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PAthogenisity Island DataBase (PAI DB)

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Homologs of hrpF gene of EF514224

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) HrpF
( YP_234290.1 )

type III secretion protein HrpF

NC_007005
(Pseudomonas syringae B728a)

1e-27

100

2) hrpF
( YP_273537.1 )

type III secretion component protein HrpF

NC_005773
(Pseudomonas syringae 1448A)

6e-27

• Sequence Alignments

1) HrpF in NC_007005


> EF514224|24|G21|818899|AAB05083.1|Pseudomonas_syringae_pv._syringae_61|-|19574..19798|hrpF|-|HrpF
Length=74

 Score =  115 bits (420),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 74/74 (100%), Positives = 74/74 (100%), Gaps = 0/74 (0%)

Query  1   MINFKSLQNNLDSTLTRALSDVDDVLDGGNGHFTADDIDAFSEASQQAAVSSNIADQCQQ  60
           MINFKSLQNNLDSTLTRALSDVDDVLDGGNGHFTADDIDAFSEASQQAAVSSNIADQCQQ
Sbjct  1   MINFKSLQNNLDSTLTRALSDVDDVLDGGNGHFTADDIDAFSEASQQAAVSSNIADQCQQ  60

Query  61  AGYKMTKNVIDGFQ  74
           AGYKMTKNVIDGFQ
Sbjct  61  AGYKMTKNVIDGFQ  74

2) hrpF in NC_005773


> EF514224|24|G21|818899|AAB05083.1|Pseudomonas_syringae_pv._syringae_61|-|19574..19798|hrpF|-|HrpF
Length=74

 Score =  113 bits (412),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 70/74 (95%), Positives = 73/74 (99%), Gaps = 0/74 (0%)

Query  1   MISFKSLQNNLDSTLNRALSDVDDVLEGGNGHFTADDIDAFGEASQQAAVSSNIADQCQQ  60
           MI+FKSLQNNLDSTL RALSDVDDVL+GGNGHFTADDIDAF+EASQQAAVSSNIADQCQQ
Sbjct  1   MINFKSLQNNLDSTLTRALSDVDDVLDGGNGHFTADDIDAFSEASQQAAVSSNIADQCQQ  60

Query  61  AGYKMTKNVIDGFQ  74
           AGYKMTKNVIDGFQ
Sbjct  61  AGYKMTKNVIDGFQ  74