGKNKDFSKA  719
             F LI++ A KEAR+ ++  NLK ++ ELSDK+ENINKNLKDFG SFD LKSGKN+DFSKA
Sbjct  657   FALISQEASKEARVATFDPNLKGVRSELSDKLENINKNLKDFGKSFDELKSGKNNDFSKA  716

Query  720   EETLKALESSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSIKDVI  779
             EETLKAL  SVKDLGINPEWISK+ENLNAALN+FKNGKNKDFSKVTQAKSDLENSIKDVI
Sbjct  717   EETLKALKDSVKDLGINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVI  776

Query  780   INQEITDKVDNLNQAVSIAKATGDFSGLDQALAELKNF--NVGKNSDLQKSvkngvngtl  837
             INQ ITDKVDNLNQAVS  K TGDFS ++QALAELKN+  ++GKNSDLQKSVKNGVNGTL
Sbjct  777   INQKITDKVDNLNQAVSEIKLTGDFSKVEQALAELKNLSLDLGKNSDLQKSVKNGVNGTL  836

Query  838   vgnglsvTEATTLTKKFSDIKKELNEK-FANFNKNSNGLKNSAEPIYAQVNKKKTGQVAS  896
             V+NGLS TEATTLTK+FSDI+KELNEK F+N N+N+NGLKN++EPIYAQVNKKKTGQ +S
Sbjct  837   VSNGLSKTEATTLTKNFSDIRKELNEKLFGNSNNNNNGLKNNTEPIYAQVNKKKTGQATS  896

Query  897   PEESIYTQVAKEVNEKINRLNEKASASKGVGNFSGAGRLDSPEPIYATIDDLGGPFSLKK  956
             PEE+IY+QVAK V+ KI++LNE +SA +         ++D  + I ++  ++GG FS   
Sbjct  897   PEEPIYAQVAKKVSAKIDQLNEATSAINR--------KIDRINKIASAGKGVGG-FS---  944

Query  957   YAKVDDLSKVGARQSDSPEPIYATID---DLGGSSSLKRHAKVDDLTKVGFSREQELTQK  1013
                       GA +S SPEPIYATID      ++ +L+R A V+DL+KVG+SREQELT++
Sbjct  945   ----------GAGRSASPEPIYATIDFDEANQAGFPLRRSAAVNDLSKVGLSREQELTRR  994

Query  1014  IGNLNQAVSEAKAGFFGNLEQTMDGLKDSTKKNVVNLWVESAKNVPTSLQAKLDNYATNS  1073
             IG+L+QAVSEAK+G FGNLEQ +D LKDSTKKN ++LWVESAK+VPTSLQAKLDNYATNS
Sbjct  995   IGDLSQAVSEAKTGHFGNLEQKIDELKDSTKKNALKLWVESAKQVPTSLQAKLDNYATNS  1054

Query  1074  HTRINSNVQNGTINEKATGMLTQKNPEWLKLVNDKIVAHNVGSAPLSDYDKIGFNQKNMK  1133
             HTRINSNVQ+GTINEKATGMLTQKNPEWLKLVNDKIVAHNVGSAPLS YDKIGFNQKNMK
Sbjct  1055  HTRINSNVQSGTINEKATGMLTQKNPEWLKLVNDKIVAHNVGSAPLSAYDKIGFNQKNMK  1114

Query  1134  GYSDSFKFSTKLSNAVKNIKSGFEQLLTDCISAGSYSPKKA--EYGV----TKSGFQKS  1186
             +YSDSFKFSTKL+NAVK+IKS+F Q+LT+ +S+GSYS  KA  E GV    TK+GFQKS
Sbjct  1115  DYSDSFKFSTKLNNAVKDIKSSFVQFLTNTFSTGSYSLMKANVEHGVKNTNTKGGFQKS  1173

28) HPSH417_02620 in NC_017739


> NC_017366_P1|24|G24|385215791|YP_005775747.1|Helicobacter_pylori_F32|+|32443..35964|cagA|HPF32_0523|cag 
pathogenicity island 
protein
Length=1173

 Score = 1409 bits (5347),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 937/1207 (78%), Positives = 1074/1207 (89%), Gaps = 44/1207 (3%)

Query  1     MANETINQPDQTPSQTAFDSQQFINNLQVAFIKVDSAVASFDPDQKPIVDKNDRDNRQAF  60
             M+NETI+Q   TP QT+F +Q+FINNLQVAFIKVD+AVASFDPDQKPIVDKND+DNRQAF
Sbjct  1     MTNETIDQTT-TPDQTGFVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDKDNRQAF  59

Query  61    DGISQLREEYANKAIKNPTKKNQYFSDFISKSNDLINKDNLIDTDSSTKSFQKFGTERYQ  120
             + ISQLREEYANKAIKNP+KKNQYFSDFI+KSNDLINKDNLI  DSS  SF+KFG +RYQ
Sbjct  60    EKISQLREEYANKAIKNPAKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQRYQ  119

Query  121   IFMNWVSHQKDPSKINTQKIRNFMENIIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRS  180
             IF +WVS QKDPSKINTQ+IRNFMEN+IQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRS
Sbjct  120   IFTSWVSLQKDPSKINTQQIRNFMENVIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRS  179

Query  181   DEKFMGVFEESLKERQEAENNGEPAGGDWLDIFLSFVFGKKQSSDLKETLNQEPRPNVEQ  240
             DEKFMGVF+ESLK RQEAE+N+EPAGGDWLDIFLSFVF KKQSSDLKETLNQEPRP+ EQ
Sbjct  180   DEKFMGVFDESLKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPDFEQ  239

Query  241   NIATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLVVHNNA  300
             N+ATTTTDIQGLPPEARDLLDERGNF KFTLGD+EMLDVEGVAD DPNYKFNQL++HNNA
Sbjct  240   NLATTTTDIQGLPPEARDLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIHNNA  299

Query  301   LSSMLMGSHSNMEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLKNGSG  360
             LSSMLMGSHSN+EPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHL+NGSG
Sbjct  300   LSSMLMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLNNGSG  359

Query  361   LIIAGNENGINNPSFYLYKKDQLTGLEQALSQEEIQNKLGFMEFLAQNSARHVGLNNLSK  420
             LIIAGNE+GI+NPSFYLYK DQLTGL QALSQEEIQNK++FMEFLAQN+A+   L+NLS 
Sbjct  360   LIIAGNEDGIKNPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAK---LDNLSE  416

Query  421   EEKEKFQTEIGNFQKDPKPYLDSLGNDRIAFVSKKDSKHLALVTEFGNGELSYTLKDYGK  480
              EKEKFQTEI NFQKD K+YLD+LGND+IAFVSKKD+KHLALVTEFGNGELSYTLKDYGK
Sbjct  417   KEKEKFQTEIENFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGELSYTLKDYGK  476

Query  481   KPDRALDRETKTTLQGNLKHDGVMFVNYSNFKYTNASKSPNEGIGATNGVSHLEANFSKV  540
             K D+ALD ETKTTLQG+LK DGVMFVNYSNFKYTNASKSPN G+G+TNGVSHLEANFSKV
Sbjct  477   KQDKALDGETKTTLQGSLKYDGVMFVNYSNFKYTNASKSPNKGLGTTNGVSHLEANFSKV  536

Query  541   AVFNLASSNELTISNFAKRNLEDKLIAKGLSGKESNKLIKDFLNSNKELLEKSLNFNKAV  600
             AVFNL++ N+L+I+N+ +R+LEDKL AKGLS +E+NKLIKDFLNSNKE++ K  NFNKAV
Sbjct  537   AVFNLPNLNNLAITNYIRRDLEDKLWAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAV  596

Query  601   AEAKNTGNYGGVKKAQKDLEKSIRKREHLEKEVTKKFESKSGNKNKMEAKAQANNQKDEI  660
             AEAKNTGNY+ VKKAQKDLEKS+RKREHLEKEV+KK+ES+++NKN+MEAKAQAN+QKD I
Sbjct  597   AEAKNTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKI  656

Query  661   FRLINEGAHKEARNIAYAQNLKGIRKELSDRMGNINKNLKDFGESFDALKSGKNKDFSKA  720
             F LI++ A KEAR  ++  NLKG+R ELSD++ NINKNLKDFG SFD LKSGKN+DFSKA
Sbjct  657   FALISQEASKEARVATFDPNLKGVRSELSDKLENINKNLKDFGKSFDELKSGKNNDFSKA  716

Query  721   EETLKALKSSVKDLNINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSIKDVI  780
             EETLKALK SVKDL INPEWISK+ENLNAALN+FKNGKNKDFSKVTQAKSDLENSIKDVI
Sbjct  717   EETLKALKDSVKDLGINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVI  776

Query  781   INQQITDKVNNLNQAVSTAKATGDFSRVEQVLAGFKKFLTDQKNENFNVGKNSDLQKSvk  840
             INQ+ITDKV+NLNQAVS  K TGDFS+VEQ LA +K++       ++++GKNSDLQKSVK
Sbjct  777   INQKITDKVDNLNQAVSEIKLTGDFSKVEQALAELKNL-------SLDLGKNSDLQKSVK  829

Query  841   ngvngtlvgnglsvTEATTLAKKFSDIKKELNEK-FANFNKNSNGLKNSAEPIYAQVNKK  899
             NGVNGTLV+NGLS TEATTL+K+FSDI+KELNEK F+N N+N+NGLKN++EPIYAQVNKK
Sbjct  830   NGVNGTLVSNGLSKTEATTLTKNFSDIRKELNEKLFGNSNNNNNGLKNNTEPIYAQVNKK  889

Query  900   KTGQVASPEESIYTQVAKEVNEKINRLNEKASASKGVGNFSGAGRLDRSEPIYATIDDLD  959
             KTGQ +SPEE+IY+QVAK V+ KI++LNE +SA +         ++DR + I ++  +++
Sbjct  890   KTGQATSPEEPIYAQVAKKVSAKIDQLNEATSAINR--------KIDRINKIASAGKGVG  941

Query  960   GSSPLKRYAKVDDLSKAGRLDSPEPIYATID---DLGGPFSLKKYAKVDDLTKVGFSREQ  1016
             G            +S AGR  SPEPIYATID      + F+L++ A V+DL+KVG+SREQ
Sbjct  942   G------------FSGAGRSASPEPIYATIDFDEANQAGFPLRRSAAVNDLSKVGLSREQ  989

Query  1017  ELTQKIGNLNQAVSEAKAGFFGNLEQTMDRLKDSTKKNVVNLWFEGARKVPISLPSSQAK  1076
             ELT++IG+L+QAVSEAK+G FGNLEQ +D LKDSTKKN ++LW E+A++VP SL   QAK
Sbjct  990   ELTRRIGDLSQAVSEAKTGHFGNLEQKIDELKDSTKKNALKLWVESAKQVPTSL---QAK  1046

Query  1077  LDNYATNSHTRINSNVKNGTINEKAIGMLTQKNPEWLKLVNDKIVAHNVGSTPLSDYDKI  1136
             LDNYATNSHTRINSNV++GTINEKA GMLTQKNPEWLKLVNDKIVAHNVGS+PLS YDKI
Sbjct  1047  LDNYATNSHTRINSNVQSGTINEKATGMLTQKNPEWLKLVNDKIVAHNVGSAPLSAYDKI  1106

Query  1137  GFNQKNMKGYSDSFKFSTKLSNAVKNIKSGFEQLLTDCISAGSYSPKKA--EYGV----T  1190
             GFNQKNMK+YSDSFKFSTKL+NAVK+IKS+F Q+LT+ +S+GSYS  KA  E GV    T
Sbjct  1107  GFNQKNMKDYSDSFKFSTKLNNAVKDIKSSFVQFLTNTFSTGSYSLMKANVEHGVKNTNT  1166

Query  1191  KSGFQKS  1197
             K+GFQKS
Sbjct  1167  KGGFQKS  1173

29) HPELS_03850 in NC_017063


> NC_017366_P1|24|G24|385215791|YP_005775747.1|Helicobacter_pylori_F32|+|32443..35964|cagA|HPF32_0523|cag 
pathogenicity island 
protein
Length=1173

 Score = 1407 bits (5339),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 918/1187 (78%), Positives = 1074/1187 (91%), Gaps = 20/1187 (1%)

Query  1     MTNETINQQPQTE-AAFNPQQFINNLQVAFLKLDNAVASFDPDQKPIVDKNDRDNRQAFD  59
             MTNETI+Q    + ++F PQ+FINNLQVAF+K+DNAVASFDPDQKPIVDKND+DNRQAF+
Sbjct  1     MTNETIDQTTTPDQTGFVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDKDNRQAFE  60

Query  60    GISQLREEYSNKAIKNPTKKNQYFSDFINKSNDLINKDNLIDVESSTKSFQKFGDQRYRI  119
              ISQLREEY+NKAIKNP+KKNQYFSDFINKSNDLINKDNLI V+SS  SF+KFGDQRY+I
Sbjct  61    KISQLREEYANKAIKNPAKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQRYQI  120

Query  120   FTSWVSHQNDPSKINTRSIRNFMEHTIQPPISDDKEKAEFLKSAKQSFAGIIIGNQIRTD  179
             FTSWVS Q+DPSKINT+ IRNFME+ IQPPISDDKEKAEFL+SAKQSFAGIIIGNQIR+D
Sbjct  121   FTSWVSLQKDPSKINTQQIRNFMENVIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSD  180

Query  180   QKFMGVFDESLKERQEAEKNGEPTGGDWLDIFLSFIFDKKRSSDVKEAINQEPVPHVQPD  239
             +KFMGVFDESLK RQEAEKN+EP+GGDWLDIFLSF+F+KK+SSD+KE++NQEP P+ + +
Sbjct  181   EKFMGVFDESLKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPDFEQN  240

Query  240   IATTTTHIQGLPPESRDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNAL  299
             +ATTTT+IQGLPPE+RDLLDERGNF KFTLGD+EMLDVEGVAD DPNYKFNQLLIHNNAL
Sbjct  241   LATTTTDIQGLPPEARDLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIHNNAL  300

Query  300   SSVLMGSHNGIEPEKVSLLYAGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKNGSGL  359
             SS+LMGSH+ IEPEKVSLLY++NGG  A+HDWNATVGYK+QQGNNVAT+IN H++NGSGL
Sbjct  301   SSMLMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLNNGSGL  360

Query  360   VIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEILNKVDFMEFLAQNNAKLDNLSEKEKE  419
             +IAG E GI+NPSFYLYKEDQLTG ++ALSQEEI NKVDFMEFLAQNNAKLDNLSEKEKE
Sbjct  361   IIAGNEDGIKNPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSEKEKE  420

Query  420   KFRNEIKDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGKGDLSYTLKDYGKKADK  479
             KF+ EI +FQKD KAYLDALGND+IAFVSKKD KH AL+TEFG+G+LSYTLKDYGKK DK
Sbjct  421   KFQTEIENFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGELSYTLKDYGKKQDK  480

Query  480   ALDREKNVTLQGNLKHDGVMFVDYSNFKYTNASKNPNKGVGATNGVSHLDAGFNKVAVFN  539
             ALD E + TLQG+LK DGVMFV+YSNFKYTNASK+PNKG+G+TNGVSHL+A F+KVAVFN
Sbjct  481   ALDGETKTTLQGSLKYDGVMFVNYSNFKYTNASKSPNKGLGTTNGVSHLEANFSKVAVFN  540

Query  540   LPDLNNLAITSFVRRNLEDKLTTKGLSLQEANKLIKDFLSSNKELVGKALNFNKAVAEAK  599
             LP+LNNLAIT+++RR+LEDKL +KGLS QEANKLIKDFL+SNKE+VGK  NFNKAVAEAK
Sbjct  541   LPNLNNLAITNYIRRDLEDKLWAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAVAEAK  600

Query  600   STGNYDEVKKAQKDLEKSlrkrehlekevekklesksGNKNKMEAKSQANSQKDEIFALI  659
             +TGNYDEVKKAQKDLEKSLRKREHLEKEV KKLES+++NKN+MEAK+QANSQKD IFALI
Sbjct  601   NTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKIFALI  660

Query  660   NKEANRDARAIAYSQNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKAEETL  719
             ++EA+++AR  ++  NLKG++ ELSDKLENINK+LKDF+KSFDE+K+GKN+DFSKAEETL
Sbjct  661   SQEASKEARVATFDPNLKGVRSELSDKLENINKNLKDFGKSFDELKSGKNNDFSKAEETL  720

Query  720   KALKGSVKDLGINPEWISKVENLNAALNDFKNGKNKDFSKVTQAKSDLENSVKDVIINQK  779
             KALK+SVKDLGINPEWISK+ENLNAALNDFKNGKNKDFSKVTQAKSDLENS+KDVIINQK
Sbjct  721   KALKDSVKDLGINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVIINQK  780

Query  780   ITDKVDDLNQAVSVAKATGDFSRVEQALADLKNFSKEQLAQQAQKNESFNVGKKSEIYQS  839
             ITDKVD+LNQAVS  K TGDFS+VEQALA+LKN+             S+++GK+S++ +S
Sbjct  781   ITDKVDNLNQAVSEIKLTGDFSKVEQALAELKNL-------------SLDLGKNSDLQKS  827

Query  840   VKSGVNGTLVGNGLSGIEATALAKNFSDIkkelnekf-knfnnnnnglknSTEPIYAKVN  898
             VK+GVNGTLV+NGLS  EAT+L+KNFSDI+KELNEK+  N NNNNNGLKN+TEPIYA+VN
Sbjct  828   VKNGVNGTLVSNGLSKTEATTLTKNFSDIRKELNEKLFGNSNNNNNGLKNNTEPIYAQVN  887

Query  899   KKKTGQVASPEEPIYTQVAKKVNAKIDRLNQIASGLG-GVGQAAGFPLKKHDKVDDLSKV  957
             KKKTGQ +SPEEPIY+QVAKKV+AKID+LN+ +S++   +++   ++      V+++S  
Sbjct  888   KKKTGQATSPEEPIYAQVAKKVSAKIDQLNEATSAINRKIDRINKIA-SAGKGVGGFSGA  946

Query  958   GRSVSPEPIYATID---DLGGPFPLKKHAKVDDLSKVGLSRNQELAQKIDNLNQAVLEAK  1014
             GRS SPEPIYATID      + FPL++ A V+DLSKVGLSR+QEL+++I++L+QAV EAK
Sbjct  947   GRSASPEPIYATIDFDEANQAGFPLRRSAAVNDLSKVGLSREQELTRRIGDLSQAVSEAK  1006

Query  1015  AGFFGNLERTVDKLKDSTKHNPMNLWAESAKKVPASLSAKLDNYATNSHTRINSNIQNGA  1074
             +G FGNLE+ +D LKDSTK N+++LW ESAK+VP+SL AKLDNYATNSHTRINSN+Q+G+
Sbjct  1007  TGHFGNLEQKIDELKDSTKKNALKLWVESAKQVPTSLQAKLDNYATNSHTRINSNVQSGT  1066

Query  1075  INEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFSTKL  1134
             INEKATGMLTQKNPEWLKLVNDKIVAHNVGS PLS YDKIGFNQKNMKDYSDSFKFSTKL
Sbjct  1067  INEKATGMLTQKNPEWLKLVNDKIVAHNVGSAPLSAYDKIGFNQKNMKDYSDSFKFSTKL  1126

Query  1135  NNAVKDVKSGFTQFLSNAFSTGYYCLARENAEHGIKNVNTKGGFQKS  1181
             NNAVKD+KS+F QFL+N+FSTG Y L + N EHG+KN NTKGGFQKS
Sbjct  1127  NNAVKDIKSSFVQFLTNTFSTGSYSLMKANVEHGVKNTNTKGGFQKS  1173

30) HPSNT_02820 in NC_017376


> NC_017366_P1|24|G24|385215791|YP_005775747.1|Helicobacter_pylori_F32|+|32443..35964|cagA|HPF32_0523|cag 
pathogenicity island 
protein
Length=1173

 Score = 1401 bits (5316),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 925/1172 (79%), Positives = 1063/1172 (91%), Gaps = 20/1172 (1%)

Query  20    AFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNRQAFDGISQLREEYSNKAIK  79
             +F PQ+FINNLQVAF+KVDNAVAS+DPDQKPIVDKND+DNRQAF+ ISQLREEY+NKAIK
Sbjct  16    GFVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDKDNRQAFEKISQLREEYANKAIK  75

Query  80    NPTKKNQYFSDFINKSNDLINKDALIDVESSTKSFQKFGDQRYRIFTSWVSHQNDPSKIN  139
             NP+KKNQYFSDFINKSNDLINKD LI V+SS  SF+KFGDQRY+IFTSWVS Q+DPSKIN
Sbjct  76    NPAKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQRYQIFTSWVSLQKDPSKIN  135

Query  140   TRSIRNFMENIIQPPISDDKEKAEFLKSAKQSFAGIIIGNQIRTDQKFMGVFDESLKERQ  199
             T+ IRNFMEN+IQPPISDDKEKAEFL+SAKQSFAGIIIGNQIR+D+KFMGVFDESLK RQ
Sbjct  136   TQQIRNFMENVIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSDEKFMGVFDESLKARQ  195

Query  200   EAEKNGEPTGGDWLDIFLSFIFDKKQSSDVKEAINQEPVPHVQPDIATTTTHIQGLPPES  259
             EAEKN+EP+GGDWLDIFLSF+F+KKQSSD+KE++NQEP P+ + ++ATTTT+IQGLPPE+
Sbjct  196   EAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPDFEQNLATTTTDIQGLPPEA  255

Query  260   RDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALSSVLMGSHNGIEPEK  319
             RDLLDERGNF KFTLGD+EMLDVEGVAD DPNYKFNQLLIHNNALSS+LMGSH+ IEPEK
Sbjct  256   RDLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIHNNALSSMLMGSHSNIEPEK  315

Query  320   VSLLYAGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKNGSGLVIAGGEKGINNPSFY  379
             VSLLY++NGG  A+HDWNATVGYK+QQGNNVAT+IN H++NGSGL+IAG E GI+NPSFY
Sbjct  316   VSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLNNGSGLIIAGNEDGIKNPSFY  375

Query  380   LYKEDQLTGSQRALSQEEIRNKIDFMEFLAQNNAKLDNLSEKEKEKFRNEIKDFQKDSKA  439
             LYKEDQLTG ++ALSQEEI+NK+DFMEFLAQNNAKLDNLSEKEKEKF+ EI +FQKD KA
Sbjct  376   LYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSEKEKEKFQTEIENFQKDRKA  435

Query  440   YLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGKKADKALDRETKTTLQGSLK  499
             YLDALGND+IAFVSKKD KH AL+TEFGNG+LSYTLKDYGKK DKALD ETKTTLQGSLK
Sbjct  436   YLDALGNDHIAFVSKKDPKHLALVTEFGNGELSYTLKDYGKKQDKALDGETKTTLQGSLK  495

Query  500   HDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFDKVAVFnlsnlnnlTITSFIRQ  559
              DGVMFV+YSNFKYTNASK+PNKG+G TNGVSHLEA F KVAVFNL+NLNNL+IT++IR+
Sbjct  496   YDGVMFVNYSNFKYTNASKSPNKGLGTTNGVSHLEANFSKVAVFNLPNLNNLAITNYIRR  555

Query  560   DLEDKLVAKGLSPQEANKLIKDFLSNNKELVGKVSNFNKAVAEAKNTGNYDEVKKAQKDL  619
             DLEDKL AKGLSPQEANKLIKDFL++NKE+VGKVSNFNKAVAEAKNTGNYDEVKKAQKDL
Sbjct  556   DLEDKLWAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAVAEAKNTGNYDEVKKAQKDL  615

Query  620   EKSLRKREHLEKEVAKNLESKSGNKNKMEAKSQANSQKDEIFALINKeatrearaaayaS  679
             EKSLRKREHLEKEVAK+LES+++NKN+MEAK+QANSQKD IFALI++EA++EAR A++ +
Sbjct  616   EKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKIFALISQEASKEARVATFDP  675

Query  680   NLKGIKRELSDKLENINKNLKGFDKSFDEFKNGKNKDFSKAEETLKALKGSVKDLGINPE  739
             NLKG++ ELSDKLENINKNLK+F+KSFDE+K+GKN+DFSKAEETLKALK+SVKDLGINPE
Sbjct  676   NLKGVRSELSDKLENINKNLKDFGKSFDELKSGKNNDFSKAEETLKALKDSVKDLGINPE  735

Query  740   WISKVENLNAALNEFKNGKNKDFSKVTQAKNDLENSVKDVIINQKITDKVDNLNQAVSVA  799
             WISK+ENLNAALN+FKNGKNKDFSKVTQAK+DLENS+KDVIINQKITDKVDNLNQAVS  
Sbjct  736   WISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVIINQKITDKVDNLNQAVSEI  795

Query  800   KVTGDFSSVEQALADLKNFSKEQLAQQAQKNEDFNTGKNSALYQSVKngvngtlvgnglS  859
             K+TGDFS VEQALA+LKN+S             ++ GKNS L +SVKNGVNGTLV+NGLS
Sbjct  796   KLTGDFSKVEQALAELKNLS-------------LDLGKNSDLQKSVKNGVNGTLVSNGLS  842

Query  860   KAEATTLSKNFSDIKKElnak--lgnfnnnnnnglknEPIYAKVNKKKAGQAASLEEPIY  917
             K+EATTL+KNFSDI+KELN K    + NNNN    + EPIYA+VNKKK+GQA+S EEPIY
Sbjct  843   KTEATTLTKNFSDIRKELNEKLFGNSNNNNNGLKNNTEPIYAQVNKKKTGQATSPEEPIY  902

Query  918   AQVAKKVNAKIDQLNQAASGLG-GVGQAAGIPLKRHDKVDDLSKVGLSASPEPIYATID-  975
             AQVAKKV+AKIDQLN+A+S++   +++   I+      V+++S  G SASPEPIYATID 
Sbjct  903   AQVAKKVSAKIDQLNEATSAINRKIDRINKIA-SAGKGVGGFSGAGRSASPEPIYATIDF  961

Query  976   --DLGGPFPLKRHDKVDDLSKVGLSRNQELAQKIDNLNQAVSEAKAGFFGNLEQTIDKLK  1033
                  + FPL+R   V+DLSKVGLSR+QEL+++I++L+QAVSEAK+G FGNLEQ ID LK
Sbjct  962   DEANQAGFPLRRSAAVNDLSKVGLSREQELTRRIGDLSQAVSEAKTGHFGNLEQKIDELK  1021

Query  1034  DSTKHNPMNLWVESAKKVPASLSAKLDNYATNSHTRINSNIKNGAINEKATGMLTQKNPE  1093
             DSTK N+++LWVESAK+VP+SL AKLDNYATNSHTRINSN+++G+INEKATGMLTQKNPE
Sbjct  1022  DSTKKNALKLWVESAKQVPTSLQAKLDNYATNSHTRINSNVQSGTINEKATGMLTQKNPE  1081

Query  1094  WLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFSTKLNNAAKDIKSGFTQFL  1153
             WLKLVNDKIVAHNVGS PLS YDKIGFNQKNMKDYSDSFKFSTKLNNA KDIKS+F QFL
Sbjct  1082  WLKLVNDKIVAHNVGSAPLSAYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDIKSSFVQFL  1141

Query  1154  ANAFSTGYYCLAGENAEHGIKNVNTKGGFQKS  1185
             +N+FSTG Y L   N EHG+KN NTKGGFQKS
Sbjct  1142  TNTFSTGSYSLMKANVEHGVKNTNTKGGFQKS  1173

31) HPPN120_02680 in NC_017378


> NC_017366_P1|24|G24|385215791|YP_005775747.1|Helicobacter_pylori_F32|+|32443..35964|cagA|HPF32_0523|cag 
pathogenicity island 
protein
Length=1173

 Score = 1400 bits (5312),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 953/1181 (81%), Positives = 1073/1181 (91%), Gaps = 17/1181 (1%)

Query  1     MANETINQTEKLDQTPNQTAFDPQQFINNLQVAFIKVDSAVASFDPDQKPIVDKNDRDNR  60
             M+NETI+QT     TP+QT+F PQ+FINNLQVAFIKVD+AVASFDPDQKPIVDKND+DNR
Sbjct  1     MTNETIDQTT----TPDQTGFVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDKDNR  56

Query  61    QAFNGISQLREEYANKAIKNPTKKNQYFSDFIDKSNDLINKDNLIDTDSSTKSFQKFGTE  120
             QAF+ ISQLREEYANKAIKNP+KKNQYFSDFI+KSNDLINKDNLI  DSS  SF+KFG +
Sbjct  57    QAFEKISQLREEYANKAIKNPAKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQ  116

Query  121   RYQIFMNWVSHQKDPSKINTQKIRNFMENIIQPPISDDKEKAEFLRSAKQSFAGIIIGNQ  180
             RYQIF +WVS QKDPSKINTQ+IRNFMEN+IQPPISDDKEKAEFLRSAKQSFAGIIIGNQ
Sbjct  117   RYQIFTSWVSLQKDPSKINTQQIRNFMENVIQPPISDDKEKAEFLRSAKQSFAGIIIGNQ  176

Query  181   IRSDEKFMGIFDESLKERQEAEKNGEPASGDWLDIFLSFVFGKKQSSDLKETLNQEPRPN  240
             IRSDEKFMG+FDESLK RQEAEKN+EPA+GDWLDIFLSFVF KKQSSDLKETLNQEPRP+
Sbjct  177   IRSDEKFMGVFDESLKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPD  236

Query  241   VEQNIAATTTPIQGLPLEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIH  300
              EQN+A+TTT IQGLP EARDLLDERGNF KFTLGD+EMLDVEGVAD DPNYKFNQLLIH
Sbjct  237   FEQNLATTTTDIQGLPPEARDLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIH  296

Query  301   NNALSSMLMGSRSNIELEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLKN  360
             NNALSSMLMGS+SNIE EKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHL+N
Sbjct  297   NNALSSMLMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLNN  356

Query  361   GSGLVIAGNENGINNPSFYLYKEDQLTGLKKALSQEEIQNKLGFMELLAQNNAKLDNLSK  420
             GSGL+IAGNE+GI+NPSFYLYKEDQLTGLK+ALSQEEIQNK++FME+LAQNNAKLDNLS 
Sbjct  357   GSGLIIAGNEDGIKNPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSE  416

Query  421   EEKEKFQTEIGNFQKDPKAYLDSLGKDRIAFVSKKDQKHLALVTEFGNGELSYTLKDYGK  480
              EKEKFQTEI NFQKD KAYLD+LG+D+IAFVSKKD KHLALVTEFGNGELSYTLKDYGK
Sbjct  417   KEKEKFQTEIENFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGELSYTLKDYGK  476

Query  481   KQDRALDRETKTTLQGNLKHDGVMFVNYSNFKYTNASKSPNEGIGATNGVSHLEANFSKV  540
             KQD+ALD ETKTTLQG+LK DGVMFVNYSNFKYTNASKSPN G+G+TNGVSHLEANFSKV
Sbjct  477   KQDKALDGETKTTLQGSLKYDGVMFVNYSNFKYTNASKSPNKGLGTTNGVSHLEANFSKV  536

Query  541   AVFDLPDLNGLAISGFVRRNLEDKLIAKGLPPKEANKIIKDFLNSNKELVGKALNFNKAV  600
             AVF+LP+LN LAI+ ++RR+LEDKL AKGL+P+EANK+IKDFLNSNKE+VGK  NFNKAV
Sbjct  537   AVFNLPNLNNLAITNYIRRDLEDKLWAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAV  596

Query  601   AEAKNTGNYDGVKKAQKDLEKSIRKRERLEKEITkkfenkssnknkmeakaQANSQKDEV  660
             AEAKNTGNYD VKKAQKDLEKS+RKRE+LEKE++KK+E+++ NKN+MEAKAQANSQKD +
Sbjct  597   AEAKNTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKI  656

Query  661   FKLINEGAHKEARIAAYAQNLKGIRRELFDKIENTNKNLKDFGESFDALKSGKNKDFSKA  720
             F LI++ A KEAR+A++  NLKG+R EL DK+EN NKNLKDFG SFD LKSGKN+DFSKA
Sbjct  657   FALISQEASKEARVATFDPNLKGVRSELSDKLENINKNLKDFGKSFDELKSGKNNDFSKA  716

Query  721   EETLKALQSSVKDLGINPEWTSKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSIKDVI  780
             EETLKAL+ SVKDLGINPEW SK+ENLNAALN+FKNGKNKDFSKVTQAKSDLENSIKDVI
Sbjct  717   EETLKALKDSVKDLGINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVI  776

Query  781   INQEITDKVDNLNQAVLMAKAIGDFSGVEQALAELKNFSTDQKNESFNVQKSVKngvngt  840
             INQ ITDKVDNLNQAV   K  GDFS VEQALAELKN+S D  ++S ++QKSVKNGVNGT
Sbjct  777   INQKITDKVDNLNQAVSEIKLTGDFSKVEQALAELKNLSLDLGKNS-DLQKSVKNGVNGT  835

Query  841   lvgnglSETEATTLTKKISDIRKelnekf-ansnnnnnglknsaEPIYAKVNKKKTGQVA  899
             LV+NGLS TEATTLTK++SDIRKELNEK+ +NSNNNNNGLKN++EPIYA+VNKKKTGQ +
Sbjct  836   LVSNGLSKTEATTLTKNFSDIRKELNEKLFGNSNNNNNGLKNNTEPIYAQVNKKKTGQAT  895

Query  900   SPEESIYDQLAKEVKAKIDKLNKIASA--SKSDSSEPIYATIDDLGGPFPLSRLGRSDSS  957
             SPEE+IY Q+AK V AKID+LN  +SA   K D  + I ++  ++GG   +S  GRS S+
Sbjct  896   SPEEPIYAQVAKKVSAKIDQLNEATSAINRKIDRINKIASAGKGVGG---FSGAGRSASP  952

Query  958   EPIYATID----DLGGPSLKRYAKVDDLSKVGLSRDQKLTQKIGNLDQAVSEAKAGFFGN  1013
             EPIYATID    + +G +L+R A V+DLSKVGLSR+Q LT++IG+L QAVSEAK+G FGN
Sbjct  953   EPIYATIDFDEANQAGFPLRRSAAVNDLSKVGLSREQELTRRIGDLSQAVSEAKTGHFGN  1012

Query  1014  LEQTIDRLKDSTKKNVVNLWVESAKKVPAILQEKLDNYATNSHTRINSNVKNGTINEKAT  1073
             LEQ ID LKDSTKKN ++LWVESAK+VP+ LQ KLDNYATNSHTRINSNV++GTINEKAT
Sbjct  1013  LEQKIDELKDSTKKNALKLWVESAKQVPTSLQAKLDNYATNSHTRINSNVQSGTINEKAT  1072

Query  1074  GMLTQKNPEWLKLVNDKIVAHNVGSTPLSDYDKIGFNQKNMKGYSDSFKFSTKLNNAVKN  1133
             GMLTQKNPEWLKLVNDKIVAHNVGS+PLS YDKIGFNQKNMK+YSDSFKFSTKLNNAVK+
Sbjct  1073  GMLTQKNPEWLKLVNDKIVAHNVGSAPLSAYDKIGFNQKNMKDYSDSFKFSTKLNNAVKD  1132

Query  1134  IKSGFEQFLTDCISAGSYNPIKA--EHGVKNINTKSGFQKS  1172
             IKS+F QFLT+ +S+GSY+ +KA  EHGVKN NTK+GFQKS
Sbjct  1133  IKSSFVQFLTNTFSTGSYSLMKANVEHGVKNTNTKGGFQKS  1173

32) HPSJM_02765 in NC_014560


> NC_017366_P1|24|G24|385215791|YP_005775747.1|Helicobacter_pylori_F32|+|32443..35964|cagA|HPF32_0523|cag 
pathogenicity island 
protein
Length=1173

 Score = 1396 bits (5298),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 916/1187 (78%), Positives = 1062/1187 (90%), Gaps = 20/1187 (1%)

Query  1     MTNETIDQQPQTE-AAFNPQQFINNLQVAFLKLDNAVASFDPDQKPIVDKNDRDNRQAFD  59
             MTNETIDQ    + ++F PQ+FINNLQVAF+K+DNAVASFDPDQKPIVDKND+DNRQAF+
Sbjct  1     MTNETIDQTTTPDQTGFVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDKDNRQAFE  60

Query  60    GISQLREEYSNKAIKNPTKKNQYFSDFINKSNDLINKDALIDVESSTKSFQKFGDQRYRI  119
              ISQLREEY+NKAIKNP+KKNQYFSDFINKSNDLINKD LI V+SS  SF+KFGDQRY+I
Sbjct  61    KISQLREEYANKAIKNPAKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQRYQI  120

Query  120   FTSWVSHQNDPSKINTRSIRNFMEHTIQPPIPDDKEKAEFLKSAKQSFAGIIIGNQIRTD  179
             FTSWVS Q+DPSKINT+ IRNFME+ IQPPI+DDKEKAEFL+SAKQSFAGIIIGNQIR+D
Sbjct  121   FTSWVSLQKDPSKINTQQIRNFMENVIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSD  180

Query  180   QKFMGVFDESLKERQEAEKNGGPSGGDWLDIFLSFIFDKKQSSDVKEAINQEPVPHVQPD  239
             +KFMGVFDESLK RQEAEKN+ P+GGDWLDIFLSF+F+KKQSSD+KE++NQEP P+ + +
Sbjct  181   EKFMGVFDESLKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPDFEQN  240

Query  240   IATTTTDIQGLPPESRDLLDERGNFSKFTLGDMNMLDVEGVADIDPNYKFNQLLIHNNAL  299
             +ATTTTDIQGLPPE+RDLLDERGNF KFTLGD++MLDVEGVAD DPNYKFNQLLIHNNAL
Sbjct  241   LATTTTDIQGLPPEARDLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIHNNAL  300

Query  300   SSVLMGSHNGIEPEKVSLLYAGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKNGSGL  359
             SS+LMGSH+ IEPEKVSLLY++NGG  A+HDWNATVGYK+QQGNNVAT+IN H++NGSGL
Sbjct  301   SSMLMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLNNGSGL  360

Query  360   VIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIRNKIDFMEFLAQNNAKLDNLSEKEKE  419
             +IAG E GI+NPSFYLYKEDQLTG ++ALSQEEI+NK+DFMEFLAQNNAKLDNLSEKEKE
Sbjct  361   IIAGNEDGIKNPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSEKEKE  420

Query  420   KFRNEIKDFQKDSKAYLDALGNDRIAFVSKKDPKHSALITEFNKGDLSYTLKDYGKKADK  479
             KF+ EI +FQKD KAYLDALGND+IAFVSKKDPKH AL+TEF +G+LSYTLKDYGKK DK
Sbjct  421   KFQTEIENFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGELSYTLKDYGKKQDK  480

Query  480   ALDREKNVTLQGNLKHDGVMFVDYSNFKYTNASKNPNKGVGATNGVSHLDAGFSKVAVFN  539
             ALD E + TLQG+LK DGVMFV+YSNFKYTNASK+PNKG+G+TNGVSHL+A FSKVAVFN
Sbjct  481   ALDGETKTTLQGSLKYDGVMFVNYSNFKYTNASKSPNKGLGTTNGVSHLEANFSKVAVFN  540

Query  540   LPDLNNLAINSFVRRNLEDKLVAKGLPPQEANKLIKDFLSSNKELVGKALNFNKAVADAK  599
             LP+LNNLAI +++RR+LEDKL AKGL+PQEANKLIKDFL+SNKE+VGK  NFNKAVA+AK
Sbjct  541   LPNLNNLAITNYIRRDLEDKLWAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAVAEAK  600

Query  600   NTGNYDEVKKAQKDLEKSlrkrehlekevekklesksGNKNKMEAKAQANSQKDEIFALI  659
             NTGNYDEVKKAQKDLEKSLRKREHLEKEV KKLES+++NKN+MEAKAQANSQKD IFALI
Sbjct  601   NTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKIFALI  660

Query  660   NKEANRDARAITYSQNLKGIKRELSDKLESINKDLKDFSKSFDEFKNGKNKDFSKAEETL  719
             ++EA+++AR  T+  NLKG++ ELSDKLE+INK+LKDF+KSFDE+K+GKN+DFSKAEETL
Sbjct  661   SQEASKEARVATFDPNLKGVRSELSDKLENINKNLKDFGKSFDELKSGKNNDFSKAEETL  720

Query  720   KALKGSVKDLGINPEWISKVENLNAALNDFKNGKNKDFSKVTQAKIDLENSIKDTIINQK  779
             KALK+SVKDLGINPEWISK+ENLNAALNDFKNGKNKDFSKVTQAK DLENSIKD IINQK
Sbjct  721   KALKDSVKDLGINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVIINQK  780

Query  780   ITDKVDDLNQAVSVAKATGDFSRVEQALADLKNFSKEQLAQQTQKNESFNVGKKSEIYQS  839
             ITDKVD+LNQAVS  K TGDFS+VEQALA+LKN+             S+++GK+S++ +S
Sbjct  781   ITDKVDNLNQAVSEIKLTGDFSKVEQALAELKNL-------------SLDLGKNSDLQKS  827

Query  840   VKngvngtlvgnglSQVEATTLSKNFSDIKKELNAkl-fgnfnnnnnnglknEPIYAKVN  898
             VKNGVNGTLV+NGLS+ EATTL+KNFSDI+KELN KL   + NNNN    + EPIYA+VN
Sbjct  828   VKNGVNGTLVSNGLSKTEATTLTKNFSDIRKELNEKLFGNSNNNNNGLKNNTEPIYAQVN  887

Query  899   KKKTEQAASPEEPIYTQVAKKVTQKIDRLNQIASGLG-GVGQAAGFPLKRHDKVEDLSKV  957
             KKKT QA+SPEEPIY+QVAKKV+ KID+LN+ +S++   +++   ++      V ++S  
Sbjct  888   KKKTGQATSPEEPIYAQVAKKVSAKIDQLNEATSAINRKIDRINKIA-SAGKGVGGFSGA  946

Query  958   GRSVSPEPIYATID---DLGGPFPLKRHDKVDDLSKVGLSREQQLKQKIDNLSQAVSEAK  1014
             GRS SPEPIYATID      + FPL+R   V+DLSKVGLSREQ+L ++I++LSQAVSEAK
Sbjct  947   GRSASPEPIYATIDFDEANQAGFPLRRSAAVNDLSKVGLSREQELTRRIGDLSQAVSEAK  1006

Query  1015  AGFFGNLEQTIDKLKDSTKHNPMNLWVESAKKVPTSLSAKLDNYATNSHTRINSNIKNGA  1074
             +G FGNLEQ ID LKDSTK N+++LWVESAK+VPTSL AKLDNYATNSHTRINSN+++G+
Sbjct  1007  TGHFGNLEQKIDELKDSTKKNALKLWVESAKQVPTSLQAKLDNYATNSHTRINSNVQSGT  1066

Query  1075  INEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFSTKL  1134
             INEKATGMLTQKNPEWLKLVNDKIVAHNVGS PLS YDKIGFNQKNMKDYSDSFKFSTKL
Sbjct  1067  INEKATGMLTQKNPEWLKLVNDKIVAHNVGSAPLSAYDKIGFNQKNMKDYSDSFKFSTKL  1126

Query  1135  NNAVKDVKSGFTQFLANAFSTGYYCLAGENAEHGIKNVNTKGGFQKS  1181
             NNAVKD+KS+F QFL+N+FSTG Y L   N EHG+KN NTKGGFQKS
Sbjct  1127  NNAVKDIKSSFVQFLTNTFSTGSYSLMKANVEHGVKNTNTKGGFQKS  1173

33) HPSH_04145 in NC_010698


> NC_017366_P1|24|G24|385215791|YP_005775747.1|Helicobacter_pylori_F32|+|32443..35964|cagA|HPF32_0523|cag 
pathogenicity island 
protein
Length=1173

 Score = 1393 bits (5286),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 937/1187 (79%), Positives = 1059/1187 (90%), Gaps = 40/1187 (3%)

Query  1     MANETINQTKNPDQTPNQTAFDPQQFINNLQVAFIKVDSAVASFDPDQKPIVDKNDRDNR  60
             M+NETI+QT     TP+QT+F PQ+FINNLQVAFIKVD+AVASFDPDQKPIVDKND+DNR
Sbjct  1     MTNETIDQTT----TPDQTGFVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDKDNR  56

Query  61    QAFNGISQLREEYankaiknpnkknQYFSDFINKSNDLINKDNLIDTDSSTKSFQKFGPE  120
             QAF+ ISQLREEYANKAIKNP KKNQYFSDFINKSNDLINKDNLI  DSS  SF+KFG +
Sbjct  57    QAFEKISQLREEYANKAIKNPAKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQ  116

Query  121   PYQIFMNWVSHQKDPSKINTQKIRDFMENIIQPPISDDKEKAEFLRSAKQSFAGIIIGNQ  180
              YQIF +WVS QKDPSKINTQ+IR+FMEN+IQPPISDDKEKAEFLRSAKQSFAGIIIGNQ
Sbjct  117   RYQIFTSWVSLQKDPSKINTQQIRNFMENVIQPPISDDKEKAEFLRSAKQSFAGIIIGNQ  176

Query  181   TRSDEKFMGVFEESLKEKQEAEKKGEPSG-DWLDIFLSFVFNKKQSSDLKETLNQEPRPN  239
              RSDEKFMGVF+ESLK +QEAEK++EP+G DWLDIFLSFVFNKKQSSDLKETLNQEPRP+
Sbjct  177   IRSDEKFMGVFDESLKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPD  236

Query  240   VEQNIATTPTPIQGLPLEARDLLDERGDFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIH  299
              EQN+ATT T IQGLP EARDLLDERG+F KFTLGD+EMLDVEGVAD DPNYKFNQLLIH
Sbjct  237   FEQNLATTTTDIQGLPPEARDLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIH  296

Query  300   NNALSSMLMGSHGNIDLEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLKN  359
             NNALSSMLMGSH+NI+ EKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHL+N
Sbjct  297   NNALSSMLMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLNN  356

Query  360   GSGLIIAGNENGINNPSFYLYKKDQLTGLEQALSQEEIQNKLGFMEFLAQNSARHVGLNN  419
             GSGLIIAGNE+GI+NPSFYLYK DQLTGL QALSQEEIQNK++FMEFLAQN+A+   L+N
Sbjct  357   GSGLIIAGNEDGIKNPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAK---LDN  413

Query  420   LSKEEKEKFQTEIGNFQKDPKAYLDTLGSDHIAFVSKKDQKHLALVTEFGNGELSYTLKD  479
             LS  EKEKFQTEI NFQKD KAYLD+LG+DHIAFVSKKD KHLALVTEFGNGELSYTLKD
Sbjct  414   LSEKEKEKFQTEIENFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGELSYTLKD  473

Query  480   YGKKPDRALDRETKTTLQGNLKDDGVMFVNYSNFKYTNASKSPNEGIGATNGVSHLEANF  539
             YGKK D+ALD ETKTTLQG+LK DGVMFVNYSNFKYTNASKSPN G+G+TNGVSHLEANF
Sbjct  474   YGKKQDKALDGETKTTLQGSLKYDGVMFVNYSNFKYTNASKSPNKGLGTTNGVSHLEANF  533

Query  540   SKVAVFNLPDLNGLAVSSFARRNLEDKLAAKGLSGKESNKLIKDFLSSNKELLEKVLNFN  599
             SKVAVFNLP+LN LA++++ RR+LEDKL AKGLS +E+NKLIKDFL+SNKE++ KV NFN
Sbjct  534   SKVAVFNLPNLNNLAITNYIRRDLEDKLWAKGLSPQEANKLIKDFLNSNKEMVGKVSNFN  593

Query  600   KAVAEAKNTGNYDGVKKAQKDLEKSIRKRERLEKEITKQFESKSGNKNKMEAKAQANSQK  659
             KAVAEAKNTGNYD VKKAQKDLEKS+RKRE+LEKE++K++ES+++NKN+MEAKAQANSQK
Sbjct  594   KAVAEAKNTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQK  653

Query  660   DEIFKLINEGAYKEARIIAYAQNLKGIRRELSDRMGNINKNLKDFNQSFDALKSGKNKDF  719
             D IF LI++ A KEAR+ ++  NLKG+R ELSD++ NINKNLKDF +SFD LKSGKN+DF
Sbjct  654   DKIFALISQEASKEARVATFDPNLKGVRSELSDKLENINKNLKDFGKSFDELKSGKNNDF  713

Query  720   SKVEETLKALKSSVKDLNINPEWISKVENLNVALNEFKNGKNKDFSKVTQAKSDLENSIK  779
             SK EETLKALK SVKDL INPEWISK+ENLN ALN+FKNGKNKDFSKVTQAKSDLENSIK
Sbjct  714   SKAEETLKALKDSVKDLGINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIK  773

Query  780   DVHINQQITDKVDNLNQAVLVAKATGDFSRVEQALAGFKKFLTDQKNENFNVGKNSDLQ-  838
             DV INQ+ITDKVDNLNQAV   K TGDFS+VEQALA +K++       ++++GKNSDLQ 
Sbjct  774   DVIINQKITDKVDNLNQAVSEIKLTGDFSKVEQALAELKNL-------SLDLGKNSDLQK  826

Query  839   SvkngvngtlvgnglsvTEATTLTKKFSDIKKELNEK-FANFNKNSNGLKNSAEPIYAQV  897
             SVKNGVNGTLV+NGLS TEATTLTK+FSDI+KELNEK F+N N+N+NGLKN++EPIYAQV
Sbjct  827   SVKNGVNGTLVSNGLSKTEATTLTKNFSDIRKELNEKLFGNSNNNNNGLKNNTEPIYAQV  886

Query  898   NKKKTGQVASPEESIYTQVAKEVNEKINRLNEK--------------ASASKGVGNFSGA  943
             NKKKTGQ +SPEE+IY+QVAK V+ KI++LNE               ASA+KGVG FSGA
Sbjct  887   NKKKTGQATSPEEPIYAQVAKKVSAKIDQLNEATSAINRKIDRINKIASAGKGVGGFSGA  946

Query  944   GRLDSPEPIYATID---DLGGSSPLKRHAKVDDLSKVGLSREQELTQKIGNLNQAVSEAK  1000
             GR  SPEPIYATID      ++ PL+R A V+DLSKVGLSREQELT++IG+L+QAVSEAK
Sbjct  947   GRSASPEPIYATIDFDEANQAGFPLRRSAAVNDLSKVGLSREQELTRRIGDLSQAVSEAK  1006

Query  1001  AGSFGNLERTMDGLKDSTKKNVVNLWFEGARKVPISLQAKLDNYATNSHTRINSNVKNGT  1060
             +G FGNLE+ +D LKDSTKKN ++LW E+A++VP SLQAKLDNYATNSHTRINSNV++GT
Sbjct  1007  TGHFGNLEQKIDELKDSTKKNALKLWVESAKQVPTSLQAKLDNYATNSHTRINSNVQSGT  1066

Query  1061  INEKATIMLTQKNPEWLKLVNDKIVAHNVGSTPLSDYDKIGFNQKNMKDYSDSFKFSIKL  1120
             INEKAT MLTQKNPEWLKLVNDKIVAHNVGS+PLS YDKIGFNQKNMKDYSDSFKFS KL
Sbjct  1067  INEKATGMLTQKNPEWLKLVNDKIVAHNVGSAPLSAYDKIGFNQKNMKDYSDSFKFSTKL  1126

Query  1121  SNAVKNIKSGFVQCLTDCISAGSYSPKKA--EHGV----TKSGFQKS  1161
             +NAVK+IKS+FVQ LT+ +S+GSYS  KA  EHGV    TK+GFQKS
Sbjct  1127  NNAVKDIKSSFVQFLTNTFSTGSYSLMKANVEHGVKNTNTKGGFQKS  1173

34) cagA in NC_000921


> NC_017366_P1|24|G24|385215791|YP_005775747.1|Helicobacter_pylori_F32|+|32443..35964|cagA|HPF32_0523|cag 
pathogenicity island 
protein
Length=1173

 Score = 1385 bits (5256),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 925/1190 (78%), Positives = 1058/1190 (89%), Gaps = 40/1190 (3%)

Query  1     MTNEAINQQPQTE-AAFNPQQFINNLQVAFIKVDNVVASFDPNQKPIVDKNDRDNRQAFE  59
             MTNE+I+Q    + ++F PQ+FINNLQVAFIKVDN VASFDP+QKPIVDKND+DNRQAFE
Sbjct  1     MTNETIDQTTTPDQTGFVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDKDNRQAFE  60

Query  60    KISQLREEFANKAIKNPTKKNQYFSSFISKSNDLIDKDNLIDTGSSIKSFQKFGTQRYQI  119
             KISQLREE+ANKAIKNP+KKNQYFS FI+KSNDLI+KDNLI  +SS+ SF+KFG QRYQI
Sbjct  61    KISQLREEYANKAIKNPAKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQRYQI  120

Query  120   FMNWVSHQNDPSKINTQKIRGFMENIIQPPISDDKEKAEFLRSAKQAFAGIIIGNQIRSD  179
             F +WVS Q+DPSKINTQ+IR FMEN+IQPPISDDKEKAEFLRSAKQ+FAGIIIGNQIRSD
Sbjct  121   FTSWVSLQKDPSKINTQQIRNFMENVIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSD  180

Query  180   QKFMGVFDESLKERQEAEKNGEPNGDPTGGDWLDIFLSFVFNKKQSSDLKETLNQEPVPH  239
             +KFMGVFDESLK RQEAEKN+EP    +GGDWLDIFLSFVFNKKQSSDLKETLNQEP P+
Sbjct  181   EKFMGVFDESLKARQEAEKNAEP----AGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPD  236

Query  240   VQPDVATTTTDIQSLPPEARDLLDERGNFSKFTLGDMNMLDVEGVADIDPNYKFNQLLIH  299
              + ++ATTTTDIQ+LPPEARDLLDERGNF KFTLGD++MLDVEGVAD DPNYKFNQLLIH
Sbjct  237   FEQNLATTTTDIQGLPPEARDLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIH  296

Query  300   NNALSSVLMGSHNGIEPEKVSLLYGNNGGPEARHDWNATVGYKNQRGDNVATLINVHMKN  359
             NNALSS+LMGSH+ IEPEKVSLLYG+NGGPEARHDWNATVGYKNQ+G+NVATLIN H++N
Sbjct  297   NNALSSMLMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLNN  356

Query  360   GSGLVIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKVDFMEFLAQNNAKLDNLSK  419
             GSGL+IAG E GI+NPSFYLYKEDQLTG ++ALSQEEIQNKVDFMEFLAQNNAKLDNLS 
Sbjct  357   GSGLIIAGNEDGIKNPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSE  416

Query  420   KEKEKFQNEIEDFQKDSKAYLDALGNDHIAFVSKKDKKHLALVAEFGNGELSYTLKDYGK  479
             KEKEKFQ EIE+FQKD KAYLDALGNDHIAFVSKKD KHLALV+EFGNGELSYTLKDYGK
Sbjct  417   KEKEKFQTEIENFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGELSYTLKDYGK  476

Query  480   KADKALDREAKTTLQGSLKHDGVMFVDYSNFKYTNASKSPDKGVGATNGVSHLEAGFSKV  539
             K DKALD E+KTTLQGSLK DGVMFV+YSNFKYTNASKSP+KG+G+TNGVSHLEA FSKV
Sbjct  477   KQDKALDGETKTTLQGSLKYDGVMFVNYSNFKYTNASKSPNKGLGTTNGVSHLEANFSKV  536

Query  540   AVFNLPNLNNLAITSVVRQDLEDKLIAKGLSPQEANKLVKDFLSSNKELVGKALNFNKAV  599
             AVFNLPNLNNLAIT+ +R+DLEDKL AKGLSPQEANKL+KDFL+SNKE+VGK  NFNKAV
Sbjct  537   AVFNLPNLNNLAITNYIRRDLEDKLWAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAV  596

Query  600   AEAKNTGNYDEVKQAQkdlekslkkrerlekdVAKNLESKSGNKNKMEAKSQANSQKDEI  659
             AEAKNTGNYDEVK+AQKDLEKSL+KRE+LEK+VAK+LES+++NKN+MEAK+QANSQKD I
Sbjct  597   AEAKNTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKI  656

Query  660   FALINKEANRDARAIAYAQNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKA  719
             FALI++EA+++AR  ++  NLKG++ ELSDKLENINK+LKDF+KSFDE+K+GKN+DFSKA
Sbjct  657   FALISQEASKEARVATFDPNLKGVRSELSDKLENINKNLKDFGKSFDELKSGKNNDFSKA  716

Query  720   EETLKALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSIKDVI  779
             EETLKALK+SVKDLGINPEWISK+ENLNAALN+FKNGKNKDFSKVTQAKSDLENSIKDVI
Sbjct  717   EETLKALKDSVKDLGINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVI  776

Query  780   INQKITDKVDNLNQAVSVAKATGDFSGVEQALADLKNFSKEQLAQQAQKNEDFNTGKNSA  839
             INQKITDKVDNLNQAVS  K TGDFS VEQALA+LKN+S             ++ GKNS 
Sbjct  777   INQKITDKVDNLNQAVSEIKLTGDFSKVEQALAELKNLS-------------LDLGKNSD  823

Query  840   LYQSVKngvngtlvgnglSKAEATTLSKNFSDIKKelnakl-------------------  880
             L +SVKNGVNGTLV+NGLSK+EATTL+KNFSDI+KELN KL                   
Sbjct  824   LQKSVKNGVNGTLVSNGLSKTEATTLTKNFSDIRKELNEKLFGNSNNNNNGLKNNTEPIY  883

Query  881   gnfnnnnnnglenSTEPIYTQVAKKVKAKIDRLDQIASGLGDVGQAASFLLKRHDKVDDL  940
             ++ N+++     ++ EPIY+QVAKKV AKID+L++ +S++    +  + +      V+++
Sbjct  884   AQVNKKKTGQATSPEEPIYAQVAKKVSAKIDQLNEATSAINRKIDRINKIASAGKGVGGF  943

Query  941   SKVGLSANHEPIYATID---DLGGPFPLKRHDKVDDLSKVGLSREQKLTQKIDNLNQAVS  997
             S  G SA+ EPIYATID      + FPL+R   V+DLSKVGLSREQ LT++I++L+QAVS
Sbjct  944   SGAGRSASPEPIYATIDFDEANQAGFPLRRSAAVNDLSKVGLSREQELTRRIGDLSQAVS  1003

Query  998   EAKASHFDNLDQMIDKLKDSTKKNVVNLYVESAKKVPTSLSAKLDNYATNSHTRINSNVK  1057
             EAK++HF+NL+Q ID LKDSTKKN ++L VESAK+VPTSL AKLDNYATNSHTRINSNV+
Sbjct  1004  EAKTGHFGNLEQKIDELKDSTKKNALKLWVESAKQVPTSLQAKLDNYATNSHTRINSNVQ  1063

Query  1058  NGTINEKATGMLTQKNSEWLKLVNDKIVAHNVGSAPLSAYDKIGFNQKNMKDYSDSFKFS  1117
             +GTINEKATGMLTQKN+EWLKLVNDKIVAHNVGSAPLSAYDKIGFNQKNMKDYSDSFKFS
Sbjct  1064  SGTINEKATGMLTQKNPEWLKLVNDKIVAHNVGSAPLSAYDKIGFNQKNMKDYSDSFKFS  1123

Query  1118  TRLSNAVKDIKSGFVQFLTNIFSMGSYSLMKASVEHGVKNTNTKGGFQKS  1167
             T+L+NAVKDIKS+FVQFLTN FS GSYSLMKA+VEHGVKNTNTKGGFQKS
Sbjct  1124  TKLNNAVKDIKSSFVQFLTNTFSTGSYSLMKANVEHGVKNTNTKGGFQKS  1173

35) HPV225_0552 in NC_017355


> NC_017366_P1|24|G24|385215791|YP_005775747.1|Helicobacter_pylori_F32|+|32443..35964|cagA|HPF32_0523|cag 
pathogenicity island 
protein
Length=1173

 Score = 1377 bits (5224),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 958/1193 (81%), Positives = 1069/1193 (90%), Gaps = 46/1193 (3%)

Query  1     MANETINQTKKPDQTPSQTAFNPQQFISNLQVAFIKLDSAVASFDPDQKPIVDKNDRDNR  60
             M+NETI+QT     TP QT+F PQ+FI+NLQVAFIK+D+AVASFDPDQKPIVDKND+DNR
Sbjct  1     MTNETIDQTT----TPDQTGFVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDKDNR  56

Query  61    QAFNVISQLREEYANKAIKNPTKKNQYFSDFIDKsndlinkdnlididssTKSFEKFGAQ  120
             QAF+ ISQLREEYANKAIKNP+KKNQYFSDFI+KSNDLINKDNLI +DSS  SF KFG Q
Sbjct  57    QAFEKISQLREEYANKAIKNPAKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQ  116

Query  121   RYQIFMNWVSHQKDPSKINTQKIRNFMENIIQPPISDDKEKAEFLRSAKQSFAGIIIGNQ  180
             RYQIF +WVS QKDPSKINTQ+IRNFMEN+IQPPISDDKEKAEFLRSAKQSFAGIIIGNQ
Sbjct  117   RYQIFTSWVSLQKDPSKINTQQIRNFMENVIQPPISDDKEKAEFLRSAKQSFAGIIIGNQ  176

Query  181   IRSDEKFMGVFDESLKERQEAEKNGEPAGGDWLDIFLSFVFNKEQSSDLKETLNQEPRPN  240
             IRSDEKFMGVFDESLK RQEAEKN+EPAGGDWLDIFLSFVFNK QSSDLKETLNQEPRP+
Sbjct  177   IRSDEKFMGVFDESLKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPD  236

Query  241   VEQNVASTPTHIQGLPPEARDLLDERGDFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIH  300
              EQN+A+T T+IQGLPPEARDLLDERG+F KFTLGD+EMLDVEGVAD DPNYKFNQLLIH
Sbjct  237   FEQNLATTTTDIQGLPPEARDLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIH  296

Query  301   NNALSSMLMGSHSSIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLKN  360
             NNALSSMLMGSHS+IEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHL+N
Sbjct  297   NNALSSMLMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLNN  356

Query  361   GSGLVIAGNGNGINNPSFYLYKTDQLTGLEQALSQEEIQNKVDFMELLAQNNARLDNLSE  420
             GSGL+IAGN +GI+NPSFYLYK DQLTGL QALSQEEIQNKVDFME+LAQNNA+LDNLSE
Sbjct  357   GSGLIIAGNEDGIKNPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSE  416

Query  421   EEKEKFQTEIGNFQKDPKAYLDSLGNDRIAFVSKKDQKHLALVTEFGNGELSYTLKDYGK  480
              EKEKFQTEI NFQKD KAYLD+LGND+IAFVSKKD KHLALVTEFGNGELSYTLKDYGK
Sbjct  417   KEKEKFQTEIENFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGELSYTLKDYGK  476

Query  481   KQDRALDRETKTTLQGNLKHDGVMFVNYSNFKYTNASKSPDEGIGATNGVSHLEANFSKV  540
             KQD+ALD ETKTTLQG+LK DGVMFVNYSNFKYTNASKSP+ G+G+TNGVSHLEANFSKV
Sbjct  477   KQDKALDGETKTTLQGSLKYDGVMFVNYSNFKYTNASKSPNKGLGTTNGVSHLEANFSKV  536

Query  541   AVFNLPDLNGLAISSFARRNLEDKLIAKGLPPKDANKIIKDFLNSNKELLEKALDFNKAV  600
             AVFNLP+LN LAI+++ RR+LEDKL AKGL+P++ANK+IKDFLNSNKE++ K  +FNKAV
Sbjct  537   AVFNLPNLNNLAITNYIRRDLEDKLWAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAV  596

Query  601   AEAKNTGNYDGVKKAQKDLEKSIRKRERLEQEITKKFENKSGNKNKMEAKVQANSQKDGI  660
             AEAKNTGNYD VKKAQKDLEKS+RKRE+LE+E++KK+E++++NKN+MEAK QANSQKD I
Sbjct  597   AEAKNTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKI  656

Query  661   FKLINEEAHKEARIAAYAQNLKGIRRELSDKIENINKNLKDFDKSFDALKSGKNKDFSKA  720
             F LI++EA KEAR+A++  NLKG+R ELSDK+ENINKNLKDF+KSFD LKSGKN+DFSKA
Sbjct  657   FALISQEASKEARVATFDPNLKGVRSELSDKLENINKNLKDFGKSFDELKSGKNNDFSKA  716

Query  721   EETLKALESSVKDLGINPEWISKVenlnaalnefenGKNKDFSKVTQAKSDLENSIKDVL  780
             EETLKAL  SVKDLGINPEWISK+ENLNAALN+F NGKNKDFSKVTQAKSDLENSIKDV+
Sbjct  717   EETLKALKDSVKDLGINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVI  776

Query  781   INQEITDKVDNLNQAVLTAKAIGDFSGVEQALAELKNFSTN--QKSDLQKSVKngvngtl  838
             INQ ITDKVDNLNQAV   K  GDFS VEQALAELKN+S +  ++SDLQKSVKNGVNGTL
Sbjct  777   INQKITDKVDNLNQAVSEIKLTGDFSKVEQALAELKNLSLDLGKNSDLQKSVKNGVNGTL  836

Query  839   vgnglSKTEATTLTKKFSDIkkelnekf-anfnnnnnglknSTEPIYAKVNKKKTGQVAS  897
             V+NGLSKTEATTLTK+FSDI+KELNEK+ +N NNNNNGLKN+TEPIYA+VNKKKTGQ +S
Sbjct  837   VSNGLSKTEATTLTKNFSDIRKELNEKLFGNSNNNNNGLKNNTEPIYAQVNKKKTGQATS  896

Query  898   PEESIYTQVAKQVNAKIDQL--------------NKIASASKGVGDFSGLGQSDSSEPIY  943
             PEE+IY+QVAK+V+AKIDQL              NKIASA+KGVG+FSG G+S S+EPIY
Sbjct  897   PEEPIYAQVAKKVSAKIDQLNEATSAINRKIDRINKIASAGKGVGGFSGAGRSASPEPIY  956

Query  944   ATID---DLGGPFPLSRLGRSDSPEPIYATIDLSKVGLSREQELTQKIGNLTQKIGNLNQ  1000
             ATID      + FPL R +         A  DLSKVGLSREQELT++IG+L+       Q
Sbjct  957   ATIDFDEANQAGFPLRRSA---------AVNDLSKVGLSREQELTRRIGDLS-------Q  1000

Query  1001  AVSEAKAGFFGNLEQTMDRLKDSTKKNVVNLWVESVKVVPASSQAKLDNYATNSHTRINS  1060
             AVSEAK+G FGNLEQ +D LKDSTKKN ++LWVES K VP+S QAKLDNYATNSHTRINS
Sbjct  1001  AVSEAKTGHFGNLEQKIDELKDSTKKNALKLWVESAKQVPTSLQAKLDNYATNSHTRINS  1060

Query  1061  NVKNGTINEKAIGMLTQKNPEWLKLVNDKIVAHNVGSAPLSAYDKIGFNQKNMKDYSDSF  1120
             NV++GTINEKA GMLTQKNPEWLKLVNDKIVAHNVGSAPLSAYDKIGFNQKNMKDYSDSF
Sbjct  1061  NVQSGTINEKATGMLTQKNPEWLKLVNDKIVAHNVGSAPLSAYDKIGFNQKNMKDYSDSF  1120

Query  1121  KFSTKLNNAVKNIKSGFKQLLTDCISAGSYSPKKA--EYGV----TKSGFQKS  1167
             KFSTKLNNAVK+IKS+F Q+LT+ +S+GSYS  KA  E GV    TK+GFQKS
Sbjct  1121  KFSTKLNNAVKDIKSSFVQFLTNTFSTGSYSLMKANVEHGVKNTNTKGGFQKS  1173

36) hp2017_0529 in NC_017374


> NC_017366_P1|24|G24|385215791|YP_005775747.1|Helicobacter_pylori_F32|+|32443..35964|cagA|HPF32_0523|cag 
pathogenicity island 
protein
Length=1173

 Score = 1377 bits (5224),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 911/1190 (77%), Positives = 1061/1190 (90%), Gaps = 23/1190 (1%)

Query  1     MTNETIDQQPQTE-AAFNPQQFINNLQVAFLKVDNAIASFDPDQKPIVDKNDRDNRQAFD  59
             MTNETIDQ    + ++F PQ+FINNLQVAF+KVDNA+ASFDPDQKPIVDKND+DNRQAF+
Sbjct  1     MTNETIDQTTTPDQTGFVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDKDNRQAFE  60

Query  60    GISQLREEYSNKAIKNPTKKNQYFSDFINKSNDLINKDNLIDVESSTKSFQKFGDQRYRI  119
              ISQLREEY+NKAIKNP+KKNQYFSDFINKSNDLINKDNLI V+SS  SF+KFGDQRY+I
Sbjct  61    KISQLREEYANKAIKNPAKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQRYQI  120

Query  120   FTSWVSHQNDPSKINTRSIRNFMEHAIQPPIPDDKEKAEFLKSAKQSFAGIIIGNQIRTD  179
             FTSWVS Q+DPSKINT+ IRNFME+ IQPPI+DDKEKAEFL+SAKQSFAGIIIGNQIR+D
Sbjct  121   FTSWVSLQKDPSKINTQQIRNFMENVIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSD  180

Query  180   QKFMGVFDESLKERQEAEKNGGSTGGDWLDIFLSFIFDKKQSSDVKEAINQEPVPHVQPD  239
             +KFMGVFDESLK RQEAEKN+ ++GGDWLDIFLSF+F+KKQSSD+KE++NQEP P+ + +
Sbjct  181   EKFMGVFDESLKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPDFEQN  240

Query  240   IATSTTHIQGLPPESRDLLDERGNFSKFTLGDMEMLDVEGVADMDPNYKFNQLLIHNNAL  299
             +AT+TT+IQGLPPE+RDLLDERGNF KFTLGD+EMLDVEGVAD DPNYKFNQLLIHNNAL
Sbjct  241   LATTTTDIQGLPPEARDLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIHNNAL  300

Query  300   SSVLMGSHDGIEPEKVSLLYAGNGGFGDKHDWNATVGYKDQQGNNVATIINVHMKNGSGL  359
             SS+LMGSH  IEPEKVSLLY++NGG   +HDWNATVGYK+QQGNNVAT+IN H++NGSGL
Sbjct  301   SSMLMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLNNGSGL  360

Query  360   IIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKIDFMEFLAQNNAkldslsekeke  419
             IIAG E GI+NPSFYLYKEDQLTG ++ALSQEEIQNK+DFMEFLAQNNAKLD+LSEKEKE
Sbjct  361   IIAGNEDGIKNPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSEKEKE  420

Query  420   kfkneikdfQKDSKPYLDALGNDRIAFVSKKDPKHSALITEFNKGDLSYTLKDYGKKADK  479
             KF+ EI +FQKD K+YLDALGND+IAFVSKKDPKH AL+TEF +G+LSYTLKDYGKK DK
Sbjct  421   KFQTEIENFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGELSYTLKDYGKKQDK  480

Query  480   ALDREKNVTLQGNLKHDGVMFVNYSNFKYTNASKSPNKGVGVTNGVSHLEAGFSKVAVFN  539
             ALD E + TLQG+LK DGVMFVNYSNFKYTNASKSPNKG+G TNGVSHLEA FSKVAVFN
Sbjct  481   ALDGETKTTLQGSLKYDGVMFVNYSNFKYTNASKSPNKGLGTTNGVSHLEANFSKVAVFN  540

Query  540   LPNLNNLAITSVVRRDLEDKLIAKGLSPQEANKLVKDFLSSNKELVGKALNFNKAVAEAK  599
             LPNLNNLAIT+ +RRDLEDKL AKGLSPQEANKL+KDFL+SNKE+VGK  NFNKAVAEAK
Sbjct  541   LPNLNNLAITNYIRRDLEDKLWAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAVAEAK  600

Query  600   NTGNYDEVKRAQKDLEKSLKKREHLEKDVAKNLESKSGNKNKMEVKSQANSQKDEIFALI  659
             NTGNYDEVK+AQKDLEKSL+KREHLEK+VAK+LES+++NKN+ME K+QANSQKD IFALI
Sbjct  601   NTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKIFALI  660

Query  660   NKEANRDARAIAYAQNLKDIKRELSDKLENISKDLKDFSKSFDEFKNGKSKDFSKVEETL  719
             ++EA+++AR  ++  NLK+++ ELSDKLENI+K+LKDF+KSFDE+K+GK++DFSK EETL
Sbjct  661   SQEASKEARVATFDPNLKGVRSELSDKLENINKNLKDFGKSFDELKSGKNNDFSKAEETL  720

Query  720   KALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSIKDVIINQK  779
             KALK+SVKDLGINPEWISK+ENLNAALN+FKNGKNKDFSKVTQAKSDLENSIKDVIINQK
Sbjct  721   KALKDSVKDLGINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVIINQK  780

Query  780   ITDKVDNLNQAVSMAKIAGNFSGVEQALADLKNFSKEQLAQQAQKNESFNVGK-SEIYQS  838
             ITDKVDNLNQAVS  K++G+FS VEQALA+LKN+             S+++GK S++ +S
Sbjct  781   ITDKVDNLNQAVSEIKLTGDFSKVEQALAELKNL-------------SLDLGKNSDLQKS  827

Query  839   vkngvngtlvgnglsgIEATALAKNFSDIkkelnekfknfnnnnnglkngkDKGPEEPIY  898
             VKNGVNGTLV+NGLS  EAT+L+KNFSDI       +++    N+  +N   K   EPIY
Sbjct  828   VKNGVNGTLVSNGLSKTEATTLTKNFSDI----RKELNEKLFGNSNNNNNGLKNNTEPIY  883

Query  899   AQVNKKKTGQVASPEEPIYAQVAKKVTQKIDQLNQAASGFGGVGQAGFPLKRHDK-VEDL  957
             AQVNKKKTGQ +SPEEPIYAQVAKKV+ KIDQLN+A+S++    +    +   +K V ++
Sbjct  884   AQVNKKKTGQATSPEEPIYAQVAKKVSAKIDQLNEATSAINRKIDRINKIASAGKGVGGF  943

Query  958   SKVGRSVSPEPIYATID---DLGGSFPLRRSAAVDDLSKVGRSREQELTQKIDNLSQAVS  1014
             S  GRS SPEPIYATID      ++FPLRRSAAV+DLSKVG SREQELT++I++LSQAVS
Sbjct  944   SGAGRSASPEPIYATIDFDEANQAGFPLRRSAAVNDLSKVGLSREQELTRRIGDLSQAVS  1003

Query  1015  EAKAGFFGNLERTIDKLKDSTKNNPVNLWAENAKKVPASLSAKLDNYATNSHTRINSNIQ  1074
             EAK+G FGNLE+ ID LKDSTK+N+++LW E+AK+VP+SL AKLDNYATNSHTRINSN+Q
Sbjct  1004  EAKTGHFGNLEQKIDELKDSTKKNALKLWVESAKQVPTSLQAKLDNYATNSHTRINSNVQ  1063

Query  1075  NGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFS  1134
             +G+INEKATGMLTQKNPEWLKLVNDKIVAHNVGS PLS YDKIGFNQKNMKDYSDSFKFS
Sbjct  1064  SGTINEKATGMLTQKNPEWLKLVNDKIVAHNVGSAPLSAYDKIGFNQKNMKDYSDSFKFS  1123

Query  1135  TKLNNTVKDVKSGFTQFLANAFSTGYYSLARENAEHGIKNANTKGGFQKS  1184
             TKLNN+VKD+KS+F QFL+N+FSTG YSL + N EHG+KN+NTKGGFQKS
Sbjct  1124  TKLNNAVKDIKSSFVQFLTNTFSTGSYSLMKANVEHGVKNTNTKGGFQKS  1173

37) hp2018_0531 in NC_017381


> NC_017366_P1|24|G24|385215791|YP_005775747.1|Helicobacter_pylori_F32|+|32443..35964|cagA|HPF32_0523|cag 
pathogenicity island 
protein
Length=1173

 Score = 1377 bits (5224),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 911/1190 (77%), Positives = 1061/1190 (90%), Gaps = 23/1190 (1%)

Query  1     MTNETIDQQPQTE-AAFNPQQFINNLQVAFLKVDNAIASFDPDQKPIVDKNDRDNRQAFD  59
             MTNETIDQ    + ++F PQ+FINNLQVAF+KVDNA+ASFDPDQKPIVDKND+DNRQAF+
Sbjct  1     MTNETIDQTTTPDQTGFVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDKDNRQAFE  60

Query  60    GISQLREEYSNKAIKNPTKKNQYFSDFINKSNDLINKDNLIDVESSTKSFQKFGDQRYRI  119
              ISQLREEY+NKAIKNP+KKNQYFSDFINKSNDLINKDNLI V+SS  SF+KFGDQRY+I
Sbjct  61    KISQLREEYANKAIKNPAKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQRYQI  120

Query  120   FTSWVSHQNDPSKINTRSIRNFMEHAIQPPIPDDKEKAEFLKSAKQSFAGIIIGNQIRTD  179
             FTSWVS Q+DPSKINT+ IRNFME+ IQPPI+DDKEKAEFL+SAKQSFAGIIIGNQIR+D
Sbjct  121   FTSWVSLQKDPSKINTQQIRNFMENVIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSD  180

Query  180   QKFMGVFDESLKERQEAEKNGGSTGGDWLDIFLSFIFDKKQSSDVKEAINQEPVPHVQPD  239
             +KFMGVFDESLK RQEAEKN+ ++GGDWLDIFLSF+F+KKQSSD+KE++NQEP P+ + +
Sbjct  181   EKFMGVFDESLKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPDFEQN  240

Query  240   IATSTTHIQGLPPESRDLLDERGNFSKFTLGDMEMLDVEGVADMDPNYKFNQLLIHNNAL  299
             +AT+TT+IQGLPPE+RDLLDERGNF KFTLGD+EMLDVEGVAD DPNYKFNQLLIHNNAL
Sbjct  241   LATTTTDIQGLPPEARDLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIHNNAL  300

Query  300   SSVLMGSHDGIEPEKVSLLYAGNGGFGDKHDWNATVGYKDQQGNNVATIINVHMKNGSGL  359
             SS+LMGSH  IEPEKVSLLY++NGG   +HDWNATVGYK+QQGNNVAT+IN H++NGSGL
Sbjct  301   SSMLMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLNNGSGL  360

Query  360   IIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKIDFMEFLAQNNAkldslsekeke  419
             IIAG E GI+NPSFYLYKEDQLTG ++ALSQEEIQNK+DFMEFLAQNNAKLD+LSEKEKE
Sbjct  361   IIAGNEDGIKNPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSEKEKE  420

Query  420   kfkneikdfQKDSKPYLDALGNDRIAFVSKKDPKHSALITEFNKGDLSYTLKDYGKKADK  479
             KF+ EI +FQKD K+YLDALGND+IAFVSKKDPKH AL+TEF +G+LSYTLKDYGKK DK
Sbjct  421   KFQTEIENFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGELSYTLKDYGKKQDK  480

Query  480   ALDREKNVTLQGNLKHDGVMFVNYSNFKYTNASKSPNKGVGVTNGVSHLEAGFSKVAVFN  539
             ALD E + TLQG+LK DGVMFVNYSNFKYTNASKSPNKG+G TNGVSHLEA FSKVAVFN
Sbjct  481   ALDGETKTTLQGSLKYDGVMFVNYSNFKYTNASKSPNKGLGTTNGVSHLEANFSKVAVFN  540

Query  540   LPNLNNLAITSVVRRDLEDKLIAKGLSPQEANKLVKDFLSSNKELVGKALNFNKAVAEAK  599
             LPNLNNLAIT+ +RRDLEDKL AKGLSPQEANKL+KDFL+SNKE+VGK  NFNKAVAEAK
Sbjct  541   LPNLNNLAITNYIRRDLEDKLWAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAVAEAK  600

Query  600   NTGNYDEVKRAQKDLEKSLKKREHLEKDVAKNLESKSGNKNKMEVKSQANSQKDEIFALI  659
             NTGNYDEVK+AQKDLEKSL+KREHLEK+VAK+LES+++NKN+ME K+QANSQKD IFALI
Sbjct  601   NTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKIFALI  660

Query  660   NKEANRDARAIAYAQNLKDIKRELSDKLENISKDLKDFSKSFDEFKNGKSKDFSKVEETL  719
             ++EA+++AR  ++  NLK+++ ELSDKLENI+K+LKDF+KSFDE+K+GK++DFSK EETL
Sbjct  661   SQEASKEARVATFDPNLKGVRSELSDKLENINKNLKDFGKSFDELKSGKNNDFSKAEETL  720

Query  720   KALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSIKDVIINQK  779
             KALK+SVKDLGINPEWISK+ENLNAALN+FKNGKNKDFSKVTQAKSDLENSIKDVIINQK
Sbjct  721   KALKDSVKDLGINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVIINQK  780

Query  780   ITDKVDNLNQAVSMAKIAGNFSGVEQALADLKNFSKEQLAQQAQKNESFNVGK-SEIYQS  838
             ITDKVDNLNQAVS  K++G+FS VEQALA+LKN+             S+++GK S++ +S
Sbjct  781   ITDKVDNLNQAVSEIKLTGDFSKVEQALAELKNL-------------SLDLGKNSDLQKS  827

Query  839   vkngvngtlvgnglsgIEATALAKNFSDIkkelnekfknfnnnnnglkngkDKGPEEPIY  898
             VKNGVNGTLV+NGLS  EAT+L+KNFSDI       +++    N+  +N   K   EPIY
Sbjct  828   VKNGVNGTLVSNGLSKTEATTLTKNFSDI----RKELNEKLFGNSNNNNNGLKNNTEPIY  883

Query  899   AQVNKKKTGQVASPEEPIYAQVAKKVTQKIDQLNQAASGFGGVGQAGFPLKRHDK-VEDL  957
             AQVNKKKTGQ +SPEEPIYAQVAKKV+ KIDQLN+A+S++    +    +   +K V ++
Sbjct  884   AQVNKKKTGQATSPEEPIYAQVAKKVSAKIDQLNEATSAINRKIDRINKIASAGKGVGGF  943

Query  958   SKVGRSVSPEPIYATID---DLGGSFPLRRSAAVDDLSKVGRSREQELTQKIDNLSQAVS  1014
             S  GRS SPEPIYATID      ++FPLRRSAAV+DLSKVG SREQELT++I++LSQAVS
Sbjct  944   SGAGRSASPEPIYATIDFDEANQAGFPLRRSAAVNDLSKVGLSREQELTRRIGDLSQAVS  1003

Query  1015  EAKAGFFGNLERTIDKLKDSTKNNPVNLWAENAKKVPASLSAKLDNYATNSHTRINSNIQ  1074
             EAK+G FGNLE+ ID LKDSTK+N+++LW E+AK+VP+SL AKLDNYATNSHTRINSN+Q
Sbjct  1004  EAKTGHFGNLEQKIDELKDSTKKNALKLWVESAKQVPTSLQAKLDNYATNSHTRINSNVQ  1063

Query  1075  NGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFS  1134
             +G+INEKATGMLTQKNPEWLKLVNDKIVAHNVGS PLS YDKIGFNQKNMKDYSDSFKFS
Sbjct  1064  SGTINEKATGMLTQKNPEWLKLVNDKIVAHNVGSAPLSAYDKIGFNQKNMKDYSDSFKFS  1123

Query  1135  TKLNNTVKDVKSGFTQFLANAFSTGYYSLARENAEHGIKNANTKGGFQKS  1184
             TKLNN+VKD+KS+F QFL+N+FSTG YSL + N EHG+KN+NTKGGFQKS
Sbjct  1124  TKLNNAVKDIKSSFVQFLTNTFSTGSYSLMKANVEHGVKNTNTKGGFQKS  1173

38) cagA in NC_017357


> NC_017366_P1|24|G24|385215791|YP_005775747.1|Helicobacter_pylori_F32|+|32443..35964|cagA|HPF32_0523|cag 
pathogenicity island 
protein
Length=1173

 Score = 1376 bits (5223),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 911/1190 (77%), Positives = 1061/1190 (90%), Gaps = 23/1190 (1%)

Query  1     MTNETIDQQPQTE-AAFNPQQFINNLQVAFLKVDNAIASFDPDQKPIVDKNDRDNRQAFD  59
             MTNETIDQ    + ++F PQ+FINNLQVAF+KVDNA+ASFDPDQKPIVDKND+DNRQAF+
Sbjct  1     MTNETIDQTTTPDQTGFVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDKDNRQAFE  60

Query  60    GISQLREEYSNKAIKNPTKKNQYFSDFINKSSDLINKDNLIDVESSTKSFQKFGDQRYRI  119
              ISQLREEY+NKAIKNP+KKNQYFSDFINKS+DLINKDNLI V+SS  SF+KFGDQRY+I
Sbjct  61    KISQLREEYANKAIKNPAKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQRYQI  120

Query  120   FTSWVSHQNDPSKINTRSIRNFMEHAIQPPIPDDKEKAEFLKSAKQSFAGIIIGNQIRTD  179
             FTSWVS Q+DPSKINT+ IRNFME+ IQPPI+DDKEKAEFL+SAKQSFAGIIIGNQIR+D
Sbjct  121   FTSWVSLQKDPSKINTQQIRNFMENVIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSD  180

Query  180   QKFMGVFDESLKERQEAEKNGGSTGGDWLDIFLSFIFDKKQSSDVKEAINQEPVPHVQPD  239
             +KFMGVFDESLK RQEAEKN+ ++GGDWLDIFLSF+F+KKQSSD+KE++NQEP P+ + +
Sbjct  181   EKFMGVFDESLKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPDFEQN  240

Query  240   IATSTTHIQGLPPESRDLLDERGNFSKFTLGDMEMLDVEGVADMDPNYKFNQLLIHNNAL  299
             +AT+TT+IQGLPPE+RDLLDERGNF KFTLGD+EMLDVEGVAD DPNYKFNQLLIHNNAL
Sbjct  241   LATTTTDIQGLPPEARDLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIHNNAL  300

Query  300   SSVLMGSHDGIEPEKVSLLYAGNGGFGDKHDWNATVGYKDQQGNNVATIINVHMKNGSGL  359
             SS+LMGSH  IEPEKVSLLY++NGG   +HDWNATVGYK+QQGNNVAT+IN H++NGSGL
Sbjct  301   SSMLMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLNNGSGL  360

Query  360   IIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKIDFMEFLAQNNAkldslsekeke  419
             IIAG E GI+NPSFYLYKEDQLTG ++ALSQEEIQNK+DFMEFLAQNNAKLD+LSEKEKE
Sbjct  361   IIAGNEDGIKNPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSEKEKE  420

Query  420   kfkneikdfQKDSKPYLDALGNDRIAFVSKKDPKHSALITEFNKGDLSYTLKDYGKKADK  479
             KF+ EI +FQKD K+YLDALGND+IAFVSKKDPKH AL+TEF +G+LSYTLKDYGKK DK
Sbjct  421   KFQTEIENFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGELSYTLKDYGKKQDK  480

Query  480   ALDREKNVTLQGNLKHDGVMFVNYSNFKYTNASKSPNKGVGVTNGVSHLEAGFSKVAVFN  539
             ALD E + TLQG+LK DGVMFVNYSNFKYTNASKSPNKG+G TNGVSHLEA FSKVAVFN
Sbjct  481   ALDGETKTTLQGSLKYDGVMFVNYSNFKYTNASKSPNKGLGTTNGVSHLEANFSKVAVFN  540

Query  540   LPNLNNLAITSVVRRDLEDKLIAKGLSPQEANKLVKDFLSSNKELVGKALNFNKAVAEAK  599
             LPNLNNLAIT+ +RRDLEDKL AKGLSPQEANKL+KDFL+SNKE+VGK  NFNKAVAEAK
Sbjct  541   LPNLNNLAITNYIRRDLEDKLWAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAVAEAK  600

Query  600   NTGNYDEVKRAQKDLEKSLKKREHLEKDVAKNLESKSGNKNKMEVKSQANSQKDEIFALI  659
             NTGNYDEVK+AQKDLEKSL+KREHLEK+VAK+LES+++NKN+ME K+QANSQKD IFALI
Sbjct  601   NTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKIFALI  660

Query  660   NKEANRDARAIAYAQNLKDIKRELSDKLENISKDLKDFSKSFDEFKNGKSKDFSKVEETL  719
             ++EA+++AR  ++  NLK+++ ELSDKLENI+K+LKDF+KSFDE+K+GK++DFSK EETL
Sbjct  661   SQEASKEARVATFDPNLKGVRSELSDKLENINKNLKDFGKSFDELKSGKNNDFSKAEETL  720

Query  720   KALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSIKDVIINQK  779
             KALK+SVKDLGINPEWISK+ENLNAALN+FKNGKNKDFSKVTQAKSDLENSIKDVIINQK
Sbjct  721   KALKDSVKDLGINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVIINQK  780

Query  780   ITDKVDNLNQAVSMAKIAGNFSGVEQALADLKNFSKEQLAQQAQKNESFNVGK-SEIYQS  838
             ITDKVDNLNQAVS  K++G+FS VEQALA+LKN+             S+++GK S++ +S
Sbjct  781   ITDKVDNLNQAVSEIKLTGDFSKVEQALAELKNL-------------SLDLGKNSDLQKS  827

Query  839   vkngvngtlvgnglsgIEATALAKNFSDIkkelnekfknfnnnnnglkngkDKGPEEPIY  898
             VKNGVNGTLV+NGLS  EAT+L+KNFSDI       +++    N+  +N   K   EPIY
Sbjct  828   VKNGVNGTLVSNGLSKTEATTLTKNFSDI----RKELNEKLFGNSNNNNNGLKNNTEPIY  883

Query  899   AQVNKKKTGQVASPEEPIYAQVAKKVTQKIDQLNQAASGFGGVGQAGFPLKRHDK-VEDL  957
             AQVNKKKTGQ +SPEEPIYAQVAKKV+ KIDQLN+A+S++    +    +   +K V ++
Sbjct  884   AQVNKKKTGQATSPEEPIYAQVAKKVSAKIDQLNEATSAINRKIDRINKIASAGKGVGGF  943

Query  958   SKVGRSVSPEPIYATID---DLGGSFPLRRSAAVDDLSKVGRSREQELTQKIDNLSQAVS  1014
             S  GRS SPEPIYATID      ++FPLRRSAAV+DLSKVG SREQELT++I++LSQAVS
Sbjct  944   SGAGRSASPEPIYATIDFDEANQAGFPLRRSAAVNDLSKVGLSREQELTRRIGDLSQAVS  1003

Query  1015  EAKAGFFGNLERTIDKLKDSTKNNPVNLWAENAKKVPASLSAKLDNYATNSHTRINSNIQ  1074
             EAK+G FGNLE+ ID LKDSTK+N+++LW E+AK+VP+SL AKLDNYATNSHTRINSN+Q
Sbjct  1004  EAKTGHFGNLEQKIDELKDSTKKNALKLWVESAKQVPTSLQAKLDNYATNSHTRINSNVQ  1063

Query  1075  NGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFS  1134
             +G+INEKATGMLTQKNPEWLKLVNDKIVAHNVGS PLS YDKIGFNQKNMKDYSDSFKFS
Sbjct  1064  SGTINEKATGMLTQKNPEWLKLVNDKIVAHNVGSAPLSAYDKIGFNQKNMKDYSDSFKFS  1123

Query  1135  TKLNNAVKDVKSGFTQFLANAFSTGYYSLARENAEHGIKNANTKGGFQKS  1184
             TKLNNAVKD+KS+F QFL+N+FSTG YSL + N EHG+KN+NTKGGFQKS
Sbjct  1124  TKLNNAVKDIKSSFVQFLTNTFSTGSYSLMKANVEHGVKNTNTKGGFQKS  1173

39) cagA in NC_014256


> NC_017366_P1|24|G24|385215791|YP_005775747.1|Helicobacter_pylori_F32|+|32443..35964|cagA|HPF32_0523|cag 
pathogenicity island 
protein
Length=1173

 Score = 1373 bits (5212),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 961/1190 (81%), Positives = 1079/1190 (91%), Gaps = 23/1190 (1%)

Query  1     MTNETINQQPQTE-AAFNPQQFINNLQVAFIKVDNAVASFDPDQKPIVDKNDRDNRQAFE  59
             MTNETI+Q    + ++F PQ+FINNLQVAFIKVDNAVASFDPDQKPIVDKND+DNRQAFE
Sbjct  1     MTNETIDQTTTPDQTGFVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDKDNRQAFE  60

Query  60    KISQLREKFANKAIKNPTKKNQYFSNFISKSSDLINKDGLIDTGSSIKSFQKFGTQRYQI  119
             KISQLRE +ANKAIKNP+KKNQYFS+FI+KS+DLINKD LI  +SS+ SF+KFG QRYQI
Sbjct  61    KISQLREEYANKAIKNPAKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQRYQI  120

Query  120   FMNWVSHQKDPSQINTQKIRGFMENIIQPPISDDKEKAEFLRSAKQALAGIIIRNQIRSD  179
             F +WVS QKDPS+INTQ+IR FMEN+IQPPISDDKEKAEFLRSAKQ++AGIII NQIRSD
Sbjct  121   FTSWVSLQKDPSKINTQQIRNFMENVIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSD  180

Query  180   QKFMGVFDESLKERQEAEKNGEPNGDPTGGDWFDIFLSFVFNKKQSSDLKETLNQEPVPH  239
             +KFMGVFDESLK RQEAEKN+EP    +GGDW+DIFLSFVFNKKQSSDLKETLNQEP P+
Sbjct  181   EKFMGVFDESLKARQEAEKNAEP----AGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPD  236

Query  240   VQPDVATTTTDIQSLPPESRDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLVH  299
              + ++ATTTTDIQ+LPPE+RDLLDERGNF KFTLGD+EMLDVEGVAD DPNYKFNQLL+H
Sbjct  237   FEQNLATTTTDIQGLPPEARDLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIH  296

Query  300   NNALSSVLMGSHDGIEPEKVSLLYGNNGGPEARHDWNATVGHKNQQGNNVATLINVHMKN  359
             NNALSS+LMGSH  IEPEKVSLLYG+NGGPEARHDWNATVG KNQQGNNVATLIN H++N
Sbjct  297   NNALSSMLMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLNN  356

Query  360   GSGLVIAGGEKGVNNPSFYLYKEDQLTGLKQALSQKEIQNKVDFMEFLAQNNAKLDNLSK  419
             GSGL+IAG E G++NPSFYLYKEDQLTGLKQALSQ EIQNKVDFMEFLAQNNAKLDNLS 
Sbjct  357   GSGLIIAGNEDGIKNPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSE  416

Query  420   KEKEKFQNEIEDFQKDHKAYLDALGNDHIAFVSKKDKKHLALVTEFGSGDLSYTLKDYGK  479
             KEKEKFQ EIE+FQKD+KAYLDALGNDHIAFVSKKD KHLALVTEFG+G+LSYTLKDYGK
Sbjct  417   KEKEKFQTEIENFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGELSYTLKDYGK  476

Query  480   KADKALDREIKTTLQGSLKHDGVMFVDYSNFKYTNASKSPDKGVGATNGVSHLEANLSKV  539
             K DKALD E KTTLQGSLK DGVMFV+YSNFKYTNASKSP+KG+G+TNGVSHLEAN+SKV
Sbjct  477   KQDKALDGETKTTLQGSLKYDGVMFVNYSNFKYTNASKSPNKGLGTTNGVSHLEANFSKV  536

Query  540   AVFNLPNLNNLAITSYIRRDLEEKLGAKGLSPQEANKLIKDFLNSNKELVGKVLNLNKAV  599
             AVFNLPNLNNLAIT+YIRRDLE+KL AKGLSPQEANKLIKDFLNSNKE+VGKV N+NKAV
Sbjct  537   AVFNLPNLNNLAITNYIRRDLEDKLWAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAV  596

Query  600   AEAKNTGNYDEVKKAQKNLEKSLrkrehlekevvkkleNRNDNKNRMEAKAQANSQKDKI  659
             AEAKNTGNYDEVKKAQK+LEKSLRKREHLEKEV KKLE+RNDNKNRMEAKAQANSQKDKI
Sbjct  597   AEAKNTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKI  656

Query  660   FAIINEEASKEARVAACVQKFKGIKMELSDKFENInknlkdfdksfddfkngknkdfskA  719
             FA+I++EASKEARVA+   ++KG++ ELSDK+ENINKNLKDF+KSFD++K+GKN+DFSKA
Sbjct  657   FALISQEASKEARVATFDPNLKGVRSELSDKLENINKNLKDFGKSFDELKSGKNNDFSKA  716

Query  720   EETLKALKGSVKDLGINPEWISKVENLNTALNDFKNGKNKDFSKVTQAKSDLENSIKDVI  779
             EETLKALK+SVKDLGINPEWISK+ENLN+ALNDFKNGKNKDFSKVTQAKSDLENSIKDVI
Sbjct  717   EETLKALKDSVKDLGINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVI  776

Query  780   INQKITDKVDNLNQAVSVAKATGDFSGVEQALADLKNFSKGQLAQQAQKNEDFNTGKNSE  839
             INQKITDKVDNLNQAVS  K TGDFS VEQALA+LKN+S             ++ GKNS+
Sbjct  777   INQKITDKVDNLNQAVSEIKLTGDFSKVEQALAELKNLS-------------LDLGKNSD  823

Query  840   LYQSvkngvngtlvgnglsgIEATALTKNFSDIkkelnekf-knfnnnnnglknSGEPIY  898
             L +SVKNGVNGTLV+NGLS  EAT+LTKNFSDI+KELNEK+  N NNNNNGLKN+ EPIY
Sbjct  824   LQKSVKNGVNGTLVSNGLSKTEATTLTKNFSDIRKELNEKLFGNSNNNNNGLKNNTEPIY  883

Query  899   AQVNKKKTGQVASPEEPIYTQVAKKVKAKIDQFNQVASGLG-GVGQAGFSLKGHTKVDDL  957
             AQVNKKKTGQ +SPEEPIY+QVAKKV AKIDQ+N+ +S++   +++      +   V+++
Sbjct  884   AQVNKKKTGQATSPEEPIYAQVAKKVSAKIDQLNEATSAINRKIDRINKIASAGKGVGGF  943

Query  958   SKVGRSVSPEPIYATID---DLGGPFPLKRHDKVDDLSKVGLSRNQELAQKIDNLNQAVS  1014
             S  GRS SPEPIYATID      + FPL+R   V+DLSKVGLSR+QEL+++I++L+QAVS
Sbjct  944   SGAGRSASPEPIYATIDFDEANQAGFPLRRSAAVNDLSKVGLSREQELTRRIGDLSQAVS  1003

Query  1015  EAKACHFDNLDQMIDKLKDSTKKNVMNLYVESAKKVPTSLSAKLDNYAINSHTRINSNVK  1074
             EAK+ HF+NL+Q ID LKDSTKKN ++L VESAK+VPTSL AKLDNYA NSHTRINSNV+
Sbjct  1004  EAKTGHFGNLEQKIDELKDSTKKNALKLWVESAKQVPTSLQAKLDNYATNSHTRINSNVQ  1063

Query  1075  NGTINEKVTGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFS  1134
             +GTINEK TGMLTQKNPEWLKLVNDKIVAHNVGS PLS YDKIGFNQKNMKDYSDSFKFS
Sbjct  1064  SGTINEKATGMLTQKNPEWLKLVNDKIVAHNVGSAPLSAYDKIGFNQKNMKDYSDSFKFS  1123

Query  1135  TRLSNAVKDIKSGFVQFLTNTFSMGSYSLMKASVEHGVKNTNTKGGFQKS  1184
             T+L+NAVKDIKS+FVQFLTNTFS GSYSLMKA+VEHGVKNTNTKGGFQKS
Sbjct  1124  TKLNNAVKDIKSSFVQFLTNTFSTGSYSLMKANVEHGVKNTNTKGGFQKS  1173

40) HPIN_04145 in NC_017372


> NC_017366_P1|24|G24|385215791|YP_005775747.1|Helicobacter_pylori_F32|+|32443..35964|cagA|HPF32_0523|cag 
pathogenicity island 
protein
Length=1173

 Score = 1372 bits (5208),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 924/1222 (76%), Positives = 1073/1222 (88%), Gaps = 57/1222 (4%)

Query  1     MTNETINQQPQAE-AAFNPRQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNRQAFD  59
             MTNETI+Q   ++ ++F P++FINNLQVAF+KVDNAVAS+DPDQKPIVDKND+DNRQAF+
Sbjct  1     MTNETIDQTTTPDQTGFVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDKDNRQAFE  60

Query  60    GISQLREEYSNKAIKNPTKKNQYFSDFINKSNDLINKDALIDVESSTKSFQKFGDQRYRI  119
              ISQLREEY+NKAIKNP+KKNQYFSDFINKSNDLINKD LI V+SS  SF+KFGDQRY+I
Sbjct  61    KISQLREEYANKAIKNPAKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQRYQI  120

Query  120   FTSWVSHQNDPSKINTRSIRNFMENIIQPPISDDKEKAEFLKSAKQSFAGIIIGNQIRTD  179
             FTSWVS Q+DPSKINT+ IRNFMEN+IQPPISDDKEKAEFL+SAKQSFAGIIIGNQIR+D
Sbjct  121   FTSWVSLQKDPSKINTQQIRNFMENVIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSD  180

Query  180   QKFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSFIFDKKQSSDVKEAINQEPVPHVQPD  239
             +KFMGVFDESLK RQEAEKN+ P+GGDWLDIFLSF+F+KKQSSD+KE++NQEP P+ + +
Sbjct  181   EKFMGVFDESLKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPDFEQN  240

Query  240   IATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNAL  299
             +ATTTTDIQGLPPEARDLLDERGNF KFTLGD+EMLDVEGVAD DPNYKFNQLLIHNNAL
Sbjct  241   LATTTTDIQGLPPEARDLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIHNNAL  300

Query  300   SSVLMGSHNGIEPEKVSLLYGDNGGPGARHDWNATVGYKDQQGNNVATIINVHMKNGSGL  359
             SS+LMGSH+ IEPEKVSLLYGDNGGP ARHDWNATVGYK+QQGNNVAT+IN H++NGSGL
Sbjct  301   SSMLMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLNNGSGL  360

Query  360   VIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIRNKIDFMEFLAQNNAKLDNLSEKEKE  419
             +IAG E GI+NPSFYLYKEDQLTG ++ALSQEEI+NK+DFMEFLAQNNAKLDNLSEKEKE
Sbjct  361   IIAGNEDGIKNPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSEKEKE  420

Query  420   KFRTEIKDFQKDSKAYLDALGNDRIAFVSKKDTKYSALITGFGNGDLSYTLKDYGKKADK  479
             KF+TEI +FQKD KAYLDALGND+IAFVSKKD K  AL+T FGNG+LSYTLKDYGKK DK
Sbjct  421   KFQTEIENFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGELSYTLKDYGKKQDK  480

Query  480   ALDREAKITLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFNKVAVFN  539
             ALD E+K TLQGSLK DGVMFV+YSNFKYTNASK+PNKG+G TNGVSHLEA F+KVAVFN
Sbjct  481   ALDGETKTTLQGSLKYDGVMFVNYSNFKYTNASKSPNKGLGTTNGVSHLEANFSKVAVFN  540

Query  540   LPNLNNLAITNFIRRDLEDKLIAKGLSPQEANKIIKDFLSNNKELVGKVSNFNKAVAEAK  599
             LPNLNNLAITN+IRRDLEDKL AKGLSPQEANK+IKDFL++NKE+VGKVSNFNKAVAEAK
Sbjct  541   LPNLNNLAITNYIRRDLEDKLWAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAVAEAK  600

Query  600   NTGNYDEVKKAQKDLEKSLKKRGHLEKDVaknleskssnknkmeaksQANSQKDEIFALI  659
             NTGNYDEVKKAQKDLEKSL+KR HLEK+VAK+LES++ NKN+MEAK+QANSQKD IFALI
Sbjct  601   NTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKIFALI  660

Query  660   nkeanrearaaaYTQNLKDIKRELSDKLENVNKNLKDFSKSFDEFKNGKNKDFSKAEETL  719
             ++EA++EAR A++  NLK+++ ELSDKLEN+NKNLKDF+KSFDE+K+GKN+DFSKAEETL
Sbjct  661   SQEASKEARVATFDPNLKGVRSELSDKLENINKNLKDFGKSFDELKSGKNNDFSKAEETL  720

Query  720   KALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSVKDVIINQK  779
             KALK+SVKDLGINPEWISK+ENLNAALN+FKNGKNKDFSKVTQAKSDLENS+KDVIINQK
Sbjct  721   KALKDSVKDLGINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVIINQK  780

Query  780   ITDKVDNLNQAVSVAKATGDFSRVEQALADLKNFSKEQLAQQAQKNEDFNTGKKSEIYQS  839
             ITDKVDNLNQAVS  K TGDFS+VEQALA+LKN+S             ++ GK+S++ +S
Sbjct  781   ITDKVDNLNQAVSEIKLTGDFSKVEQALAELKNLS-------------LDLGKNSDLQKS  827

Query  840   VKngvngtlvgnglSQAEATTLSKNFSDIKKELKAk---lgnfnnnnnglknEPIYAKVN  896
             VKNGVNGTLV+NGLS++EATTL+KNFSDI+KEL+ K    +N NNN    + EPIYA+VN
Sbjct  828   VKNGVNGTLVSNGLSKTEATTLTKNFSDIRKELNEKLFGNSNNNNNGLKNNTEPIYAQVN  887

Query  897   KKKAGQAASLEEPIYAQVAKKVNAKIDRLNQIASGLG-NVGQAAGFPLKKHDKVDDLSKV  955
             KKK+GQA+S EEPIYAQVAKKV+AKID+LN+ +S++  ++++   ++    + V+++S  
Sbjct  888   KKKTGQATSPEEPIYAQVAKKVSAKIDQLNEATSAINRKIDRINKIASAGKG-VGGFSGA  946

Query  956   GLSASPEPIYATID---DLGGPFPLKKHDKVDDLSKVGLSASPEPIYATIDDLGGPFPLK  1012
             G SASPEPIYATID      + FPL++   V+DLSKVG                      
Sbjct  947   GRSASPEPIYATIDFDEANQAGFPLRRSAAVNDLSKVG----------------------  984

Query  1013  RHDKVDDLSKVGLSRNQELAQKIDNLNQAVSEAKAGFFGNLEQTIDKLKDSAKHNPMNLW  1072
                         LSR+QEL+++I++L+QAVSEAK+G FGNLEQ ID LKDS+K N+++LW
Sbjct  985   ------------LSREQELTRRIGDLSQAVSEAKTGHFGNLEQKIDELKDSTKKNALKLW  1032

Query  1073  VESAKQVPASLSAKLDNYATNSHTRISSNIKNGAINEKATGMLTQKNPEWLKLVNDKIVA  1132
             VESAKQVP+SL AKLDNYATNSHTRI+SN+++G+INEKATGMLTQKNPEWLKLVNDKIVA
Sbjct  1033  VESAKQVPTSLQAKLDNYATNSHTRINSNVQSGTINEKATGMLTQKNPEWLKLVNDKIVA  1092

Query  1133  HNVGSVSLSEYDKIGFNQKNMKDYSDSFKFSTKLNNAAKDIKSGFTQFLTNIFSTASYYC  1192
             HNVGS +LS YDKIGFNQKNMKDYSDSFKFSTKLNNA KDIKS+F QFLTN FST+S Y 
Sbjct  1093  HNVGSAPLSAYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDIKSSFVQFLTNTFSTGS-YS  1151

Query  1193  LAGENAEHGIKNANTKGGFQKS  1214
             L   N EHG+KN+NTKGGFQKS
Sbjct  1152  LMKANVEHGVKNTNTKGGFQKS  1173

41) cagA in NC_011333


> NC_017366_P1|24|G24|385215791|YP_005775747.1|Helicobacter_pylori_F32|+|32443..35964|cagA|HPF32_0523|cag 
pathogenicity island 
protein
Length=1173

 Score = 1366 bits (5184),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 924/1216 (76%), Positives = 1063/1216 (88%), Gaps = 51/1216 (4%)

Query  1     MTNETINQQPQTE-AAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNRQAFN  59
             MTNETI+Q    + ++F PQ+FINNLQVAF+KVDNAVAS+DPDQKPIVDKND+DNRQAF+
Sbjct  1     MTNETIDQTTTPDQTGFVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDKDNRQAFE  60

Query  60    GISQLREEYSNKAIKNPAKKNQYFSDFIDKSNNLINKDALIDVESSTKSFQKFGDQRYQI  119
              ISQLREEY+NKAIKNPAKKNQYFSDFI+KSN+LINKD LI V+SS  SF+KFGDQRYQI
Sbjct  61    KISQLREEYANKAIKNPAKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQRYQI  120

Query  120   FTSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQSFAGIIIGNQIRTD  179
             FTSWVS Q+DPSKINT+ IRNFMEN+IQPPI+DDKEKAEFL+SAKQSFAGIIIGNQIR+D
Sbjct  121   FTSWVSLQKDPSKINTQQIRNFMENVIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSD  180

Query  180   QKFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSFIFDKKQSSDVKEAINQEPVPHVQPD  239
             +KFMGVFDESLK RQEAEKN+ P+GGDWLDIFLSF+F+KKQSSD+KE++NQEP P+ + +
Sbjct  181   EKFMGVFDESLKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPDFEQN  240

Query  240   IATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNAL  299
             +ATTTTDIQGLPPEARDLLDERGNF KFTLGD+EMLDVEGVAD DPNYKFNQLLIHNNAL
Sbjct  241   LATTTTDIQGLPPEARDLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIHNNAL  300

Query  300   SSVLMGSHNGIEPEKVSLLYGGNGGPKAKHDWNATVGYKDQQGNNVATIINVHMKNGSGL  359
             SS+LMGSH+ IEPEKVSLLYG+NGGP A+HDWNATVGYK+QQGNNVAT+IN H++NGSGL
Sbjct  301   SSMLMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLNNGSGL  360

Query  360   VIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIRNKVDFMEFLAQNNAKLDNLSEKEEE  419
             +IAG E GI+NPSFYLYKEDQLTG ++ALSQEEI+NKVDFMEFLAQNNAKLDNLSEKE E
Sbjct  361   IIAGNEDGIKNPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSEKEKE  420

Query  420   KFRNEIKDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGKKADK  479
             KF+ EI +FQKD KAYLDALGND+IAFVSKKD KH AL+TEFGNG+LSYTLKDYGKK DK
Sbjct  421   KFQTEIENFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGELSYTLKDYGKKQDK  480

Query  480   ALDREKNVTLQGNLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFSKVAVFN  539
             ALD E + TLQG+LK DGVMFV+YSNFKYTNASK+PNKG+G TNGVSHLEA FSKVAVFN
Sbjct  481   ALDGETKTTLQGSLKYDGVMFVNYSNFKYTNASKSPNKGLGTTNGVSHLEANFSKVAVFN  540

Query  540   LPDLNNLAITSLVRRDLEDKLIAKGLSPQETNKLVKDFLSSNKELVGKALNFNKAVAEAK  599
             LP+LNNLAIT+ +RRDLEDKL AKGLSPQE+NKL+KDFL+SNKE+VGK  NFNKAVAEAK
Sbjct  541   LPNLNNLAITNYIRRDLEDKLWAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAVAEAK  600

Query  600   NTGNYDEVKQAQkdlekslkkrerlekevakkleSKSGNKNKMEAKSQANSQKDEIFALI  659
             NTGNYDEVK+AQKDLEKSL+KRE+LEKEVAKKLES+++NKN+MEAK+QANSQKD IFALI
Sbjct  601   NTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKIFALI  660

Query  660   NKEANREARAITYAQNLKGIKRELSDKLENVNKNLKDFSKSFDEFKNGKNKDFSKSEETL  719
             ++EA++EAR  T+  NLKG++ ELSDKLEN+NKNLKDF+KSFDE+K+GKN+DFSK+EETL
Sbjct  661   SQEASKEARVATFDPNLKGVRSELSDKLENINKNLKDFGKSFDELKSGKNNDFSKAEETL  720

Query  720   KALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSVKDVIINQK  779
             KALK+SVKDLGINPEWISK+ENLNAALN+FKNGKNKDFSKVTQAKSDLENS+KDVIINQK
Sbjct  721   KALKDSVKDLGINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVIINQK  780

Query  780   VTDKVDNLNQAVSVAKATGDFSRVEQALADLKNFSKEQLAQQAQKNEDFNTGKNSALYQS  839
             +TDKVDNLNQAVS  K TGDFS+VEQALA+LKN+S             ++ GKNS L +S
Sbjct  781   ITDKVDNLNQAVSEIKLTGDFSKVEQALAELKNLS-------------LDLGKNSDLQKS  827

Query  840   VKngvngtlvgnglSKAEATTLSKNFSDIKKElnaklgnfnnnnnnglknSTEPIYAKVN  899
             VKNGVNGTLV+NGLSK+EATTL+KNFSDI+KELN KL   +NNNNNGLKN+TEPIYA+VN
Sbjct  828   VKNGVNGTLVSNGLSKTEATTLTKNFSDIRKELNEKLFGNSNNNNNGLKNNTEPIYAQVN  887

Query  900   KKKAGQAASPEEPIYAQVAKKVNAKIDRLNQIASGLGVVGQAVGFPLKRHDKVGDLSKVG  959
             KKK+GQA+SPEEPIYAQVAKKV+AKID+LN+ +S++    + +         VG++S  G
Sbjct  888   KKKTGQATSPEEPIYAQVAKKVSAKIDQLNEATSAINRKIDRINKIASAGKGVGGFSGAG  947

Query  960   QSVSPEPIYATID---DLGGPFPLKRHDKVGDLSKVGLSVSPEPIYATIDDLGGPFPLKR  1016
             +S SPEPIYATID      + FPL+R   V DLSKVG                       
Sbjct  948   RSASPEPIYATIDFDEANQAGFPLRRSAAVNDLSKVG-----------------------  984

Query  1017  HDKVGDLSKVGLSREQQLKQKIDNLSQAVSEAKAGFFGNLEQTIDNLKDSAKNNPVSLWA  1076
                        LSREQ+L ++I++LSQAVSEAK+G FGNLEQ ID+LKDS+K+N++ LW 
Sbjct  985   -----------LSREQELTRRIGDLSQAVSEAKTGHFGNLEQKIDELKDSTKKNALKLWV  1033

Query  1077  EGAKKVPASLSAKLDNYATNSHTRINSNIQSGAINEKATGMLTQKNPEWLKLVNDKIVAH  1136
             E+AK+VP+SL AKLDNYATNSHTRINSN+QSG+INEKATGMLTQKNPEWLKLVNDKIVAH
Sbjct  1034  ESAKQVPTSLQAKLDNYATNSHTRINSNVQSGTINEKATGMLTQKNPEWLKLVNDKIVAH  1093

Query  1137  NVGSVPLLEYDKIGFNQKSMKDYSDSFKFSTELNNAVKDVKSGFTQFLANAFSTGYYRLA  1196
             NVGS PL  YDKIGFNQK+MKDYSDSFKFST LNNAVKD+KS+F QFL+N+FSTG Y L 
Sbjct  1094  NVGSAPLSAYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDIKSSFVQFLTNTFSTGSYSLM  1153

Query  1197  GENAEHGIKNVNTKGG  1212
               N EHG+KN NTKGG
Sbjct  1154  KANVEHGVKNTNTKGG  1169

42) HPGAM_02795 in NC_017371


> NC_017366_P1|24|G24|385215791|YP_005775747.1|Helicobacter_pylori_F32|+|32443..35964|cagA|HPF32_0523|cag 
pathogenicity island 
protein
Length=1173

 Score = 1344 bits (5099),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 907/1235 (74%), Positives = 1060/1235 (86%), Gaps = 69/1235 (5%)

Query  1     MTNETIDQQPQTE-AAFNPQQFINNLQVAFLKIDNAVASYDPDQKPIVDKNDRDNRQAFE  59
             MTNETIDQ    + ++F PQ+FINNLQVAF+K+DNAVAS+DPDQKPIVDKND+DNRQAFE
Sbjct  1     MTNETIDQTTTPDQTGFVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDKDNRQAFE  60

Query  60    GISQLREEYSNKAIKNPTKKNQYFSDFINKSNDLINKDNLIDVESSTESFRKFGDQRYRI  119
              ISQLREEY+NKAIKNP+KKNQYFSDFINKSNDLINKDNLI V+SS ESFRKFGDQRY+I
Sbjct  61    KISQLREEYANKAIKNPAKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQRYQI  120

Query  120   FTSWVSHQNDPSKINTRSIRNFMERTIQPPIPDDKEKAEFLKSAKQSFAGIIIGNQIRTD  179
             FTSWVS Q+DPSKINT+ IRNFME  IQPPI+DDKEKAEFL+SAKQSFAGIIIGNQIR+D
Sbjct  121   FTSWVSLQKDPSKINTQQIRNFMENVIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSD  180

Query  180   QKFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSFIFDKKQSSDVKEAINQEPVPNVQPD  239
             +KFMGVFDESLK RQEAEKN+ P+GGDWLDIFLSF+F+KKQSSD+KE++NQEP P+ + +
Sbjct  181   EKFMGVFDESLKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPDFEQN  240

Query  240   IATTTIHIQGLPPESRDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNAL  299
             +ATTT +IQGLPPE+RDLLDERGNF KFTLGD+EMLDVEGVAD DPNYKFNQLLIHNNAL
Sbjct  241   LATTTTDIQGLPPEARDLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIHNNAL  300

Query  300   SSVLMGSHNGIEPEKVSLLYAGNGGFGDKHDWNATVGYKDQQGNNVATMINVHMKNGSGL  359
             SS+LMGSH+ IEPEKVSLLY++NGG   +HDWNATVGYK+QQGNNVAT+IN H++NGSGL
Sbjct  301   SSMLMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLNNGSGL  360

Query  360   VIAGGEKGINNPSFYLYKEDQRTGSQRALSQEEILNKIDFMEFLAQNNAKLDNLSEKEKE  419
             +IAG E GI+NPSFYLYKEDQ TG ++ALSQEEI NK+DFMEFLAQNNAKLDNLSEKEKE
Sbjct  361   IIAGNEDGIKNPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSEKEKE  420

Query  420   KFQNEIKDFQKDSKPYLGALGNDRIAFVSKKDPKHSALITEFNKGDLSYTLKDYGKKADK  479
             KFQ EI +FQKD K+YL+ALGND+IAFVSKKDPKH AL+TEF +G+LSYTLKDYGKK DK
Sbjct  421   KFQTEIENFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGELSYTLKDYGKKQDK  480

Query  480   ALDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFSKVAVFN  539
             ALD E + TLQGSLK DGVMFV+YSNFKYTNASK+PNKG+G TNGVSHLEA FSKVAVFN
Sbjct  481   ALDGETKTTLQGSLKYDGVMFVNYSNFKYTNASKSPNKGLGTTNGVSHLEANFSKVAVFN  540

Query  540   LPNLNNLAITSVVRRDLEDKLIAKGLSPQEANKLVKDFLSSNKELVGKALNFNKAVADAK  599
             LPNLNNLAIT+ +RRDLEDKL AKGLSPQEANKL+KDFL+SNKE+VGK  NFNKAVA+AK
Sbjct  541   LPNLNNLAITNYIRRDLEDKLWAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAVAEAK  600

Query  600   NTGNYDEVKQAQkdlekslkkrerlekdVAKNLESKSGNKNKMEAKSQANSQKDEIFALI  659
             NTGNYDEVK+AQKDLEKSL+KRE+LEK+VAK+LES+++NKN+MEAK+QANSQKD IFALI
Sbjct  601   NTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKIFALI  660

Query  660   NKEANRDARAIAYAQNLKGIKRELSDKLEKINKDLKDFSKSFDEFKNGKNKDFSKAEETL  719
             ++EA+++AR  ++  NLKG++ ELSDKLE+INK+LKDF+KSFDE+K+GKN+DFSKAEETL
Sbjct  661   SQEASKEARVATFDPNLKGVRSELSDKLENINKNLKDFGKSFDELKSGKNNDFSKAEETL  720

Query  720   KALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLEGSIKDVIINQK  779
             KALK+SVKDLGINPEWISK+ENLNAALN+FKNGKNKDFSKVTQAKSDLE SIKDVIINQK
Sbjct  721   KALKDSVKDLGINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVIINQK  780

Query  780   ITDKVDNLNQAVSVAKIAGDFSGVEQALADLKNFSKEQLAQQAQKNESFNVGK-SEIYQS  838
             ITDKVDNLNQAVS  K++GDFS VEQALA+LKN+             S+++GK S++ +S
Sbjct  781   ITDKVDNLNQAVSEIKLTGDFSKVEQALAELKNL-------------SLDLGKNSDLQKS  827

Query  839   vkngvngtlvgnglsgMEATALAKNFSDIkkelnekfknfnnnnnglkngkDKGPEEPIY  898
             VKNGVNGTLV+NGLS  EAT+L+KNFSDI       +++    N+  +N   K   EPIY
Sbjct  828   VKNGVNGTLVSNGLSKTEATTLTKNFSDI----RKELNEKLFGNSNNNNNGLKNNTEPIY  883

Query  899   AQVNKKKTGQVASPEEPIYAQVAKKVTKKIDQLNQAASGFGGVGQAGFPLKRHDKVEDLS  958
             AQVNKKKTGQ +SPEEPIYAQVAKKV+ KIDQLN+A+S++          ++ D+++ ++
Sbjct  884   AQVNKKKTGQATSPEEPIYAQVAKKVSAKIDQLNEATSAIN---------RKIDRINKIA  934

Query  959   KVG-GVGQAGFP-LKRHDKVEDL-SKV--GGVGQAGFPLKRHDKVDDLSKVGRSVSPEPI  1013
               G GVG  GF+   R    E + + +  +   QAGFPL+R   V+DLSKV         
Sbjct  935   SAGKGVG--GFSGAGRSASPEPIYATIDFDEANQAGFPLRRSAAVNDLSKV---------  983

Query  1014  YATIDDLGGSFPLKRSTKVEDLSKVGLSRNQELTQKIDNLSQAVSEAKAGFFGNLEQTID  1073
                                      GLSR+QELT++I++LSQAVSEAK+G FGNLEQ ID
Sbjct  984   -------------------------GLSREQELTRRIGDLSQAVSEAKTGHFGNLEQKID  1018

Query  1074  KLKDSTKNNPMNLWAESAKKVPASLSAKLDNYATNSHTRINSNIQNGAINEKATGMLTQK  1133
              LKDSTK+N+++LW ESAK+VP+SL AKLDNYATNSHTRINSN+Q+G+INEKATGMLTQK
Sbjct  1019  ELKDSTKKNALKLWVESAKQVPTSLQAKLDNYATNSHTRINSNVQSGTINEKATGMLTQK  1078

Query  1134  NPEWLKLVNDKIVAHNVGSAPLSEYDNIGFSQKNMKDYSDSFKFSTKLNNAVKDIKSGFT  1193
             NPEWLKLVNDKIVAHNVGSAPLS YD+IGF+QKNMKDYSDSFKFSTKLNNAVKDIKS+F 
Sbjct  1079  NPEWLKLVNDKIVAHNVGSAPLSAYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDIKSSFV  1138

Query  1194  QFLANAFSTGYYSMARENAEHGIKNANTKGGFQKS  1228
             QFL+N+FSTG YS+ + N EHG+KN+NTKGGFQKS
Sbjct  1139  QFLTNTFSTGSYSLMKANVEHGVKNTNTKGGFQKS  1173

43) HPPC18_02620 in NC_017742


> NC_017366_P1|24|G24|385215791|YP_005775747.1|Helicobacter_pylori_F32|+|32443..35964|cagA|HPF32_0523|cag 
pathogenicity island 
protein
Length=1173

 Score = 1341 bits (5088),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 914/1188 (77%), Positives = 1043/1188 (88%), Gaps = 50/1188 (4%)

Query  1     MANETINQTKKPDQTPSQTAFNPQQFIGSIQVAFIKLGSAVASFDPDQKPIVDKNDRDNR  60
             M+NETI+QT     TP QT+F PQ+FI ++QVAFIK+++AVASFDPDQKPIVDKND+DNR
Sbjct  1     MTNETIDQTT----TPDQTGFVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDKDNR  56

Query  61    QAFNGISQLREEYANKAIKNPTKKNQYFSDFINGsndlinknnlididssTKSFEKFGDQ  120
             QAF+ ISQLREEYANKAIKNP+KKNQYFSDFIN SNDLINK+NLI +DSS  SF KFGDQ
Sbjct  57    QAFEKISQLREEYANKAIKNPAKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQ  116

Query  121   RYRIFVNWVS-HQDPSKINTQKIRNFMENIIQPPISDDKEKAEFLKSAKQAFAGIIIGNQ  179
             RY+IF +WVS ++DPSKINTQ+IRNFMEN+IQPPISDDKEKAEFL+SAKQ+FAGIIIGNQ
Sbjct  117   RYQIFTSWVSLQKDPSKINTQQIRNFMENVIQPPISDDKEKAEFLRSAKQSFAGIIIGNQ  176

Query  180   IQSDEKFMGVFGESLKERQEAEKNGDPVGGDWLDIFLSLVFGKEQSSDLKETLNQEPRPN  239
             I+SDEKFMGVF+ESLK RQEAEKN++P GGDWLDIFLS+VF K QSSDLKETLNQEPRP+
Sbjct  177   IRSDEKFMGVFDESLKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPD  236

Query  240   VGQNIASTPTPIQGLPPEARDLLDKRSDFSKFTLGDMEMLDVEGIADIDPNYKFNQLVVH  299
               QN+A+T T IQGLPPEARDLLD R++F KFTLGD+EMLDVEG+AD DPNYKFNQL++H
Sbjct  237   FEQNLATTTTDIQGLPPEARDLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIH  296

Query  300   NNALSSMLMGSHSDIKPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINVHLKN  359
             NNALSSMLMGSHS+I PEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLIN HL+N
Sbjct  297   NNALSSMLMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLNN  356

Query  360   GSGLVITGNGSGINNPSFYLYKKDQLTGLEQALSQEEIQNKVGFMELLAQNNARLDNLSE  419
             GSGL+I+GN  GI+NPSFYLYK DQLTGL QALSQEEIQNKV+FME+LAQNNA+LDNLSE
Sbjct  357   GSGLIIAGNEDGIKNPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSE  416

Query  420   EEKEKFQTEIGNFQKDPKAYLDALGKDQIAFVSQKDPKHLALVTELGNGELSYTLKDYGK  479
              EKEKFQTEI NFQKD KAYLDALG+D+IAFVS+KDPKHLALVTE+GNGELSYTLKDYGK
Sbjct  417   KEKEKFQTEIENFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGELSYTLKDYGK  476

Query  480   RQDRALDRETKTTLQGNLKHDGVMFVNYSNFKYTNASKSPNEGIGATNGVSHLEANFSKV  539
             +QD+ALD ETKTTLQG+LK DGVMFVNYSNFKYTNASKSPN G+G+TNGVSHLEANFSKV
Sbjct  477   KQDKALDGETKTTLQGSLKYDGVMFVNYSNFKYTNASKSPNKGLGTTNGVSHLEANFSKV  536

Query  540   AVFNLSKLNGLAIFSFARQNLEGKLIAKGLNGKEANKLIKDFLNSNEELVGKALDFNKAV  599
             AVFNL++LN LAI ++ R++LE+KL AKGL+ +EANKLIKDFLNSN E+VGK  +FNKAV
Sbjct  537   AVFNLPNLNNLAITNYIRRDLEDKLWAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAV  596

Query  600   AEAKNTGNYDGVKKTQKDLEKSIRKRERLEKEITKKFESKSGNKNKMEAKAQANSQKDEV  659
             AEAKNTGNYD VKK+QKDLEKS+RKRE+LEKE++KK+ES+++NKN+MEAKAQANSQKD +
Sbjct  597   AEAKNTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKI  656

Query  660   FKLINEEAHKEARIATYTQNLEGIGRELSDKIENINKNLKDFGESFDALKSGKNKDFSKV  719
             F LI++EA KEAR+AT+  NL G+  ELSDK+ENINKNLKDFG SFD LKSGKN+DFSK 
Sbjct  657   FALISQEASKEARVATFDPNLKGVRSELSDKLENINKNLKDFGKSFDELKSGKNNDFSKA  716

Query  720   EETLKALESSVKDLGI-PEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSIKDAI  778
             EETLKAL  SVKDLGI PEWISK+ENLNAALN+FKNGKNKDFSKVTQAKSDLENSIKD I
Sbjct  717   EETLKALKDSVKDLGINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVI  776

Query  779   INQEITDKVGNLNQAVLIAKAIGDFSGVDQMLAELKNFSTDQKLDQKNESFNVGKNSDLQ  838
             INQ ITDKV+NLNQAV   K  GDFS V+Q LAELKN+           S+++GKNSDLQ
Sbjct  777   INQKITDKVDNLNQAVSEIKLTGDFSKVEQALAELKNL-----------SLDLGKNSDLQ  825

Query  839   KSVKngvngtlvgnglSKTEATTLTKKISDIKKELnekf-anfnsnnngfknnTEPIYAK  897
             KSVKNGVNGTLV+NGLSKTEATTLTK++SDI+KELNEK+ +N N+NNNG+KNNTEPIYA+
Sbjct  826   KSVKNGVNGTLVSNGLSKTEATTLTKNFSDIRKELNEKLFGNSNNNNNGLKNNTEPIYAQ  885

Query  898   VNKKKTGQVVSPEESIYDQLAKDVKAKIDKL--------------NKIASASKGVGDFSG  943
             VNKKKTGQ  SPEE+IY Q+AK V AKID+L              NKIASA+KGVG+FSG
Sbjct  886   VNKKKTGQATSPEEPIYAQVAKKVSAKIDQLNEATSAINRKIDRINKIASAGKGVGGFSG  945

Query  944   LGRSDSSEPIYATID---DLGGPFP---------LNKVGLSREQKLTQEIGNLNQAVSEA  991
              GRS S+EPIYATID      + FP         L+KVGLSREQ LT+ IG+L+QAVSEA
Sbjct  946   AGRSASPEPIYATIDFDEANQAGFPLRRSAAVNDLSKVGLSREQELTRRIGDLSQAVSEA  1005

Query  992   KACSFNNLEQTMHRLKDSTKKNVVNLWVESAKEVPAILQEKLDNYATNSHVHINSNVKNG  1051
             K+  F NLEQ ++ LKDSTKKN ++LWVESAK+VP+ LQ KLDNYATNSH +INSNV++G
Sbjct  1006  KTGHFGNLEQKIDELKDSTKKNALKLWVESAKQVPTSLQAKLDNYATNSHTRINSNVQSG  1065

Query  1052  TINEKATGMLTQKNPEWLKLVNDKIVAHNVGSAPLSDYDKIGFNQKNMKGYSDSFKFSTK  1111
             TINEKATGMLTQKNPEWLKLVNDKIVAHNVGSAPLS YDKIGFNQKNMK+YSDSFKFSTK
Sbjct  1066  TINEKATGMLTQKNPEWLKLVNDKIVAHNVGSAPLSAYDKIGFNQKNMKDYSDSFKFSTK  1125

Query  1112  LSNAVKNIKFGFMQYLTHCFSAGFYSPKKA--EYGV----TKSGFQKS  1153
             L+NAVK+IK +F+Q+LT+ FS+G YS  KA  E GV    TK+GFQKS
Sbjct  1126  LNNAVKDIKSSFVQFLTNTFSTGSYSLMKANVEHGVKNTNTKGGFQKS  1173

44) HPSH169_04745 in NC_017740


> NC_017366_P1|24|G24|385215791|YP_005775747.1|Helicobacter_pylori_F32|+|32443..35964|cagA|HPF32_0523|cag 
pathogenicity island 
protein
Length=1173

 Score = 1126 bits (4270),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 783/1213 (65%), Positives = 942/1213 (78%), Gaps = 163/1213 (13%)

Query  1     MANETIDQTKNPDQTPSQTAFDSQQFINNLQVVFTKVDSAVASFDPDQKPIVDKNDKDNR  60
             M+NETIDQT  PDQT    +F +Q+FINNLQV F KVD+AVASFDPDQKPIVDKNDKDNR
Sbjct  1     MTNETIDQTTTPDQT----GFVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDKDNR  56

Query  61    QAFNGISQLREEYANKAIKNPTKKNQYFSDFISKSNDLINKDNLIDTDSSTKSFQKFGTE  120
             QAF+ ISQLREEYANKAIKNP+KKNQYFSDFI+KSNDLINKDNLI  DSS  SF+KFG +
Sbjct  57    QAFEKISQLREEYANKAIKNPAKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQ  116

Query  121   RYQIFMNWVSHQKDPSKINTQKIRNFMENIVQPPISDDKEKAEFLRSAKQSFAGIIIGNQ  180
             RYQIF +WVS QKDPSKINTQ+IRNFMEN++QPPISDDKEKAEFLRSAKQSFAGIIIGNQ
Sbjct  117   RYQIFTSWVSLQKDPSKINTQQIRNFMENVIQPPISDDKEKAEFLRSAKQSFAGIIIGNQ  176

Query  181   IRSDEKFMGVFeesldesldesldesldesldesldesldeslKEKQEAQNNGDP-GGDW  239
             IRSDEKFMGVF+ESL                            K +QEA++N++P GGDW
Sbjct  177   IRSDEKFMGVFDESL----------------------------KARQEAEKNAEPAGGDW  208

Query  240   LDIFLSFAFDKKQSSDLKETLNQESRPNVEQNIATTPTPIQGLPLEARDLLDERGDFSKF  299
             LDIFLSF F+KKQSSDLKETLNQE+RP+ EQN+ATT T IQGLP EARDLLDERG+F KF
Sbjct  209   LDIFLSFVFNKKQSSDLKETLNQEPRPDFEQNLATTTTDIQGLPPEARDLLDERGNFFKF  268

Query  300   TLGD-------------PNYKFNQLVVHNNALSSMLMGSHGNIKPEKVSLLYGDNGGPEA  346
             TLGD             PNYKFNQL++HNNALSSMLMGSH+NI PEKVSLLYGDNGGPEA
Sbjct  269   TLGDVEMLDVEGVADKDPNYKFNQLLIHNNALSSMLMGSHSNIEPEKVSLLYGDNGGPEA  328

Query  347   RHDWNATVGYKNQQGNNVATLINAHLKNGSGLIIAGNENGINNPSFYLYKKDQLTGLEQA  406
             RHDWNATVGYKNQQGNNVATLINAHL+NGSGLIIAGNE+GI+NPSFYLYK DQLTGL QA
Sbjct  329   RHDWNATVGYKNQQGNNVATLINAHLNNGSGLIIAGNEDGIKNPSFYLYKEDQLTGLKQA  388

Query  407   LSQEEIQNKLGFMELLAQNNAKLDNLSKEEKEKFQTEIGNFQKDPKAYLDSLGNDRIAFV  466
             LSQEEIQNK++FME+LAQNNAKLDNLS  EKEKFQTEI NFQKD KAYLD+LGND+IAFV
Sbjct  389   LSQEEIQNKVDFMEFLAQNNAKLDNLSEKEKEKFQTEIENFQKDRKAYLDALGNDHIAFV  448

Query  467   SKKDNKHLALVTEFGNGELSYTLKDYGKRQDRALDREIKTTLQGNLKDDGVMFVNYSNFK  526
             SKKD KHLALVTEFGNGELSYTLKDYGK+QD+ALD E KTTLQG+LK DGVMFVNYSNFK
Sbjct  449   SKKDPKHLALVTEFGNGELSYTLKDYGKKQDKALDGETKTTLQGSLKYDGVMFVNYSNFK  508

Query  527   YTNASKSPNEGIGATNGVSHLEANFSKVAVFNLPKLNGLAVSSFARRNLENKLIAKGFPP  586
             YTNASKSPN G+G+TNGVSHLEANFSKVAVFNLP+LN LA++++ RR+LE+KL AKG++P
Sbjct  509   YTNASKSPNKGLGTTNGVSHLEANFSKVAVFNLPNLNNLAITNYIRRDLEDKLWAKGLSP  568

Query  587   KEASKIIKDFLNSNKELLGKALNFNKAVAEAKNTGNYGGVKKAQKDLEKSIRKRERLEKE  646
             +EA+K+IKDFLNSNKE++GK  NFNKAVAEAKNTGNY+ VKKAQKDLEKS+RKRE+LEKE
Sbjct  569   QEANKLIKDFLNSNKEMVGKVSNFNKAVAEAKNTGNYDEVKKAQKDLEKSLRKREHLEKE  628

Query  647   ITKQFESKSGNKNKMEAKAQANSQKDEIFKLINEGAYKEARIIAYDQNLKGIRREL----  702
             ++K++ES+++NKN+MEAKAQANSQKD IF LI++ A KEAR+ ++D NLKG+R EL    
Sbjct  629   VAKKLESRNDNKNRMEAKAQANSQKDKIFALISQEASKEARVATFDPNLKGVRSELSDKL  688

Query  703   ----REL-----------------FDKIENLNKNLKD-----------------FGESFD  724
                 ++L                 F K E+  K LKD                 +  +++
Sbjct  689   ENINKNLKDFGKSFDELKSGKNNDFSKAEETLKALKDSVKDLGINPEWISKIENLNAALN  748

Query  725   ALKSGKNKDFSKAEETLKALESSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQ  784
              +K+GKNKDFSK  ++   LE+S+KD+ IN     KV+NLN A++E+K     DFSKV Q
Sbjct  749   DFKNGKNKDFSKVTQAKSDLENSIKDVIINQKITDKVDNLNQAVSEIKL--TGDFSKVEQ  806

Query  785   A-------------KSDLENSIKDVIINQEITDKVDNLNQAVSIAKATGDFS-GLDQAL-  829
             A             +SDL++S+K+ +    +++ + +  +A +++K  +D+   L++ L 
Sbjct  807   ALAELKNLSLDLGKNSDLQKSVKNGVNGTLVSNGLSK-TEATTLTKNFSDIRKELNEKLF  865

Query  830   ------------------AELKNFNVGKNSDRSEPIYA--------TIDDL-DGSSPLKR  862
                               A++++ + G+ +   EPIYA         ID+L +++S+++R
Sbjct  866   GNSNNNNNGLKNNTEPIYAQVNKKKTGQATSPEEPIYAQVAKKVSAKIDQLNEATSAINR  925

Query  863   YAKVDDLSKV-------------GQSDSPEPIYANLG------GSSPLKRYAKVDDLSKV  903
               K+D ++K+             G+S SPEPIYA ++      ++ PL+R A V+DLSKV
Sbjct  926   --KIDRINKIASAGKGVGGFSGAGRSASPEPIYATIDFDEANQAGFPLRRSAAVNDLSKV  983

Query  904   GLSREQELTQKIGNLNQAVSEAKAGSFGNLEQTMHGLKDSTKKNVVNLWFEGARKVPISL  963
             GLSREQELT++IG+L+QAVSEAK+G FGNLEQ ++ LKDSTKKN ++LW E+A++VP SL
Sbjct  984   GLSREQELTRRIGDLSQAVSEAKTGHFGNLEQKIDELKDSTKKNALKLWVESAKQVPTSL  1043

Query  964   PSSQAKLDNYATNSHTRINSNVKNGTINEKAIGMLTQKNPEWLKLVNDKIVAHNVGSTPL  1023
                QAKLDNYATNSHTRINSNV++GTINEKA GMLTQKNPEWLKLVNDKIVAHNVGS+PL
Sbjct  1044  ---QAKLDNYATNSHTRINSNVQSGTINEKATGMLTQKNPEWLKLVNDKIVAHNVGSAPL  1100

Query  1024  SDYDKIGFNQKDMKGYSDSFKFSTKLSNAVKNIKPGFVQCLTDCISAGSYSPKKA--EHG  1081
             S YDKIGFNQK+MK+YSDSFKFSTKL+NAVK+IK++FVQ LT+ +S+GSYS  KA  EHG
Sbjct  1101  SAYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDIKSSFVQFLTNTFSTGSYSLMKANVEHG  1160

Query  1082  V----TKSGFQKS  1090
             V    TK+GFQKS
Sbjct  1161  VKNTNTKGGFQKS  1173

45) HPSH417_04540 in NC_017739


> NC_017366_P1|24|G24|385215791|YP_005775747.1|Helicobacter_pylori_F32|+|32443..35964|cagA|HPF32_0523|cag 
pathogenicity island 
protein
Length=1173

 Score = 1111 bits (4213),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 784/1219 (65%), Positives = 938/1219 (77%), Gaps = 165/1219 (13%)

Query  1     MANETINQPDQTPSQTAFDSQQFINNLQVAFIKVDSAVASFDPDQKPIVDKNDRDNRQAF  60
             M+NETI+Q   TP QT+F +Q+FINNLQVAFIKVD+AVASFDPDQKPIVDKND+DNRQAF
Sbjct  1     MTNETIDQTT-TPDQTGFVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDKDNRQAF  59

Query  61    DGISQLREEYANKAIKNPTKKNQYFSDFISKSNDLINKDNLIDTDSSTKSFQKFGTERYQ  120
             + ISQLREEYANKAIKNP+KKNQYFSDFI+KSNDLINKDNLI  DSS  SF+KFG +RYQ
Sbjct  60    EKISQLREEYANKAIKNPAKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQRYQ  119

Query  121   IFMNWVSHQKDPSKINTQKIRNFMENIIQPPISDDKEKAEFLRSAKQSFAGIIIGNQTRS  180
             IF +WVS QKDPSKINTQ+IRNFMEN+IQPPISDDKEKAEFLRSAKQSFAGIIIGNQ RS
Sbjct  120   IFTSWVSLQKDPSKINTQQIRNFMENVIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRS  179

Query  181   DEKFMGVFGesldesldesldesldesldesldesldesldesldeslKERQEAENNGDP  240
             DEKFMGVF+ESL                                    K RQEAE+N++P
Sbjct  180   DEKFMGVFDESL------------------------------------KARQEAEKNAEP  203

Query  241   -GGDWLDTFLSFAFDKKQSSDLKETLNQEPRPNVGQNIATTTTDIQGLPPEARDLLDERG  299
              GGDWLD FLSF F+KKQSSDLKETLNQEPRP+  QN+ATTTTDIQGLPPEARDLLDERG
Sbjct  204   AGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPDFEQNLATTTTDIQGLPPEARDLLDERG  263

Query  300   NFPKFTLGD-------------PNYKFNQLVVHNNALSSMLMGSHSNMEPEKVSLLYGDN  346
             NF KFTLGD             PNYKFNQL++HNNALSSMLMGSHSN+EPEKVSLLYGDN
Sbjct  264   NFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIHNNALSSMLMGSHSNIEPEKVSLLYGDN  323

Query  347   GGPEARHDWNATVGYKNQQGNNVATLINAHLKNGSGLIIAGNENGINNPSFYLYKKDQLT  406
             GGPEARHDWNATVGYKNQQGNNVATLINAHL+NGSGLIIAGNE+GI+NPSFYLYK DQLT
Sbjct  324   GGPEARHDWNATVGYKNQQGNNVATLINAHLNNGSGLIIAGNEDGIKNPSFYLYKEDQLT  383

Query  407   GLEQALSQEEIQNKLGFMEFLAQNSARHVGLNNLSKEEKEKFQTEIGNFQKDPKPYLDSL  466
             GL QALSQEEIQNK++FMEFLAQN+A+   L+NLS  EKEKFQTEI NFQKD K+YLD+L
Sbjct  384   GLKQALSQEEIQNKVDFMEFLAQNNAK---LDNLSEKEKEKFQTEIENFQKDRKAYLDAL  440

Query  467   GNDRIAFVSKKDSKHLALVTEFGNGELSYTLKDYGKKPDRALDRETKTTLQGNLKHDGVM  526
             GND+IAFVSKKD+KHLALVTEFGNGELSYTLKDYGKK D+ALD ETKTTLQG+LK DGVM
Sbjct  441   GNDHIAFVSKKDPKHLALVTEFGNGELSYTLKDYGKKQDKALDGETKTTLQGSLKYDGVM  500

Query  527   FVNYSNFKYTNASKSPNEGIGATNGVSHLEANFSKVAVFNLASSNELTISNFAKRNLEDK  586
             FVNYSNFKYTNASKSPN G+G+TNGVSHLEANFSKVAVFNL++ N+L+I+N+ +R+LEDK
Sbjct  501   FVNYSNFKYTNASKSPNKGLGTTNGVSHLEANFSKVAVFNLPNLNNLAITNYIRRDLEDK  560

Query  587   LIAKGLSGKESNKLIKDFLNSNKELLEKSLNFNKAVAEAKNTGNYGGVKKAQKDLEKSIR  646
             L AKGLS +E+NKLIKDFLNSNKE++ K  NFNKAVAEAKNTGNY+ VKKAQKDLEKS+R
Sbjct  561   LWAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAVAEAKNTGNYDEVKKAQKDLEKSLR  620

Query  647   KRERLEQEITKQFESKSGNKNKMEAKAQANSQKDEVFKLINEGAYKEARNIAYAQNLKGI  706
             KRE+LE+E++K++ES+++NKN+MEAKAQANSQKD +F LI++ A KEAR  ++  NLKG+
Sbjct  621   KREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKIFALISQEASKEARVATFDPNLKGV  680

Query  707   RREL--------REL-----------------FDKIENLNKNLKD---------------  726
             R EL        ++L                 F K E+  K LKD               
Sbjct  681   RSELSDKLENINKNLKDFGKSFDELKSGKNNDFSKAEETLKALKDSVKDLGINPEWISKI  740

Query  727   --FNKSFDALKSGKNKDFSKAEETLKALESSVKDLGIPEW-TSKVENLNAALNEFKNGKN  783
               +N +++ +K+GKNKDFSK  ++   LE+S+KD+ I +  T KV+NLN A++E+K    
Sbjct  741   ENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVIINQKITDKVDNLNQAVSEIKL--T  798

Query  784   KDFSKVTQA-------------KSDLENSIKDVIINQEITDKVDNLNQAVSIAKATGDFS  830
              DFSKV QA             +SDL++S+K+ +    +++ + +  +A +++K  +D+ 
Sbjct  799   GDFSKVEQALAELKNLSLDLGKNSDLQKSVKNGVNGTLVSNGLSK-TEATTLTKNFSDIR  857

Query  831   -GLDQAL-------------------AELKNFNVGKNSDRSEPIYA--------TIDDLD  862
               L++ L                   A++++ + G+ +   EPIYA         ID+L+
Sbjct  858   KELNEKLFGNSNNNNNGLKNNTEPIYAQVNKKKTGQATSPEEPIYAQVAKKVSAKIDQLN  917

Query  863   GSSP-----LKRYAKVDDLSK-------AGRLDSPEPIYATID---DLGGPFSLKKYAKV  907
              +++     + R  K+   +K       AGR  SPEPIYATID      + F+L++ A V
Sbjct  918   EATSAINRKIDRINKIASAGKGVGGFSGAGRSASPEPIYATIDFDEANQAGFPLRRSAAV  977

Query  908   DDLTKVGFSREQELTQKIGNLNQAVSEAKAGFFGNLEQTMDRLKDSTKKNVVNLWFEGAR  967
             +DL+KVG+SREQELT++IG+L+QAVSEAK+G FGNLEQ +D LKDSTKKN ++LW E+A+
Sbjct  978   NDLSKVGLSREQELTRRIGDLSQAVSEAKTGHFGNLEQKIDELKDSTKKNALKLWVESAK  1037

Query  968   KVPISLPSSQAKLDNYATNSHTRINSNVKNGTINEKAIGMLTQKNPEWLKLVNDKIVAHN  1027
             +VP SL   QAKLDNYATNSHTRINSNV++GTINEKA GMLTQKNPEWLKLVNDKIVAHN
Sbjct  1038  QVPTSL---QAKLDNYATNSHTRINSNVQSGTINEKATGMLTQKNPEWLKLVNDKIVAHN  1094

Query  1028  VGSTPLSDYDKIGFNQKNMKGYSDSFKFSTKLSNAVKNIKSGFEQLLTDCISAGSYSPKK  1087
             VGS+PLS YDKIGFNQKNMK+YSDSFKFSTKL+NAVK+IKS+F Q+LT+ +S+GSYS  K
Sbjct  1095  VGSAPLSAYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDIKSSFVQFLTNTFSTGSYSLMK  1154

Query  1088  A--EYGV----TKSGFQKS  1100
             A  E GV    TK+GFQKS
Sbjct  1155  ANVEHGVKNTNTKGGFQKS  1173

46) HPSH_04215 in NC_010698


> NC_017366_P1|24|G24|385215791|YP_005775747.1|Helicobacter_pylori_F32|+|32443..35964|cagA|HPF32_0523|cag 
pathogenicity island 
protein
Length=1173

 Score = 1109 bits (4206),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 789/1202 (66%), Positives = 932/1202 (78%), Gaps = 146/1202 (12%)

Query  1     MANETINQTKNPDQTPNQTAFDPQQFINNLQVAFIKVDSAVASFDPDQKPIVDKNDRDNR  60
             M+NETI+QT     TP+QT+F PQ+FINNLQVAFIKVD+AVASFDPDQKPIVDKND+DNR
Sbjct  1     MTNETIDQTT----TPDQTGFVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDKDNR  56

Query  61    QAFNGISQLREEYankaiknpnkknQYFSDFINKSNDLINKDNLIDTDSSTKSFQKFGPE  120
             QAF+ ISQLREEYANKAIKNP KKNQYFSDFINKSNDLINKDNLI  DSS  SF+KFG +
Sbjct  57    QAFEKISQLREEYANKAIKNPAKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQ  116

Query  121   PYQIFMNWVSHQKDPSKINTQKIRDFMENIIQPPISDDKEKAEFLRSAKQSFAGIIIGNQ  180
              YQIF +WVS QKDPSKINTQ+IR+FMEN+IQPPISDDKEKAEFLRSAKQSFAGIIIGNQ
Sbjct  117   RYQIFTSWVSLQKDPSKINTQQIRNFMENVIQPPISDDKEKAEFLRSAKQSFAGIIIGNQ  176

Query  181   TRSDEKFMGVFGesldesldesldesldesldeslREKQEAGKNGDWLDIFLSFVFNKKQ  240
              RSDEKFMGVF+ESL    +                EK+     GDWLDIFLSFVFNKKQ
Sbjct  177   IRSDEKFMGVFDESLKARQEA---------------EKNAEPAGGDWLDIFLSFVFNKKQ  221

Query  241   SSDLKETLNQEPRSNVEQNIATTPTPIQGLPPEARDLLDERGDFSKFTLGDMEMLDVE--  298
             SSDLKETLNQEPR++ EQN+ATT T IQGLPPEARDLLDERG+F KFTLGD+EMLDVE  
Sbjct  222   SSDLKETLNQEPRPDFEQNLATTTTDIQGLPPEARDLLDERGNFFKFTLGDVEMLDVEGV  281

Query  299   -------RLNQLLIHNNALSSMLMGSHSNIKPEKVSLLYGDNGGPEARHDWNATVGYKNQ  351
                    ++NQLLIHNNALSSMLMGSHSNI PEKVSLLYGDNGGPEARHDWNATVGYKNQ
Sbjct  282   ADKDPNYKFNQLLIHNNALSSMLMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQ  341

Query  352   QGNNVATLINAHLKNSSGLIIAGNENGINNPSFYLYKKDQLTGLEQALSQEEIQNKLGFM  411
             QGNNVATLINAHL+N+SGLIIAGNE+GI+NPSFYLYK DQLTGL QALSQEEIQNK++FM
Sbjct  342   QGNNVATLINAHLNNGSGLIIAGNEDGIKNPSFYLYKEDQLTGLKQALSQEEIQNKVDFM  401

Query  412   EFLAQNSARHVGLNNLSKEEKEKFQTEIGNFQKDPKAYLDTLGSDHIAFVSKKDQKHLAL  471
             EFLAQN+A+   L+NLS  EKEKFQTEI NFQKD KAYLD+LG+DHIAFVSKKD KHLAL
Sbjct  402   EFLAQNNAK---LDNLSEKEKEKFQTEIENFQKDRKAYLDALGNDHIAFVSKKDPKHLAL  458

Query  472   VTEFGNGELSYTLKDYGKKPDRALDRETKTTLQGNLKDDGVMFVNYSNFKYTNASKSPNE  531
             VTEFGNGELSYTLKDYGKK D+ALD ETKTTLQG+LK DGVMFVNYSNFKYTNASKSPN 
Sbjct  459   VTEFGNGELSYTLKDYGKKQDKALDGETKTTLQGSLKYDGVMFVNYSNFKYTNASKSPNK  518

Query  532   GIGATNGVSHLEANFSKVAVFNLPDLNGLAVSSFARRNLEDKLAAKGLSGKESNKIIKDF  591
             G+G+TNGVSHLEANFSKVAVFNLP+LN LA++++ RR+LEDKL AKGLS +E+NK+IKDF
Sbjct  519   GLGTTNGVSHLEANFSKVAVFNLPNLNNLAITNYIRRDLEDKLWAKGLSPQEANKLIKDF  578

Query  592   LNSNKELLEKVLNFNKAVAEAKNTGNYGGVKKAQKDLEKSIRKRELLEKEVTKQFESKSG  651
             LNSNKE++ KV NFNKAVAEAKNTGNY+ VKKAQKDLEKS+RKRE LEKEV+K++ES+++
Sbjct  579   LNSNKEMVGKVSNFNKAVAEAKNTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRND  638

Query  652   NKNKMEAKAQANSQKDEIFKLINEGAYKEARIIAYAQNLKGIRREL--------REL---  700
             NKN+MEAKAQANSQKD IF LI++ A KEAR+ ++  NLKG+R EL        ++L   
Sbjct  639   NKNRMEAKAQANSQKDKIFALISQEASKEARVATFDPNLKGVRSELSDKLENINKNLKDF  698

Query  701   --------------FDKIGNINKNLKD-----------------FNQSFDALKSGKNKDF  729
                           F K  +  K LKD                 +N +++ +K+GKNKDF
Sbjct  699   GKSFDELKSGKNNDFSKAEETLKALKDSVKDLGINPEWISKIENLNAALNDFKNGKNKDF  758

Query  730   SKVEETLKALKSSVKDLNINPEWISKVENLNVALNEFKNGKNKDFSKVTQAKSDLENSIK  789
             SKV ++   L +S+KD+ IN     KV+NLN A++E+K     DFSKV QA ++L N   
Sbjct  759   SKVTQAKSDLENSIKDVIINQKITDKVDNLNQAVSEIKL--TGDFSKVEQALAELKNLSL  816

Query  790   DVHINQQITDKVDNLNQAVLVAKA---------TGDFSGVEQAL----------------  824
             D+  N ++   V N  ++ LV+++         T +FS++ + L                
Sbjct  817   DLGKNSDLQKSVKNGVNGTLVSNGLSKTEATTLTKNFSDIRKELNEKLFGNSNNNNNGLK  876

Query  825   -------AGLKNFNVGKNSDRSEPIYA--------TIDDL-DGSSPLKRYAKVDDLSKV-  867
                    A +++ + G+ +   EPIYA         ID+L +++S+++R  K+D ++K+ 
Sbjct  877   NNTEPIYAQVNKKKTGQATSPEEPIYAQVAKKVSAKIDQLNEATSAINR--KIDRINKIA  934

Query  868   ------------GQSDSPEPIYANLG------GSSPLKRHAKVDDLSKVGLSREQELTQK  909
                         G+S SPEPIYA ++      ++ PL+R A V+DLSKVGLSREQELT++
Sbjct  935   SAGKGVGGFSGAGRSASPEPIYATIDFDEANQAGFPLRRSAAVNDLSKVGLSREQELTRR  994

Query  910   IGNLNQAVSEAKAGSFGNLEQTMDGLKDSTKKNVVNLWFEGARKVPISLPSSQAKLDNYA  969
             IG+L+QAVSEAK+G FGNLEQ +D LKDSTKKN ++LW E+A++VP SL   QAKLDNYA
Sbjct  995   IGDLSQAVSEAKTGHFGNLEQKIDELKDSTKKNALKLWVESAKQVPTSL---QAKLDNYA  1051

Query  970   TNSHTRINSNVKNGTVNEKATIMLTQKNPEWLKLVNDKIVAHNVGSTPLSDYDKIGFNQK  1029
             TNSHTRINSNV++GT+NEKAT MLTQKNPEWLKLVNDKIVAHNVGS+PLS YDKIGFNQK
Sbjct  1052  TNSHTRINSNVQSGTINEKATGMLTQKNPEWLKLVNDKIVAHNVGSAPLSAYDKIGFNQK  1111

Query  1030  NMKDYSDSFKFSIKLSNAVKNIKSGFVQCLTDCISAGSYSPKKA--EHGV----TKSGFQ  1083
             NMKDYSDSFKFS KL+NAVK+IKS+FVQ LT+ +S+GSYS  KA  EHGV    TK+GFQ
Sbjct  1112  NMKDYSDSFKFSTKLNNAVKDIKSSFVQFLTNTFSTGSYSLMKANVEHGVKNTNTKGGFQ  1171

Query  1084  KS  1085
             KS
Sbjct  1172  KS  1173

47) HPSH112_04285 in NC_017741


> NC_017366_P1|24|G24|385215791|YP_005775747.1|Helicobacter_pylori_F32|+|32443..35964|cagA|HPF32_0523|cag 
pathogenicity island 
protein
Length=1173

 Score = 1090 bits (4131),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 740/984 (76%), Positives = 853/984 (87%), Gaps = 52/984 (5%)

Query  43    FALGKKQSSDLEETLNQEPRSNVEQNIATTT-NMQGLP-QARDLLDGRGNFPKFTLGDME  100
             F + KKQSSDL ETLNQEPR++ EQN+ATTT ++QGLP +ARDLLD RGNF KFTLGD+E
Sbjct  215   FVFNKKQSSDLKETLNQEPRPDFEQNLATTTTDIQGLPPEARDLLDERGNFFKFTLGDVE  274

Query  101   MLDVEGIADIDPNYKFSQLLVHSNVLSSMSMGSHSNMEPEKVSLLYGDNGGPEARHDWNA  160
             MLDVEG+AD DPNYKF+QLL+H+N LSSM MGSHSN+EPEKVSLLYGDNGGPEARHDWNA
Sbjct  275   MLDVEGVADKDPNYKFNQLLIHNNALSSMLMGSHSNIEPEKVSLLYGDNGGPEARHDWNA  334

Query  161   TVGYKNQQGNNVATLINMHLKNGSGLVIAGNEGGINNPSFYLYKKDQLTGLEQALSQEEI  220
             TVGYKNQQGNNVATLIN HL+NGSGL+IAGNE+GI+NPSFYLYK DQLTGL QALSQEEI
Sbjct  335   TVGYKNQQGNNVATLINAHLNNGSGLIIAGNEDGIKNPSFYLYKEDQLTGLKQALSQEEI  394

Query  221   QNKVDFMEFLAQNSTKLDNLSEKEKEKFQTEIGNFQKDPKAYLDTLGSDHIAFVSKKDNK  280
             QNKVDFMEFLAQN++KLDNLSEKEKEKFQTEI NFQKD KAYLD+LG+DHIAFVSKKD K
Sbjct  395   QNKVDFMEFLAQNNAKLDNLSEKEKEKFQTEIENFQKDRKAYLDALGNDHIAFVSKKDPK  454

Query  281   HLALVTDFGNGELSYTLKDYGKEQDRALDRETKTTFQGNLKDDGVMFVNYSNFKYTNASK  340
             HLALVT+FGNGELSYTLKDYGK QD+ALD ETKTT+QG+LK DGVMFVNYSNFKYTNASK
Sbjct  455   HLALVTEFGNGELSYTLKDYGKKQDKALDGETKTTLQGSLKYDGVMFVNYSNFKYTNASK  514

Query  341   SPNEGIGATNGVSHLEANFSKVAIFNLPKLNGLVLSNHPVRQNLEDKVIAKGLSPKEANK  400
             SPN G+G+TNGVSHLEANFSKVA+FNLP+LN L ++N  +R++LEDK+ AKGLSP+EANK
Sbjct  515   SPNKGLGTTNGVSHLEANFSKVAVFNLPNLNNLAITNY-IRRDLEDKLWAKGLSPQEANK  573

Query  401   LVKDFLNSNKELVGKVSSFNKAVAEAKNTGNYGGVKKAQKDLEKSIRKREHLEKEVTKKI  460
             L+KDFLNSNKE+VGKVS+FNKAVAEAKNTGNY+ VKKAQKDLEKS+RKREHLEKEV+KK+
Sbjct  574   LIKDFLNSNKEMVGKVSNFNKAVAEAKNTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKL  633

Query  461   ESKSGNKNKMEAKAQANSQKDEIFALINQETYKEARNASYDQNLEGIRRELSDKIENINK  520
             ES+++NKN+MEAKAQANSQKD IFALI+QE+ KEAR A++D NL G+R ELSDK+ENINK
Sbjct  634   ESRNDNKNRMEAKAQANSQKDKIFALISQEASKEARVATFDPNLKGVRSELSDKLENINK  693

Query  521   NLKDFNKSFDALKSGNNKDFSKVEETLKALKSSVKDLGINPEWISKVENLSTALNEFKNG  580
             NLKDF KSFD LKSG+N+DFSK EETLKALK SVKDLGINPEWISK+ENL++ALN+FKNG
Sbjct  694   NLKDFGKSFDELKSGKNNDFSKAEETLKALKDSVKDLGINPEWISKIENLNAALNDFKNG  753

Query  581   KNKDFSKVTQAKSDLENSIKDAIVNQEITDKVDNLNQAVLVAKTACNFSMLDQALADLKN  640
             KNKDFSKVTQAKSDLENSIKD I+NQ ITDKVDNLNQAV   K + +FS ++QALA+LKN
Sbjct  754   KNKDFSKVTQAKSDLENSIKDVIINQKITDKVDNLNQAVSEIKLTGDFSKVEQALAELKN  813

Query  641   FSTDQKLDQKNESFNVGKDSDLQKSVKNRVNGTLVGNGLSKTEATTLTGKISGIkkelne  700
             +           S+++GK+SDLQKSVKN VNGTLV+NGLSKTEATTLT ++S+I+KELNE
Sbjct  814   L-----------SLDLGKNSDLQKSVKNGVNGTLVSNGLSKTEATTLTKNFSDIRKELNE  862

Query  701   k--fanfnnnnglknSAEPIYAQVNKKKTGQVTSPEGSIYDQVAKDVSAKIDKL------  752
             K    + NNNNGLKN++EPIYAQVNKKKTGQ TSPE +IY QVAK VSAKID+L      
Sbjct  863   KLFGNSNNNNNGLKNNTEPIYAQVNKKKTGQATSPEEPIYAQVAKKVSAKIDQLNEATSA  922

Query  753   --------NKIASASKGVDDFSGLGLGRLATRLDGREPIYVTID---DLGGPYTLKMHAG  801
                     NKIASA+KGV++FSG G      R  + EPIY TID      + + L+  A+
Sbjct  923   INRKIDRINKIASAGKGVGGFSGAG------RSASPEPIYATIDFDEANQAGFPLRRSAA  976

Query  802   DDNLRSKVGLSRDQELTQKIGNLNQAVLEAKAGLFVNPQQMTHLEQMMHGLKDSTKKNVV  861
              ++L SKVGLSR+QELT++IG+L+QAV EAK+G F       +LEQ ++ LKDSTKKN +
Sbjct  977   VNDL-SKVGLSREQELTRRIGDLSQAVSEAKTGHF------GNLEQKIDELKDSTKKNAL  1029

Query  862   NLWFEGAKKVPTSLQAKLDNYATNSHIHINSNVKNGAINEKATGMLTQKNPEWLKLVNDK  921
             +LW E+AK+VPTSLQAKLDNYATNSH +INSNV++G+INEKATGMLTQKNPEWLKLVNDK
Sbjct  1030  KLWVESAKQVPTSLQAKLDNYATNSHTRINSNVQSGTINEKATGMLTQKNPEWLKLVNDK  1089

Query  922   IVAHNVGSVPLSDYDKIGFNQKNMKGYSDSFKFSTKFNNAVKNIKSGFEQFLTDCFSTGS  981
             IVAHNVGS PLS YDKIGFNQKNMK+YSDSFKFSTK+NNAVK+IKS+F QFLT+ FSTGS
Sbjct  1090  IVAHNVGSAPLSAYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDIKSSFVQFLTNTFSTGS  1149

Query  982   YSPKKA--EYGV----TKSGFQKS  999
             YS  KA  E GV    TK+GFQKS
Sbjct  1150  YSLMKANVEHGVKNTNTKGGFQKS  1173