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Homologs of sipD gene of NC_003198_P5

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) SSPA2555
( YP_002143400.1 )

pathogenicity island 1 effector protein

NC_011147
(Salmonella enterica AKU12601)

8e-138

100

2) sipD
( YP_151910.1 )

pathogenicity island 1 effector protein

NC_006511
(Salmonella enterica ATCC 9150)

8e-138

100

3) sipD
( NP_457277.1 )

pathogenicity island 1 effector protein

NC_003198
(Salmonella enterica CT18)

8e-138

100

4) sipD
( NP_806486.1 )

pathogenicity island 1 effector protein

NC_004631
(Salmonella enterica Ty2)

8e-138

100

5) TY21A_14070
( YP_007927056.1 )

pathogenicity island 1 effector protein

NC_021176
(Salmonella enterica Ty21a)

8e-138

100

6) SE451236_20510
( YP_008267089.1 )

cell invasion protein SipD

NC_021820
(Salmonella enterica 08-1736)

5e-137

7) sipD
( YP_005238992.1 )

translocation machinery component

NC_016856
(Salmonella enterica 14028S)

5e-137

8) sipD
( YP_005398246.1 )

pathogenicity island 1 effector protein

NC_017046
(Salmonella enterica 798)

5e-137

9) CFSAN001921_02660
( YP_008253940.1 )

cell invasion protein SipD

NC_021814
(Salmonella enterica CFSAN001921)

5e-137

10) STMMW_28451
( YP_005233872.1 )

pathogenicity island 1 effector protein

NC_016854
(Salmonella enterica D23580)

5e-137

11) sipD
( NP_461804.1 )

translocation machinery component

NC_003197
(Salmonella enterica LT2)

5e-137

12) sipD
( YP_005182751.1 )

pathogenicity island 1 effector protein

NC_016810
(Salmonella enterica SL1344)

5e-137

13) sipD
( YP_005243864.1 )

translocation machinery component

NC_016857
(Salmonella enterica ST4/74)

5e-137

14) STMDT12_C29320
( YP_005248628.1 )

translocation machinery component

NC_016860
(Salmonella enterica T000240)

5e-137

15) STU288_14570
( YP_007904005.1 )

cell invasion protein SipD

NC_021151
(Salmonella enterica U288)

5e-137

16) sipD
( YP_005253372.1 )

translocation machinery component

NC_016863
(Salmonella enterica UK-1)

5e-137

17) STBHUCCB_29290
( YP_005218429.1 )

Cell invasion protein sipD

NC_016832
(Salmonella enterica P-stx-12)

1e-136

18) SeSA_A3036
( YP_002115836.1 )

type III effector protein IpaD/SipD/SspD

NC_011094
(Salmonella enterica CVM19633)

2e-136

19) CFSAN001992_19110
( YP_007473538.1 )

cell invasion protein SipD

NC_020307
(Salmonella enterica CFSAN001992)

1e-133

20) SARI_00090
( YP_001569185.1 )

hypothetical protein

NC_010067
(Salmonella enterica RSK2980)

2e-130

21) SEEB0189_05755
( YP_008307502.1 )

cell invasion protein SipD

NC_021844
(Salmonella enterica CFSAN000189)

4e-129

22) sipD
( YP_002227627.1 )

pathogenicity island 1 effector protein

NC_011274
(Salmonella enterica 287/91)

5e-129

23) SBOV29091
( YP_008506731.1 )

hypothetical protein

NC_022241
(Salmonella enterica 3114)

5e-129

24) SEEH1578_23225
( YP_008248691.1 )

cell invasion protein SipD

NC_021810
(Salmonella enterica 41578)

5e-129

25) SU5_03364
( YP_006088971.1 )

Cell invasion protein SipD

NC_017623
(Salmonella enterica B182)

5e-129

26) sipD
( YP_008482446.1 )

pathogenicity island 1 effector protein

NC_022221
(Salmonella enterica CDC1983-67)

5e-129

27) CFSAN002069_17855
( YP_008252331.1 )

cell invasion protein SipD

NC_021812
(Salmonella enterica CFSAN002069)

5e-129

28) sipD
( YP_002244796.1 )

pathogenicity island 1 effector protein

NC_011294
(Salmonella enterica P125109)

5e-129

29) sipD
( YP_002638459.1 )

cell invasion protein

NC_012125
(Salmonella enterica RKS4594)

5e-129

30) sipD
( YP_005213991.1 )

pathogenicity island 1 effector protein

NC_016831
(Salmonella enterica RKS5078)

5e-129

31) I137_13725
( YP_008382146.1 )

cell invasion protein SipD

NC_021984
(Salmonella enterica S06004)

5e-129

32) SNSL254_A3088
( YP_008083642.1 )

cell invasion protein SipD

NC_011080
(Salmonella enterica SL254)

5e-129

33) SeHA_C3073
( YP_008083697.1 )

type III effector protein IpaD/SipD/SspD

NC_011083
(Salmonella enterica SL476)

5e-129

34) SN31241_39750
( YP_008361890.1 )

Cell invasion protein sipD

NC_021902
(Salmonella enterica USMARC-S3124.1)

5e-129

35) sipD
( YP_217802.1 )

cell invasion protein

NC_006905
(Salmonella enterica SC-B67)

2e-128

36) SeAg_B3005
( YP_002147781.1 )

type III effector protein IpaD/SipD/SspD

NC_011149
(Salmonella enterica SL483)

2e-123

37) A464_2907
( YP_008323501.1 )

Cell invasion protein SipD

NC_021870
(Salmonella bongori N268-08)

4e-123

38) sipD
( YP_004731323.1 )

pathogenicity island 1 effector protein

NC_015761
(Salmonella bongori NCTC 12419)

3e-122

39) CFSAN002050_20715
( YP_008262014.1 )

cell invasion protein SipD

NC_021818
(Salmonella enterica CFSAN002050)

2e-121

40) SPAB_03585
( YP_001589759.1 )

hypothetical protein

NC_010102
(Salmonella enterica SGSC4150; SPB7)

3e-114

41) sipD
( NP_902287.1 )

pathogenicity island 1 effector protein

NC_005085
(Chromobacterium violaceum ATCC 12472)

7e-63

• Sequence Alignments

1) SSPA2555 in NC_011147


> NC_003198_P5|24|G24|16761660|NP_457277.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|20030..21052|sipD|-|pathogenicity 
island 1 effector protein
Length=340

 Score =  483 bits (1820),  Expect = 8e-138, Method: Compositional matrix adjust.
 Identities = 340/340 (100%), Positives = 340/340 (100%), Gaps = 0/340 (0%)

Query  1    MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSqaatkiqqaqq  60
            MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSQAATKIQQAQQ
Sbjct  1    MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSQAATKIQQAQQ  60

Query  61   tlqstPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSTFSAPTSALFSAS  120
            TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSTFSAPTSALFSAS
Sbjct  61   TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSTFSAPTSALFSAS  120

Query  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP  180
            PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP
Sbjct  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP  180

Query  181  GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSGMTTATKAEAEQWIKELNL  240
            GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSGMTTATKAEAEQWIKELNL
Sbjct  181  GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSGMTTATKAEAEQWIKELNL  240

Query  241  PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGSGSALELDNAKYQAWQSGFKAQEENlkt  300
            PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGSGSALELDNAKYQAWQSGFKAQEENLKT
Sbjct  241  PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGSGSALELDNAKYQAWQSGFKAQEENLKT  300

Query  301  tlqtltqkYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  340
            TLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG
Sbjct  301  TLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  340

2) sipD in NC_006511


> NC_003198_P5|24|G24|16761660|NP_457277.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|20030..21052|sipD|-|pathogenicity 
island 1 effector protein
Length=340

 Score =  483 bits (1820),  Expect = 8e-138, Method: Compositional matrix adjust.
 Identities = 340/340 (100%), Positives = 340/340 (100%), Gaps = 0/340 (0%)

Query  1    MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSqaatkiqqaqq  60
            MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSQAATKIQQAQQ
Sbjct  1    MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSQAATKIQQAQQ  60

Query  61   tlqstPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSTFSAPTSALFSAS  120
            TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSTFSAPTSALFSAS
Sbjct  61   TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSTFSAPTSALFSAS  120

Query  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP  180
            PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP
Sbjct  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP  180

Query  181  GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSGMTTATKAEAEQWIKELNL  240
            GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSGMTTATKAEAEQWIKELNL
Sbjct  181  GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSGMTTATKAEAEQWIKELNL  240

Query  241  PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGSGSALELDNAKYQAWQSGFKAQEENlkt  300
            PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGSGSALELDNAKYQAWQSGFKAQEENLKT
Sbjct  241  PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGSGSALELDNAKYQAWQSGFKAQEENLKT  300

Query  301  tlqtltqkYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  340
            TLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG
Sbjct  301  TLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  340

3) sipD in NC_003198


> NC_003198_P5|24|G24|16761660|NP_457277.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|20030..21052|sipD|-|pathogenicity 
island 1 effector protein
Length=340

 Score =  483 bits (1820),  Expect = 8e-138, Method: Compositional matrix adjust.
 Identities = 340/340 (100%), Positives = 340/340 (100%), Gaps = 0/340 (0%)

Query  1    MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSqaatkiqqaqq  60
            MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSQAATKIQQAQQ
Sbjct  1    MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSQAATKIQQAQQ  60

Query  61   tlqstPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSTFSAPTSALFSAS  120
            TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSTFSAPTSALFSAS
Sbjct  61   TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSTFSAPTSALFSAS  120

Query  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP  180
            PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP
Sbjct  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP  180

Query  181  GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSGMTTATKAEAEQWIKELNL  240
            GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSGMTTATKAEAEQWIKELNL
Sbjct  181  GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSGMTTATKAEAEQWIKELNL  240

Query  241  PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGSGSALELDNAKYQAWQSGFKAQEENlkt  300
            PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGSGSALELDNAKYQAWQSGFKAQEENLKT
Sbjct  241  PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGSGSALELDNAKYQAWQSGFKAQEENLKT  300

Query  301  tlqtltqkYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  340
            TLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG
Sbjct  301  TLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  340

4) TY21A_14070 in NC_021176


> NC_003198_P5|24|G24|16761660|NP_457277.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|20030..21052|sipD|-|pathogenicity 
island 1 effector protein
Length=340

 Score =  483 bits (1820),  Expect = 8e-138, Method: Compositional matrix adjust.
 Identities = 340/340 (100%), Positives = 340/340 (100%), Gaps = 0/340 (0%)

Query  1    MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSqaatkiqqaqq  60
            MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSQAATKIQQAQQ
Sbjct  1    MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSQAATKIQQAQQ  60

Query  61   tlqstPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSTFSAPTSALFSAS  120
            TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSTFSAPTSALFSAS
Sbjct  61   TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSTFSAPTSALFSAS  120

Query  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP  180
            PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP
Sbjct  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP  180

Query  181  GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSGMTTATKAEAEQWIKELNL  240
            GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSGMTTATKAEAEQWIKELNL
Sbjct  181  GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSGMTTATKAEAEQWIKELNL  240

Query  241  PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGSGSALELDNAKYQAWQSGFKAQEENlkt  300
            PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGSGSALELDNAKYQAWQSGFKAQEENLKT
Sbjct  241  PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGSGSALELDNAKYQAWQSGFKAQEENLKT  300

Query  301  tlqtltqkYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  340
            TLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG
Sbjct  301  TLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  340

5) sipD in NC_004631


> NC_003198_P5|24|G24|16761660|NP_457277.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|20030..21052|sipD|-|pathogenicity 
island 1 effector protein
Length=340

 Score =  483 bits (1820),  Expect = 8e-138, Method: Compositional matrix adjust.
 Identities = 340/340 (100%), Positives = 340/340 (100%), Gaps = 0/340 (0%)

Query  1    MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSqaatkiqqaqq  60
            MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSQAATKIQQAQQ
Sbjct  1    MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSQAATKIQQAQQ  60

Query  61   tlqstPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSTFSAPTSALFSAS  120
            TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSTFSAPTSALFSAS
Sbjct  61   TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSTFSAPTSALFSAS  120

Query  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP  180
            PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP
Sbjct  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP  180

Query  181  GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSGMTTATKAEAEQWIKELNL  240
            GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSGMTTATKAEAEQWIKELNL
Sbjct  181  GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSGMTTATKAEAEQWIKELNL  240

Query  241  PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGSGSALELDNAKYQAWQSGFKAQEENlkt  300
            PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGSGSALELDNAKYQAWQSGFKAQEENLKT
Sbjct  241  PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGSGSALELDNAKYQAWQSGFKAQEENLKT  300

Query  301  tlqtltqkYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  340
            TLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG
Sbjct  301  TLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  340

6) SE451236_20510 in NC_021820


> NC_003198_P5|24|G24|16761660|NP_457277.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|20030..21052|sipD|-|pathogenicity 
island 1 effector protein
Length=340

 Score =  480 bits (1810),  Expect = 5e-137, Method: Compositional matrix adjust.
 Identities = 299/343 (88%), Positives = 322/343 (94%), Gaps = 3/343 (0%)

Query  1    MLNIQNYSASPHPGIVAERPQTPSASEHVETAVVPSTTEHRGTDIISLSQAATKIHQAQQ  60
            MLNIQNYSASPHPGIVAERPQTPSASEH E AVVPSTTEHRGTDIISLSQAATKI+QAQQ
Sbjct  1    MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSQAATKIQQAQQ  60

Query  61   TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSAFSAPTSALFSAS  120
            TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRS+FSAPTSALFSAS
Sbjct  61   TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSTFSAPTSALFSAS  120

Query  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLLP  180
            PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWL P
Sbjct  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP  180

Query  181  GKDGNTVKLDVTSLKNDLNSLVNKYNQINSNTVLFPAQSGSGVKVATEAEARQWLSELNL  240
            GKDGNT+KL+V SLK++++SL+NKY QIN NT+LFP+Q+GSG+  AT AEA QW+ ELNL
Sbjct  181  GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSGMTTATKAEAEQWIKELNL  240

Query  241  PNSCLKSYGSGYVVTVDLTPLQKMVQDIDGLGAPGKDSKLEMDNAKYQAWQSGFKAQEEN  300
            P+SCLK+ GSGYVV VD  PL KMV D++G+G+   +S LE+DNAKYQAWQSGFKAQEEN
Sbjct  241  PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGS---GSALELDNAKYQAWQSGFKAQEEN  297

Query  301  MKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  343
            +KTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG
Sbjct  298  LKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  340

7) sipD in NC_016856


> NC_003198_P5|24|G24|16761660|NP_457277.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|20030..21052|sipD|-|pathogenicity 
island 1 effector protein
Length=340

 Score =  480 bits (1810),  Expect = 5e-137, Method: Compositional matrix adjust.
 Identities = 299/343 (88%), Positives = 322/343 (94%), Gaps = 3/343 (0%)

Query  1    MLNIQNYSASPHPGIVAERPQTPSASEHVETAVVPSTTEHRGTDIISLSQAATKIHQAQQ  60
            MLNIQNYSASPHPGIVAERPQTPSASEH E AVVPSTTEHRGTDIISLSQAATKI+QAQQ
Sbjct  1    MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSQAATKIQQAQQ  60

Query  61   TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSAFSAPTSALFSAS  120
            TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRS+FSAPTSALFSAS
Sbjct  61   TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSTFSAPTSALFSAS  120

Query  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLLP  180
            PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWL P
Sbjct  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP  180

Query  181  GKDGNTVKLDVTSLKNDLNSLVNKYNQINSNTVLFPAQSGSGVKVATEAEARQWLSELNL  240
            GKDGNT+KL+V SLK++++SL+NKY QIN NT+LFP+Q+GSG+  AT AEA QW+ ELNL
Sbjct  181  GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSGMTTATKAEAEQWIKELNL  240

Query  241  PNSCLKSYGSGYVVTVDLTPLQKMVQDIDGLGAPGKDSKLEMDNAKYQAWQSGFKAQEEN  300
            P+SCLK+ GSGYVV VD  PL KMV D++G+G+   +S LE+DNAKYQAWQSGFKAQEEN
Sbjct  241  PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGS---GSALELDNAKYQAWQSGFKAQEEN  297

Query  301  MKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  343
            +KTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG
Sbjct  298  LKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  340

8) sipD in NC_017046


> NC_003198_P5|24|G24|16761660|NP_457277.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|20030..21052|sipD|-|pathogenicity 
island 1 effector protein
Length=340

 Score =  480 bits (1810),  Expect = 5e-137, Method: Compositional matrix adjust.
 Identities = 299/343 (88%), Positives = 322/343 (94%), Gaps = 3/343 (0%)

Query  1    MLNIQNYSASPHPGIVAERPQTPSASEHVETAVVPSTTEHRGTDIISLSQAATKIHQAQQ  60
            MLNIQNYSASPHPGIVAERPQTPSASEH E AVVPSTTEHRGTDIISLSQAATKI+QAQQ
Sbjct  1    MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSQAATKIQQAQQ  60

Query  61   TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSAFSAPTSALFSAS  120
            TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRS+FSAPTSALFSAS
Sbjct  61   TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSTFSAPTSALFSAS  120

Query  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLLP  180
            PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWL P
Sbjct  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP  180

Query  181  GKDGNTVKLDVTSLKNDLNSLVNKYNQINSNTVLFPAQSGSGVKVATEAEARQWLSELNL  240
            GKDGNT+KL+V SLK++++SL+NKY QIN NT+LFP+Q+GSG+  AT AEA QW+ ELNL
Sbjct  181  GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSGMTTATKAEAEQWIKELNL  240

Query  241  PNSCLKSYGSGYVVTVDLTPLQKMVQDIDGLGAPGKDSKLEMDNAKYQAWQSGFKAQEEN  300
            P+SCLK+ GSGYVV VD  PL KMV D++G+G+   +S LE+DNAKYQAWQSGFKAQEEN
Sbjct  241  PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGS---GSALELDNAKYQAWQSGFKAQEEN  297

Query  301  MKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  343
            +KTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG
Sbjct  298  LKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  340

9) STMMW_28451 in NC_016854


> NC_003198_P5|24|G24|16761660|NP_457277.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|20030..21052|sipD|-|pathogenicity 
island 1 effector protein
Length=340

 Score =  480 bits (1810),  Expect = 5e-137, Method: Compositional matrix adjust.
 Identities = 299/343 (88%), Positives = 322/343 (94%), Gaps = 3/343 (0%)

Query  1    MLNIQNYSASPHPGIVAERPQTPSASEHVETAVVPSTTEHRGTDIISLSQAATKIHQAQQ  60
            MLNIQNYSASPHPGIVAERPQTPSASEH E AVVPSTTEHRGTDIISLSQAATKI+QAQQ
Sbjct  1    MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSQAATKIQQAQQ  60

Query  61   TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSAFSAPTSALFSAS  120
            TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRS+FSAPTSALFSAS
Sbjct  61   TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSTFSAPTSALFSAS  120

Query  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLLP  180
            PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWL P
Sbjct  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP  180

Query  181  GKDGNTVKLDVTSLKNDLNSLVNKYNQINSNTVLFPAQSGSGVKVATEAEARQWLSELNL  240
            GKDGNT+KL+V SLK++++SL+NKY QIN NT+LFP+Q+GSG+  AT AEA QW+ ELNL
Sbjct  181  GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSGMTTATKAEAEQWIKELNL  240

Query  241  PNSCLKSYGSGYVVTVDLTPLQKMVQDIDGLGAPGKDSKLEMDNAKYQAWQSGFKAQEEN  300
            P+SCLK+ GSGYVV VD  PL KMV D++G+G+   +S LE+DNAKYQAWQSGFKAQEEN
Sbjct  241  PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGS---GSALELDNAKYQAWQSGFKAQEEN  297

Query  301  MKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  343
            +KTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG
Sbjct  298  LKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  340

10) sipD in NC_003197


> NC_003198_P5|24|G24|16761660|NP_457277.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|20030..21052|sipD|-|pathogenicity 
island 1 effector protein
Length=340

 Score =  480 bits (1810),  Expect = 5e-137, Method: Compositional matrix adjust.
 Identities = 299/343 (88%), Positives = 322/343 (94%), Gaps = 3/343 (0%)

Query  1    MLNIQNYSASPHPGIVAERPQTPSASEHVETAVVPSTTEHRGTDIISLSQAATKIHQAQQ  60
            MLNIQNYSASPHPGIVAERPQTPSASEH E AVVPSTTEHRGTDIISLSQAATKI+QAQQ
Sbjct  1    MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSQAATKIQQAQQ  60

Query  61   TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSAFSAPTSALFSAS  120
            TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRS+FSAPTSALFSAS
Sbjct  61   TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSTFSAPTSALFSAS  120

Query  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLLP  180
            PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWL P
Sbjct  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP  180

Query  181  GKDGNTVKLDVTSLKNDLNSLVNKYNQINSNTVLFPAQSGSGVKVATEAEARQWLSELNL  240
            GKDGNT+KL+V SLK++++SL+NKY QIN NT+LFP+Q+GSG+  AT AEA QW+ ELNL
Sbjct  181  GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSGMTTATKAEAEQWIKELNL  240

Query  241  PNSCLKSYGSGYVVTVDLTPLQKMVQDIDGLGAPGKDSKLEMDNAKYQAWQSGFKAQEEN  300
            P+SCLK+ GSGYVV VD  PL KMV D++G+G+   +S LE+DNAKYQAWQSGFKAQEEN
Sbjct  241  PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGS---GSALELDNAKYQAWQSGFKAQEEN  297

Query  301  MKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  343
            +KTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG
Sbjct  298  LKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  340

11) sipD in NC_016810


> NC_003198_P5|24|G24|16761660|NP_457277.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|20030..21052|sipD|-|pathogenicity 
island 1 effector protein
Length=340

 Score =  480 bits (1810),  Expect = 5e-137, Method: Compositional matrix adjust.
 Identities = 299/343 (88%), Positives = 322/343 (94%), Gaps = 3/343 (0%)

Query  1    MLNIQNYSASPHPGIVAERPQTPSASEHVETAVVPSTTEHRGTDIISLSQAATKIHQAQQ  60
            MLNIQNYSASPHPGIVAERPQTPSASEH E AVVPSTTEHRGTDIISLSQAATKI+QAQQ
Sbjct  1    MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSQAATKIQQAQQ  60

Query  61   TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSAFSAPTSALFSAS  120
            TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRS+FSAPTSALFSAS
Sbjct  61   TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSTFSAPTSALFSAS  120

Query  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLLP  180
            PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWL P
Sbjct  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP  180

Query  181  GKDGNTVKLDVTSLKNDLNSLVNKYNQINSNTVLFPAQSGSGVKVATEAEARQWLSELNL  240
            GKDGNT+KL+V SLK++++SL+NKY QIN NT+LFP+Q+GSG+  AT AEA QW+ ELNL
Sbjct  181  GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSGMTTATKAEAEQWIKELNL  240

Query  241  PNSCLKSYGSGYVVTVDLTPLQKMVQDIDGLGAPGKDSKLEMDNAKYQAWQSGFKAQEEN  300
            P+SCLK+ GSGYVV VD  PL KMV D++G+G+   +S LE+DNAKYQAWQSGFKAQEEN
Sbjct  241  PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGS---GSALELDNAKYQAWQSGFKAQEEN  297

Query  301  MKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  343
            +KTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG
Sbjct  298  LKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  340

12) sipD in NC_016857


> NC_003198_P5|24|G24|16761660|NP_457277.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|20030..21052|sipD|-|pathogenicity 
island 1 effector protein
Length=340

 Score =  480 bits (1810),  Expect = 5e-137, Method: Compositional matrix adjust.
 Identities = 299/343 (88%), Positives = 322/343 (94%), Gaps = 3/343 (0%)

Query  1    MLNIQNYSASPHPGIVAERPQTPSASEHVETAVVPSTTEHRGTDIISLSQAATKIHQAQQ  60
            MLNIQNYSASPHPGIVAERPQTPSASEH E AVVPSTTEHRGTDIISLSQAATKI+QAQQ
Sbjct  1    MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSQAATKIQQAQQ  60

Query  61   TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSAFSAPTSALFSAS  120
            TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRS+FSAPTSALFSAS
Sbjct  61   TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSTFSAPTSALFSAS  120

Query  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLLP  180
            PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWL P
Sbjct  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP  180

Query  181  GKDGNTVKLDVTSLKNDLNSLVNKYNQINSNTVLFPAQSGSGVKVATEAEARQWLSELNL  240
            GKDGNT+KL+V SLK++++SL+NKY QIN NT+LFP+Q+GSG+  AT AEA QW+ ELNL
Sbjct  181  GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSGMTTATKAEAEQWIKELNL  240

Query  241  PNSCLKSYGSGYVVTVDLTPLQKMVQDIDGLGAPGKDSKLEMDNAKYQAWQSGFKAQEEN  300
            P+SCLK+ GSGYVV VD  PL KMV D++G+G+   +S LE+DNAKYQAWQSGFKAQEEN
Sbjct  241  PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGS---GSALELDNAKYQAWQSGFKAQEEN  297

Query  301  MKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  343
            +KTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG
Sbjct  298  LKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  340

13) STMDT12_C29320 in NC_016860


> NC_003198_P5|24|G24|16761660|NP_457277.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|20030..21052|sipD|-|pathogenicity 
island 1 effector protein
Length=340

 Score =  480 bits (1810),  Expect = 5e-137, Method: Compositional matrix adjust.
 Identities = 299/343 (88%), Positives = 322/343 (94%), Gaps = 3/343 (0%)

Query  1    MLNIQNYSASPHPGIVAERPQTPSASEHVETAVVPSTTEHRGTDIISLSQAATKIHQAQQ  60
            MLNIQNYSASPHPGIVAERPQTPSASEH E AVVPSTTEHRGTDIISLSQAATKI+QAQQ
Sbjct  1    MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSQAATKIQQAQQ  60

Query  61   TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSAFSAPTSALFSAS  120
            TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRS+FSAPTSALFSAS
Sbjct  61   TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSTFSAPTSALFSAS  120

Query  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLLP  180
            PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWL P
Sbjct  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP  180

Query  181  GKDGNTVKLDVTSLKNDLNSLVNKYNQINSNTVLFPAQSGSGVKVATEAEARQWLSELNL  240
            GKDGNT+KL+V SLK++++SL+NKY QIN NT+LFP+Q+GSG+  AT AEA QW+ ELNL
Sbjct  181  GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSGMTTATKAEAEQWIKELNL  240

Query  241  PNSCLKSYGSGYVVTVDLTPLQKMVQDIDGLGAPGKDSKLEMDNAKYQAWQSGFKAQEEN  300
            P+SCLK+ GSGYVV VD  PL KMV D++G+G+   +S LE+DNAKYQAWQSGFKAQEEN
Sbjct  241  PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGS---GSALELDNAKYQAWQSGFKAQEEN  297

Query  301  MKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  343
            +KTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG
Sbjct  298  LKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  340

14) STU288_14570 in NC_021151


> NC_003198_P5|24|G24|16761660|NP_457277.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|20030..21052|sipD|-|pathogenicity 
island 1 effector protein
Length=340

 Score =  480 bits (1810),  Expect = 5e-137, Method: Compositional matrix adjust.
 Identities = 299/343 (88%), Positives = 322/343 (94%), Gaps = 3/343 (0%)

Query  1    MLNIQNYSASPHPGIVAERPQTPSASEHVETAVVPSTTEHRGTDIISLSQAATKIHQAQQ  60
            MLNIQNYSASPHPGIVAERPQTPSASEH E AVVPSTTEHRGTDIISLSQAATKI+QAQQ
Sbjct  1    MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSQAATKIQQAQQ  60

Query  61   TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSAFSAPTSALFSAS  120
            TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRS+FSAPTSALFSAS
Sbjct  61   TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSTFSAPTSALFSAS  120

Query  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLLP  180
            PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWL P
Sbjct  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP  180

Query  181  GKDGNTVKLDVTSLKNDLNSLVNKYNQINSNTVLFPAQSGSGVKVATEAEARQWLSELNL  240
            GKDGNT+KL+V SLK++++SL+NKY QIN NT+LFP+Q+GSG+  AT AEA QW+ ELNL
Sbjct  181  GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSGMTTATKAEAEQWIKELNL  240

Query  241  PNSCLKSYGSGYVVTVDLTPLQKMVQDIDGLGAPGKDSKLEMDNAKYQAWQSGFKAQEEN  300
            P+SCLK+ GSGYVV VD  PL KMV D++G+G+   +S LE+DNAKYQAWQSGFKAQEEN
Sbjct  241  PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGS---GSALELDNAKYQAWQSGFKAQEEN  297

Query  301  MKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  343
            +KTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG
Sbjct  298  LKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  340

15) sipD in NC_016863


> NC_003198_P5|24|G24|16761660|NP_457277.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|20030..21052|sipD|-|pathogenicity 
island 1 effector protein
Length=340

 Score =  480 bits (1810),  Expect = 5e-137, Method: Compositional matrix adjust.
 Identities = 299/343 (88%), Positives = 322/343 (94%), Gaps = 3/343 (0%)

Query  1    MLNIQNYSASPHPGIVAERPQTPSASEHVETAVVPSTTEHRGTDIISLSQAATKIHQAQQ  60
            MLNIQNYSASPHPGIVAERPQTPSASEH E AVVPSTTEHRGTDIISLSQAATKI+QAQQ
Sbjct  1    MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSQAATKIQQAQQ  60

Query  61   TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSAFSAPTSALFSAS  120
            TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRS+FSAPTSALFSAS
Sbjct  61   TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSTFSAPTSALFSAS  120

Query  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLLP  180
            PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWL P
Sbjct  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP  180

Query  181  GKDGNTVKLDVTSLKNDLNSLVNKYNQINSNTVLFPAQSGSGVKVATEAEARQWLSELNL  240
            GKDGNT+KL+V SLK++++SL+NKY QIN NT+LFP+Q+GSG+  AT AEA QW+ ELNL
Sbjct  181  GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSGMTTATKAEAEQWIKELNL  240

Query  241  PNSCLKSYGSGYVVTVDLTPLQKMVQDIDGLGAPGKDSKLEMDNAKYQAWQSGFKAQEEN  300
            P+SCLK+ GSGYVV VD  PL KMV D++G+G+   +S LE+DNAKYQAWQSGFKAQEEN
Sbjct  241  PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGS---GSALELDNAKYQAWQSGFKAQEEN  297

Query  301  MKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  343
            +KTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG
Sbjct  298  LKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  340

16) CFSAN001921_02660 in NC_021814


> NC_003198_P5|24|G24|16761660|NP_457277.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|20030..21052|sipD|-|pathogenicity 
island 1 effector protein
Length=340

 Score =  480 bits (1810),  Expect = 5e-137, Method: Compositional matrix adjust.
 Identities = 299/343 (88%), Positives = 322/343 (94%), Gaps = 3/343 (0%)

Query  1    MLNIQNYSASPHPGIVAERPQTPSASEHVETAVVPSTTEHRGTDIISLSQAATKIHQAQQ  60
            MLNIQNYSASPHPGIVAERPQTPSASEH E AVVPSTTEHRGTDIISLSQAATKI+QAQQ
Sbjct  1    MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSQAATKIQQAQQ  60

Query  61   TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSAFSAPTSALFSAS  120
            TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRS+FSAPTSALFSAS
Sbjct  61   TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSTFSAPTSALFSAS  120

Query  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLLP  180
            PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWL P
Sbjct  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP  180

Query  181  GKDGNTVKLDVTSLKNDLNSLVNKYNQINSNTVLFPAQSGSGVKVATEAEARQWLSELNL  240
            GKDGNT+KL+V SLK++++SL+NKY QIN NT+LFP+Q+GSG+  AT AEA QW+ ELNL
Sbjct  181  GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSGMTTATKAEAEQWIKELNL  240

Query  241  PNSCLKSYGSGYVVTVDLTPLQKMVQDIDGLGAPGKDSKLEMDNAKYQAWQSGFKAQEEN  300
            P+SCLK+ GSGYVV VD  PL KMV D++G+G+   +S LE+DNAKYQAWQSGFKAQEEN
Sbjct  241  PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGS---GSALELDNAKYQAWQSGFKAQEEN  297

Query  301  MKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  343
            +KTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG
Sbjct  298  LKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  340

17) STBHUCCB_29290 in NC_016832


> NC_003198_P5|24|G24|16761660|NP_457277.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|20030..21052|sipD|-|pathogenicity 
island 1 effector protein
Length=340

 Score =  479 bits (1805),  Expect = 1e-136, Method: Compositional matrix adjust.
 Identities = 339/340 (99%), Positives = 339/340 (99%), Gaps = 0/340 (0%)

Query  1    MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSqaatkiqqaqq  60
            MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSQAATKIQQAQQ
Sbjct  1    MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSQAATKIQQAQQ  60

Query  61   tlqstPPISEENNDERTLALQQLTSSLNALAKSGVSLSAEQNENLRSTFSAPTSALFSAS  120
            TLQSTPPISEENNDERTLA QQLTSSLNALAKSGVSLSAEQNENLRSTFSAPTSALFSAS
Sbjct  61   TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSTFSAPTSALFSAS  120

Query  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP  180
            PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP
Sbjct  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP  180

Query  181  GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSGMTTATKAEAEQWIKELNL  240
            GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSGMTTATKAEAEQWIKELNL
Sbjct  181  GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSGMTTATKAEAEQWIKELNL  240

Query  241  PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGSGSALELDNAKYQAWQSGFKAQEENlkt  300
            PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGSGSALELDNAKYQAWQSGFKAQEENLKT
Sbjct  241  PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGSGSALELDNAKYQAWQSGFKAQEENLKT  300

Query  301  tlqtltqkYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  340
            TLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG
Sbjct  301  TLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  340

18) SeSA_A3036 in NC_011094


> NC_003198_P5|24|G24|16761660|NP_457277.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|20030..21052|sipD|-|pathogenicity 
island 1 effector protein
Length=340

 Score =  478 bits (1802),  Expect = 2e-136, Method: Compositional matrix adjust.
 Identities = 336/340 (99%), Positives = 338/340 (99%), Gaps = 0/340 (0%)

Query  1    MLNIQNYSASPHPGIVAERPQTPSASEHVETAVVPSTTEHRGTDIISLSqaatkiqqaqq  60
            MLNIQNYSASPHPGIVAERPQTPSASEH E AVVPSTTEHRGTDIISLSQAATKIQQAQQ
Sbjct  1    MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSQAATKIQQAQQ  60

Query  61   tlqstPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSAFSAPTSALFSAS  120
            TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRS+FSAPTSALFSAS
Sbjct  61   TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSTFSAPTSALFSAS  120

Query  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP  180
            PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP
Sbjct  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP  180

Query  181  GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSGVTTATKAEAEQWIKELNL  240
            GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSG+TTATKAEAEQWIKELNL
Sbjct  181  GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSGMTTATKAEAEQWIKELNL  240

Query  241  PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGSGSALELDNAKYQAWQSGFKAQEENlkt  300
            PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGSGSALELDNAKYQAWQSGFKAQEENLKT
Sbjct  241  PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGSGSALELDNAKYQAWQSGFKAQEENLKT  300

Query  301  tlqtltqkYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  340
            TLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG
Sbjct  301  TLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  340

19) CFSAN001992_19110 in NC_020307


> NC_003198_P5|24|G24|16761660|NP_457277.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|20030..21052|sipD|-|pathogenicity 
island 1 effector protein
Length=340

 Score =  469 bits (1766),  Expect = 1e-133, Method: Compositional matrix adjust.
 Identities = 334/340 (99%), Positives = 338/340 (99%), Gaps = 0/340 (0%)

Query  1    MLNIQNYSASPHPGIVAERPQTPSASEHVETAVVPSTTEHRGTDIISLsqaatkiqqtqq  60
            MLNIQNYSASPHPGIVAERPQTPSASEH E AVVPSTTEHRGTDIISLSQAATKIQQ+QQ
Sbjct  1    MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSQAATKIQQAQQ  60

Query  61   tlqstppiSEENNDERTLARQQLTSSLNALAKSGVSISAEQNENLRSAFSAPTSALFSAS  120
            TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVS+SAEQNENLRS+FSAPTSALFSAS
Sbjct  61   TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSTFSAPTSALFSAS  120

Query  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP  180
            PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP
Sbjct  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP  180

Query  181  GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSGVTTATKAEAEQWIKELNL  240
            GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSG+TTATKAEAEQWIKELNL
Sbjct  181  GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSGMTTATKAEAEQWIKELNL  240

Query  241  PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGSGSALELDNAKYQAWQSGFKAQEENlkt  300
            PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGSGSALELDNAKYQAWQSGFKAQEENLKT
Sbjct  241  PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGSGSALELDNAKYQAWQSGFKAQEENLKT  300

Query  301  tlqtltqkYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  340
            TLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG
Sbjct  301  TLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  340

20) SARI_00090 in NC_010067


> NC_003198_P5|24|G24|16761660|NP_457277.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|20030..21052|sipD|-|pathogenicity 
island 1 effector protein
Length=340

 Score =  458 bits (1726),  Expect = 2e-130, Method: Compositional matrix adjust.
 Identities = 303/340 (90%), Positives = 327/340 (97%), Gaps = 0/340 (0%)

Query  1    MLNIQNYSASPRPGLVAERPQTTSASEHVEITAAPATTEHRGADIITLSqaatkaqqaqq  60
            MLNIQNYSASP+PG+VAERPQT SASEH EI+  P+TTEHRG+DII+LSQAATK QQAQQ
Sbjct  1    MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSQAATKIQQAQQ  60

Query  61   tLRSTLPVSEENNDERTLARQQLTSSLHALTKSGVSLSAEQNEGLRSAFSAPAVALFSTA  120
            TL+ST P+SEENNDERTLARQQLTSSL+AL+KSGVSLSAEQNE LRS+FSAP+ ALFS++
Sbjct  61   TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSTFSAPTSALFSAS  120

Query  121  PMAQPRVTISDAEIWDMVSQNISAIGDNYLGVYENVVAVYTDFYQAFSDILSKMGTWLAP  180
            PMAQPR TISDAEIWDMVSQNISAIGD+YLGVYENVVAVYTDFYQAFSDILSKMG WL+P
Sbjct  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP  180

Query  181  GKDGNTVKLNVDALKSEIRSLVNKYNQVTKNTILFPSQTGSGVTTATKAEAEQWIKELNL  240
            GKDGNT+KLNVD+LKSEI SL+NKY Q+ KNTILFPSQTGSG+TTATKAEAEQWIKELNL
Sbjct  181  GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSGMTTATKAEAEQWIKELNL  240

Query  241  PGSCLKASGSGYVVLVDTGPLNKMVSDLNGIGSGSALELDNAKYQAWQAGFKAQEENlkt  300
            P+SCLKASGSGYVVLVDTGPL+KMVSDLNGIGSGSALELDNAKYQAWQ+GFKAQEENLKT
Sbjct  241  PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGSGSALELDNAKYQAWQSGFKAQEENLKT  300

Query  301  tlqtltqkYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  340
            TLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG
Sbjct  301  TLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  340

21) SEEB0189_05755 in NC_021844


> NC_003198_P5|24|G24|16761660|NP_457277.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|20030..21052|sipD|-|pathogenicity 
island 1 effector protein
Length=340

 Score =  454 bits (1711),  Expect = 4e-129, Method: Compositional matrix adjust.
 Identities = 301/343 (88%), Positives = 322/343 (94%), Gaps = 3/343 (0%)

Query  1    MLNIQNYSASPHPGIVAERPQTPSASEHVETAVVPSTTEHRGTDIISLSqaatkiqqaqq  60
            MLNIQNYSASPHPGIVAERPQTPSASEH E AVVPSTTEHRGTDIISLSQAATKIQQAQQ
Sbjct  1    MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSQAATKIQQAQQ  60

Query  61   tlqstPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSTFSAPTSALFSAS  120
            TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSTFSAPTSALFSAS
Sbjct  61   TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSTFSAPTSALFSAS  120

Query  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLLP  180
            PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWL P
Sbjct  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP  180

Query  181  GKDGNTVKLDVTSLKNDLNSLVNKYNQINSNTVLFPAQSGSGVKVATEAEARQWLSELNL  240
            GKDGNT+KL+V SLK++++SL+NKY QIN NT+LFP+Q+GSG+  AT AEA QW+ ELNL
Sbjct  181  GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSGMTTATKAEAEQWIKELNL  240

Query  241  PNSCLKSYGSGYVVTVDLTPLQKMVQDIDGLGAPGKDSKLEMDNAKYQAWQSGFKAQEEN  300
            P+SCLK+ GSGYVV VD  PL KMV D++G+G+   +S LE+DNAKYQAWQSGFKAQEEN
Sbjct  241  PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGS---GSALELDNAKYQAWQSGFKAQEEN  297

Query  301  MKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  343
            +KTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG
Sbjct  298  LKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  340

22) SBOV29091 in NC_022241


> NC_003198_P5|24|G24|16761660|NP_457277.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|20030..21052|sipD|-|pathogenicity 
island 1 effector protein
Length=340

 Score =  454 bits (1709),  Expect = 5e-129, Method: Compositional matrix adjust.
 Identities = 300/343 (88%), Positives = 322/343 (94%), Gaps = 3/343 (0%)

Query  1    MLNIQNYSASPHPGIVAERPQTPSASEHVETAVVPSTTEHRGTDIISLSqaatkiqqaqq  60
            MLNIQNYSASPHPGIVAERPQTPSASEH E AVVPSTTEHRGTDIISLSQAATKIQQAQQ
Sbjct  1    MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSQAATKIQQAQQ  60

Query  61   tlqstPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSAFSAPTSALFSAS  120
            TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRS+FSAPTSALFSAS
Sbjct  61   TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSTFSAPTSALFSAS  120

Query  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLLP  180
            PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWL P
Sbjct  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP  180

Query  181  GKDGNTVKLDVTSLKNDLNSLVNKYNQINSNTVLFPAQSGSGVKVATEAEARQWLSELNL  240
            GKDGNT+KL+V SLK++++SL+NKY QIN NT+LFP+Q+GSG+  AT AEA QW+ ELNL
Sbjct  181  GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSGMTTATKAEAEQWIKELNL  240

Query  241  PNSCLKSYGSGYVVTVDLTPLQKMVQDIDGLGAPGKDSKLEMDNAKYQAWQSGFKAQEEN  300
            P+SCLK+ GSGYVV VD  PL KMV D++G+G+   +S LE+DNAKYQAWQSGFKAQEEN
Sbjct  241  PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGS---GSALELDNAKYQAWQSGFKAQEEN  297

Query  301  MKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  343
            +KTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG
Sbjct  298  LKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  340

23) sipD in NC_011294


> NC_003198_P5|24|G24|16761660|NP_457277.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|20030..21052|sipD|-|pathogenicity 
island 1 effector protein
Length=340

 Score =  454 bits (1709),  Expect = 5e-129, Method: Compositional matrix adjust.
 Identities = 300/343 (88%), Positives = 322/343 (94%), Gaps = 3/343 (0%)

Query  1    MLNIQNYSASPHPGIVAERPQTPSASEHVETAVVPSTTEHRGTDIISLSqaatkiqqaqq  60
            MLNIQNYSASPHPGIVAERPQTPSASEH E AVVPSTTEHRGTDIISLSQAATKIQQAQQ
Sbjct  1    MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSQAATKIQQAQQ  60

Query  61   tlqstPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSAFSAPTSALFSAS  120
            TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRS+FSAPTSALFSAS
Sbjct  61   TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSTFSAPTSALFSAS  120

Query  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLLP  180
            PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWL P
Sbjct  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP  180

Query  181  GKDGNTVKLDVTSLKNDLNSLVNKYNQINSNTVLFPAQSGSGVKVATEAEARQWLSELNL  240
            GKDGNT+KL+V SLK++++SL+NKY QIN NT+LFP+Q+GSG+  AT AEA QW+ ELNL
Sbjct  181  GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSGMTTATKAEAEQWIKELNL  240

Query  241  PNSCLKSYGSGYVVTVDLTPLQKMVQDIDGLGAPGKDSKLEMDNAKYQAWQSGFKAQEEN  300
            P+SCLK+ GSGYVV VD  PL KMV D++G+G+   +S LE+DNAKYQAWQSGFKAQEEN
Sbjct  241  PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGS---GSALELDNAKYQAWQSGFKAQEEN  297

Query  301  MKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  343
            +KTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG
Sbjct  298  LKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  340

24) sipD in NC_011274


> NC_003198_P5|24|G24|16761660|NP_457277.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|20030..21052|sipD|-|pathogenicity 
island 1 effector protein
Length=340

 Score =  454 bits (1709),  Expect = 5e-129, Method: Compositional matrix adjust.
 Identities = 300/343 (88%), Positives = 322/343 (94%), Gaps = 3/343 (0%)

Query  1    MLNIQNYSASPHPGIVAERPQTPSASEHVETAVVPSTTEHRGTDIISLSqaatkiqqaqq  60
            MLNIQNYSASPHPGIVAERPQTPSASEH E AVVPSTTEHRGTDIISLSQAATKIQQAQQ
Sbjct  1    MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSQAATKIQQAQQ  60

Query  61   tlqstPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSAFSAPTSALFSAS  120
            TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRS+FSAPTSALFSAS
Sbjct  61   TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSTFSAPTSALFSAS  120

Query  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLLP  180
            PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWL P
Sbjct  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP  180

Query  181  GKDGNTVKLDVTSLKNDLNSLVNKYNQINSNTVLFPAQSGSGVKVATEAEARQWLSELNL  240
            GKDGNT+KL+V SLK++++SL+NKY QIN NT+LFP+Q+GSG+  AT AEA QW+ ELNL
Sbjct  181  GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSGMTTATKAEAEQWIKELNL  240

Query  241  PNSCLKSYGSGYVVTVDLTPLQKMVQDIDGLGAPGKDSKLEMDNAKYQAWQSGFKAQEEN  300
            P+SCLK+ GSGYVV VD  PL KMV D++G+G+   +S LE+DNAKYQAWQSGFKAQEEN
Sbjct  241  PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGS---GSALELDNAKYQAWQSGFKAQEEN  297

Query  301  MKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  343
            +KTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG
Sbjct  298  LKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  340

25) sipD in NC_022221


> NC_003198_P5|24|G24|16761660|NP_457277.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|20030..21052|sipD|-|pathogenicity 
island 1 effector protein
Length=340

 Score =  454 bits (1709),  Expect = 5e-129, Method: Compositional matrix adjust.
 Identities = 300/343 (88%), Positives = 322/343 (94%), Gaps = 3/343 (0%)

Query  1    MLNIQNYSASPHPGIVAERPQTPSASEHVETAVVPSTTEHRGTDIISLSqaatkiqqaqq  60
            MLNIQNYSASPHPGIVAERPQTPSASEH E AVVPSTTEHRGTDIISLSQAATKIQQAQQ
Sbjct  1    MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSQAATKIQQAQQ  60

Query  61   tlqstPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSAFSAPTSALFSAS  120
            TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRS+FSAPTSALFSAS
Sbjct  61   TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSTFSAPTSALFSAS  120

Query  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLLP  180
            PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWL P
Sbjct  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP  180

Query  181  GKDGNTVKLDVTSLKNDLNSLVNKYNQINSNTVLFPAQSGSGVKVATEAEARQWLSELNL  240
            GKDGNT+KL+V SLK++++SL+NKY QIN NT+LFP+Q+GSG+  AT AEA QW+ ELNL
Sbjct  181  GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSGMTTATKAEAEQWIKELNL  240

Query  241  PNSCLKSYGSGYVVTVDLTPLQKMVQDIDGLGAPGKDSKLEMDNAKYQAWQSGFKAQEEN  300
            P+SCLK+ GSGYVV VD  PL KMV D++G+G+   +S LE+DNAKYQAWQSGFKAQEEN
Sbjct  241  PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGS---GSALELDNAKYQAWQSGFKAQEEN  297

Query  301  MKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  343
            +KTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG
Sbjct  298  LKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  340

26) sipD in NC_016831


> NC_003198_P5|24|G24|16761660|NP_457277.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|20030..21052|sipD|-|pathogenicity 
island 1 effector protein
Length=340

 Score =  454 bits (1709),  Expect = 5e-129, Method: Compositional matrix adjust.
 Identities = 300/343 (88%), Positives = 322/343 (94%), Gaps = 3/343 (0%)

Query  1    MLNIQNYSASPHPGIVAERPQTPSASEHVETAVVPSTTEHRGTDIISLSqaatkiqqaqq  60
            MLNIQNYSASPHPGIVAERPQTPSASEH E AVVPSTTEHRGTDIISLSQAATKIQQAQQ
Sbjct  1    MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSQAATKIQQAQQ  60

Query  61   tlqstPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSAFSAPTSALFSAS  120
            TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRS+FSAPTSALFSAS
Sbjct  61   TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSTFSAPTSALFSAS  120

Query  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLLP  180
            PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWL P
Sbjct  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP  180

Query  181  GKDGNTVKLDVTSLKNDLNSLVNKYNQINSNTVLFPAQSGSGVKVATEAEARQWLSELNL  240
            GKDGNT+KL+V SLK++++SL+NKY QIN NT+LFP+Q+GSG+  AT AEA QW+ ELNL
Sbjct  181  GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSGMTTATKAEAEQWIKELNL  240

Query  241  PNSCLKSYGSGYVVTVDLTPLQKMVQDIDGLGAPGKDSKLEMDNAKYQAWQSGFKAQEEN  300
            P+SCLK+ GSGYVV VD  PL KMV D++G+G+   +S LE+DNAKYQAWQSGFKAQEEN
Sbjct  241  PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGS---GSALELDNAKYQAWQSGFKAQEEN  297

Query  301  MKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  343
            +KTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG
Sbjct  298  LKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  340

27) SEEH1578_23225 in NC_021810


> NC_003198_P5|24|G24|16761660|NP_457277.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|20030..21052|sipD|-|pathogenicity 
island 1 effector protein
Length=340

 Score =  454 bits (1709),  Expect = 5e-129, Method: Compositional matrix adjust.
 Identities = 300/343 (88%), Positives = 322/343 (94%), Gaps = 3/343 (0%)

Query  1    MLNIQNYSASPHPGIVAERPQTPSASEHVETAVVPSTTEHRGTDIISLSqaatkiqqaqq  60
            MLNIQNYSASPHPGIVAERPQTPSASEH E AVVPSTTEHRGTDIISLSQAATKIQQAQQ
Sbjct  1    MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSQAATKIQQAQQ  60

Query  61   tlqstPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSAFSAPTSALFSAS  120
            TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRS+FSAPTSALFSAS
Sbjct  61   TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSTFSAPTSALFSAS  120

Query  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLLP  180
            PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWL P
Sbjct  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP  180

Query  181  GKDGNTVKLDVTSLKNDLNSLVNKYNQINSNTVLFPAQSGSGVKVATEAEARQWLSELNL  240
            GKDGNT+KL+V SLK++++SL+NKY QIN NT+LFP+Q+GSG+  AT AEA QW+ ELNL
Sbjct  181  GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSGMTTATKAEAEQWIKELNL  240

Query  241  PNSCLKSYGSGYVVTVDLTPLQKMVQDIDGLGAPGKDSKLEMDNAKYQAWQSGFKAQEEN  300
            P+SCLK+ GSGYVV VD  PL KMV D++G+G+   +S LE+DNAKYQAWQSGFKAQEEN
Sbjct  241  PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGS---GSALELDNAKYQAWQSGFKAQEEN  297

Query  301  MKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  343
            +KTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG
Sbjct  298  LKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  340

28) SU5_03364 in NC_017623


> NC_003198_P5|24|G24|16761660|NP_457277.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|20030..21052|sipD|-|pathogenicity 
island 1 effector protein
Length=340

 Score =  454 bits (1709),  Expect = 5e-129, Method: Compositional matrix adjust.
 Identities = 300/343 (88%), Positives = 322/343 (94%), Gaps = 3/343 (0%)

Query  1    MLNIQNYSASPHPGIVAERPQTPSASEHVETAVVPSTTEHRGTDIISLSqaatkiqqaqq  60
            MLNIQNYSASPHPGIVAERPQTPSASEH E AVVPSTTEHRGTDIISLSQAATKIQQAQQ
Sbjct  1    MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSQAATKIQQAQQ  60

Query  61   tlqstPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSAFSAPTSALFSAS  120
            TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRS+FSAPTSALFSAS
Sbjct  61   TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSTFSAPTSALFSAS  120

Query  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLLP  180
            PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWL P
Sbjct  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP  180

Query  181  GKDGNTVKLDVTSLKNDLNSLVNKYNQINSNTVLFPAQSGSGVKVATEAEARQWLSELNL  240
            GKDGNT+KL+V SLK++++SL+NKY QIN NT+LFP+Q+GSG+  AT AEA QW+ ELNL
Sbjct  181  GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSGMTTATKAEAEQWIKELNL  240

Query  241  PNSCLKSYGSGYVVTVDLTPLQKMVQDIDGLGAPGKDSKLEMDNAKYQAWQSGFKAQEEN  300
            P+SCLK+ GSGYVV VD  PL KMV D++G+G+   +S LE+DNAKYQAWQSGFKAQEEN
Sbjct  241  PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGS---GSALELDNAKYQAWQSGFKAQEEN  297

Query  301  MKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  343
            +KTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG
Sbjct  298  LKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  340

29) CFSAN002069_17855 in NC_021812


> NC_003198_P5|24|G24|16761660|NP_457277.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|20030..21052|sipD|-|pathogenicity 
island 1 effector protein
Length=340

 Score =  454 bits (1709),  Expect = 5e-129, Method: Compositional matrix adjust.
 Identities = 300/343 (88%), Positives = 322/343 (94%), Gaps = 3/343 (0%)

Query  1    MLNIQNYSASPHPGIVAERPQTPSASEHVETAVVPSTTEHRGTDIISLSqaatkiqqaqq  60
            MLNIQNYSASPHPGIVAERPQTPSASEH E AVVPSTTEHRGTDIISLSQAATKIQQAQQ
Sbjct  1    MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSQAATKIQQAQQ  60

Query  61   tlqstPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSAFSAPTSALFSAS  120
            TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRS+FSAPTSALFSAS
Sbjct  61   TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSTFSAPTSALFSAS  120

Query  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLLP  180
            PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWL P
Sbjct  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP  180

Query  181  GKDGNTVKLDVTSLKNDLNSLVNKYNQINSNTVLFPAQSGSGVKVATEAEARQWLSELNL  240
            GKDGNT+KL+V SLK++++SL+NKY QIN NT+LFP+Q+GSG+  AT AEA QW+ ELNL
Sbjct  181  GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSGMTTATKAEAEQWIKELNL  240

Query  241  PNSCLKSYGSGYVVTVDLTPLQKMVQDIDGLGAPGKDSKLEMDNAKYQAWQSGFKAQEEN  300
            P+SCLK+ GSGYVV VD  PL KMV D++G+G+   +S LE+DNAKYQAWQSGFKAQEEN
Sbjct  241  PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGS---GSALELDNAKYQAWQSGFKAQEEN  297

Query  301  MKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  343
            +KTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG
Sbjct  298  LKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  340

30) SeHA_C3073 in NC_011083


> NC_003198_P5|24|G24|16761660|NP_457277.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|20030..21052|sipD|-|pathogenicity 
island 1 effector protein
Length=340

 Score =  454 bits (1709),  Expect = 5e-129, Method: Compositional matrix adjust.
 Identities = 300/343 (88%), Positives = 322/343 (94%), Gaps = 3/343 (0%)

Query  1    MLNIQNYSASPHPGIVAERPQTPSASEHVETAVVPSTTEHRGTDIISLSqaatkiqqaqq  60
            MLNIQNYSASPHPGIVAERPQTPSASEH E AVVPSTTEHRGTDIISLSQAATKIQQAQQ
Sbjct  1    MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSQAATKIQQAQQ  60

Query  61   tlqstPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSAFSAPTSALFSAS  120
            TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRS+FSAPTSALFSAS
Sbjct  61   TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSTFSAPTSALFSAS  120

Query  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLLP  180
            PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWL P
Sbjct  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP  180

Query  181  GKDGNTVKLDVTSLKNDLNSLVNKYNQINSNTVLFPAQSGSGVKVATEAEARQWLSELNL  240
            GKDGNT+KL+V SLK++++SL+NKY QIN NT+LFP+Q+GSG+  AT AEA QW+ ELNL
Sbjct  181  GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSGMTTATKAEAEQWIKELNL  240

Query  241  PNSCLKSYGSGYVVTVDLTPLQKMVQDIDGLGAPGKDSKLEMDNAKYQAWQSGFKAQEEN  300
            P+SCLK+ GSGYVV VD  PL KMV D++G+G+   +S LE+DNAKYQAWQSGFKAQEEN
Sbjct  241  PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGS---GSALELDNAKYQAWQSGFKAQEEN  297

Query  301  MKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  343
            +KTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG
Sbjct  298  LKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  340

31) SNSL254_A3088 in NC_011080


> NC_003198_P5|24|G24|16761660|NP_457277.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|20030..21052|sipD|-|pathogenicity 
island 1 effector protein
Length=340

 Score =  454 bits (1709),  Expect = 5e-129, Method: Compositional matrix adjust.
 Identities = 300/343 (88%), Positives = 322/343 (94%), Gaps = 3/343 (0%)

Query  1    MLNIQNYSASPHPGIVAERPQTPSASEHVETAVVPSTTEHRGTDIISLSqaatkiqqaqq  60
            MLNIQNYSASPHPGIVAERPQTPSASEH E AVVPSTTEHRGTDIISLSQAATKIQQAQQ
Sbjct  1    MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSQAATKIQQAQQ  60

Query  61   tlqstPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSAFSAPTSALFSAS  120
            TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRS+FSAPTSALFSAS
Sbjct  61   TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSTFSAPTSALFSAS  120

Query  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLLP  180
            PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWL P
Sbjct  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP  180

Query  181  GKDGNTVKLDVTSLKNDLNSLVNKYNQINSNTVLFPAQSGSGVKVATEAEARQWLSELNL  240
            GKDGNT+KL+V SLK++++SL+NKY QIN NT+LFP+Q+GSG+  AT AEA QW+ ELNL
Sbjct  181  GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSGMTTATKAEAEQWIKELNL  240

Query  241  PNSCLKSYGSGYVVTVDLTPLQKMVQDIDGLGAPGKDSKLEMDNAKYQAWQSGFKAQEEN  300
            P+SCLK+ GSGYVV VD  PL KMV D++G+G+   +S LE+DNAKYQAWQSGFKAQEEN
Sbjct  241  PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGS---GSALELDNAKYQAWQSGFKAQEEN  297

Query  301  MKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  343
            +KTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG
Sbjct  298  LKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  340

32) SN31241_39750 in NC_021902


> NC_003198_P5|24|G24|16761660|NP_457277.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|20030..21052|sipD|-|pathogenicity 
island 1 effector protein
Length=340

 Score =  454 bits (1709),  Expect = 5e-129, Method: Compositional matrix adjust.
 Identities = 300/343 (88%), Positives = 322/343 (94%), Gaps = 3/343 (0%)

Query  1    MLNIQNYSASPHPGIVAERPQTPSASEHVETAVVPSTTEHRGTDIISLSqaatkiqqaqq  60
            MLNIQNYSASPHPGIVAERPQTPSASEH E AVVPSTTEHRGTDIISLSQAATKIQQAQQ
Sbjct  1    MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSQAATKIQQAQQ  60

Query  61   tlqstPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSAFSAPTSALFSAS  120
            TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRS+FSAPTSALFSAS
Sbjct  61   TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSTFSAPTSALFSAS  120

Query  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLLP  180
            PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWL P
Sbjct  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP  180

Query  181  GKDGNTVKLDVTSLKNDLNSLVNKYNQINSNTVLFPAQSGSGVKVATEAEARQWLSELNL  240
            GKDGNT+KL+V SLK++++SL+NKY QIN NT+LFP+Q+GSG+  AT AEA QW+ ELNL
Sbjct  181  GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSGMTTATKAEAEQWIKELNL  240

Query  241  PNSCLKSYGSGYVVTVDLTPLQKMVQDIDGLGAPGKDSKLEMDNAKYQAWQSGFKAQEEN  300
            P+SCLK+ GSGYVV VD  PL KMV D++G+G+   +S LE+DNAKYQAWQSGFKAQEEN
Sbjct  241  PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGS---GSALELDNAKYQAWQSGFKAQEEN  297

Query  301  MKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  343
            +KTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG
Sbjct  298  LKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  340

33) sipD in NC_012125


> NC_003198_P5|24|G24|16761660|NP_457277.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|20030..21052|sipD|-|pathogenicity 
island 1 effector protein
Length=340

 Score =  454 bits (1709),  Expect = 5e-129, Method: Compositional matrix adjust.
 Identities = 300/343 (88%), Positives = 322/343 (94%), Gaps = 3/343 (0%)

Query  1    MLNIQNYSASPHPGIVAERPQTPSASEHVETAVVPSTTEHRGTDIISLSqaatkiqqaqq  60
            MLNIQNYSASPHPGIVAERPQTPSASEH E AVVPSTTEHRGTDIISLSQAATKIQQAQQ
Sbjct  1    MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSQAATKIQQAQQ  60

Query  61   tlqstPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSAFSAPTSALFSAS  120
            TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRS+FSAPTSALFSAS
Sbjct  61   TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSTFSAPTSALFSAS  120

Query  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLLP  180
            PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWL P
Sbjct  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP  180

Query  181  GKDGNTVKLDVTSLKNDLNSLVNKYNQINSNTVLFPAQSGSGVKVATEAEARQWLSELNL  240
            GKDGNT+KL+V SLK++++SL+NKY QIN NT+LFP+Q+GSG+  AT AEA QW+ ELNL
Sbjct  181  GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSGMTTATKAEAEQWIKELNL  240

Query  241  PNSCLKSYGSGYVVTVDLTPLQKMVQDIDGLGAPGKDSKLEMDNAKYQAWQSGFKAQEEN  300
            P+SCLK+ GSGYVV VD  PL KMV D++G+G+   +S LE+DNAKYQAWQSGFKAQEEN
Sbjct  241  PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGS---GSALELDNAKYQAWQSGFKAQEEN  297

Query  301  MKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  343
            +KTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG
Sbjct  298  LKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  340

34) I137_13725 in NC_021984


> NC_003198_P5|24|G24|16761660|NP_457277.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|20030..21052|sipD|-|pathogenicity 
island 1 effector protein
Length=340

 Score =  454 bits (1709),  Expect = 5e-129, Method: Compositional matrix adjust.
 Identities = 300/343 (88%), Positives = 322/343 (94%), Gaps = 3/343 (0%)

Query  1    MLNIQNYSASPHPGIVAERPQTPSASEHVETAVVPSTTEHRGTDIISLSqaatkiqqaqq  60
            MLNIQNYSASPHPGIVAERPQTPSASEH E AVVPSTTEHRGTDIISLSQAATKIQQAQQ
Sbjct  1    MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSQAATKIQQAQQ  60

Query  61   tlqstPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSAFSAPTSALFSAS  120
            TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRS+FSAPTSALFSAS
Sbjct  61   TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSTFSAPTSALFSAS  120

Query  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLLP  180
            PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWL P
Sbjct  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP  180

Query  181  GKDGNTVKLDVTSLKNDLNSLVNKYNQINSNTVLFPAQSGSGVKVATEAEARQWLSELNL  240
            GKDGNT+KL+V SLK++++SL+NKY QIN NT+LFP+Q+GSG+  AT AEA QW+ ELNL
Sbjct  181  GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSGMTTATKAEAEQWIKELNL  240

Query  241  PNSCLKSYGSGYVVTVDLTPLQKMVQDIDGLGAPGKDSKLEMDNAKYQAWQSGFKAQEEN  300
            P+SCLK+ GSGYVV VD  PL KMV D++G+G+   +S LE+DNAKYQAWQSGFKAQEEN
Sbjct  241  PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGS---GSALELDNAKYQAWQSGFKAQEEN  297

Query  301  MKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  343
            +KTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG
Sbjct  298  LKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  340

35) sipD in NC_006905


> NC_003198_P5|24|G24|16761660|NP_457277.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|20030..21052|sipD|-|pathogenicity 
island 1 effector protein
Length=340

 Score =  451 bits (1700),  Expect = 2e-128, Method: Compositional matrix adjust.
 Identities = 299/343 (88%), Positives = 322/343 (94%), Gaps = 3/343 (0%)

Query  1    MLNIQNYSASPHPGIVAEWPQTPSASEHVETAVVPSTTEHRGTDIISLSqaatkiqqaqq  60
            MLNIQNYSASPHPGIVAE+PQTPSASEH E AVVPSTTEHRGTDIISLSQAATKIQQAQQ
Sbjct  1    MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSQAATKIQQAQQ  60

Query  61   tlqstPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSAFSAPTSALFSAS  120
            TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRS+FSAPTSALFSAS
Sbjct  61   TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSTFSAPTSALFSAS  120

Query  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLLP  180
            PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWL P
Sbjct  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP  180

Query  181  GKDGNTVKLDVTSLKNDLNSLVNKYNQINSNTVLFPAQSGSGVKVATEAEARQWLSELNL  240
            GKDGNT+KL+V SLK++++SL+NKY QIN NT+LFP+Q+GSG+  AT AEA QW+ ELNL
Sbjct  181  GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSGMTTATKAEAEQWIKELNL  240

Query  241  PNSCLKSYGSGYVVTVDLTPLQKMVQDIDGLGAPGKDSKLEMDNAKYQAWQSGFKAQEEN  300
            P+SCLK+ GSGYVV VD  PL KMV D++G+G+   +S LE+DNAKYQAWQSGFKAQEEN
Sbjct  241  PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGS---GSALELDNAKYQAWQSGFKAQEEN  297

Query  301  MKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  343
            +KTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG
Sbjct  298  LKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  340

36) SeAg_B3005 in NC_011149


> NC_003198_P5|24|G24|16761660|NP_457277.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|20030..21052|sipD|-|pathogenicity 
island 1 effector protein
Length=340

 Score =  435 bits (1639),  Expect = 2e-123, Method: Compositional matrix adjust.
 Identities = 303/343 (89%), Positives = 324/343 (95%), Gaps = 3/343 (0%)

Query  1    MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSqaatkiqqaqq  60
            MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSQAATKIQQAQQ
Sbjct  1    MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSQAATKIQQAQQ  60

Query  61   tlqstPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSAFSAPTSALFSAS  120
            TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRS+FSAPTSALFSAS
Sbjct  61   TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSTFSAPTSALFSAS  120

Query  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLLP  180
            PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWL P
Sbjct  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP  180

Query  181  GKDGNTVKLDVTSLKNDLNSLVNKYNQINSNTVLFPAQSGSGVKVATEAEARQWLSELNL  240
            GKDGNT+KL+V SLK++++SL+NKY QIN NT+LFP+Q+GSG+  AT AEA QW+ ELNL
Sbjct  181  GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSGMTTATKAEAEQWIKELNL  240

Query  241  PNSCLKSYGSGYVVTVDLTPLQKMVQDIDGLGAPGKDSKLEMDNAKYQAWQSGFKAQEEN  300
            P+SCLK+ GSGYVV VD  PL KMV D++G+G+   +S LE+DNAKYQAWQSGFKAQEEN
Sbjct  241  PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGS---GSALELDNAKYQAWQSGFKAQEEN  297

Query  301  lkttlqtltqkYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  343
            LKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG
Sbjct  298  LKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  340

37) A464_2907 in NC_021870


> NC_003198_P5|24|G24|16761660|NP_457277.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|20030..21052|sipD|-|pathogenicity 
island 1 effector protein
Length=340

 Score =  434 bits (1634),  Expect = 4e-123, Method: Compositional matrix adjust.
 Identities = 315/340 (93%), Positives = 333/340 (98%), Gaps = 0/340 (0%)

Query  1    MLNIQNYSASPHPGLVAERPQTPSASEHVEIAAVPSTTEHRGTDIIslsqaatkaqqaqq  60
            MLNIQNYSASPHPG+VAERPQTPSASEH EIA VPSTTEHRGTDIISLSQAATK QQAQQ
Sbjct  1    MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSQAATKIQQAQQ  60

Query  61   tlqstPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRsafsaptsasfsas  120
            TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRS+FSAPTSA FSAS
Sbjct  61   TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSTFSAPTSALFSAS  120

Query  121  pMAQPKTTISDAEIWEMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP  180
            PMAQP+TTISDAEIW+MVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP
Sbjct  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP  180

Query  181  GKDGNTVKLNVNSLKSEISNLINKYNQVNQNTILFPTQNGSGVTTASRAEAEQWIKELNL  240
            GKDGNT+KLNV+SLKSEIS+LINKY Q+N+NTILFP+Q GSG+TTA++AEAEQWIKELNL
Sbjct  181  GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSGMTTATKAEAEQWIKELNL  240

Query  241  PDSCLKSSGGGYVVLVDLGPLNKMVSDLNGIGSGTALEMDNAKYQAWQSGFKAQEENlkt  300
            PDSCLK+SG+GYVVLVD GPL+KMVSDLNGIGSG+ALE+DNAKYQAWQSGFKAQEENLKT
Sbjct  241  PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGSGSALELDNAKYQAWQSGFKAQEENLKT  300

Query  301  tlqtltqkYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  340
            TLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG
Sbjct  301  TLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  340

38) sipD in NC_015761


> NC_003198_P5|24|G24|16761660|NP_457277.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|20030..21052|sipD|-|pathogenicity 
island 1 effector protein
Length=340

 Score =  431 bits (1622),  Expect = 3e-122, Method: Compositional matrix adjust.
 Identities = 313/340 (93%), Positives = 332/340 (98%), Gaps = 0/340 (0%)

Query  1    MLNIQNYSASPHPGLVAERSQTPSASEHVEIAAVPSTTEHRGTDIIslsqaatkaqqaqq  60
            MLNIQNYSASPHPG+VAER+QTPSASEH EIA VPSTTEHRGTDIISLSQAATK QQAQQ
Sbjct  1    MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSQAATKIQQAQQ  60

Query  61   tlqstPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRsafsaptsasfsas  120
            TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRS+FSAPTSA FSAS
Sbjct  61   TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSTFSAPTSALFSAS  120

Query  121  pMAQPKTTISDAEIWEMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP  180
            PMAQP+TTISDAEIW+MVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP
Sbjct  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP  180

Query  181  GKDGNTVKLNVNSLKSEISSLVNKYNQVNQNTILFPTQNGSGVTTASRAEAEQWIKELNL  240
            GKDGNT+KLNV+SLKSEISSL+NKY Q+N+NTILFP+Q GSG+TTA++AEAEQWIKELNL
Sbjct  181  GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSGMTTATKAEAEQWIKELNL  240

Query  241  PDSCLKSSGGGYVVLVDLGPLNKMVSDLGGIGSGTALEMDNAKYQAWQSGFKAQEENlkt  300
            PDSCLK+SG+GYVVLVD GPL+KMVSDL GIGSG+ALE+DNAKYQAWQSGFKAQEENLKT
Sbjct  241  PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGSGSALELDNAKYQAWQSGFKAQEENLKT  300

Query  301  tlqtltqkYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  340
            TLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG
Sbjct  301  TLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  340

39) CFSAN002050_20715 in NC_021818


> NC_003198_P5|24|G24|16761660|NP_457277.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|20030..21052|sipD|-|pathogenicity 
island 1 effector protein
Length=340

 Score =  429 bits (1614),  Expect = 2e-121, Method: Compositional matrix adjust.
 Identities = 299/343 (88%), Positives = 322/343 (94%), Gaps = 3/343 (0%)

Query  1    MLNIQNYSASPHPGIVAERPQTPSASEHVEVAVVPSTTEHRGTDIISLSqaatkiqqaqq  60
            MLNIQNYSASPHPGIVAERPQTPSASEH E+AVVPSTTEHRGTDIISLSQAATKIQQAQQ
Sbjct  1    MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSQAATKIQQAQQ  60

Query  61   tlqstLPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSAFSAPTSALFSAS  120
            TLQST PISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRS+FSAPTSALFSAS
Sbjct  61   TLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSTFSAPTSALFSAS  120

Query  121  PMAQSRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLLP  180
            PMAQ+RTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWL P
Sbjct  121  PMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLSP  180

Query  181  GKDGNTVKLDVTSLKNDLNSLVNKYNQINSNTVLFPAQSGSGVKVATEAEARQWLSELNL  240
            GKDGNT+KL+V SLK++++SL+NKY QIN NT+LFP+Q+GSG+  AT AEA QW+ ELNL
Sbjct  181  GKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSGMTTATKAEAEQWIKELNL  240

Query  241  PNSCLKSYGSGYVVTVDLTPLQKMVQDIDGLGAPGKDSKLEMDNAKYQAWQSGFKAQEEN  300
            P+SCLK+ GSGYVV VD  PL KMV D++G+G+   +S LE+DNAKYQAWQSGFKAQEEN
Sbjct  241  PDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGS---GSALELDNAKYQAWQSGFKAQEEN  297

Query  301  lkttlqtltqkYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  343
            LKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG
Sbjct  298  LKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG  340

40) SPAB_03585 in NC_010102


> NC_003198_P5|24|G24|16761660|NP_457277.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|20030..21052|sipD|-|pathogenicity 
island 1 effector protein
Length=340

 Score =  404 bits (1521),  Expect = 3e-114, Method: Compositional matrix adjust.
 Identities = 269/311 (87%), Positives = 292/311 (94%), Gaps = 3/311 (0%)

Query  1    MVPSTTEHRGTDIISLSqaatkiqqaqqtlqstPPISEENNDERTLARQQLTSSLNALAK  60
            +VPSTTEHRGTDIISLSQAATKIQQAQQTLQSTPPISEENNDERTLARQQLTSSLNALAK
Sbjct  33   VVPSTTEHRGTDIISLSQAATKIQQAQQTLQSTPPISEENNDERTLARQQLTSSLNALAK  92

Query  61   SGVSLSAEQNENLRSAFSAPTSALFSASPMAQPRTTISDAEIWDMVSQNISAIGDSYLGV  120
            SGVSLSAEQNENLRS+FSAPTSALFSASPMAQPRTTISDAEIWDMVSQNISAIGDSYLGV
Sbjct  93   SGVSLSAEQNENLRSTFSAPTSALFSASPMAQPRTTISDAEIWDMVSQNISAIGDSYLGV  152

Query  121  YENVVAVYTDFYQAFSDILSKMGGWLLPGKDGNTVKLDVTSLKNDLNSLVNKYNQINSNT  180
            YENVVAVYTDFYQAFSDILSKMGGWL PGKDGNT+KL+V SLK++++SL+NKY QIN NT
Sbjct  153  YENVVAVYTDFYQAFSDILSKMGGWLSPGKDGNTIKLNVDSLKSEISSLINKYTQINKNT  212

Query  181  VLFPAQSGSGVKVATEAEARQWLSELNLPNSCLKSYGSGYVVTVDLTPLQKMVQDIDGLG  240
            +LFP+Q+GSG+  AT AEA QW+ ELNLP+SCLK+ GSGYVV VD  PL KMV D++G+G
Sbjct  213  ILFPSQTGSGMTTATKAEAEQWIKELNLPDSCLKASGSGYVVLVDTGPLSKMVSDLNGIG  272

Query  241  APGKDSKLEMDNAKYQAWQSGFKAQEENMKTTLQTLTQKYSNANSLYDNLVKVLSSTISS  300
            +   +S LE+DNAKYQAWQSGFKAQEEN+KTTLQTLTQKYSNANSLYDNLVKVLSSTISS
Sbjct  273  S---GSALELDNAKYQAWQSGFKAQEENLKTTLQTLTQKYSNANSLYDNLVKVLSSTISS  329

Query  301  SLETAKSFLQG  311
            SLETAKSFLQG
Sbjct  330  SLETAKSFLQG  340

41) sipD in NC_005085


> NC_003198_P5|24|G24|16761660|NP_457277.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|20030..21052|sipD|-|pathogenicity 
island 1 effector protein
Length=340

 Score =  234 bits (873),  Expect = 7e-63, Method: Compositional matrix adjust.
 Identities = 149/292 (52%), Positives = 221/292 (76%), Gaps = 22/292 (7%)

Query  107  DEARNAQTVSARLFEGNLKGVAQSGHAMSAEQKQALQSGLDDVFADAPPQARSAGAPMLY  166
            +E  + +T++ + + ++L+++A+SG ++SAEQ++ L+S +      AP  A  +++PM  
Sbjct  70   EENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSTFS-----APTSALFSASPM--  122

Query  167  SANAAAGQGMADSDLWDMISDQIGKIKDNYLGVYENVVGQYTDFYKAFSDILSQMANWIK  226
               A +   ++D+++WDM+S++I+ I D+YLGVYENVV+ YTDFY+AFSDILS+M+ W+ 
Sbjct  123  ---AQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLS  179

Query  227  PGGDGNKVKLNVDalkaaleklkkDFSLGDNLDNKKAVLFPAQSKDGGIQGGSESDARKW  286
            PG DGN +KLNVD+LK+ +  L + ++      NK+++LFP+Q+ ++G+  ++ ++A +W
Sbjct  180  PGKDGNTIKLNVDSLKSEISSLINKYTQ----INKNTILFPSQT-GSGMTTATKAEAEQW  234

Query  287  AKEMGLPDAPPPGFSCVQKAADGNWVVVVDMTPIDTMIRDVGALGSGTELELDNAKFQAW  346
             KE+ LPD      SC+ KA+++  VV+VD  P+  M+ D+ ++GSG+ LELDNAK+QAW
Sbjct  235  IKELNLPD------SCL-KASGSGYVVLVDTGPLSKMVSDLNGIGSGSALELDNAKYQAW  287

Query  347  QSGFKAQEENLKNTLQTLTQKYSNANSLFDNLVKVLSSTISSCLETAKSFLQ  398
            QSGFKAQEENLK TLQTLTQKYSNANSL+DNLVKVLSSTISS LETAKSFLQ
Sbjct  288  QSGFKAQEENLKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQ  339