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Homologs of SE0044 gene of NC_004461_R1

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) BN843_270
( YP_007867106.1 )

Type I restriction-modification system,specificity subunit S

NC_021059
(Staphylococcus aureus M1)

8e-176

100

2) SE0044
( NP_763599.1 )

specificity determinant HsdS

NC_004461
(Staphylococcus epidermidis ATCC 12228)

8e-176

100

3) hsdS_1
( YP_005738550.1 )

type I restriction modification system, site specificity determination subunit, HsdS_1

NC_017338
(Staphylococcus aureus JKD6159)

1e-66

• Sequence Alignments

1) BN843_270 in NC_021059


> NC_004461_R1|22|G22|27466962|NP_763599.1|Staphylococcus_epidermidis_ATCC_12228|+|19732..20934|-|SE0044|specificity 
determinant 
HsdS
Length=400

 Score =  609 bits (2302),  Expect = 8e-176, Method: Compositional matrix adjust.
 Identities = 400/400 (100%), Positives = 400/400 (100%), Gaps = 0/400 (0%)

Query  1    MNKQTNTPELRFPEFDEEWKKRKLGEVVNYKNGGSFESLVKNHGVYKLITLKSVNTEGKL  60
            MNKQTNTPELRFPEFDEEWKKRKLGEVVNYKNGGSFESLVKNHGVYKLITLKSVNTEGKL
Sbjct  1    MNKQTNTPELRFPEFDEEWKKRKLGEVVNYKNGGSFESLVKNHGVYKLITLKSVNTEGKL  60

Query  61   CNSGKYIDDKCVETLCNDTLVMILSEQAPGLVGMTAIIPNNNEYVLNQRVAALVPKQFID  120
            CNSGKYIDDKCVETLCNDTLVMILSEQAPGLVGMTAIIPNNNEYVLNQRVAALVPKQFID
Sbjct  61   CNSGKYIDDKCVETLCNDTLVMILSEQAPGLVGMTAIIPNNNEYVLNQRVAALVPKQFID  120

Query  121  SQFLSKLINRNQKYFSVRSAGTKVKNISKGHVENFNFLSPNYTEQQKIGNFFSKLDRQIe  180
            SQFLSKLINRNQKYFSVRSAGTKVKNISKGHVENFNFLSPNYTEQQKIGNFFSKLDRQIE
Sbjct  121  SQFLSKLINRNQKYFSVRSAGTKVKNISKGHVENFNFLSPNYTEQQKIGNFFSKLDRQIE  180

Query  181  leeeklelleqqkRGYIQKIFSQDLRFKDENGNSYPDWSIKKIEDISKVNKGFTPNTKND  240
            LEEEKLELLEQQKRGYIQKIFSQDLRFKDENGNSYPDWSIKKIEDISKVNKGFTPNTKND
Sbjct  181  LEEEKLELLEQQKRGYIQKIFSQDLRFKDENGNSYPDWSIKKIEDISKVNKGFTPNTKND  240

Query  241  KYWDELNENWLSIAGMTQKYLYKGNKGITEKGASKHVKVDKDTLIMSFKLTLGKLAIVKE  300
            KYWDELNENWLSIAGMTQKYLYKGNKGITEKGASKHVKVDKDTLIMSFKLTLGKLAIVKE
Sbjct  241  KYWDELNENWLSIAGMTQKYLYKGNKGITEKGASKHVKVDKDTLIMSFKLTLGKLAIVKE  300

Query  301  PIYTNEAICHFVWKESNVNTEYMYYYLNSINISTFGAQAVKGVTLNNDAINSIIVKLPVI  360
            PIYTNEAICHFVWKESNVNTEYMYYYLNSINISTFGAQAVKGVTLNNDAINSIIVKLPVI
Sbjct  301  PIYTNEAICHFVWKESNVNTEYMYYYLNSINISTFGAQAVKGVTLNNDAINSIIVKLPVI  360

Query  361  QEQNKIAYFFNKLDKLIEKQSSKVELLKQRKQGFLQKMFV  400
            QEQNKIAYFFNKLDKLIEKQSSKVELLKQRKQGFLQKMFV
Sbjct  361  QEQNKIAYFFNKLDKLIEKQSSKVELLKQRKQGFLQKMFV  400

2) SE0044 in NC_004461


> NC_004461_R1|22|G22|27466962|NP_763599.1|Staphylococcus_epidermidis_ATCC_12228|+|19732..20934|-|SE0044|specificity 
determinant 
HsdS
Length=400

 Score =  609 bits (2302),  Expect = 8e-176, Method: Compositional matrix adjust.
 Identities = 400/400 (100%), Positives = 400/400 (100%), Gaps = 0/400 (0%)

Query  1    MNKQTNTPELRFPEFDEEWKKRKLGEVVNYKNGGSFESLVKNHGVYKLITLKSVNTEGKL  60
            MNKQTNTPELRFPEFDEEWKKRKLGEVVNYKNGGSFESLVKNHGVYKLITLKSVNTEGKL
Sbjct  1    MNKQTNTPELRFPEFDEEWKKRKLGEVVNYKNGGSFESLVKNHGVYKLITLKSVNTEGKL  60

Query  61   CNSGKYIDDKCVETLCNDTLVMILSEQAPGLVGMTAIIPNNNEYVLNQRVAALVPKQFID  120
            CNSGKYIDDKCVETLCNDTLVMILSEQAPGLVGMTAIIPNNNEYVLNQRVAALVPKQFID
Sbjct  61   CNSGKYIDDKCVETLCNDTLVMILSEQAPGLVGMTAIIPNNNEYVLNQRVAALVPKQFID  120

Query  121  SQFLSKLINRNQKYFSVRSAGTKVKNISKGHVENFNFLSPNYTEQQKIGNFFSKLDRQIe  180
            SQFLSKLINRNQKYFSVRSAGTKVKNISKGHVENFNFLSPNYTEQQKIGNFFSKLDRQIE
Sbjct  121  SQFLSKLINRNQKYFSVRSAGTKVKNISKGHVENFNFLSPNYTEQQKIGNFFSKLDRQIE  180

Query  181  leeeklelleqqkRGYIQKIFSQDLRFKDENGNSYPDWSIKKIEDISKVNKGFTPNTKND  240
            LEEEKLELLEQQKRGYIQKIFSQDLRFKDENGNSYPDWSIKKIEDISKVNKGFTPNTKND
Sbjct  181  LEEEKLELLEQQKRGYIQKIFSQDLRFKDENGNSYPDWSIKKIEDISKVNKGFTPNTKND  240

Query  241  KYWDELNENWLSIAGMTQKYLYKGNKGITEKGASKHVKVDKDTLIMSFKLTLGKLAIVKE  300
            KYWDELNENWLSIAGMTQKYLYKGNKGITEKGASKHVKVDKDTLIMSFKLTLGKLAIVKE
Sbjct  241  KYWDELNENWLSIAGMTQKYLYKGNKGITEKGASKHVKVDKDTLIMSFKLTLGKLAIVKE  300

Query  301  PIYTNEAICHFVWKESNVNTEYMYYYLNSINISTFGAQAVKGVTLNNDAINSIIVKLPVI  360
            PIYTNEAICHFVWKESNVNTEYMYYYLNSINISTFGAQAVKGVTLNNDAINSIIVKLPVI
Sbjct  301  PIYTNEAICHFVWKESNVNTEYMYYYLNSINISTFGAQAVKGVTLNNDAINSIIVKLPVI  360

Query  361  QEQNKIAYFFNKLDKLIEKQSSKVELLKQRKQGFLQKMFV  400
            QEQNKIAYFFNKLDKLIEKQSSKVELLKQRKQGFLQKMFV
Sbjct  361  QEQNKIAYFFNKLDKLIEKQSSKVELLKQRKQGFLQKMFV  400

3) hsdS_1 in NC_017338


> NC_004461_R1|22|G22|27466962|NP_763599.1|Staphylococcus_epidermidis_ATCC_12228|+|19732..20934|-|SE0044|specificity 
determinant 
HsdS
Length=400

 Score =  247 bits (921),  Expect = 1e-66, Method: Compositional matrix adjust.
 Identities = 201/391 (52%), Positives = 281/391 (72%), Gaps = 25/391 (6%)

Query  8    NVPELRFPGFEGEWEEKKLEDLGLFQKSYSFSRAKEGNGKTKHIHYGDIHSKFKTVLDSD  67
            N PELRFP F+ EW  +KL ++  ++++ SF      +G  K I        +K+V +++
Sbjct  6    NTPELRFPEFDEEWKKRKLGEVVNYKNGGSFESLVKNHGVYKLI-------TLKSV-NTE  57

Query  68   GNIPNI---IEKAVFELIQKGDIVFADASEDYSDLGKAVMI----DFEPNSLISGLHTHL  120
            G++ N    I+    E + ++ +V   + +  + +G + +I    ++  N  +++L    
Sbjct  58   GKLCNSGKYIDDKCVETLCNDTLVMILSEQAPGLVGMTAIIPNNNEYVLNQRVAALVPKQ  117

Query  121  FRPLNNAISNFLIFYTKTLS-YKKFIRQQGTGISVLGISKKSLLNLNVLIPRSELEQQKI  179
            F       S+FL   +K ++  +K++  +++G  V  ISK  + N+N L P    EQQKI
Sbjct  118  FID-----SQFL---SKLINRNQKYFSVRSAGTKVKNISKGHVENFNFLSPNYT-EQQKI  168

Query  180  GQFFSKLDRQIeleeqklellqqqkkGYMQKIFSQELRFKDENGNDYPEWENKRIEDIAN  239
            G+FFSKLDRQIELEE+KLELL+QQK+GY+QKIFSQ+LRFKDENGN YP+W  K+IEDI++
Sbjct  169  GNFFSKLDRQIELEEEKLELLEQQKRGYIQKIFSQDLRFKDENGNSYPDWSIKKIEDISK  228

Query  240  VNKGFTPSTnnneywdnndknwLSIAGMNQKYLYKGNKGISKDAAKNYMKVKNDTLIMSF  299
            VNKGFTP+T+N+ YWD+ + NWLSIAGM QKYLYKGNKGI+  +A + +KV +DTLIMSF
Sbjct  229  VNKGFTPNTKNDKYWDELNENWLSIAGMTQKYLYKGNKGITEKGASKHVKVDKDTLIMSF  288

Query  300  KLTIGKLAIVKAPLYTNEAICHFIWKVNKINTEFIYYYLNSLNISTFGVQAVKGVTLNND  359
            KLT+GKLAIVK P+YTNEAICHF+WK +++NTE++YYYLNS+NISTFG QAVKGVTLNND
Sbjct  289  KLTLGKLAIVKEPIYTNEAICHFVWKESNVNTEYMYYYLNSINISTFGAQAVKGVTLNND  348

Query  360  SINSIIVKLPNEEEQNIIAKFLLEVDKTVNN  390
            +INSIIVKLP  +EQN IA F+  +DK +++
Sbjct  349  AINSIIVKLPVIQEQNKIAYFFNKLDKLIEK  379