>NC_017366_P1|24|G24|385215791|YP_005775747.1|Helicobacter_pylori_F32|+|32443..35964|cagA|HPF32_0523|cag
Length = 3522
Score = 2467 bits (6365), Expect = 0.0
Identities = 1366/1494 (91%)
Strand = Plus / Plus
Query: 1058 cacaataacgctctgtcttctatgctaatggggagtcatagcagcatagaacctgaaaaa 1117
|||||||||||| | |||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 886 cacaataacgctttatcttctatgctaatggggagtcatagtaacatagaacctgaaaag 945
Query: 1118 gtttcattgttgtatggggataatggtggtcctgaagctaggcatgattggaacgccacc 1177
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 946 gtttcattattgtatggggataatggtggccctgaagctaggcatgattggaacgctacc 1005
Query: 1178 gttggttataaaaaccaacaaggcaacaatgtggccacactcatcaatgcgcatcttaaa 1237
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1006 gttggttataaaaaccaacaaggcaacaatgtggccacactcattaatgcgcatcttaat 1065
Query: 1238 aacggcagcgggttagtcatagcgggtaatggaaatgggattaacaaccctagcttctat 1297
||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 1066 aacggcagcgggttaatcatagcgggtaatgaggatgggattaaaaaccctagcttctat 1125
Query: 1298 ctctacaaaacagaccaactcacaggcttggaacaagcgttgagtcaagaagagatccaa 1357
||||| ||| ||| ||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 1126 ctctataaagaagatcaactcacaggtttgaaacaagcgttgagtcaagaagagatccaa 1185
Query: 1358 aacaaagtggatttcatggaacttcttgcacaaaacaacgctagattagataacttgagc 1417
||||||||||||||||||||| |||| ||||||||||| |||| |||||| |||||||||
Sbjct: 1186 aacaaagtggatttcatggaatttctcgcacaaaacaatgctaaattagacaacttgagc 1245
Query: 1418 gaggaagagaaagaaaagttccaaactgagattggaaatttccaaaaagaccctaaggct 1477
||| ||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 1246 gagaaagagaaagaaaaattccaaactgagattgaaaatttccaaaaagaccgtaaggct 1305
Query: 1478 tatttagactccctagggaatgatcgcattgcttttgtttctaaaaaagacc-aaaagca 1536
||||| ||| | ||||||||||||| |||||||||||||||||||||||||| |||| ||
Sbjct: 1306 tatttggacgctctagggaatgatcacattgcttttgtttctaaaaaagacccaaaa-ca 1364
Query: 1537 tttagctttggttactgagtttggtaatggggaattgagctatactctcaaagattatgg 1596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1365 tttagctttggttactgagtttggtaatggggaattgagctatactctcaaagattatgg 1424
Query: 1597 gaaaaaacaagatagagctttagatagggagacaaaaaccactcttcaaggtaacctaaa 1656
|||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 1425 gaaaaaacaagataaagctttagatggggagacaaaaaccactcttcaaggtagcctaaa 1484
Query: 1657 gcatgatggcgtgatgtttgtcaattattccaatttcaaatacaccaacgcctccaagag 1716
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1485 atatgatggcgtgatgtttgtcaattattctaatttcaaatacaccaacgcctccaagag 1544
Query: 1717 tcctgatgagggtataggcgctacgaatggcgtttcccatttggaagcaaattttagcaa 1776
|||| || ||||| ||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 1545 tcctaataagggtttaggcactacgaatggcgtttcccatttggaagcgaattttagcaa 1604
Query: 1777 ggtggctgtctttaatttgcctgatttaaatggtctcgctatctctagttttgcaaggcg 1836
|| |||||||||||||||||| |||||||| |||||||||| ||| || | ||||||
Sbjct: 1605 agtagctgtctttaatttgcctaatttaaataatctcgctatcactaattatataaggcg 1664
Query: 1837 gaatttagaggataaactgatcgctaaaggattgcccccaaaagacgctaataagatcat 1896
||||||| ||||||||| |||||||||||| ||||| |||| ||||||||| ||||
Sbjct: 1665 agatttagaagataaactgtgggctaaaggattgtccccacaagaagctaataagctcat 1724
Query: 1897 caaagactttttgaacagcaacaaggaattgcttgaaaaagctttagacttcaataaagc 1956
|||||||||||| ||||||||||| ||| || ||| ||||| || | |||||||||||||
Sbjct: 1725 caaagactttttaaacagcaacaaagaaatggttggaaaagtttcaaacttcaataaagc 1784
Query: 1957 tgtagctgaagctaaaaatacaggcaattatgacggagtgaaaaaagctcaaaaagatct 2016
|||||||||||||||||| |||||||||||||| | ||||||||||||||| ||||||||
Sbjct: 1785 tgtagctgaagctaaaaacacaggcaattatgatgaagtgaaaaaagctcagaaagatct 1844
Query: 2017 tgaaaaatctataaggaaacgagagcgtttagagcaagaaataacgaaaaaatttgagaa 2076
|||||||||| ||||||||||||||| ||||||| ||||| || |||||||||| ||||
Sbjct: 1845 tgaaaaatctctaaggaaacgagagcatttagagaaagaagtagcgaaaaaattggagag 1904
Query: 2077 caagagcggcaacaaaaataaaatggaagcgaaagttcaagctaacagccaaaaagatgg 2136
|| | || ||||||||||| ||||||||| |||| ||||||||||||||||||||||
Sbjct: 1905 cagaaacgacaacaaaaatagaatggaagcaaaagctcaagctaacagccaaaaagataa 1964
Query: 2137 gatttttaagcttatcaatgaagaggctcataaggaagcaagaatcgccgcttacgctca 2196
||||||| ||||||| | |||||||| ||||||||||||| | ||| ||| || ||
Sbjct: 1965 gatttttgcacttatcagtcaagaggctagtaaggaagcaagagtggccactttcgatcc 2024
Query: 2197 gaatcttaaaggcatcaggagggaattgtttgataaagttaaaaatctcaacaagaattt 2256
||||||||||||| ||||||| ||||||| ||||||| || ||||| |||||||||||||
Sbjct: 2025 gaatcttaaaggcgtcaggagcgaattgtctgataaacttgaaaatatcaacaagaattt 2084
Query: 2257 gaaagactttgataaatcttttgatgcgctcaaaagtggcaaaaataaggatttcagcaa 2316
||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 2085 gaaagactttggcaaatcttttgatgaactcaaaagtggcaaaaataatgatttcagcaa 2144
Query: 2317 ggcagaagaaacgctaaaagcccttgaaag-ctcggtgaaagatttgggtatcaatccag 2375
||||||||||||||||||||||||| |||| ||||||||||||||| || ||||||||||
Sbjct: 2145 ggcagaagaaacgctaaaagccctt-aaagactcggtgaaagatttaggcatcaatccag 2203
Query: 2376 aatggatttcaaaagttgaaaaccttaatgcagctttgaatgaattcaaaaatggcaaaa 2435
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 2204 aatggatttcaaaaattgaaaaccttaatgcagctttgaatgatttcaaaaatggcaaaa 2263
Query: 2436 ataaggatttcagcaaggtaacacaagcaaaaagcgaccttgaaaattccattaaggatg 2495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2264 ataaggatttcagcaaggtaacacaagcaaaaagcgaccttgaaaattccattaaggatg 2323
Query: 2496 tgctcatcaatcaagagataacggataaagttgacaatctcaatcaggctgtat 2549
|| |||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 2324 tgatcattaatcaaaagataacggataaagttgacaatctcaatcaggctgtat 2377
Score = 894 bits (2308), Expect = e-260
Identities = 488/532 (92%)
Strand = Plus / Plus
Query: 42 aacaccaagccaaacggcttttaatccacaacaatttatcaataatcttcaagtggcttt 101
||||||| |||||||| |||| ||| |||| ||||||||||||||||||||| |||||
Sbjct: 30 aacaccagaccaaacgggttttgttccgcaacgatttatcaataatcttcaagtagcttt 89
Query: 102 tattaaacttgatagtgctgtcgcttcatttgatcccgatcaaaaaccaatcgttgataa 161
||| ||| |||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 90 tatcaaagttgataacgctgtcgcttcatttgatcctgatcaaaaaccaatcgttgataa 149
Query: 162 gaacgatagggataacaggcaagcttttaatgtaatctcgcaattaagggaagaatacgc 221
||| |||| ||||||||||||||||||| | |||||||||| ||||||||||||||||
Sbjct: 150 gaatgataaggataacaggcaagcttttgagaaaatctcgcaactaagggaagaatacgc 209
Query: 222 caataaagcgatcaaaaatcccaccaaaaagaatcagtatttttcagactttatcgataa 281
||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 210 caataaagcgatcaaaaatcctgccaaaaagaatcagtatttttcagactttatcaataa 269
Query: 282 aagcaatgatttgatcaacaaaaacgatctcattgatacagattcttccacaaagagctt 341
||||||||||||||||||||| || ||||||||| | |||||||||| | |||||||
Sbjct: 270 gagcaatgatttgatcaacaaagacaatctcattgctgtagattcttccgtagagagctt 329
Query: 342 tgaaaaatttggggctcagcgttaccaaatttttatgaattgggtgtcccatcaaaaaga 401
| |||||||||| |||||||||||||||||||| || ||||||||||| |||||||||
Sbjct: 330 tcggaaatttggggatcagcgttaccaaatttttacgagttgggtgtcccttcaaaaaga 389
Query: 402 tccgtctaaaatcaacacccaaaaaatccgagattttatggaaaatatcatacaaccccc 461
|||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct: 390 tccgtctaaaatcaacacccaacaaatccgaaattttatggaaaatgtcatacaaccccc 449
Query: 462 tatctctgatgataaagaaaaagcggagtttttgaggtctgccaaacaatcttttgcagg 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tatctctgatgataaagaaaaagcggagtttttgaggtctgccaaacaatcttttgcagg 509
Query: 522 aattatcatagggaaccaaacccgatcggatgaaaaattcatgggcgttttt 573
|||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 510 aattatcatagggaaccaaatccgatcggatgaaaaattcatgggcgtgttt 561
Score = 651 bits (1681), Expect = e-187
Identities = 363/401 (91%)
Strand = Plus / Plus
Query: 3006 ctagttcgcaagcgaaattggacaattacgctactaacagccacacacgcattaatagca 3065
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3122 ctagtttgcaagcgaaattggacaattacgctactaacagccacacacgcattaatagca 3181
Query: 3066 atgtcaaaaatggaacaatcaatgaaaaagcgatcggcatgctaacgcaaaaaaaccctg 3125
||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 3182 atgtccaaagtggaacaatcaatgaaaaagcgaccggcatgctaacgcaaaaaaaccctg 3241
Query: 3126 agtggctcaagcttgtgaatgataagatagttgcgcataatgtgggaagcgctcctttgt 3185
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 3242 agtggctcaagctcgtgaatgataagatagttgcgcataatgtgggaagtgctcctttgt 3301
Query: 3186 caggttatgataaaattggattcaaccaaaagaatatgaaaggttattctgattcgttca 3245
||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 3302 cagcgtatgataaaattggattcaaccaaaagaatatgaaagattattctgactcgttca 3361
Query: 3246 ggttttccaccaagttgagcaatgccgtaaaaaacattaagtctgactttaagcaacttt 3305
||||||||||||||||| ||||||||||||| ||||||||||| |||| |||| |||
Sbjct: 3362 agttttccaccaagttgaacaatgccgtaaaagacattaagtctagctttgtgcaatttt 3421
Query: 3306 taaccgattgcatttctgcaggaacttacagcccgaagaaagc------ggaacatggag 3359
||||| || ||||| ||||| |||||||| || |||||| |||||||||||
Sbjct: 3422 taaccaatacattttctacaggatcttacagcttgatgaaagcaaatgtggaacatggag 3481
Query: 3360 ttaaaaatattaatacaaaaagtggtttccagaaatcttaa 3400
| ||||||| |||||||||| |||||||||| |||||||||
Sbjct: 3482 tcaaaaatactaatacaaaaggtggtttccaaaaatcttaa 3522
Score = 373 bits (963), Expect = e-103
Identities = 203/217 (94%)
Strand = Plus / Plus
Query: 817 tggggattggcttgatatttttttatcgtttgtatttaacaaagaacaatcttctgatct 876
||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||
Sbjct: 615 tggggattggcttgatatttttttatcatttgtatttaacaaaaaacaatcttccgatct 674
Query: 877 caaagaaacgctcaatcaagagccaaggcctcatgttgaacaaaatgtagcctctacccc 936
||||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||| |
Sbjct: 675 caaagaaacgctcaatcaagagccaaggcctgattttgaacaaaatttagccactaccac 734
Query: 937 cacccacatacaaggcttaccgcctgaagctagggatttgcttgatgaaaggggtgattt 996
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 735 caccgacatacaaggcttaccgcctgaagctagagatttgcttgatgaaaggggtaattt 794
Query: 997 ttctaaattcactcttggtgatatggaaatgttggat 1033
|| ||||||||||||||||||| |||| |||||||||
Sbjct: 795 ttttaaattcactcttggtgatgtggagatgttggat 831
Score = 272 bits (701), Expect = 5e-73
Identities = 154/176 (88%)
Strand = Plus / Plus
Query: 2782 ccctttgaaaaggtatgctaaagttgatgatctcagtaaggtagggctttcaagggagca 2841
|||||||| ||| |||| |||| ||||||||||||| ||||||||||||||||| ||
Sbjct: 2907 ccctttgagaagaagtgctgcagttaatgatctcagtaaagtagggctttcaagggaaca 2966
Query: 2842 agaattgaatgagaaaattggcaatctcaatcaggcagtgtcagaagctaaagcaggttc 2901
|||||||| | | ||||||| |||||| |||||||||||||||||||||| |||||
Sbjct: 2967 agaattgactcgtagaattggcgatctcagtcaggcagtgtcagaagctaaaacaggtca 3026
Query: 2902 ttttggcaacctagaacaaatgatggatggactcaaagattctacaaaaaagaatg 2957
|||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||
Sbjct: 3027 ttttggcaacctagaacaaaagatagatgaactcaaagattctacaaaaaagaatg 3082
Score = 75 bits (193), Expect = 9e-14
Identities = 44/49 (90%)
Strand = Plus / Plus
Query: 767 gatgaatctttgaaagagaggcaagaagcacaaaacaatggagagcctg 815
|||||||||||||||| |||||||||||| |||| |||| ||||||||
Sbjct: 562 gatgaatctttgaaagcaaggcaagaagcagaaaaaaatgcagagcctg 610
Score = 58 bits (149), Expect = 1e-08
Identities = 31/33 (94%)
Strand = Plus / Plus
Query: 2733 ggcaatcagatagccctgaacccatttacgcta 2765
||| ||||| |||||||||||||||||||||||
Sbjct: 2840 ggcgatcagctagccctgaacccatttacgcta 2872
Score = 46 bits (119), Expect = 4e-05
Identities = 25/28 (89%)
Strand = Plus / Plus
Query: 1 atggctaacgaaaccatcaatcaaacaa 28
||| ||||||||||||| |||||||||
Sbjct: 1 atgactaacgaaaccattgatcaaacaa 28
Score = 23 bits (60), Expect = 3e+02
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 2721 tcagtaaggtag 2732
||||||||||||
Sbjct: 2402 tcagtaaggtag 2413
Score = 21 bits (54), Expect = 1e+03
Identities = 11/11 (100%)
Strand = Plus / Plus
Query: 1034 tacaagttcaa 1044
|||||||||||
Sbjct: 862 tacaagttcaa 872
Score = 18 bits (45), Expect = 2e+04
Identities = 9/9 (100%)
Strand = Plus / Plus
Query: 2988 aagtgccta 2996
|||||||||
Sbjct: 3113 aagtgccta 3121
Score = 13 bits (35), Expect = 3e+05
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2972 tttgaag 2978
|||||||
Sbjct: 3084 tttgaag 3090
|
