> FJ172370_R1|22|G18|227433810|ACP28824.1|Acinetobacter_baumannii_3208|+|16443..18461|top|-|DNA
topoisomerase I
Length=672
Score = 447 bits (1682), Expect = 2e-126, Method: Compositional matrix adjust.
Identities = 297/638 (47%), Positives = 437/638 (69%), Gaps = 28/638 (4%)
Query 3 LMVVESPNKVASIQGYLGDDWKVVASSGHIRDLPQREFGISKPDFSLQYEYIPPQKVGNK 62
L++VESP KV I + LG + KVVAS GH+RDLP +E+GI PDF +Y+ P ++
Sbjct 4 LVIVESPGKVKKISALLGAGYKVVASVGHVRDLPPKELGIEPPDFRPHYQ--PTER---- 57
Query 63 TFPGAADRVARIKREVAKADAVYLATDPDREGEAISWHLKEALQLGEDDYERVTFTEITP 122
+ D +AR+K++VA AD + LATDPDREGEAI+WHL +AL+L + +R+TFT IT
Sbjct 58 ----GRDVLARLKKDVAAADRILLATDPDREGEAIAWHLADALKLRDP--QRITFTAITK 111
Query 123 KAIQaalraarrIDMDLVHAQEGRRALDRFVGYMVSPLLSDMLGMNLSAGRVQSVAVRLV 182
+QAA+ A+RRIDM+ V++QE+RRALDR+VGY VSP LSD G LSAGRVQS AVRLV
Sbjct 112 DKVQAAVAAPRRIDMNRVRSQEARRALDRIVGYRVSPALSDRAGQPLSAGRVQSPAVRLV 171
Query 183 VDLERRIAAFKSTKHFSAVVTFDAGAGAKWSAQWDTKPYVTEDSPYVLDEALAAKASQSR 242
VD ER IA+FK T H++A +TFD G G+ W A WDTKP ++E+ +Y++D+ALA + + R
Sbjct 172 VDREREIASFKVTEHYGAELTFDNGDGTAWRAVWDTKPHMAEGESYIMDDALALRVAAVR 231
Query 243 QFVVLESKTEEKSERPPSPLSTLGMLRAASTALKMSSAATTKAAQKLFEDGHITYIRTDS 302
+ V E EK+ P++P++T + +AA+ LK+ + T AQ+L+E+G ITY RTD+
Sbjct 232 HVTVAEVADTEKGRAPAAPFTTSTLQQAAGQRLKLRPKKTMELAQRLYEQGAITYHRTDA 291
Query 303 VNLSPDAADKVRSFAASQGMALSPEVRRWKEKASAQGGHADAVRPTHIEVEDAGADDAQR 362
N+ + + + ++A S G++L+ RRWK K +AQ GH +A+RPTH +AG D ++
Sbjct 292 PNMDDAGMEDIAAYARSAGLPLAEKPRRWKAKEGAQEGH-EAIRPTHAADLEAGETDDEK 350
Query 363 ALYRLIRLRTLVSQMADARYTVNTVRLRATDRDGF--EYVARGRKMIDAGWRALLERDPD 420
ALYRLI+ R++ SQ+ADA Y+V +VRL A D +G+ + A GR + +GW A+ +D
Sbjct 351 ALYRLIWQRAVASQLADAIYAVRSVRL-AGDAEGLAVAFTATGRTLQSPGWMAVYA--AD 407
Query 421 EEENSDDDAAKDGQVPRLAVGGDLRAIDGKVLDKKTEPPRRFTEATLLQKLEDEGVGRPA 480
+++ D++ A + +P LA G++L A G++L K T PP RFTEATL++ +E G+GRP+
Sbjct 408 ADDSDDEGEASNNPIPALAEGAGLTASSGRLLTKHTKPPTRFTEATLVKEMERLGIGRPS 467
Query 481 TFAAIMTNVLGRSYVELDKKRCLLPTEIGELVVDNLLRGQFGFMELGFTRELEVQLDAIA 540
T+AAI+ N+ GR+YV ++K L P+ IGE + D L+ G+F F EL++TR LE +LD IA
Sbjct 468 TYAAIIENITGRGYVIEGQKGYLTPSPIGETIRDALV-GRFRFAELDYTRGLEDELDQIA 526
Query 541 EGKASYRDVVEPAYRQLNEELARIAVSGEFTPRFKCPKCGTGMRRYAKPGKSPFWRCTAE 600
E+KA Y++V+ +A L++EL+++ +G +++ CP CG +++R K + FW CT+
Sbjct 527 EAKADYQGVISAAWSALDDELGKLDSAG-IAAAHPCPACGKALHR-RKGQYGFFWSCTGY 584
Query 601 AETCGHYMDDDKGKPVERTAHP------CPRCGETLRR 632
+E C + DDKGKP +R A P CP+CG L R
Sbjct 585 PE-CKTSLPDDKGKPGQRKAPPPSTGFQCPKCGKELAR 621
Score = 63.1 bits (220), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/62 (55%), Positives = 45/62 (73%), Gaps = 4/62 (6%)
Query 705 MDDDKGR--PVAIKTA-PCPKCGKAMYRRKGDHGFWWGCSGYREGCKTIMDDDKGKPVPR 761
+DD+ G+ + +I +A PCP CGKA+ RRKG+ GF W+C+GY E CKT + DDKGKP R
Sbjct 543 LDDELGKLDSAGIAAAHPCPACGKALHRRKGQYGFFWSCTGYPE-CKTSLPDDKGKPGQR 601
Query 762 AA 763
A
Sbjct 602 KA 603
Score = 50.3 bits (171), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/76 (39%), Positives = 40/76 (53%), Gaps = 18/76 (23%)
Query 665 HTCTKCNAPLRRYQKKDRETGKPTGAFG--WFCTDTENCKTFMDDDKGRPVAIKTAP--- 719
H C C +L+R G +G W CT+ +CKT + DDKG+P K++P
Sbjct 559 HPCPACGKALHR----------RKGQYGFFWSCTGYPECKTSLPDDKGKPGQRKAPPPST 608
Query 720 ---CPKCGKAMYRRKG 732
CPKCGK + RR+G
Sbjct 609 GFQCPKCGKELARRQG 624
Score = 48.4 bits (164), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/108 (33%), Positives = 52/108 (49%), Gaps = 15/108 (13%)
Query 619 TAHPCPRCGETLRRFKRKNGGGLVWVCPA-EACETFLDDVGGKPVALHT--------CTK 669
+AHPCP CG +L+R RK G+ W C + C T L D GKP + C K
Sbjct 557 AAHPCPACGKALHR--RKGQYGFFWSCTGYPECKTSLPDDKGKPGQRKAPPPSTGFQCPK 614
Query 670 CNAPLRRYQ--KKDRETGKPTGAFGWF-CTDTENCK-TFMDDDKGRPV 713
C L R Q K + G +++ + CT+ +C ++ + G+PV
Sbjct 615 CGKELARRQGVSKPKKKGMKGRPYDFYSCTGYPKCDASYQTGPDGKPV 662 |