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Homologs of unnamed gene of FJ544922

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) ccrC
( YP_006708808.1 )

Recombinase CcrC

NC_018608
(Staphylococcus aureus 08BA02176)

0.0

100

2) M013TW_0056
( YP_005296526.1 )

cassette chromosome recombinase B

NC_016928
(Staphylococcus aureus M013)

0.0

100

3) SA957_0051
( YP_008584149.1 )

staphylococcal casette chromosome site specific recombinase CcrC

NC_022442
(Staphylococcus aureus SA957)

0.0

100

4) SAPIG0050
( YP_005732860.1 )

cassette chromosome recombinase C

NC_017333
(Staphylococcus aureus ST398)

0.0

5) ccrC
( YP_008167200.1 )

cassette chromosome recombinase C

NC_021670
(Staphylococcus aureus Bmb9393)

0.0

6) ccrC
( YP_251971.1 )

casette chromosome site specific recombinase CcrC

NC_007168
(Staphylococcus haemolyticus JCSC1435)

0.0

7) SAT0131_02876
( YP_005753914.1 )

Cassette chromosome recombinase C

NC_017347
(Staphylococcus aureus T0131)

0.0

8) M013TW_0038
( YP_005296509.1 )

cassette chromosome recombinase B

NC_016928
(Staphylococcus aureus M013)

0.0

9) ccrC
( YP_008584131.1 )

staphylococcal casette chromosome site specific recombinase CcrC

NC_022442
(Staphylococcus aureus SA957)

0.0

10) SAPIG0035
( YP_005732845.1 )

cassette chromosome recombinase C7

NC_017333
(Staphylococcus aureus ST398)

0.0

11) SSP0046
( YP_300136.1 )

cassette chromosome recombinase C

NC_007350
(Staphylococcus saprophyticus ATCC 15305)

0.0

12) BLi04323
( YP_006715586.1 )

phage resolvase

NC_006322
(Bacillus licheniformis DSM 13)

2e-60

13) spoIVCA
( YP_081392.1 )

site-specific DNA recombinase

NC_006270
(Bacillus licheniformis DSM 13)

2e-60

• Sequence Alignments

1) ccrC in NC_018608


> FJ544922|23|G23|221148483|ACL99844.1|Staphylococcus_pseudintermedius_strain_06-3228|+|23718..25397|-|-|cassette 
chromosome 
recombinase C2
Length=559

 Score =  909 bits (3442),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 559/559 (100%), Positives = 559/559 (100%), Gaps = 0/559 (0%)

Query  1    MKGKIALYSRVSTSEQSEHGYSEKEQEQLLIKEVMKNFPGYDYETYTDSGISGKNIEGRP  60
            MKGKIALYSRVSTSEQSEHGYSEKEQEQLLIKEVMKNFPGYDYETYTDSGISGKNIEGRP
Sbjct  1    MKGKIALYSRVSTSEQSEHGYSEKEQEQLLIKEVMKNFPGYDYETYTDSGISGKNIEGRP  60

Query  61   AMKRLLQDVKDNKIEMVLSWKLNRISRSMRDVFNIIHEFKEHDVGYKSISENIDTSNASG  120
            AMKRLLQDVKDNKIEMVLSWKLNRISRSMRDVFNIIHEFKEHDVGYKSISENIDTSNASG
Sbjct  61   AMKRLLQDVKDNKIEMVLSWKLNRISRSMRDVFNIIHEFKEHDVGYKSISENIDTSNASG  120

Query  121  EVLVTMFGLIGSIERQTLISNVKLSMNAKARSGEAITGRVLGYKLSLNPLTQKNDLVIDE  180
            EVLVTMFGLIGSIERQTLISNVKLSMNAKARSGEAITGRVLGYKLSLNPLTQKNDLVIDE
Sbjct  121  EVLVTMFGLIGSIERQTLISNVKLSMNAKARSGEAITGRVLGYKLSLNPLTQKNDLVIDE  180

Query  181  NEAHIVREIFDLYLNHNKGFKAITTILNQKGYRTINQKPFSVFGVKYILNNPVYKGYVRF  240
            NEAHIVREIFDLYLNHNKGFKAITTILNQKGYRTINQKPFSVFGVKYILNNPVYKGYVRF
Sbjct  181  NEAHIVREIFDLYLNHNKGFKAITTILNQKGYRTINQKPFSVFGVKYILNNPVYKGYVRF  240

Query  241  NNHQNWAVQRRSGKSDKNDVILVKGKHEAIISEDVFDQVHEKLASKSFKPGRPIGGDFYL  300
            NNHQNWAVQRRSGKSDKNDVILVKGKHEAIISEDVFDQVHEKLASKSFKPGRPIGGDFYL
Sbjct  241  NNHQNWAVQRRSGKSDKNDVILVKGKHEAIISEDVFDQVHEKLASKSFKPGRPIGGDFYL  300

Query  301  RGLIKCPECGNNMVCRRTYYKTKKSKERTIKRYYICSLFNRSGSSACHSNAINAEVVERV  360
            RGLIKCPECGNNMVCRRTYYKTKKSKERTIKRYYICSLFNRSGSSACHSNAINAEVVERV
Sbjct  301  RGLIKCPECGNNMVCRRTYYKTKKSKERTIKRYYICSLFNRSGSSACHSNAINAEVVERV  360

Query  361  INVHLNRILSQPNVIKQIASSVIEELKQKHSKQTEIKYDIDSLEKQKAKVKTQQERLLEL  420
            INVHLNRILSQPNVIKQIASSVIEELKQKHSKQTEIKYDIDSLEKQKAKVKTQQERLLEL
Sbjct  361  INVHLNRILSQPNVIKQIASSVIEELKQKHSKQTEIKYDIDSLEKQKAKVKTQQERLLEL  420

Query  421  FLDDEMDSEMLKAKQSEMNQQLEVLDQQIKEAKQANQSQDDIPNFDKLKARLILMITRFS  480
            FLDDEMDSEMLKAKQSEMNQQLEVLDQQIKEAKQANQSQDDIPNFDKLKARLILMITRFS
Sbjct  421  FLDDEMDSEMLKAKQSEMNQQLEVLDQQIKEAKQANQSQDDIPNFDKLKARLILMITRFS  480

Query  481  VYLRKATPEAKNQLMKMLIDSIEITTDKQVKLVRYKIDESLIPQSLKKDWGSFFIPKFNF  540
            VYLRKATPEAKNQLMKMLIDSIEITTDKQVKLVRYKIDESLIPQSLKKDWGSFFIPKFNF
Sbjct  481  VYLRKATPEAKNQLMKMLIDSIEITTDKQVKLVRYKIDESLIPQSLKKDWGSFFIPKFNF  540

Query  541  VINVTKKNRIENLSLLPLF  559
            VINVTKKNRIENLSLLPLF
Sbjct  541  VINVTKKNRIENLSLLPLF  559

2) M013TW_0056 in NC_016928


> FJ544922|23|G23|221148483|ACL99844.1|Staphylococcus_pseudintermedius_strain_06-3228|+|23718..25397|-|-|cassette 
chromosome 
recombinase C2
Length=559

 Score =  909 bits (3442),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 559/559 (100%), Positives = 559/559 (100%), Gaps = 0/559 (0%)

Query  1    MKGKIALYSRVSTSEQSEHGYSEKEQEQLLIKEVMKNFPGYDYETYTDSGISGKNIEGRP  60
            MKGKIALYSRVSTSEQSEHGYSEKEQEQLLIKEVMKNFPGYDYETYTDSGISGKNIEGRP
Sbjct  1    MKGKIALYSRVSTSEQSEHGYSEKEQEQLLIKEVMKNFPGYDYETYTDSGISGKNIEGRP  60

Query  61   AMKRLLQDVKDNKIEMVLSWKLNRISRSMRDVFNIIHEFKEHDVGYKSISENIDTSNASG  120
            AMKRLLQDVKDNKIEMVLSWKLNRISRSMRDVFNIIHEFKEHDVGYKSISENIDTSNASG
Sbjct  61   AMKRLLQDVKDNKIEMVLSWKLNRISRSMRDVFNIIHEFKEHDVGYKSISENIDTSNASG  120

Query  121  EVLVTMFGLIGSIERQTLISNVKLSMNAKARSGEAITGRVLGYKLSLNPLTQKNDLVIDE  180
            EVLVTMFGLIGSIERQTLISNVKLSMNAKARSGEAITGRVLGYKLSLNPLTQKNDLVIDE
Sbjct  121  EVLVTMFGLIGSIERQTLISNVKLSMNAKARSGEAITGRVLGYKLSLNPLTQKNDLVIDE  180

Query  181  NEAHIVREIFDLYLNHNKGFKAITTILNQKGYRTINQKPFSVFGVKYILNNPVYKGYVRF  240
            NEAHIVREIFDLYLNHNKGFKAITTILNQKGYRTINQKPFSVFGVKYILNNPVYKGYVRF
Sbjct  181  NEAHIVREIFDLYLNHNKGFKAITTILNQKGYRTINQKPFSVFGVKYILNNPVYKGYVRF  240

Query  241  NNHQNWAVQRRSGKSDKNDVILVKGKHEAIISEDVFDQVHEKLASKSFKPGRPIGGDFYL  300
            NNHQNWAVQRRSGKSDKNDVILVKGKHEAIISEDVFDQVHEKLASKSFKPGRPIGGDFYL
Sbjct  241  NNHQNWAVQRRSGKSDKNDVILVKGKHEAIISEDVFDQVHEKLASKSFKPGRPIGGDFYL  300

Query  301  RGLIKCPECGNNMVCRRTYYKTKKSKERTIKRYYICSLFNRSGSSACHSNAINAEVVERV  360
            RGLIKCPECGNNMVCRRTYYKTKKSKERTIKRYYICSLFNRSGSSACHSNAINAEVVERV
Sbjct  301  RGLIKCPECGNNMVCRRTYYKTKKSKERTIKRYYICSLFNRSGSSACHSNAINAEVVERV  360

Query  361  INVHLNRILSQPNVIKQIASSVIEELKQKHSKQTEIKYDIDSLEKQKAKVKTQQERLLEL  420
            INVHLNRILSQPNVIKQIASSVIEELKQKHSKQTEIKYDIDSLEKQKAKVKTQQERLLEL
Sbjct  361  INVHLNRILSQPNVIKQIASSVIEELKQKHSKQTEIKYDIDSLEKQKAKVKTQQERLLEL  420

Query  421  FLDDEMDSEMLKAKQSEMNQQLEVLDQQIKEAKQANQSQDDIPNFDKLKARLILMITRFS  480
            FLDDEMDSEMLKAKQSEMNQQLEVLDQQIKEAKQANQSQDDIPNFDKLKARLILMITRFS
Sbjct  421  FLDDEMDSEMLKAKQSEMNQQLEVLDQQIKEAKQANQSQDDIPNFDKLKARLILMITRFS  480

Query  481  VYLRKATPEAKNQLMKMLIDSIEITTDKQVKLVRYKIDESLIPQSLKKDWGSFFIPKFNF  540
            VYLRKATPEAKNQLMKMLIDSIEITTDKQVKLVRYKIDESLIPQSLKKDWGSFFIPKFNF
Sbjct  481  VYLRKATPEAKNQLMKMLIDSIEITTDKQVKLVRYKIDESLIPQSLKKDWGSFFIPKFNF  540

Query  541  VINVTKKNRIENLSLLPLF  559
            VINVTKKNRIENLSLLPLF
Sbjct  541  VINVTKKNRIENLSLLPLF  559

3) SA957_0051 in NC_022442


> FJ544922|23|G23|221148483|ACL99844.1|Staphylococcus_pseudintermedius_strain_06-3228|+|23718..25397|-|-|cassette 
chromosome 
recombinase C2
Length=559

 Score =  909 bits (3442),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 559/559 (100%), Positives = 559/559 (100%), Gaps = 0/559 (0%)

Query  1    MKGKIALYSRVSTSEQSEHGYSEKEQEQLLIKEVMKNFPGYDYETYTDSGISGKNIEGRP  60
            MKGKIALYSRVSTSEQSEHGYSEKEQEQLLIKEVMKNFPGYDYETYTDSGISGKNIEGRP
Sbjct  1    MKGKIALYSRVSTSEQSEHGYSEKEQEQLLIKEVMKNFPGYDYETYTDSGISGKNIEGRP  60

Query  61   AMKRLLQDVKDNKIEMVLSWKLNRISRSMRDVFNIIHEFKEHDVGYKSISENIDTSNASG  120
            AMKRLLQDVKDNKIEMVLSWKLNRISRSMRDVFNIIHEFKEHDVGYKSISENIDTSNASG
Sbjct  61   AMKRLLQDVKDNKIEMVLSWKLNRISRSMRDVFNIIHEFKEHDVGYKSISENIDTSNASG  120

Query  121  EVLVTMFGLIGSIERQTLISNVKLSMNAKARSGEAITGRVLGYKLSLNPLTQKNDLVIDE  180
            EVLVTMFGLIGSIERQTLISNVKLSMNAKARSGEAITGRVLGYKLSLNPLTQKNDLVIDE
Sbjct  121  EVLVTMFGLIGSIERQTLISNVKLSMNAKARSGEAITGRVLGYKLSLNPLTQKNDLVIDE  180

Query  181  NEAHIVREIFDLYLNHNKGFKAITTILNQKGYRTINQKPFSVFGVKYILNNPVYKGYVRF  240
            NEAHIVREIFDLYLNHNKGFKAITTILNQKGYRTINQKPFSVFGVKYILNNPVYKGYVRF
Sbjct  181  NEAHIVREIFDLYLNHNKGFKAITTILNQKGYRTINQKPFSVFGVKYILNNPVYKGYVRF  240

Query  241  NNHQNWAVQRRSGKSDKNDVILVKGKHEAIISEDVFDQVHEKLASKSFKPGRPIGGDFYL  300
            NNHQNWAVQRRSGKSDKNDVILVKGKHEAIISEDVFDQVHEKLASKSFKPGRPIGGDFYL
Sbjct  241  NNHQNWAVQRRSGKSDKNDVILVKGKHEAIISEDVFDQVHEKLASKSFKPGRPIGGDFYL  300

Query  301  RGLIKCPECGNNMVCRRTYYKTKKSKERTIKRYYICSLFNRSGSSACHSNAINAEVVERV  360
            RGLIKCPECGNNMVCRRTYYKTKKSKERTIKRYYICSLFNRSGSSACHSNAINAEVVERV
Sbjct  301  RGLIKCPECGNNMVCRRTYYKTKKSKERTIKRYYICSLFNRSGSSACHSNAINAEVVERV  360

Query  361  INVHLNRILSQPNVIKQIASSVIEELKQKHSKQTEIKYDIDSLEKQKAKVKTQQERLLEL  420
            INVHLNRILSQPNVIKQIASSVIEELKQKHSKQTEIKYDIDSLEKQKAKVKTQQERLLEL
Sbjct  361  INVHLNRILSQPNVIKQIASSVIEELKQKHSKQTEIKYDIDSLEKQKAKVKTQQERLLEL  420

Query  421  FLDDEMDSEMLKAKQSEMNQQLEVLDQQIKEAKQANQSQDDIPNFDKLKARLILMITRFS  480
            FLDDEMDSEMLKAKQSEMNQQLEVLDQQIKEAKQANQSQDDIPNFDKLKARLILMITRFS
Sbjct  421  FLDDEMDSEMLKAKQSEMNQQLEVLDQQIKEAKQANQSQDDIPNFDKLKARLILMITRFS  480

Query  481  VYLRKATPEAKNQLMKMLIDSIEITTDKQVKLVRYKIDESLIPQSLKKDWGSFFIPKFNF  540
            VYLRKATPEAKNQLMKMLIDSIEITTDKQVKLVRYKIDESLIPQSLKKDWGSFFIPKFNF
Sbjct  481  VYLRKATPEAKNQLMKMLIDSIEITTDKQVKLVRYKIDESLIPQSLKKDWGSFFIPKFNF  540

Query  541  VINVTKKNRIENLSLLPLF  559
            VINVTKKNRIENLSLLPLF
Sbjct  541  VINVTKKNRIENLSLLPLF  559

4) SAPIG0050 in NC_017333


> FJ544922|23|G23|221148483|ACL99844.1|Staphylococcus_pseudintermedius_strain_06-3228|+|23718..25397|-|-|cassette 
chromosome 
recombinase C2
Length=559

 Score =  900 bits (3408),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 554/559 (99%), Positives = 557/559 (99%), Gaps = 0/559 (0%)

Query  1    MKGKIALYSRVSTSEQSEHGYSIHEQEQVLIKEVVKNFPGYDYETYTDSGISGKNIEGRP  60
            MKGKIALYSRVSTSEQSEHGYS  EQEQ+LIKEV+KNFPGYDYETYTDSGISGKNIEGRP
Sbjct  1    MKGKIALYSRVSTSEQSEHGYSEKEQEQLLIKEVMKNFPGYDYETYTDSGISGKNIEGRP  60

Query  61   AMKRLLQDVKDNKIEMVLSWKLNRISRSMRDVFNIIHEFKEHDVGYKSISENIDTSNASG  120
            AMKRLLQDVKDNKIEMVLSWKLNRISRSMRDVFNIIHEFKEHDVGYKSISENIDTSNASG
Sbjct  61   AMKRLLQDVKDNKIEMVLSWKLNRISRSMRDVFNIIHEFKEHDVGYKSISENIDTSNASG  120

Query  121  EVLVTMFGLIGSIERQTLISNVKLSMNAKARSGEAITGRVLGYKLSLNPLTQKNDLVIDE  180
            EVLVTMFGLIGSIERQTLISNVKLSMNAKARSGEAITGRVLGYKLSLNPLTQKNDLVIDE
Sbjct  121  EVLVTMFGLIGSIERQTLISNVKLSMNAKARSGEAITGRVLGYKLSLNPLTQKNDLVIDE  180

Query  181  NEAHIVREIFDLYLNHNKGLKAITTILNQKGYRTINQKPFSVFGVKYILNNPVYKGYVRF  240
            NEAHIVREIFDLYLNHNKG+KAITTILNQKGYRTINQKPFSVFGVKYILNNPVYKGYVRF
Sbjct  181  NEAHIVREIFDLYLNHNKGFKAITTILNQKGYRTINQKPFSVFGVKYILNNPVYKGYVRF  240

Query  241  NNHQNWAVQRRSGKSDKNDVILVKGKHEAIISEDVFDQVHEKLASKSFKPGRPIGGDFYL  300
            NNHQNWAVQRRSGKSDKNDVILVKGKHEAIISEDVFDQVHEKLASKSFKPGRPIGGDFYL
Sbjct  241  NNHQNWAVQRRSGKSDKNDVILVKGKHEAIISEDVFDQVHEKLASKSFKPGRPIGGDFYL  300

Query  301  RGLIKCPECGNNMVCRRTYYKTKKSKERTIKRYYICSLFNRSGSSACHSNAINAEVVERV  360
            RGLIKCPECGNNMVCRRTYYKTKKSKERTIKRYYICSLFNRSGSSACHSNAINAEVVERV
Sbjct  301  RGLIKCPECGNNMVCRRTYYKTKKSKERTIKRYYICSLFNRSGSSACHSNAINAEVVERV  360

Query  361  INVHLNRILSQPNVIKQIASSVIEELKQKHSKQTEIKYDIDSLEKQKAKVKTQQERLLEL  420
            INVHLNRILSQPNVIKQIASSVIEELKQKHSKQTEIKYDIDSLEKQKAKVKTQQERLLEL
Sbjct  361  INVHLNRILSQPNVIKQIASSVIEELKQKHSKQTEIKYDIDSLEKQKAKVKTQQERLLEL  420

Query  421  FLDDEMDSEMLKAKQSEMNQQLEVLDQQIKEAKQANQSQDDIPNFDKLKARLILMITRFS  480
            FLDDEMDSEMLKAKQSEMNQQLEVLDQQIKEAKQANQSQDDIPNFDKLKARLILMITRFS
Sbjct  421  FLDDEMDSEMLKAKQSEMNQQLEVLDQQIKEAKQANQSQDDIPNFDKLKARLILMITRFS  480

Query  481  VYLRKATPEAKNQLMKMLIDSIEITTDKQVKLVRYKIDESLIPQSLKKDWGSFFIPKFNF  540
            VYLRKATPEAKNQLMKMLIDSIEITTDKQVKLVRYKIDESLIPQSLKKDWGSFFIPKFNF
Sbjct  481  VYLRKATPEAKNQLMKMLIDSIEITTDKQVKLVRYKIDESLIPQSLKKDWGSFFIPKFNF  540

Query  541  VINVTKKNRIENLSLLPLF  559
            VINVTKKNRIENLSLLPLF
Sbjct  541  VINVTKKNRIENLSLLPLF  559

5) ccrC in NC_021670


> FJ544922|23|G23|221148483|ACL99844.1|Staphylococcus_pseudintermedius_strain_06-3228|+|23718..25397|-|-|cassette 
chromosome 
recombinase C2
Length=559

 Score =  896 bits (3392),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 548/559 (99%), Positives = 556/559 (99%), Gaps = 0/559 (0%)

Query  1    MKGKIALYSRVSTSEQSEHGYSVKEQEQVLIKEVVKNFPGYDYETYTDSGISGKNIEGRP  60
            MKGKIALYSRVSTSEQSEHGYS KEQEQ+LIKEV+KNFPGYDYETYTDSGISGKNIEGRP
Sbjct  1    MKGKIALYSRVSTSEQSEHGYSEKEQEQLLIKEVMKNFPGYDYETYTDSGISGKNIEGRP  60

Query  61   AMKRLLQDVKDNKIEMVLSWKLNRISRSMRDVFNIIHEFKEHDVGYKSISENIDTSNASG  120
            AMKRLLQDVKDNKIEMVLSWKLNRISRSMRDVFNIIHEFKEHDVGYKSISENIDTSNASG
Sbjct  61   AMKRLLQDVKDNKIEMVLSWKLNRISRSMRDVFNIIHEFKEHDVGYKSISENIDTSNASG  120

Query  121  EVLVTMFGLIGSIERQTLISNVKLSMNAKARSGEAITGRVLGYKLSLNPLTQKNDLVINE  180
            EVLVTMFGLIGSIERQTLISNVKLSMNAKARSGEAITGRVLGYKLSLNPLTQKNDLVI+E
Sbjct  121  EVLVTMFGLIGSIERQTLISNVKLSMNAKARSGEAITGRVLGYKLSLNPLTQKNDLVIDE  180

Query  181  NEAHIVREIFDLYLNHNKGLKAITTILNQKGYRTINQKPFSVFGVKYILNNPVYKGYVRF  240
            NEAHIVREIFDLYLNHNKG+KAITTILNQKGYRTINQKPFSVFGVKYILNNPVYKGYVRF
Sbjct  181  NEAHIVREIFDLYLNHNKGFKAITTILNQKGYRTINQKPFSVFGVKYILNNPVYKGYVRF  240

Query  241  NNHQNWAVQRRSGKSDKNDVILVKGKHEAIISEDVFDQVHEKLASKSFKPGRPIGGDFYL  300
            NNHQNWAVQRRSGKSDKNDVILVKGKHEAIISEDVFDQVHEKLASKSFKPGRPIGGDFYL
Sbjct  241  NNHQNWAVQRRSGKSDKNDVILVKGKHEAIISEDVFDQVHEKLASKSFKPGRPIGGDFYL  300

Query  301  RGLIKCPECGNNMVCRRTYYKTKKSKERTIKRYYICSLFNRSGSSACHSNSINAEVVERV  360
            RGLIKCPECGNNMVCRRTYYKTKKSKERTIKRYYICSLFNRSGSSACHSN+INAEVVERV
Sbjct  301  RGLIKCPECGNNMVCRRTYYKTKKSKERTIKRYYICSLFNRSGSSACHSNAINAEVVERV  360

Query  361  INVHLNRILSQPNVIKQIASSVIEELKQKHSKQTEIKYDIDSLDKQKAKVKTQQERLLEL  420
            INVHLNRILSQPNVIKQIASSVIEELKQKHSKQTEIKYDIDSL+KQKAKVKTQQERLLEL
Sbjct  361  INVHLNRILSQPNVIKQIASSVIEELKQKHSKQTEIKYDIDSLEKQKAKVKTQQERLLEL  420

Query  421  FLDDEMDSEMLKAKQSKMNQQLEVLDQQIKEAKQANQSQDDIPNFDKLKARLILMITRFS  480
            FLDDEMDSEMLKAKQS MNQQLEVLDQQIKEAKQANQSQDDIPNFDKLKARLILMITRFS
Sbjct  421  FLDDEMDSEMLKAKQSEMNQQLEVLDQQIKEAKQANQSQDDIPNFDKLKARLILMITRFS  480

Query  481  VYLRKATPEAKNQLMKMLIDSIEITTDKQVKLVRYKIDESLIPQSLKKDWGSFFMPKFNF  540
            VYLRKATPEAKNQLMKMLIDSIEITTDKQVKLVRYKIDESLIPQSLKKDWGSFF+PKFNF
Sbjct  481  VYLRKATPEAKNQLMKMLIDSIEITTDKQVKLVRYKIDESLIPQSLKKDWGSFFIPKFNF  540

Query  541  VINVTNENRIENLSLLPLF  559
            VINVT+ NRIENLSLLPLF
Sbjct  541  VINVTKKNRIENLSLLPLF  559

6) ccrC in NC_007168


> FJ544922|23|G23|221148483|ACL99844.1|Staphylococcus_pseudintermedius_strain_06-3228|+|23718..25397|-|-|cassette 
chromosome 
recombinase C2
Length=559

 Score =  868 bits (3287),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 531/543 (98%), Positives = 540/543 (99%), Gaps = 0/543 (0%)

Query  1    MKGKIALYSRVSTSEQSEHGYSEKEQEQLLIKEVMKNFPGYDYETYTDSGISGKNIEGRP  60
            MKGKIALYSRVSTSEQSEHGYSEKEQEQLLIKEVMKNFPGYDYETYTDSGISGKNIEGRP
Sbjct  1    MKGKIALYSRVSTSEQSEHGYSEKEQEQLLIKEVMKNFPGYDYETYTDSGISGKNIEGRP  60

Query  61   AMKRLLQDVKDNKIEIVLSWKLNRISRSMRDVFNIIHEFKEHGVGYKSISENIDTSNASG  120
            AMKRLLQDVKDNKIE+VLSWKLNRISRSMRDVFNIIHEFKEH+VGYKSISENIDTSNASG
Sbjct  61   AMKRLLQDVKDNKIEMVLSWKLNRISRSMRDVFNIIHEFKEHDVGYKSISENIDTSNASG  120

Query  121  EVLVTMFGLIGSIERSTLASNVKMSMNAKARSGEAITGRVLGYKLSLNPLTQKNDLVIDE  180
            EVLVTMFGLIGSIER TL SNVK+SMNAKARSGEAITGRVLGYKLSLNPLTQKNDLVIDE
Sbjct  121  EVLVTMFGLIGSIERQTLISNVKLSMNAKARSGEAITGRVLGYKLSLNPLTQKNDLVIDE  180

Query  181  NEAHIVREIFDLYLNHNKGLKAITTILNQKGYRTINQKPFSVFGVKYILNNPVYKGYVRF  240
            NEAHIVREIFDLYLNHNKG+KAITTILNQKGYRTINQKPFSVFGVKYILNNPVYKGYVRF
Sbjct  181  NEAHIVREIFDLYLNHNKGFKAITTILNQKGYRTINQKPFSVFGVKYILNNPVYKGYVRF  240

Query  241  NNHQNWAVQRRSGKSDKNDVILVKGKHEAIISEDVFDQVHEKLASKSFKPGRPIGGDFYL  300
            NNHQNWAVQRRSGKSDKNDVILVKGKHEAIISEDVFDQVHEKLASKSFKPGRPIGGDFYL
Sbjct  241  NNHQNWAVQRRSGKSDKNDVILVKGKHEAIISEDVFDQVHEKLASKSFKPGRPIGGDFYL  300

Query  301  RGLIKCPECGNNMVCRRTYYKTKKSKERTIKRYYICSLFNRSGSSACHSNAINAEVVERV  360
            RGLIKCPECGNNMVCRRTYYKTKKSKERTIKRYYICSLFNRSGSSACHSNAINAEVVERV
Sbjct  301  RGLIKCPECGNNMVCRRTYYKTKKSKERTIKRYYICSLFNRSGSSACHSNAINAEVVERV  360

Query  361  INVHLNRILSQPNVIKQIASSVIEELKQKHSKQTEIKYDIDSLEKQKAKVKTQQERLLEL  420
            INVHLNRILSQPNVIKQIASSVIEELKQKHSKQTEIKYDIDSLEKQKAKVKTQQERLLEL
Sbjct  361  INVHLNRILSQPNVIKQIASSVIEELKQKHSKQTEIKYDIDSLEKQKAKVKTQQERLLEL  420

Query  421  FLDDEMDSEMLKAKQSEMNQQLEVLDQQIKEAKQANQSQGDIPNFDKLKARLILMITRFS  480
            FLDDEMDSEMLKAKQSEMNQQLEVLDQQIKEAKQANQSQ+DIPNFDKLKARLILMITRFS
Sbjct  421  FLDDEMDSEMLKAKQSEMNQQLEVLDQQIKEAKQANQSQDDIPNFDKLKARLILMITRFS  480

Query  481  LYLRKATPEAKNQLMKMLIDSIEITTDKQVKLVRYKIDESLIPQSLKKDWGSFFMPKFQF  540
            +YLRKATPEAKNQLMKMLIDSIEITTDKQVKLVRYKIDESLIPQSLKKDWGSFF+PKF+F
Sbjct  481  VYLRKATPEAKNQLMKMLIDSIEITTDKQVKLVRYKIDESLIPQSLKKDWGSFFIPKFNF  540

Query  541  EID  543
             I+
Sbjct  541  VIN  543

7) SAT0131_02876 in NC_017347


> FJ544922|23|G23|221148483|ACL99844.1|Staphylococcus_pseudintermedius_strain_06-3228|+|23718..25397|-|-|cassette 
chromosome 
recombinase C2
Length=559

 Score =  861 bits (3261),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 523/542 (97%), Positives = 538/542 (99%), Gaps = 0/542 (0%)

Query  1    MKGKIALYSRVSTSEQSEHGYSVKEQEQVLIKEVVKNFPGYDYETYTDSGISGKNIEGRP  60
            MKGKIALYSRVSTSEQSEHGYS KEQEQ+LIKEV+KNFPGYDYETYTDSGISGKNIEGRP
Sbjct  1    MKGKIALYSRVSTSEQSEHGYSEKEQEQLLIKEVMKNFPGYDYETYTDSGISGKNIEGRP  60

Query  61   AMKRLLQDVKDNKIEMVLSWKLNRISRSMRDVFNIIHEFKEHDVGYKSISENIDTSNASG  120
            AMKRLLQDVKDNKIEMVLSWKLNRISRSMRDVFNIIHEFKEHDVGYKSISENIDTSNASG
Sbjct  61   AMKRLLQDVKDNKIEMVLSWKLNRISRSMRDVFNIIHEFKEHDVGYKSISENIDTSNASG  120

Query  121  EVLVTMFGLIGSIERQTLISNVKLSMNAKARSGEAITGRVLGYKLSLNPLTQKNDLVINE  180
            EVLVTMFGLIGSIERQTLISNVKLSMNAKARSGEAITGRVLGYKLSLNPLTQKNDLVI+E
Sbjct  121  EVLVTMFGLIGSIERQTLISNVKLSMNAKARSGEAITGRVLGYKLSLNPLTQKNDLVIDE  180

Query  181  NEAHIVREIFDLYLNHNKGLKAITTILNQKGYRTINQKPFSVFGVKYILNNPVYKGYVRF  240
            NEAHIVREIFDLYLNHNKG+KAITTILNQKGYRTINQKPFSVFGVKYILNNPVYKGYVRF
Sbjct  181  NEAHIVREIFDLYLNHNKGFKAITTILNQKGYRTINQKPFSVFGVKYILNNPVYKGYVRF  240

Query  241  NNHQNWAVQRRSGKSDKNDVILVKGKHEAIISEDVFDQVHEKLASKSFKPGRPIGGDFYL  300
            NNHQNWAVQRRSGKSDKNDVILVKGKHEAIISEDVFDQVHEKLASKSFKPGRPIGGDFYL
Sbjct  241  NNHQNWAVQRRSGKSDKNDVILVKGKHEAIISEDVFDQVHEKLASKSFKPGRPIGGDFYL  300

Query  301  RGLIKCPECGNNMVCRRTYYKTKKSKERTIKRYYICSLFNRSGSSACHSNSINAEVVERV  360
            RGLIKCPECGNNMVCRRTYYKTKKSKERTIKRYYICSLFNRSGSSACHSN+INAEVVERV
Sbjct  301  RGLIKCPECGNNMVCRRTYYKTKKSKERTIKRYYICSLFNRSGSSACHSNAINAEVVERV  360

Query  361  INVHLNRILSQPDIIKQIASNVIEELKQKHSNQTEIKYDIDSLEKQKAKLKRQQERLLEL  420
            INVHLNRILSQP++IKQIAS+VIEELKQKHS+QTEIKYDIDSLEKQKAK+K QQERLLEL
Sbjct  361  INVHLNRILSQPNVIKQIASSVIEELKQKHSKQTEIKYDIDSLEKQKAKVKTQQERLLEL  420

Query  421  FLDDQMDSGMLKAKQSEMNQQLEVLDQQIKEAKQANQSQDEIPNFDKLKGRLILMITRFS  480
            FLDD+MDS MLKAKQSEMNQQLEVLDQQIKEAKQANQSQD+IPNFDKLK+RLILMITRFS
Sbjct  421  FLDDEMDSEMLKAKQSEMNQQLEVLDQQIKEAKQANQSQDDIPNFDKLKARLILMITRFS  480

Query  481  VYLRKATPEAKNQLMKMLIDSIEITTDKQVKLVRYKIDESLIPQSLKKDWGSFFMPKFQF  540
            VYLRKATPEAKNQLMKMLIDSIEITTDKQVKLVRYKIDESLIPQSLKKDWGSFF+PKF+F
Sbjct  481  VYLRKATPEAKNQLMKMLIDSIEITTDKQVKLVRYKIDESLIPQSLKKDWGSFFIPKFNF  540

Query  541  EI  542
             I
Sbjct  541  VI  542

8) M013TW_0038 in NC_016928


> FJ544922|23|G23|221148483|ACL99844.1|Staphylococcus_pseudintermedius_strain_06-3228|+|23718..25397|-|-|cassette 
chromosome 
recombinase C2
Length=559

 Score =  857 bits (3245),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 518/542 (96%), Positives = 539/542 (99%), Gaps = 0/542 (0%)

Query  1    MKGKIALYSRVSTSEQSEHGYSIHEQEQVLIKEVVKNFPGYDYETYTDSGISGKNIEGRP  60
            MKGKIALYSRVSTSEQSEHGYS  EQEQ+LIKEV+KNFPGYDYETYTDSGISGKNIEGRP
Sbjct  1    MKGKIALYSRVSTSEQSEHGYSEKEQEQLLIKEVMKNFPGYDYETYTDSGISGKNIEGRP  60

Query  61   AMKRLLQDVKDNKIEMVLSWKLNRISRSMRDVFNIIHEFKEHDVGYKSISENIDTSNASG  120
            AMKRLLQDVKDNKIEMVLSWKLNRISRSMRDVFNIIHEFKEHDVGYKSISENIDTSNASG
Sbjct  61   AMKRLLQDVKDNKIEMVLSWKLNRISRSMRDVFNIIHEFKEHDVGYKSISENIDTSNASG  120

Query  121  EVLVTMFGLIGSIERQTLISNVKLSMNAKARSGEAITGRVLGYKLSLNPLTQKNDLVIDE  180
            EVLVTMFGLIGSIERQTLISNVKLSMNAKARSGEAITGRVLGYKLSLNPLTQKNDLVIDE
Sbjct  121  EVLVTMFGLIGSIERQTLISNVKLSMNAKARSGEAITGRVLGYKLSLNPLTQKNDLVIDE  180

Query  181  NEANIVREIFDLYLNHNKGLKAITTVLNQKGYRTINQKPFSVYGVKYILNNPVYKGYVRF  240
            NEA+IVREIFDLYLNHNKG+KAITT+LNQKGYRTINQKPFSV+GVKYILNNPVYKGYVRF
Sbjct  181  NEAHIVREIFDLYLNHNKGFKAITTILNQKGYRTINQKPFSVFGVKYILNNPVYKGYVRF  240

Query  241  NNHQNWAVQRRSGKSDKNDVILVKGKHEAIISEEVFDKVHEKLASKSFKPGRPIGGDFYL  300
            NNHQNWAVQRRSGKSDKNDVILVKGKHEAIISE+VFD+VHEKLASKSFKPGRPIGGDFYL
Sbjct  241  NNHQNWAVQRRSGKSDKNDVILVKGKHEAIISEDVFDQVHEKLASKSFKPGRPIGGDFYL  300

Query  301  RGLIKCPECGNNMVCRRTYYKTKKSKERTIKRYYICSLFNRSGSSACHSNSINAEVVERV  360
            RGLIKCPECGNNMVCRRTYYKTKKSKERTIKRYYICSLFNRSGSSACHSN+INAEVVERV
Sbjct  301  RGLIKCPECGNNMVCRRTYYKTKKSKERTIKRYYICSLFNRSGSSACHSNAINAEVVERV  360

Query  361  INVHLNRILSQPDIIKQIASNVIEELKQKHSNQTEIKYDIDSLEKQKAKLKTQQERLLEL  420
            INVHLNRILSQP++IKQIAS+VIEELKQKHS+QTEIKYDIDSLEKQKAK+KTQQERLLEL
Sbjct  361  INVHLNRILSQPNVIKQIASSVIEELKQKHSKQTEIKYDIDSLEKQKAKVKTQQERLLEL  420

Query  421  FLDDQMDSEMLKAKQSQMNQQLEVLDQQIKEAQQANQSQDEIPNFDKLKGRLILMITRFS  480
            FLDD+MDSEMLKAKQS+MNQQLEVLDQQIKEA+QANQSQD+IPNFDKLK+RLILMITRFS
Sbjct  421  FLDDEMDSEMLKAKQSEMNQQLEVLDQQIKEAKQANQSQDDIPNFDKLKARLILMITRFS  480

Query  481  VYLRKATPEAKNQLMKMLIDSIEITTDKQVKLVRYKIDESLIPQSLKKDWGSFFMPKFQF  540
            VYLRKATPEAKNQLMKMLIDSIEITTDKQVKLVRYKIDESLIPQSLKKDWGSFF+PKF+F
Sbjct  481  VYLRKATPEAKNQLMKMLIDSIEITTDKQVKLVRYKIDESLIPQSLKKDWGSFFIPKFNF  540

Query  541  EI  542
             I
Sbjct  541  VI  542

9) ccrC in NC_022442


> FJ544922|23|G23|221148483|ACL99844.1|Staphylococcus_pseudintermedius_strain_06-3228|+|23718..25397|-|-|cassette 
chromosome 
recombinase C2
Length=559

 Score =  857 bits (3245),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 518/542 (96%), Positives = 539/542 (99%), Gaps = 0/542 (0%)

Query  1    MKGKIALYSRVSTSEQSEHGYSIHEQEQVLIKEVVKNFPGYDYETYTDSGISGKNIEGRP  60
            MKGKIALYSRVSTSEQSEHGYS  EQEQ+LIKEV+KNFPGYDYETYTDSGISGKNIEGRP
Sbjct  1    MKGKIALYSRVSTSEQSEHGYSEKEQEQLLIKEVMKNFPGYDYETYTDSGISGKNIEGRP  60

Query  61   AMKRLLQDVKDNKIEMVLSWKLNRISRSMRDVFNIIHEFKEHDVGYKSISENIDTSNASG  120
            AMKRLLQDVKDNKIEMVLSWKLNRISRSMRDVFNIIHEFKEHDVGYKSISENIDTSNASG
Sbjct  61   AMKRLLQDVKDNKIEMVLSWKLNRISRSMRDVFNIIHEFKEHDVGYKSISENIDTSNASG  120

Query  121  EVLVTMFGLIGSIERQTLISNVKLSMNAKARSGEAITGRVLGYKLSLNPLTQKNDLVIDE  180
            EVLVTMFGLIGSIERQTLISNVKLSMNAKARSGEAITGRVLGYKLSLNPLTQKNDLVIDE
Sbjct  121  EVLVTMFGLIGSIERQTLISNVKLSMNAKARSGEAITGRVLGYKLSLNPLTQKNDLVIDE  180

Query  181  NEANIVREIFDLYLNHNKGLKAITTVLNQKGYRTINQKPFSVYGVKYILNNPVYKGYVRF  240
            NEA+IVREIFDLYLNHNKG+KAITT+LNQKGYRTINQKPFSV+GVKYILNNPVYKGYVRF
Sbjct  181  NEAHIVREIFDLYLNHNKGFKAITTILNQKGYRTINQKPFSVFGVKYILNNPVYKGYVRF  240

Query  241  NNHQNWAVQRRSGKSDKNDVILVKGKHEAIISEEVFDKVHEKLASKSFKPGRPIGGDFYL  300
            NNHQNWAVQRRSGKSDKNDVILVKGKHEAIISE+VFD+VHEKLASKSFKPGRPIGGDFYL
Sbjct  241  NNHQNWAVQRRSGKSDKNDVILVKGKHEAIISEDVFDQVHEKLASKSFKPGRPIGGDFYL  300

Query  301  RGLIKCPECGNNMVCRRTYYKTKKSKERTIKRYYICSLFNRSGSSACHSNSINAEVVERV  360
            RGLIKCPECGNNMVCRRTYYKTKKSKERTIKRYYICSLFNRSGSSACHSN+INAEVVERV
Sbjct  301  RGLIKCPECGNNMVCRRTYYKTKKSKERTIKRYYICSLFNRSGSSACHSNAINAEVVERV  360

Query  361  INVHLNRILSQPDIIKQIASNVIEELKQKHSNQTEIKYDIDSLEKQKAKLKTQQERLLEL  420
            INVHLNRILSQP++IKQIAS+VIEELKQKHS+QTEIKYDIDSLEKQKAK+KTQQERLLEL
Sbjct  361  INVHLNRILSQPNVIKQIASSVIEELKQKHSKQTEIKYDIDSLEKQKAKVKTQQERLLEL  420

Query  421  FLDDQMDSEMLKAKQSQMNQQLEVLDQQIKEAQQANQSQDEIPNFDKLKGRLILMITRFS  480
            FLDD+MDSEMLKAKQS+MNQQLEVLDQQIKEA+QANQSQD+IPNFDKLK+RLILMITRFS
Sbjct  421  FLDDEMDSEMLKAKQSEMNQQLEVLDQQIKEAKQANQSQDDIPNFDKLKARLILMITRFS  480

Query  481  VYLRKATPEAKNQLMKMLIDSIEITTDKQVKLVRYKIDESLIPQSLKKDWGSFFMPKFQF  540
            VYLRKATPEAKNQLMKMLIDSIEITTDKQVKLVRYKIDESLIPQSLKKDWGSFF+PKF+F
Sbjct  481  VYLRKATPEAKNQLMKMLIDSIEITTDKQVKLVRYKIDESLIPQSLKKDWGSFFIPKFNF  540

Query  541  EI  542
             I
Sbjct  541  VI  542

10) SAPIG0035 in NC_017333


> FJ544922|23|G23|221148483|ACL99844.1|Staphylococcus_pseudintermedius_strain_06-3228|+|23718..25397|-|-|cassette 
chromosome 
recombinase C2
Length=559

 Score =  857 bits (3245),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 518/542 (96%), Positives = 539/542 (99%), Gaps = 0/542 (0%)

Query  1    MKGKIALYSRVSTSEQSEHGYSIHEQEQVLIKEVVKNFPGYDYETYTDSGISGKNIEGRP  60
            MKGKIALYSRVSTSEQSEHGYS  EQEQ+LIKEV+KNFPGYDYETYTDSGISGKNIEGRP
Sbjct  1    MKGKIALYSRVSTSEQSEHGYSEKEQEQLLIKEVMKNFPGYDYETYTDSGISGKNIEGRP  60

Query  61   AMKRLLQDVKDNKIEMVLSWKLNRISRSMRDVFNIIHEFKEHDVGYKSISENIDTSNASG  120
            AMKRLLQDVKDNKIEMVLSWKLNRISRSMRDVFNIIHEFKEHDVGYKSISENIDTSNASG
Sbjct  61   AMKRLLQDVKDNKIEMVLSWKLNRISRSMRDVFNIIHEFKEHDVGYKSISENIDTSNASG  120

Query  121  EVLVTMFGLIGSIERQTLISNVKLSMNAKARSGEAITGRVLGYKLSLNPLTQKNDLVIDE  180
            EVLVTMFGLIGSIERQTLISNVKLSMNAKARSGEAITGRVLGYKLSLNPLTQKNDLVIDE
Sbjct  121  EVLVTMFGLIGSIERQTLISNVKLSMNAKARSGEAITGRVLGYKLSLNPLTQKNDLVIDE  180

Query  181  NEANIVREIFDLYLNHNKGLKAITTVLNQKGYRTINQKPFSVYGVKYILNNPVYKGYVRF  240
            NEA+IVREIFDLYLNHNKG+KAITT+LNQKGYRTINQKPFSV+GVKYILNNPVYKGYVRF
Sbjct  181  NEAHIVREIFDLYLNHNKGFKAITTILNQKGYRTINQKPFSVFGVKYILNNPVYKGYVRF  240

Query  241  NNHQNWAVQRRSGKSDKNDVILVKGKHEAIISEEVFDKVHEKLASKSFKPGRPIGGDFYL  300
            NNHQNWAVQRRSGKSDKNDVILVKGKHEAIISE+VFD+VHEKLASKSFKPGRPIGGDFYL
Sbjct  241  NNHQNWAVQRRSGKSDKNDVILVKGKHEAIISEDVFDQVHEKLASKSFKPGRPIGGDFYL  300

Query  301  RGLIKCPECGNNMVCRRTYYKTKKSKERTIKRYYICSLFNRSGSSACHSNSINAEVVERV  360
            RGLIKCPECGNNMVCRRTYYKTKKSKERTIKRYYICSLFNRSGSSACHSN+INAEVVERV
Sbjct  301  RGLIKCPECGNNMVCRRTYYKTKKSKERTIKRYYICSLFNRSGSSACHSNAINAEVVERV  360

Query  361  INVHLNRILSQPDIIKQIASNVIEELKQKHSNQTEIKYDIDSLEKQKAKLKTQQERLLEL  420
            INVHLNRILSQP++IKQIAS+VIEELKQKHS+QTEIKYDIDSLEKQKAK+KTQQERLLEL
Sbjct  361  INVHLNRILSQPNVIKQIASSVIEELKQKHSKQTEIKYDIDSLEKQKAKVKTQQERLLEL  420

Query  421  FLDDQMDSEMLKAKQSQMNQQLEVLDQQIKEAQQANQSQDEIPNFDKLKGRLILMITRFS  480
            FLDD+MDSEMLKAKQS+MNQQLEVLDQQIKEA+QANQSQD+IPNFDKLK+RLILMITRFS
Sbjct  421  FLDDEMDSEMLKAKQSEMNQQLEVLDQQIKEAKQANQSQDDIPNFDKLKARLILMITRFS  480

Query  481  VYLRKATPEAKNQLMKMLIDSIEITTDKQVKLVRYKIDESLIPQSLKKDWGSFFMPKFQF  540
            VYLRKATPEAKNQLMKMLIDSIEITTDKQVKLVRYKIDESLIPQSLKKDWGSFF+PKF+F
Sbjct  481  VYLRKATPEAKNQLMKMLIDSIEITTDKQVKLVRYKIDESLIPQSLKKDWGSFFIPKFNF  540

Query  541  EI  542
             I
Sbjct  541  VI  542

11) SSP0046 in NC_007350


> FJ544922|23|G23|221148483|ACL99844.1|Staphylococcus_pseudintermedius_strain_06-3228|+|23718..25397|-|-|cassette 
chromosome 
recombinase C2
Length=559

 Score =  839 bits (3177),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 502/557 (91%), Positives = 542/557 (98%), Gaps = 0/557 (0%)

Query  1    MSGKIALYSRVSTSEQSEHGYSVKEQEQVLIKEVVKNFPGYDYETYIDSGISGKNIEGRP  60
            M GKIALYSRVSTSEQSEHGYS KEQEQ+LIKEV+KNFPGYDYETY DSGISGKNIEGRP
Sbjct  1    MKGKIALYSRVSTSEQSEHGYSEKEQEQLLIKEVMKNFPGYDYETYTDSGISGKNIEGRP  60

Query  61   AMKRLLQDVKDNKIEMVLSWKLNRISRSMRDVFNIIHEFKEHGVGYKSISENIDTSNASG  120
            AMKRLLQDVKDNKIEMVLSWKLNRISRSMRDVFNIIHEFKEH+VGYKSISENIDTSNASG
Sbjct  61   AMKRLLQDVKDNKIEMVLSWKLNRISRSMRDVFNIIHEFKEHDVGYKSISENIDTSNASG  120

Query  121  EVLVTMFGLIGSIERSTLISNVKMSMNAKARSGEAITGRLQGYRLSLNPLTQKNDLVIDE  180
            EVLVTMFGLIGSIER TLISNVK+SMNAKARSGEAITGR+ GY+LSLNPLTQKNDLVIDE
Sbjct  121  EVLVTMFGLIGSIERQTLISNVKLSMNAKARSGEAITGRVLGYKLSLNPLTQKNDLVIDE  180

Query  181  NEANIVREIFDLYLNHNKGLKAITTVLNQKGYRTINQKPFSVYGVKYILNNPVYKGYVRF  240
            NEA+IVREIFDLYLNHNKG+KAITT+LNQKGYRTINQKPFSV+GVKYILNNPVYKGYVRF
Sbjct  181  NEAHIVREIFDLYLNHNKGFKAITTILNQKGYRTINQKPFSVFGVKYILNNPVYKGYVRF  240

Query  241  NNHQNWAVQRRSGKSDKNDVILVKGKHEAIISEEVFDQVHEKLASKSFKPGRPIGGDFYL  300
            NNHQNWAVQRRSGKSDKNDVILVKGKHEAIISE+VFDQVHEKLASKSFKPGRPIGGDFYL
Sbjct  241  NNHQNWAVQRRSGKSDKNDVILVKGKHEAIISEDVFDQVHEKLASKSFKPGRPIGGDFYL  300

Query  301  RSLIKCPECGNNMVCRRTYYKTKKSKERTIKRYYICSLFNRSGSSACHSNAINAEVVERV  360
            R+LIKCPECGNNMVCRRTYYKTKKSKERTIKRYYICSLFNRSGSSACHSNAINAEVVERV
Sbjct  301  RGLIKCPECGNNMVCRRTYYKTKKSKERTIKRYYICSLFNRSGSSACHSNAINAEVVERV  360

Query  361  INVHLNRILSQPDIIKQIASNVIEELKQKHSNQTEIKYDIDSLEKQKAKLKTQQERLLEL  420
            INVHLNRILSQP++IKQIAS+VIEELKQKHS+QTEIKYDIDSLEKQKAK+KTQQERLLEL
Sbjct  361  INVHLNRILSQPNVIKQIASSVIEELKQKHSKQTEIKYDIDSLEKQKAKVKTQQERLLEL  420

Query  421  FLDDQMDSEMLKAKQSQMNGQLKMLDKQIKEAQQATESQDEVPNFDKLKSRLTMMISRFS  480
            FLDD+MDSEMLKAKQS+MN QL +LD+QIKEA+QA +SQD++PNFDKLK+RL +MI+RFS
Sbjct  421  FLDDEMDSEMLKAKQSEMNQQLEVLDQQIKEAKQANQSQDDIPNFDKLKARLILMITRFS  480

Query  481  VYLREATPEAKNQLMKMLIDSIEITTDKKVKLVRYKIDESLIPQSLKKDWGSFFMPKIHF  540
            VYLR ATPEAKNQLMKMLIDSIEITTDK+VKLVRYKIDESLIPQSLKKDWGSFF+PK++F
Sbjct  481  VYLRKATPEAKNQLMKMLIDSIEITTDKQVKLVRYKIDESLIPQSLKKDWGSFFIPKFNF  540

Query  541  IIYGTQKYSIDKITTFA  557
            +I  T+K  I++++ ++
Sbjct  541  VINVTKKNRIENLSLLP  557

12) spoIVCA in NC_006270


> FJ544922|23|G23|221148483|ACL99844.1|Staphylococcus_pseudintermedius_strain_06-3228|+|23718..25397|-|-|cassette 
chromosome 
recombinase C2
Length=559

 Score =  225 bits (840),  Expect = 2e-60, Method: Compositional matrix adjust.
 Identities = 161/392 (42%), Positives = 254/392 (65%), Gaps = 22/392 (5%)

Query  6    RVAIYCRVSTEEQATEGYSISAqlqtlrqytqly--GWEIAEEYVDEGISGKNISGRPAM  63
            ++A+Y RVST EQ+ +GYS   Q Q L +       G +  E Y D GISGKNI GRPAM
Sbjct  4    KIALYSRVSTSEQSEHGYSEKEQEQLLIKEVMKNFPGYDY-ETYTDSGISGKNIEGRPAM  62

Query  64   QKLISDVEKDKFQAVLVWKISRLSRNMLDTLTLLDKFEDYGVKFISYSENFDTGSPIGRL  123
            ++L+ DV  +K++ VL WK++R+SR+M D + +++ F + +V + S SEN+DT+++ G +
Sbjct  63   KRLLQDVKDNKIEMVLSWKLNRISRSMRDVFNIIHEFKEHDVGYKSISENIDTSNASGEV  122

Query  124  VVQLMASIAEMERNTLSENVKLGMKQRALEGSWNGGVVFGYD------TIEKELVINKKE  177
            +V + + I+ +ER+TL  NVKL+M+ +A  G    G V+GY       T  ++LVI+ +E
Sbjct  123  LVTMFGLIGSIERQTLISNVKLSMNAKARSGEAITGRVLGYKLSLNPLTQKNDLVIDENE  182

Query  178  AEIVQQIYQLY-ANGKGLKSIANYLNKAGYRTKRNCYFSINGVAQILDNVIYNGKISWLK  236
            A+IV++I++LY  + KG+K+I+  LN+ GYRT  +  FS+ GV  IL+N +Y+G +   +
Sbjct  183  AHIVREIFDLYLNHNKGFKAITTILNQKGYRTINQKPFSVFGVKYILNNPVYKGYVRFNN  242

Query  237  VENWDTKRRRGKN--PNPILVEGQHEAIISDELWSMVQARRKSKSFKQ-RQSNEPFLLSS  293
             +NW  +RR GK+   + ILV G+HEAIIS+++   V+ +  SKSFK  R     F L +
Sbjct  243  HQNWAVQRRSGKSDKNDVILVKGKHEAIISEDVFDQVHEKLASKSFKPGRPIGGDFYLRG  302

Query  294  LLRCPDCGQGMVPAIT---TNKRKDGTKKKYRYYVCSNFHNKGSSACRANSIKAYDAEYE  350
            L++CP+CG+ MV   T   T+K K+ T K  RYY+CS F+  GSSAC++N+I+A   E  
Sbjct  303  LIKCPECGNNMVCRRTYYKTKKSKERTIK--RYYICSLFNRSGSSACHSNAINAEVVERV  360

Query  351  VINKIEKILSNQNQLFSKLQSINTTSIESLNQ  382
            +   +++ILS+ N     ++ I ++ IE L+Q
Sbjct  361  INVHLNRILSQPNV----IKQIASSVIEELKQ  388

13) BLi04323 in NC_006322


> FJ544922|23|G23|221148483|ACL99844.1|Staphylococcus_pseudintermedius_strain_06-3228|+|23718..25397|-|-|cassette 
chromosome 
recombinase C2
Length=559

 Score =  225 bits (840),  Expect = 2e-60, Method: Compositional matrix adjust.
 Identities = 161/392 (42%), Positives = 254/392 (65%), Gaps = 22/392 (5%)

Query  6    RVAIYCRVSTEEQATEGYSISAqlqtlrqytqly--GWEIAEEYVDEGISGKNISGRPAM  63
            ++A+Y RVST EQ+ +GYS   Q Q L +       G +  E Y D GISGKNI GRPAM
Sbjct  4    KIALYSRVSTSEQSEHGYSEKEQEQLLIKEVMKNFPGYDY-ETYTDSGISGKNIEGRPAM  62

Query  64   QKLISDVEKDKFQAVLVWKISRLSRNMLDTLTLLDKFEDYGVKFISYSENFDTGSPIGRL  123
            ++L+ DV  +K++ VL WK++R+SR+M D + +++ F + +V + S SEN+DT+++ G +
Sbjct  63   KRLLQDVKDNKIEMVLSWKLNRISRSMRDVFNIIHEFKEHDVGYKSISENIDTSNASGEV  122

Query  124  VVQLMASIAEMERNTLSENVKLGMKQRALEGSWNGGVVFGYD------TIEKELVINKKE  177
            +V + + I+ +ER+TL  NVKL+M+ +A  G    G V+GY       T  ++LVI+ +E
Sbjct  123  LVTMFGLIGSIERQTLISNVKLSMNAKARSGEAITGRVLGYKLSLNPLTQKNDLVIDENE  182

Query  178  AEIVQQIYQLY-ANGKGLKSIANYLNKAGYRTKRNCYFSINGVAQILDNVIYNGKISWLK  236
            A+IV++I++LY  + KG+K+I+  LN+ GYRT  +  FS+ GV  IL+N +Y+G +   +
Sbjct  183  AHIVREIFDLYLNHNKGFKAITTILNQKGYRTINQKPFSVFGVKYILNNPVYKGYVRFNN  242

Query  237  VENWDTKRRRGKN--PNPILVEGQHEAIISDELWSMVQARRKSKSFKQ-RQSNEPFLLSS  293
             +NW  +RR GK+   + ILV G+HEAIIS+++   V+ +  SKSFK  R     F L +
Sbjct  243  HQNWAVQRRSGKSDKNDVILVKGKHEAIISEDVFDQVHEKLASKSFKPGRPIGGDFYLRG  302

Query  294  LLRCPDCGQGMVPAIT---TNKRKDGTKKKYRYYVCSNFHNKGSSACRANSIKAYDAEYE  350
            L++CP+CG+ MV   T   T+K K+ T K  RYY+CS F+  GSSAC++N+I+A   E  
Sbjct  303  LIKCPECGNNMVCRRTYYKTKKSKERTIK--RYYICSLFNRSGSSACHSNAINAEVVERV  360

Query  351  VINKIEKILSNQNQLFSKLQSINTTSIESLNQ  382
            +   +++ILS+ N     ++ I ++ IE L+Q
Sbjct  361  INVHLNRILSQPNV----IKQIASSVIEELKQ  388