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PAthogenisity Island DataBase (PAI DB)

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Homologs of orgA gene of AY508229

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) SG2075
( YP_455755.1 )

type III secretion apparatus

NC_007712
(Sodalis glossinidius morsitans)

1e-77

100

2) CV_2419
( NP_902089.1 )

oxygen-regulated invasion protein

NC_005085
(Chromobacterium violaceum ATCC 12472)

3e-13

• Sequence Alignments

1) SG2075 in NC_007712


> AY508229|24|G19|45504783|AAS66873.1|Sodalis_glossinidius|+|23217..23816|orgA|-|OrgA
Length=199

 Score =  281 bits (1053),  Expect = 1e-77, Method: Compositional matrix adjust.
 Identities = 199/199 (100%), Positives = 199/199 (100%), Gaps = 0/199 (0%)

Query  2    MSVVPLDSVMFDPLTWIHPSRFALPASLDGIAQRSIVNDMLISLYGLSLERPALPTHSLP  61
            MSVVPLDSVMFDPLTWIHPSRFALPASLDGIAQRSIVNDMLISLYGLSLERPALPTHSLP
Sbjct  1    MSVVPLDSVMFDPLTWIHPSRFALPASLDGIAQRSIVNDMLISLYGLSLERPALPTHSLP  60

Query  62   RQFVEAWHLLPQIALLMACQRHRASLAKGGYGASLPDWLRQFAALSLVSSRSSPGETIPP  121
            RQFVEAWHLLPQIALLMACQRHRASLAKGGYGASLPDWLRQFAALSLVSSRSSPGETIPP
Sbjct  61   RQFVEAWHLLPQIALLMACQRHRASLAKGGYGASLPDWLRQFAALSLVSSRSSPGETIPP  120

Query  122  PAQLLAWGKYELLAFAGSLPRGLRQRLDLLFPPEEGrddlsrlslpppcrlllklAFQHA  181
            PAQLLAWGKYELLAFAGSLPRGLRQRLDLLFPPEEGRDDLSRLSLPPPCRLLLKLAFQHA
Sbjct  121  PAQLLAWGKYELLAFAGSLPRGLRQRLDLLFPPEEGRDDLSRLSLPPPCRLLLKLAFQHA  180

Query  182  KRHPATPDTADLRRYIDQT  200
            KRHPATPDTADLRRYIDQT
Sbjct  181  KRHPATPDTADLRRYIDQT  199

2) CV_2419 in NC_005085


> AY508229|24|G19|45504783|AAS66873.1|Sodalis_glossinidius|+|23217..23816|orgA|-|OrgA
Length=199

 Score = 67.9 bits (238),  Expect = 3e-13, Method: Compositional matrix adjust.
 Identities = 62/153 (41%), Positives = 95/153 (63%), Gaps = 3/153 (1%)

Query  5    AVQLRALLFDPLSYLHRDRLRLPPALAGAEQRRLVNDMLIAGYRLRTDWSPDPADRSHGL  64
             V L +++FDPL+ +H  R+ LP++L G  QR +VNDMLI+ Y L  ++++ P++     
Sbjct  3    VVPLDSVMFDPLTWIHPSRFALPASLDGIAQRSIVNDMLISLYGLSLERPALPTHSLPRQ  62

Query  65   WLAEWHRLPQAAYLMGCQllrarlaarggllrlpgwargFAAMQIGAEWPAAPLDEAPGH  124
             +  WH LPQ A LM+CQ  RA LA  G    LP+W R FAA+ + + ++++  +E+   
Sbjct  63   FVEAWHLLPQIALLMACQRHRASLAKGGYGASLPDWLRQFAALSLVSSRSSP--GETIPP  120

Query  125  DAILLA-GFGQLLSWRERMPEALAQRLPLLFPA  156
             A LLA G  +LL+    +P +L QRL LLFP+
Sbjct  121  PAQLLAWGKYELLAFAGSLPRGLRQRLDLLFPP  153