Homolog Viewer

PAthogenisity Island DataBase (PAI DB)

Home PAIs REIs Genomes Search Links

Homologs of hrpT gene of AF232004

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) hrpT
( NP_791217.1 )

type III secretion protein

NC_004578
(Pseudomonas syringae DC3000)

2e-19

100

2) hrpT
( YP_002381169.1 )

HrpT protein

NC_005773
(Pseudomonas syringae 1448A)

5e-18

3) Psyr_1201
( YP_234293.1 )

type III secretion protein HrpT

NC_007005
(Pseudomonas syringae B728a)

5e-18

4) hrpT
( YP_005210962.1 )

protein HrpT

NC_016830
(Pseudomonas fluorescens F113)

1e-08

5) PSEBR_c2g113
( YP_004356885.1 )

type III secretion protein

NC_015379
(Pseudomonas brassicacearum NFM421)

1e-08

6) H045_00210
( YP_007395614.1 )

putative type III secretion lipoprotein

NC_020209
(Pseudomonas poae RE*1-1-14)

3e-06

7) rspT
( YP_002870385.1 )

putative type III secretion lipoprotein

NC_012660
(Pseudomonas fluorescens SBW25)

3e-06

• Sequence Alignments

1) hrpT in NC_004578


> AF232004|23|G22|3228548|AAC34757.1|Pseudomonas_syringae_pv._tomato_DC3000|-|22767..22970|hrpT|-|HrpT
Length=67

 Score = 88.9 bits (318),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 67/67 (100%), Positives = 67/67 (100%), Gaps = 0/67 (0%)

Query  1   MMIRSltlllllfatltGCATHGCAGNACKRPDSNNRELVIWWPPDMREGLDDRDHERDY  60
           MMIRSLTLLLLLFATLTGCATHGCAGNACKRPDSNNRELVIWWPPDMREGLDDRDHERDY
Sbjct  1   MMIRSLTLLLLLFATLTGCATHGCAGNACKRPDSNNRELVIWWPPDMREGLDDRDHERDY  60

Query  61  TVVQLKD  67
           TVVQLKD
Sbjct  61  TVVQLKD  67

2) hrpT in NC_005773


> AF232004|23|G22|3228548|AAC34757.1|Pseudomonas_syringae_pv._tomato_DC3000|-|22767..22970|hrpT|-|HrpT
Length=67

 Score = 83.9 bits (299),  Expect = 5e-18, Method: Compositional matrix adjust.
 Identities = 53/67 (80%), Positives = 63/67 (95%), Gaps = 0/67 (0%)

Query  1   MKISSIAVVLVLFATLSGCATHGCTGVACKRPDSTNRELVIWWPPDMRDGLDDQDHERDY  60
           M I S++++L+LFATL+GCATHGC+G ACKRPDS NRELVIWWPPDMR+GLDD+DHERDY
Sbjct  1   MMIRSLTLLLLLFATLTGCATHGCAGNACKRPDSNNRELVIWWPPDMREGLDDRDHERDY  60

Query  61  TVVKLKD  67
           TVV+LKD
Sbjct  61  TVVQLKD  67

3) Psyr_1201 in NC_007005


> AF232004|23|G22|3228548|AAC34757.1|Pseudomonas_syringae_pv._tomato_DC3000|-|22767..22970|hrpT|-|HrpT
Length=67

 Score = 83.9 bits (299),  Expect = 5e-18, Method: Compositional matrix adjust.
 Identities = 51/67 (77%), Positives = 63/67 (95%), Gaps = 0/67 (0%)

Query  1   MKISSVAIVLVVFATLTGCATHGCSGTACKRPDSTSRELVIWWPPDMRDGLDDQDHERDY  60
           M I S++++L++FATLTGCATHGC+G ACKRPDS +RELVIWWPPDMR+GLDD+DHERDY
Sbjct  1   MMIRSLTLLLLLFATLTGCATHGCAGNACKRPDSNNRELVIWWPPDMREGLDDRDHERDY  60

Query  61  TVVKLRD  67
           TVV+L+D
Sbjct  61  TVVQLKD  67

4) hrpT in NC_016830


> AF232004|23|G22|3228548|AAC34757.1|Pseudomonas_syringae_pv._tomato_DC3000|-|22767..22970|hrpT|-|HrpT
Length=67

 Score = 52.9 bits (181),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 26/51 (51%), Positives = 37/51 (73%), Gaps = 1/51 (1%)

Query  19  GCANRFGCQGDACSRAEPDNGRLVIWWSPGMRGGLGSPEHPLDHTVVPLEN  69
           GCA + GC G+AC R++++N  LVIWW+P+MR GL+  +H  D TVV L +
Sbjct  18  GCATH-GCAGNACKRPDSNNRELVIWWPPDMREGLDDRDHERDYTVVQLKD  67

5) PSEBR_c2g113 in NC_015379


> AF232004|23|G22|3228548|AAC34757.1|Pseudomonas_syringae_pv._tomato_DC3000|-|22767..22970|hrpT|-|HrpT
Length=67

 Score = 52.6 bits (180),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 25/51 (50%), Positives = 37/51 (73%), Gaps = 1/51 (1%)

Query  19  GCANRSGCQGDACSRAEPDNGRLVIWWSPGMRGGLGSPEHPLDHSVVPLEN  69
           GCA + GC G+AC R++++N  LVIWW+P+MR GL+  +H  D +VV L +
Sbjct  18  GCATH-GCAGNACKRPDSNNRELVIWWPPDMREGLDDRDHERDYTVVQLKD  67

6) H045_00210 in NC_020209


> AF232004|23|G22|3228548|AAC34757.1|Pseudomonas_syringae_pv._tomato_DC3000|-|22767..22970|hrpT|-|HrpT
Length=67

 Score = 45.0 bits (151),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 20/48 (42%), Positives = 30/48 (63%), Gaps = 1/48 (2%)

Query  19  GCSP-TCRGDSCSRPQSTKDKLVIWWPPQMRVEPGPSGERADYQTISL  65
           GC+   C G++C RP+S +  LVIWWPP+MR   +  ++  DY  + L
Sbjct  18  GCATHGCAGNACKRPDSNNRELVIWWPPDMREGLDDRDHERDYTVVQL  65

7) rspT in NC_012660


> AF232004|23|G22|3228548|AAC34757.1|Pseudomonas_syringae_pv._tomato_DC3000|-|22767..22970|hrpT|-|HrpT
Length=67

 Score = 44.8 bits (150),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 21/48 (44%), Positives = 30/48 (63%), Gaps = 1/48 (2%)

Query  19  GC-TPTCKGDSCSRPQSTKDKMVIWWPPQMRVEPGPAGERADYQTVSL  65
           GC T  C G++C RP+S +  +VIWWPP+MR   +  ++  DY  V L
Sbjct  18  GCATHGCAGNACKRPDSNNRELVIWWPPDMREGLDDRDHERDYTVVQL  65