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Homologs of SF2985 gene of NC_004337_P1

DNA-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) SFxv_4138
( - )

NC_017328
(Shigella flexneri 2002017)

0.0

99.9

2) SFxv_3829
( - )

NC_017328
(Shigella flexneri 2002017)

0.0

99.9

3) SFxv_0224
( - )

NC_017328
(Shigella flexneri 2002017)

0.0

99.9

4) SFxv_2954
( - )

NC_017328
(Shigella flexneri 2002017)

0.0

99.9

5) SF3184
( - )

NC_004337
(Shigella flexneri 301)

0.0

99.7

6) SFxv_3495
( - )

NC_017328
(Shigella flexneri 2002017)

0.0

99.6

7) EC042_4758
( - )

NC_017626
(Escherichia coli 042)

0.0

95.8

8) insD-3
( - )

NC_012892
(Escherichia coli BL21(DE3))

0.0

99.7

9) ECBD_1653
( - )

NC_012947
(Escherichia coli Escherichia coli BL21-Gold(DE3)pLysS AG)

0.0

99.7

10) insD1
( - )

NC_000913
(Escherichia coli K12)

0.0

99.7

11) insD-7
( - )

NC_010473
(Escherichia coli K-12)

0.0

99.7

12) unnamed
( - )

NC_007384
(Shigella sonnei Ss046)

0.0

95.8

13) unnamed
( - )

NC_017640
(Escherichia coli UMNK88)

e-205

86.5

• Sequence Alignments

1) SFxv_4138 in NC_017328


>NC_004337_P1|22|G18|24114249|NP_708759.1|Shigella_flexneri_2a_str._301|+|27593..28381|-|SF2985|insertion 
          Length = 789

 Score = 1538 bits (3969), Expect = 0.0
 Identities = 788/790 (100%)
 Strand = Plus / Plus

Query: 98  atggcccgccgcagtcgtcacactgatgatacggatgtgcttctccgtatacaccatgtt 157
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atggccccccgcagtcgtcacactgatgatacggatgtgcttctccgtatacaccatgtt 60

Query: 158 atcggagagctgcccacgtatggttatcgtcgggtatgggcgctgcttcgcagacaggca 217
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  atcggagagctgcccacgtatggttatcgtcgggtatgggcgctgcttcgcagacaggca 120

Query: 218 ggaacttgatggtatgcctgcgatcaatgccaaacgtgtttaccggctcatgcgccagaa 277
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 g-aacttgatggtatgcctgcgatcaatgccaaacgtgtttaccggctcatgcgccagaa 179

Query: 278 tgcgctgttgcttgagcgaaaacctgctgtaccgccatcgaaacgggcacatacaggcag 337
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 tgcgctgttgcttgagcgaaaacctgctgtaccgccatcgaaacgggcacatacaggcag 239

Query: 338 agtggccgtgaaagaaagcaatcagcgatggtgctctgacgggttcgagttctgctgtga 397
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 agtggccgtgaaagaaagcaatcagcgatggtgctctgacgggttcgagttctgctgtga 299

Query: 398 taacggagagagactgcgtgtcacgttcgcgctggactgctgtgatcgtgaggcactgca 457
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 taacggagagagactgcgtgtcacgttcgcgctggactgctgtgatcgtgaggcactgca 359

Query: 458 ctgggcggtgactaccggcggcttcaacagtgaaacagtacaggacgtcatgctgggagc 517
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ctgggcggtgactaccggcggcttcaacagtgaaacagtacaggacgtcatgctgggagc 419

Query: 518 ggtggaacgccgcttcggcaacgatcttccgtcgtctccagtggagtggctgacggataa 577
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ggtggaacgccgcttcggcaacgatcttccgtcgtctccagtggagtggctgacggataa 479

Query: 578 tggttcatgctaccgggctaatgaaacacgccagttcgcccggatgttgggacttgaacc 637
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tggttcatgctaccgggctaatgaaacacgccagttcgcccggatgttgggacttgaacc 539

Query: 638 gaagaacacggcggtgcggagtccggagagtaacggaatagcagagagcttcgtgaaaac 697
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 gaagaacacggcggtgcggagtccggagagtaacggaatagcagagagcttcgtgaaaac 599

Query: 698 gataaagcgtgactacatcagtatcatgcccaaaccagacgggttaacggcagcaaagaa 757
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gataaagcgtgactacatcagtatcatgcccaaaccagacgggttaacggcagcaaagaa 659

Query: 758 ccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcg 817
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 ccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcg 719

Query: 818 ctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtct 877
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 ctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtct 779

Query: 878 ggaaatatag 887
           ||||||||||
Sbjct: 780 ggaaatatag 789

2) SFxv_0224 in NC_017328


>NC_004337_P1|22|G18|24114249|NP_708759.1|Shigella_flexneri_2a_str._301|+|27593..28381|-|SF2985|insertion 
          Length = 789

 Score = 1522 bits (3928), Expect = 0.0
 Identities = 780/782 (100%)
 Strand = Plus / Plus

Query: 126 ccgcagtcgtcacactgatgatacggatgtgcttctccgtatacaccatgttatcggaga 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   ccgcagtcgtcacactgatgatacggatgtgcttctccgtatacaccatgttatcggaga 68

Query: 186 gctgcccacgtatggttatcgtcgggtatgggcgctgcttcgcagacaggcagaacttga 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  gctgcccacgtatggttatcgtcgggtatgggcgctgcttcgcagacaggcagaacttga 128

Query: 246 tggtatgcctgcgatcaatgccaaacgtgtttaccggctcatgcgccagaatggcgctgt 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 129 tggtatgcctgcgatcaatgccaaacgtgtttaccggctcatgcgccagaatg-cgctgt 187

Query: 306 tgcttgagcgaaaacctgctgtaccgccatcgaaacgggcacatacaggcagagtggccg 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 tgcttgagcgaaaacctgctgtaccgccatcgaaacgggcacatacaggcagagtggccg 247

Query: 366 tgaaagaaagcaatcagcgatggtgctctgacgggttcgagttctgctgtgataacggag 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tgaaagaaagcaatcagcgatggtgctctgacgggttcgagttctgctgtgataacggag 307

Query: 426 agagactgcgtgtcacgttcgcgctggactgctgtgatcgtgaggcactgcactgggcgg 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 agagactgcgtgtcacgttcgcgctggactgctgtgatcgtgaggcactgcactgggcgg 367

Query: 486 ggactaccggcggcttcaacagtgaaacagtacaggacgtcatgctgggagcggtggaac 545
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tgactaccggcggcttcaacagtgaaacagtacaggacgtcatgctgggagcggtggaac 427

Query: 546 gccgcttcggcaacgatcttccgtcgtctccagtggagtggctgacggataatggttcat 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gccgcttcggcaacgatcttccgtcgtctccagtggagtggctgacggataatggttcat 487

Query: 606 gctaccgggctaatgaaacacgccagttcgcccggatgttgggacttgaaccgaagaaca 665
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 gctaccgggctaatgaaacacgccagttcgcccggatgttgggacttgaaccgaagaaca 547

Query: 666 cggcggtgcggagtccggagagtaacggaatagcagagagcttcgtgaaaacgataaagc 725
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cggcggtgcggagtccggagagtaacggaatagcagagagcttcgtgaaaacgataaagc 607

Query: 726 gtgactacatcagtatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcag 785
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gtgactacatcagtatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcag 667

Query: 786 aggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccac 845
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 aggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccac 727

Query: 846 gggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatat 905
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 gggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatat 787

Query: 906 ag 907
           ||
Sbjct: 788 ag 789


 Score = 12 bits (31), Expect = 8e+05
 Identities = 6/6 (100%)
 Strand = Plus / Plus

Query: 119 atggcc 124
           ||||||
Sbjct: 1   atggcc 6

3) SFxv_2954 in NC_017328


>NC_004337_P1|22|G18|24114249|NP_708759.1|Shigella_flexneri_2a_str._301|+|27593..28381|-|SF2985|insertion 
          Length = 789

 Score = 1522 bits (3928), Expect = 0.0
 Identities = 780/782 (100%)
 Strand = Plus / Plus

Query: 105 ccgcagtcgtcacactgatgatacggatgtgcttctccgtatacaccatgttatcggaga 164
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   ccgcagtcgtcacactgatgatacggatgtgcttctccgtatacaccatgttatcggaga 68

Query: 165 gctgcccacgtatggttatcgtcgggtatgggcgctgcttcgcagacaggcagaacttga 224
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  gctgcccacgtatggttatcgtcgggtatgggcgctgcttcgcagacaggcagaacttga 128

Query: 225 tggtatgcctgcgatcaatgccaaacgtgtttaccggctcatgcgccagaatgcgctgtt 284
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 tggtatgcctgcgatcaatgccaaacgtgtttaccggctcatgcgccagaatgcgctgtt 188

Query: 285 gcttgagcgaaaaccttgctgtaccgccatcgaaacgggcacatacaggcagagtggccg 344
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 gcttgagcgaaaacct-gctgtaccgccatcgaaacgggcacatacaggcagagtggccg 247

Query: 345 tgaaagaaagcaatcagcgatggtgctctgacgggttcgagttctgctgtgataacggag 404
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tgaaagaaagcaatcagcgatggtgctctgacgggttcgagttctgctgtgataacggag 307

Query: 405 agagactgcgtgtcacgttcgcgctggactgctgtgatcgtgaggcactgcactgggcgg 464
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 agagactgcgtgtcacgttcgcgctggactgctgtgatcgtgaggcactgcactgggcgg 367

Query: 465 tgactaccggcggcttcaacagtgaaacagtacaggacgtcatgctgggagcggtggaac 524
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tgactaccggcggcttcaacagtgaaacagtacaggacgtcatgctgggagcggtggaac 427

Query: 525 gccgcttcggcaacgatcttccgtcgtctccagtggagtggctgacggataatggttcat 584
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gccgcttcggcaacgatcttccgtcgtctccagtggagtggctgacggataatggttcat 487

Query: 585 gctaccgggctaatgaaacacgccagttcgcccggatgttgggacttgaaccgaagaaca 644
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 gctaccgggctaatgaaacacgccagttcgcccggatgttgggacttgaaccgaagaaca 547

Query: 645 cggcggtgcgtagtccggagagtaacggaatagcagagagcttcgtgaaaacgataaagc 704
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cggcggtgcggagtccggagagtaacggaatagcagagagcttcgtgaaaacgataaagc 607

Query: 705 gtgactacatcagtatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcag 764
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gtgactacatcagtatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcag 667

Query: 765 aggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccac 824
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 aggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccac 727

Query: 825 gggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatat 884
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 gggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatat 787

Query: 885 ag 886
           ||
Sbjct: 788 ag 789


 Score = 12 bits (31), Expect = 8e+05
 Identities = 6/6 (100%)
 Strand = Plus / Plus

Query: 98  atggcc 103
           ||||||
Sbjct: 1   atggcc 6

4) SFxv_3829 in NC_017328


>NC_004337_P1|22|G18|24114249|NP_708759.1|Shigella_flexneri_2a_str._301|+|27593..28381|-|SF2985|insertion 
          Length = 789

 Score = 1522 bits (3928), Expect = 0.0
 Identities = 780/782 (100%)
 Strand = Plus / Plus

Query: 105 ccgcagtcgtcacactgatgatacggatgtgcttctccgtatacaccatgttatcggaga 164
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   ccgcagtcgtcacactgatgatacggatgtgcttctccgtatacaccatgttatcggaga 68

Query: 165 gctgcccacgtatggttatcgtcgggtatgggcgctgcttcgcagacaggcagaacttga 224
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  gctgcccacgtatggttatcgtcgggtatgggcgctgcttcgcagacaggcagaacttga 128

Query: 225 tggtatgcctgcgatcaatgccaaacgtgtttaccggctcatgcgccagaatggcgctgt 284
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 129 tggtatgcctgcgatcaatgccaaacgtgtttaccggctcatgcgccagaatg-cgctgt 187

Query: 285 tgcttgagcgaaaacctgctgtaccgccatcgaaacgggcacatacaggcagagtggccg 344
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 tgcttgagcgaaaacctgctgtaccgccatcgaaacgggcacatacaggcagagtggccg 247

Query: 345 tgaaagaaagcaatcagcgatggtgctctgacgggttcgagttctgctgtgataacggag 404
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tgaaagaaagcaatcagcgatggtgctctgacgggttcgagttctgctgtgataacggag 307

Query: 405 agagactgcgtgtcacgttcgcgctggactgctgtgatcgtgaggcactgcactgggcgg 464
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 agagactgcgtgtcacgttcgcgctggactgctgtgatcgtgaggcactgcactgggcgg 367

Query: 465 tgactaccggcggcttcaacagtgaaacagtacaggacgtcatgctgggagcggtggaac 524
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tgactaccggcggcttcaacagtgaaacagtacaggacgtcatgctgggagcggtggaac 427

Query: 525 gccgcttcggcaacgatcttccgtcgtctccagtggagtggctgacggataatggttcat 584
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gccgcttcggcaacgatcttccgtcgtctccagtggagtggctgacggataatggttcat 487

Query: 585 gctaccgggctaatgaaacacgccagttcgcccggatgttgggacttgaaccgaagaaca 644
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 gctaccgggctaatgaaacacgccagttcgcccggatgttgggacttgaaccgaagaaca 547

Query: 645 cggcggtgcggagtccggagagtaacggaatagcagagagcttcgtgaaaacgataaagc 704
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cggcggtgcggagtccggagagtaacggaatagcagagagcttcgtgaaaacgataaagc 607

Query: 705 gtgactacatcagtatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcag 764
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gtgactacatcagtatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcag 667

Query: 765 aggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccac 824
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 aggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccac 727

Query: 825 gggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaactat 884
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 728 gggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatat 787

Query: 885 ag 886
           ||
Sbjct: 788 ag 789


 Score = 12 bits (31), Expect = 8e+05
 Identities = 6/6 (100%)
 Strand = Plus / Plus

Query: 98  atggcc 103
           ||||||
Sbjct: 1   atggcc 6

5) SF3184 in NC_004337


>NC_004337_P1|22|G18|24114249|NP_708759.1|Shigella_flexneri_2a_str._301|+|27593..28381|-|SF2985|insertion 
          Length = 789

 Score = 1509 bits (3893), Expect = 0.0
 Identities = 778/782 (99%)
 Strand = Plus / Plus

Query: 60  ccgcagtcgtcacactgatgatacggatgtgcttctccgtatacaccatgttatcggaga 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   ccgcagtcgtcacactgatgatacggatgtgcttctccgtatacaccatgttatcggaga 68

Query: 120 gctgcccacgtatggttatcgtcgggtatgggcgctgcttcgcagacaggcagaacttga 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  gctgcccacgtatggttatcgtcgggtatgggcgctgcttcgcagacaggcagaacttga 128

Query: 180 tggtatgcctgcgatcaatgccaaacgtgtttaccggctcatgcgccagaatgcgctgtt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 tggtatgcctgcgatcaatgccaaacgtgtttaccggctcatgcgccagaatgcgctgtt 188

Query: 240 gcttgagcgaaaacctgctgtaccgccatcgaaacgggcacatacaggcagagtggccgt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 gcttgagcgaaaacctgctgtaccgccatcgaaacgggcacatacaggcagagtggccgt 248

Query: 300 gaaagaaagcaatcagcgatggtgctctgacgggttcgagttctgctgtcgataacggag 359
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 249 gaaagaaagcaatcagcgatggtgctctgacgggttcgagttctgctgt-gataacggag 307

Query: 360 agagactg-gtgtcacgttcgcgctggactgctgtgatcgtgaggcactgcactgggcgg 418
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 agagactgcgtgtcacgttcgcgctggactgctgtgatcgtgaggcactgcactgggcgg 367

Query: 419 tgactaccggcggcttcaacagtgaaacagtacaggacgtcatgctgggagcggtggaac 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tgactaccggcggcttcaacagtgaaacagtacaggacgtcatgctgggagcggtggaac 427

Query: 479 gccgcttcggcaacgatcttccgtcgtctccagtggagtggctgacggataatggttcat 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gccgcttcggcaacgatcttccgtcgtctccagtggagtggctgacggataatggttcat 487

Query: 539 gctaccgggctaatgaaacacgccagttcgcccggatgttgggacttgaaccgaagaaca 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 gctaccgggctaatgaaacacgccagttcgcccggatgttgggacttgaaccgaagaaca 547

Query: 599 cggcggtgcgtagtccggagagtaacggaatagcagagagcttcgtgaaaacgataaagc 658
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cggcggtgcggagtccggagagtaacggaatagcagagagcttcgtgaaaacgataaagc 607

Query: 659 gtgactacatcagtatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcag 718
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gtgactacatcagtatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcag 667

Query: 719 aggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccac 778
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 aggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccac 727

Query: 779 gggaatatctgcggcagcgggcttgtaataggttaagtgataacagatgtctggaaatat 838
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 728 gggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatat 787

Query: 839 ag 840
           ||
Sbjct: 788 ag 789


 Score = 12 bits (31), Expect = 8e+05
 Identities = 6/6 (100%)
 Strand = Plus / Plus

Query: 53 atggcc 58
          ||||||
Sbjct: 1  atggcc 6

6) SFxv_3495 in NC_017328


>NC_004337_P1|22|G18|24114249|NP_708759.1|Shigella_flexneri_2a_str._301|+|27593..28381|-|SF2985|insertion 
          Length = 789

 Score = 1506 bits (3887), Expect = 0.0
 Identities = 773/778 (99%)
 Strand = Plus / Plus

Query: 126 ccgcagtcgtcacactgatgatacggatgtgcttctccgtatacaccatgttatcggaga 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   ccgcagtcgtcacactgatgatacggatgtgcttctccgtatacaccatgttatcggaga 68

Query: 186 gctgcccacgtatggttatcgtcgggtatgggcgctgcttcgcagacaggcagaacttga 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  gctgcccacgtatggttatcgtcgggtatgggcgctgcttcgcagacaggcagaacttga 128

Query: 246 tggtatgcctgcgatcaatgccaaacgtgtttaccggctcatgcgccagaatgcgctgtt 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 tggtatgcctgcgatcaatgccaaacgtgtttaccggctcatgcgccagaatgcgctgtt 188

Query: 306 gcttgagcgaaaacctgctgtaccgccatcgaaacgggcacatacaggcagagtggccgt 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 gcttgagcgaaaacctgctgtaccgccatcgaaacgggcacatacaggcagagtggccgt 248

Query: 366 gaaagaaagcaatcagcgatggtgctctgacgggttcgagttctgctgtgataacggaga 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gaaagaaagcaatcagcgatggtgctctgacgggttcgagttctgctgtgataacggaga 308

Query: 426 ga--ctgcgtgtcacgttcgcgctggactgctgtgatcgtgaggcactgcactgggcggt 483
           ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gagactgcgtgtcacgttcgcgctggactgctgtgatcgtgaggcactgcactgggcggt 368

Query: 484 gactaccggcggcttcaacagtgaaacagtacaggacgtcatgctgggagcggtggaacg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gactaccggcggcttcaacagtgaaacagtacaggacgtcatgctgggagcggtggaacg 428

Query: 544 ccgcttcggcaacgatcttccgtcgtctccagtggagtggctgacggataatggttcatg 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ccgcttcggcaacgatcttccgtcgtctccagtggagtggctgacggataatggttcatg 488

Query: 604 ctaccgggctaatgaaacacgccagttcgctcggatgttgggacttgaaccgaagaacac 663
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 489 ctaccgggctaatgaaacacgccagttcgcccggatgttgggacttgaaccgaagaacac 548

Query: 664 ggcggtgcgtagtccggagagtaacggaatagcagagagcttcgtgaaaacgataaagcg 723
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ggcggtgcggagtccggagagtaacggaatagcagagagcttcgtgaaaacgataaagcg 608

Query: 724 tgactacatcagtatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcaga 783
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tgactacatcagtatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcaga 668

Query: 784 ggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacg 843
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 ggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacg 728

Query: 844 ggaatatctgcggcagcgggcttgtaataggttaagtgataacagatgtctggaaata 901
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 729 ggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaata 786


 Score = 12 bits (31), Expect = 8e+05
 Identities = 6/6 (100%)
 Strand = Plus / Plus

Query: 119 atggcc 124
           ||||||
Sbjct: 1   atggcc 6

7) EC042_4758 in NC_017626


>NC_004337_P1|22|G18|24114249|NP_708759.1|Shigella_flexneri_2a_str._301|+|27593..28381|-|SF2985|insertion 
          Length = 789

 Score = 1419 bits (3661), Expect = 0.0
 Identities = 746/779 (96%)
 Strand = Plus / Plus

Query: 60  ccgcagccgtcactcagatgatacggatgtgcttctccgtatacaccatgttatcggaga 119
           |||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   ccgcagtcgtcacactgatgatacggatgtgcttctccgtatacaccatgttatcggaga 68

Query: 120 gctgcccacgtatggttatcgtcgggtatgggcgctgcttcgcagacaggccgaacttga 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 69  gctgcccacgtatggttatcgtcgggtatgggcgctgcttcgcagacaggcagaacttga 128

Query: 180 tggtatgcctgcgatcaatgccaaacgtgtttaccggatcatgcgacagaatgcgctgtt 239
           ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 129 tggtatgcctgcgatcaatgccaaacgtgtttaccggctcatgcgccagaatgcgctgtt 188

Query: 240 gcttgagcgaaaaaccgctgtaccgccatcgaaacgggcacatactggcaaagtggccgt 299
           ||||||||||||| | ||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 189 gcttgagcgaaaacctgctgtaccgccatcgaaacgggcacatacaggcagagtggccgt 248

Query: 300 gaaagaaagcaatcaacgatggtgctctgacgggttcgagttccgctgtgataacggaga 359
           ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 249 gaaagaaagcaatcagcgatggtgctctgacgggttcgagttctgctgtgataacggaga 308

Query: 360 aaaactgcgagtcacgttcgcgctggactgctgtgaccgtgaggcactgcactgggcagt 419
            | |||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 309 gagactgcgtgtcacgttcgcgctggactgctgtgatcgtgaggcactgcactgggcggt 368

Query: 420 cactacgggcggcttcgacagtgaaacagtacaggacgtcatgctgggagcggtggaacg 479
            ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gactaccggcggcttcaacagtgaaacagtacaggacgtcatgctgggagcggtggaacg 428

Query: 480 ccgcttcggcaacgagcttccggcgtctccagtagagtggctgacggataatggttcatg 539
           ||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 429 ccgcttcggcaacgatcttccgtcgtctccagtggagtggctgacggataatggttcatg 488

Query: 540 ctaccgggctaatgaaacacggcagtttgcccggatgttggggcttgaaccgaagaacac 599
           ||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||
Sbjct: 489 ctaccgggctaatgaaacacgccagttcgcccggatgttgggacttgaaccgaagaacac 548

Query: 600 ggcggtgcggagtccggagagtaacggcatagcagagagcttcgtgaaaacgataaagcg 659
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 549 ggcggtgcggagtccggagagtaacggaatagcagagagcttcgtgaaaacgataaagcg 608

Query: 660 tgactacatcagtatcatgcctaaaccagacgggttaacggcagcaaagaaccttgcaga 719
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tgactacatcagtatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcaga 668

Query: 720 ggcgttcgagcattataacgaatggcatccgcatagtgcactgggttatcgctcgccacg 779
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 669 ggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacg 728

Query: 780 ggaatatctgcggcagcaggccagtaatgggttaagtgataacaggtgtctggaaatat 838
           ||||||||||||||||| |||  |||||||||||||||||||||| |||||||||||||
Sbjct: 729 ggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatat 787

8) insD-3 in NC_012892


>NC_004337_P1|22|G18|24114249|NP_708759.1|Shigella_flexneri_2a_str._301|+|27593..28381|-|SF2985|insertion 
          Length = 789

 Score = 1357 bits (3503), Expect = 0.0
 Identities = 693/695 (100%)
 Strand = Plus / Plus

Query: 1   tatgggcgctgcttcgcagacaggcagaacttgatggtatgcctgcgatcaatgccaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  tatgggcgctgcttcgcagacaggcagaacttgatggtatgcctgcgatcaatgccaaac 154

Query: 61  gtgtttaccggatcatgcgccagaatgcgctgttgcttgagcgaaaacctgctgtaccgc 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 gtgtttaccggctcatgcgccagaatgcgctgttgcttgagcgaaaacctgctgtaccgc 214

Query: 121 catcgaaacgggcacatacaggcagagtggccgtgaaagaaagcaatcagcgatggtgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 catcgaaacgggcacatacaggcagagtggccgtgaaagaaagcaatcagcgatggtgct 274

Query: 181 ctgacgggttcgagttctgctgtgataacggagagagactgcgtgtcacgttcgcgctgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ctgacgggttcgagttctgctgtgataacggagagagactgcgtgtcacgttcgcgctgg 334

Query: 241 actgctgtgatcgtgaggcactgcactgggcggtcactaccggcggcttcaacagtgaaa 300
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 335 actgctgtgatcgtgaggcactgcactgggcggtgactaccggcggcttcaacagtgaaa 394

Query: 301 cagtacaggacgtcatgctgggagcggtggaacgccgcttcggcaacgatcttccgtcgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 cagtacaggacgtcatgctgggagcggtggaacgccgcttcggcaacgatcttccgtcgt 454

Query: 361 ctccagtggagtggctgacggataatggttcatgctaccgggctaatgaaacacgccagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ctccagtggagtggctgacggataatggttcatgctaccgggctaatgaaacacgccagt 514

Query: 421 tcgcccggatgttgggacttgaaccgaagaacacggcggtgcggagtccggagagtaacg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tcgcccggatgttgggacttgaaccgaagaacacggcggtgcggagtccggagagtaacg 574

Query: 481 gaatagcagagagcttcgtgaaaacgataaagcgtgactacatcagtatcatgcccaaac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gaatagcagagagcttcgtgaaaacgataaagcgtgactacatcagtatcatgcccaaac 634

Query: 541 cagacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 cagacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggc 694

Query: 601 atccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgta 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 atccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgta 754

Query: 661 atgggttaagtgataacagatgtctggaaatatag 695
           |||||||||||||||||||||||||||||||||||
Sbjct: 755 atgggttaagtgataacagatgtctggaaatatag 789

9) ECBD_1653 in NC_012947


>NC_004337_P1|22|G18|24114249|NP_708759.1|Shigella_flexneri_2a_str._301|+|27593..28381|-|SF2985|insertion 
          Length = 789

 Score = 1354 bits (3493), Expect = 0.0
 Identities = 691/693 (100%)
 Strand = Plus / Plus

Query: 1   tgggcgctgcttcgcagacaggcagaacttgatggtatgcctgcgatcaatgccaaacgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97  tgggcgctgcttcgcagacaggcagaacttgatggtatgcctgcgatcaatgccaaacgt 156

Query: 61  gtttaccggatcatgcgccagaatgcgctgttgcttgagcgaaaacctgctgtaccgcca 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 gtttaccggctcatgcgccagaatgcgctgttgcttgagcgaaaacctgctgtaccgcca 216

Query: 121 tcgaaacgggcacatacaggcagagtggccgtgaaagaaagcaatcagcgatggtgctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 tcgaaacgggcacatacaggcagagtggccgtgaaagaaagcaatcagcgatggtgctct 276

Query: 181 gacgggttcgagttctgctgtgataacggagagagactgcgtgtcacgttcgcgctggac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gacgggttcgagttctgctgtgataacggagagagactgcgtgtcacgttcgcgctggac 336

Query: 241 tgctgtgatcgtgaggcactgcactgggcggtcactaccggcggcttcaacagtgaaaca 300
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 337 tgctgtgatcgtgaggcactgcactgggcggtgactaccggcggcttcaacagtgaaaca 396

Query: 301 gtacaggacgtcatgctgggagcggtggaacgccgcttcggcaacgatcttccgtcgtct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gtacaggacgtcatgctgggagcggtggaacgccgcttcggcaacgatcttccgtcgtct 456

Query: 361 ccagtggagtggctgacggataatggttcatgctaccgggctaatgaaacacgccagttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ccagtggagtggctgacggataatggttcatgctaccgggctaatgaaacacgccagttc 516

Query: 421 gcccggatgttgggacttgaaccgaagaacacggcggtgcggagtccggagagtaacgga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gcccggatgttgggacttgaaccgaagaacacggcggtgcggagtccggagagtaacgga 576

Query: 481 atagcagagagcttcgtgaaaacgataaagcgtgactacatcagtatcatgcccaaacca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 atagcagagagcttcgtgaaaacgataaagcgtgactacatcagtatcatgcccaaacca 636

Query: 541 gacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 gacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcat 696

Query: 601 ccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaat 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 ccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaat 756

Query: 661 gggttaagtgataacagatgtctggaaatatag 693
           |||||||||||||||||||||||||||||||||
Sbjct: 757 gggttaagtgataacagatgtctggaaatatag 789

10) insD1 in NC_000913


>NC_004337_P1|22|G18|24114249|NP_708759.1|Shigella_flexneri_2a_str._301|+|27593..28381|-|SF2985|insertion 
          Length = 789

 Score = 1354 bits (3493), Expect = 0.0
 Identities = 691/693 (100%)
 Strand = Plus / Plus

Query: 1   tgggcgctgcttcgcagacaggcagaacttgatggtatgcctgcgatcaatgccaaacgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97  tgggcgctgcttcgcagacaggcagaacttgatggtatgcctgcgatcaatgccaaacgt 156

Query: 61  gtttaccggatcatgcgccagaatgcgctgttgcttgagcgaaaacctgctgtaccgcca 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 gtttaccggctcatgcgccagaatgcgctgttgcttgagcgaaaacctgctgtaccgcca 216

Query: 121 tcgaaacgggcacatacaggcagagtggccgtgaaagaaagcaatcagcgatggtgctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 tcgaaacgggcacatacaggcagagtggccgtgaaagaaagcaatcagcgatggtgctct 276

Query: 181 gacgggttcgagttctgctgtgataacggagagagactgcgtgtcacgttcgcgctggac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gacgggttcgagttctgctgtgataacggagagagactgcgtgtcacgttcgcgctggac 336

Query: 241 tgctgtgatcgtgaggcactgcactgggcggtcactaccggcggcttcaacagtgaaaca 300
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 337 tgctgtgatcgtgaggcactgcactgggcggtgactaccggcggcttcaacagtgaaaca 396

Query: 301 gtacaggacgtcatgctgggagcggtggaacgccgcttcggcaacgatcttccgtcgtct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gtacaggacgtcatgctgggagcggtggaacgccgcttcggcaacgatcttccgtcgtct 456

Query: 361 ccagtggagtggctgacggataatggttcatgctaccgggctaatgaaacacgccagttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ccagtggagtggctgacggataatggttcatgctaccgggctaatgaaacacgccagttc 516

Query: 421 gcccggatgttgggacttgaaccgaagaacacggcggtgcggagtccggagagtaacgga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gcccggatgttgggacttgaaccgaagaacacggcggtgcggagtccggagagtaacgga 576

Query: 481 atagcagagagcttcgtgaaaacgataaagcgtgactacatcagtatcatgcccaaacca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 atagcagagagcttcgtgaaaacgataaagcgtgactacatcagtatcatgcccaaacca 636

Query: 541 gacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 gacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcat 696

Query: 601 ccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaat 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 ccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaat 756

Query: 661 gggttaagtgataacagatgtctggaaatatag 693
           |||||||||||||||||||||||||||||||||
Sbjct: 757 gggttaagtgataacagatgtctggaaatatag 789

11) insD-7 in NC_010473


>NC_004337_P1|22|G18|24114249|NP_708759.1|Shigella_flexneri_2a_str._301|+|27593..28381|-|SF2985|insertion 
          Length = 789

 Score = 1283 bits (3310), Expect = 0.0
 Identities = 655/657 (100%)
 Strand = Plus / Plus

Query: 1   atgcctgcgatcaatgccaaacgtgtttaccggatcatgcgccagaatgcgctgttgctt 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 133 atgcctgcgatcaatgccaaacgtgtttaccggctcatgcgccagaatgcgctgttgctt 192

Query: 61  gagcgaaaacctgctgtaccgccatcgaaacgggcacatacaggcagagtggccgtgaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 gagcgaaaacctgctgtaccgccatcgaaacgggcacatacaggcagagtggccgtgaaa 252

Query: 121 gaaagcaatcagcgatggtgctctgacgggttcgagttctgctgtgataacggagagaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gaaagcaatcagcgatggtgctctgacgggttcgagttctgctgtgataacggagagaga 312

Query: 181 ctgcgtgtcacgttcgcgctggactgctgtgatcgtgaggcactgcactgggcggtcact 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 313 ctgcgtgtcacgttcgcgctggactgctgtgatcgtgaggcactgcactgggcggtgact 372

Query: 241 accggcggcttcaacagtgaaacagtacaggacgtcatgctgggagcggtggaacgccgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 accggcggcttcaacagtgaaacagtacaggacgtcatgctgggagcggtggaacgccgc 432

Query: 301 ttcggcaacgatcttccgtcgtctccagtggagtggctgacggataatggttcatgctac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ttcggcaacgatcttccgtcgtctccagtggagtggctgacggataatggttcatgctac 492

Query: 361 cgggctaatgaaacacgccagttcgcccggatgttgggacttgaaccgaagaacacggcg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 cgggctaatgaaacacgccagttcgcccggatgttgggacttgaaccgaagaacacggcg 552

Query: 421 gtgcggagtccggagagtaacggaatagcagagagcttcgtgaaaacgataaagcgtgac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 gtgcggagtccggagagtaacggaatagcagagagcttcgtgaaaacgataaagcgtgac 612

Query: 481 tacatcagtatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcagaggcg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tacatcagtatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcagaggcg 672

Query: 541 ttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 ttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaa 732

Query: 601 tatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatatag 657
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 tatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatatag 789

12) unnamed in NC_007384


>NC_004337_P1|22|G18|24114249|NP_708759.1|Shigella_flexneri_2a_str._301|+|27593..28381|-|SF2985|insertion 
          Length = 789

 Score = 1100 bits (2839), Expect = 0.0
 Identities = 575/600 (96%)
 Strand = Plus / Plus

Query: 1   cttgagcgaaaacctgctgtaccgccatcgaaacgggcacatacaggcagagtggctgtg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 190 cttgagcgaaaacctgctgtaccgccatcgaaacgggcacatacaggcagagtggccgtg 249

Query: 61  aaagaaagtaatcagcgatggtgctctgacgggttcgagttccgctgtgataacggagaa 120
           |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| 
Sbjct: 250 aaagaaagcaatcagcgatggtgctctgacgggttcgagttctgctgtgataacggagag 309

Query: 121 aaactgcgagtcacgttcgcgctggactgctgtgaccgtgaggcactgcactgggcggtc 180
           | |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| 
Sbjct: 310 agactgcgtgtcacgttcgcgctggactgctgtgatcgtgaggcactgcactgggcggtg 369

Query: 181 actacgggcggcttcaacagtgaaacagtacaggacgtcatgctgggagcggtggaacgc 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 actaccggcggcttcaacagtgaaacagtacaggacgtcatgctgggagcggtggaacgc 429

Query: 241 cgcttcggcaacgagcttccggcgtctccagtagagtggctgacggataatggttcatgc 300
           |||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 430 cgcttcggcaacgatcttccgtcgtctccagtggagtggctgacggataatggttcatgc 489

Query: 301 taccgggctaatgaaacacggcagtttgcccggatgttggggcttgaaccgaagagcacg 360
           |||||||||||||||||||| ||||| |||||||||||||| ||||||||||||| ||||
Sbjct: 490 taccgggctaatgaaacacgccagttcgcccggatgttgggacttgaaccgaagaacacg 549

Query: 361 gcggtgcggagtccggagagtaacggcatagcagagagcttcgtgaaaacgataaagcgt 420
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 550 gcggtgcggagtccggagagtaacggaatagcagagagcttcgtgaaaacgataaagcgt 609

Query: 421 gactacatcagtgtcatgcccaaaccagacgggttaacggcagcaaagaaccttgcagag 480
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 gactacatcagtatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcagag 669

Query: 481 gcgttcgagcattataacgaatggcatccgcatagtgcactgggttatcgctcgccacgg 540
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 670 gcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgg 729

Query: 541 gaatatctacggcagcaagccagtaatgggttaagtgataacaggtgtctggaaatatag 600
           |||||||| |||||||  ||  |||||||||||||||||||||| |||||||||||||||
Sbjct: 730 gaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatatag 789

13) unnamed in NC_017640


>NC_004337_P1|22|G18|24114249|NP_708759.1|Shigella_flexneri_2a_str._301|+|27593..28381|-|SF2985|insertion 
          Length = 789

 Score = 709 bits (1831), Expect = e-205
 Identities = 425/501 (85%)
 Strand = Plus / Plus

Query: 206 ttct-ctgtgataacggagaaaaactgtgtgtcacgttcgtgctggactgcggcgatcgt 264
           |||| ||||||||||||||| | |||| |||||||||||| |||||||||| | ||||||
Sbjct: 289 ttctgctgtgataacggagagagactgcgtgtcacgttcgcgctggactgctgtgatcgt 348

Query: 265 gaggctctgcactgggcggtcagctcgggcggcttcggcagtgaaactgttcaggatatc 324
           ||||| |||||||||||||| |   | |||||||||  ||||||||| || |||||  ||
Sbjct: 349 gaggcactgcactgggcggtgactaccggcggcttcaacagtgaaacagtacaggacgtc 408

Query: 325 atgctgggtatggtggagcactgcttcggcaacggtcttccgatatcgctagtggaatgg 384
           ||||||||   |||||| | | |||||||||||| |||||||   || | |||||| |||
Sbjct: 409 atgctgggagcggtggaacgccgcttcggcaacgatcttccgtcgtctccagtggagtgg 468

Query: 385 ctgacatataatggctcatgttaccgggctaatgaaacatgtcagttcgtgcggatgttg 444
           |||||  ||||||| ||||| |||||||||||||||||| | |||||||  |||||||||
Sbjct: 469 ctgacggataatggttcatgctaccgggctaatgaaacacgccagttcgcccggatgttg 528

Query: 445 ggggttgaaccgaa-aacacgtcgttgtggagtccggagagtaacggcatagcagagagc 503
           ||  |||||||||| |||||| || || ||||||||||||||||||| ||||||||||||
Sbjct: 529 ggacttgaaccgaagaacacggcggtgcggagtccggagagtaacggaatagcagagagc 588

Query: 504 ttcgtgaaaacgataaagcgtgactacatcagtatcatgccgaagcaagacaggttaacg 563
           ||||||||||||||||||||||||||||||||||||||||| || | |||| ||||||||
Sbjct: 589 ttcgtgaaaacgataaagcgtgactacatcagtatcatgcccaaaccagacgggttaacg 648

Query: 564 acagcaaagaaccttgcggaggcattcgagtaatataacgaatgtttttttcattgtgtg 623
            |||||||||||||||| ||||| |||||| | |||||||||||   |   ||| ||| |
Sbjct: 649 gcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcg 708

Query: 624 caggggtatcgctcgagacggggatatcttcggcagcgggcaagtaatgattaaagtgat 683
           | ||| |||||||||  ||||| |||||| |||||||||||  ||||||  | |||||||
Sbjct: 709 ctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgat 768

Query: 684 aacagatatctggaaatatag 704
           ||||||| |||||||||||||
Sbjct: 769 aacagatgtctggaaatatag 789


 Score = 259 bits (669), Expect = 3e-69
 Identities = 146/164 (89%)
 Strand = Plus / Plus

Query: 35  cagaacttgatggaatgtctgcgatcaacgccaaacgtatttatcggatcatgcgtcaga 94
           ||||||||||||| ||| |||||||||| ||||||||| |||| ||| ||||||| ||||
Sbjct: 119 cagaacttgatggtatgcctgcgatcaatgccaaacgtgtttaccggctcatgcgccaga 178

Query: 95  atgcgctgttgcttgaacgtaaacctgcgctaccgccatcgaaacgggcatataccggta 154
           |||||||||||||||| || ||||||||  |||||||||||||||||||| |||| || |
Sbjct: 179 atgcgctgttgcttgagcgaaaacctgctgtaccgccatcgaaacgggcacatacaggca 238

Query: 155 gcgtggcggtgacagaaagcaattagcgatggtgctctgacggg 198
           | ||||| |||| |||||||||| ||||||||||||||||||||
Sbjct: 239 gagtggccgtgaaagaaagcaatcagcgatggtgctctgacggg 282


 Score = 53 bits (135), Expect = 5e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

Query: 1   tggttatcgttgggtatgggcgctgctt 28
           |||||||||| |||||||||||||||||
Sbjct: 81  tggttatcgtcgggtatgggcgctgctt 108