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PAthogenisity Island DataBase (PAI DB)

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Homologs of int gene of AF410775

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) int
( YP_008167977.1 )

Integrase

NC_021670
(Staphylococcus aureus Bmb9393)

3e-168

2) SARLGA251_07460
( YP_005754746.1 )

integrase

NC_017349
(Staphylococcus aureus LGA251)

2e-167

3) int3
( YP_005748445.1 )

prophage L54a integrase

NC_017342
(Staphylococcus aureus TCH60)

5e-167

4) SAAG_01239
( YP_008448745.1 )

integrase

NC_022113
(Staphylococcus aureus 55/2053)

6e-167

5) SAAV_0787
( YP_003281710.1 )

pathogenicity island protein, integrase

NC_013450
(Staphylococcus aureus ED98)

2e-166

6) SLGD_02010
( YP_003472225.1 )

pathogenicity island protein, integrase

NC_013893
(Staphylococcus lugdunensis HKU09-01)

1e-165

7) SACOL0885
( YP_185756.1 )

pathogenicity island protein, integrase

NC_002951
(Staphylococcus aureus COL)

5e-162

100

8) M013TW_0806
( YP_005297248.1 )

Integrase, superantigen-encoding pathogenicityislands SaPI

NC_016928
(Staphylococcus aureus M013)

5e-162

100

9) SA40_0754
( YP_008587399.1 )

integrase

NC_022443
(Staphylococcus aureus SA40)

5e-162

100

10) SA957_0769
( YP_008584867.1 )

integrase

NC_022442
(Staphylococcus aureus SA957)

5e-162

100

11) int
( YP_493499.1 )

integrase

NC_007793
(Staphylococcus aureus FPR3757)

9e-161

12) USA300HOU_0850
( YP_001574750.1 )

integrase

NC_010079
(Staphylococcus aureus TCH1516)

9e-161

13) int
( YP_005744209.1 )

pathogenicity island protein, integrase

NC_017341
(Staphylococcus aureus JKD6008)

2e-158

14) rbsU
( YP_005752134.1 )

Pathogenicity island protein, integrase

NC_017347
(Staphylococcus aureus T0131)

2e-158

15) SATW20_08890
( YP_005730901.1 )

integrase

NC_017331
(Staphylococcus aureus TW20)

2e-158

16) int
( YP_254496.1 )

integrase

NC_007168
(Staphylococcus haemolyticus JCSC1435)

6e-113

17) A284_11360
( YP_007386029.1 )

Integrase

NC_020164
(Staphylococcus warneri SG1)

4e-106

18) SAT0131_00377
( YP_005751641.1 )

Integrase

NC_017347
(Staphylococcus aureus T0131)

3e-88

19) SAOV_0274
( YP_005735791.1 )

putative prophage integrase

NC_017337
(Staphylococcus aureus ED133)

4e-83

20) SAB0258c
( YP_415762.1 )

phage-related integrase

NC_007622
(Staphylococcus aureus RF122)

4e-83

21) SAA6008_00346
( YP_005743732.1 )

pathogenicity island protein, integrase

NC_017341
(Staphylococcus aureus JKD6008)

2e-79

22) SAR0366
( YP_039823.1 )

integrase

NC_002952
(Staphylococcus aureus MRSA252)

2e-79

23) SAPIG0334
( YP_005733144.1 )

integrase

NC_017333
(Staphylococcus aureus ST398)

4e-79

24) C248_0310
( YP_006709071.1 )

phage integrase family protein

NC_018608
(Staphylococcus aureus 08BA02176)

3e-77

25) int
( YP_185210.1 )

prophage L54a, integrase

NC_002951
(Staphylococcus aureus COL)

3e-72

26) SaurJH1_0311
( YP_001315460.1 )

phage integrase family protein

NC_009632
(Staphylococcus aureus JH1)

8e-72

27) SaurJH9_0304
( YP_001245687.1 )

phage integrase family protein

NC_009487
(Staphylococcus aureus JH9)

8e-72

28) int
( YP_001331297.1 )

integrase

NC_009641
(Staphylococcus aureus Newman)

8e-72

29) SATW20_03260
( YP_005730346.1 )

phage integrase

NC_017331
(Staphylococcus aureus TW20)

8e-72

30) SaurJH1_1039
( YP_001316182.1 )

phage integrase family protein

NC_009632
(Staphylococcus aureus JH1)

1e-69

31) SaurJH9_1020
( YP_001246397.1 )

phage integrase family protein

NC_009487
(Staphylococcus aureus JH9)

1e-69

32) SAS0891
( YP_043018.1 )

phage integrase

NC_002953
(Staphylococcus aureus MSSA476)

4e-69

33) SABB_00412
( YP_008168652.1 )

putative phage integrase

NC_021670
(Staphylococcus aureus Bmb9393)

7e-67

34) CA347_1485
( YP_008128343.1 )

phage integrase family protein

NC_021554
(Staphylococcus aureus CA-347)

7e-67

35) SAUSA300_1438
( YP_494135.1 )

phiSLT ORF401-like protein, integrase

NC_007793
(Staphylococcus aureus FPR3757)

7e-67

36) SAEMRSA15_14090
( YP_006237753.1 )

phage integrase

NC_017763
(Staphylococcus aureus HO 5096 0412)

7e-67

37) SAA6159_01417
( YP_005739563.1 )

pathogenicity island protein, integrase

NC_017338
(Staphylococcus aureus JKD6159)

7e-67

38) M013TW_1502
( YP_005297931.1 )

phage integrase

NC_016928
(Staphylococcus aureus M013)

7e-67

39) BN843_14930
( YP_007868558.1 )

Phage integrase

NC_021059
(Staphylococcus aureus M1)

7e-67

40) SA957_1443
( YP_008585538.1 )

integrase

NC_022442
(Staphylococcus aureus SA957)

7e-67

41) USA300HOU_1490
( YP_001575377.1 )

integrase

NC_010079
(Staphylococcus aureus TCH1516)

7e-67

42) int2
( YP_005747735.1 )

prophage L54a integrase

NC_017342
(Staphylococcus aureus TCH60)

1e-66

43) SAOUHSC_01582
( YP_500097.1 )

bacteriophage integrase

NC_007795
(Staphylococcus aureus NCTC 8325)

4e-66

44) SAPIG1554
( YP_005734350.1 )

integrase

NC_017333
(Staphylococcus aureus ST398)

9e-63

45) SAAG_01400
( YP_008449411.1 )

integrase

NC_022113
(Staphylococcus aureus 55/2053)

6e-62

46) SAR1562
( YP_040964.1 )

phage integrase

NC_002952
(Staphylococcus aureus MRSA252)

6e-62

47) int
( NP_646259.1 )

integrase

NC_003923
(Staphylococcus aureus MW2)

6e-62

• Sequence Alignments

1) int in NC_021670


> AF410775|24|G24|15625530|AAL04148.1|Staphylococcus_aureus_subsp._aureus_COL|+|14574..15794|int|-|integrase-like 
protein
Length=406

 Score =  584 bits (2206),  Expect = 3e-168, Method: Compositional matrix adjust.
 Identities = 396/406 (98%), Positives = 400/406 (99%), Gaps = 0/406 (0%)

Query  1    MWHEKFTNKHGETKYRYYEKYKDPLTNKWRRVSVVLNKNGKQSQKEAQRRLNERIEAKLN  60
            MW EKF NK+ ETKYRYYEKYKDPLT KWRRVSVVLNKNGKQSQKEAQR LNERIEAKLN
Sbjct  1    MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60

Query  61   DNTPTTLKSLTFHVACDEWFQNYIKTSGSKRttiktklsklntlkkFVDEDILINKITLS  120
            D+TPTTLKSLTFHVACDEWFQ+YIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS
Sbjct  61   DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS  120

Query  121  YAQQVFDEMDSKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV  180
            YAQQVFDEMD+KGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV
Sbjct  121  YAQQVFDEMDNKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV  180

Query  181  KAKRNKYLELNEIQSIIKDINMKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQ  240
            KAKRNKYLELNEIQSIIKDIN KAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQ
Sbjct  181  KAKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQ  240

Query  241  NEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENK  300
            NEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENK
Sbjct  241  NEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENK  300

Query  301  KDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVsshilrhshislls  360
            KDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLS
Sbjct  301  KDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLS  360

Query  361  QQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQVKLG  406
            QQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQVKLG
Sbjct  361  QQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQVKLG  406

2) SARLGA251_07460 in NC_017349


> AF410775|24|G24|15625530|AAL04148.1|Staphylococcus_aureus_subsp._aureus_COL|+|14574..15794|int|-|integrase-like 
protein
Length=406

 Score =  581 bits (2194),  Expect = 2e-167, Method: Compositional matrix adjust.
 Identities = 391/406 (97%), Positives = 399/406 (99%), Gaps = 0/406 (0%)

Query  1    MWHDKFTNKHGDVQYRFYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60
            MW +KF NK+ + +YR+YEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN
Sbjct  1    MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60

Query  61   DKTPTTLKSLTFHAASDEWFQNYIKTSGSKRttiktklsklntlkkFVDEDILINKITLS  120
            DKTPTTLKSLTFH A DEWFQ+YIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS
Sbjct  61   DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS  120

Query  121  YAQQIFDEMDSKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV  180
            YAQQ+FDEMD+KGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV
Sbjct  121  YAQQVFDEMDNKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV  180

Query  181  KAKRNKYLELNEIQSIIKDINMKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQ  240
            KAKRNKYLELNEIQSIIKDIN KAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQ
Sbjct  181  KAKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQ  240

Query  241  NEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENK  300
            NEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENK
Sbjct  241  NEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENK  300

Query  301  KDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVsshilrhshislls  360
            KDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLS
Sbjct  301  KDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLS  360

Query  361  QQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQVKLG  406
            QQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQVKLG
Sbjct  361  QQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQVKLG  406

3) int3 in NC_017342


> AF410775|24|G24|15625530|AAL04148.1|Staphylococcus_aureus_subsp._aureus_COL|+|14574..15794|int|-|integrase-like 
protein
Length=406

 Score =  580 bits (2189),  Expect = 5e-167, Method: Compositional matrix adjust.
 Identities = 392/406 (97%), Positives = 400/406 (99%), Gaps = 0/406 (0%)

Query  9    MWYEKFTNKHGETKYRYYEKYKDPLTNKWRRVSVVLNKNGKQSQKEAQRRLNERIEAKLN  68
            MW EKF NK+ ETKYRYYEKYKDPLT KWRRVSVVLNKNGKQSQKEAQR LNERIEAKLN
Sbjct  1    MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60

Query  69   DNTPTTLKSLTFHVACDEWFQNYIKTSGSKRttiktklsklntlkkFVDEDILINKITLS  128
            D+TPTTLKSLTFHVACDEWFQ+YIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS
Sbjct  61   DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS  120

Query  129  YAQQVFDEMDSKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV  188
            YAQQVFDEMD+KGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV
Sbjct  121  YAQQVFDEMDNKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV  180

Query  189  KAKRNKYLELNEIQSIIKDINMKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIK  248
            KAKRNKYLELNEIQSIIKDIN KAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAI+
Sbjct  181  KAKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQ  240

Query  249  NEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENK  308
            NEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENK
Sbjct  241  NEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENK  300

Query  309  KDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILRESAKDVGIEKEisshilrhshislls  368
            KDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILRE+AKDVGI+KE+SSHILRHSHISLLS
Sbjct  301  KDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLS  360

Query  369  QQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQVKLG  414
            QQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQVKLG
Sbjct  361  QQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQVKLG  406

4) SAAG_01239 in NC_022113


> AF410775|24|G24|15625530|AAL04148.1|Staphylococcus_aureus_subsp._aureus_COL|+|14574..15794|int|-|integrase-like 
protein
Length=406

 Score =  579 bits (2188),  Expect = 6e-167, Method: Compositional matrix adjust.
 Identities = 392/406 (97%), Positives = 400/406 (99%), Gaps = 0/406 (0%)

Query  1    MWYEKFTNKHGETKYRYYEKYKDPLTNKWRRVSVVLNKNGKQSQKEAQRRLNERIEAKLN  60
            MW EKF NK+ ETKYRYYEKYKDPLT KWRRVSVVLNKNGKQSQKEAQR LNERIEAKLN
Sbjct  1    MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60

Query  61   DNTPTTLKSLTFHVACDEWFQNYIKTSGSKRttiktklsklntlkkFVDEDILINKITLS  120
            D+TPTTLKSLTFHVACDEWFQ+YIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS
Sbjct  61   DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS  120

Query  121  YAQQVFDEMDSKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV  180
            YAQQVFDEMD+KGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV
Sbjct  121  YAQQVFDEMDNKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV  180

Query  181  KAKRNKYLELNEIQSIIKDINMKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIK  240
            KAKRNKYLELNEIQSIIKDIN KAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAI+
Sbjct  181  KAKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQ  240

Query  241  NEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENK  300
            NEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENK
Sbjct  241  NEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENK  300

Query  301  KDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILRESAKDVGIEKEisshilrhshislls  360
            KDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILRE+AKDVGI+KE+SSHILRHSHISLLS
Sbjct  301  KDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLS  360

Query  361  QQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQVKLG  406
            QQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQVKLG
Sbjct  361  QQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQVKLG  406

5) SAAV_0787 in NC_013450


> AF410775|24|G24|15625530|AAL04148.1|Staphylococcus_aureus_subsp._aureus_COL|+|14574..15794|int|-|integrase-like 
protein
Length=406

 Score =  578 bits (2181),  Expect = 2e-166, Method: Compositional matrix adjust.
 Identities = 390/406 (97%), Positives = 399/406 (99%), Gaps = 0/406 (0%)

Query  1    MWYEKFTNKHGETKYRYYEKYKDPLTNKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60
            MW EKF NK+ ETKYRYYEKYKDPLT KWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN
Sbjct  1    MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60

Query  61   DNTPTTLKSLTFHVACDEWFQNYIKTSGSKRttiktklsklntlkkFVDEDILINKITLS  120
            D+TPTTLKSLTFHVACDEWFQ+YIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS
Sbjct  61   DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS  120

Query  121  YAQQVFDELDSKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV  180
            YAQQVFDE+D+KGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV
Sbjct  121  YAQQVFDEMDNKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV  180

Query  181  KAKRNKYLELNEIQSIIKDINMKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIK  240
            KAKRNKYLELNEIQSIIKDIN KAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAI+
Sbjct  181  KAKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQ  240

Query  241  NEVIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENK  300
            NE IDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENK
Sbjct  241  NEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENK  300

Query  301  KDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILRKSAKDVGIEKEisshilrhshislls  360
            KDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILR +AKDVGI+KE+SSHILRHSHISLLS
Sbjct  301  KDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLS  360

Query  361  QQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQVKLG  406
            QQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQVKLG
Sbjct  361  QQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQVKLG  406

6) SLGD_02010 in NC_013893


> AF410775|24|G24|15625530|AAL04148.1|Staphylococcus_aureus_subsp._aureus_COL|+|14574..15794|int|-|integrase-like 
protein
Length=406

 Score =  575 bits (2173),  Expect = 1e-165, Method: Compositional matrix adjust.
 Identities = 390/406 (97%), Positives = 397/406 (98%), Gaps = 0/406 (0%)

Query  1    MWHEKFTNKHGNIQYRFYEKYKDPLTNKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60
            MW EKF NK+ + +YR+YEKYKDPLT KWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN
Sbjct  1    MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60

Query  61   DKTPTTLKSLTFHAASDEWFQNYIKTSGSKRttiktklsklntlkkFVDEDILINKITLS  120
            DKTPTTLKSLTFH A DEWFQ+YIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS
Sbjct  61   DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS  120

Query  121  YAQQVFDEMDSKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV  180
            YAQQVFDEMD+KGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV
Sbjct  121  YAQQVFDEMDNKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV  180

Query  181  KAKRNKYLELNEIQSIIKDINMKAQKMHSCIHKRFYLFVALMTEFQALNGMRIGEMLAIQ  240
            KAKRNKYLELNEIQSIIKDIN KAQKMHS IHKRFYLFVALMTEFQALNGMRIGEMLAIQ
Sbjct  181  KAKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQ  240

Query  241  NEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENK  300
            NEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENK
Sbjct  241  NEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENK  300

Query  301  KDSKWNDGYLNRNFIFTNHKGNPMQTERFNKILREAAKDVGIDKEVsshilrhshislls  360
            KDSKWNDGYLNRNF+FTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLS
Sbjct  301  KDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLS  360

Query  361  QQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQVKLG  406
            QQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQVKLG
Sbjct  361  QQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQVKLG  406

7) SACOL0885 in NC_002951


> AF410775|24|G24|15625530|AAL04148.1|Staphylococcus_aureus_subsp._aureus_COL|+|14574..15794|int|-|integrase-like 
protein
Length=406

 Score =  563 bits (2126),  Expect = 5e-162, Method: Compositional matrix adjust.
 Identities = 406/406 (100%), Positives = 406/406 (100%), Gaps = 0/406 (0%)

Query  1    MWLEKFknknketkyryyekykDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60
            MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN
Sbjct  1    MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60

Query  61   DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRttiktklsklntlkkFVDEDILINKITLS  120
            DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS
Sbjct  61   DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS  120

Query  121  YAQQVFDEMDNKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV  180
            YAQQVFDEMDNKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV
Sbjct  121  YAQQVFDEMDNKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV  180

Query  181  KAKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQ  240
            KAKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQ
Sbjct  181  KAKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQ  240

Query  241  NEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENK  300
            NEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENK
Sbjct  241  NEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENK  300

Query  301  KDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVsshilrhshislls  360
            KDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLS
Sbjct  301  KDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLS  360

Query  361  QQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQVKLG  406
            QQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQVKLG
Sbjct  361  QQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQVKLG  406

8) M013TW_0806 in NC_016928


> AF410775|24|G24|15625530|AAL04148.1|Staphylococcus_aureus_subsp._aureus_COL|+|14574..15794|int|-|integrase-like 
protein
Length=406

 Score =  563 bits (2126),  Expect = 5e-162, Method: Compositional matrix adjust.
 Identities = 406/406 (100%), Positives = 406/406 (100%), Gaps = 0/406 (0%)

Query  1    MWLEKFknknketkyryyekykDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60
            MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN
Sbjct  1    MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60

Query  61   DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRttiktklsklntlkkFVDEDILINKITLS  120
            DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS
Sbjct  61   DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS  120

Query  121  YAQQVFDEMDNKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV  180
            YAQQVFDEMDNKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV
Sbjct  121  YAQQVFDEMDNKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV  180

Query  181  KAKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQ  240
            KAKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQ
Sbjct  181  KAKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQ  240

Query  241  NEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENK  300
            NEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENK
Sbjct  241  NEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENK  300

Query  301  KDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVsshilrhshislls  360
            KDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLS
Sbjct  301  KDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLS  360

Query  361  QQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQVKLG  406
            QQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQVKLG
Sbjct  361  QQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQVKLG  406

9) SA40_0754 in NC_022443


> AF410775|24|G24|15625530|AAL04148.1|Staphylococcus_aureus_subsp._aureus_COL|+|14574..15794|int|-|integrase-like 
protein
Length=406

 Score =  563 bits (2126),  Expect = 5e-162, Method: Compositional matrix adjust.
 Identities = 406/406 (100%), Positives = 406/406 (100%), Gaps = 0/406 (0%)

Query  1    MWLEKFknknketkyryyekykDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60
            MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN
Sbjct  1    MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60

Query  61   DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRttiktklsklntlkkFVDEDILINKITLS  120
            DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS
Sbjct  61   DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS  120

Query  121  YAQQVFDEMDNKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV  180
            YAQQVFDEMDNKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV
Sbjct  121  YAQQVFDEMDNKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV  180

Query  181  KAKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQ  240
            KAKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQ
Sbjct  181  KAKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQ  240

Query  241  NEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENK  300
            NEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENK
Sbjct  241  NEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENK  300

Query  301  KDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVsshilrhshislls  360
            KDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLS
Sbjct  301  KDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLS  360

Query  361  QQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQVKLG  406
            QQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQVKLG
Sbjct  361  QQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQVKLG  406

10) SA957_0769 in NC_022442


> AF410775|24|G24|15625530|AAL04148.1|Staphylococcus_aureus_subsp._aureus_COL|+|14574..15794|int|-|integrase-like 
protein
Length=406

 Score =  563 bits (2126),  Expect = 5e-162, Method: Compositional matrix adjust.
 Identities = 406/406 (100%), Positives = 406/406 (100%), Gaps = 0/406 (0%)

Query  1    MWLEKFknknketkyryyekykDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60
            MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN
Sbjct  1    MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60

Query  61   DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRttiktklsklntlkkFVDEDILINKITLS  120
            DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS
Sbjct  61   DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS  120

Query  121  YAQQVFDEMDNKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV  180
            YAQQVFDEMDNKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV
Sbjct  121  YAQQVFDEMDNKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV  180

Query  181  KAKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQ  240
            KAKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQ
Sbjct  181  KAKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQ  240

Query  241  NEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENK  300
            NEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENK
Sbjct  241  NEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENK  300

Query  301  KDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVsshilrhshislls  360
            KDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLS
Sbjct  301  KDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLS  360

Query  361  QQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQVKLG  406
            QQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQVKLG
Sbjct  361  QQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQVKLG  406

11) int in NC_007793


> AF410775|24|G24|15625530|AAL04148.1|Staphylococcus_aureus_subsp._aureus_COL|+|14574..15794|int|-|integrase-like 
protein
Length=406

 Score =  559 bits (2110),  Expect = 9e-161, Method: Compositional matrix adjust.
 Identities = 401/406 (99%), Positives = 404/406 (99%), Gaps = 0/406 (0%)

Query  1    MWLEKFknknketkyryyekykDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEEKLN  60
            MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIE KLN
Sbjct  1    MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60

Query  61   DKKPTTLKSLTFHVACDEWFQNYIKTSGSKRttiktklsklntlkkFVDEDILINKITLS  120
            DK PTTLKSLTFHVACDEWFQ+YIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS
Sbjct  61   DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS  120

Query  121  YAQQVFDEMDSKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV  180
            YAQQVFDEMD+KGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV
Sbjct  121  YAQQVFDEMDNKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV  180

Query  181  KAKRNKYLELNEIESIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQ  240
            KAKRNKYLELNEI+SIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQ
Sbjct  181  KAKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQ  240

Query  241  NEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENK  300
            NEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENK
Sbjct  241  NEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENK  300

Query  301  KDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVsshilrhshislls  360
            KDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLS
Sbjct  301  KDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLS  360

Query  361  QQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQVKLG  406
            QQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQVKLG
Sbjct  361  QQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQVKLG  406

12) USA300HOU_0850 in NC_010079


> AF410775|24|G24|15625530|AAL04148.1|Staphylococcus_aureus_subsp._aureus_COL|+|14574..15794|int|-|integrase-like 
protein
Length=406

 Score =  559 bits (2110),  Expect = 9e-161, Method: Compositional matrix adjust.
 Identities = 401/406 (99%), Positives = 404/406 (99%), Gaps = 0/406 (0%)

Query  1    MWLEKFknknketkyryyekykDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEEKLN  60
            MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIE KLN
Sbjct  1    MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60

Query  61   DKKPTTLKSLTFHVACDEWFQNYIKTSGSKRttiktklsklntlkkFVDEDILINKITLS  120
            DK PTTLKSLTFHVACDEWFQ+YIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS
Sbjct  61   DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS  120

Query  121  YAQQVFDEMDSKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV  180
            YAQQVFDEMD+KGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV
Sbjct  121  YAQQVFDEMDNKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV  180

Query  181  KAKRNKYLELNEIESIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQ  240
            KAKRNKYLELNEI+SIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQ
Sbjct  181  KAKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQ  240

Query  241  NEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENK  300
            NEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENK
Sbjct  241  NEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENK  300

Query  301  KDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVsshilrhshislls  360
            KDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLS
Sbjct  301  KDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLS  360

Query  361  QQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQVKLG  406
            QQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQVKLG
Sbjct  361  QQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQVKLG  406

13) int in NC_017341


> AF410775|24|G24|15625530|AAL04148.1|Staphylococcus_aureus_subsp._aureus_COL|+|14574..15794|int|-|integrase-like 
protein
Length=406

 Score =  551 bits (2081),  Expect = 2e-158, Method: Compositional matrix adjust.
 Identities = 378/384 (99%), Positives = 380/384 (99%), Gaps = 0/384 (0%)

Query  23   DPLTNKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLNDKTPTTLKSLTFHAASDEWFQN  82
            DPLT KWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLNDKTPTTLKSLTFH A DEWFQ+
Sbjct  23   DPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLNDKTPTTLKSLTFHVACDEWFQS  82

Query  83   YIKTSGSKRttiktklsklntlkkFVDEDILINKITLSYAQQVFDEMDSKGYVYQVNKDA  142
            YIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLSYAQQVFDEMD+KGYVYQVNKDA
Sbjct  83   YIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLSYAQQVFDEMDNKGYVYQVNKDA  142

Query  143  LSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEVKAKRNKYLELNEIQSIIKDINM  202
            LSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEVKAKRNKYLELNEIQSIIKDIN 
Sbjct  143  LSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEVKAKRNKYLELNEIQSIIKDINT  202

Query  203  KAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHD  262
            KAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHD
Sbjct  203  KAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHD  262

Query  263  ESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKGN  322
            ESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKGN
Sbjct  263  ESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKGN  322

Query  323  PMQTERFNKILREAAKDVGIDKEVsshilrhshisllsQQGVSLKAIMDRVGHSDHRTTL  382
            PMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTL
Sbjct  323  PMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTL  382

Query  383  SIYSHVTEQMDKDMMNKLEQVKLG  406
            SIYSHVTEQMDKDMMNKLEQVKLG
Sbjct  383  SIYSHVTEQMDKDMMNKLEQVKLG  406

14) rbsU in NC_017347


> AF410775|24|G24|15625530|AAL04148.1|Staphylococcus_aureus_subsp._aureus_COL|+|14574..15794|int|-|integrase-like 
protein
Length=406

 Score =  551 bits (2081),  Expect = 2e-158, Method: Compositional matrix adjust.
 Identities = 378/384 (99%), Positives = 380/384 (99%), Gaps = 0/384 (0%)

Query  23   DPLTNKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLNDKTPTTLKSLTFHAASDEWFQN  82
            DPLT KWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLNDKTPTTLKSLTFH A DEWFQ+
Sbjct  23   DPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLNDKTPTTLKSLTFHVACDEWFQS  82

Query  83   YIKTSGSKRttiktklsklntlkkFVDEDILINKITLSYAQQVFDEMDSKGYVYQVNKDA  142
            YIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLSYAQQVFDEMD+KGYVYQVNKDA
Sbjct  83   YIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLSYAQQVFDEMDNKGYVYQVNKDA  142

Query  143  LSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEVKAKRNKYLELNEIQSIIKDINM  202
            LSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEVKAKRNKYLELNEIQSIIKDIN 
Sbjct  143  LSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEVKAKRNKYLELNEIQSIIKDINT  202

Query  203  KAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHD  262
            KAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHD
Sbjct  203  KAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHD  262

Query  263  ESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKGN  322
            ESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKGN
Sbjct  263  ESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKGN  322

Query  323  PMQTERFNKILREAAKDVGIDKEVsshilrhshisllsQQGVSLKAIMDRVGHSDHRTTL  382
            PMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTL
Sbjct  323  PMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTL  382

Query  383  SIYSHVTEQMDKDMMNKLEQVKLG  406
            SIYSHVTEQMDKDMMNKLEQVKLG
Sbjct  383  SIYSHVTEQMDKDMMNKLEQVKLG  406

15) SATW20_08890 in NC_017331


> AF410775|24|G24|15625530|AAL04148.1|Staphylococcus_aureus_subsp._aureus_COL|+|14574..15794|int|-|integrase-like 
protein
Length=406

 Score =  551 bits (2081),  Expect = 2e-158, Method: Compositional matrix adjust.
 Identities = 378/384 (99%), Positives = 380/384 (99%), Gaps = 0/384 (0%)

Query  23   DPLTNKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLNDKTPTTLKSLTFHAASDEWFQN  82
            DPLT KWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLNDKTPTTLKSLTFH A DEWFQ+
Sbjct  23   DPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLNDKTPTTLKSLTFHVACDEWFQS  82

Query  83   YIKTSGSKRttiktklsklntlkkFVDEDILINKITLSYAQQVFDEMDSKGYVYQVNKDA  142
            YIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLSYAQQVFDEMD+KGYVYQVNKDA
Sbjct  83   YIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLSYAQQVFDEMDNKGYVYQVNKDA  142

Query  143  LSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEVKAKRNKYLELNEIQSIIKDINM  202
            LSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEVKAKRNKYLELNEIQSIIKDIN 
Sbjct  143  LSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEVKAKRNKYLELNEIQSIIKDINT  202

Query  203  KAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHD  262
            KAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHD
Sbjct  203  KAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHD  262

Query  263  ESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKGN  322
            ESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKGN
Sbjct  263  ESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKGN  322

Query  323  PMQTERFNKILREAAKDVGIDKEVsshilrhshisllsQQGVSLKAIMDRVGHSDHRTTL  382
            PMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTL
Sbjct  323  PMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTL  382

Query  383  SIYSHVTEQMDKDMMNKLEQVKLG  406
            SIYSHVTEQMDKDMMNKLEQVKLG
Sbjct  383  SIYSHVTEQMDKDMMNKLEQVKLG  406

16) int in NC_007168


> AF410775|24|G24|15625530|AAL04148.1|Staphylococcus_aureus_subsp._aureus_COL|+|14574..15794|int|-|integrase-like 
protein
Length=406

 Score =  400 bits (1505),  Expect = 6e-113, Method: Compositional matrix adjust.
 Identities = 232/404 (58%), Positives = 323/404 (80%), Gaps = 1/404 (0%)

Query  1    MWHEKFTNKHGETKYRYYEKYKDPLTNKWRRTSVVLNKNGKQSQKEAQKRLNERIEAKLN  60
            MW EKF NK+ ETKYRYYEKYKDPLT KWRR SVVLNKNGKQSQKEAQ+ LNERIEAKLN
Sbjct  1    MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60

Query  61   DKTPTNLKTLTFHAACDEWFERYKLTSGSKQSTITTKSYKVAHIKRNIDKDILVENMNAD  120
            DKTPT LK+LTFH ACDEWF+ Y  TSGSK++TI TK  K+  +K+ +D DIL++++   
Sbjct  61   DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS  120

Query  121  VIQDLINSSLKDGLSHKLVKDDLSIIKNILRYAQKKYHITDISYIDDVVMPKKATTREEV  180
              Q++++   + G   ++ KD LSI+KN++ Y+++ Y + D+ ++ D+ + K+  + +EV
Sbjct  121  YAQQVFDEMDNKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV  180

Query  181  KAKRENYLEMAEVLAIVEELNRIANKKRASYMKRSYLFTAYIVEFQVLNGMRIGELLAIQ  240
            KAKR++YLE+ E+ +I+ ++N  A+K +++  KR YLF A + EFQ LNGMRIGE+LAIQ
Sbjct  181  KAKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQ  240

Query  241  PDNIDFENKKLVIDGTIHW-RKDGNKVGFKDTTKTASSYRTISLTTRSCDILRRVMLENK  299
             ++IDF+NK L I+GTIHW + ++   G KDTTKT SSYRTI+L++RSC+IL++ +LENK
Sbjct  241  NEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENK  300

Query  300  KAVQWEIMYVDRGFIFTSHRGNSLPLTSinrniqiaaqnigiEKHVTSHTMRHSHISLLS  359
            K  +W+  Y++R F+FT+H+GN++    +N+ ++ AA+++GI+K+V+SH +RHSHISLLS
Sbjct  301  KDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLS  360

Query  360  QLGVSLRAIMERVGHTDHKTTLQIYSHVTEQMDKDMMNKLEKIR  403
            Q GVSL+AIM+RVGH+DH+TTL IYSHVTEQMDKDMMNKLE+++
Sbjct  361  QQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQVK  404

17) A284_11360 in NC_020164


> AF410775|24|G24|15625530|AAL04148.1|Staphylococcus_aureus_subsp._aureus_COL|+|14574..15794|int|-|integrase-like 
protein
Length=406

 Score =  377 bits (1419),  Expect = 4e-106, Method: Compositional matrix adjust.
 Identities = 221/407 (55%), Positives = 322/407 (80%), Gaps = 8/407 (1%)

Query  1    MWHEKFTNKHGNVQYRYYEKYKDPLTNKWRRVSVVLNKNGKQSQKEAQKRLNERIEAKLN  60
            MW EKF NK+ + +YRYYEKYKDPLT KWRRVSVVLNKNGKQSQKEAQ+ LNERIEAKLN
Sbjct  1    MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60

Query  61   DKTPTTLKSLTFHAACDEWLEYYKNHSGSKATTIKEKVSNTNTVKNSIDKEVLINNITHT  120
            DKTPTTLKSLTFH ACDEW++ Y + SGSK TTIK K+S+ NT+K+ +D ++LIN+IT +
Sbjct  61   DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS  120

Query  121  YLQDIINEWAKLHSKGHV----QSLVIIIRSVFKYAFKYYDLQDISVLDKIDIPKKAKTR  176
            Y Q++++E   +++KG V    +  + I+++VF Y+ + Y LQD+  L  I + K+ K+ 
Sbjct  121  YAQQVFDE---MDNKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSY  177

Query  177  DELQAKRNNYLEDSEVKELLECFDYLIKHKNHSSRKRNYNMVKAIVQFQIANGMRIGELL  236
            DE++AKRN+YLE +E++ ++  ++   +  + + +KR Y  V  + +FQ  NGMRIGE+L
Sbjct  178  DEVKAKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEML  237

Query  237  AIKSDNINYEDKTLDIDGTINWVTDKETGAFGVKETTKTSKSYRTIGITTQSINLLKTLI  296
            AI++++I++++K+L+I+GTI+W  D E+G+FGVK+TTKT  SYRTIG++++S ++LK  I
Sbjct  238  AIQNEDIDFDNKSLNINGTIHWFHD-ESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAI  296

Query  297  LENKKENQWNDNFIDRGYIFTNTAGSPIDLNKINTIIKEATEISSIKKSVTTHTLRHTHI  356
            LENKK+++WND +++R ++FTN  G+P++ +++N I++EA+   +I K V++H LRH+HI
Sbjct  297  LENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHI  356

Query  357  STLAQLGINLKAIQERVGHSDYKTTLEIYTHVTDQMAKDMMNKLEKV  403
            S L+Q G++LKAI +RVGHSD +TTL IY+HVT+QM KDMMNKLE+V
Sbjct  357  SLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQV  403

18) SAT0131_00377 in NC_017347


> AF410775|24|G24|15625530|AAL04148.1|Staphylococcus_aureus_subsp._aureus_COL|+|14574..15794|int|-|integrase-like 
protein
Length=406

 Score =  318 bits (1192),  Expect = 3e-88, Method: Compositional matrix adjust.
 Identities = 188/405 (47%), Positives = 300/405 (75%), Gaps = 3/405 (0%)

Query  1    MWVREI-TKNNSTAYRYLERYTDPLTGKYKTVSVTRNKNNVRSQKDAQLELNKIIEQRLK  59
            MW+  +  KN+ T YRY E+Y DPLT+K + VSV  NKN  +SQK+AQ  LN  IE +L+
Sbjct  1    MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60

Query  60   HNSTKQLEKLTFHDVCDEWLEHYKTHSGSKPTTIKEKKSNANTVKNAIDSKVLISKITHT  119
            +++   L  LTFH  CDEW++ Y   SGSK TTIK K S+ NT+K+ +D  +LI+KIT +
Sbjct  61   DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS  120

Query  120  YLQNIINEWAKSHSIGHVQ-SLVIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAQTRNEL  178
            Y Q++++E  +   + +V+   + ++++VF Y+ + Y L+D+  L  I + K+ ++ +E+
Sbjct  121  YAQQVFDEMDNKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV  180

Query  179  QAKRNNYLEDSEVKELLQCFDYLIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLAIK  238
            +AKRN+YLE +E++ +++ ++   +  + + +KR Y  V  + EFQ  NGMRIGE+LAI+
Sbjct  181  KAKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQ  240

Query  239  KDNINYEDKTLDIDGTINWVTDKETGAFGVKETTKTSKSYRTIGLTTQSINLLKTLILDN  298
            +++I++++K+L+I+GTI+W  D E+G+FGVK+TTKT  SYRTIGL+++S ++LK  IL+N
Sbjct  241  NEDIDFDNKSLNINGTIHWFHD-ESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILEN  299

Query  299  KKENQWNEDFIDRGYVFTNTAGSPIDLNKVNSIIKEATEISSINKRVTTHTLRHTHISTL  358
            KK+++WN+++++R +VFTN  G+P++ ++ N I++EA+   +I+K V++H LRH+HIS L
Sbjct  300  KKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLL  359

Query  359  AQLGINLKAIQDRVGHSDYKTTLEIYTHVTDQMAKDMMNKLEEAN  403
            +Q G++LKAI DRVGHSD +TTL IY+HVT+QM KDMMNKLE+ +
Sbjct  360  SQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQVK  404

19) SAOV_0274 in NC_017337


> AF410775|24|G24|15625530|AAL04148.1|Staphylococcus_aureus_subsp._aureus_COL|+|14574..15794|int|-|integrase-like 
protein
Length=406

 Score =  301 bits (1128),  Expect = 4e-83, Method: Compositional matrix adjust.
 Identities = 192/408 (48%), Positives = 293/408 (72%), Gaps = 14/408 (3%)

Query  1    MWIEKFKNKNNETSYRYYEKYKDPYTDKWKRVSVVLNKNTKQAQKEAMFRLEEKIKEKLH  60
            MW+EKFKNKN+ET YRYYEKYKDP T KW+RVSVVLNKN KQ+QKEA   L+E+I  KL+
Sbjct  1    MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60

Query  61   DKSSNELKTLTFHSLLDEWLEYHTKTSGFKVTTLDNLKTRIKNIKKNSSQNLLLNKIDTK  120
            DK++  LK+LTFH   DEW++   KTSG K TT+    ++++ +KK   +++L+NKI   
Sbjct  61   DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS  120

Query  121  YMQTFINELSN---VYSANQVKRQLGHMKEAIKYAVKFYNYPNEHILNSVTLPKKSKTIE  177
            Y Q  ++E+ N   VY  N  K  L+  K+ + Y+ ++Y+  + ++L+ +TL K+ K+ +
Sbjct  121  YAQQVFDEMDNKGYVYQVN--KDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYD  178

Query  178  DIEKEEAKMYNYLEMEQVIQI-RDFILNDSNMQYRAR----ILVAGAVEVQALTGMRIGE  232
            ++    AK  +YLE++++  I +D+  +  +M+   +    ++VA   E QAL GMRIGE
Sbjct  179  EVK---AKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGE  235

Query  233  LLALQVKDVDLKNKTIDINGTIHRIKCN-AGFGHKDTTKTAGSKRKIAINSRIANVLKKI  291
            +LA+Q  D+D+ NK+++INGTIH++  + +GFG KDTTKT +S R I+++SR  ++LKK 
Sbjct  236  MLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKA  295

Query  292  MLENKKMQQWEPNYVDRGFIFTTCQGNPMQGSRINKRLSSAAESLNINKKVTTHTLRHTH  351
            +LENKK  +W+  Y++R F+FT  +GNPMQ  R+NK L  AA  + I+K V++H LRH+H
Sbjct  296  ILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSH  355

Query  352  ISLLAEMNISLKAIMKRVGHTDEKTTIKVYTHVTEKMDRELEQKLEKL  399
            ISLL++  +SLKAIM RVGH+D++TT+ +Y+HVTE+MD+++ +KLE++
Sbjct  356  ISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQV  403

20) SAB0258c in NC_007622


> AF410775|24|G24|15625530|AAL04148.1|Staphylococcus_aureus_subsp._aureus_COL|+|14574..15794|int|-|integrase-like 
protein
Length=406

 Score =  301 bits (1128),  Expect = 4e-83, Method: Compositional matrix adjust.
 Identities = 194/409 (48%), Positives = 297/409 (73%), Gaps = 16/409 (3%)

Query  1    MWMEKFKNKNNETSYRYYEKYKDPYTDKWKRVSVALNKNTKQAQKEAMFRLEEKIKEKLH  60
            MW+EKFKNKN+ET YRYYEKYKDP T KW+RVSV LNKN KQ+QKEA   L+E+I  KL+
Sbjct  1    MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60

Query  61   DKSSSILKTLTFHSLLDEWLEYHIKTSGFKVTTLDNLKTRIKNIKKNSSQNLLLNKIDTK  120
            DK+++ LK+LTFH   DEW++  IKTSG K TT+    ++++ +KK   +++L+NKI   
Sbjct  61   DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS  120

Query  121  YMQTFINELSN---VYSANQVKRQLGHMKEAIKYAVKFYNYPNEHILNSVTLPKKSKTIE  177
            Y Q  ++E+ N   VY  N  K  L+  K+ + Y+ ++Y+  + ++L+ +TL K+ K+ +
Sbjct  121  YAQQVFDEMDNKGYVYQVN--KDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYD  178

Query  178  DIEKEEAKMYNYLEMEQGIQ--IRDFILNDNNMQYRAR----ILVAGAVEVQALTGMRIG  231
            ++    AK  +YLE+++ IQ  I+D+  + ++M+   +    ++VA   E QAL GMRIG
Sbjct  179  EVK---AKRNKYLELNE-IQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIG  234

Query  232  ELLALQVKDVDLKNKTIDINGTIHRIKCN-AGFGHKDTTKTAGSKRKIAINSRIANVLKK  290
            E+LA+Q  D+D+ NK+++INGTIH++  + +GFG KDTTKT +S R I+++SR  ++LKK
Sbjct  235  EMLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKK  294

Query  291  IMLENKKMQQWEPSYVDRGFIFTTCQGNPMQGSRINKRLSSAAESLNINKKVTTHTLRHT  350
             +LENKK  +W+ +Y++R F+FT  +GNPMQ  R+NK L  AA  + I+K V++H LRH+
Sbjct  295  AILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHS  354

Query  351  HISLLAEMNISLKAIMKRVGHTDEKTTIKVYTHVTEKMDRELEQKLEKL  399
            HISLL++  +SLKAIM RVGH+D++TT+ +Y+HVTE+MD+++ +KLE++
Sbjct  355  HISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQV  403

21) SAA6008_00346 in NC_017341


> AF410775|24|G24|15625530|AAL04148.1|Staphylococcus_aureus_subsp._aureus_COL|+|14574..15794|int|-|integrase-like 
protein
Length=406

 Score =  288 bits (1080),  Expect = 2e-79, Method: Compositional matrix adjust.
 Identities = 188/404 (47%), Positives = 296/404 (74%), Gaps = 3/404 (0%)

Query  1    MWVREI-TKNNSTAYRYLERYTDPLTGKYKTVSVTRNKNNVRSQKDAQLELNKIIEQRLK  59
            MW+  +  KN+ T YRY E+Y DPLT+K + VSV  NKN  +SQK+AQ  LN  IE +L+
Sbjct  1    MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60

Query  60   HYSTKQLENLTFHDACDEWLEHYKTHSGSKPTTIKEKKSNTNTVKNAIDSKVLISKITHT  119
            + +   L +LTFH ACDEW++ Y   SGSK TTIK K S+ NT+K+ +D  +LI+KIT +
Sbjct  61   DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS  120

Query  120  YLQNIINEWAKSHSIGHVQ-SLVIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAQTRNEF  178
            Y Q++++E  +   + +V+   + ++++VF Y+ + Y L+D+  L  I + K+ ++ +E 
Sbjct  121  YAQQVFDEMDNKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV  180

Query  179  QAKRNNYLEDSEVKELLECFDYLIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLAIK  238
            +AKRN+YLE +E++ ++  ++   +  + + +KR Y  V  + EFQ  NGMRIGE+LAI+
Sbjct  181  KAKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQ  240

Query  239  TDNVDVENKTLEIDGTINWVTDVVTGAFGVKETTKTSKSYRTIGLTAQSInllkklmlen  298
             +++D +NK+L+I+GTI+W  D  +G+FGVK+TTKT  SYRTIGL+++S ++LKK +LEN
Sbjct  241  NEDIDFDNKSLNINGTIHWFHDE-SGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILEN  299

Query  299  kkenQWNDKFIDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHISTL  358
            KK+++WND +++R ++FTN  G+P++ ++ N+I++EA+   +I+K V++H LRH+HIS L
Sbjct  300  KKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLL  359

Query  359  AQLGINLKAIQERVGHSDYKTTLEIYTHVTDKMAKDMMNKLEGI  402
            +Q G++LKAI +RVGHSD +TTL IY+HVT++M KDMMNKLE +
Sbjct  360  SQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQV  403

22) SAR0366 in NC_002952


> AF410775|24|G24|15625530|AAL04148.1|Staphylococcus_aureus_subsp._aureus_COL|+|14574..15794|int|-|integrase-like 
protein
Length=406

 Score =  288 bits (1080),  Expect = 2e-79, Method: Compositional matrix adjust.
 Identities = 188/404 (47%), Positives = 296/404 (74%), Gaps = 3/404 (0%)

Query  1    MWVREI-TKNNSTAYRYLERYTDPLTGKYKTVSVTRNKNNVRSQKDAQLELNKIIEQRLK  59
            MW+  +  KN+ T YRY E+Y DPLT+K + VSV  NKN  +SQK+AQ  LN  IE +L+
Sbjct  1    MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60

Query  60   HYSTKQLENLTFHDACDEWLEHYKTHSGSKPTTIKEKKSNTNTVKNAIDSKVLISKITHT  119
            + +   L +LTFH ACDEW++ Y   SGSK TTIK K S+ NT+K+ +D  +LI+KIT +
Sbjct  61   DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS  120

Query  120  YLQNIINEWAKSHSIGHVQ-SLVIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAQTRNEF  178
            Y Q++++E  +   + +V+   + ++++VF Y+ + Y L+D+  L  I + K+ ++ +E 
Sbjct  121  YAQQVFDEMDNKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV  180

Query  179  QAKRNNYLEDSEVKELLECFDYLIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLAIK  238
            +AKRN+YLE +E++ ++  ++   +  + + +KR Y  V  + EFQ  NGMRIGE+LAI+
Sbjct  181  KAKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQ  240

Query  239  TDNVDVENKTLEIDGTINWVTDVVTGAFGVKETTKTSKSYRTIGLTAQSInllkklmlen  298
             +++D +NK+L+I+GTI+W  D  +G+FGVK+TTKT  SYRTIGL+++S ++LKK +LEN
Sbjct  241  NEDIDFDNKSLNINGTIHWFHDE-SGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILEN  299

Query  299  kkenQWNDKFIDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHISTL  358
            KK+++WND +++R ++FTN  G+P++ ++ N+I++EA+   +I+K V++H LRH+HIS L
Sbjct  300  KKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLL  359

Query  359  AQLGINLKAIQERVGHSDYKTTLEIYTHVTDKMAKDMMNKLEGI  402
            +Q G++LKAI +RVGHSD +TTL IY+HVT++M KDMMNKLE +
Sbjct  360  SQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQV  403

23) SAPIG0334 in NC_017333


> AF410775|24|G24|15625530|AAL04148.1|Staphylococcus_aureus_subsp._aureus_COL|+|14574..15794|int|-|integrase-like 
protein
Length=406

 Score =  288 bits (1077),  Expect = 4e-79, Method: Compositional matrix adjust.
 Identities = 191/406 (48%), Positives = 296/406 (73%), Gaps = 10/406 (2%)

Query  1    MWfekfknknneTKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEDKIKEKLN  60
            MW+EKFKNKN+ETKYRYYEKYKDP T KW+RVSVVLNKN KQSQKEA   L+++I  KLN
Sbjct  1    MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60

Query  61   NQSSSILKTLTFHTLLDEWFEYHTKTSGFKVTTLDNLKTRIKNIKKNSSQNLLLNKIDTK  120
            +++++ LK+LTFH   DEWF+   KTSG K TT+    ++++ +KK   +++L+NKI   
Sbjct  61   DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS  120

Query  121  YMQTFINELSN-IYSENQVKRQLGHMKEAIKYAVKFYNYPNEHILNSVTLPKKSKTIEDI  179
            Y Q  ++E+ N  Y  +  K  L+  K+ + Y+ ++Y+  + ++L+ +TL K+ K+ +++
Sbjct  121  YAQQVFDEMDNKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV  180

Query  180  EKEEAKMYNYLEMEQVIQI-RDFILNDNNMQYRAR----ILVAGAVEVQALTGMRIGELL  234
                AK  +YLE++++  I +D+  + ++M+   +    ++VA   E QAL GMRIGE+L
Sbjct  181  K---AKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEML  237

Query  235  ALQVKDVDLKNKTIDINGTIHRIKCN-AGFGHKDTTKTAGSRRKIAINSRIANVLKKIML  293
            A+Q  D+D+ NK+++INGTIH++  + +GFG KDTTKT +S R I+++SR  ++LKK +L
Sbjct  238  AIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAIL  297

Query  294  ENKKMQQWEPSYVDRGFIFTTCQGNPMQGSRINKRLSSAAESLNINKKVTTHTLRHTHIS  353
            ENKK  +W+ +Y++R F+FT  +GNPMQ  R+NK L  AA  + I+K V++H LRH+HIS
Sbjct  298  ENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHIS  357

Query  354  LLAEMNISLKAIMKRVGHTDEKTTIKVYTHVTEKMDRELEQKLEKL  399
            LL++  +SLKAIM RVGH+D++TT+ +Y+HVTE+MD+++ +KLE++
Sbjct  358  LLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQV  403

24) C248_0310 in NC_018608


> AF410775|24|G24|15625530|AAL04148.1|Staphylococcus_aureus_subsp._aureus_COL|+|14574..15794|int|-|integrase-like 
protein
Length=406

 Score =  281 bits (1053),  Expect = 3e-77, Method: Compositional matrix adjust.
 Identities = 195/408 (48%), Positives = 298/408 (74%), Gaps = 14/408 (3%)

Query  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRleekikekln  60
            MW+EKFKNKN+ETKYRYYEKYKDP T KW+RVSVVLNKN KQSQKEA   L+E+I  KLN
Sbjct  1    MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60

Query  61   nkssselkTLTFHALLDEWLEYHIKTSGFKVTTLDNLKTRIKNIKKNSSQNLLLNKIDTK  120
            +K+++ LK+LTFH   DEW++  IKTSG K TT+    ++++ +KK   +++L+NKI   
Sbjct  61   DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS  120

Query  121  YMQTFINELSN---VYSANQVKRQLGHMKEAIKYAVKFYNYPNEHILNSVTLPKKSKTIE  177
            Y Q  ++E+ N   VY  N  K  L+  K+ + Y+ ++Y+  + ++L+ +TL K+ K+ +
Sbjct  121  YAQQVFDEMDNKGYVYQVN--KDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYD  178

Query  178  DIEKEEAKMYNYLEMEQVIQI-RDFILNDNNMQYRAR----ILVAGAVEVQALTGMRIGE  232
            ++    AK  +YLE++++  I +D+  + ++M+   +    ++VA   E QAL GMRIGE
Sbjct  179  EVK---AKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGE  235

Query  233  LLALQVKDVDLKNKTIDINGTIHRIKCN-AGFGHKDTTKTAGSKRKIAINSRIANVLKKI  291
            +LA+Q  D+D+ NK+++INGTIH++  + +GFG KDTTKT +S R I+++SR  ++LKK 
Sbjct  236  MLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKA  295

Query  292  MLENKKMQQWEPSYVDRGFIFTTCQGNPMQGSRINKRLSSAAESLNINKKVTTHTLRHTH  351
            +LENKK  +W+ +Y++R F+FT  +GNPMQ  R+NK L  AA  + I+K V++H LRH+H
Sbjct  296  ILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSH  355

Query  352  ISLLAEMNISLKAIMKRVGHTDEKTTIKVYTHVTEKMDRELEQKLEKL  399
            ISLL++  +SLKAIM RVGH+D++TT+ +Y+HVTE+MD+++ +KLE++
Sbjct  356  ISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQV  403

25) int in NC_002951


> AF410775|24|G24|15625530|AAL04148.1|Staphylococcus_aureus_subsp._aureus_COL|+|14574..15794|int|-|integrase-like 
protein
Length=406

 Score =  265 bits (990),  Expect = 3e-72, Method: Compositional matrix adjust.
 Identities = 195/408 (48%), Positives = 298/408 (74%), Gaps = 14/408 (3%)

Query  1    MWfekfknknneTKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRleekikekln  60
            MW+EKFKNKN+ETKYRYYEKYKDP T KW+RVSVVLNKN KQSQKEA   L+E+I  KLN
Sbjct  1    MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60

Query  61   nkssselkTLTFHALLDEWLEYHIKTSGFKVTTLDNLKTRIKNIKKNSSQNLLLNKIDTK  120
            +K+++ LK+LTFH   DEW++  IKTSG K TT+    ++++ +KK   +++L+NKI   
Sbjct  61   DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS  120

Query  121  YMQTFINELSN---VYSANQVKRQLGHMKEAIKYAVKFYNYPNEHILNSVTLPKKSKTIE  177
            Y Q  ++E+ N   VY  N  K  L+  K+ + Y+ ++Y+  + ++L+ +TL K+ K+ +
Sbjct  121  YAQQVFDEMDNKGYVYQVN--KDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYD  178

Query  178  DIEKEEAKMYNYLEMEQVIQI-RDFILNDNNMQYRAR----ILVAGAVEVQALTGMRIGE  232
            ++    AK  +YLE++++  I +D+  + ++M+   +    ++VA   E QAL GMRIGE
Sbjct  179  EVK---AKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGE  235

Query  233  LLALQVKDVDLKNKTIDINGTIHRIKCN-AGFGHKDTTKTAGSKRKIAINSRIANVLKKI  291
            +LA+Q  D+D+ NK+++INGTIH++  + +GFG KDTTKT +S R I+++SR  ++LKK 
Sbjct  236  MLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKA  295

Query  292  MLENKKMQQWEPSYVDRGFIFTTCQGNPMQGSRINKRLSSAAESLNINKKVTTHTLRHTH  351
            +LENKK  +W+ +Y++R F+FT  +GNPMQ  R+NK L  AA  + I+K V++H LRH+H
Sbjct  296  ILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSH  355

Query  352  ISLLAEMNISLKAIMKRVGHTDEKTTIKVYTHVTEKMDRELEQKLEKL  399
            ISLL++  +SLKAIM RVGH+D++TT+ +Y+HVTE+MD+++ +KLE++
Sbjct  356  ISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQV  403

26) SaurJH1_0311 in NC_009632


> AF410775|24|G24|15625530|AAL04148.1|Staphylococcus_aureus_subsp._aureus_COL|+|14574..15794|int|-|integrase-like 
protein
Length=406

 Score =  264 bits (985),  Expect = 8e-72, Method: Compositional matrix adjust.
 Identities = 195/408 (48%), Positives = 296/408 (73%), Gaps = 14/408 (3%)

Query  1    MWfekfknknneTKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRleekikekln  60
            MW+EKFKNKN+ETKYRYYEKYKDP T KW+RVSVVLNKN KQSQKEA   L+E+I  KLN
Sbjct  1    MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60

Query  61   nkssselkTLTFHALLDEWLEYHIKTSGFKVTTLDNLKTRIKNIKKNSSQNLLLNKIDTK  120
            +K+++ LK+LTFH   DEW++  IKTSG K TT+    ++++ +KK   +++L+NKI   
Sbjct  61   DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS  120

Query  121  YMQTFINELSN---VYSANQVKRQLGHMKEAIKYAVKFYNYPNEHILNSVTLPKKSKTIE  177
            Y Q  ++E+ N   VY  N  K  L+  K+ + Y+ ++Y+  + ++L+ +TL K+ K+ +
Sbjct  121  YAQQVFDEMDNKGYVYQVN--KDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYD  178

Query  178  DIEKEEAKMYNYLEMEQVIQI-RDFILNDNNMQYRAR----ILVAGAVEVQALTGMRIGE  232
            ++    AK  +YLE++++  I +D+  + ++M+   +    ++VA   E QAL GMRIGE
Sbjct  179  EVK---AKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGE  235

Query  233  LLALQVKDVDLKNKTIAINGTIHRIKCN-AGFGHKDTTKTAGSKRKIAINSRIANVLKKI  291
            +LA+Q  D+D+ NK++ INGTIH++  + +GFG KDTTKT +S R I+++SR  ++LKK 
Sbjct  236  MLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKA  295

Query  292  MLENKKMQQWEPSYVDRGFIFTTCQGNPMQGSRINKRLSSAAESLNINKKVTTHTLRHTH  351
            +LENKK  +W+ +Y++R F+FT  +GNPMQ  R+NK L  AA  + I+K V++H LRH+H
Sbjct  296  ILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSH  355

Query  352  ISLLAEMNISLKAIMKRVGHRDEKTTIKVYTHVTEKMDRELEQKLEKL  399
            ISLL++  +SLKAIM RVGH D++TT+ +Y+HVTE+MD+++ +KLE++
Sbjct  356  ISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQV  403

27) SaurJH9_0304 in NC_009487


> AF410775|24|G24|15625530|AAL04148.1|Staphylococcus_aureus_subsp._aureus_COL|+|14574..15794|int|-|integrase-like 
protein
Length=406

 Score =  264 bits (985),  Expect = 8e-72, Method: Compositional matrix adjust.
 Identities = 195/408 (48%), Positives = 296/408 (73%), Gaps = 14/408 (3%)

Query  1    MWfekfknknneTKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRleekikekln  60
            MW+EKFKNKN+ETKYRYYEKYKDP T KW+RVSVVLNKN KQSQKEA   L+E+I  KLN
Sbjct  1    MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60

Query  61   nkssselkTLTFHALLDEWLEYHIKTSGFKVTTLDNLKTRIKNIKKNSSQNLLLNKIDTK  120
            +K+++ LK+LTFH   DEW++  IKTSG K TT+    ++++ +KK   +++L+NKI   
Sbjct  61   DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS  120

Query  121  YMQTFINELSN---VYSANQVKRQLGHMKEAIKYAVKFYNYPNEHILNSVTLPKKSKTIE  177
            Y Q  ++E+ N   VY  N  K  L+  K+ + Y+ ++Y+  + ++L+ +TL K+ K+ +
Sbjct  121  YAQQVFDEMDNKGYVYQVN--KDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYD  178

Query  178  DIEKEEAKMYNYLEMEQVIQI-RDFILNDNNMQYRAR----ILVAGAVEVQALTGMRIGE  232
            ++    AK  +YLE++++  I +D+  + ++M+   +    ++VA   E QAL GMRIGE
Sbjct  179  EVK---AKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGE  235

Query  233  LLALQVKDVDLKNKTIAINGTIHRIKCN-AGFGHKDTTKTAGSKRKIAINSRIANVLKKI  291
            +LA+Q  D+D+ NK++ INGTIH++  + +GFG KDTTKT +S R I+++SR  ++LKK 
Sbjct  236  MLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKA  295

Query  292  MLENKKMQQWEPSYVDRGFIFTTCQGNPMQGSRINKRLSSAAESLNINKKVTTHTLRHTH  351
            +LENKK  +W+ +Y++R F+FT  +GNPMQ  R+NK L  AA  + I+K V++H LRH+H
Sbjct  296  ILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSH  355

Query  352  ISLLAEMNISLKAIMKRVGHRDEKTTIKVYTHVTEKMDRELEQKLEKL  399
            ISLL++  +SLKAIM RVGH D++TT+ +Y+HVTE+MD+++ +KLE++
Sbjct  356  ISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQV  403

28) int in NC_009641


> AF410775|24|G24|15625530|AAL04148.1|Staphylococcus_aureus_subsp._aureus_COL|+|14574..15794|int|-|integrase-like 
protein
Length=406

 Score =  264 bits (985),  Expect = 8e-72, Method: Compositional matrix adjust.
 Identities = 195/408 (48%), Positives = 296/408 (73%), Gaps = 14/408 (3%)

Query  1    MWfekfknknneTKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRleekikekln  60
            MW+EKFKNKN+ETKYRYYEKYKDP T KW+RVSVVLNKN KQSQKEA   L+E+I  KLN
Sbjct  1    MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60

Query  61   nkssselkTLTFHALLDEWLEYHIKTSGFKVTTLDNLKTRIKNIKKNSSQNLLLNKIDTK  120
            +K+++ LK+LTFH   DEW++  IKTSG K TT+    ++++ +KK   +++L+NKI   
Sbjct  61   DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS  120

Query  121  YMQTFINELSN---VYSANQVKRQLGHMKEAIKYAVKFYNYPNEHILNSVTLPKKSKTIE  177
            Y Q  ++E+ N   VY  N  K  L+  K+ + Y+ ++Y+  + ++L+ +TL K+ K+ +
Sbjct  121  YAQQVFDEMDNKGYVYQVN--KDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYD  178

Query  178  DIEKEEAKMYNYLEMEQVIQI-RDFILNDNNMQYRAR----ILVAGAVEVQALTGMRIGE  232
            ++    AK  +YLE++++  I +D+  + ++M+   +    ++VA   E QAL GMRIGE
Sbjct  179  EVK---AKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGE  235

Query  233  LLALQVKDVDLKNKTIAINGTIHRIKCN-AGFGHKDTTKTAGSKRKIAINSRIANVLKKI  291
            +LA+Q  D+D+ NK++ INGTIH++  + +GFG KDTTKT +S R I+++SR  ++LKK 
Sbjct  236  MLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKA  295

Query  292  MLENKKMQQWEPSYVDRGFIFTTCQGNPMQGSRINKRLSSAAESLNINKKVTTHTLRHTH  351
            +LENKK  +W+ +Y++R F+FT  +GNPMQ  R+NK L  AA  + I+K V++H LRH+H
Sbjct  296  ILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSH  355

Query  352  ISLLAEMNISLKAIMKRVGHRDEKTTIKVYTHVTEKMDRELEQKLEKL  399
            ISLL++  +SLKAIM RVGH D++TT+ +Y+HVTE+MD+++ +KLE++
Sbjct  356  ISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQV  403

29) SATW20_03260 in NC_017331


> AF410775|24|G24|15625530|AAL04148.1|Staphylococcus_aureus_subsp._aureus_COL|+|14574..15794|int|-|integrase-like 
protein
Length=406

 Score =  264 bits (985),  Expect = 8e-72, Method: Compositional matrix adjust.
 Identities = 195/408 (48%), Positives = 296/408 (73%), Gaps = 14/408 (3%)

Query  1    MWfekfknknneTKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRleekikekln  60
            MW+EKFKNKN+ETKYRYYEKYKDP T KW+RVSVVLNKN KQSQKEA   L+E+I  KLN
Sbjct  1    MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60

Query  61   nkssselkTLTFHALLDEWLEYHIKTSGFKVTTLDNLKTRIKNIKKNSSQNLLLNKIDTK  120
            +K+++ LK+LTFH   DEW++  IKTSG K TT+    ++++ +KK   +++L+NKI   
Sbjct  61   DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS  120

Query  121  YMQTFINELSN---VYSANQVKRQLGHMKEAIKYAVKFYNYPNEHILNSVTLPKKSKTIE  177
            Y Q  ++E+ N   VY  N  K  L+  K+ + Y+ ++Y+  + ++L+ +TL K+ K+ +
Sbjct  121  YAQQVFDEMDNKGYVYQVN--KDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYD  178

Query  178  DIEKEEAKMYNYLEMEQVIQI-RDFILNDNNMQYRAR----ILVAGAVEVQALTGMRIGE  232
            ++    AK  +YLE++++  I +D+  + ++M+   +    ++VA   E QAL GMRIGE
Sbjct  179  EVK---AKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGE  235

Query  233  LLALQVKDVDLKNKTIAINGTIHRIKCN-AGFGHKDTTKTAGSKRKIAINSRIANVLKKI  291
            +LA+Q  D+D+ NK++ INGTIH++  + +GFG KDTTKT +S R I+++SR  ++LKK 
Sbjct  236  MLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKA  295

Query  292  MLENKKMQQWEPSYVDRGFIFTTCQGNPMQGSRINKRLSSAAESLNINKKVTTHTLRHTH  351
            +LENKK  +W+ +Y++R F+FT  +GNPMQ  R+NK L  AA  + I+K V++H LRH+H
Sbjct  296  ILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSH  355

Query  352  ISLLAEMNISLKAIMKRVGHRDEKTTIKVYTHVTEKMDRELEQKLEKL  399
            ISLL++  +SLKAIM RVGH D++TT+ +Y+HVTE+MD+++ +KLE++
Sbjct  356  ISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQV  403

30) SaurJH1_1039 in NC_009632


> AF410775|24|G24|15625530|AAL04148.1|Staphylococcus_aureus_subsp._aureus_COL|+|14574..15794|int|-|integrase-like 
protein
Length=406

 Score =  256 bits (957),  Expect = 1e-69, Method: Compositional matrix adjust.
 Identities = 187/408 (46%), Positives = 294/408 (73%), Gaps = 14/408 (3%)

Query  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKDTKQSQKEAMFRleekikekln  60
            MW+EKFKNKN+ETKYRYYEKYKDP T KW+RVSVVLNK+ KQSQKEA   L+E+I  KLN
Sbjct  1    MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60

Query  61   nkssselkTLTFHTLLEEWLEYHIKTSGSKVTTLNNIKTRVKNIkknsskdlllnkldTK  120
            +K+++ LK+LTFH   +EW++  IKTSGSK TT++   ++++ +KK    D+L+NK+   
Sbjct  61   DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS  120

Query  121  YMQMFINKLSS---IYSTNQLRYQLGHMKEAIKYAVKFYDYPNEHLLTGVKLPKKRKTIE  177
            Y Q  ++ + +   +Y  N  +  L+  K+ + Y+ ++Y   + ++L ++ L K+ K+ +
Sbjct  121  YAQQVFDEMDNKGYVYQVN--KDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYD  178

Query  178  DIEKDEAKMYNYLELQQVIQI-RDFILNYNSLHYRTR----ILIAGALEVQALTGMRIGE  232
            ++    AK  +YLEL+++  I +D+  + + +H   +    +++A   E QAL GMRIGE
Sbjct  179  EVK---AKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGE  235

Query  233  LLALQIKDVDLKNKTIDINGTLHRIKCNTG-FGYKDTTKTTGSKRNITINSRTAKVLKKI  291
            +LA+Q  D+D+ NK+++INGT+H++  ++G FG KDTTKT +S R I ++SR+  +LKK 
Sbjct  236  MLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKA  295

Query  292  MLENKKMKQWKPSYIDRGFLFTTSKGNPLQIDKINKLLSLAAESLNINKKVTTHTLRHTH  351
            +LENKK  +W+ +Y++R F+FT  KGNP+Q +++NK+L  AA  + I+K V++H LRH+H
Sbjct  296  ILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSH  355

Query  352  ISLLVEMNISLKAIMKRVGHTDEKTTIKVYTHVTEKMDRELDRKLEKL  399
            ISLL +  +SLKAIM RVGH+D++TT+ +Y+HVTE+MD+++  KLE++
Sbjct  356  ISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQV  403

31) SaurJH9_1020 in NC_009487


> AF410775|24|G24|15625530|AAL04148.1|Staphylococcus_aureus_subsp._aureus_COL|+|14574..15794|int|-|integrase-like 
protein
Length=406

 Score =  256 bits (957),  Expect = 1e-69, Method: Compositional matrix adjust.
 Identities = 187/408 (46%), Positives = 294/408 (73%), Gaps = 14/408 (3%)

Query  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKDTKQSQKEAMFRleekikekln  60
            MW+EKFKNKN+ETKYRYYEKYKDP T KW+RVSVVLNK+ KQSQKEA   L+E+I  KLN
Sbjct  1    MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60

Query  61   nkssselkTLTFHTLLEEWLEYHIKTSGSKVTTLNNIKTRVKNIkknsskdlllnkldTK  120
            +K+++ LK+LTFH   +EW++  IKTSGSK TT++   ++++ +KK    D+L+NK+   
Sbjct  61   DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS  120

Query  121  YMQMFINKLSS---IYSTNQLRYQLGHMKEAIKYAVKFYDYPNEHLLTGVKLPKKRKTIE  177
            Y Q  ++ + +   +Y  N  +  L+  K+ + Y+ ++Y   + ++L ++ L K+ K+ +
Sbjct  121  YAQQVFDEMDNKGYVYQVN--KDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYD  178

Query  178  DIEKDEAKMYNYLELQQVIQI-RDFILNYNSLHYRTR----ILIAGALEVQALTGMRIGE  232
            ++    AK  +YLEL+++  I +D+  + + +H   +    +++A   E QAL GMRIGE
Sbjct  179  EVK---AKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGE  235

Query  233  LLALQIKDVDLKNKTIDINGTLHRIKCNTG-FGYKDTTKTTGSKRNITINSRTAKVLKKI  291
            +LA+Q  D+D+ NK+++INGT+H++  ++G FG KDTTKT +S R I ++SR+  +LKK 
Sbjct  236  MLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKA  295

Query  292  MLENKKMKQWKPSYIDRGFLFTTSKGNPLQIDKINKLLSLAAESLNINKKVTTHTLRHTH  351
            +LENKK  +W+ +Y++R F+FT  KGNP+Q +++NK+L  AA  + I+K V++H LRH+H
Sbjct  296  ILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSH  355

Query  352  ISLLVEMNISLKAIMKRVGHTDEKTTIKVYTHVTEKMDRELDRKLEKL  399
            ISLL +  +SLKAIM RVGH+D++TT+ +Y+HVTE+MD+++  KLE++
Sbjct  356  ISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQV  403

32) SAS0891 in NC_002953


> AF410775|24|G24|15625530|AAL04148.1|Staphylococcus_aureus_subsp._aureus_COL|+|14574..15794|int|-|integrase-like 
protein
Length=406

 Score =  255 bits (951),  Expect = 4e-69, Method: Compositional matrix adjust.
 Identities = 191/408 (47%), Positives = 295/408 (73%), Gaps = 14/408 (3%)

Query  1    MWfekfknknneTKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRleekikekln  60
            MW+EKFKNKN+ETKYRYYEKYKDP T KW+RVSVVLNKN KQSQKEA   L+E+I  KLN
Sbjct  1    MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60

Query  61   nkssselkTLTFHTLLDEWLEYHIKTSGSKVTTLNNIKTRVKNIKKNSAKELLLNKLDTK  120
            +K+++ LK+LTFH   DEW++  IKTSGSK TT++   ++++ +KK    ++L+NK+   
Sbjct  61   DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS  120

Query  121  YMQMFINKLSS---IYSTNQLRYQLGHMKEAIKYAVKFYDYPNEHLLTGVKLPKKRKTIE  177
            Y Q  ++ + +   +Y  N  +  L+  K+ + Y+ ++Y   + ++L ++ L K+ K+ +
Sbjct  121  YAQQVFDEMDNKGYVYQVN--KDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYD  178

Query  178  DIEKDEAKMYNYLELQQVIQI-RDFILNYNSLH--YRTRILIAGAL--EVQALTGMRIGE  232
            ++    AK  +YLEL+++  I +D+  + + +H   + R+ +  AL  E QAL GMRIGE
Sbjct  179  EVK---AKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGE  235

Query  233  LLALQIKDVDLKNKTIDINGTLHRIKCNTG-FGYKDTTKTTGSKRNITINSRTAKVLKKI  291
            +LA+Q  D+D+ NK+++INGT+H++  ++G FG KDTTKT +S R I ++SR+  +LKK 
Sbjct  236  MLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKA  295

Query  292  MLENKKMKQWKPSYIDRGFLFTTSKGNPLQIDKINKLLSLAAESLNINKKVTTHTLRHTH  351
            +LENKK  +W+ +Y++R F+FT  KGNP+Q +++NK+L  AA  + I+K V++H LRH+H
Sbjct  296  ILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSH  355

Query  352  ISLLVEMNVSLKAIMKRVGHTDEKTTIKVYTHVTEKMDRELDRKLEKL  399
            ISLL +  VSLKAIM RVGH+D++TT+ +Y+HVTE+MD+++  KLE++
Sbjct  356  ISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQV  403

33) SABB_00412 in NC_021670


> AF410775|24|G24|15625530|AAL04148.1|Staphylococcus_aureus_subsp._aureus_COL|+|14574..15794|int|-|integrase-like 
protein
Length=406

 Score =  247 bits (922),  Expect = 7e-67, Method: Compositional matrix adjust.
 Identities = 190/409 (47%), Positives = 295/409 (73%), Gaps = 16/409 (3%)

Query  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRleekikekln  60
            MW+EKFKNKN+ETKYRYYEKYKDP T KW+RVSVVLNKN KQSQKEA   L+E+I  KLN
Sbjct  1    MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60

Query  61   nkssselkTLTFHALLDEWLEYHIKTSGSKLTTLnnikirirnikrYSSENLLLNKLDTK  120
            +K+++ LK+LTFH   DEW++  IKTSGSK TT++    ++  +K++  E++L+NK+   
Sbjct  61   DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS  120

Query  121  YMQIFINKLSD---IYSQNQVTRQ-LGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTI  176
            Y Q  ++ + +   +Y   QV ++ L+  K  + Y+ ++Y+  +  +L ++ + KR K+ 
Sbjct  121  YAQQVFDEMDNKGYVY---QVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSY  177

Query  177  EDIEKDESKMYNYLEMNQVLQIRDHILNDNK-----LHKRNRILIASILEVQALTGMRIG  231
            +++    +K  +YLE+N++  I  +I    +     +HKR  +++A + E QAL GMRIG
Sbjct  178  DEVK---AKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIG  234

Query  232  ELQALQEKDIDLLNKTINITGTIHRIKYE-DGFGYKDttktisskrsisinsrtVEIFKK  290
            E+ A+Q+ DID+ NK++NI GTIH++  E +GFG KDTTKT SS R+I+++SR+ EI+KK
Sbjct  235  EMLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKK  294

Query  291  IILENKMLKRWNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHT  350
             ILENK   +WN +Y++R F+FT  KGNP+  +++  +L+ ++K + ++K V++H +RH+
Sbjct  295  AILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHS  354

Query  351  HITLLVEMNVSLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENI  399
            HI+LL +  VSLKAIM RVGH D++TT+ IY+HVTE+MD+++ +KLE++
Sbjct  355  HISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQV  403

34) CA347_1485 in NC_021554


> AF410775|24|G24|15625530|AAL04148.1|Staphylococcus_aureus_subsp._aureus_COL|+|14574..15794|int|-|integrase-like 
protein
Length=406

 Score =  247 bits (922),  Expect = 7e-67, Method: Compositional matrix adjust.
 Identities = 190/409 (47%), Positives = 294/409 (72%), Gaps = 16/409 (3%)

Query  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRleekikekln  60
            MW+EKFKNKN+ETKYRYYEKYKDP T KW+RVSVVLNKN KQSQKEA   L+E+I  KLN
Sbjct  1    MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60

Query  61   nkssselkTLTFHALLDEWLEYHIKTSGSKLTTLnnikirirnikrYSSENLLLNKLDTK  120
            +K+++ LK+LTFH   DEW++  IKTSGSK TT++    ++  +K++  E++L+NK+   
Sbjct  61   DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS  120

Query  121  YMQIFINKLSD---IYSQNQVTRQ-LGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTI  176
            Y Q  ++ + +   +Y   QV ++ L+  K  + Y+ ++Y+  +  +L ++ + KR K+ 
Sbjct  121  YAQQVFDEMDNKGYVY---QVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSY  177

Query  177  EDIEKDESKMYNYLEMNQVLQIRDHILNDNK-----LHKRNRILIASILEVQALTGMRIG  231
            +++    +K  +YLE+N++  I  +I    +     +HKR  +++A + E QAL GMRIG
Sbjct  178  DEVK---AKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIG  234

Query  232  ELQALQEKDIDLLNKTINITGTIHRIKYE-EGFGYKDttktisskrsisinsrtVEIFKK  290
            E+ A+Q+ DID+ NK++NI GTIH++  E  GFG KDTTKT SS R+I+++SR+ EI+KK
Sbjct  235  EMLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKK  294

Query  291  IILENKMLKRWNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHT  350
             ILENK   +WN +Y++R F+FT  KGNP+  +++  +L+ ++K + ++K V++H +RH+
Sbjct  295  AILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHS  354

Query  351  HITLLVEMNVSLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENI  399
            HI+LL +  VSLKAIM RVGH D++TT+ IY+HVTE+MD+++ +KLE++
Sbjct  355  HISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQV  403

35) SAEMRSA15_14090 in NC_017763


> AF410775|24|G24|15625530|AAL04148.1|Staphylococcus_aureus_subsp._aureus_COL|+|14574..15794|int|-|integrase-like 
protein
Length=406

 Score =  247 bits (922),  Expect = 7e-67, Method: Compositional matrix adjust.
 Identities = 190/409 (47%), Positives = 294/409 (72%), Gaps = 16/409 (3%)

Query  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRleekikekln  60
            MW+EKFKNKN+ETKYRYYEKYKDP T KW+RVSVVLNKN KQSQKEA   L+E+I  KLN
Sbjct  1    MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60

Query  61   nkssselkTLTFHALLDEWLEYHIKTSGSKLTTLnnikirirnikrYSSENLLLNKLDTK  120
            +K+++ LK+LTFH   DEW++  IKTSGSK TT++    ++  +K++  E++L+NK+   
Sbjct  61   DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS  120

Query  121  YMQIFINKLSD---IYSQNQVTRQ-LGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTI  176
            Y Q  ++ + +   +Y   QV ++ L+  K  + Y+ ++Y+  +  +L ++ + KR K+ 
Sbjct  121  YAQQVFDEMDNKGYVY---QVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSY  177

Query  177  EDIEKDESKMYNYLEMNQVLQIRDHILNDNK-----LHKRNRILIASILEVQALTGMRIG  231
            +++    +K  +YLE+N++  I  +I    +     +HKR  +++A + E QAL GMRIG
Sbjct  178  DEVK---AKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIG  234

Query  232  ELQALQEKDIDLLNKTINITGTIHRIKYE-EGFGYKDttktisskrsisinsrtVEIFKK  290
            E+ A+Q+ DID+ NK++NI GTIH++  E  GFG KDTTKT SS R+I+++SR+ EI+KK
Sbjct  235  EMLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKK  294

Query  291  IILENKMLKRWNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHT  350
             ILENK   +WN +Y++R F+FT  KGNP+  +++  +L+ ++K + ++K V++H +RH+
Sbjct  295  AILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHS  354

Query  351  HITLLVEMNVSLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENI  399
            HI+LL +  VSLKAIM RVGH D++TT+ IY+HVTE+MD+++ +KLE++
Sbjct  355  HISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQV  403

36) SAA6159_01417 in NC_017338


> AF410775|24|G24|15625530|AAL04148.1|Staphylococcus_aureus_subsp._aureus_COL|+|14574..15794|int|-|integrase-like 
protein
Length=406

 Score =  247 bits (922),  Expect = 7e-67, Method: Compositional matrix adjust.
 Identities = 190/409 (47%), Positives = 294/409 (72%), Gaps = 16/409 (3%)

Query  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRleekikekln  60
            MW+EKFKNKN+ETKYRYYEKYKDP T KW+RVSVVLNKN KQSQKEA   L+E+I  KLN
Sbjct  1    MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60

Query  61   nkssselkTLTFHALLDEWLEYHIKTSGSKLTTLnnikirirnikrYSSENLLLNKLDTK  120
            +K+++ LK+LTFH   DEW++  IKTSGSK TT++    ++  +K++  E++L+NK+   
Sbjct  61   DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS  120

Query  121  YMQIFINKLSD---IYSQNQVTRQ-LGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTI  176
            Y Q  ++ + +   +Y   QV ++ L+  K  + Y+ ++Y+  +  +L ++ + KR K+ 
Sbjct  121  YAQQVFDEMDNKGYVY---QVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSY  177

Query  177  EDIEKDESKMYNYLEMNQVLQIRDHILNDNK-----LHKRNRILIASILEVQALTGMRIG  231
            +++    +K  +YLE+N++  I  +I    +     +HKR  +++A + E QAL GMRIG
Sbjct  178  DEVK---AKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIG  234

Query  232  ELQALQEKDIDLLNKTINITGTIHRIKYE-EGFGYKDttktisskrsisinsrtVEIFKK  290
            E+ A+Q+ DID+ NK++NI GTIH++  E  GFG KDTTKT SS R+I+++SR+ EI+KK
Sbjct  235  EMLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKK  294

Query  291  IILENKMLKRWNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHT  350
             ILENK   +WN +Y++R F+FT  KGNP+  +++  +L+ ++K + ++K V++H +RH+
Sbjct  295  AILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHS  354

Query  351  HITLLVEMNVSLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENI  399
            HI+LL +  VSLKAIM RVGH D++TT+ IY+HVTE+MD+++ +KLE++
Sbjct  355  HISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQV  403

37) M013TW_1502 in NC_016928


> AF410775|24|G24|15625530|AAL04148.1|Staphylococcus_aureus_subsp._aureus_COL|+|14574..15794|int|-|integrase-like 
protein
Length=406

 Score =  247 bits (922),  Expect = 7e-67, Method: Compositional matrix adjust.
 Identities = 190/409 (47%), Positives = 294/409 (72%), Gaps = 16/409 (3%)

Query  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRleekikekln  60
            MW+EKFKNKN+ETKYRYYEKYKDP T KW+RVSVVLNKN KQSQKEA   L+E+I  KLN
Sbjct  1    MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60

Query  61   nkssselkTLTFHALLDEWLEYHIKTSGSKLTTLnnikirirnikrYSSENLLLNKLDTK  120
            +K+++ LK+LTFH   DEW++  IKTSGSK TT++    ++  +K++  E++L+NK+   
Sbjct  61   DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS  120

Query  121  YMQIFINKLSD---IYSQNQVTRQ-LGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTI  176
            Y Q  ++ + +   +Y   QV ++ L+  K  + Y+ ++Y+  +  +L ++ + KR K+ 
Sbjct  121  YAQQVFDEMDNKGYVY---QVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSY  177

Query  177  EDIEKDESKMYNYLEMNQVLQIRDHILNDNK-----LHKRNRILIASILEVQALTGMRIG  231
            +++    +K  +YLE+N++  I  +I    +     +HKR  +++A + E QAL GMRIG
Sbjct  178  DEVK---AKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIG  234

Query  232  ELQALQEKDIDLLNKTINITGTIHRIKYE-EGFGYKDttktisskrsisinsrtVEIFKK  290
            E+ A+Q+ DID+ NK++NI GTIH++  E  GFG KDTTKT SS R+I+++SR+ EI+KK
Sbjct  235  EMLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKK  294

Query  291  IILENKMLKRWNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHT  350
             ILENK   +WN +Y++R F+FT  KGNP+  +++  +L+ ++K + ++K V++H +RH+
Sbjct  295  AILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHS  354

Query  351  HITLLVEMNVSLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENI  399
            HI+LL +  VSLKAIM RVGH D++TT+ IY+HVTE+MD+++ +KLE++
Sbjct  355  HISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQV  403

38) BN843_14930 in NC_021059


> AF410775|24|G24|15625530|AAL04148.1|Staphylococcus_aureus_subsp._aureus_COL|+|14574..15794|int|-|integrase-like 
protein
Length=406

 Score =  247 bits (922),  Expect = 7e-67, Method: Compositional matrix adjust.
 Identities = 190/409 (47%), Positives = 294/409 (72%), Gaps = 16/409 (3%)

Query  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRleekikekln  60
            MW+EKFKNKN+ETKYRYYEKYKDP T KW+RVSVVLNKN KQSQKEA   L+E+I  KLN
Sbjct  1    MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60

Query  61   nkssselkTLTFHALLDEWLEYHIKTSGSKLTTLnnikirirnikrYSSENLLLNKLDTK  120
            +K+++ LK+LTFH   DEW++  IKTSGSK TT++    ++  +K++  E++L+NK+   
Sbjct  61   DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS  120

Query  121  YMQIFINKLSD---IYSQNQVTRQ-LGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTI  176
            Y Q  ++ + +   +Y   QV ++ L+  K  + Y+ ++Y+  +  +L ++ + KR K+ 
Sbjct  121  YAQQVFDEMDNKGYVY---QVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSY  177

Query  177  EDIEKDESKMYNYLEMNQVLQIRDHILNDNK-----LHKRNRILIASILEVQALTGMRIG  231
            +++    +K  +YLE+N++  I  +I    +     +HKR  +++A + E QAL GMRIG
Sbjct  178  DEVK---AKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIG  234

Query  232  ELQALQEKDIDLLNKTINITGTIHRIKYE-EGFGYKDttktisskrsisinsrtVEIFKK  290
            E+ A+Q+ DID+ NK++NI GTIH++  E  GFG KDTTKT SS R+I+++SR+ EI+KK
Sbjct  235  EMLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKK  294

Query  291  IILENKMLKRWNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHT  350
             ILENK   +WN +Y++R F+FT  KGNP+  +++  +L+ ++K + ++K V++H +RH+
Sbjct  295  AILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHS  354

Query  351  HITLLVEMNVSLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENI  399
            HI+LL +  VSLKAIM RVGH D++TT+ IY+HVTE+MD+++ +KLE++
Sbjct  355  HISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQV  403

39) SA957_1443 in NC_022442


> AF410775|24|G24|15625530|AAL04148.1|Staphylococcus_aureus_subsp._aureus_COL|+|14574..15794|int|-|integrase-like 
protein
Length=406

 Score =  247 bits (922),  Expect = 7e-67, Method: Compositional matrix adjust.
 Identities = 190/409 (47%), Positives = 294/409 (72%), Gaps = 16/409 (3%)

Query  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRleekikekln  60
            MW+EKFKNKN+ETKYRYYEKYKDP T KW+RVSVVLNKN KQSQKEA   L+E+I  KLN
Sbjct  1    MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60

Query  61   nkssselkTLTFHALLDEWLEYHIKTSGSKLTTLnnikirirnikrYSSENLLLNKLDTK  120
            +K+++ LK+LTFH   DEW++  IKTSGSK TT++    ++  +K++  E++L+NK+   
Sbjct  61   DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS  120

Query  121  YMQIFINKLSD---IYSQNQVTRQ-LGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTI  176
            Y Q  ++ + +   +Y   QV ++ L+  K  + Y+ ++Y+  +  +L ++ + KR K+ 
Sbjct  121  YAQQVFDEMDNKGYVY---QVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSY  177

Query  177  EDIEKDESKMYNYLEMNQVLQIRDHILNDNK-----LHKRNRILIASILEVQALTGMRIG  231
            +++    +K  +YLE+N++  I  +I    +     +HKR  +++A + E QAL GMRIG
Sbjct  178  DEVK---AKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIG  234

Query  232  ELQALQEKDIDLLNKTINITGTIHRIKYE-EGFGYKDttktisskrsisinsrtVEIFKK  290
            E+ A+Q+ DID+ NK++NI GTIH++  E  GFG KDTTKT SS R+I+++SR+ EI+KK
Sbjct  235  EMLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKK  294

Query  291  IILENKMLKRWNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHT  350
             ILENK   +WN +Y++R F+FT  KGNP+  +++  +L+ ++K + ++K V++H +RH+
Sbjct  295  AILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHS  354

Query  351  HITLLVEMNVSLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENI  399
            HI+LL +  VSLKAIM RVGH D++TT+ IY+HVTE+MD+++ +KLE++
Sbjct  355  HISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQV  403

40) SAUSA300_1438 in NC_007793


> AF410775|24|G24|15625530|AAL04148.1|Staphylococcus_aureus_subsp._aureus_COL|+|14574..15794|int|-|integrase-like 
protein
Length=406

 Score =  247 bits (922),  Expect = 7e-67, Method: Compositional matrix adjust.
 Identities = 190/409 (47%), Positives = 294/409 (72%), Gaps = 16/409 (3%)

Query  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRleekikekln  60
            MW+EKFKNKN+ETKYRYYEKYKDP T KW+RVSVVLNKN KQSQKEA   L+E+I  KLN
Sbjct  1    MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60

Query  61   nkssselkTLTFHALLDEWLEYHIKTSGSKLTTLnnikirirnikrYSSENLLLNKLDTK  120
            +K+++ LK+LTFH   DEW++  IKTSGSK TT++    ++  +K++  E++L+NK+   
Sbjct  61   DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS  120

Query  121  YMQIFINKLSD---IYSQNQVTRQ-LGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTI  176
            Y Q  ++ + +   +Y   QV ++ L+  K  + Y+ ++Y+  +  +L ++ + KR K+ 
Sbjct  121  YAQQVFDEMDNKGYVY---QVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSY  177

Query  177  EDIEKDESKMYNYLEMNQVLQIRDHILNDNK-----LHKRNRILIASILEVQALTGMRIG  231
            +++    +K  +YLE+N++  I  +I    +     +HKR  +++A + E QAL GMRIG
Sbjct  178  DEVK---AKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIG  234

Query  232  ELQALQEKDIDLLNKTINITGTIHRIKYE-EGFGYKDttktisskrsisinsrtVEIFKK  290
            E+ A+Q+ DID+ NK++NI GTIH++  E  GFG KDTTKT SS R+I+++SR+ EI+KK
Sbjct  235  EMLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKK  294

Query  291  IILENKMLKRWNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHT  350
             ILENK   +WN +Y++R F+FT  KGNP+  +++  +L+ ++K + ++K V++H +RH+
Sbjct  295  AILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHS  354

Query  351  HITLLVEMNVSLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENI  399
            HI+LL +  VSLKAIM RVGH D++TT+ IY+HVTE+MD+++ +KLE++
Sbjct  355  HISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQV  403

41) USA300HOU_1490 in NC_010079


> AF410775|24|G24|15625530|AAL04148.1|Staphylococcus_aureus_subsp._aureus_COL|+|14574..15794|int|-|integrase-like 
protein
Length=406

 Score =  247 bits (922),  Expect = 7e-67, Method: Compositional matrix adjust.
 Identities = 190/409 (47%), Positives = 294/409 (72%), Gaps = 16/409 (3%)

Query  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRleekikekln  60
            MW+EKFKNKN+ETKYRYYEKYKDP T KW+RVSVVLNKN KQSQKEA   L+E+I  KLN
Sbjct  1    MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60

Query  61   nkssselkTLTFHALLDEWLEYHIKTSGSKLTTLnnikirirnikrYSSENLLLNKLDTK  120
            +K+++ LK+LTFH   DEW++  IKTSGSK TT++    ++  +K++  E++L+NK+   
Sbjct  61   DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS  120

Query  121  YMQIFINKLSD---IYSQNQVTRQ-LGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTI  176
            Y Q  ++ + +   +Y   QV ++ L+  K  + Y+ ++Y+  +  +L ++ + KR K+ 
Sbjct  121  YAQQVFDEMDNKGYVY---QVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSY  177

Query  177  EDIEKDESKMYNYLEMNQVLQIRDHILNDNK-----LHKRNRILIASILEVQALTGMRIG  231
            +++    +K  +YLE+N++  I  +I    +     +HKR  +++A + E QAL GMRIG
Sbjct  178  DEVK---AKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIG  234

Query  232  ELQALQEKDIDLLNKTINITGTIHRIKYE-EGFGYKDttktisskrsisinsrtVEIFKK  290
            E+ A+Q+ DID+ NK++NI GTIH++  E  GFG KDTTKT SS R+I+++SR+ EI+KK
Sbjct  235  EMLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKK  294

Query  291  IILENKMLKRWNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHT  350
             ILENK   +WN +Y++R F+FT  KGNP+  +++  +L+ ++K + ++K V++H +RH+
Sbjct  295  AILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHS  354

Query  351  HITLLVEMNVSLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENI  399
            HI+LL +  VSLKAIM RVGH D++TT+ IY+HVTE+MD+++ +KLE++
Sbjct  355  HISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQV  403

42) int2 in NC_017342


> AF410775|24|G24|15625530|AAL04148.1|Staphylococcus_aureus_subsp._aureus_COL|+|14574..15794|int|-|integrase-like 
protein
Length=406

 Score =  246 bits (920),  Expect = 1e-66, Method: Compositional matrix adjust.
 Identities = 190/409 (47%), Positives = 295/409 (73%), Gaps = 16/409 (3%)

Query  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRleekikekln  60
            MW+EKFKNKN+ETKYRYYEKYKDP T KW+RVSVVLNKN KQSQKEA   L+E+I  KLN
Sbjct  1    MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60

Query  61   nkssselkTLTFHALLDEWLEYHIKTSGSKLTTLnnikiriknikrYCSENLLLNKLDTK  120
            +K+++ LK+LTFH   DEW++  IKTSGSK TT++    +++ +K++  E++L+NK+   
Sbjct  61   DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS  120

Query  121  YMQIFINKLSD---IYSQNQVTRQ-LGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTI  176
            Y Q  ++ + +   +Y   QV ++ L+  K  + Y+ ++Y+  +  +L ++ + KR K+ 
Sbjct  121  YAQQVFDEMDNKGYVY---QVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSY  177

Query  177  EDIEKDESKMYNYLEMNQVLQIRDHILNDNK-----LHKRNRILIASILEVQALTGMRIG  231
            +++    +K  +YLE+N++  I  +I    +     +HKR  +++A + E QAL GMRIG
Sbjct  178  DEVK---AKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIG  234

Query  232  ELQALQEKDIDLLNKTINITGTIHRIKYE-EGFGYKDttktisskrsisinsrtVEIFKK  290
            E+ A+Q+ DID+ NK++NI GTIH++  E  GFG KDTTKT SS R+I+++SR+ EI+KK
Sbjct  235  EMLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKK  294

Query  291  IILENKMLKRWNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHT  350
             ILENK   +WN +Y++R F+FT  KGNP+  +++  +L+ ++K + ++K V++H +RH+
Sbjct  295  AILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHS  354

Query  351  HITLLVEMNVSLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENI  399
            HI+LL +  VSLKAIM RVGH D++TT+ IY+HVTE+MD+++ +KLE++
Sbjct  355  HISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQV  403

43) SAOUHSC_01582 in NC_007795


> AF410775|24|G24|15625530|AAL04148.1|Staphylococcus_aureus_subsp._aureus_COL|+|14574..15794|int|-|integrase-like 
protein
Length=406

 Score =  245 bits (913),  Expect = 4e-66, Method: Compositional matrix adjust.
 Identities = 189/409 (47%), Positives = 295/409 (73%), Gaps = 16/409 (3%)

Query  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRleekikekln  60
            MW+EKFKNKN+ETKYRYYEKYKDP T KW+RVSVVLNKN KQSQKEA   L+E+I  KLN
Sbjct  1    MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60

Query  61   nkssselkTLTFHALLDEWLEYHIKTSGSKLTTLnnikiriknikrYCSENLLLNKLDTK  120
            +K+++ LK+LTFH   DEW++  IKTSGSK TT++    +++ +K++  E++L+NK+   
Sbjct  61   DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS  120

Query  121  YMQIFINKLSD---IYSQNQVTRQ-LGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTI  176
            Y Q  ++ + +   +Y   QV ++ L+  K  + Y+ ++Y+  +  +L ++ + KR K+ 
Sbjct  121  YAQQVFDEMDNKGYVY---QVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSY  177

Query  177  EDIEKDESKMYNYLEMNQVLQIRDHILNDNK-----LQKRNRILIASILEVQALTGMRIG  231
            +++    +K  +YLE+N++  I  +I    +     ++KR  +++A + E QAL GMRIG
Sbjct  178  DEVK---AKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIG  234

Query  232  ELQALQEKDIDLLNKTINITGTIHRIKYEKG-FGYKDttktisskrsisinsrtVEIFKK  290
            E+ A+Q+ DID+ NK++NI GTIH++  E G FG KDTTKT SS R+I+++SR+ EI+KK
Sbjct  235  EMLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKK  294

Query  291  IILENKMLKRWNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHT  350
             ILENK   +WN +Y++R F+FT  KGNP+  +++  +L+ ++K + ++K V++H +RH+
Sbjct  295  AILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHS  354

Query  351  HITLLVEMNVSLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENI  399
            HI+LL +  VSLKAIM RVGH D++TT+ IY+HVTE+MD+++ +KLE++
Sbjct  355  HISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQV  403

44) SAPIG1554 in NC_017333


> AF410775|24|G24|15625530|AAL04148.1|Staphylococcus_aureus_subsp._aureus_COL|+|14574..15794|int|-|integrase-like 
protein
Length=406

 Score =  233 bits (870),  Expect = 9e-63, Method: Compositional matrix adjust.
 Identities = 184/402 (46%), Positives = 287/402 (72%), Gaps = 16/402 (3%)

Query  5    NKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRleekikeklnnksssel  64
            NKN+ETKYRYYEKYKDP T KW+RVSVVLNKN KQSQKEA   L+E+I  KLN+K+++ L
Sbjct  8    NKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLNDKTPTTL  67

Query  65   kTLTFHALLDEWLEYHIKTSGSKLTTLnnikirirnikrYSSENLLLNKLDTKYMQIFIN  124
            K+LTFH   DEW++  IKTSGSK TT++    ++  +K++  E++L+NK+   Y Q  ++
Sbjct  68   KSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLSYAQQVFD  127

Query  125  KLSD---IYSQNQVTRQ-LGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIEKDE  180
             + +   +Y   QV ++ L+  K  + Y+ ++Y+  +  +L ++ + KR K+ +++    
Sbjct  128  EMDNKGYVY---QVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEVK---  181

Query  181  SKMYNYLEMNQVLQIRDHILNDNK-----LHKRNRILIASILEVQALTGMRIGELQALQE  235
            +K  +YLE+N++  I  +I    +     +HKR  +++A + E QAL GMRIGE+ A+Q+
Sbjct  182  AKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQN  241

Query  236  KDIDLLNKTINITGTIHRIKYE-EGFGYKDttktisskrsisinsrtVEIFKKIILENKM  294
             DID+ NK++NI GTIH++  E  GFG KDTTKT SS R+I+++SR+ EI+KK ILENK 
Sbjct  242  EDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKK  301

Query  295  LKRWNSSYVDRGFIFTTKKGNPLCNNQITGVLKKTTKALNMNKKVTTHTFRHTHITLLVE  354
              +WN +Y++R F+FT  KGNP+  +++  +L+ ++K + ++K V++H +RH+HI+LL +
Sbjct  302  DSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLSQ  361

Query  355  MNVSLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENI  396
              VSLKAIM RVGH D++TT+ IY+HVTE+MD+++ +KLE++
Sbjct  362  QGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQV  403

45) SAAG_01400 in NC_022113


> AF410775|24|G24|15625530|AAL04148.1|Staphylococcus_aureus_subsp._aureus_COL|+|14574..15794|int|-|integrase-like 
protein
Length=406

 Score =  231 bits (860),  Expect = 6e-62, Method: Compositional matrix adjust.
 Identities = 190/409 (47%), Positives = 294/409 (72%), Gaps = 16/409 (3%)

Query  1    MWfekfknknneTKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRleekikekln  60
            MW+EKFKNKN+ETKYRYYEKYKDP T KW+RVSVVLNKN KQSQKEA   L+E+I  KLN
Sbjct  1    MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60

Query  61   nkssselkTLTFHALLDEWLEYHIKTSGSKLTTLnnikirirnikrYSSENLLLNKLDTK  120
            +K+++ LK+LTFH   DEW++  IKTSGSK TT++    ++  +K++  E++L+NK+   
Sbjct  61   DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS  120

Query  121  YMQIFINKLSD---IYSQNQVTRQ-LGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTI  176
            Y Q  ++ + +   +Y   QV ++ L+  K  + Y+ ++Y+  +  +L ++ + KR K+ 
Sbjct  121  YAQQVFDEMDNKGYVY---QVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSY  177

Query  177  EDIEKDESKMYNYLEMNQVLQIRDHILNDNK-----LHKRNRILIASILEVQALTGMRIG  231
            +++    +K  +YLE+N++  I  +I    +     +HKR  +++A + E QAL GMRIG
Sbjct  178  DEVK---AKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIG  234

Query  232  ELQALQEKDIDLLNKTINITGTIHRIKYE-EGFGYKDttktisskrsisinsrtVEIFKK  290
            E+ A+Q+ DID+ NK++NI GTIH++  E  GFG KDTTKT SS R+I+++SR+ EI+KK
Sbjct  235  EMLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKK  294

Query  291  IILENKMLKRWNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHT  350
             ILENK   +WN +Y++R F+FT  KGNP+  +++  +L+ ++K + ++K V++H +RH+
Sbjct  295  AILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHS  354

Query  351  HITLLVEMNVSLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENI  399
            HI+LL +  VSLKAIM RVGH D++TT+ IY+HVTE+MD+++ +KLE++
Sbjct  355  HISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQV  403

46) SAR1562 in NC_002952


> AF410775|24|G24|15625530|AAL04148.1|Staphylococcus_aureus_subsp._aureus_COL|+|14574..15794|int|-|integrase-like 
protein
Length=406

 Score =  231 bits (860),  Expect = 6e-62, Method: Compositional matrix adjust.
 Identities = 190/409 (47%), Positives = 294/409 (72%), Gaps = 16/409 (3%)

Query  1    MWfekfknknneTKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRleekikekln  60
            MW+EKFKNKN+ETKYRYYEKYKDP T KW+RVSVVLNKN KQSQKEA   L+E+I  KLN
Sbjct  1    MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60

Query  61   nkssselkTLTFHALLDEWLEYHIKTSGSKLTTLnnikirirnikrYSSENLLLNKLDTK  120
            +K+++ LK+LTFH   DEW++  IKTSGSK TT++    ++  +K++  E++L+NK+   
Sbjct  61   DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS  120

Query  121  YMQIFINKLSD---IYSQNQVTRQ-LGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTI  176
            Y Q  ++ + +   +Y   QV ++ L+  K  + Y+ ++Y+  +  +L ++ + KR K+ 
Sbjct  121  YAQQVFDEMDNKGYVY---QVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSY  177

Query  177  EDIEKDESKMYNYLEMNQVLQIRDHILNDNK-----LHKRNRILIASILEVQALTGMRIG  231
            +++    +K  +YLE+N++  I  +I    +     +HKR  +++A + E QAL GMRIG
Sbjct  178  DEVK---AKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIG  234

Query  232  ELQALQEKDIDLLNKTINITGTIHRIKYE-EGFGYKDttktisskrsisinsrtVEIFKK  290
            E+ A+Q+ DID+ NK++NI GTIH++  E  GFG KDTTKT SS R+I+++SR+ EI+KK
Sbjct  235  EMLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKK  294

Query  291  IILENKMLKRWNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHT  350
             ILENK   +WN +Y++R F+FT  KGNP+  +++  +L+ ++K + ++K V++H +RH+
Sbjct  295  AILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHS  354

Query  351  HITLLVEMNVSLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENI  399
            HI+LL +  VSLKAIM RVGH D++TT+ IY+HVTE+MD+++ +KLE++
Sbjct  355  HISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQV  403

47) int in NC_003923


> AF410775|24|G24|15625530|AAL04148.1|Staphylococcus_aureus_subsp._aureus_COL|+|14574..15794|int|-|integrase-like 
protein
Length=406

 Score =  231 bits (860),  Expect = 6e-62, Method: Compositional matrix adjust.
 Identities = 190/409 (47%), Positives = 294/409 (72%), Gaps = 16/409 (3%)

Query  1    MWfekfknknneTKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRleekikekln  60
            MW+EKFKNKN+ETKYRYYEKYKDP T KW+RVSVVLNKN KQSQKEA   L+E+I  KLN
Sbjct  1    MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60

Query  61   nkssselkTLTFHALLDEWLEYHIKTSGSKLTTLnnikirirnikrYSSENLLLNKLDTK  120
            +K+++ LK+LTFH   DEW++  IKTSGSK TT++    ++  +K++  E++L+NK+   
Sbjct  61   DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS  120

Query  121  YMQIFINKLSD---IYSQNQVTRQ-LGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTI  176
            Y Q  ++ + +   +Y   QV ++ L+  K  + Y+ ++Y+  +  +L ++ + KR K+ 
Sbjct  121  YAQQVFDEMDNKGYVY---QVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSY  177

Query  177  EDIEKDESKMYNYLEMNQVLQIRDHILNDNK-----LHKRNRILIASILEVQALTGMRIG  231
            +++    +K  +YLE+N++  I  +I    +     +HKR  +++A + E QAL GMRIG
Sbjct  178  DEVK---AKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIG  234

Query  232  ELQALQEKDIDLLNKTINITGTIHRIKYE-EGFGYKDttktisskrsisinsrtVEIFKK  290
            E+ A+Q+ DID+ NK++NI GTIH++  E  GFG KDTTKT SS R+I+++SR+ EI+KK
Sbjct  235  EMLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKK  294

Query  291  IILENKMLKRWNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHT  350
             ILENK   +WN +Y++R F+FT  KGNP+  +++  +L+ ++K + ++K V++H +RH+
Sbjct  295  AILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHS  354

Query  351  HITLLVEMNVSLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENI  399
            HI+LL +  VSLKAIM RVGH D++TT+ IY+HVTE+MD+++ +KLE++
Sbjct  355  HISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQV  403