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PAthogenisity Island DataBase (PAI DB)

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Homologs of ccrA gene of D86934

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) ccrA
( YP_039531.1 )

site-specific recombinase

NC_002952
(Staphylococcus aureus MRSA252)

0.0

2) SERP2498
( YP_190040.1 )

cassette chromosome recombinase A

NC_002976
(Staphylococcus epidermidis RP62A)

0.0

3) ccrA
( YP_005740812.1 )

Cassette chromosome recombinase A

NC_017340
(Staphylococcus aureus 04-02981)

0.0

100

4) CA347_59
( YP_008126943.1 )

recombinase family protein

NC_021554
(Staphylococcus aureus CA-347)

0.0

100

5) SaurJH1_0050
( YP_001315203.1 )

resolvase domain-containing protein

NC_009632
(Staphylococcus aureus JH1)

0.0

100

6) SaurJH9_0049
( YP_001245437.1 )

resolvase

NC_009487
(Staphylococcus aureus JH9)

0.0

100

7) ccrA
( YP_001440651.1 )

cassette chromosome recombinase A

NC_009782
(Staphylococcus aureus Mu3)

0.0

100

8) ccrA
( NP_370586.1 )

cassette chromosome recombinase A

NC_002758
(Staphylococcus aureus Mu50)

0.0

100

9) ccrA
( NP_373298.1 )

cassette chromosome recombinase A

NC_002745
(Staphylococcus aureus N315)

0.0

100

10) ccrA
( YP_008586688.1 )

cassette chromosome recombinase A

NC_022443
(Staphylococcus aureus SA40)

0.0

11) ccrA
( YP_006236414.1 )

site-specific recombinase

NC_017763
(Staphylococcus aureus HO 5096 0412)

0.0

12) SE0037
( NP_763592.1 )

cassette chromosome recombinase A

NC_004461
(Staphylococcus epidermidis ATCC 12228)

0.0

13) MS7_0070
( YP_005756537.1 )

resolvase, N terminal domain protein

NC_017351
(Staphylococcus aureus 11819-97)

0.0

14) ccrA
( YP_492758.1 )

cassette chromosome recombinase A

NC_007793
(Staphylococcus aureus FPR3757)

0.0

15) ccrA
( YP_005738213.1 )

cassette chromosome recombinase A1

NC_017338
(Staphylococcus aureus JKD6159)

0.0

16) SAMSHR1132_00410
( YP_005324564.1 )

site-specific recombinase

NC_016941
(Staphylococcus aureus MSHR1132)

0.0

17) ccrA
( YP_001573964.1 )

cassette chromosome recombinase A

NC_010079
(Staphylococcus aureus TCH1516)

0.0

18) BN843_710
( YP_007867150.1 )

Cassette chromosome recombinase A

NC_021059
(Staphylococcus aureus M1)

0.0

19) ccrA
( YP_005746509.1 )

site-specific recombinase

NC_017342
(Staphylococcus aureus TCH60)

0.0

20) ccrA
( NP_644854.1 )

cassette chromosome recombinase A

NC_003923
(Staphylococcus aureus MW2)

0.0

21) SAKOR_00048
( YP_008490232.1 )

Site-specific recombinase

NC_022226
(Staphylococcus aureus CN1)

0.0

22) ccrA1
( YP_005754052.1 )

site-specific recombinase CcrA1

NC_017349
(Staphylococcus aureus LGA251)

5e-175

23) SSP0036
( YP_300126.1 )

cassette chromosome recombinase A

NC_007350
(Staphylococcus saprophyticus ATCC 15305)

1e-172

24) ccrA1
( YP_184952.1 )

cassette chromosome recombinase A1

NC_002951
(Staphylococcus aureus COL)

2e-172

25) ccrA1
( YP_007582643.1 )

Cassette chromosome recombinase A1

NC_020536
(Staphylococcus aureus ST228)

2e-172

26) ccrA1
( YP_007620358.1 )

Cassette chromosome recombinase A1

NC_020566
(Staphylococcus aureus ST228)

2e-172

27) ccrA1
( YP_007622344.1 )

Cassette chromosome recombinase A1

NC_020568
(Staphylococcus aureus ST228)

2e-172

28) ccrA1
( YP_007576656.1 )

Cassette chromosome recombinase A1

NC_020529
(Staphylococcus aureus ST228 (isolate=10388))

2e-172

29) ccrA1
( YP_007618371.1 )

Cassette chromosome recombinase A1

NC_020564
(Staphylococcus aureus ST228 (isolate=10497))

2e-172

30) ccrA1
( YP_007578664.1 )

Cassette chromosome recombinase A1

NC_020532
(Staphylococcus aureus ST228 (isolate=15532))

2e-172

31) ccrA1
( YP_007580628.1 )

Cassette chromosome recombinase A1

NC_020533
(Staphylococcus aureus ST228 (isolate=16035))

2e-172

32) ccrA1
( YP_007584607.1 )

Cassette chromosome recombinase A1

NC_020537
(Staphylococcus aureus ST228 (isolate=18412))

2e-172

33) ccrA1
( YP_042166.1 )

site-specific recombinase

NC_002953
(Staphylococcus aureus MSSA476)

1e-171

34) ccrA
( YP_008167248.1 )

cassette chromosome recombinase A

NC_021670
(Staphylococcus aureus Bmb9393)

6e-164

35) ccrA
( YP_005743457.1 )

cassette chromosome recombinase A1

NC_017341
(Staphylococcus aureus JKD6008)

6e-164

36) SAT0131_00056
( YP_005751354.1 )

Cassette chromosome recombinase A3

NC_017347
(Staphylococcus aureus T0131)

6e-164

37) ccrA
( YP_005730116.1 )

site-specific recombinase CcrA

NC_017331
(Staphylococcus aureus TW20)

6e-164

38) BN843_350
( YP_007867114.1 )

Cassette chromosome recombinase A

NC_021059
(Staphylococcus aureus M1)

3e-112

39) SE0057
( NP_763612.1 )

cassette chromosome recombinase A

NC_004461
(Staphylococcus epidermidis ATCC 12228)

3e-112

• Sequence Alignments

1) ccrA in NC_002952


> D86934|23|G17|5360824|BAA82194.1|Staphylococcus_aureus_N315|+|25411..26760|ccrA|-|site-specific 
recombinase
Length=449

 Score =  689 bits (2606),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 428/449 (96%), Positives = 441/449 (99%), Gaps = 0/449 (0%)

Query  1    MKQVIGYLRQSTMKQQSLAAQKQAIEAITEKHHIQHINFYSDKQSGRKDNRSGYRQITQL  60
            MKQVIGYLRQSTMKQQSLAAQKQAIEAI+EKHHIQHINFYSDKQSGRKDNRSGYRQ+TQL
Sbjct  1    MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYRVHILSVHDGYFDMDQAFDRFKLNIF  120
            IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTY+VHILSVHDGYFDMDQAFDRFKLNIF
Sbjct  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGTFIINQNESPTVKAVFNY  180
            ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNG+FIINQNESPTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI
Sbjct  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240

Query  241  YEQAQRLRLQKQTKQTPSDNQLKQKIKCPCCNATLTNMTIRKKNHTLRYYVCPKNMNASR  300
            YEQAQRLR QKQ KQT+SDNQLKQKIKCPCCN+TLTNMT+RKKNHTLRYYVCPKNMNASR
Sbjct  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300

Query  301  FVCDFKGINAQTLEDKVLEVCRDFYQNQRIYTKIKSAIDKRIKRQRNIEKHHTLTQKQLI  360
            FVCDFKGINAQTLEDKVLEVC+DFYQNQRIYTKIK+AIDKRIKRQRNIEKHHTLTQ QLI
Sbjct  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHqiqntiqniiqKRFTLNMLYPYIDEIL  420
            EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQ+TIQNIIQKRFTLN+LYPYI+ I 
Sbjct  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIH  420

Query  421  ITKSKTLMGIYFKNEPLNIVNQTTQSSIA  449
            ITK K L+GIYFKNEPLNIVNQT QSSIA
Sbjct  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449

2) SERP2498 in NC_002976


> D86934|23|G17|5360824|BAA82194.1|Staphylococcus_aureus_N315|+|25411..26760|ccrA|-|site-specific 
recombinase
Length=449

 Score =  689 bits (2606),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 428/449 (96%), Positives = 441/449 (99%), Gaps = 0/449 (0%)

Query  1    MKQVIGYLRQSTMKQQSLAAQKQAIEAITEKHHIQHINFYSDKQSGRKDNRSGYRQITQL  60
            MKQVIGYLRQSTMKQQSLAAQKQAIEAI+EKHHIQHINFYSDKQSGRKDNRSGYRQ+TQL
Sbjct  1    MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYRVHILSVHDGYFDMDQAFDRFKLNIF  120
            IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTY+VHILSVHDGYFDMDQAFDRFKLNIF
Sbjct  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGTFIINQNESPTVKAVFNY  180
            ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNG+FIINQNESPTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI
Sbjct  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240

Query  241  YEQAQRLRLQKQTKQTPSDNQLKQKIKCPCCNATLTNMTIRKKNHTLRYYVCPKNMNASR  300
            YEQAQRLR QKQ KQT+SDNQLKQKIKCPCCN+TLTNMT+RKKNHTLRYYVCPKNMNASR
Sbjct  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300

Query  301  FVCDFKGINAQTLEDKVLEVCRDFYQNQRIYTKIKSAIDKRIKRQRNIEKHHTLTQKQLI  360
            FVCDFKGINAQTLEDKVLEVC+DFYQNQRIYTKIK+AIDKRIKRQRNIEKHHTLTQ QLI
Sbjct  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHqiqntiqniiqKRFTLNMLYPYIDEIL  420
            EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQ+TIQNIIQKRFTLN+LYPYI+ I 
Sbjct  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIH  420

Query  421  ITKSKTLMGIYFKNEPLNIVNQTTQSSIA  449
            ITK K L+GIYFKNEPLNIVNQT QSSIA
Sbjct  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449

3) ccrA in NC_017340


> D86934|23|G17|5360824|BAA82194.1|Staphylococcus_aureus_N315|+|25411..26760|ccrA|-|site-specific 
recombinase
Length=449

 Score =  683 bits (2581),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 449/449 (100%), Positives = 449/449 (100%), Gaps = 0/449 (0%)

Query  1    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60
            MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQMTQL
Sbjct  1    MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120
            IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF
Sbjct  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180
            ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI
Sbjct  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240

Query  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300
            YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR
Sbjct  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300

Query  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360
            FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI
Sbjct  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSinghqiqhtiqniiqKRFTLNILYPYIETIH  420
            EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIH
Sbjct  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIH  420

Query  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449
            ITKDKNLIGIYFKNEPLNIVNQTMQSSIA
Sbjct  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449

4) CA347_59 in NC_021554


> D86934|23|G17|5360824|BAA82194.1|Staphylococcus_aureus_N315|+|25411..26760|ccrA|-|site-specific 
recombinase
Length=449

 Score =  683 bits (2581),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 449/449 (100%), Positives = 449/449 (100%), Gaps = 0/449 (0%)

Query  1    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60
            MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQMTQL
Sbjct  1    MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120
            IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF
Sbjct  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180
            ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI
Sbjct  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240

Query  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300
            YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR
Sbjct  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300

Query  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360
            FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI
Sbjct  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSinghqiqhtiqniiqKRFTLNILYPYIETIH  420
            EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIH
Sbjct  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIH  420

Query  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449
            ITKDKNLIGIYFKNEPLNIVNQTMQSSIA
Sbjct  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449

5) SaurJH1_0050 in NC_009632


> D86934|23|G17|5360824|BAA82194.1|Staphylococcus_aureus_N315|+|25411..26760|ccrA|-|site-specific 
recombinase
Length=449

 Score =  683 bits (2581),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 449/449 (100%), Positives = 449/449 (100%), Gaps = 0/449 (0%)

Query  1    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60
            MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQMTQL
Sbjct  1    MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120
            IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF
Sbjct  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180
            ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI
Sbjct  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240

Query  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300
            YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR
Sbjct  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300

Query  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360
            FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI
Sbjct  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSinghqiqhtiqniiqKRFTLNILYPYIETIH  420
            EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIH
Sbjct  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIH  420

Query  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449
            ITKDKNLIGIYFKNEPLNIVNQTMQSSIA
Sbjct  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449

6) SaurJH9_0049 in NC_009487


> D86934|23|G17|5360824|BAA82194.1|Staphylococcus_aureus_N315|+|25411..26760|ccrA|-|site-specific 
recombinase
Length=449

 Score =  683 bits (2581),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 449/449 (100%), Positives = 449/449 (100%), Gaps = 0/449 (0%)

Query  1    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60
            MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQMTQL
Sbjct  1    MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120
            IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF
Sbjct  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180
            ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI
Sbjct  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240

Query  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300
            YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR
Sbjct  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300

Query  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360
            FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI
Sbjct  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSinghqiqhtiqniiqKRFTLNILYPYIETIH  420
            EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIH
Sbjct  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIH  420

Query  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449
            ITKDKNLIGIYFKNEPLNIVNQTMQSSIA
Sbjct  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449

7) ccrA in NC_009782


> D86934|23|G17|5360824|BAA82194.1|Staphylococcus_aureus_N315|+|25411..26760|ccrA|-|site-specific 
recombinase
Length=449

 Score =  683 bits (2581),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 449/449 (100%), Positives = 449/449 (100%), Gaps = 0/449 (0%)

Query  1    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60
            MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQMTQL
Sbjct  1    MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120
            IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF
Sbjct  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180
            ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI
Sbjct  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240

Query  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300
            YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR
Sbjct  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300

Query  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360
            FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI
Sbjct  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSinghqiqhtiqniiqKRFTLNILYPYIETIH  420
            EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIH
Sbjct  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIH  420

Query  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449
            ITKDKNLIGIYFKNEPLNIVNQTMQSSIA
Sbjct  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449

8) ccrA in NC_002758


> D86934|23|G17|5360824|BAA82194.1|Staphylococcus_aureus_N315|+|25411..26760|ccrA|-|site-specific 
recombinase
Length=449

 Score =  683 bits (2581),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 449/449 (100%), Positives = 449/449 (100%), Gaps = 0/449 (0%)

Query  1    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60
            MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQMTQL
Sbjct  1    MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120
            IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF
Sbjct  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180
            ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI
Sbjct  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240

Query  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300
            YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR
Sbjct  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300

Query  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360
            FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI
Sbjct  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSinghqiqhtiqniiqKRFTLNILYPYIETIH  420
            EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIH
Sbjct  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIH  420

Query  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449
            ITKDKNLIGIYFKNEPLNIVNQTMQSSIA
Sbjct  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449

9) ccrA in NC_002745


> D86934|23|G17|5360824|BAA82194.1|Staphylococcus_aureus_N315|+|25411..26760|ccrA|-|site-specific 
recombinase
Length=449

 Score =  683 bits (2581),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 449/449 (100%), Positives = 449/449 (100%), Gaps = 0/449 (0%)

Query  1    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60
            MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQMTQL
Sbjct  1    MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120
            IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF
Sbjct  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180
            ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI
Sbjct  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240

Query  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300
            YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR
Sbjct  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300

Query  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360
            FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI
Sbjct  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSinghqiqhtiqniiqKRFTLNILYPYIETIH  420
            EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIH
Sbjct  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIH  420

Query  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449
            ITKDKNLIGIYFKNEPLNIVNQTMQSSIA
Sbjct  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449

10) ccrA in NC_022443


> D86934|23|G17|5360824|BAA82194.1|Staphylococcus_aureus_N315|+|25411..26760|ccrA|-|site-specific 
recombinase
Length=449

 Score =  674 bits (2547),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 441/449 (99%), Positives = 446/449 (99%), Gaps = 0/449 (0%)

Query  1    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQVTQL  60
            MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQ+TQL
Sbjct  1    MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120
            IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF
Sbjct  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYDYHNGTFIINQNESPTVKAVFNY  180
            ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGY+YHNG+FIINQNESPTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI
Sbjct  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240

Query  241  YEQAQRLRLQKQTKQTSSDNQLKQKIKCPCCNATLTNMTVRKKNHILRYYVCPKNMNASR  300
            YEQAQRLR QKQ KQTSSDNQLKQKIKCPCCN+TLTNMTVRKKNH LRYYVCPKNMNASR
Sbjct  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300

Query  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360
            FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI
Sbjct  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLHQQPQRTTSinghqiqhtiqniiqKRFTLNILYPYIETIH  420
            EKLAQGIIDAETFREQTQSL+QQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIH
Sbjct  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIH  420

Query  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449
            ITKDKNLIGIYFKNEPLNIVNQTMQSSIA
Sbjct  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449

11) ccrA in NC_017763


> D86934|23|G17|5360824|BAA82194.1|Staphylococcus_aureus_N315|+|25411..26760|ccrA|-|site-specific 
recombinase
Length=449

 Score =  674 bits (2549),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 438/449 (98%), Positives = 447/449 (99%), Gaps = 0/449 (0%)

Query  1    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQITQL  60
            MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQ+TQL
Sbjct  1    MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRLKLNIF  120
            IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDR+KLNIF
Sbjct  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYDYHHGTFIINQNESPTVKAVFNY  180
            ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGY+YH+G+FIINQNESPTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI
Sbjct  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240

Query  241  YEQAQRLRSQKQTKQTSSDNQLKQKIKCPCCNATLTNMTIRKKNHTLRYYVCPKNMNASR  300
            YEQAQRLRSQKQ KQTSSDNQLKQKIKCPCCN+TLTNMT+RKKNHTLRYYVCPKNMNASR
Sbjct  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300

Query  301  FVCDFKGINAQTLEDKVLEVCRDFYQNQRIYTKIKSAIDKRIKRQRNIEKHHTLTQEQLI  360
            FVCDFKGINAQTLEDKVLEVC+DFYQNQRIYTKIK+AIDKRIKRQRNIEKHHTLTQEQLI
Sbjct  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSinghqiqhiiqniiqKRFTLNILYPYIETIH  420
            EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQH IQNIIQKRFTLNILYPYIETIH
Sbjct  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIH  420

Query  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449
            ITKDKNLIGIYFKNEPLNIVNQTMQSSIA
Sbjct  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449

12) SE0037 in NC_004461


> D86934|23|G17|5360824|BAA82194.1|Staphylococcus_aureus_N315|+|25411..26760|ccrA|-|site-specific 
recombinase
Length=449

 Score =  673 bits (2545),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 439/449 (98%), Positives = 447/449 (99%), Gaps = 0/449 (0%)

Query  1    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQVTQL  60
            MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQ+TQL
Sbjct  1    MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRLKLNIF  120
            IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDR+KLNIF
Sbjct  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYDYHNGTFIINQNESPTVKAVFNY  180
            ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGY+YHNG+FIINQNESPTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI
Sbjct  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240

Query  241  YEQAQRLRSQKQTKQTSSDNQLKQKIKCPCCNATLTNMTIRKKNHTLRYYVCPKNMNASR  300
            YEQAQRLRSQKQ KQTSSDNQLKQKIKCPCCN+TLTNMT+RKKNHTLRYYVCPKNMNASR
Sbjct  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300

Query  301  FVCDFKGINAQTLEDKVLEVCRDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHILTQEQLI  360
            FVCDFKGINAQTLEDKVLEVC+DFYQNQRIYTKIKGAIDKRIKRQRNIEKHH LTQEQLI
Sbjct  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSinghqiqhtiqniiqKRFTLNILYPYIETIH  420
            EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIH
Sbjct  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIH  420

Query  421  ITKDKNLIGIYFKNEPLNIVNQAMQSSIA  449
            ITKDKNLIGIYFKNEPLNIVNQ+MQSSIA
Sbjct  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449

13) MS7_0070 in NC_017351


> D86934|23|G17|5360824|BAA82194.1|Staphylococcus_aureus_N315|+|25411..26760|ccrA|-|site-specific 
recombinase
Length=449

 Score =  672 bits (2539),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 438/449 (98%), Positives = 446/449 (99%), Gaps = 0/449 (0%)

Query  1    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQITQL  60
            MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQ+TQL
Sbjct  1    MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRLKLNIF  120
            IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDR+KLNIF
Sbjct  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGTFIINQNESPTVKAVFNY  180
            ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNG+FIINQNESPTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI
Sbjct  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240

Query  241  YEQAQRLRLQKQTKQTPSDNQLKQKIKCPCCNATLTNMTIRKKNHTLRYYVCPKNMNASR  300
            YEQAQRLR QKQ KQT+SDNQLKQKIKCPCCN+TLTNMT+RKKNHTLRYYVCPKNMNASR
Sbjct  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300

Query  301  FVCDFKGINAQTLEDKVLEVCRDFYQNQRIYTKIKSAIDKRIKRQRNIEKHHTLTQEQLI  360
            FVCDFKGINAQTLEDKVLEVC+DFYQNQRIYTKIK+AIDKRIKRQRNIEKHHTLTQEQLI
Sbjct  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSinghqiqhiiqniiqKRFTLNILYPYIETIH  420
            EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQH IQNIIQKRFTLNILYPYIETIH
Sbjct  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIH  420

Query  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449
            ITKDKNLIGIYFKNEPLNIVNQTMQSSIA
Sbjct  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449

14) ccrA in NC_017338


> D86934|23|G17|5360824|BAA82194.1|Staphylococcus_aureus_N315|+|25411..26760|ccrA|-|site-specific 
recombinase
Length=449

 Score =  672 bits (2539),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 438/449 (98%), Positives = 446/449 (99%), Gaps = 0/449 (0%)

Query  1    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQITQL  60
            MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQ+TQL
Sbjct  1    MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRLKLNIF  120
            IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDR+KLNIF
Sbjct  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGTFIINQNESPTVKAVFNY  180
            ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNG+FIINQNESPTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI
Sbjct  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240

Query  241  YEQAQRLRLQKQTKQTPSDNQLKQKIKCPCCNATLTNMTIRKKNHTLRYYVCPKNMNASR  300
            YEQAQRLR QKQ KQT+SDNQLKQKIKCPCCN+TLTNMT+RKKNHTLRYYVCPKNMNASR
Sbjct  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300

Query  301  FVCDFKGINAQTLEDKVLEVCRDFYQNQRIYTKIKSAIDKRIKRQRNIEKHHTLTQEQLI  360
            FVCDFKGINAQTLEDKVLEVC+DFYQNQRIYTKIK+AIDKRIKRQRNIEKHHTLTQEQLI
Sbjct  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSinghqiqhiiqniiqKRFTLNILYPYIETIH  420
            EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQH IQNIIQKRFTLNILYPYIETIH
Sbjct  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIH  420

Query  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449
            ITKDKNLIGIYFKNEPLNIVNQTMQSSIA
Sbjct  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449

15) SAMSHR1132_00410 in NC_016941


> D86934|23|G17|5360824|BAA82194.1|Staphylococcus_aureus_N315|+|25411..26760|ccrA|-|site-specific 
recombinase
Length=449

 Score =  672 bits (2539),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 438/449 (98%), Positives = 446/449 (99%), Gaps = 0/449 (0%)

Query  1    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQITQL  60
            MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQ+TQL
Sbjct  1    MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRLKLNIF  120
            IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDR+KLNIF
Sbjct  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGTFIINQNESPTVKAVFNY  180
            ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNG+FIINQNESPTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI
Sbjct  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240

Query  241  YEQAQRLRLQKQTKQTPSDNQLKQKIKCPCCNATLTNMTIRKKNHTLRYYVCPKNMNASR  300
            YEQAQRLR QKQ KQT+SDNQLKQKIKCPCCN+TLTNMT+RKKNHTLRYYVCPKNMNASR
Sbjct  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300

Query  301  FVCDFKGINAQTLEDKVLEVCRDFYQNQRIYTKIKSAIDKRIKRQRNIEKHHTLTQEQLI  360
            FVCDFKGINAQTLEDKVLEVC+DFYQNQRIYTKIK+AIDKRIKRQRNIEKHHTLTQEQLI
Sbjct  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSinghqiqhiiqniiqKRFTLNILYPYIETIH  420
            EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQH IQNIIQKRFTLNILYPYIETIH
Sbjct  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIH  420

Query  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449
            ITKDKNLIGIYFKNEPLNIVNQTMQSSIA
Sbjct  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449

16) ccrA in NC_007793


> D86934|23|G17|5360824|BAA82194.1|Staphylococcus_aureus_N315|+|25411..26760|ccrA|-|site-specific 
recombinase
Length=449

 Score =  672 bits (2539),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 438/449 (98%), Positives = 446/449 (99%), Gaps = 0/449 (0%)

Query  1    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQITQL  60
            MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQ+TQL
Sbjct  1    MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRLKLNIF  120
            IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDR+KLNIF
Sbjct  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGTFIINQNESPTVKAVFNY  180
            ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNG+FIINQNESPTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI
Sbjct  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240

Query  241  YEQAQRLRLQKQTKQTPSDNQLKQKIKCPCCNATLTNMTIRKKNHTLRYYVCPKNMNASR  300
            YEQAQRLR QKQ KQT+SDNQLKQKIKCPCCN+TLTNMT+RKKNHTLRYYVCPKNMNASR
Sbjct  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300

Query  301  FVCDFKGINAQTLEDKVLEVCRDFYQNQRIYTKIKSAIDKRIKRQRNIEKHHTLTQEQLI  360
            FVCDFKGINAQTLEDKVLEVC+DFYQNQRIYTKIK+AIDKRIKRQRNIEKHHTLTQEQLI
Sbjct  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSinghqiqhiiqniiqKRFTLNILYPYIETIH  420
            EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQH IQNIIQKRFTLNILYPYIETIH
Sbjct  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIH  420

Query  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449
            ITKDKNLIGIYFKNEPLNIVNQTMQSSIA
Sbjct  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449

17) ccrA in NC_010079


> D86934|23|G17|5360824|BAA82194.1|Staphylococcus_aureus_N315|+|25411..26760|ccrA|-|site-specific 
recombinase
Length=449

 Score =  672 bits (2539),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 438/449 (98%), Positives = 446/449 (99%), Gaps = 0/449 (0%)

Query  1    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQITQL  60
            MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQ+TQL
Sbjct  1    MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRLKLNIF  120
            IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDR+KLNIF
Sbjct  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGTFIINQNESPTVKAVFNY  180
            ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNG+FIINQNESPTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI
Sbjct  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240

Query  241  YEQAQRLRLQKQTKQTPSDNQLKQKIKCPCCNATLTNMTIRKKNHTLRYYVCPKNMNASR  300
            YEQAQRLR QKQ KQT+SDNQLKQKIKCPCCN+TLTNMT+RKKNHTLRYYVCPKNMNASR
Sbjct  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300

Query  301  FVCDFKGINAQTLEDKVLEVCRDFYQNQRIYTKIKSAIDKRIKRQRNIEKHHTLTQEQLI  360
            FVCDFKGINAQTLEDKVLEVC+DFYQNQRIYTKIK+AIDKRIKRQRNIEKHHTLTQEQLI
Sbjct  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSinghqiqhiiqniiqKRFTLNILYPYIETIH  420
            EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQH IQNIIQKRFTLNILYPYIETIH
Sbjct  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIH  420

Query  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449
            ITKDKNLIGIYFKNEPLNIVNQTMQSSIA
Sbjct  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449

18) BN843_710 in NC_021059


> D86934|23|G17|5360824|BAA82194.1|Staphylococcus_aureus_N315|+|25411..26760|ccrA|-|site-specific 
recombinase
Length=449

 Score =  671 bits (2536),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 438/449 (98%), Positives = 446/449 (99%), Gaps = 0/449 (0%)

Query  1    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60
            MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQMTQL
Sbjct  1    MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYRVHILSVHDGYFDMDQAFDRLKLNIF  120
            IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTY+VHILSVHDGYFDMDQAFDR+KLNIF
Sbjct  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYDYHNGTFIINQNESPTVKAVFNY  180
            ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGY+YHNG+FIINQNESPTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI
Sbjct  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240

Query  241  YEQAQRLRLQKQTKQTSSDNQLKQKIKCPCCNATLTNMTIRKKNHTLRYYVCPKNMNASR  300
            YEQAQRLR QKQ KQTSSDNQLKQKIKCPCCN+TLTNMT+RKKNHTLRYYVCPKNMNASR
Sbjct  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300

Query  301  FVCDFKGINAQTLEDKVLEVCRDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHILTQEQLI  360
            FVCDFKGINAQTLEDKVLEVC+DFYQNQRIYTKIKGAIDKRIKRQRNIEKHH LTQEQLI
Sbjct  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSinghqiqhtiqniiqKRFTLNILYPYIETIH  420
            EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIH
Sbjct  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIH  420

Query  421  ITKDKNLIGIYFKNEPLNIVNQAMQSSIA  449
            ITKDKNLIGIYFKNEPLNIVNQ+MQSSIA
Sbjct  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449

19) ccrA in NC_017342


> D86934|23|G17|5360824|BAA82194.1|Staphylococcus_aureus_N315|+|25411..26760|ccrA|-|site-specific 
recombinase
Length=449

 Score =  671 bits (2537),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 437/449 (98%), Positives = 446/449 (99%), Gaps = 0/449 (0%)

Query  7    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQMTQL  66
            MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQMTQL
Sbjct  1    MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60

Query  67   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYRVHILSVHDGYFDMDQAFDRLKLNIF  126
            IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTY+VHILSVHDGYFDMDQAFDR+KLNIF
Sbjct  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120

Query  127  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYDYHNGTFIINQNESPTVKAVFNY  186
            ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGY+YHNG+FIINQNESPTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180

Query  187  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  246
            YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI
Sbjct  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240

Query  247  YEQAQRLRLQKQTKQTPSDNQLKQKIKCPCCNATLTNMTIRKKNHTLRYYVCPKNMNASR  306
            YEQAQRLR QKQ KQT+SDNQLKQKIKCPCCN+TLTNMT+RKKNHTLRYYVCPKNMNASR
Sbjct  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300

Query  307  FVCDFKGINAQTLEDKVLEVCRDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHILTQEQLI  366
            FVCDFKGINAQTLEDKVLEVC+DFYQNQRIYTKIKGAIDKRIKRQRNIEKHH LTQEQLI
Sbjct  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360

Query  367  EKLAQGIIDAETFREQTQSLRQQPQRTTSinghqiqhtiqniiqKRFTLNILYPYIETIH  426
            EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIH
Sbjct  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIH  420

Query  427  ITKDKNLIGIYFKNEPLNIVNQAMQSSIA  455
            ITKDKNLIGIYFKNEPLNIVNQ+MQSSIA
Sbjct  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449

20) ccrA in NC_003923


> D86934|23|G17|5360824|BAA82194.1|Staphylococcus_aureus_N315|+|25411..26760|ccrA|-|site-specific 
recombinase
Length=449

 Score =  668 bits (2526),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 429/449 (96%), Positives = 441/449 (99%), Gaps = 0/449 (0%)

Query  1    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQITQL  60
            MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQ+TQL
Sbjct  1    MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRLKLNIF  120
            IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDR+KLNIF
Sbjct  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGTFIINQNESPTVKAVFNY  180
            ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNG+FIINQNESPTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI
Sbjct  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240

Query  241  YEQAQRLRLQKQTKQTPSDNQLKQKIKCPCCNATLTNMTIRKKNHTLRYYVCPKNMNASR  300
            YEQAQRLR QKQ KQT+SDNQLKQKIKCPCCN+TLTNMT+RKKNHTLRYYVCPKNMNASR
Sbjct  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300

Query  301  FVCDFKGINAQTLEDKVLEVCRDFYQNQRIYTKIKSAIDKRIKRQRNIEKHHTLTQKQLI  360
            FVCDFKGINAQTLEDKVLEVC+DFYQNQRIYTKIK+AIDKRIKRQRNIEKHHTLTQ QLI
Sbjct  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHqiqntiqniiqKRFTLNMLYPYIDEIL  420
            EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQ+TIQNIIQKRFTLN+LYPYI+ I 
Sbjct  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIH  420

Query  421  ITKSKTLMGIYFKNEPLNIVNQTTQSSIA  449
            ITK K L+GIYFKNEPLNIVNQT QSSIA
Sbjct  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449

21) SAKOR_00048 in NC_022226


> D86934|23|G17|5360824|BAA82194.1|Staphylococcus_aureus_N315|+|25411..26760|ccrA|-|site-specific 
recombinase
Length=449

 Score =  666 bits (2516),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 429/449 (96%), Positives = 440/449 (98%), Gaps = 0/449 (0%)

Query  7    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQLTQL  66
            MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQ+TQL
Sbjct  1    MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60

Query  67   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRLKLNIF  126
            IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDR+KLNIF
Sbjct  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120

Query  127  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYDYHNGTFIINQNESPTVKAVFNY  186
            ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGY+YHNG+FIINQNESPTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180

Query  187  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  246
            YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI
Sbjct  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240

Query  247  YEQAQRLRSQKQTKQTSSDNQLKQKIKCPCCNATLTNMTVRKKNHILRYYVCPKNMNASR  306
            YEQAQRLRSQKQ KQTSSDNQLKQKIKCPCCN+TLTNMTVRKKNH LRYYVCPKNMNASR
Sbjct  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300

Query  307  FVCDFKGINAQTLEDKVLKVCQDFYQDQHIYVKIKNAIDKRIKRQRNIEKHHTLTQEQLI  366
            FVCDFKGINAQTLEDKVL VC+DFYQ+Q+IY KIK AIDKRIKRQRNIEKHHTLTQEQLI
Sbjct  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360

Query  367  EKLAQGIIDAETFRKQMQSLHQQPQRITSISEhqiqhtiqniiqKRFTLNILYPYIETIH  426
            EKLAQGIIDAETFR Q QSL+QQPQR TSI+ HQIQHTIQNIIQKRFTLNILYPYIETIH
Sbjct  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIH  420

Query  427  IAKDKNLIGIYFKNEPLNIVNQTMQSSIA  455
            I+KDKNLIGIYFKNEPLNIVNQTMQSSIA
Sbjct  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449

22) ccrA1 in NC_017349


> D86934|23|G17|5360824|BAA82194.1|Staphylococcus_aureus_N315|+|25411..26760|ccrA|-|site-specific 
recombinase
Length=449

 Score =  606 bits (2291),  Expect = 5e-175, Method: Compositional matrix adjust.
 Identities = 348/449 (78%), Positives = 416/449 (93%), Gaps = 0/449 (0%)

Query  1    MKQAIGYLRQSTLKQQSLSAQKQTIKTLAEKHNIQHIIFYSDKQSGRTENRTGYQQITEL  60
            MKQ IGYLRQST+KQQSL+AQKQ+I ++AEKH+IQHI FYSDKQSGR +NR+GY+Q+T+L
Sbjct  1    MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60

Query  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQTYHVHILSVHDGYFDMNKAFDRLKLNIF  120
            IQQGQCD+LCCYRLNRLHRNLKNALKL+KLCQTYHVHILSVHDGYFDM++AFDR+KLNIF
Sbjct  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120

Query  121  ISLAELESDNIGEQVKNGLREKAKQGKLITTHAPFGYHYHNGTFMINNIEAPTVKAVFSY  180
            ISLAELESDNIGEQV+NGL+EKAKQG+LITTHAPFGY+YHNG+F+IN+ E+PTVKAVF+Y
Sbjct  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180

Query  181  YLQGYGYKKIAQYLEDDEKFINRKPYQVRNIIMNPNYCGRVINQYGRYDNMCPSIVSTSI  240
            Y++G GYKKIAQ LE+D+ +INR+PYQVRNII+NPNYCGRV NQYG++DNM PSIVSTSI
Sbjct  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240

Query  241  YEQAQAIRSQKQLKRTSSANQLKQKIKCPYCGSTLTNITIRKKHRTLRYYVCPQNMNASR  300
            YEQAQ +RSQKQ+K+TSS NQLKQKIKCP C +TLTN+T+RKK++TLRYYVCP+NMNASR
Sbjct  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300

Query  301  FVCEFKGINAQSLEASVLVTCQDFFQNQHLYSKINHTIQKRLKKQKDIEAKSTVTQEQLI  360
            FVC+FKGINAQ+LE  VL  C+DF+QNQ++Y+KI+ +I+KR+K+Q++IE   T+TQEQLI
Sbjct  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360

Query  361  EKLAQGKIDAETFREQTQSFRQQSKPITSIHTHQIQKALQNVIQQSFTLNMLYPYIDEIH  420
            EKLAQG IDAETFREQTQS+RQQ++  TSI+ HQIQ ++QN+IQ+ FTLN+LYPYI+ IH
Sbjct  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIH  420

Query  421  ITKSKTLTGIYFKNEPLNIVNQTAQSSIA  449
            ITK K L GIYFKNEPLNIVNQT QSSIA
Sbjct  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449

23) SSP0036 in NC_007350


> D86934|23|G17|5360824|BAA82194.1|Staphylococcus_aureus_N315|+|25411..26760|ccrA|-|site-specific 
recombinase
Length=449

 Score =  599 bits (2262),  Expect = 1e-172, Method: Compositional matrix adjust.
 Identities = 338/449 (76%), Positives = 407/449 (91%), Gaps = 0/449 (0%)

Query  1    MKQAMGYLRQSTTKQQSLAAQKQTIKVLAEKHNIQHITFYSDKQSGRTDKRNGYQQITEL  60
            MKQ +GYLRQST KQQSLAAQKQ+I  +AEKH+IQHI FYSDKQSGR D+R+GY+Q+T+L
Sbjct  1    MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60

Query  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQTYHVHILSVRDGYFDMNKAFDRLKLNIF  120
            IQQGQCD+LCCYRLNRLHRNLKNALKL+KLCQTYHVHILSV+DGYFDM++AFDR+KLNIF
Sbjct  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120

Query  121  ISLAELESDNIGEQVKNGLREKAKQGKLITTHAPFGYHYHNGTFTIDTVKSPTVKAVFNY  180
            ISLAELESDNIGEQV+NGL+EKAKQG+LITTHAPFGY+YHNG+F I+   SPTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180

Query  181  YLQGYGYKKIAQYLEADNKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240
            Y++G GYKKIAQ LE DN +INR+PYQVRNII+NPNYCGRV NQYGQ++NMFP+IVST+I
Sbjct  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240

Query  241  YEEAQVTRTQKQVKRKPSENQLKQKIKCPYCHSTLTNMTVRKPDHSLRYYVCPQNMNNAR  300
            YE+AQ  R+QKQ+K+ +S+NQLKQKIKCP C++TLTNMTVRK +H+LRYYVCP+NMN +R
Sbjct  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300

Query  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKKQKDIEAKNTLTQEQLI  360
            FVC+FKGINAQ LE  VL  C+DF+QNQ++Y+KI+ +I++R+K+Q++IE  +TLTQEQLI
Sbjct  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360

Query  361  EKLAQGKIDAESFRKQTQSSRQHSKPILSINAYQIQKAFQNIIQQRFTLNMLYPYIDEIH  420
            EKLAQG IDAE+FR QTQS RQ+++   SIN+ QIQ ++QNIIQ+RFTLN+LYPYI+ IH
Sbjct  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIH  420

Query  421  INKNKTLTGIYFKNEPLNIVNQTTQSTIA  449
            I K+K L GIYFKNEPLNIVNQT QS+IA
Sbjct  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449

24) ccrA1 in NC_002951


> D86934|23|G17|5360824|BAA82194.1|Staphylococcus_aureus_N315|+|25411..26760|ccrA|-|site-specific 
recombinase
Length=449

 Score =  598 bits (2259),  Expect = 2e-172, Method: Compositional matrix adjust.
 Identities = 336/449 (75%), Positives = 408/449 (91%), Gaps = 0/449 (0%)

Query  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60
            MKQ IGYLRQST KQQSLAAQKQ+IEA+A KH+IQ I FYSDKQSGR D+R+GY+Q+T+L
Sbjct  1    MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60

Query  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120
            IQQGQCD+LCCYRLNRLHRNLKNALKL+KLCQ YHVHILSVHDGYFDMD+AFDR+KLNIF
Sbjct  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120

Query  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180
            ISLAELESDNIGEQV+NG++EKAKQG++ITTHAPFGY+YHNG+F I+   +PTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180

Query  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240
            Y++G GYKKIAQ LE D+ +INR+PYQVRNII+NPNYCGRV NQYGQ++NMFP+IVST+I
Sbjct  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240

Query  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300
            YE+AQ  R+QK +K+ +S+NQLKQKIKCP C++TLTNMT+RKK+HTLRYYVCP+NMNASR
Sbjct  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300

Query  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360
            FVC+FKGINAQ LE  VL  C+DF+QNQ++Y+KI+ +I++R+KRQR+IE   TL +EQLI
Sbjct  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360

Query  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420
            EKLAQ+ IDAETFREQTQSLRQQ++  +SI+  QI+ ++QNIIQ+RFTLN+LYPYI+ I+
Sbjct  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIH  420

Query  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449
            I+K+K+L GIYFKNEPLNIV+QTM+ SI 
Sbjct  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449

25) ccrA1 in NC_020529


> D86934|23|G17|5360824|BAA82194.1|Staphylococcus_aureus_N315|+|25411..26760|ccrA|-|site-specific 
recombinase
Length=449

 Score =  598 bits (2259),  Expect = 2e-172, Method: Compositional matrix adjust.
 Identities = 336/449 (75%), Positives = 408/449 (91%), Gaps = 0/449 (0%)

Query  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60
            MKQ IGYLRQST KQQSLAAQKQ+IEA+A KH+IQ I FYSDKQSGR D+R+GY+Q+T+L
Sbjct  1    MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60

Query  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120
            IQQGQCD+LCCYRLNRLHRNLKNALKL+KLCQ YHVHILSVHDGYFDMD+AFDR+KLNIF
Sbjct  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120

Query  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180
            ISLAELESDNIGEQV+NG++EKAKQG++ITTHAPFGY+YHNG+F I+   +PTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180

Query  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240
            Y++G GYKKIAQ LE D+ +INR+PYQVRNII+NPNYCGRV NQYGQ++NMFP+IVST+I
Sbjct  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240

Query  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300
            YE+AQ  R+QK +K+ +S+NQLKQKIKCP C++TLTNMT+RKK+HTLRYYVCP+NMNASR
Sbjct  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300

Query  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360
            FVC+FKGINAQ LE  VL  C+DF+QNQ++Y+KI+ +I++R+KRQR+IE   TL +EQLI
Sbjct  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360

Query  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420
            EKLAQ+ IDAETFREQTQSLRQQ++  +SI+  QI+ ++QNIIQ+RFTLN+LYPYI+ I+
Sbjct  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIH  420

Query  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449
            I+K+K+L GIYFKNEPLNIV+QTM+ SI 
Sbjct  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449

26) ccrA1 in NC_020564


> D86934|23|G17|5360824|BAA82194.1|Staphylococcus_aureus_N315|+|25411..26760|ccrA|-|site-specific 
recombinase
Length=449

 Score =  598 bits (2259),  Expect = 2e-172, Method: Compositional matrix adjust.
 Identities = 336/449 (75%), Positives = 408/449 (91%), Gaps = 0/449 (0%)

Query  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60
            MKQ IGYLRQST KQQSLAAQKQ+IEA+A KH+IQ I FYSDKQSGR D+R+GY+Q+T+L
Sbjct  1    MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60

Query  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120
            IQQGQCD+LCCYRLNRLHRNLKNALKL+KLCQ YHVHILSVHDGYFDMD+AFDR+KLNIF
Sbjct  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120

Query  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180
            ISLAELESDNIGEQV+NG++EKAKQG++ITTHAPFGY+YHNG+F I+   +PTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180

Query  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240
            Y++G GYKKIAQ LE D+ +INR+PYQVRNII+NPNYCGRV NQYGQ++NMFP+IVST+I
Sbjct  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240

Query  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300
            YE+AQ  R+QK +K+ +S+NQLKQKIKCP C++TLTNMT+RKK+HTLRYYVCP+NMNASR
Sbjct  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300

Query  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360
            FVC+FKGINAQ LE  VL  C+DF+QNQ++Y+KI+ +I++R+KRQR+IE   TL +EQLI
Sbjct  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360

Query  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420
            EKLAQ+ IDAETFREQTQSLRQQ++  +SI+  QI+ ++QNIIQ+RFTLN+LYPYI+ I+
Sbjct  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIH  420

Query  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449
            I+K+K+L GIYFKNEPLNIV+QTM+ SI 
Sbjct  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449

27) ccrA1 in NC_020532


> D86934|23|G17|5360824|BAA82194.1|Staphylococcus_aureus_N315|+|25411..26760|ccrA|-|site-specific 
recombinase
Length=449

 Score =  598 bits (2259),  Expect = 2e-172, Method: Compositional matrix adjust.
 Identities = 336/449 (75%), Positives = 408/449 (91%), Gaps = 0/449 (0%)

Query  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60
            MKQ IGYLRQST KQQSLAAQKQ+IEA+A KH+IQ I FYSDKQSGR D+R+GY+Q+T+L
Sbjct  1    MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60

Query  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120
            IQQGQCD+LCCYRLNRLHRNLKNALKL+KLCQ YHVHILSVHDGYFDMD+AFDR+KLNIF
Sbjct  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120

Query  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180
            ISLAELESDNIGEQV+NG++EKAKQG++ITTHAPFGY+YHNG+F I+   +PTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180

Query  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240
            Y++G GYKKIAQ LE D+ +INR+PYQVRNII+NPNYCGRV NQYGQ++NMFP+IVST+I
Sbjct  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240

Query  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300
            YE+AQ  R+QK +K+ +S+NQLKQKIKCP C++TLTNMT+RKK+HTLRYYVCP+NMNASR
Sbjct  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300

Query  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360
            FVC+FKGINAQ LE  VL  C+DF+QNQ++Y+KI+ +I++R+KRQR+IE   TL +EQLI
Sbjct  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360

Query  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420
            EKLAQ+ IDAETFREQTQSLRQQ++  +SI+  QI+ ++QNIIQ+RFTLN+LYPYI+ I+
Sbjct  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIH  420

Query  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449
            I+K+K+L GIYFKNEPLNIV+QTM+ SI 
Sbjct  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449

28) ccrA1 in NC_020533


> D86934|23|G17|5360824|BAA82194.1|Staphylococcus_aureus_N315|+|25411..26760|ccrA|-|site-specific 
recombinase
Length=449

 Score =  598 bits (2259),  Expect = 2e-172, Method: Compositional matrix adjust.
 Identities = 336/449 (75%), Positives = 408/449 (91%), Gaps = 0/449 (0%)

Query  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60
            MKQ IGYLRQST KQQSLAAQKQ+IEA+A KH+IQ I FYSDKQSGR D+R+GY+Q+T+L
Sbjct  1    MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60

Query  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120
            IQQGQCD+LCCYRLNRLHRNLKNALKL+KLCQ YHVHILSVHDGYFDMD+AFDR+KLNIF
Sbjct  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120

Query  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180
            ISLAELESDNIGEQV+NG++EKAKQG++ITTHAPFGY+YHNG+F I+   +PTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180

Query  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240
            Y++G GYKKIAQ LE D+ +INR+PYQVRNII+NPNYCGRV NQYGQ++NMFP+IVST+I
Sbjct  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240

Query  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300
            YE+AQ  R+QK +K+ +S+NQLKQKIKCP C++TLTNMT+RKK+HTLRYYVCP+NMNASR
Sbjct  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300

Query  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360
            FVC+FKGINAQ LE  VL  C+DF+QNQ++Y+KI+ +I++R+KRQR+IE   TL +EQLI
Sbjct  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360

Query  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420
            EKLAQ+ IDAETFREQTQSLRQQ++  +SI+  QI+ ++QNIIQ+RFTLN+LYPYI+ I+
Sbjct  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIH  420

Query  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449
            I+K+K+L GIYFKNEPLNIV+QTM+ SI 
Sbjct  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449

29) ccrA1 in NC_020537


> D86934|23|G17|5360824|BAA82194.1|Staphylococcus_aureus_N315|+|25411..26760|ccrA|-|site-specific 
recombinase
Length=449

 Score =  598 bits (2259),  Expect = 2e-172, Method: Compositional matrix adjust.
 Identities = 336/449 (75%), Positives = 408/449 (91%), Gaps = 0/449 (0%)

Query  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60
            MKQ IGYLRQST KQQSLAAQKQ+IEA+A KH+IQ I FYSDKQSGR D+R+GY+Q+T+L
Sbjct  1    MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60

Query  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120
            IQQGQCD+LCCYRLNRLHRNLKNALKL+KLCQ YHVHILSVHDGYFDMD+AFDR+KLNIF
Sbjct  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120

Query  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180
            ISLAELESDNIGEQV+NG++EKAKQG++ITTHAPFGY+YHNG+F I+   +PTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180

Query  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240
            Y++G GYKKIAQ LE D+ +INR+PYQVRNII+NPNYCGRV NQYGQ++NMFP+IVST+I
Sbjct  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240

Query  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300
            YE+AQ  R+QK +K+ +S+NQLKQKIKCP C++TLTNMT+RKK+HTLRYYVCP+NMNASR
Sbjct  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300

Query  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360
            FVC+FKGINAQ LE  VL  C+DF+QNQ++Y+KI+ +I++R+KRQR+IE   TL +EQLI
Sbjct  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360

Query  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420
            EKLAQ+ IDAETFREQTQSLRQQ++  +SI+  QI+ ++QNIIQ+RFTLN+LYPYI+ I+
Sbjct  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIH  420

Query  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449
            I+K+K+L GIYFKNEPLNIV+QTM+ SI 
Sbjct  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449

30) ccrA1 in NC_020566


> D86934|23|G17|5360824|BAA82194.1|Staphylococcus_aureus_N315|+|25411..26760|ccrA|-|site-specific 
recombinase
Length=449

 Score =  598 bits (2259),  Expect = 2e-172, Method: Compositional matrix adjust.
 Identities = 336/449 (75%), Positives = 408/449 (91%), Gaps = 0/449 (0%)

Query  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60
            MKQ IGYLRQST KQQSLAAQKQ+IEA+A KH+IQ I FYSDKQSGR D+R+GY+Q+T+L
Sbjct  1    MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60

Query  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120
            IQQGQCD+LCCYRLNRLHRNLKNALKL+KLCQ YHVHILSVHDGYFDMD+AFDR+KLNIF
Sbjct  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120

Query  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180
            ISLAELESDNIGEQV+NG++EKAKQG++ITTHAPFGY+YHNG+F I+   +PTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180

Query  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240
            Y++G GYKKIAQ LE D+ +INR+PYQVRNII+NPNYCGRV NQYGQ++NMFP+IVST+I
Sbjct  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240

Query  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300
            YE+AQ  R+QK +K+ +S+NQLKQKIKCP C++TLTNMT+RKK+HTLRYYVCP+NMNASR
Sbjct  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300

Query  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360
            FVC+FKGINAQ LE  VL  C+DF+QNQ++Y+KI+ +I++R+KRQR+IE   TL +EQLI
Sbjct  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360

Query  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420
            EKLAQ+ IDAETFREQTQSLRQQ++  +SI+  QI+ ++QNIIQ+RFTLN+LYPYI+ I+
Sbjct  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIH  420

Query  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449
            I+K+K+L GIYFKNEPLNIV+QTM+ SI 
Sbjct  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449

31) ccrA1 in NC_020536


> D86934|23|G17|5360824|BAA82194.1|Staphylococcus_aureus_N315|+|25411..26760|ccrA|-|site-specific 
recombinase
Length=449

 Score =  598 bits (2259),  Expect = 2e-172, Method: Compositional matrix adjust.
 Identities = 336/449 (75%), Positives = 408/449 (91%), Gaps = 0/449 (0%)

Query  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60
            MKQ IGYLRQST KQQSLAAQKQ+IEA+A KH+IQ I FYSDKQSGR D+R+GY+Q+T+L
Sbjct  1    MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60

Query  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120
            IQQGQCD+LCCYRLNRLHRNLKNALKL+KLCQ YHVHILSVHDGYFDMD+AFDR+KLNIF
Sbjct  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120

Query  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180
            ISLAELESDNIGEQV+NG++EKAKQG++ITTHAPFGY+YHNG+F I+   +PTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180

Query  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240
            Y++G GYKKIAQ LE D+ +INR+PYQVRNII+NPNYCGRV NQYGQ++NMFP+IVST+I
Sbjct  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240

Query  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300
            YE+AQ  R+QK +K+ +S+NQLKQKIKCP C++TLTNMT+RKK+HTLRYYVCP+NMNASR
Sbjct  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300

Query  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360
            FVC+FKGINAQ LE  VL  C+DF+QNQ++Y+KI+ +I++R+KRQR+IE   TL +EQLI
Sbjct  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360

Query  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420
            EKLAQ+ IDAETFREQTQSLRQQ++  +SI+  QI+ ++QNIIQ+RFTLN+LYPYI+ I+
Sbjct  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIH  420

Query  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449
            I+K+K+L GIYFKNEPLNIV+QTM+ SI 
Sbjct  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449

32) ccrA1 in NC_020568


> D86934|23|G17|5360824|BAA82194.1|Staphylococcus_aureus_N315|+|25411..26760|ccrA|-|site-specific 
recombinase
Length=449

 Score =  598 bits (2259),  Expect = 2e-172, Method: Compositional matrix adjust.
 Identities = 336/449 (75%), Positives = 408/449 (91%), Gaps = 0/449 (0%)

Query  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60
            MKQ IGYLRQST KQQSLAAQKQ+IEA+A KH+IQ I FYSDKQSGR D+R+GY+Q+T+L
Sbjct  1    MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60

Query  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120
            IQQGQCD+LCCYRLNRLHRNLKNALKL+KLCQ YHVHILSVHDGYFDMD+AFDR+KLNIF
Sbjct  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120

Query  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180
            ISLAELESDNIGEQV+NG++EKAKQG++ITTHAPFGY+YHNG+F I+   +PTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180

Query  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240
            Y++G GYKKIAQ LE D+ +INR+PYQVRNII+NPNYCGRV NQYGQ++NMFP+IVST+I
Sbjct  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240

Query  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300
            YE+AQ  R+QK +K+ +S+NQLKQKIKCP C++TLTNMT+RKK+HTLRYYVCP+NMNASR
Sbjct  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300

Query  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360
            FVC+FKGINAQ LE  VL  C+DF+QNQ++Y+KI+ +I++R+KRQR+IE   TL +EQLI
Sbjct  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360

Query  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420
            EKLAQ+ IDAETFREQTQSLRQQ++  +SI+  QI+ ++QNIIQ+RFTLN+LYPYI+ I+
Sbjct  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIH  420

Query  421  ISKNKSLAGIYFKNEPLNIVKQTMELSIV  449
            I+K+K+L GIYFKNEPLNIV+QTM+ SI 
Sbjct  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449

33) ccrA1 in NC_002953


> D86934|23|G17|5360824|BAA82194.1|Staphylococcus_aureus_N315|+|25411..26760|ccrA|-|site-specific 
recombinase
Length=449

 Score =  595 bits (2248),  Expect = 1e-171, Method: Compositional matrix adjust.
 Identities = 335/449 (75%), Positives = 409/449 (92%), Gaps = 0/449 (0%)

Query  1    MKQAIGYLRQSTTKQQSLAAQKQTIKALAEKHNIQHITFYSDKQSGRTDKRNGYQQITEL  60
            MKQ IGYLRQST KQQSLAAQKQ+I A+AEKH+IQHI FYSDKQSGR D+R+GY+Q+T+L
Sbjct  1    MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60

Query  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQTYHVHILSVHDGYFDMDKAFDRLKLNIF  120
            IQQGQCD+LCCYRLNRLHRNLKNALKL+KLCQTYHVHILSVHDGYFDMD+AFDR+KLNIF
Sbjct  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120

Query  121  ISLAELESDNIGEQVKNGIKEKARQGKLITTHAPFGYHYHNGTFTIDTVKSPTVKAVFNY  180
            ISLAELESDNIGEQV+NG++EKA+QG+LITTHAPFGY+YHNG+F I+   SPTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180

Query  181  YLQGYGYKKIAQYLEADDNFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240
            Y++G GYKKIAQ LE D+ +INR+PYQVRNII+NPNYCGRV NQYGQ++NMFP+IVST+I
Sbjct  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240

Query  241  YEEAQVTRTQKQVKCKPSENQLKQKIKCPYCHSTLTNMTVRKPDHSLRYYVCPQNMNNAR  300
            YE+AQ  R+QKQ+K  +S+NQLKQKIKCP C++TLTNMTVRK +H+LRYYVCP+NMN +R
Sbjct  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300

Query  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIEIKTTLNHEQLI  360
            FVC+FKGINAQ LE  VL  C+DF+QNQ++Y+KI+ +I++R+KRQR+IE   TL +EQLI
Sbjct  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360

Query  361  EKLAQGKIDAETFKEQTHSLHQQSKPISSISAYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420
            EKLAQG IDAETF+EQT+SL+QQ++  +SI++ QI+ ++QNIIQ+RFTLN+LYPYI+ I+
Sbjct  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIH  420

Query  421  ISKNKSLAGIYFKNEPLNIVKQTMKLSIV  449
            I+K+K+L GIYFKNEPLNIV+QTM+ SI 
Sbjct  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449

34) ccrA in NC_021670


> D86934|23|G17|5360824|BAA82194.1|Staphylococcus_aureus_N315|+|25411..26760|ccrA|-|site-specific 
recombinase
Length=449

 Score =  570 bits (2151),  Expect = 6e-164, Method: Compositional matrix adjust.
 Identities = 325/449 (73%), Positives = 404/449 (90%), Gaps = 1/449 (0%)

Query  1    MKRAIGYLRQSTTKQQSLPAQKQAIELLAPKHNIQNIQYISDKQSGRTDNRTGYQQVTER  60
            MK+ IGYLRQST KQQSL+AQKQAIE +A KH+IQ+I++ SDKQSGR DNR+GY+Q+T+ 
Sbjct  1    MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60

Query  61   IQQRQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120
            IQQ QCD+LCCYRLNRLHRNLKNALKL+KLCQ YHVHILSVHDGYFDMD+AFDR+KLNIF
Sbjct  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120

Query  121  MSLAELESDNIGEQVKNGLREKAKQGKLITTHAPFGYHYQNGTFIINNDESPTVKAVFNY  180
            +SLAELESDNIGEQV+NGL+EKAKQG+LITTHAPFGY+Y+NG+FIIN++ESPTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180

Query  181  YLQGYGYKKIAQYLEDDNKLITRKPYQVRNIIMNPNYCGRVINQYGQYNNMVPPIVSATK  240
            Y++G GYKKIAQ LE+DN  I R+PYQVRNII+NPNYCGRV NQYGQ++NM P+IVS++ 
Sbjct  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240

Query  241  YEHAQAIRNKKQLHCIPSENQLKQKIKCPCCDSTLTNMTIRKK-HTLRYYICPKNMNESR  299
            YE+AQ +R++KQ+   +S+NQLKQKIKCPCC++TLTNMT+RKK HTLRYY+CPKNMN SR
Sbjct  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300

Query  300  FVCSFKGINAQKLEVQVLATCQNFFQNQQLYSKINNAIHQRLKKQRVIEAKSTLTQEQLI  359
            FVC FKGINAQ LE +VL  C++F+QNQ++Y+KI+ AI++R+K+QR IE   TLTQEQLI
Sbjct  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360

Query  360  DKLAKGMIDAESFRKQTHLMNQKHKTISSISDNQLQTSLQKVIQKSFTLNMLHPYIDEIR  419
            +KLA+G+IDAE+FR QT+ + Q+ +  +SI+++Q+Q ++Q++IQK FTLN+L PYI+ I+
Sbjct  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIH  420

Query  420  ITKNKALVGIYFKNEPLNIVNQTSQSSIA  448
            ITK+K L+GIYFKNEPLNIVNQT QSSIA
Sbjct  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449

35) ccrA in NC_017341


> D86934|23|G17|5360824|BAA82194.1|Staphylococcus_aureus_N315|+|25411..26760|ccrA|-|site-specific 
recombinase
Length=449

 Score =  570 bits (2151),  Expect = 6e-164, Method: Compositional matrix adjust.
 Identities = 325/449 (73%), Positives = 404/449 (90%), Gaps = 1/449 (0%)

Query  1    MKRAIGYLRQSTTKQQSLPAQKQAIELLAPKHNIQNIQYISDKQSGRTDNRTGYQQVTER  60
            MK+ IGYLRQST KQQSL+AQKQAIE +A KH+IQ+I++ SDKQSGR DNR+GY+Q+T+ 
Sbjct  1    MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60

Query  61   IQQRQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120
            IQQ QCD+LCCYRLNRLHRNLKNALKL+KLCQ YHVHILSVHDGYFDMD+AFDR+KLNIF
Sbjct  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120

Query  121  MSLAELESDNIGEQVKNGLREKAKQGKLITTHAPFGYHYQNGTFIINNDESPTVKAVFNY  180
            +SLAELESDNIGEQV+NGL+EKAKQG+LITTHAPFGY+Y+NG+FIIN++ESPTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180

Query  181  YLQGYGYKKIAQYLEDDNKLITRKPYQVRNIIMNPNYCGRVINQYGQYNNMVPPIVSATK  240
            Y++G GYKKIAQ LE+DN  I R+PYQVRNII+NPNYCGRV NQYGQ++NM P+IVS++ 
Sbjct  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240

Query  241  YEHAQAIRNKKQLHCIPSENQLKQKIKCPCCDSTLTNMTIRKK-HTLRYYICPKNMNESR  299
            YE+AQ +R++KQ+   +S+NQLKQKIKCPCC++TLTNMT+RKK HTLRYY+CPKNMN SR
Sbjct  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300

Query  300  FVCSFKGINAQKLEVQVLATCQNFFQNQQLYSKINNAIHQRLKKQRVIEAKSTLTQEQLI  359
            FVC FKGINAQ LE +VL  C++F+QNQ++Y+KI+ AI++R+K+QR IE   TLTQEQLI
Sbjct  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360

Query  360  DKLAKGMIDAESFRKQTHLMNQKHKTISSISDNQLQTSLQKVIQKSFTLNMLHPYIDEIR  419
            +KLA+G+IDAE+FR QT+ + Q+ +  +SI+++Q+Q ++Q++IQK FTLN+L PYI+ I+
Sbjct  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIH  420

Query  420  ITKNKALVGIYFKNEPLNIVNQTSQSSIA  448
            ITK+K L+GIYFKNEPLNIVNQT QSSIA
Sbjct  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449

36) SAT0131_00056 in NC_017347


> D86934|23|G17|5360824|BAA82194.1|Staphylococcus_aureus_N315|+|25411..26760|ccrA|-|site-specific 
recombinase
Length=449

 Score =  570 bits (2151),  Expect = 6e-164, Method: Compositional matrix adjust.
 Identities = 325/449 (73%), Positives = 404/449 (90%), Gaps = 1/449 (0%)

Query  1    MKRAIGYLRQSTTKQQSLPAQKQAIELLAPKHNIQNIQYISDKQSGRTDNRTGYQQVTER  60
            MK+ IGYLRQST KQQSL+AQKQAIE +A KH+IQ+I++ SDKQSGR DNR+GY+Q+T+ 
Sbjct  1    MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60

Query  61   IQQRQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120
            IQQ QCD+LCCYRLNRLHRNLKNALKL+KLCQ YHVHILSVHDGYFDMD+AFDR+KLNIF
Sbjct  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120

Query  121  MSLAELESDNIGEQVKNGLREKAKQGKLITTHAPFGYHYQNGTFIINNDESPTVKAVFNY  180
            +SLAELESDNIGEQV+NGL+EKAKQG+LITTHAPFGY+Y+NG+FIIN++ESPTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180

Query  181  YLQGYGYKKIAQYLEDDNKLITRKPYQVRNIIMNPNYCGRVINQYGQYNNMVPPIVSATK  240
            Y++G GYKKIAQ LE+DN  I R+PYQVRNII+NPNYCGRV NQYGQ++NM P+IVS++ 
Sbjct  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240

Query  241  YEHAQAIRNKKQLHCIPSENQLKQKIKCPCCDSTLTNMTIRKK-HTLRYYICPKNMNESR  299
            YE+AQ +R++KQ+   +S+NQLKQKIKCPCC++TLTNMT+RKK HTLRYY+CPKNMN SR
Sbjct  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300

Query  300  FVCSFKGINAQKLEVQVLATCQNFFQNQQLYSKINNAIHQRLKKQRVIEAKSTLTQEQLI  359
            FVC FKGINAQ LE +VL  C++F+QNQ++Y+KI+ AI++R+K+QR IE   TLTQEQLI
Sbjct  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360

Query  360  DKLAKGMIDAESFRKQTHLMNQKHKTISSISDNQLQTSLQKVIQKSFTLNMLHPYIDEIR  419
            +KLA+G+IDAE+FR QT+ + Q+ +  +SI+++Q+Q ++Q++IQK FTLN+L PYI+ I+
Sbjct  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIH  420

Query  420  ITKNKALVGIYFKNEPLNIVNQTSQSSIA  448
            ITK+K L+GIYFKNEPLNIVNQT QSSIA
Sbjct  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449

37) ccrA in NC_017331


> D86934|23|G17|5360824|BAA82194.1|Staphylococcus_aureus_N315|+|25411..26760|ccrA|-|site-specific 
recombinase
Length=449

 Score =  570 bits (2151),  Expect = 6e-164, Method: Compositional matrix adjust.
 Identities = 325/449 (73%), Positives = 404/449 (90%), Gaps = 1/449 (0%)

Query  1    MKRAIGYLRQSTTKQQSLPAQKQAIELLAPKHNIQNIQYISDKQSGRTDNRTGYQQVTER  60
            MK+ IGYLRQST KQQSL+AQKQAIE +A KH+IQ+I++ SDKQSGR DNR+GY+Q+T+ 
Sbjct  1    MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60

Query  61   IQQRQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120
            IQQ QCD+LCCYRLNRLHRNLKNALKL+KLCQ YHVHILSVHDGYFDMD+AFDR+KLNIF
Sbjct  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120

Query  121  MSLAELESDNIGEQVKNGLREKAKQGKLITTHAPFGYHYQNGTFIINNDESPTVKAVFNY  180
            +SLAELESDNIGEQV+NGL+EKAKQG+LITTHAPFGY+Y+NG+FIIN++ESPTVKAVFNY
Sbjct  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180

Query  181  YLQGYGYKKIAQYLEDDNKLITRKPYQVRNIIMNPNYCGRVINQYGQYNNMVPPIVSATK  240
            Y++G GYKKIAQ LE+DN  I R+PYQVRNII+NPNYCGRV NQYGQ++NM P+IVS++ 
Sbjct  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240

Query  241  YEHAQAIRNKKQLHCIPSENQLKQKIKCPCCDSTLTNMTIRKK-HTLRYYICPKNMNESR  299
            YE+AQ +R++KQ+   +S+NQLKQKIKCPCC++TLTNMT+RKK HTLRYY+CPKNMN SR
Sbjct  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300

Query  300  FVCSFKGINAQKLEVQVLATCQNFFQNQQLYSKINNAIHQRLKKQRVIEAKSTLTQEQLI  359
            FVC FKGINAQ LE +VL  C++F+QNQ++Y+KI+ AI++R+K+QR IE   TLTQEQLI
Sbjct  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360

Query  360  DKLAKGMIDAESFRKQTHLMNQKHKTISSISDNQLQTSLQKVIQKSFTLNMLHPYIDEIR  419
            +KLA+G+IDAE+FR QT+ + Q+ +  +SI+++Q+Q ++Q++IQK FTLN+L PYI+ I+
Sbjct  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIH  420

Query  420  ITKNKALVGIYFKNEPLNIVNQTSQSSIA  448
            ITK+K L+GIYFKNEPLNIVNQT QSSIA
Sbjct  421  ITKDKNLIGIYFKNEPLNIVNQTMQSSIA  449

38) BN843_350 in NC_021059


> D86934|23|G17|5360824|BAA82194.1|Staphylococcus_aureus_N315|+|25411..26760|ccrA|-|site-specific 
recombinase
Length=449

 Score =  398 bits (1498),  Expect = 3e-112, Method: Compositional matrix adjust.
 Identities = 223/443 (51%), Positives = 344/443 (78%), Gaps = 1/443 (0%)

Query  1    MEEAIAYVRQSTLKQQSLATQKSLIMDTAKQYGWSNVAFYDDKKTGRHTKRSGYQKMVEI  60
            M + I+Y+RQST+KQQSLA+QK  I   A +    ++ FY DK++GR  +RSGY++M ++
Sbjct  1    MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60

Query  61   ITSGKCKVLCCYRLNRLHRNLKNAIQFFEICKKHHITIISVNDGYFDLSKEFDCFRLNIL  120
            I  G+C +LCCYRLNRLHRNLKNA++++ +C+  H+ I+SV+DGYFD+ + FD F+LNI+
Sbjct  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120

Query  121  MSLAEMESNNISEQTKNGIREKAKQGKLITTHAPFGYRYRKGCFVVQEEEAYTVKSVYRW  180
            +SLAE+ES+NI+EQ +NG++EKAKQG+LITTHAPFGY Y++G F+++++E+ TVK+V+  
Sbjct  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180

Query  181  YLQGLGYKKISQHLDSNPNLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIIDIDT  240
            Y++G GYKKI+Q L+ +   I R+PYQVRNI++NPNYCGRV N+YG F+++ P+I+    
Sbjct  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240

Query  241  FEEAQERRIHKQlnrsnsrnklkrrIKCPYCQSTLTNLTIKKENYSLRYYVCPKNMNDAY  300
            +E+AQ  R +KQ+++++S N+LK++IKCP C++TLTN+T++K N +LRYYVCPKNMN + 
Sbjct  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300

Query  301  RTCPFKSINAPELESEVLDTCKKYFEEQSFHKRLNNTILKVLKQQQMKHKETHLTQEQLI  360
              C FK+INA  LE  VL+ CK ++++Q +  +++ +I K +K+Q+  +K+  LTQEQLI
Sbjct  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360

Query  361  EKLAQNRIDVKTFKRLSASCKSE-ENYSTYSTYQIDDKLKYVIKNKITLQDIAPFIDCIK  419
            EKLAQ  ID  TF+  + S + + +  ++ +  QI++ ++ +I++++TL+ + P+I+ I 
Sbjct  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIH  420

Query  420  ITQTKQLQGIYFKNSPLNIVEQS  442
            IT+ K+L GIYFKN PLNIV+Q+
Sbjct  421  ITKDKNLIGIYFKNEPLNIVNQT  443

39) SE0057 in NC_004461


> D86934|23|G17|5360824|BAA82194.1|Staphylococcus_aureus_N315|+|25411..26760|ccrA|-|site-specific 
recombinase
Length=449

 Score =  398 bits (1498),  Expect = 3e-112, Method: Compositional matrix adjust.
 Identities = 223/443 (51%), Positives = 344/443 (78%), Gaps = 1/443 (0%)

Query  1    MEEAIAYVRQSTLKQQSLATQKSLIMDTAKQYGWSNVAFYDDKKTGRHTKRSGYQKMVEI  60
            M + I+Y+RQST+KQQSLA+QK  I   A +    ++ FY DK++GR  +RSGY++M ++
Sbjct  1    MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60

Query  61   ITSGKCKVLCCYRLNRLHRNLKNAIQFFEICKKHHITIISVNDGYFDLSKEFDCFRLNIL  120
            I  G+C +LCCYRLNRLHRNLKNA++++ +C+  H+ I+SV+DGYFD+ + FD F+LNI+
Sbjct  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120

Query  121  MSLAEMESNNISEQTKNGIREKAKQGKLITTHAPFGYRYRKGCFVVQEEEAYTVKSVYRW  180
            +SLAE+ES+NI+EQ +NG++EKAKQG+LITTHAPFGY Y++G F+++++E+ TVK+V+  
Sbjct  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180

Query  181  YLQGLGYKKISQHLDSNPNLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIIDIDT  240
            Y++G GYKKI+Q L+ +   I R+PYQVRNI++NPNYCGRV N+YG F+++ P+I+    
Sbjct  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240

Query  241  FEEAQERRIHKQlnrsnsrnklkrrIKCPYCQSTLTNLTIKKENYSLRYYVCPKNMNDAY  300
            +E+AQ  R +KQ+++++S N+LK++IKCP C++TLTN+T++K N +LRYYVCPKNMN + 
Sbjct  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300

Query  301  RTCPFKSINAPELESEVLDTCKKYFEEQSFHKRLNNTILKVLKQQQMKHKETHLTQEQLI  360
              C FK+INA  LE  VL+ CK ++++Q +  +++ +I K +K+Q+  +K+  LTQEQLI
Sbjct  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360

Query  361  EKLAQNRIDVKTFKRLSASCKSE-ENYSTYSTYQIDDKLKYVIKNKITLQDIAPFIDCIK  419
            EKLAQ  ID  TF+  + S + + +  ++ +  QI++ ++ +I++++TL+ + P+I+ I 
Sbjct  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIH  420

Query  420  ITQTKQLQGIYFKNSPLNIVEQS  442
            IT+ K+L GIYFKN PLNIV+Q+
Sbjct  421  ITKDKNLIGIYFKNEPLNIVNQT  443