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Homologs of EF2304 gene of NC_004668_R1

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) EF2304
( NP_815960.1 )

Cro/CI family transcriptional regulator

NC_004668
(Enterococcus faecalis V583)

4e-37

100

2) CC1_29770
( YP_007770966.1 )

Helix-turn-helix.

NC_021009
(Coprococcus catus GD/7)

1e-24

3) OBV_02320
( YP_004879936.1 )

putative Xre family DNA-binding protein

NC_016048
(Oscillibacter valericigenes Sjm18-20)

3e-22

4) ES1_17420
( YP_007840199.1 )

Helix-turn-helix.

NC_021043
(Eubacterium siraeum V10Sc8a)

2e-14

5) Dhaf_0506
( YP_002457009.1 )

XRE family transcriptional regulator

NC_011830
(Desulfitobacterium hafniense DCB-2)

2e-14

6) EUS_13790
( YP_007775423.1 )

Helix-turn-helix.

NC_021011
(Eubacterium siraeum 70/3)

6e-10

• Sequence Alignments

1) EF2304 in NC_004668


> NC_004668_R1|22|G22|29376806|NP_815960.1|Enterococcus_faecalis_V583|+|17494..17769|-|EF2304|Cro/CI 
family transcriptional 
regulator
Length=91

 Score =  147 bits (542),  Expect = 4e-37, Method: Compositional matrix adjust.
 Identities = 91/91 (100%), Positives = 91/91 (100%), Gaps = 0/91 (0%)

Query  1   MLDTKGGQDTAMDTISAIKTRILRLCAERNITINKLATMSALPPSSVKNILYGKSTDPKI  60
           MLDTKGGQDTAMDTISAIKTRILRLCAERNITINKLATMSALPPSSVKNILYGKSTDPKI
Sbjct  1   MLDTKGGQDTAMDTISAIKTRILRLCAERNITINKLATMSALPPSSVKNILYGKSTDPKI  60

Query  61  STIKKICDGLDMTLIDFFDAPEFENLEPEIK  91
           STIKKICDGLDMTLIDFFDAPEFENLEPEIK
Sbjct  61  STIKKICDGLDMTLIDFFDAPEFENLEPEIK  91

2) CC1_29770 in NC_021009


> NC_004668_R1|22|G22|29376806|NP_815960.1|Enterococcus_faecalis_V583|+|17494..17769|-|EF2304|Cro/CI 
family transcriptional 
regulator
Length=91

 Score =  106 bits (386),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 57/80 (72%), Positives = 73/80 (92%), Gaps = 0/80 (0%)

Query  1   MDTYTATKNRILELCGQHNITINKLATLAALPPSSIKNILYGKSTNPKLLTIKMICDGLN  60
           MDT +A K RIL LC+++NITINKLAT++ALPPSS+KNILYGKST+PK+ TIK ICDGL+
Sbjct  12  MDTISAIKTRILRLCAERNITINKLATMSALPPSSVKNILYGKSTDPKISTIKKICDGLD  71

Query  61  ITLKDFFDTPEFNHLDSEIK  80
           +TL DFFD+PEF++L++EIK
Sbjct  72  MTLIDFFDAPEFENLEPEIK  91

3) OBV_02320 in NC_016048


> NC_004668_R1|22|G22|29376806|NP_815960.1|Enterococcus_faecalis_V583|+|17494..17769|-|EF2304|Cro/CI 
family transcriptional 
regulator
Length=91

 Score = 98.6 bits (355),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 51/80 (64%), Positives = 68/80 (85%), Gaps = 0/80 (0%)

Query  1   MDMIDAVKMRLMKLCNERNISINKLATLSAVAPSSIKNIFYGKSVNPKLQTIKMLCDGLD  60
           MD I A+K R+++LC ERNI+INKLAT+SA++PSS+KNI+YGKS +PK+ TIK +CDGLD
Sbjct  12  MDTISAIKTRILRLCAERNITINKLATMSALPPSSVKNILYGKSTDPKISTIKKICDGLD  71

Query  61  ITLAEFFDCEEFNELEQTIK  80
           +TL +FFD  EF++LE  IK
Sbjct  72  MTLIDFFDAPEFENLEPEIK  91

4) ES1_17420 in NC_021043


> NC_004668_R1|22|G22|29376806|NP_815960.1|Enterococcus_faecalis_V583|+|17494..17769|-|EF2304|Cro/CI 
family transcriptional 
regulator
Length=91

 Score = 72.3 bits (255),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 39/74 (53%), Positives = 57/74 (78%), Gaps = 0/74 (0%)

Query  12  AVSKRILQLCRDKNITVNKLATLSAVTQSTVNDIINMKSKNIGIVTLKKLCDGLQISITD  71
           A+  RIL+LC ++NIT+NKLAT+SA+  S+V++I+  KS +  I T+KK+CDGL++++ D
Sbjct  17  AIKTRILRLCAERNITINKLATMSALPPSSVKNILYGKSTDPKISTIKKICDGLDMTLID  76

Query  72  FFDDDMFRNLEQEI  85
           FFD   F NLE EI
Sbjct  77  FFDAPEFENLEPEI  90

5) Dhaf_0506 in NC_011830


> NC_004668_R1|22|G22|29376806|NP_815960.1|Enterococcus_faecalis_V583|+|17494..17769|-|EF2304|Cro/CI 
family transcriptional 
regulator
Length=91

 Score = 72.3 bits (255),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 37/80 (47%), Positives = 60/80 (75%), Gaps = 0/80 (0%)

Query  1   MNISQAVIRRIEELCRERHLSINALSNISGITQSTVNDIMSGKTYNAGIGTIKKLCDGLG  60
           M+   A+  RI  LC ER+++IN L+ +S++  S+V++I+ GK+ ++ I+TIKK+CDGL+
Sbjct  12  MDTISAIKTRILRLCAERNITINKLATMSALPPSSVKNILYGKSTDPKISTIKKICDGLD  71

Query  61  LSVRDFFDSELFSNLEQEIK  80
           +++ DFFD+  F NLE EIK
Sbjct  72  MTLIDFFDAPEFENLEPEIK  91

6) EUS_13790 in NC_021011


> NC_004668_R1|22|G22|29376806|NP_815960.1|Enterococcus_faecalis_V583|+|17494..17769|-|EF2304|Cro/CI 
family transcriptional 
regulator
Length=91

 Score = 57.6 bits (199),  Expect = 6e-10, Method: Compositional matrix adjust.
 Identities = 40/74 (55%), Positives = 57/74 (78%), Gaps = 0/74 (0%)

Query  12  AVSRRILQLCRDKNITVNKLATLSAVTQSTVNDIINMKSKNIGIVTLKKLCDGLQititd  71
           A+  RIL+LC ++NIT+NKLAT+SA+  S+V++I+  KS +  I T+KK+CDGL++T+ D
Sbjct  17  AIKTRILRLCAERNITINKLATMSALPPSSVKNILYGKSTDPKISTIKKICDGLDMTLID  76

Query  72  ffdddMFRNLEQEI  85
           FFD   F NLE EI
Sbjct  77  FFDAPEFENLEPEI  90