Homolog Viewer

PAthogenisity Island DataBase (PAI DB)

Home PAIs REIs Genomes Search Links

Homologs of hpa1 gene of NC_003902_P1

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) XC_3002
( YP_244070.1 )

Hpa1 protein

NC_007086
(Xanthomonas campestris 8004)

3e-31

100

2) hpa1
( NP_636614.1 )

Hpa1 protein

NC_003902
(Xanthomonas campestris ATCC 33913)

3e-31

100

3) hpa1
( YP_005636509.1 )

harpin-like protein Hpa1 (XopA)

NC_017271
(Xanthomonas campestris 756C)

3e-31

• Sequence Alignments

1) XC_3002 in NC_007086


> NC_003902_P1|24|G24|21230697|NP_636614.1|Xanthomonas_campestris_pv._campestris_str._ATCC_33913|-|21780..22145|hpa1|XCC1240|Hpa1 
protein
Length=121

 Score =  128 bits (469),  Expect = 3e-31, Method: Compositional matrix adjust.
 Identities = 121/121 (100%), Positives = 121/121 (100%), Gaps = 0/121 (0%)

Query  1    MDSSIGNKFSNFINLQTMGIGPQQTQNSSQRSPSADSEQQLDQLLAMFIMMMLQQSQGSD  60
            MDSSIGNKFSNFINLQTMGIGPQQTQNSSQRSPSADSEQQLDQLLAMFIMMMLQQSQGSD
Sbjct  1    MDSSIGNKFSNFINLQTMGIGPQQTQNSSQRSPSADSEQQLDQLLAMFIMMMLQQSQGSD  60

Query  61   ADQECGDEQPQSGQQDGVSPltqmlmqivmqlmqnqggagmggtslgggFNANLSSITGQ  120
            ADQECGDEQPQSGQQDGVSPLTQMLMQIVMQLMQNQGGAGMGGTSLGGGFNANLSSITGQ
Sbjct  61   ADQECGDEQPQSGQQDGVSPLTQMLMQIVMQLMQNQGGAGMGGTSLGGGFNANLSSITGQ  120

Query  121  A  121
            A
Sbjct  121  A  121

2) hpa1 in NC_003902


> NC_003902_P1|24|G24|21230697|NP_636614.1|Xanthomonas_campestris_pv._campestris_str._ATCC_33913|-|21780..22145|hpa1|XCC1240|Hpa1 
protein
Length=121

 Score =  128 bits (469),  Expect = 3e-31, Method: Compositional matrix adjust.
 Identities = 121/121 (100%), Positives = 121/121 (100%), Gaps = 0/121 (0%)

Query  1    MDSSIGNKFSNFINLQTMGIGPQQTQNSSQRSPSADSEQQLDQLLAMFIMMMLQQSQGSD  60
            MDSSIGNKFSNFINLQTMGIGPQQTQNSSQRSPSADSEQQLDQLLAMFIMMMLQQSQGSD
Sbjct  1    MDSSIGNKFSNFINLQTMGIGPQQTQNSSQRSPSADSEQQLDQLLAMFIMMMLQQSQGSD  60

Query  61   ADQECGDEQPQSGQQDGVSPltqmlmqivmqlmqnqggagmggtslgggFNANLSSITGQ  120
            ADQECGDEQPQSGQQDGVSPLTQMLMQIVMQLMQNQGGAGMGGTSLGGGFNANLSSITGQ
Sbjct  61   ADQECGDEQPQSGQQDGVSPLTQMLMQIVMQLMQNQGGAGMGGTSLGGGFNANLSSITGQ  120

Query  121  A  121
            A
Sbjct  121  A  121

3) hpa1 in NC_017271


> NC_003902_P1|24|G24|21230697|NP_636614.1|Xanthomonas_campestris_pv._campestris_str._ATCC_33913|-|21780..22145|hpa1|XCC1240|Hpa1 
protein
Length=121

 Score =  128 bits (468),  Expect = 3e-31, Method: Compositional matrix adjust.
 Identities = 120/121 (99%), Positives = 121/121 (100%), Gaps = 0/121 (0%)

Query  1    MDSSIGNKFSNFINLQTMGIGPQQTQKSSQRSPSADSEQQLDQLLAMFIMMMLQQSQGSD  60
            MDSSIGNKFSNFINLQTMGIGPQQTQ+SSQRSPSADSEQQLDQLLAMFIMMMLQQSQGSD
Sbjct  1    MDSSIGNKFSNFINLQTMGIGPQQTQNSSQRSPSADSEQQLDQLLAMFIMMMLQQSQGSD  60

Query  61   ADQECGDEQPQSGQQDGVSPltqmlmqivmqlmqnqggagmggtslgggFNANLSSITGQ  120
            ADQECGDEQPQSGQQDGVSPLTQMLMQIVMQLMQNQGGAGMGGTSLGGGFNANLSSITGQ
Sbjct  61   ADQECGDEQPQSGQQDGVSPLTQMLMQIVMQLMQNQGGAGMGGTSLGGGFNANLSSITGQ  120

Query  121  A  121
            A
Sbjct  121  A  121