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Homologs of SAUSA300_1402 gene of NC_007793_P4

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) SACOL0369
( YP_185261.1 )

prophage L54a, Clp protease

NC_002951
(Staphylococcus aureus COL)

2e-95

100

2) SAUSA300_1402
( YP_494099.1 )

phiSLT ORF257-like protein prophage protease

NC_007793
(Staphylococcus aureus FPR3757)

2e-95

100

3) SAEMRSA15_13720
( YP_006237716.1 )

phage protease

NC_017763
(Staphylococcus aureus HO 5096 0412)

2e-95

100

4) SAA6159_01376
( YP_005739522.1 )

caseinolytic phage protease

NC_017338
(Staphylococcus aureus JKD6159)

2e-95

100

5) BN843_14490
( YP_007868514.1 )

Prophage Clp protease-like protein

NC_021059
(Staphylococcus aureus M1)

2e-95

100

6) SAS0934
( YP_043061.1 )

phage protease

NC_002953
(Staphylococcus aureus MSSA476)

2e-95

100

7) MW1399
( NP_646216.1 )

protease

NC_003923
(Staphylococcus aureus MW2)

2e-95

100

8) SAOUHSC_01536
( YP_500052.1 )

scaffolding protease

NC_007795
(Staphylococcus aureus NCTC 8325)

2e-95

100

9) SAPIG0375
( YP_005733185.1 )

protease

NC_017333
(Staphylococcus aureus ST398)

2e-95

100

10) SAPIG1516
( YP_005734312.1 )

protease

NC_017333
(Staphylococcus aureus ST398)

2e-95

100

11) USA300HOU_1451
( YP_001575339.1 )

bacteriophage protease

NC_010079
(Staphylococcus aureus TCH1516)

2e-95

100

12) HMPREF0772_11692
( YP_005747774.1 )

bacteriophage protease

NC_017342
(Staphylococcus aureus TCH60)

2e-95

100

13) SAR1517
( YP_040918.1 )

phage protease

NC_002952
(Staphylococcus aureus MRSA252)

3e-95

14) SAAV_2030
( YP_003282886.1 )

phage Clp protease

NC_013450
(Staphylococcus aureus ED98)

3e-95

15) MS7_1466
( YP_005757907.1 )

clp protease family protein

NC_017351
(Staphylococcus aureus 11819-97)

5e-95

16) C248_0351
( YP_006709112.1 )

phage protease

NC_018608
(Staphylococcus aureus 08BA02176)

2e-94

17) CA347_1445
( YP_008128303.1 )

peptidase S49 family protein

NC_021554
(Staphylococcus aureus CA-347)

2e-94

18) SaurJH1_1081
( YP_001316224.1 )

peptidase S14 ClpP

NC_009632
(Staphylococcus aureus JH1)

2e-94

19) SaurJH9_1061
( YP_001246438.1 )

peptidase S14, ClpP

NC_009487
(Staphylococcus aureus JH9)

2e-94

20) SAOV_0320
( YP_005735837.1 )

Prophage Clp protease-like protein

NC_017337
(Staphylococcus aureus ED133)

1e-93

21) SABB_00010
( YP_008168234.1 )

putative phage Clp protease

NC_021670
(Staphylococcus aureus Bmb9393)

3e-90

22) A284_07890
( YP_007385339.1 )

Prophage Clp protease-like protein

NC_020164
(Staphylococcus warneri SG1)

6e-81

23) clpP
( YP_535678.1 )

ATP-dependent Clp protease proteolytic subunit

NC_007929
(Lactobacillus salivarius UCC118)

9e-55

24) clpP
( YP_005863725.1 )

ATP-dependent Clp protease proteolytic subunit

NC_017481
(Lactobacillus salivarius CECT 5713)

2e-53

25) BTG_30035
( YP_006607433.1 )

serine protease

NC_018500
(Bacillus thuringiensis HD-771)

1e-51

26) GK0530
( YP_146383.1 )

serine protease

NC_006510
(Geobacillus kaustophilus HTA426)

2e-50

27) CA_C1893
( NP_348516.1 )

ClpP family serine protease

NC_003030
(Clostridium acetobutylicum ATCC 824)

4e-48

28) SMB_G1918
( YP_004636556.1 )

ClpP family serine protease

NC_015687
(Clostridium acetobutylicum DSM 1731)

4e-48

29) CEA_G1905
( YP_005671037.1 )

ClpP family serine

NC_017295
(Clostridium acetobutylicum EA 2018)

4e-48

30) LL3_00910
( YP_005544681.1 )

ATP-dependent Clp protease proteolytic subunit Endopeptidase Clp

NC_017190
(Bacillus amyloliquefaciens LL3)

5e-47

31) BAMF_0848
( YP_003919444.1 )

ATP-dependent Clp protease proteolytic subunit Endopeptidase Clp

NC_014551
(Bacillus amyloliquefaciens DSM 7)

3e-46

32) BLi03615
( YP_006714902.2 )

phage peptidase

NC_006322
(Bacillus licheniformis DSM 13)

7e-46

33) BLi01550
( YP_006712935.1 )

phage ATP-dependent CLP protease

NC_006322
(Bacillus licheniformis DSM 13)

5e-45

34) BL00880
( YP_078733.1 )

ATP-dependent Clp protease proteolytic subunit

NC_006270
(Bacillus licheniformis DSM 13)

5e-45

35) BL03503
( YP_080707.2 )

ATP-dependent protease proteolytic subunit

NC_006270
(Bacillus licheniformis DSM 13)

1e-44

36) BA_4092
( NP_846331.1 )

prophage LambdaBa02, Clp protease

NC_003997
(Bacillus anthracis Ames)

4e-43

37) GBAA_4092
( YP_020737.2 )

prophage LambdaBa02, Clp protease

NC_007530
(Bacillus anthracis Ames Ancestor)

4e-43

38) BAS3804
( YP_030054.1 )

prophage LambdaBa02, Clp protease family protein

NC_005945
(Bacillus anthracis Sterne)

4e-43

39) BCAH187_A2239
( YP_002338192.1 )

prophage LambdaBa02, Clp protease family protein

NC_011658
(Bacillus cereus AH187)

6e-43

40) TepRe1_2422
( YP_004461831.1 )

peptidase S14 ClpP

NC_015519
(Tepidanaerobacter acetatoxydans Re1)

6e-43

41) TepiRe1_2604
( YP_007273448.1 )

ATP-dependent Clp protease proteolytic subunit

NC_019954
(Tepidanaerobacter acetatoxydans Re1)

6e-43

42) clpP
( YP_004034210.1 )

ATP-dependent Clp protease proteolytic subunit

NC_014727
(Lactobacillus delbrueckii ND02)

2e-42

43) CKL_4067
( YP_001219868.1 )

ClpP-like phage protease

NC_009466
(Clostridium kluyveri DSM 555)

6e-42

44) CKR_P47
( YP_002470457.1 )

hypothetical protein

NC_011836
(Clostridium kluyveri NBRC 12016)

6e-42

45) MC28_3171
( YP_006829992.1 )

oxidoreductase ykuF

NC_018693
(Bacillus thuringiensis MC28)

3e-41

46) CLB_2447
( YP_001384751.1 )

Clp protease

NC_009697
(Clostridium botulinum ATCC 19397)

4e-41

47) BAA_4117
( YP_002868186.1 )

prophage LambdaBa02, Clp protease family protein

NC_012659
(Bacillus anthracis A0248)

9e-41

48) BAMEG_0537
( YP_002813148.1 )

prophage LambdaBa02, Clp protease family protein

NC_012581
(Bacillus anthracis CDC 684)

9e-41

49) H9401_3902
( YP_006210956.1 )

Prophage LambdaBa02, Clp protease family protein

NC_017729
(Bacillus anthracis H9401)

9e-41

50) BCN_2052
( YP_005104585.1 )

prophage LambdaBa02, Clp protease family protein

NC_016771
(Bacillus cereus NC7401)

2e-40

51) CLD_2060
( YP_001782120.1 )

Clp protease

NC_010516
(Clostridium botulinum Okra)

4e-39

52) clpP1
( YP_005131563.1 )

hypothetical protein

NC_016784
(Bacillus amyloliquefaciens CAU B946)

9e-39

53) EHR_00640
( YP_006486013.1 )

hypothetical protein

NC_018081
(Enterococcus hirae ATCC 9790)

7e-38

54) CLJU_c03550
( YP_003778539.1 )

phage related protease

NC_014328
(Clostridium ljungdahlii ATCC 49587)

6e-37

55) Clo1100_1163
( YP_005147220.1 )

protease subunit of ATP-dependent protease

NC_016791
(Clostridium sp. BNL1100)

2e-34

56) Z3097
( NP_288457.1 )

peptidase encoded within prophage CP-933U

NC_002655
(Escherichia coli EDL933)

1e-33

57) CLL_A2258
( YP_001886447.1 )

peptidase S14, ClpP

NC_010674
(Clostridium botulinum Eklund 17B)

1e-32

58) Clopa_0340
( YP_007939079.1 )

protease subunit of ATP-dependent protease

NC_021182
(Clostridium pasteurianum BC1)

2e-32

59) HD73_2279
( YP_007421378.1 )

ATP-dependent Clp protease, proteolytic subunit ClpP

NC_020238
(Bacillus cereus HD73)

1e-31

60) HD73_5257
( YP_007424355.1 )

ATP-dependent Clp protease, proteolytic subunit ClpP

NC_020238
(Bacillus cereus HD73)

1e-31

61) APECO78_11525
( YP_007381478.1 )

putative ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)

NC_020163
(Escherichia coli APEC O78)

7e-31

62) BTF1_15155
( YP_006611126.1 )

Clp protease

NC_018508
(Bacillus thuringiensis HD-789)

1e-30

63) HD73_0786
( YP_007419886.1 )

ATP-dependent endopeptidase clp proteolytic subunit clpP

NC_020238
(Bacillus cereus HD73)

8e-31

64) DGI_2054
( YP_008590993.1 )

putative peptidase S14 ClpP

NC_022444
(Desulfovibrio gigas ATCC 19364)

9e-30

65) LMHCC_2567
( YP_002351516.1 )

serine protease

NC_011660
(Listeria monocytogenes HCC23)

6e-23

66) lmo4a_0090
( YP_005925081.1 )

phage protein, Clp family

NC_017529
(Listeria monocytogenes L99)

6e-23

67) LMM7_0097
( YP_005946161.1 )

serine protease

NC_017537
(Listeria monocytogenes M7)

6e-23

68) EFAU085_00786
( YP_008394310.1 )

ATP-dependent Clp protease proteolytic subunit

NC_021994
(Enterococcus faecium AUS0085)

8e-23

69) EHR_09570
( YP_006487713.1 )

phiSLT ORF257-like protein prophage protease

NC_018081
(Enterococcus hirae ATCC 9790)

1e-22

70) BTG_07140
( YP_006602943.1 )

Clp protease

NC_018500
(Bacillus thuringiensis HD-771)

3e-20

• Sequence Alignments

1) SACOL0369 in NC_002951


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  341 bits (1280),  Expect = 2e-95, Method: Compositional matrix adjust.
 Identities = 257/257 (100%), Positives = 257/257 (100%), Gaps = 0/257 (0%)

Query  1    MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS  60
            MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS
Sbjct  1    MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS  60

Query  61   SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM  120
            SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM
Sbjct  61   SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM  120

Query  121  TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID  180
            TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID
Sbjct  121  TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID  180

Query  181  EILGANEIAASISKEQYKRFENVPEDLkkdvdkitkiddvdtSELVETPKESMSleekek  240
            EILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKESMSLEEKEK
Sbjct  181  EILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKESMSLEEKEK  240

Query  241  rekikreceilkMTMNY  257
            REKIKRECEILKMTMNY
Sbjct  241  REKIKRECEILKMTMNY  257

2) SAEMRSA15_13720 in NC_017763


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  341 bits (1280),  Expect = 2e-95, Method: Compositional matrix adjust.
 Identities = 257/257 (100%), Positives = 257/257 (100%), Gaps = 0/257 (0%)

Query  1    MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS  60
            MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS
Sbjct  1    MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS  60

Query  61   SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM  120
            SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM
Sbjct  61   SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM  120

Query  121  TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID  180
            TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID
Sbjct  121  TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID  180

Query  181  EILGANEIAASISKEQYKRFENVPEDLkkdvdkitkiddvdtSELVETPKESMSleekek  240
            EILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKESMSLEEKEK
Sbjct  181  EILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKESMSLEEKEK  240

Query  241  rekikreceilkMTMNY  257
            REKIKRECEILKMTMNY
Sbjct  241  REKIKRECEILKMTMNY  257

3) SAA6159_01376 in NC_017338


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  341 bits (1280),  Expect = 2e-95, Method: Compositional matrix adjust.
 Identities = 257/257 (100%), Positives = 257/257 (100%), Gaps = 0/257 (0%)

Query  1    MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS  60
            MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS
Sbjct  1    MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS  60

Query  61   SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM  120
            SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM
Sbjct  61   SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM  120

Query  121  TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID  180
            TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID
Sbjct  121  TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID  180

Query  181  EILGANEIAASISKEQYKRFENVPEDLkkdvdkitkiddvdtSELVETPKESMSleekek  240
            EILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKESMSLEEKEK
Sbjct  181  EILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKESMSLEEKEK  240

Query  241  rekikreceilkMTMNY  257
            REKIKRECEILKMTMNY
Sbjct  241  REKIKRECEILKMTMNY  257

4) BN843_14490 in NC_021059


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  341 bits (1280),  Expect = 2e-95, Method: Compositional matrix adjust.
 Identities = 257/257 (100%), Positives = 257/257 (100%), Gaps = 0/257 (0%)

Query  1    MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS  60
            MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS
Sbjct  1    MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS  60

Query  61   SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM  120
            SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM
Sbjct  61   SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM  120

Query  121  TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID  180
            TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID
Sbjct  121  TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID  180

Query  181  EILGANEIAASISKEQYKRFENVPEDLkkdvdkitkiddvdtSELVETPKESMSleekek  240
            EILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKESMSLEEKEK
Sbjct  181  EILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKESMSLEEKEK  240

Query  241  rekikreceilkMTMNY  257
            REKIKRECEILKMTMNY
Sbjct  241  REKIKRECEILKMTMNY  257

5) SAS0934 in NC_002953


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  341 bits (1280),  Expect = 2e-95, Method: Compositional matrix adjust.
 Identities = 257/257 (100%), Positives = 257/257 (100%), Gaps = 0/257 (0%)

Query  1    MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS  60
            MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS
Sbjct  1    MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS  60

Query  61   SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM  120
            SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM
Sbjct  61   SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM  120

Query  121  TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID  180
            TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID
Sbjct  121  TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID  180

Query  181  EILGANEIAASISKEQYKRFENVPEDLkkdvdkitkiddvdtSELVETPKESMSleekek  240
            EILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKESMSLEEKEK
Sbjct  181  EILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKESMSLEEKEK  240

Query  241  rekikreceilkMTMNY  257
            REKIKRECEILKMTMNY
Sbjct  241  REKIKRECEILKMTMNY  257

6) MW1399 in NC_003923


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  341 bits (1280),  Expect = 2e-95, Method: Compositional matrix adjust.
 Identities = 257/257 (100%), Positives = 257/257 (100%), Gaps = 0/257 (0%)

Query  1    MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS  60
            MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS
Sbjct  1    MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS  60

Query  61   SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM  120
            SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM
Sbjct  61   SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM  120

Query  121  TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID  180
            TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID
Sbjct  121  TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID  180

Query  181  EILGANEIAASISKEQYKRFENVPEDLkkdvdkitkiddvdtSELVETPKESMSleekek  240
            EILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKESMSLEEKEK
Sbjct  181  EILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKESMSLEEKEK  240

Query  241  rekikreceilkMTMNY  257
            REKIKRECEILKMTMNY
Sbjct  241  REKIKRECEILKMTMNY  257

7) SAOUHSC_01536 in NC_007795


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  341 bits (1280),  Expect = 2e-95, Method: Compositional matrix adjust.
 Identities = 257/257 (100%), Positives = 257/257 (100%), Gaps = 0/257 (0%)

Query  1    MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS  60
            MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS
Sbjct  1    MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS  60

Query  61   SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM  120
            SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM
Sbjct  61   SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM  120

Query  121  TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID  180
            TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID
Sbjct  121  TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID  180

Query  181  EILGANEIAASISKEQYKRFENVPEDLkkdvdkitkiddvdtSELVETPKESMSleekek  240
            EILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKESMSLEEKEK
Sbjct  181  EILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKESMSLEEKEK  240

Query  241  rekikreceilkMTMNY  257
            REKIKRECEILKMTMNY
Sbjct  241  REKIKRECEILKMTMNY  257

8) SAPIG0375 in NC_017333


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  341 bits (1280),  Expect = 2e-95, Method: Compositional matrix adjust.
 Identities = 234/234 (100%), Positives = 234/234 (100%), Gaps = 0/234 (0%)

Query  1    MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS  60
            MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS
Sbjct  1    MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS  60

Query  61   SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM  120
            SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM
Sbjct  61   SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM  120

Query  121  TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID  180
            TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID
Sbjct  121  TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID  180

Query  181  EILGANEIAASISKEQYKRFENVPEDLkkdvdkitkiddvdtSELVETPKESMS  234
            EILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKESMS
Sbjct  181  EILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKESMS  234

9) SAPIG1516 in NC_017333


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  341 bits (1280),  Expect = 2e-95, Method: Compositional matrix adjust.
 Identities = 234/234 (100%), Positives = 234/234 (100%), Gaps = 0/234 (0%)

Query  1    MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS  60
            MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS
Sbjct  1    MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS  60

Query  61   SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM  120
            SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM
Sbjct  61   SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM  120

Query  121  TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID  180
            TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID
Sbjct  121  TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID  180

Query  181  EILGANEIAASISKEQYKRFENVPEDLkkdvdkitkiddvdtSELVETPKESMS  234
            EILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKESMS
Sbjct  181  EILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKESMS  234

10) HMPREF0772_11692 in NC_017342


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  341 bits (1280),  Expect = 2e-95, Method: Compositional matrix adjust.
 Identities = 257/257 (100%), Positives = 257/257 (100%), Gaps = 0/257 (0%)

Query  1    MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS  60
            MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS
Sbjct  1    MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS  60

Query  61   SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM  120
            SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM
Sbjct  61   SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM  120

Query  121  TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID  180
            TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID
Sbjct  121  TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID  180

Query  181  EILGANEIAASISKEQYKRFENVPEDLkkdvdkitkiddvdtSELVETPKESMSleekek  240
            EILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKESMSLEEKEK
Sbjct  181  EILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKESMSLEEKEK  240

Query  241  rekikreceilkMTMNY  257
            REKIKRECEILKMTMNY
Sbjct  241  REKIKRECEILKMTMNY  257

11) SAUSA300_1402 in NC_007793


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  341 bits (1280),  Expect = 2e-95, Method: Compositional matrix adjust.
 Identities = 257/257 (100%), Positives = 257/257 (100%), Gaps = 0/257 (0%)

Query  1    MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS  60
            MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS
Sbjct  1    MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS  60

Query  61   SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM  120
            SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM
Sbjct  61   SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM  120

Query  121  TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID  180
            TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID
Sbjct  121  TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID  180

Query  181  EILGANEIAASISKEQYKRFENVPEDLkkdvdkitkiddvdtSELVETPKESMSleekek  240
            EILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKESMSLEEKEK
Sbjct  181  EILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKESMSLEEKEK  240

Query  241  rekikreceilkMTMNY  257
            REKIKRECEILKMTMNY
Sbjct  241  REKIKRECEILKMTMNY  257

12) USA300HOU_1451 in NC_010079


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  341 bits (1280),  Expect = 2e-95, Method: Compositional matrix adjust.
 Identities = 257/257 (100%), Positives = 257/257 (100%), Gaps = 0/257 (0%)

Query  1    MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS  60
            MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS
Sbjct  1    MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS  60

Query  61   SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM  120
            SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM
Sbjct  61   SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM  120

Query  121  TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID  180
            TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID
Sbjct  121  TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID  180

Query  181  EILGANEIAASISKEQYKRFENVPEDLkkdvdkitkiddvdtSELVETPKESMSleekek  240
            EILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKESMSLEEKEK
Sbjct  181  EILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKESMSLEEKEK  240

Query  241  rekikreceilkMTMNY  257
            REKIKRECEILKMTMNY
Sbjct  241  REKIKRECEILKMTMNY  257

13) SAR1517 in NC_002952


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  341 bits (1279),  Expect = 3e-95, Method: Compositional matrix adjust.
 Identities = 256/257 (99%), Positives = 257/257 (100%), Gaps = 0/257 (0%)

Query  1    MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS  60
            MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS
Sbjct  1    MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS  60

Query  61   SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM  120
            SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM
Sbjct  61   SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM  120

Query  121  TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDTETWLTAEEALSFGLID  180
            TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLD+ETWLTAEEALSFGLID
Sbjct  121  TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID  180

Query  181  EILGANEIAASISKEQYKRFENVPEDLkkdvdkitkiddvdtSELVETPKESMSleekek  240
            EILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKESMSLEEKEK
Sbjct  181  EILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKESMSLEEKEK  240

Query  241  rekikreceilkMTMNY  257
            REKIKRECEILKMTMNY
Sbjct  241  REKIKRECEILKMTMNY  257

14) SAAV_2030 in NC_013450


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  340 bits (1278),  Expect = 3e-95, Method: Compositional matrix adjust.
 Identities = 256/257 (99%), Positives = 257/257 (100%), Gaps = 0/257 (0%)

Query  1    MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS  60
            MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS
Sbjct  1    MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS  60

Query  61   SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDAIFMHKNSFLMIHNSWVM  120
            SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGD+IFMHKNSFLMIHNSWVM
Sbjct  61   SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM  120

Query  121  TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID  180
            TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID
Sbjct  121  TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID  180

Query  181  EILGANEIAASISKEQYKRFENVPEDLkkdvdkitkiddvdtSELVETPKESMSleekek  240
            EILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKESMSLEEKEK
Sbjct  181  EILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKESMSLEEKEK  240

Query  241  rekikreceilkMTMNY  257
            REKIKRECEILKMTMNY
Sbjct  241  REKIKRECEILKMTMNY  257

15) MS7_1466 in NC_017351


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  340 bits (1276),  Expect = 5e-95, Method: Compositional matrix adjust.
 Identities = 256/257 (99%), Positives = 257/257 (100%), Gaps = 0/257 (0%)

Query  1    MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS  60
            MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS
Sbjct  1    MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS  60

Query  61   SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM  120
            SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM
Sbjct  61   SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM  120

Query  121  TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLGQEHLKQMLDAETWLTAEEALSFGLID  180
            TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDL+QEHLKQMLDAETWLTAEEALSFGLID
Sbjct  121  TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID  180

Query  181  EILGANEIAASISKEQYKRFENVPEDLkkdvdkitkiddvdtSELVETPKESMSleekek  240
            EILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKESMSLEEKEK
Sbjct  181  EILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKESMSLEEKEK  240

Query  241  rekikreceilkMTMNY  257
            REKIKRECEILKMTMNY
Sbjct  241  REKIKRECEILKMTMNY  257

16) C248_0351 in NC_018608


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  338 bits (1267),  Expect = 2e-94, Method: Compositional matrix adjust.
 Identities = 232/234 (99%), Positives = 233/234 (99%), Gaps = 0/234 (0%)

Query  1    MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS  60
            MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS
Sbjct  1    MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS  60

Query  61   SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM  120
            SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM
Sbjct  61   SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM  120

Query  121  TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID  180
            TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID
Sbjct  121  TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID  180

Query  181  EILGANEITASISKEQYKRFENVPEDLkkdvdkitkiddvdtFELVETPKESMS  234
            EILGANEI+ASISKEQYKRFENVPEDLKKDVDKITKIDDVDT ELVETPKESMS
Sbjct  181  EILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKESMS  234

17) CA347_1445 in NC_021554


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  338 bits (1267),  Expect = 2e-94, Method: Compositional matrix adjust.
 Identities = 232/234 (99%), Positives = 233/234 (99%), Gaps = 0/234 (0%)

Query  1    MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS  60
            MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS
Sbjct  1    MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS  60

Query  61   SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM  120
            SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM
Sbjct  61   SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM  120

Query  121  TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID  180
            TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID
Sbjct  121  TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID  180

Query  181  EILGANEITASISKEQYKRFENVPEDLkkdvdkitkiddvdtFELVETPKESMS  234
            EILGANEI+ASISKEQYKRFENVPEDLKKDVDKITKIDDVDT ELVETPKESMS
Sbjct  181  EILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKESMS  234

18) SaurJH1_1081 in NC_009632


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  338 bits (1267),  Expect = 2e-94, Method: Compositional matrix adjust.
 Identities = 232/234 (99%), Positives = 233/234 (99%), Gaps = 0/234 (0%)

Query  1    MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS  60
            MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS
Sbjct  1    MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS  60

Query  61   SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM  120
            SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM
Sbjct  61   SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM  120

Query  121  TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID  180
            TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID
Sbjct  121  TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID  180

Query  181  EILGANEITASISKEQYKRFENVPEDLkkdvdkitkiddvdtFELVETPKESMS  234
            EILGANEI+ASISKEQYKRFENVPEDLKKDVDKITKIDDVDT ELVETPKESMS
Sbjct  181  EILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKESMS  234

19) SaurJH9_1061 in NC_009487


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  338 bits (1267),  Expect = 2e-94, Method: Compositional matrix adjust.
 Identities = 232/234 (99%), Positives = 233/234 (99%), Gaps = 0/234 (0%)

Query  1    MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS  60
            MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS
Sbjct  1    MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS  60

Query  61   SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM  120
            SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM
Sbjct  61   SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM  120

Query  121  TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID  180
            TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID
Sbjct  121  TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID  180

Query  181  EILGANEITASISKEQYKRFENVPEDLkkdvdkitkiddvdtFELVETPKESMS  234
            EILGANEI+ASISKEQYKRFENVPEDLKKDVDKITKIDDVDT ELVETPKESMS
Sbjct  181  EILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKESMS  234

20) SAOV_0320 in NC_017337


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  335 bits (1257),  Expect = 1e-93, Method: Compositional matrix adjust.
 Identities = 231/234 (99%), Positives = 232/234 (99%), Gaps = 0/234 (0%)

Query  1    MSKKAKYFQMKRKSKSKGEIFIYGDIVSDKWVESDVTATDFKNKLDELGDISEIDVHINS  60
            MS KAKYFQMKRKSKSKGEIFIYGDIVSDKW ESDVTATDFKNKLDELGDISEIDVHINS
Sbjct  1    MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS  60

Query  61   SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM  120
            SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM
Sbjct  61   SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM  120

Query  121  TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID  180
            TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID
Sbjct  121  TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID  180

Query  181  EVLGANEIAASISKEQYKRFENVPEDLkkdvdkitkiddvdtSELVETPKESMS  234
            E+LGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKESMS
Sbjct  181  EILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKESMS  234

21) SABB_00010 in NC_021670


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  324 bits (1214),  Expect = 3e-90, Method: Compositional matrix adjust.
 Identities = 245/248 (99%), Positives = 248/248 (100%), Gaps = 0/248 (0%)

Query  1    MKRKSKSKGEIFIYGDIVSDKWFENDVTATDFKNKLDDLGDISEIDVHINSSGGSVFEGH  60
            MKRKSKSKGEIFIYGDIVSDKWFE+DVTATDFKNKLD+LGDISEIDVHINSSGGSVFEGH
Sbjct  10   MKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINSSGGSVFEGH  69

Query  61   AIYNMLKMHPAKINIYVDALAASIASVIAMSGDAIFMHKNSFLMIHNSWVMTVGNAEELR  120
            AIYNMLKMHPAKINIYVDALAASIASVIAMSGD+IFMHKNSFLMIHNSWVMTVGNAEELR
Sbjct  70   AIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVMTVGNAEELR  129

Query  121  KTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLIDEILGANEIA  180
            KTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLIDEILGANEIA
Sbjct  130  KTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLIDEILGANEIA  189

Query  181  ASISKEQYKRFENVPEDLkkdvdkitkiddvdtSELVETPKESMSleekekrekikrece  240
            ASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKESMSLEEKEKREKIKRECE
Sbjct  190  ASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKESMSLEEKEKREKIKRECE  249

Query  241  ilkMTMNY  248
            ILKMTMNY
Sbjct  250  ILKMTMNY  257

22) A284_07890 in NC_020164


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  293 bits (1098),  Expect = 6e-81, Method: Compositional matrix adjust.
 Identities = 211/257 (83%), Positives = 244/257 (95%), Gaps = 0/257 (0%)

Query  1    MPKKPNYFQMKRKSQSKGEIYIYGDIVSDKWLETDVTATDFKNQLDELGDVNEIDVHINS  60
            M+ K++YFQMKRKS+SKGEI+IYGDIVSDKW+E+DVTATDFKN+LDELGD++EIDVHINS
Sbjct  1    MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS  60

Query  61   SGGSVFEGHAIYNMLKMHSAKVNIYIDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM  120
            SGGSVFEGHAIYNMLKMH+AK+NIY+DALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM
Sbjct  61   SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM  120

Query  121  TIGNAEELRKTADLLDKTDGVSNTAYLDKATNLSQEELKQLLDAETWLTADEALSMGFVD  180
            T+GNAEELRKTADLL+KTD+VSN+AYLDKA +L QE+LKQ+LDAETWLTA+EALS G++D
Sbjct  121  TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID  180

Query  181  EVLGANEMAASISEEQLKRFNHVPevvekdvdkitkiddidtsdsvETPKKAMSQeekea  240
            E+LGANE+AASIS EQ KRF++VPE + KDVDKITKIDD+DTS+ VETPK +MS EEKE 
Sbjct  181  EILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKESMSLEEKEK  240

Query  241  rekikreceNLKITMNF  257
            REKIKRECE LK+TMN+
Sbjct  241  REKIKRECEILKMTMNY  257

23) clpP in NC_007929


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  206 bits (766),  Expect = 9e-55, Method: Compositional matrix adjust.
 Identities = 118/229 (52%), Positives = 171/229 (75%), Gaps = 4/229 (1%)

Query  12   KYWKMSKTQDNIGEISIYGEIVSEKWFDEEISATSFKDDLDDLGDVKTINLHINSPGGSV  71
            KY +M +   + GEI IYG+IVS+KWF+ +++AT FK+ LD+LGD+  I++HINS+GGSV
Sbjct  6    KYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINSSGGSV  65

Query  72   FEGIAIHNMLKMNKAKINVYVDGLAASIASVIAMSGDTIFMPENSMLMIHNPWTVAMGNS  131
            FEG AI NMLKM+ AKIN+YVD+LAASIASVIAMSGDTIFM  NS LMIHN+W +++GN+
Sbjct  66   FEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVMTVGNA  125

Query  132  KELRKQADDLDRIAQASVKTYLSKSNGKIDEETLVKLLDEETWLSAQEAVDYGLADEVLE  191
             ELRK AD L++    S  +YL K+++ +D+E L ++LD ETWL+A+EA+ +GL DE+L 
Sbjct  126  EELRKTADLLEKTDAVSNSAYLDKAKD-LDQEHLKQMLDAETWLTAEEALSFGLIDEILG  184

Query  192  SNKAVASLPGEFLERYKHVPNQLIKQS---APGNSINRERLIVKAKEKI  237
            +N   AS++ E   R+ +VP++L K+    +  + ++   L+  +KE +
Sbjct  185  ANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKESM  233

24) clpP in NC_017481


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  202 bits (749),  Expect = 2e-53, Method: Compositional matrix adjust.
 Identities = 116/225 (52%), Positives = 168/225 (75%), Gaps = 4/225 (1%)

Query  1    MSKTQDNIGEISIYGEIVSEKWFDEEISATSFKDDLDDLGDVKTINLHINSPGGSVFEGI  60
            M +   + GEI IYG+IVS+KWF+ +++AT FK+ LD+LGD+  I++HINS+GGSVFEG 
Sbjct  10   MKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINSSGGSVFEGH  69

Query  61   AIHNMLKMNKAKINVYVDGLAASIASVIAMSGDTIFMPENSMLMIHNPWTVAMGNSKELR  120
            AI NMLKM+ AKIN+YVD+LAASIASVIAMSGDTIFM  NS LMIHN+W +++GN+ ELR
Sbjct  70   AIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVMTVGNAEELR  129

Query  121  KQADDLDRIAQASVKTYLSKSNGKIDEETLVKLLDEETWLSAQEAVDYGLADEVLESNKA  180
            K AD L++    S  +YL K+++ +D+E L ++LD ETWL+A+EA+ +GL DE+L +N  
Sbjct  130  KTADLLEKTDAVSNSAYLDKAKD-LDQEHLKQMLDAETWLTAEEALSFGLIDEILGANEI  188

Query  181  VASLPGEFLERYKHVPNQLIKQS---APGNSINRERLIVKAKEKI  222
             AS++ E   R+ +VP++L K+    +  + ++   L+  +KE +
Sbjct  189  AASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKESM  233

25) BTG_30035 in NC_018500


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  196 bits (728),  Expect = 1e-51, Method: Compositional matrix adjust.
 Identities = 120/228 (53%), Positives = 167/228 (74%), Gaps = 6/228 (2%)

Query  2    NKFWEMKMSTDSSNSADIFIYGDIVRWVWEDYFPEDVSSNTFKDDLDALGDVSTINLHVN  61
             K+ +MK  + S   ++IFIYGDIV   W   F  DV++  FK+ LD LGD+S I++H+N
Sbjct  5    AKYFQMKRKSKSK--GEIFIYGDIVSDKW---FESDVTATDFKNKLDELGDISEIDVHIN  59

Query  62   SPGGSVFEGIAIYNMLKRHKAKVNVYVDALAASIASVIAMAGDTIYMPKNSMLMIHNPWT  121
            S+GGSVFEG AIYNMLK H AK+N+YVDALAASIASVIAM+GDTI+M KNS LMIHN+W 
Sbjct  60   SSGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWV  119

Query  122  WTEGNATELRKAADDLDRIGNSSKQTYLQKAGEKLTDEMLQEMLDAETWLSADEAYEYGL  181
             T GNA ELRK+AD L++ +  S+ +YL+KA + L +E L++MLDAETWL+A+EA  +GL
Sbjct  120  MTVGNAEELRKTADLLEKTDAVSNSAYLDKAKD-LDQEHLKQMLDAETWLTAEEALSFGL  178

Query  182  CDVVEEANQMAASLDKDVLSKYKNVPKQLKNQDETKLSADEMKIRQQI  229
             D +  AN++AAS+ K+   ++ NVP +LK++ +     D++   + +
Sbjct  179  IDEILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELV  226

26) GK0530 in NC_006510


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  192 bits (711),  Expect = 2e-50, Method: Compositional matrix adjust.
 Identities = 120/216 (56%), Positives = 163/216 (76%), Gaps = 3/216 (1%)

Query  6    KNKFWEIKMSADGSNSADIFIYGDIVSYQWDETDTSAASFKKDLDAVGDVDTINLYINSP  65
            K K+ ++K  + +   ++IFIYGDIVS +W E+D +A+ FK+ LD +GD+  I++ INS+
Sbjct  4    KAKYFQMKRKSKSK--GEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINSS  61

Query  66   GGNVFEGVAIHNMLKRHKAKINVYVDALAASIASVIAMAGDTIHMPKNAMLMIHNPWTWT  125
            GG+VFEG AI NMLK H AKIN+YVDALAASIASVIAM+GDTI M KN+ LMIHN+W  T
Sbjct  62   GGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVMT  121

Query  126  YGNAAELRKVADDLDRIGNSIKQTYLQKAGDKLTEEKLQEMLDAETWLSADEAYEHGLCD  185
             GNA ELRK AD L++ +   + +YL+KA D L +E L++MLDAETWL+A+EA   GL D
Sbjct  122  VGNAEELRKTADLLEKTDAVSNSAYLDKAKD-LDQEHLKQMLDAETWLTAEEALSFGLID  180

Query  186  VVLEASQIAASISDELFSKYKNVPKQLKNQVKNCQK  221
             +L A++IAASIS E + ++ NVP +LK++V +  K
Sbjct  181  EILGANEIAASISKEQYKRFENVPEDLKKDVDKITK  216

27) CA_C1893 in NC_003030


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  184 bits (682),  Expect = 4e-48, Method: Compositional matrix adjust.
 Identities = 107/221 (49%), Positives = 166/221 (76%), Gaps = 3/221 (1%)

Query  11   QNKFWQMKASANDDKQADVFIYGEITSYQWDDTDTTAASFKKDLDALGNLNTINLHLNSP  70
            + K+ QMK  ++   ++++FIYG+I S +W ++D TA+ FK+ LD LG+++ I++H+NS+
Sbjct  4    KAKYFQMKRKSKS--KGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINSS  61

Query  71   GGSVFEGVTICNMLKQNSATVNVYVDALAASIASVIAMAGDTIFMPKNAMLMVHNPSSVV  130
            GGSVFEG +I NMLK ++A +N+YVDALAASIASVIAM+GDTIFM KN+ LM+HN+  + 
Sbjct  62   GGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVMT  121

Query  131  WGNSSDMRKTADDLDKIGLSMQQSYLAKAGDKLDQSTLQQLMDNETWLSADECFSYGLCD  190
             GN+ ++RKTAD L+K +   + +YL KA D LDQ  L+Q++D ETWL+A+E +S+GL D
Sbjct  122  VGNAEELRKTADLLEKTDAVSNSAYLDKAKD-LDQEHLKQMLDAETWLTAEEALSFGLID  180

Query  191  VVQEENNATACTSKELFNNYRNVPKNLLNETNPMAILQDVD  231
             +   N+ +A  SKE ++ + NVP +L ++ + ++ ++DVD
Sbjct  181  EILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVD  221

28) SMB_G1918 in NC_015687


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  184 bits (682),  Expect = 4e-48, Method: Compositional matrix adjust.
 Identities = 107/221 (49%), Positives = 166/221 (76%), Gaps = 3/221 (1%)

Query  11   QNKFWQMKASANDDKQADVFIYGEITSYQWDDTDTTAASFKKDLDALGNLNTINLHLNSP  70
            + K+ QMK  ++   ++++FIYG+I S +W ++D TA+ FK+ LD LG+++ I++H+NS+
Sbjct  4    KAKYFQMKRKSKS--KGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINSS  61

Query  71   GGSVFEGVTICNMLKQNSATVNVYVDALAASIASVIAMAGDTIFMPKNAMLMVHNPSSVV  130
            GGSVFEG +I NMLK ++A +N+YVDALAASIASVIAM+GDTIFM KN+ LM+HN+  + 
Sbjct  62   GGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVMT  121

Query  131  WGNSSDMRKTADDLDKIGLSMQQSYLAKAGDKLDQSTLQQLMDNETWLSADECFSYGLCD  190
             GN+ ++RKTAD L+K +   + +YL KA D LDQ  L+Q++D ETWL+A+E +S+GL D
Sbjct  122  VGNAEELRKTADLLEKTDAVSNSAYLDKAKD-LDQEHLKQMLDAETWLTAEEALSFGLID  180

Query  191  VVQEENNATACTSKELFNNYRNVPKNLLNETNPMAILQDVD  231
             +   N+ +A  SKE ++ + NVP +L ++ + ++ ++DVD
Sbjct  181  EILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVD  221

29) CEA_G1905 in NC_017295


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  184 bits (682),  Expect = 4e-48, Method: Compositional matrix adjust.
 Identities = 107/221 (49%), Positives = 166/221 (76%), Gaps = 3/221 (1%)

Query  11   QNKFWQMKASANDDKQADVFIYGEITSYQWDDTDTTAASFKKDLDALGNLNTINLHLNSP  70
            + K+ QMK  ++   ++++FIYG+I S +W ++D TA+ FK+ LD LG+++ I++H+NS+
Sbjct  4    KAKYFQMKRKSKS--KGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINSS  61

Query  71   GGSVFEGVTICNMLKQNSATVNVYVDALAASIASVIAMAGDTIFMPKNAMLMVHNPSSVV  130
            GGSVFEG +I NMLK ++A +N+YVDALAASIASVIAM+GDTIFM KN+ LM+HN+  + 
Sbjct  62   GGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVMT  121

Query  131  WGNSSDMRKTADDLDKIGLSMQQSYLAKAGDKLDQSTLQQLMDNETWLSADECFSYGLCD  190
             GN+ ++RKTAD L+K +   + +YL KA D LDQ  L+Q++D ETWL+A+E +S+GL D
Sbjct  122  VGNAEELRKTADLLEKTDAVSNSAYLDKAKD-LDQEHLKQMLDAETWLTAEEALSFGLID  180

Query  191  VVQEENNATACTSKELFNNYRNVPKNLLNETNPMAILQDVD  231
             +   N+ +A  SKE ++ + NVP +L ++ + ++ ++DVD
Sbjct  181  EILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVD  221

30) LL3_00910 in NC_017190


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  180 bits (668),  Expect = 5e-47, Method: Compositional matrix adjust.
 Identities = 108/208 (52%), Positives = 157/208 (76%), Gaps = 3/208 (1%)

Query  7    KNKYWSMKASGDSSADVFIFGEVVTSGYEWDEIDTSAASFKQDLDLLGDMSVLNVHINSP  66
            K KY  MK  + S +++FI+G++V+    W E D +A+ FK+ LD LGD+S ++VHINS+
Sbjct  4    KAKYFQMKRKSKSKGEIFIYGDIVSD--KWFESDVTATDFKNKLDELGDISEIDVHINSS  61

Query  67   GGSVFEGVAICSMLKQHKAFVNVYIDGLAASIASVIAMAGDAIFMPSNAMMMVHNPWTIA  126
            GGSVFEG AI +MLK H A +N+Y+D+LAASIASVIAM+GD+IFM  N+ +M+HN+W ++
Sbjct  62   GGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVMT  121

Query  127  MGNANEMRKQADVLDKISESMKASYLEKAGDKLTKETLDSLMDNETWLSASEAVSYGLAD  186
            +GNA+E+RK AD+L+K     +++YL+KA D L +E L  ++D ETWL+A EA+S+GL D
Sbjct  122  VGNAEELRKTADLLEKTDAVSNSAYLDKAKD-LDQEHLKQMLDAETWLTAEEALSFGLID  180

Query  187  EITaanqaaacvssaLFSRYRNVPHALK  214
            EI +AN+ AA +S   + R+ NVP+ LK
Sbjct  181  EILGANEIAASISKEQYKRFENVPEDLK  208

31) BAMF_0848 in NC_014551


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  177 bits (657),  Expect = 3e-46, Method: Compositional matrix adjust.
 Identities = 108/208 (52%), Positives = 156/208 (75%), Gaps = 3/208 (1%)

Query  7    KNKYWSMKASGDSSADVFILGEVVTSGYEWDEIDTSAASFKQDLDLLGDMSVLNVHINSP  66
            K KY  MK  + S +++FI G++V+    W E D +A+ FK+ LD LGD+S ++VHINS+
Sbjct  4    KAKYFQMKRKSKSKGEIFIYGDIVSD--KWFESDVTATDFKNKLDELGDISEIDVHINSS  61

Query  67   GGSVFEGVAICSMLKQHKAFVNVYIDGLAASIASVIAMAGDAIFMPSNAMMMVHNPWTIA  126
            GGSVFEG AI +MLK H A +N+Y+D+LAASIASVIAM+GD+IFM  N+ +M+HN+W ++
Sbjct  62   GGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVMT  121

Query  127  MGNANEMRKQADVLDKISESMKASYLEKAGDKLTKETLDSLMDNETWLSASEAVSYGLAD  186
            +GNA+E+RK AD+L+K     +++YL+KA D L +E L  ++D ETWL+A EA+S+GL D
Sbjct  122  VGNAEELRKTADLLEKTDAVSNSAYLDKAKD-LDQEHLKQMLDAETWLTAEEALSFGLID  180

Query  187  EITaanqaaacvssaLFSRYRNVPHALK  214
            EI +AN+ AA +S   + R+ NVP+ LK
Sbjct  181  EILGANEIAASISKEQYKRFENVPEDLK  208

32) BLi03615 in NC_006322


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  176 bits (653),  Expect = 7e-46, Method: Compositional matrix adjust.
 Identities = 111/233 (48%), Positives = 159/233 (69%), Gaps = 3/233 (1%)

Query  8    KNKYWNMKVLNDSTAEITLYGSITGEGWF-SESSSKAFQAELKSLGDVSSIDLYINSPGG  66
            K KY +MK  + S +EI +YG I ++ WF S+ ++  F+  L  LGD+S ID+ INS+GG
Sbjct  4    KAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINSSGG  63

Query  67   DVFEGQAIHSMLQRHKAKINVYVDALAGSIASVIAMAGDKITMPSNAMMMIHNPYMGMVG  126
             VFEG+AI +ML+ H AKIN+YVDALA+SIASVIAM+GD I M  N+ +MIHN+ +  VG
Sbjct  64   SVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVMTVG  123

Query  127  NAAEFRKAADDLDKITESIVSTYLAKAGDKLDDGTLRQLLDEETWLTADEALNYGLIDEV  186
            NA E+RK+AD L+K      S+YL KA D LD+  L+Q+LD ETWLTA+EAL++GLIDE+
Sbjct  124  NAEELRKTADLLEKTDAVSNSAYLDKAKD-LDQEHLKQMLDAETWLTAEEALSFGLIDEI  182

Query  187  SESKDVAACIDHQVLAHFKHVPGKIVAQSTAESPAEETKPDELL-KQKINMKL  238
              ++++AA I  +   +F +VP  +  +    +  ++    EL+   K +M L
Sbjct  183  LGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKESMSL  235

33) BL00880 in NC_006270


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  174 bits (643),  Expect = 5e-45, Method: Compositional matrix adjust.
 Identities = 100/234 (43%), Positives = 164/234 (71%), Gaps = 6/234 (2%)

Query  6    KFWEIKAAKNDAKTGEIYIYSEISSAQFWGDEVTTQTFKEDLDGLGEVSALNIYINSPGG  65
            K+ ++K  ++    GEI+IY++I S +    +VT+  FK+ LD LG++S +++ INS+GG
Sbjct  6    KYFQMK--RKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINSSGG  63

Query  66   SVFEGNSIYNIIKRHKAHVNVYVDGLAASIASVIAMSGDAIFMPANAMMMIHNPWTVAQG  125
            SVFEG++IYN++K H A +N+YVD+LAASIASVIAMSGD+IFM  N+ +MIHN+W ++ G
Sbjct  64   SVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVMTVG  123

Query  126  NAEELRKQADDMDRIRESLIEAYLGKAGEKLNRDRLIELMDAETWLTAQECLELGLCDSI  185
            NAEELRK AD +++       AYL+KA + L++++L +++DAETWLTA+E L +GL D I
Sbjct  124  NAEELRKTADLLEKTDAVSNSAYLDKAKD-LDQEHLKQMLDAETWLTAEEALSFGLIDEI  182

Query  186  EAPSAAVAKVDTQLFAKYRNTPESLLNQTKEDEKQAEKERLFREQLIAEAQTNL  239
             +++   A +  + + ++ N PE L    K+ +K +  + +   +L+  ++ ++
Sbjct  183  LGANEIAASISKEQYKRFENVPEDL---KKDVDKITKIDDVDTSELVETPKESM  233

34) BLi01550 in NC_006322


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  174 bits (643),  Expect = 5e-45, Method: Compositional matrix adjust.
 Identities = 100/234 (43%), Positives = 164/234 (71%), Gaps = 6/234 (2%)

Query  6    KFWEIKAAKNDAKTGEIYIYSEISSAQFWGDEVTTQTFKEDLDGLGEVSALNIYINSPGG  65
            K+ ++K  ++    GEI+IY++I S +    +VT+  FK+ LD LG++S +++ INS+GG
Sbjct  6    KYFQMK--RKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINSSGG  63

Query  66   SVFEGNSIYNIIKRHKAHVNVYVDGLAASIASVIAMSGDAIFMPANAMMMIHNPWTVAQG  125
            SVFEG++IYN++K H A +N+YVD+LAASIASVIAMSGD+IFM  N+ +MIHN+W ++ G
Sbjct  64   SVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVMTVG  123

Query  126  NAEELRKQADDMDRIRESLIEAYLGKAGEKLNRDRLIELMDAETWLTAQECLELGLCDSI  185
            NAEELRK AD +++       AYL+KA + L++++L +++DAETWLTA+E L +GL D I
Sbjct  124  NAEELRKTADLLEKTDAVSNSAYLDKAKD-LDQEHLKQMLDAETWLTAEEALSFGLIDEI  182

Query  186  EAPSAAVAKVDTQLFAKYRNTPESLLNQTKEDEKQAEKERLFREQLIAEAQTNL  239
             +++   A +  + + ++ N PE L    K+ +K +  + +   +L+  ++ ++
Sbjct  183  LGANEIAASISKEQYKRFENVPEDL---KKDVDKITKIDDVDTSELVETPKESM  233

35) BL03503 in NC_006270


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  172 bits (637),  Expect = 1e-44, Method: Compositional matrix adjust.
 Identities = 108/227 (48%), Positives = 155/227 (69%), Gaps = 3/227 (1%)

Query  1    MKVLNDSTAEITLYGSITGEGWF-SESSSKAFQAELKSLGDVSSIDLYINSPGGDVFEGQ  59
            MK  + S +EI +YG I ++ WF S+ ++  F+  L  LGD+S ID+ INS+GG VFEG+
Sbjct  10   MKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINSSGGSVFEGH  69

Query  60   AIHSMLQRHKAKINVYVDALAGSIASVIAMAGDKITMPSNAMMMIHNPYMGMVGNAAEFR  119
            AI +ML+ H AKIN+YVDALA+SIASVIAM+GD I M  N+ +MIHN+ +  VGNA E+R
Sbjct  70   AIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVMTVGNAEELR  129

Query  120  KAADDLDKITESIVSTYLAKAGDKLDDGTLRQLLDEETWLTADEALNYGLIDEVSESKDV  179
            K+AD L+K      S+YL KA D LD+  L+Q+LD ETWLTA+EAL++GLIDE+  ++++
Sbjct  130  KTADLLEKTDAVSNSAYLDKAKD-LDQEHLKQMLDAETWLTAEEALSFGLIDEILGANEI  188

Query  180  AACIDHQVLAHFKHVPGKIVAQSTAESPAEETKPDELL-KQKINMKL  225
            AA I  +   +F +VP  +  +    +  ++    EL+   K +M L
Sbjct  189  AASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKESMSL  235

36) GBAA_4092 in NC_007530


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  167 bits (619),  Expect = 4e-43, Method: Compositional matrix adjust.
 Identities = 104/235 (45%), Positives = 164/235 (70%), Gaps = 4/235 (1%)

Query  4    NKQNKFFQMKASANGKTADVFIYGEITKYAWEEYGEVSSITFKNELDELGDDIKTINLYI  63
            + + K+FQMK  +++K +++FIYG+I    W E ++V++  FKN LDELGD I  I++ I
Sbjct  2    SMKAKYFQMKRKSKSK-GEIFIYGDIVSDKWFE-SDVTATDFKNKLDELGD-ISEIDVHI  58

Query  64   NSPGGSVFETMAIIAMLQRHHAKIISYIDGIGASCASVLPMISDKIIMYANSMMMIHNAW  123
            NS+GGSVFE  AI  ML+ H AKI  Y+D+++AS ASV++M +D I+M  NS +MIHN+W
Sbjct  59   NSSGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSW  118

Query  124  TYASGNADQLRKAADDIERINQSMVQHYLTRAGDKLDEDTLKQLLDAETWLSAEEAMGYG  183
              + GNA++LRK+AD +E+ +      YL +A D LD++ LKQ+LDAETWL+AEEA+++G
Sbjct  119  VMTVGNAEELRKTADLLEKTDAVSNSAYLDKAKD-LDQEHLKQMLDAETWLTAEEALSFG  177

Query  184  LCDEIIPANNATACLDEKWMKEYKNIPQQLVNAQANISSNEMLERQKIAEEAKAN  238
            L DEI+ AN+ +A +     K + N+P++L +   +I+  + ++   + E +K +
Sbjct  178  LIDEILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKES  232

37) BA_4092 in NC_003997


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  167 bits (619),  Expect = 4e-43, Method: Compositional matrix adjust.
 Identities = 104/235 (45%), Positives = 164/235 (70%), Gaps = 4/235 (1%)

Query  4    NKQNKFFQMKASANGKTADVFIYGEITKYAWEEYGEVSSITFKNELDELGDDIKTINLYI  63
            + + K+FQMK  +++K +++FIYG+I    W E ++V++  FKN LDELGD I  I++ I
Sbjct  2    SMKAKYFQMKRKSKSK-GEIFIYGDIVSDKWFE-SDVTATDFKNKLDELGD-ISEIDVHI  58

Query  64   NSPGGSVFETMAIIAMLQRHHAKIISYIDGIGASCASVLPMISDKIIMYANSMMMIHNAW  123
            NS+GGSVFE  AI  ML+ H AKI  Y+D+++AS ASV++M +D I+M  NS +MIHN+W
Sbjct  59   NSSGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSW  118

Query  124  TYASGNADQLRKAADDIERINQSMVQHYLTRAGDKLDEDTLKQLLDAETWLSAEEAMGYG  183
              + GNA++LRK+AD +E+ +      YL +A D LD++ LKQ+LDAETWL+AEEA+++G
Sbjct  119  VMTVGNAEELRKTADLLEKTDAVSNSAYLDKAKD-LDQEHLKQMLDAETWLTAEEALSFG  177

Query  184  LCDEIIPANNATACLDEKWMKEYKNIPQQLVNAQANISSNEMLERQKIAEEAKAN  238
            L DEI+ AN+ +A +     K + N+P++L +   +I+  + ++   + E +K +
Sbjct  178  LIDEILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKES  232

38) BAS3804 in NC_005945


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  167 bits (619),  Expect = 4e-43, Method: Compositional matrix adjust.
 Identities = 104/235 (45%), Positives = 164/235 (70%), Gaps = 4/235 (1%)

Query  4    NKQNKFFQMKASANGKTADVFIYGEITKYAWEEYGEVSSITFKNELDELGDDIKTINLYI  63
            + + K+FQMK  +++K +++FIYG+I    W E ++V++  FKN LDELGD I  I++ I
Sbjct  2    SMKAKYFQMKRKSKSK-GEIFIYGDIVSDKWFE-SDVTATDFKNKLDELGD-ISEIDVHI  58

Query  64   NSPGGSVFETMAIIAMLQRHHAKIISYIDGIGASCASVLPMISDKIIMYANSMMMIHNAW  123
            NS+GGSVFE  AI  ML+ H AKI  Y+D+++AS ASV++M +D I+M  NS +MIHN+W
Sbjct  59   NSSGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSW  118

Query  124  TYASGNADQLRKAADDIERINQSMVQHYLTRAGDKLDEDTLKQLLDAETWLSAEEAMGYG  183
              + GNA++LRK+AD +E+ +      YL +A D LD++ LKQ+LDAETWL+AEEA+++G
Sbjct  119  VMTVGNAEELRKTADLLEKTDAVSNSAYLDKAKD-LDQEHLKQMLDAETWLTAEEALSFG  177

Query  184  LCDEIIPANNATACLDEKWMKEYKNIPQQLVNAQANISSNEMLERQKIAEEAKAN  238
            L DEI+ AN+ +A +     K + N+P++L +   +I+  + ++   + E +K +
Sbjct  178  LIDEILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKES  232

39) BCAH187_A2239 in NC_011658


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  167 bits (616),  Expect = 6e-43, Method: Compositional matrix adjust.
 Identities = 104/235 (45%), Positives = 163/235 (70%), Gaps = 4/235 (1%)

Query  4    NKQNKFFQMKASANGKTADVFIYGEITKYAWEEYGEVSSITFKNELDELGDDIETINLYI  63
            + + K+FQMK  +++K +++FIYG+I    W E ++V++  FKN LDELGD I  I++ I
Sbjct  2    SMKAKYFQMKRKSKSK-GEIFIYGDIVSDKWFE-SDVTATDFKNKLDELGD-ISEIDVHI  58

Query  64   NSPGGSVFETMAIIAMLQRHQAKVISYIDGIGASCASVLPMISDKIIMYANSMMMIHNAW  123
            NS+GGSVFE  AI  ML+ H AK+  Y+D+++AS ASV++M +D I+M  NS +MIHN+W
Sbjct  59   NSSGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSW  118

Query  124  TYASGNANQLRKAADDIERINQSMVQHYLTRAGDKLDEDTLKQLLDAETWLSAEEAMNYG  183
              + GNA++LRK+AD +E+ +      YL +A D LD++ LKQ+LDAETWL+AEEA+++G
Sbjct  119  VMTVGNAEELRKTADLLEKTDAVSNSAYLDKAKD-LDQEHLKQMLDAETWLTAEEALSFG  177

Query  184  LCDEIISENNAAACLDEKWMKEYKNVPQQLVNAQANIPSNEMLERQKIAEEAKAN  238
            L DEI++ N+ AA +     K + NVP++L +   +I   + ++   + E +K +
Sbjct  178  LIDEILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKES  232

40) TepiRe1_2604 in NC_019954


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  167 bits (616),  Expect = 6e-43, Method: Compositional matrix adjust.
 Identities = 89/202 (45%), Positives = 140/202 (70%), Gaps = 1/202 (0%)

Query  5    KFWNFKNQDEKTGELTLYGEIASATWWGDEITPKEFKADLDGLGDIDTLNIYINSPGGDV  64
            K+ + K +    GE+ +YG+I S  W   ++T+ +FK  LD LGDI  +++ INS+GG V
Sbjct  6    KYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINSSGGSV  65

Query  65   FAGQAIYSMLKRHKAHKNVYIDGLAASIASVVAMAGDTIFMPKNAMMMIHNPWTFGLGNA  124
            F G+AIY+MLK H A  N+Y+D+LAASIASV+AM+GDTIFM KN+ +MIHN+W   +GNA
Sbjct  66   FEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVMTVGNA  125

Query  125  DEFRKLAEDLDKIREGLIAAYEERS-ALTRDEIIKIMDDETWLTADECFEYGFCDVVGKE  183
            +E+RK A+ L+K      +AY +++  L ++++ +++D ETWLTA+E + +G+ D +   
Sbjct  126  EELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLIDEILGA  185

Query  184  KQMAACIDKTLLTKYRNTPKEL  205
            +++AA I K    ++ N P +L
Sbjct  186  NEIAASISKEQYKRFENVPEDL  207

41) TepRe1_2422 in NC_015519


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  167 bits (616),  Expect = 6e-43, Method: Compositional matrix adjust.
 Identities = 89/202 (45%), Positives = 140/202 (70%), Gaps = 1/202 (0%)

Query  5    KFWNFKNQDEKTGELTLYGEIASATWWGDEITPKEFKADLDGLGDIDTLNIYINSPGGDV  64
            K+ + K +    GE+ +YG+I S  W   ++T+ +FK  LD LGDI  +++ INS+GG V
Sbjct  6    KYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINSSGGSV  65

Query  65   FAGQAIYSMLKRHKAHKNVYIDGLAASIASVVAMAGDTIFMPKNAMMMIHNPWTFGLGNA  124
            F G+AIY+MLK H A  N+Y+D+LAASIASV+AM+GDTIFM KN+ +MIHN+W   +GNA
Sbjct  66   FEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVMTVGNA  125

Query  125  DEFRKLAEDLDKIREGLIAAYEERS-ALTRDEIIKIMDDETWLTADECFEYGFCDVVGKE  183
            +E+RK A+ L+K      +AY +++  L ++++ +++D ETWLTA+E + +G+ D +   
Sbjct  126  EELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLIDEILGA  185

Query  184  KQMAACIDKTLLTKYRNTPKEL  205
            +++AA I K    ++ N P +L
Sbjct  186  NEIAASISKEQYKRFENVPEDL  207

42) clpP in NC_014727


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  165 bits (610),  Expect = 2e-42, Method: Compositional matrix adjust.
 Identities = 101/204 (50%), Positives = 148/204 (73%), Gaps = 1/204 (0%)

Query  4    PKFLDYKALSNSEVEIDIEGEITSSVYNETQTSASQFRDLLKQIGDVKTINLHINSPGGD  63
            +K+++ K  S+S  EI I G+I S    E++ +A++F++ L ++GD+  I++HINS+GG 
Sbjct  5    AKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINSSGGS  64

Query  64   VFEGVAIYNMLKQSKADINVYIDGLAASIASVIAMAGNTIIMPENSMLMIHNPWTIAQGN  123
            VFEG AIYNMLK   A IN+Y+D+LAASIASVIAM+G+TI+M  NS LMIHN+W ++ GN
Sbjct  65   VFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVMTVGN  124

Query  124  SKELRKIADDMDKMSESIKTSYLSKSNDKLDLDTLNQLMDEETWLTAKEATEYGLADEVL  183
            + ELRK AD ++K     +++YL K++D LD + L+Q++D ETWLTA EA  +GL DE+L
Sbjct  125  AEELRKTADLLEKTDAVSNSAYLDKAKD-LDQEHLKQMLDAETWLTAEEALSFGLIDEIL  183

Query  184  EPVKMVACLTEEQAKSFKHAPEAL  207
             +  + A ++ EQ K F + PE L
Sbjct  184  GANEIAASISKEQYKRFENVPEDL  207

43) CKL_4067 in NC_009466


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  163 bits (604),  Expect = 6e-42, Method: Compositional matrix adjust.
 Identities = 114/238 (48%), Positives = 177/238 (75%), Gaps = 5/238 (2%)

Query  1    MAQKQKFWQMKMSADDDKQADIFIYGEIVSYKWDDTDTTAASFKKDLDDLGDVNTINLHI  60
            M+ K K+ QMK  +    +++IFIYG+IVS KW ++D TA+ FK+ LD+LGD++ I++HI
Sbjct  1    MSMKAKYFQMKRKSKS--KGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHI  58

Query  61   NSPGGNVFEGVAIGNMLKQHKAQVNVYVDalaasiasiiamsGNTILMPKNSMMMIHNPL  120
            NS+GG+VFEG AI NMLK H A++N+YVDALAASIAS+IAMSG+TI+M KNS +MIHN+ 
Sbjct  59   NSSGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSW  118

Query  121  SIAWGNAKDFRKKADDLDKIGLSMQTTYLNKAGDKLDQDTLQKLMDNDTWLSADDAYSYG  180
             ++ GNA ++RK AD L+K +   +++YL+KA D LDQ+ L++++D +TWL+A++A S+G
Sbjct  119  VMTVGNAEELRKTADLLEKTDAVSNSAYLDKAKD-LDQEHLKQMLDAETWLTAEEALSFG  177

Query  181  LCDVVEEENNIAACISEELFSKYRNVPKTLLTRNITNSISVLEMGERKKLAEQARQNI  238
            L D +   N+IAA IS E + ++ NVP  L  ++  + I+ ++  +   L E +++++
Sbjct  178  LIDEILGANEIAASISKEQYKRFENVPEDL--KKDVDKITKIDDVDTSELVETPKESM  233

44) CKR_P47 in NC_011836


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  163 bits (604),  Expect = 6e-42, Method: Compositional matrix adjust.
 Identities = 114/238 (48%), Positives = 177/238 (75%), Gaps = 5/238 (2%)

Query  1    MAQKQKFWQMKMSADDDKQADIFIYGEIVSYKWDDTDTTAASFKKDLDDLGDVNTINLHI  60
            M+ K K+ QMK  +    +++IFIYG+IVS KW ++D TA+ FK+ LD+LGD++ I++HI
Sbjct  1    MSMKAKYFQMKRKSKS--KGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHI  58

Query  61   NSPGGNVFEGVAIGNMLKQHKAQVNVYVDalaasiasiiamsGNTILMPKNSMMMIHNPL  120
            NS+GG+VFEG AI NMLK H A++N+YVDALAASIAS+IAMSG+TI+M KNS +MIHN+ 
Sbjct  59   NSSGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSW  118

Query  121  SIAWGNAKDFRKKADDLDKIGLSMQTTYLNKAGDKLDQDTLQKLMDNDTWLSADDAYSYG  180
             ++ GNA ++RK AD L+K +   +++YL+KA D LDQ+ L++++D +TWL+A++A S+G
Sbjct  119  VMTVGNAEELRKTADLLEKTDAVSNSAYLDKAKD-LDQEHLKQMLDAETWLTAEEALSFG  177

Query  181  LCDVVEEENNIAACISEELFSKYRNVPKTLLTRNITNSISVLEMGERKKLAEQARQNI  238
            L D +   N+IAA IS E + ++ NVP  L  ++  + I+ ++  +   L E +++++
Sbjct  178  LIDEILGANEIAASISKEQYKRFENVPEDL--KKDVDKITKIDDVDTSELVETPKESM  233

45) MC28_3171 in NC_018693


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  161 bits (594),  Expect = 3e-41, Method: Compositional matrix adjust.
 Identities = 101/227 (45%), Positives = 159/227 (71%), Gaps = 4/227 (1%)

Query  1    MKASANGKTADVFIYGEITKYAWEEYGEVSSITFKNELDELGDGIETINLYINSPGGSVF  60
            MK  +++K +++FIYG+I    W E ++V++  FKN LDELGD I  I++ INS+GGSVF
Sbjct  10   MKRKSKSK-GEIFIYGDIVSDKWFE-SDVTATDFKNKLDELGD-ISEIDVHINSSGGSVF  66

Query  61   ETMAIIAMLQRHPAKVISYIDGIGASCASVLPMISDKIIMYANSMLMVHNAWTYASGNAD  120
            E  AI  ML+ HPAK+  Y+D+++AS ASV++M +D I+M  NS LM+HN+W  + GNA+
Sbjct  67   EGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVMTVGNAE  126

Query  121  QLRKAADDIERINQSMVQHYLTRAGDKLGEDILKQLLDAETWLSADEAMEYGLCDEIISA  180
            +LRK+AD +E+ +      YL +A D L+++ LKQ+LDAETWL+A+EA+ +GL DEI++A
Sbjct  127  ELRKTADLLEKTDAVSNSAYLDKAKD-LDQEHLKQMLDAETWLTAEEALSFGLIDEILGA  185

Query  181  NNAAACLDEKWMKEYKNVPQQLVNTQANISSNEMLERQKIAEEAKAN  227
            N+ AA +     K + NVP++L +   +I+  + ++   + E +K +
Sbjct  186  NEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKES  232

46) CLB_2447 in NC_009697


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  161 bits (594),  Expect = 4e-41, Method: Compositional matrix adjust.
 Identities = 115/230 (50%), Positives = 161/230 (70%), Gaps = 7/230 (3%)

Query  5    KFWEVKNSTENENIGEAYIYGDIVSYKWDDTDTTAKSFKEDLDSLGDIDTLNIYINSPGG  64
            K+ ++K  + +   GE +IYGDIVS KW ++D TA  FK+ LD LGDI  +++ INS+GG
Sbjct  6    KYFQMKRKSKSK--GEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINSSGG  63

Query  65   SVFQGQAIYNIIKRHKAKINIHVDgvaasiasviamagNTIFMPKNSMMMIHNPWTFAYG  124
            SVF+G+AIYN++K H AKINI VD++AASIASVIAM+G+TIFM KNS +MIHN+W  + G
Sbjct  64   SVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVMTVG  123

Query  125  NAKELRKQADDLDKIRESLIEAYLSKAGDKLSRETLIGIMDNETWLTAQECYDYGLCDEL  184
            NA ELRK AD L+K       AYL KA D L +E L  ++D ETWLTA+E   +GL DE+
Sbjct  124  NAEELRKTADLLEKTDAVSNSAYLDKAKD-LDQEHLKQMLDAETWLTAEEALSFGLIDEI  182

Query  185  VEEKEIAASINTELFAKYKNTPKELLNKTEKQNKPIKNTEKIEKDEEIEA  234
            +  +EIAASI+ E + ++ N P +L +  +K    I + + ++  E +E+
Sbjct  183  LGANEIAASISKEQYKRFENVPEDLKKDVDK----ITKIDDVDTSELVET  228

47) BAA_4117 in NC_012659


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  160 bits (589),  Expect = 9e-41, Method: Compositional matrix adjust.
 Identities = 101/227 (45%), Positives = 158/227 (70%), Gaps = 4/227 (1%)

Query  1    MKASANGKTADVFIYGEITKYAWEEYGEVSSITFKNELDELGDDIKTINLYINSPGGSVF  60
            MK  +++K +++FIYG+I    W E ++V++  FKN LDELGD I  I++ INS+GGSVF
Sbjct  10   MKRKSKSK-GEIFIYGDIVSDKWFE-SDVTATDFKNKLDELGD-ISEIDVHINSSGGSVF  66

Query  61   ETMAIIAMLQRHHAKIISYIDGIGASCASVLPMISDKIIMYANSMMMIHNAWTYASGNAD  120
            E  AI  ML+ H AKI  Y+D+++AS ASV++M +D I+M  NS +MIHN+W  + GNA+
Sbjct  67   EGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVMTVGNAE  126

Query  121  QLRKAADDIERINQSMVQHYLTRAGDKLDEDTLKQLLDAETWLSAEEAMGYGLCDEIIPA  180
            +LRK+AD +E+ +      YL +A D LD++ LKQ+LDAETWL+AEEA+++GL DEI+ A
Sbjct  127  ELRKTADLLEKTDAVSNSAYLDKAKD-LDQEHLKQMLDAETWLTAEEALSFGLIDEILGA  185

Query  181  NNATACLDEKWMKEYKNIPQQLVNAQANISSNEMLERQKIAEEAKAN  227
            N+ +A +     K + N+P++L +   +I+  + ++   + E +K +
Sbjct  186  NEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKES  232

48) BAMEG_0537 in NC_012581


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  160 bits (589),  Expect = 9e-41, Method: Compositional matrix adjust.
 Identities = 101/227 (45%), Positives = 158/227 (70%), Gaps = 4/227 (1%)

Query  1    MKASANGKTADVFIYGEITKYAWEEYGEVSSITFKNELDELGDDIKTINLYINSPGGSVF  60
            MK  +++K +++FIYG+I    W E ++V++  FKN LDELGD I  I++ INS+GGSVF
Sbjct  10   MKRKSKSK-GEIFIYGDIVSDKWFE-SDVTATDFKNKLDELGD-ISEIDVHINSSGGSVF  66

Query  61   ETMAIIAMLQRHHAKIISYIDGIGASCASVLPMISDKIIMYANSMMMIHNAWTYASGNAD  120
            E  AI  ML+ H AKI  Y+D+++AS ASV++M +D I+M  NS +MIHN+W  + GNA+
Sbjct  67   EGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVMTVGNAE  126

Query  121  QLRKAADDIERINQSMVQHYLTRAGDKLDEDTLKQLLDAETWLSAEEAMGYGLCDEIIPA  180
            +LRK+AD +E+ +      YL +A D LD++ LKQ+LDAETWL+AEEA+++GL DEI+ A
Sbjct  127  ELRKTADLLEKTDAVSNSAYLDKAKD-LDQEHLKQMLDAETWLTAEEALSFGLIDEILGA  185

Query  181  NNATACLDEKWMKEYKNIPQQLVNAQANISSNEMLERQKIAEEAKAN  227
            N+ +A +     K + N+P++L +   +I+  + ++   + E +K +
Sbjct  186  NEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKES  232

49) H9401_3902 in NC_017729


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  160 bits (589),  Expect = 9e-41, Method: Compositional matrix adjust.
 Identities = 101/227 (45%), Positives = 158/227 (70%), Gaps = 4/227 (1%)

Query  1    MKASANGKTADVFIYGEITKYAWEEYGEVSSITFKNELDELGDDIKTINLYINSPGGSVF  60
            MK  +++K +++FIYG+I    W E ++V++  FKN LDELGD I  I++ INS+GGSVF
Sbjct  10   MKRKSKSK-GEIFIYGDIVSDKWFE-SDVTATDFKNKLDELGD-ISEIDVHINSSGGSVF  66

Query  61   ETMAIIAMLQRHHAKIISYIDGIGASCASVLPMISDKIIMYANSMMMIHNAWTYASGNAD  120
            E  AI  ML+ H AKI  Y+D+++AS ASV++M +D I+M  NS +MIHN+W  + GNA+
Sbjct  67   EGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVMTVGNAE  126

Query  121  QLRKAADDIERINQSMVQHYLTRAGDKLDEDTLKQLLDAETWLSAEEAMGYGLCDEIIPA  180
            +LRK+AD +E+ +      YL +A D LD++ LKQ+LDAETWL+AEEA+++GL DEI+ A
Sbjct  127  ELRKTADLLEKTDAVSNSAYLDKAKD-LDQEHLKQMLDAETWLTAEEALSFGLIDEILGA  185

Query  181  NNATACLDEKWMKEYKNIPQQLVNAQANISSNEMLERQKIAEEAKAN  227
            N+ +A +     K + N+P++L +   +I+  + ++   + E +K +
Sbjct  186  NEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKES  232

50) BCN_2052 in NC_016771


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  158 bits (585),  Expect = 2e-40, Method: Compositional matrix adjust.
 Identities = 101/227 (45%), Positives = 157/227 (70%), Gaps = 4/227 (1%)

Query  1    MKASANGKTADVFIYGEITKYAWEEYGEVSSITFKNELDELGDDIETINLYINSPGGSVF  60
            MK  +++K +++FIYG+I    W E ++V++  FKN LDELGD I  I++ INS+GGSVF
Sbjct  10   MKRKSKSK-GEIFIYGDIVSDKWFE-SDVTATDFKNKLDELGD-ISEIDVHINSSGGSVF  66

Query  61   ETMAIIAMLQRHQAKVISYIDGIGASCASVLPMISDKIIMYANSMMMIHNAWTYASGNAN  120
            E  AI  ML+ H AK+  Y+D+++AS ASV++M +D I+M  NS +MIHN+W  + GNA+
Sbjct  67   EGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVMTVGNAE  126

Query  121  QLRKAADDIERINQSMVQHYLTRAGDKLDEDTLKQLLDAETWLSAEEAMNYGLCDEIISE  180
            +LRK+AD +E+ +      YL +A D LD++ LKQ+LDAETWL+AEEA+++GL DEI++ 
Sbjct  127  ELRKTADLLEKTDAVSNSAYLDKAKD-LDQEHLKQMLDAETWLTAEEALSFGLIDEILGA  185

Query  181  NNAAACLDEKWMKEYKNVPQQLVNAQANIPSNEMLERQKIAEEAKAN  227
            N+ AA +     K + NVP++L +   +I   + ++   + E +K +
Sbjct  186  NEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKES  232

51) CLD_2060 in NC_010516


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  154 bits (568),  Expect = 4e-39, Method: Compositional matrix adjust.
 Identities = 111/201 (56%), Positives = 147/201 (74%), Gaps = 3/201 (1%)

Query  5    KFWEVKNSSENENIGETYIYGDIVSYKWDDTDTTAKSFKEDLDSLGDIDTLNIYINSPGG  64
            K+ ++K  S +   GE +IYGDIVS KW ++D TA  FK+ LD LGDI  +++ INS+GG
Sbjct  6    KYFQMKRKSKSK--GEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINSSGG  63

Query  65   SVFQGTAIYNIIKRHKAKINIHVDgvaasiasviamagDTIFMPKNSMMMIHNPWTFAWG  124
            SVF+G AIYN++K H AKINI VD++AASIASVIAM+GDTIFM KNS +MIHN+W  + G
Sbjct  64   SVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVMTVG  123

Query  125  NANELRKQADDLDKIRESLIEAYLSKAGDKLSRETLIEIMDNETWLTAQECYDYGLCDEL  184
            NA+ELRK AD L+K       AYL KA D L +E L +++D ETWLTA+E   +GL DE+
Sbjct  124  NAEELRKTADLLEKTDAVSNSAYLDKAKD-LDQEHLKQMLDAETWLTAEEALSFGLIDEI  182

Query  185  VEEKEIAASINTELFAKYKNT  205
            +  +EIAASI+ E + ++ N 
Sbjct  183  LGANEIAASISKEQYKRFENV  203

52) clpP1 in NC_016784


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  153 bits (563),  Expect = 9e-39, Method: Compositional matrix adjust.
 Identities = 94/203 (47%), Positives = 149/203 (74%), Gaps = 2/203 (0%)

Query  9    KYWNMKNLNDKTAEINLYGEITGEGWF-SESSSKMFQEDLRALGDVSEINLYINSPGGDV  67
            KY +MK  +   +EI +YG+I ++ WF S+ ++  F++ L  LGD+SEI++ INS+GG V
Sbjct  6    KYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINSSGGSV  65

Query  68   FEGQAIHSMLQRHSARINVHIDGLAASIASVIAMAGDTITMPDNAMFMIHNPYMGMLGNA  127
            FEG+AI +ML+ H+A+IN+ +D+LAASIASVIAM+GDTI M  N+ +MIHN+ +  +GNA
Sbjct  66   FEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVMTVGNA  125

Query  128  SEFRKAADDLDKVTDSIVSTYLNKTDGKISEEEVRKLMNEETWLTAEESQTYGFCDVKTD  187
             E+RK+AD L+K      S+YL+K+ + + +E+++++++ ETWLTAEE+ ++G+ D   +
Sbjct  126  EELRKTADLLEKTDAVSNSAYLDKAKD-LDQEHLKQMLDAETWLTAEEALSFGLIDEILG  184

Query  188  KKEIAACKDKHVLAKFKNVPKDI  210
             +EIAA   K+   +F NVP D+
Sbjct  185  ANEIAASISKEQYKRFENVPEDL  207

53) EHR_00640 in NC_018081


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  150 bits (552),  Expect = 7e-38, Method: Compositional matrix adjust.
 Identities = 101/204 (50%), Positives = 146/204 (72%), Gaps = 2/204 (0%)

Query  3    KFWECKQSVDQDEADIYIFGEITSFKWDESDTTASSFQKDLKELGDVKKINLHVNSPGGS  62
            K+ + K+   +  ++I+I+G+I S KW ESD TA+ F++ L ELGD+  I++H+NS+GGS
Sbjct  6    KYFQMKRK-SKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINSSGGS  64

Query  63   VFEGIAIGNMLKQHKAYVTAYVDALaasiasvivvsCDKVIMPENSMMMIHNPWSFAIGN  122
            VFEG AI NMLK H A +  YVDALAASIASVI +S D ++M  NS +MIHN+W  ++GN
Sbjct  65   VFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVMTVGN  124

Query  123  ANELRKQADDLDRIAESSVVTYLAKAGEKLTEEKIKQIMAEETWLSAKEAFDYGLCDIVE  182
            A+ELRK AD L++    S  +YL KA + L +E +KQ++  ETWL+A EA+ +GL D + 
Sbjct  125  AEELRKTADLLEKTDAVSNSAYLDKAKD-LDQEHLKQMLDAETWLTAEEALSFGLIDEIL  183

Query  183  SSNQIAASISEKLFSNYQRVPEKF  206
            ++N+IAASIS   +  ++ VPE +
Sbjct  184  GANEIAASISKEQYKRFENVPEDL  207

54) CLJU_c03550 in NC_014328


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  147 bits (542),  Expect = 6e-37, Method: Compositional matrix adjust.
 Identities = 95/198 (48%), Positives = 145/198 (74%), Gaps = 2/198 (1%)

Query  1    MSKGKKFWTFNAKENSDEGELLLYGDISDSTWWGDEITPKNFKEELDSLGDIKTLNVYIN  60
            MS   K+   + K +S  GE+++YGDI    W   ++T+ +FK+ LD LGDI  ++V IN
Sbjct  1    MSMKAKYFQMKRKSKSK-GEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHIN  59

Query  61   SGGGDVFAGQAIYSMLKRHSATVNVYVDGLaasiasiiamaGDSVKMPKNAMLMVHNPWS  120
            S+GG VF G+AIY+MLK H+A +N+YVD+LAASIAS+IAM+GD++ M KN+ LM+HN+W 
Sbjct  60   SSGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWV  119

Query  121  YAMGNAKDFRKLADDLDKVRESMISVYEDKT-GMEKESIVELLDAETWMTAEEAVEFGFA  179
             ++GNA ++RK AD L+K      S Y DK+ ++++E + ++LDAETW+TAEEA+ FG+ 
Sbjct  120  MTVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLI  179

Query  180  DEIEEEKQVAASLNNRIF  197
            DEI   +++AAS+++  +
Sbjct  180  DEILGANEIAASISKEQY  197

55) Clo1100_1163 in NC_016791


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  139 bits (509),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 86/198 (44%), Positives = 144/198 (73%), Gaps = 3/198 (1%)

Query  22   LEIKNQSNDLSELFIYGDIMNYKWDESDVIPQDIADFLKELDGKSKLNIYINSGGGSVFA  81
            +++K +S+  +E+FIYGDI++ KW ESDV + D+ + L EL++ S +++ INS+GGSVF 
Sbjct  8    FQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINSSGGSVFE  67

Query  82   GLAIYNQLKRHTAEKTVYVDGVAASIASVIAMCGQRLIIPSNAFLMIHKAWSLSVGNAND  141
            G AIYN LK H A   +YVD++AASIASVIAM G+ +++  N+FLMIH++W ++VGNA++
Sbjct  68   GHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVMTVGNAEE  127

Query  142  FRKAAEDLERIDEGILNIYKENLADGVDIETIKELVNSETWLTGEEASKYFNIEVV--EE  199
            +RK+A+ LE+ D    + Y ++ A ++D E +K+++++ETWLT+EEA  +  I+ +   +
Sbjct  128  LRKTADLLEKTDAVSNSAYLDK-AKDLDQEHLKQMLDAETWLTAEEALSFGLIDEILGAN  186

Query  200  SKAAACASDYFSKYKNSP  217
              AA+ + + + ++ N P
Sbjct  187  EIAASISKEQYKRFENVP  204

56) Z3097 in NC_002655


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  136 bits (501),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 93/229 (41%), Positives = 154/229 (68%), Gaps = 7/229 (3%)

Query  15   SMKNKSWFRMQAGGPGDADIYIYDEIGF--W---GVTAKQFVSELNALGDITHINLHINS  69
            SMK K  F+M+  + + ++I+IY++I    W   +VTA +F + L+ LGDI++I++HINS
Sbjct  2    SMKAK-YFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS  60

Query  70   PGGDVFEGIAIFNALKNQGATITVYVDgvaasmasviamagDTVIMPENAFMMIHKPWGF  129
            +GG VFEG AI+N LK + A I +YVD++AAS+ASVIAM+GDT++M  N+F+MIH++W  
Sbjct  61   SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM  120

Query  130  SGGDAEDMRSYADLLDKVESVLLPAYAQKTGKTTDE-IAAMLADETWMSGAECLAHGFAD  188
            + G+AE++R  ADLL+K ++V  +AY +K+    +E +  ML  ETW+++ E L+ G+ D
Sbjct  121  TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID  180

Query  189  QVTPAVEAMACIQSKRTEEFKKMPESIRNMITPPRNSAPRDTTVTIPAP  237
            ++  A E  A I   +   F ++PE +++ +    +    DT+  + +P
Sbjct  181  EILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETP  229

57) CLL_A2258 in NC_010674


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  132 bits (485),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 86/202 (43%), Positives = 138/202 (69%), Gaps = 10/202 (4%)

Query  6    FSIKQQANKPNVLDIYIYDNVEGDSYNWWTGEKMESETSANYIKQVLESNQSTSEINLYI  65
            F +K++++     +I+IY+++ +D  +W      ES+ +A  +K+ L+     SEI++ I
Sbjct  8    FQMKRKSKSKG--EIFIYGDIVSD--KW-----FESDVTATDFKNKLDELGDISEIDVHI  58

Query  66   NSYGGEVKEGLGIYNQLKRHPAQVNVYIDGFACSIASVIAMVGDKVVMGTNALMMIHHAS  125
            NS GG V EG +IYN LK HPA++N+Y+D++A SIASVIAM GD + M  N+++MIH++ 
Sbjct  59   NSSGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSW  118

Query  126  IGCYGNAEELRKAANDVEVIDQASCSSYLTKAGEKLDEATLKQLLDNQTWLNASQCLEYG  185
            +   GNAEELRK+A+ +E  D  S S+YL KA + LD+  LKQ+LD +TWL A + L +G
Sbjct  119  VMTVGNAEELRKTADLLEKTDAVSNSAYLDKAKD-LDQEHLKQMLDAETWLTAEEALSFG  177

Query  186  LCDEIAGQEDKTIEAAQQRFKQ  207
            L DEI G ++ +   +++++K+
Sbjct  178  LIDEILGANEIAASISKEQYKR  199

58) Clopa_0340 in NC_021182


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  132 bits (483),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 86/199 (44%), Positives = 142/199 (72%), Gaps = 9/199 (4%)

Query  8    IKQSAQSNAMDLYIYDDVEGDSTNWWTGETTVSETSANYIKSQLDAAIDIQNINIYINSY  67
            +K+ ++S++ +++IY+D+ +D  +W  ++ T ++     +K++LD   DI +I++ INS 
Sbjct  10   MKRKSKSKG-EIFIYGDIVSD--KWFESDVTATD-----FKNKLDELGDISEIDVHINSS  61

Query  68   GGEVKEGLAIYNQLKRHPAQKTVYVDGFACSIASVIAMAGDKVIMGPNTLMMIHHASMGA  127
            GG V EG AIYN LK HPA+  +YVD++A SIASVIAM+GD ++M  N+++MIH++ + +
Sbjct  62   GGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVMT  121

Query  128  WGNAEELRKAANDVETIDSASCSSYLAKAGDKLTPEKLTELLDAQTWLNAEQCIQYGLAD  187
             GNAEELRK+A+ +E  D+ S S+YL KA D L  E L ++LDA+TWL AE+ + +GL D
Sbjct  122  VGNAEELRKTADLLEKTDAVSNSAYLDKAKD-LDQEHLKQMLDAETWLTAEEALSFGLID  180

Query  188  EIAGKEDPVIVAAQQRFKQ  206
            EI G ++     +++++K+
Sbjct  181  EILGANEIAASISKEQYKR  199

59) HD73_2279 in NC_020238


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  129 bits (473),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 89/218 (41%), Positives = 159/218 (73%), Gaps = 6/218 (2%)

Query  8    FTIKNQTDSSADLFIYGDIINNTGWKWDDSDVMPDDVKNILGQLDDKSNLNIYVNSGGGS  67
            F +K ++ S +++FIYGDI+++   KW +SDV + D KN L++L+D S++++ +NS+GGS
Sbjct  8    FQMKRKSKSKGEIFIYGDIVSD---KWFESDVTATDFKNKLDELGDISEIDVHINSSGGS  64

Query  68   VFAGLAIYNMLKRNKAQKTVYVDgvaasiasvialagDRVVVPSNAFLMIHKPWTYAAGN  127
            VF G AIYNMLK + A+  +YVD++AASIASVIA++GD + +  N+FLMIH++W  + GN
Sbjct  65   VFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVMTVGN  124

Query  128  AIDLRKAAEDLDNIETGIMNVYKENLKEGIEIEEIQQLVDAETWLSGEEAEKY-FNIEVV  186
            A +LRK+A+ L++ ++   + Y ++ K+ ++ E+++Q++DAETWL++EEA  + +  E++
Sbjct  125  AEELRKTADLLEKTDAVSNSAYLDKAKD-LDQEHLKQMLDAETWLTAEEALSFGLIDEIL  183

Query  187  EAKEVAAC-SSDYFDKYQKTPNKIVAKAPSISKKDNNE  223
             A+E+AA  S + + ++++ P+ +      I+K D+ +
Sbjct  184  GANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVD  221

60) HD73_5257 in NC_020238


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  129 bits (473),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 89/218 (41%), Positives = 159/218 (73%), Gaps = 6/218 (2%)

Query  8    FTIKNQTDSSADLFIYGDIINNTGWKWDDSDVMPDDVKNILGQLDDKSNLNIYVNSGGGS  67
            F +K ++ S +++FIYGDI+++   KW +SDV + D KN L++L+D S++++ +NS+GGS
Sbjct  8    FQMKRKSKSKGEIFIYGDIVSD---KWFESDVTATDFKNKLDELGDISEIDVHINSSGGS  64

Query  68   VFAGLAIYNMLKRNKAQKTVYVDgvaasiasvialagDRVVVPSNAFLMIHKPWTYAAGN  127
            VF G AIYNMLK + A+  +YVD++AASIASVIA++GD + +  N+FLMIH++W  + GN
Sbjct  65   VFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVMTVGN  124

Query  128  AIDLRKAAEDLDNIETGIMNVYKENLKEGIEIEEIQQLVDAETWLSGEEAEKY-FNIEVV  186
            A +LRK+A+ L++ ++   + Y ++ K+ ++ E+++Q++DAETWL++EEA  + +  E++
Sbjct  125  AEELRKTADLLEKTDAVSNSAYLDKAKD-LDQEHLKQMLDAETWLTAEEALSFGLIDEIL  183

Query  187  EAKEVAAC-SSDYFDKYQKTPNKIVAKAPSISKKDNNE  223
             A+E+AA  S + + ++++ P+ +      I+K D+ +
Sbjct  184  GANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVD  221

61) APECO78_11525 in NC_020163


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  127 bits (464),  Expect = 7e-31, Method: Compositional matrix adjust.
 Identities = 86/200 (43%), Positives = 136/200 (68%), Gaps = 6/200 (3%)

Query  1    MQAGHQSDADIYIYDEIGF--W---GVTAKQFISDLNALGDITHINLHINSPGGDVFEGI  55
            M+   +S ++I+IY++I    W   +VTA +F + L+ LGDI++I++HINS+GG VFEG 
Sbjct  10   MKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINSSGGSVFEGH  69

Query  56   AIFNALKTHGASITVYVDGvaasmasviamvGNPVIMPENSFMMIHKPFGFTGGDAEDMR  115
            AI+N LK H A I +YVD++AAS+ASVIAM G+ ++M  NSF+MIH++   T G+AE++R
Sbjct  70   AIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVMTVGNAEELR  129

Query  116  TYADLLDKVEAVLLPAYAQKTGKTTDE-IAAMLADETWMSGAECLAQGFADQVTPAVKAM  174
              ADLL+K +AV  +AY +K+    +E +  ML  ETW+++ E L+ G+ D++  A    
Sbjct  130  KTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLIDEILGANEIA  189

Query  175  ACIQSKRTEEFKKMPESIRN  194
            A I   +   F ++PE +++
Sbjct  190  ASISKEQYKRFENVPEDLKK  209

62) BTF1_15155 in NC_018508


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  126 bits (461),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 89/218 (41%), Positives = 156/218 (72%), Gaps = 6/218 (2%)

Query  8    FTIKNQTDSSADLFIYGDIINNTGWKWDDSDVMPDDVKNILGQLDDKSNLNIYVNSGGGS  67
            F +K ++ S +++FIYGDI+++   KW +SDV + D KN L++L+D S++++ +NS+GGS
Sbjct  8    FQMKRKSKSKGEIFIYGDIVSD---KWFESDVTATDFKNKLDELGDISEIDVHINSSGGS  64

Query  68   VFAGLAIYNMLKRNKAQKTVYVDgvaasiasvialagDRVVVPSNAFLMVHKPWTVSRGN  127
            VF G AIYNMLK + A+  +YVD++AASIASVIA++GD + +  N+FLM+H++W ++ GN
Sbjct  65   VFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVMTVGN  124

Query  128  ANVLRKMAEDLDNLEAGIMNVYKENLKEGIEMEVIQQLVDAETWLSGEEAEKY-FNIEVV  186
            A+ LRK A+ L++ +A   + Y ++ K+ ++ E ++Q++DAETWL++EEA  + +  E++
Sbjct  125  AEELRKTADLLEKTDAVSNSAYLDKAKD-LDQEHLKQMLDAETWLTAEEALSFGLIDEIL  183

Query  187  EAKEVAAC-SSDYFDKYQKTPSKVVAKAPSIPKKDNNE  223
             A+E+AA  S + + ++++ P  +      I K D+ +
Sbjct  184  GANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVD  221

63) HD73_0786 in NC_020238


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  126 bits (463),  Expect = 8e-31, Method: Compositional matrix adjust.
 Identities = 89/218 (41%), Positives = 158/218 (73%), Gaps = 6/218 (2%)

Query  8    FTIKNQTDSSADLFIYGDIINNTGWKWDDSDVMPDDVKNILGQLDDKSNLNIYVNSGGGS  67
            F +K ++ S +++FIYGDI+++   KW +SDV + D KN L++L+D S++++ +NS+GGS
Sbjct  8    FQMKRKSKSKGEIFIYGDIVSD---KWFESDVTATDFKNKLDELGDISEIDVHINSSGGS  64

Query  68   VFAGLAIYNMLKRNKAQKTVYVDgvaasiasvialagDRVVVPSNAFLMVHKPWTVSRGN  127
            VF G AIYNMLK + A+  +YVD++AASIASVIA++GD + +  N+FLM+H++W ++ GN
Sbjct  65   VFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVMTVGN  124

Query  128  ANVLRKMAEDLDNLEAGIMNVYKENLKEGIEIEVIQQLVDAETWLSGEEAEKY-FNIEVV  186
            A+ LRK A+ L++ +A   + Y ++ K+ ++ E ++Q++DAETWL++EEA  + +  E++
Sbjct  125  AEELRKTADLLEKTDAVSNSAYLDKAKD-LDQEHLKQMLDAETWLTAEEALSFGLIDEIL  183

Query  187  EAKEVAAC-SSDYFDKYQKTPNKIVAKAPSISKKDNNE  223
             A+E+AA  S + + ++++ P+ +      I+K D+ +
Sbjct  184  GANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVD  221

64) DGI_2054 in NC_022444


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  123 bits (450),  Expect = 9e-30, Method: Compositional matrix adjust.
 Identities = 88/199 (45%), Positives = 145/199 (73%), Gaps = 6/199 (3%)

Query  1    MKPKGFHVAAQGK-RGEVWIYEDI-GEGWL-GGLSAKRFADEIKALGKVSHITVHLNSAG  57
            MK+K F++  ++K +GE+ IY DI ++ W+ ++++A  F + +  LG +S+I VH+NS+G
Sbjct  3    MKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINSSG  62

Query  58   GSVFDGTAIYNTLRKHPARVEVEidglaasiasiialagdEVRMAANGFFMIHNPWVVAA  117
            GSVF+G AIYN L+ HPA++++ +D+LAASIAS+IA++GD + M  N+F+MIHN+WV++ 
Sbjct  63   GSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVMTV  122

Query  118  GTALELREMATTLDKVQGQLLKTYCDRT-GLGADVVGAMMDAETWMTAEEALAQGFIDGV  176
            G A ELR  A  L+K ++    +Y D++ +L+ + +  M+DAETW+TAEEAL+ G+ID +
Sbjct  123  GNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLIDEI  182

Query  177  AGEIAVAAFAHVDMQKFKR  195
             G   +A  A +  +++KR
Sbjct  183  LGANEIA--ASISKEQYKR  199

65) LMHCC_2567 in NC_011660


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  100 bits (364),  Expect = 6e-23, Method: Compositional matrix adjust.
 Identities = 87/209 (42%), Positives = 139/209 (67%), Gaps = 10/209 (4%)

Query  9    FNFKKDTESNTAEIDIYGDIVADGYQWYESDITSFDFKKDLDALGDVSKIYVNINSNGGF  68
            F+ K+ + S+ +EI IYGDIV+D  +W+ESD+T+ DFK+ LD LGD+S I V+INS+GG 
Sbjct  8    FQMKRKSKSK-GEIFIYGDIVSD--KWFESDVTATDFKNKLDELGDISEIDVHINSSGGS  64

Query  69   VYEGQAIYNQLVRHPAQIHVRIDgmaasiasviamagDIIEMPANAQMMIHEPAGGAFGN  128
            V+EG+AIYN L  HPA+I++ +D++AASIASVIAM+GD I M  N+ +MIH++   + GN
Sbjct  65   VFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVMTVGN  124

Query  129  KSDLESAIRALDASKQSIIAAYRTHTT-LEVSEIESMMAEEKWMSGQEAYELGFATLVTN  187
              +L  +   L+ +     +AY   +  L+  ++  M+  E W++++EA  L+F+ L+ +
Sbjct  125  AEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEA--LSFG-LIDE  181

Query  188  PLQQVALAKSPVTNTFR---NVPESLARE  213
             L    +A S   + ++   NVPE L ++
Sbjct  182  ILGANEIAASISKEQYKRFENVPEDLKKD  210

66) LMM7_0097 in NC_017537


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  100 bits (364),  Expect = 6e-23, Method: Compositional matrix adjust.
 Identities = 87/209 (42%), Positives = 139/209 (67%), Gaps = 10/209 (4%)

Query  9    FNFKKDTESNTAEIDIYGDIVADGYQWYESDITSFDFKKDLDALGDVSKIYVNINSNGGF  68
            F+ K+ + S+ +EI IYGDIV+D  +W+ESD+T+ DFK+ LD LGD+S I V+INS+GG 
Sbjct  8    FQMKRKSKSK-GEIFIYGDIVSD--KWFESDVTATDFKNKLDELGDISEIDVHINSSGGS  64

Query  69   VYEGQAIYNQLVRHPAQIHVRIDgmaasiasviamagDIIEMPANAQMMIHEPAGGAFGN  128
            V+EG+AIYN L  HPA+I++ +D++AASIASVIAM+GD I M  N+ +MIH++   + GN
Sbjct  65   VFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVMTVGN  124

Query  129  KSDLESAIRALDASKQSIIAAYRTHTT-LEVSEIESMMAEEKWMSGQEAYELGFATLVTN  187
              +L  +   L+ +     +AY   +  L+  ++  M+  E W++++EA  L+F+ L+ +
Sbjct  125  AEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEA--LSFG-LIDE  181

Query  188  PLQQVALAKSPVTNTFR---NVPESLARE  213
             L    +A S   + ++   NVPE L ++
Sbjct  182  ILGANEIAASISKEQYKRFENVPEDLKKD  210

67) lmo4a_0090 in NC_017529


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  100 bits (364),  Expect = 6e-23, Method: Compositional matrix adjust.
 Identities = 87/209 (42%), Positives = 139/209 (67%), Gaps = 10/209 (4%)

Query  9    FNFKKDTESNTAEIDIYGDIVADGYQWYESDITSFDFKKDLDALGDVSKIYVNINSNGGF  68
            F+ K+ + S+ +EI IYGDIV+D  +W+ESD+T+ DFK+ LD LGD+S I V+INS+GG 
Sbjct  8    FQMKRKSKSK-GEIFIYGDIVSD--KWFESDVTATDFKNKLDELGDISEIDVHINSSGGS  64

Query  69   VYEGQAIYNQLVRHPAQIHVRIDgmaasiasviamagDIIEMPANAQMMIHEPAGGAFGN  128
            V+EG+AIYN L  HPA+I++ +D++AASIASVIAM+GD I M  N+ +MIH++   + GN
Sbjct  65   VFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVMTVGN  124

Query  129  KSDLESAIRALDASKQSIIAAYRTHTT-LEVSEIESMMAEEKWMSGQEAYELGFATLVTN  187
              +L  +   L+ +     +AY   +  L+  ++  M+  E W++++EA  L+F+ L+ +
Sbjct  125  AEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEA--LSFG-LIDE  181

Query  188  PLQQVALAKSPVTNTFR---NVPESLARE  213
             L    +A S   + ++   NVPE L ++
Sbjct  182  ILGANEIAASISKEQYKRFENVPEDLKKD  210

68) EFAU085_00786 in NC_021994


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score =  100 bits (362),  Expect = 8e-23, Method: Compositional matrix adjust.
 Identities = 80/196 (41%), Positives = 134/196 (69%), Gaps = 3/196 (1%)

Query  1    MTTMKTFLAVKNEG-AVPQIFIQG-FIGSSWFFEGNTDKGIKNILDSLGDQEEIEVVINS  58
            M+    ++ +K  + +  +IFI G +++  WF  + T  ++KN LD LGD  EI+V INS
Sbjct  1    MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS  60

Query  59   NGGDVFQGIAIGNLLKSNKAKVNVVINGLaasaasiiamaGDTIKIYNNAQLMIHRASTY  118
            +GG VF+G AI N+LK + AK+N+ +++LAAS AS+IAM+GDTI + +N+ LMIH +   
Sbjct  61   SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM  120

Query  119  GEGNVDDFRTIADQLESIDKSVKASYKTRFNGTD-EALQELLEKESFMDAETALSYGLVD  177
              GN +++R  AD LE  D   +++Y  + ++ D E L+++L+ E+ + AE ALS+GL+D
Sbjct  121  TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID  180

Query  178  EIIDAENSAGTEAKKE  193
            EI++A++ A++ +K +
Sbjct  181  EILGANEIAASISKEQ  196

69) EHR_09570 in NC_018081


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score = 99.6 bits (359),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 80/196 (41%), Positives = 134/196 (69%), Gaps = 3/196 (1%)

Query  1    MTTMKTFLAVKNEG-AVPQIFIQG-FIGSSWFFEGNTDKGIKNILDSLGDQEEIEVVINS  58
            M+    ++ +K  + +  +IFI G +++  WF  + T  ++KN LD LGD  EI+V INS
Sbjct  1    MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS  60

Query  59   NGGDVFQGIAIGNLLKSNKAKINVVINGLaasaasiiamaGDTVKIYNNAQLMIHRASTY  118
            +GG VF+G AI N+LK + AKIN+ +++LAAS AS+IAM+GDT+ + +N+ LMIH +   
Sbjct  61   SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM  120

Query  119  GEGNVDDFRTIADQLESIDKSVKASYKTRFNGTD-EVLQELLEKESFMDAETALSYGLVD  177
              GN +++R  AD LE  D   +++Y  + ++ D E L+++L+ E+ + AE ALS+GL+D
Sbjct  121  TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID  180

Query  178  EIIDAENSAGTEAKKE  193
            EI++A++ A++ +K +
Sbjct  181  EILGANEIAASISKEQ  196

70) BTG_07140 in NC_018500


> NC_007793_P4|22|G22|87161020|YP_494099.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|22163..22936|-|SAUSA300_1402|phiSLT 
ORF257-like protein prophage protease
Length=257

 Score = 91.8 bits (329),  Expect = 3e-20, Method: Compositional matrix adjust.
 Identities = 73/182 (41%), Positives = 114/182 (63%), Gaps = 7/182 (3%)

Query  29   DITIYGDI-GESWWSDSTSAVDIERTLKATSA-NVININLNSPGGDVFDGIAIYNQLKNH  86
            +I IYGDI ++ W     +A D+   L   +  + I++++NS+GG VF+G AIYN LK H
Sbjct  19   EIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINSSGGSVFEGHAIYNMLKMH  78

Query  87   PAKIIINVDGLaasaasiiamaaDELIMNTGSMLMIHEASTW--TWGTKLDIRKTLNALE  144
            PAKI I VD+LAAS AS+IAM++D ++M+  S LMIH+  +W  T G   ++RKT + LE
Sbjct  79   PAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHN--SWVMTVGNAEELRKTADLLE  136

Query  145  GIDKSLADIYMTRYQG-ERSEIETMIANETWFTANEAVEFGLAHKVNEHVENNEVIDPEE  203
              D      Y+ + ++ ++ ++  M+  ETW+TA+EA+ FGL + +    E    I  E+
Sbjct  137  KTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLIDEILGANEIAASISKEQ  196

Query  204  FK  205
            +K
Sbjct  197  YK  198