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PAthogenisity Island DataBase (PAI DB)

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Homologs of hrpV gene of AF232004

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) hrpV
( NP_791218.1 )

negative regulator of hrp expression HrpV

NC_004578
(Pseudomonas syringae DC3000)

2e-51

2) hrpV
( YP_273540.1 )

type III negative regulator of hrp expression HrpV

NC_005773
(Pseudomonas syringae 1448A)

2e-42

3) Psyr_1202
( YP_234294.1 )

negative regulator of hrp expression HrpV

NC_007005
(Pseudomonas syringae B728a)

2e-41

4) Pmen_0021
( YP_001185528.1 )

hypothetical protein

NC_009439
(Pseudomonas mendocina ymp)

1e-34

• Sequence Alignments

1) hrpV in NC_004578


> AF232004|22|G21|3228549|AAC34758.1|Pseudomonas_syringae_pv._tomato_DC3000|-|22405..22764|hrpV|-|HrpV
Length=119

 Score =  194 bits (722),  Expect = 2e-51, Method: Compositional matrix adjust.
 Identities = 118/119 (99%), Positives = 119/119 (100%), Gaps = 0/119 (0%)

Query  1    MIEVTEKSAFYAQVAAQSPAVWPVANGVAFVSRREHHDWGIALHIEGRALRPDQLRDALQ  60
            MIEVTEKSAFYAQVAAQSPAVWPVANGVAFVSRREHHDWGIALHIEGRALRPDQLRDALQ
Sbjct  1    MIEVTEKSAFYAQVAAQSPAVWPVANGVAFVSRREHHDWGIALHIEGRALRPDQLRDALQ  60

Query  61   RRFMESERFNHYFLFLDVRRDFVVWHAVNEKPGSYASLDDIRRHELMLAGLDHLSEEMH  119
            RRFMESERFNHYFLFLDVRRDFVVWHAVNEKPGSYASLDDI+RHELMLAGLDHLSEEMH
Sbjct  61   RRFMESERFNHYFLFLDVRRDFVVWHAVNEKPGSYASLDDIHRHELMLAGLDHLSEEMH  119

2) hrpV in NC_005773


> AF232004|22|G21|3228549|AAC34758.1|Pseudomonas_syringae_pv._tomato_DC3000|-|22405..22764|hrpV|-|HrpV
Length=119

 Score =  165 bits (609),  Expect = 2e-42, Method: Compositional matrix adjust.
 Identities = 91/115 (80%), Positives = 108/115 (94%), Gaps = 0/115 (0%)

Query  1    MIEVKEKAAFYYNVAAQSPAVWPVANGVSFVSRREHHDWGIALHIEGRALRPEQLREALQ  60
            MIEV EK+AFY +VAAQSPAVWPVANGV+FVSRREHHDWGIALHIEGRALRP+QLR+ALQ
Sbjct  1    MIEVTEKSAFYAQVAAQSPAVWPVANGVAFVSRREHHDWGIALHIEGRALRPDQLRDALQ  60

Query  61   MRFSEAERFRNYFLFLDVQRDFVVWHAVSDAPDAVTNLDDIRRHELMLAGLEHLA  115
             RF E+ERF +YFLFLDV+RDFVVWHAV++ P++ ++LDDI+RHELMLAGL+HL+
Sbjct  61   RRFMESERFNHYFLFLDVRRDFVVWHAVNEKPGSYASLDDIHRHELMLAGLDHLS  115

3) Psyr_1202 in NC_007005


> AF232004|22|G21|3228549|AAC34758.1|Pseudomonas_syringae_pv._tomato_DC3000|-|22405..22764|hrpV|-|HrpV
Length=119

 Score =  161 bits (594),  Expect = 2e-41, Method: Compositional matrix adjust.
 Identities = 91/115 (80%), Positives = 108/115 (94%), Gaps = 0/115 (0%)

Query  1    MIEVEEKTAFYYNVAAQSPAVWPVANGVSFVSRREHHDWGIALHIEGRALRPEQLREALQ  60
            MIEV EK+AFY +VAAQSPAVWPVANGV+FVSRREHHDWGIALHIEGRALRP+QLR+ALQ
Sbjct  1    MIEVTEKSAFYAQVAAQSPAVWPVANGVAFVSRREHHDWGIALHIEGRALRPDQLRDALQ  60

Query  61   LRFSEAERFNDYFLFLDMRRDFVVWHAVSDAPHAVTNLDDIRRNELILAGLDHLA  115
             RF E+ERFN+YFLFLD+RRDFVVWHAV++ P + ++LDDI+R+EL+LAGLDHL+
Sbjct  61   RRFMESERFNHYFLFLDVRRDFVVWHAVNEKPGSYASLDDIHRHELMLAGLDHLS  115

4) Pmen_0021 in NC_009439


> AF232004|22|G21|3228549|AAC34758.1|Pseudomonas_syringae_pv._tomato_DC3000|-|22405..22764|hrpV|-|HrpV
Length=119

 Score =  139 bits (510),  Expect = 1e-34, Method: Compositional matrix adjust.
 Identities = 72/114 (64%), Positives = 99/114 (87%), Gaps = 0/114 (0%)

Query  1    MKQVSQKLAFYEHVAAERSAVWPVASGVTFVSRREHQDWGIALHVESLAMSPEQLRNALE  60
            M +V++K AFY +VAA+ +AVWPVA+GV+FVSRREH+DWGIALH+E+ A+ P+QLR+AL+
Sbjct  1    MIEVTEKSAFYAQVAAQSPAVWPVANGVAFVSRREHHDWGIALHIEGRALRPDQLRDALQ  60

Query  61   RRFVESDRYSDYFLFLNVQQDFVVWHASPDVEGVGDSLDDICREQLQLAGLGHL  114
            RRF+ES+R+++YFLFL+V++DFVVWHA  +  G   SLDDI R++L LAGL+HL
Sbjct  61   RRFMESERFNHYFLFLDVRRDFVVWHAVNEKPGSYASLDDIHRHELMLAGLDHL  114