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Homologs of insD gene of NC_008563_P4

DNA-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) insD
( - )

NC_011742
(Escherichia coli S88)

0.0

100

2) SeHA_C4722
( - )

NC_011083
(Salmonella enterica SL476)

0.0

94.5

3) ROD_48941
( - )

NC_013716
(Citrobacter rodentium ICC168)

e-298

84.4

4) EC042_pAA058
( - )

NC_017627
(Escherichia coli 042)

e-179

92.5

• Sequence Alignments

1) insD in NC_011742


>NC_008563_P4|24|G23|117625216|YP_854263.1|Escherichia_coli_APEC_O1|+|22798..23511|insD|APECO1_3512|IS2 
          Length = 714

 Score = 1402 bits (3618), Expect = 0.0
 Identities = 714/714 (100%)
 Strand = Plus / Plus

Query: 1   atggatagcgcatgtgcccttgttaccttcggacaaggaatagctccggtaagccgtgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atggatagcgcatgtgcccttgttaccttcggacaaggaatagctccggtaagccgtgtt 60

Query: 61  ctgggcgtgtcgcgtgcgcagctaacattacggatgaaggcatctgataacaagccagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ctgggcgtgtcgcgtgcgcagctaacattacggatgaaggcatctgataacaagccagat 120

Query: 121 aaacggcgtcagagacgcgatgaggctgcggatgcagaagtcttatcgcgcatcctggat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaacggcgtcagagacgcgatgaggctgcggatgcagaagtcttatcgcgcatcctggat 180

Query: 181 atcattggcgatatgccagcatatgggtatcgccgtgtctgggcgatactcagacggcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atcattggcgatatgccagcatatgggtatcgccgtgtctgggcgatactcagacggcag 240

Query: 241 tcccgaaatgaaggcttgccgttcgtgaatgcaaagcgcgtttaccgaataatgagcgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcccgaaatgaaggcttgccgttcgtgaatgcaaagcgcgtttaccgaataatgagcgaa 300

Query: 301 aacagcctgttgttgttacatgacaaaccatcacggctgcagcgggaacataaaggccga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aacagcctgttgttgttacatgacaaaccatcacggctgcagcgggaacataaaggccga 360

Query: 361 atatcggtgaaggaaagcgaccagcgttggtgttctgatggcttcgagttcggttgtgat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atatcggtgaaggaaagcgaccagcgttggtgttctgatggcttcgagttcggttgtgat 420

Query: 421 gatggcgaaaaagtccgggttacgttcgccctggactgttgtgatcgtgaagccatcgac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gatggcgaaaaagtccgggttacgttcgccctggactgttgtgatcgtgaagccatcgac 480

Query: 481 tgggcagccagtacgggaggttacgataaagcgacagtacaggatgtgatgtcaggagcg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tgggcagccagtacgggaggttacgataaagcgacagtacaggatgtgatgtcaggagcg 540

Query: 541 atagaaaaaggctttggcgataaagtgccggaagagcccatccagtggctgacagataac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 atagaaaaaggctttggcgataaagtgccggaagagcccatccagtggctgacagataac 600

Query: 601 ggttcagcgtacagagcgcatgaaacacggcagttcgccagagagctgaatctggagccc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ggttcagcgtacagagcgcatgaaacacggcagttcgccagagagctgaatctggagccc 660

Query: 661 tgcacgacggcagtcagcagtcctcagagtaatggaatggcagacggttcgtga 714
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tgcacgacggcagtcagcagtcctcagagtaatggaatggcagacggttcgtga 714

2) SeHA_C4722 in NC_011083


>NC_008563_P4|24|G23|117625216|YP_854263.1|Escherichia_coli_APEC_O1|+|22798..23511|insD|APECO1_3512|IS2 
          Length = 714

 Score = 1271 bits (3281), Expect = 0.0
 Identities = 675/715 (94%)
 Strand = Plus / Plus

Query: 1   atggatagcgcatgtgcccttgttaccttcggacaaggaatagccccggtaagccgtgtt 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1   atggatagcgcatgtgcccttgttaccttcggacaaggaatagctccggtaagccgtgtt 60

Query: 61  ctgggcgtgtcacgtgcgcagttaacattacggatgaaggcatctgataacaagccagat 120
           ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ctgggcgtgtcgcgtgcgcagctaacattacggatgaaggcatctgataacaagccagat 120

Query: 121 aaacggcgtcagaggcgcgatgaggctgcggatgcagaagtcttatcgcgcatccttgat 180
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 121 aaacggcgtcagagacgcgatgaggctgcggatgcagaagtcttatcgcgcatcctggat 180

Query: 181 atcattggcgatatgccagcatacgggtatcgccgtgtctgggcgatactcaggcggcag 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 181 atcattggcgatatgccagcatatgggtatcgccgtgtctgggcgatactcagacggcag 240

Query: 241 tcccgaaatgaaggactaccgttcgtgaatgcaaagcgtgtttaccggataatgagcgaa 300
           ||||||||||||||  | |||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 241 tcccgaaatgaaggcttgccgttcgtgaatgcaaagcgcgtttaccgaataatgagcgaa 300

Query: 301 aatagtctgttgttgttacatgacaaaccatcacgacggcagcgggaacataaaggccga 360
           || || ||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 301 aacagcctgttgttgttacatgacaaaccatcacggctgcagcgggaacataaaggccga 360

Query: 361 atatcggtgaaggaaagcgaccagcgttggtgttccgatggctttgagttcggttgcgat 420
           ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||
Sbjct: 361 atatcggtgaaggaaagcgaccagcgttggtgttctgatggcttcgagttcggttgtgat 420

Query: 421 gatggcgaaaaactgcgtgttacgttcgtcctggactgttgcgatcgtgaagccatagac 480
           |||||||||||| | || |||||||||| |||||||||||| |||||||||||||| |||
Sbjct: 421 gatggcgaaaaagtccgggttacgttcgccctggactgttgtgatcgtgaagccatcgac 480

Query: 481 tgggccgcaagcacgggaggttacgataaagcgacagtgcaggatgtgatgttaggagcg 540
           ||||| || || |||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 481 tgggcagccagtacgggaggttacgataaagcgacagtacaggatgtgatgtcaggagcg 540

Query: 541 atagaaaaacgctttggcgataaagtaccggaacagtccatccagtggctgacagataac 600
           ||||||||| |||||||||||||||| |||||| || |||||||||||||||||||||||
Sbjct: 541 atagaaaaaggctttggcgataaagtgccggaagagcccatccagtggctgacagataac 600

Query: 601 ggttcagcgtacagagcgcatgaaacacggcagttcgccagagagctgaatctgaagccc 660
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 601 ggttcagcgtacagagcgcatgaaacacggcagttcgccagagagctgaatctggagccc 660

Query: 661 tgcacaacggcaatcagtagccctcagagtaatggaatggcagaacggttcgtga 715
           ||||| |||||| |||| || ||||||||||||||||||||||| ||||||||||
Sbjct: 661 tgcacgacggcagtcagcagtcctcagagtaatggaatggcaga-cggttcgtga 714

3) ROD_48941 in NC_013716


>NC_008563_P4|24|G23|117625216|YP_854263.1|Escherichia_coli_APEC_O1|+|22798..23511|insD|APECO1_3512|IS2 
          Length = 714

 Score = 1021 bits (2635), Expect = e-298
 Identities = 593/704 (84%)
 Strand = Plus / Plus

Query: 1   atggatagcgcatacgcccttgttgccgacggacaaggaataaccctggtaagccgtatt 60
           |||||||||||||  ||||||||| ||  ||||||||||||| | | |||||||||| ||
Sbjct: 1   atggatagcgcatgtgcccttgttaccttcggacaaggaatagctccggtaagccgtgtt 60

Query: 61  ctgggagtgtcgcgtgcgtagatggtacaaaggatgaaaacgtctggtaataagtcagat 120
           ||||| |||||||||||| || |   |  | |||||||  | |||| ||| ||| |||||
Sbjct: 61  ctgggcgtgtcgcgtgcgcagctaacattacggatgaaggcatctgataacaagccagat 120

Query: 121 aaacatcgccacagacgtgatgaggctgcggatgccgaagtgttatcacgcatcctcgat 180
           ||||  || || ||||| ||||||||||||||||| ||||| ||||| |||||||| |||
Sbjct: 121 aaacggcgtcagagacgcgatgaggctgcggatgcagaagtcttatcgcgcatcctggat 180

Query: 181 atcatcagcagtatgccgacatatggctatcgtcgtgtctgaaccatactcagacgtcat 240
           |||||  ||  ||||||  ||||||| ||||| ||||||||  | ||||||||||| || 
Sbjct: 181 atcattggcgatatgccagcatatgggtatcgccgtgtctgggcgatactcagacggcag 240

Query: 241 tcccgcaacgaaggagtgccgtttgtgaatgcaaagcgcgtttaccaaataatgagcgaa 300
           ||||| || |||||  ||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 241 tcccgaaatgaaggcttgccgttcgtgaatgcaaagcgcgtttaccgaataatgagcgaa 300

Query: 301 aataacctgttgttgttacataacaaaccttcacggccgcagcgggaacataaaggtcgg 360
           || | |||||||||||||||| ||||||| ||||||| |||||||||||||||||| || 
Sbjct: 301 aacagcctgttgttgttacatgacaaaccatcacggctgcagcgggaacataaaggccga 360

Query: 361 atatcgctgaaggaaagcgactagcgttggtattccgatggcttcgggttcggttgtgat 420
           |||||| |||||||||||||| ||||||||| ||| |||||||||| |||||||||||||
Sbjct: 361 atatcggtgaaggaaagcgaccagcgttggtgttctgatggcttcgagttcggttgtgat 420

Query: 421 gatggcgaaaaactacgggttacgttcgcattggactgttgcgatagtgaagccatagac 480
           |||||||||||| | ||||||||||||||  |||||||||| ||| |||||||||| |||
Sbjct: 421 gatggcgaaaaagtccgggttacgttcgccctggactgttgtgatcgtgaagccatcgac 480

Query: 481 cgagcagcaagcacgggaggttatgacaaagctacggtgcaggatgtcatgttaggtgct 540
            | ||||| || ||||||||||| || ||||| || || |||||||| |||| ||| || 
Sbjct: 481 tgggcagccagtacgggaggttacgataaagcgacagtacaggatgtgatgtcaggagcg 540

Query: 541 gtagaaaaacgctttggagataaggtaccggaacaggctatccagtagctgaaagataac 600
            |||||||| ||||||| ||||| || |||||| || | ||||||| ||||| |||||||
Sbjct: 541 atagaaaaaggctttggcgataaagtgccggaagagcccatccagtggctgacagataac 600

Query: 601 agttcggcctatatggctcatgaaacacggcagttcgccagagagttgaatctggagccc 660
            |||| || || |  || ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 601 ggttcagcgtacagagcgcatgaaacacggcagttcgccagagagctgaatctggagccc 660

Query: 661 tgcacaacagcagtcagtagcttccaaagtaatggcatggcaga 704
           ||||| || |||||||| ||    || |||||||| ||||||||
Sbjct: 661 tgcacgacggcagtcagcagtcctcagagtaatggaatggcaga 704


 Score = 16 bits (40), Expect = 6e+04
 Identities = 8/8 (100%)
 Strand = Plus / Plus

Query: 708 gttcgtga 715
           ||||||||
Sbjct: 707 gttcgtga 714

4) EC042_pAA058 in NC_017627


>NC_008563_P4|24|G23|117625216|YP_854263.1|Escherichia_coli_APEC_O1|+|22798..23511|insD|APECO1_3512|IS2 
          Length = 714

 Score = 625 bits (1613), Expect = e-179
 Identities = 343/378 (91%)
 Strand = Plus / Plus

Query: 303 accatcacgacagcagcgggaacataaaggccgaatatcggtgacggaaagcaaccagcg 362
           ||||||||| | |||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 327 accatcacggctgcagcgggaacataaaggccgaatatcggtgaaggaaagcgaccagcg 386

Query: 363 ttggtgttccgatggctttgagtttggttgcgatgatagcgaaaaactgcgtgttacgtt 422
           ||||||||| |||||||| ||||| ||||| |||||| |||||||| | || ||||||||
Sbjct: 387 ttggtgttctgatggcttcgagttcggttgtgatgatggcgaaaaagtccgggttacgtt 446

Query: 423 ctccctagactgttgcgatcgtgaagccatagactgagccgcaagcacgggaggttacga 482
           | |||| |||||||| |||||||||||||| ||||| || || || ||||||||||||||
Sbjct: 447 cgccctggactgttgtgatcgtgaagccatcgactgggcagccagtacgggaggttacga 506

Query: 483 taaagcgacagtgcaggatgtcatgttaggagcgatagaaaaacgctttggcgataaagt 542
           |||||||||||| |||||||| |||| |||||||||||||||| ||||||||||||||||
Sbjct: 507 taaagcgacagtacaggatgtgatgtcaggagcgatagaaaaaggctttggcgataaagt 566

Query: 543 actggaacagtccatccagtggctgacagataacggttcagcgtatagagcgcatgaaac 602
            | |||| || |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 567 gccggaagagcccatccagtggctgacagataacggttcagcgtacagagcgcatgaaac 626

Query: 603 acggcagttcgccagagagttgaatcaggagccctgcgcaacggcaatcagcagtcctca 662
           ||||||||||||||||||| |||||| |||||||||| | |||||| |||||||||||||
Sbjct: 627 acggcagttcgccagagagctgaatctggagccctgcacgacggcagtcagcagtcctca 686

Query: 663 gagtaatcgaatggcaga 680
           ||||||| ||||||||||
Sbjct: 687 gagtaatggaatggcaga 704


 Score = 494 bits (1275), Expect = e-140
 Identities = 260/275 (95%)
 Strand = Plus / Plus

Query: 1   atggatagcgcatgtgcccttgttaccttcggacaaggaatagccccagtaagccgtgtt 60
           |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 1   atggatagcgcatgtgcccttgttaccttcggacaaggaatagctccggtaagccgtgtt 60

Query: 61  ctgggcgtgtcacgtgcgcagttaacattacggatgaagtcatctgataataatccagat 120
           ||||||||||| ||||||||| ||||||||||||||||| |||||||||| || ||||||
Sbjct: 61  ctgggcgtgtcgcgtgcgcagctaacattacggatgaaggcatctgataacaagccagat 120

Query: 121 aaacggcgtcagaggcgcgatgaggctgcggatgcagaagtcttatcgcgcatcctggat 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaacggcgtcagagacgcgatgaggctgcggatgcagaagtcttatcgcgcatcctggat 180

Query: 181 atcattggcgatatgccagcatacgggtatcgccgtatctgggcgatactcaggcggcag 240
           ||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||
Sbjct: 181 atcattggcgatatgccagcatatgggtatcgccgtgtctgggcgatactcagacggcag 240

Query: 241 tcccgaaatgaagtactaccgttcgtgaatgcaaa 275
           |||||||||||||   | |||||||||||||||||
Sbjct: 241 tcccgaaatgaaggcttgccgttcgtgaatgcaaa 275


 Score = 47 bits (122), Expect = 2e-05
 Identities = 25/27 (93%)
 Strand = Plus / Plus

Query: 276 ccggataatgagcgaaaatagcctgtt 302
           ||| |||||||||||||| ||||||||
Sbjct: 285 ccgaataatgagcgaaaacagcctgtt 311


 Score = 18 bits (46), Expect = 1e+04
 Identities = 9/9 (100%)
 Strand = Plus / Plus

Query: 683 ggttcgtga 691
           |||||||||
Sbjct: 706 ggttcgtga 714