Homolog Viewer

PAthogenisity Island DataBase (PAI DB)

Home PAIs REIs Genomes Search Links

Homologs of XC_3021 gene of NC_007086_P1

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) XC_3021
( YP_244089.1 )

HrpE protein

NC_007086
(Xanthomonas campestris 8004)

9e-36

100

2) hrpE
( NP_636595.1 )

HrpE protein

NC_003902
(Xanthomonas campestris ATCC 33913)

9e-36

100

3) hrpE
( YP_001904489.1 )

type III secretion system pilus protein

NC_010688
(Xanthomonas campestris B100)

9e-36

100

4) hrpE
( YP_362148.1 )

HrpE protein

NC_007508
(Xanthomonas campestris 85-10)

2e-13

5) hrpE
( NP_640752.1 )

HrpE protein

NC_003919
(Xanthomonas axonopodis 306)

4e-12

6) XAC29_02035
( YP_007634900.1 )

HrpE protein

NC_020800
(Xanthomonas axonopodis Xac29-1)

4e-12

7) hrpE
( YP_007648822.1 )

HrpE protein

NC_020815
(Xanthomonas citri Aw12879)

4e-12

8) hrpE
( YP_198715.1 )

hypothetical protein

NC_006834
(Xanthomonas oryzae KACC10331)

1e-11

9) XOO_0100
( YP_449129.1 )

HrpE1 protein

NC_007705
(Xanthomonas oryzae MAFF 311018)

1e-11

• Sequence Alignments

1) XC_3021 in NC_007086


> NC_007086_P1|21|G21|66769327|YP_244089.1|Xanthomonas_campestris_pv._campestris_str._8004|+|16896..17168|-|XC_3021|HrpE 
protein
Length=90

 Score =  143 bits (525),  Expect = 9e-36, Method: Compositional matrix adjust.
 Identities = 90/90 (100%), Positives = 90/90 (100%), Gaps = 0/90 (0%)

Query  1   MLNLQSIVPRLGQARDLLGSDLSSRFDNHTATQTSDNQMDSLMGGIGKSAAAQERMNNYL  60
           MLNLQSIVPRLGQARDLLGSDLSSRFDNHTATQTSDNQMDSLMGGIGKSAAAQERMNNYL
Sbjct  1   MLNLQSIVPRLGQARDLLGSDLSSRFDNHTATQTSDNQMDSLMGGIGKSAAAQERMNNYL  60

Query  61  TAKKNELDFNVALNKFIGKAGDNAKQLVGQ  90
           TAKKNELDFNVALNKFIGKAGDNAKQLVGQ
Sbjct  61  TAKKNELDFNVALNKFIGKAGDNAKQLVGQ  90

2) hrpE in NC_003902


> NC_007086_P1|21|G21|66769327|YP_244089.1|Xanthomonas_campestris_pv._campestris_str._8004|+|16896..17168|-|XC_3021|HrpE 
protein
Length=90

 Score =  143 bits (525),  Expect = 9e-36, Method: Compositional matrix adjust.
 Identities = 90/90 (100%), Positives = 90/90 (100%), Gaps = 0/90 (0%)

Query  1   MLNLQSIVPRLGQARDLLGSDLSSRFDNHTATQTSDNQMDSLMGGIGKSAAAQERMNNYL  60
           MLNLQSIVPRLGQARDLLGSDLSSRFDNHTATQTSDNQMDSLMGGIGKSAAAQERMNNYL
Sbjct  1   MLNLQSIVPRLGQARDLLGSDLSSRFDNHTATQTSDNQMDSLMGGIGKSAAAQERMNNYL  60

Query  61  TAKKNELDFNVALNKFIGKAGDNAKQLVGQ  90
           TAKKNELDFNVALNKFIGKAGDNAKQLVGQ
Sbjct  61  TAKKNELDFNVALNKFIGKAGDNAKQLVGQ  90

3) hrpE in NC_010688


> NC_007086_P1|21|G21|66769327|YP_244089.1|Xanthomonas_campestris_pv._campestris_str._8004|+|16896..17168|-|XC_3021|HrpE 
protein
Length=90

 Score =  143 bits (525),  Expect = 9e-36, Method: Compositional matrix adjust.
 Identities = 90/90 (100%), Positives = 90/90 (100%), Gaps = 0/90 (0%)

Query  1   MLNLQSIVPRLGQARDLLGSDLSSRFDNHTATQTSDNQMDSLMGGIGKSAAAQERMNNYL  60
           MLNLQSIVPRLGQARDLLGSDLSSRFDNHTATQTSDNQMDSLMGGIGKSAAAQERMNNYL
Sbjct  1   MLNLQSIVPRLGQARDLLGSDLSSRFDNHTATQTSDNQMDSLMGGIGKSAAAQERMNNYL  60

Query  61  TAKKNELDFNVALNKFIGKAGDNAKQLVGQ  90
           TAKKNELDFNVALNKFIGKAGDNAKQLVGQ
Sbjct  61  TAKKNELDFNVALNKFIGKAGDNAKQLVGQ  90

4) hrpE in NC_007508


> NC_007086_P1|21|G21|66769327|YP_244089.1|Xanthomonas_campestris_pv._campestris_str._8004|+|16896..17168|-|XC_3021|HrpE 
protein
Length=90

 Score = 68.9 bits (242),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 46/82 (57%), Positives = 63/82 (77%), Gaps = 0/82 (0%)

Query  12  SRVGQGMDCFTGGLSNGISGAAALSGANGQMDSLLGDMSASDEAQKSMNNKITMLKNDLD  71
           +R+GQ+ D + ++LS+ +   +A   ++ QMDSL+G+++ S  AQ  MNN +T  KN+LD
Sbjct  9   PRLGQARDLLGSDLSSRFDNHTATQTSDNQMDSLMGGIGKSAAAQERMNNYLTAKKNELD  68

Query  72  FNVALNKFIGKAGDNAKQLVGQ  93
           FNVALNKFIGKAGDNAKQLVGQ
Sbjct  69  FNVALNKFIGKAGDNAKQLVGQ  90

5) hrpE in NC_003919


> NC_007086_P1|21|G21|66769327|YP_244089.1|Xanthomonas_campestris_pv._campestris_str._8004|+|16896..17168|-|XC_3021|HrpE 
protein
Length=90

 Score = 65.0 bits (227),  Expect = 4e-12, Method: Compositional matrix adjust.
 Identities = 44/88 (50%), Positives = 65/88 (74%), Gaps = 0/88 (0%)

Query  6   QISSIKSRFDQGTDAYTGGVSGGISGEAALTGANGQMSSLISDMNASDEAQKSMNNKITQ  65
           ++ SI +R++Q+ D   +++S+ +  ++A   ++ QM SL++++  S  AQ  MNN +T 
Sbjct  3   NLQSIVPRLGQARDLLGSDLSSRFDNHTATQTSDNQMDSLMGGIGKSAAAQERMNNYLTA  62

Query  66  LKNDLDFNVALNKFIGKAGDNAKQLVGQ  93
            KN+LDFNVALNKFIGKAGDNAKQLVGQ
Sbjct  63  KKNELDFNVALNKFIGKAGDNAKQLVGQ  90

6) XAC29_02035 in NC_020800


> NC_007086_P1|21|G21|66769327|YP_244089.1|Xanthomonas_campestris_pv._campestris_str._8004|+|16896..17168|-|XC_3021|HrpE 
protein
Length=90

 Score = 65.0 bits (227),  Expect = 4e-12, Method: Compositional matrix adjust.
 Identities = 44/88 (50%), Positives = 65/88 (74%), Gaps = 0/88 (0%)

Query  6   QISSIKSRFDQGTDAYTGGVSGGISGEAALTGANGQMSSLISDMNASDEAQKSMNNKITQ  65
           ++ SI +R++Q+ D   +++S+ +  ++A   ++ QM SL++++  S  AQ  MNN +T 
Sbjct  3   NLQSIVPRLGQARDLLGSDLSSRFDNHTATQTSDNQMDSLMGGIGKSAAAQERMNNYLTA  62

Query  66  LKNDLDFNVALNKFIGKAGDNAKQLVGQ  93
            KN+LDFNVALNKFIGKAGDNAKQLVGQ
Sbjct  63  KKNELDFNVALNKFIGKAGDNAKQLVGQ  90

7) hrpE in NC_020815


> NC_007086_P1|21|G21|66769327|YP_244089.1|Xanthomonas_campestris_pv._campestris_str._8004|+|16896..17168|-|XC_3021|HrpE 
protein
Length=90

 Score = 65.0 bits (227),  Expect = 4e-12, Method: Compositional matrix adjust.
 Identities = 44/88 (50%), Positives = 65/88 (74%), Gaps = 0/88 (0%)

Query  6   QISSIKSRFDQGTDAYTGGVSGGISGEAALTGANGQMSSLISDMTASDEAQKSMNNKITQ  65
           ++ SI +R++Q+ D   +++S+ +  ++A   ++ QM SL++++  S  AQ  MNN +T 
Sbjct  3   NLQSIVPRLGQARDLLGSDLSSRFDNHTATQTSDNQMDSLMGGIGKSAAAQERMNNYLTA  62

Query  66  LKNDLDFNVALNKFIGKAGDNAKQLVGQ  93
            KN+LDFNVALNKFIGKAGDNAKQLVGQ
Sbjct  63  KKNELDFNVALNKFIGKAGDNAKQLVGQ  90

8) hrpE in NC_006834


> NC_007086_P1|21|G21|66769327|YP_244089.1|Xanthomonas_campestris_pv._campestris_str._8004|+|16896..17168|-|XC_3021|HrpE 
protein
Length=90

 Score = 63.4 bits (221),  Expect = 1e-11, Method: Compositional matrix adjust.
 Identities = 44/88 (50%), Positives = 65/88 (74%), Gaps = 0/88 (0%)

Query  6   QISSLNSRFQQGMDGYTGGVANGISGASALSGSNGQMGSLLGDMSASDEAQKSMNNKITQ  65
           ++ S+ +R+ Q+ D   +++++ +   +A   S+ QM+SL+G+++ S  AQ  MNN +T 
Sbjct  3   NLQSIVPRLGQARDLLGSDLSSRFDNHTATQTSDNQMDSLMGGIGKSAAAQERMNNYLTA  62

Query  66  LKNDLDFNVALNKFIGKAGDNAKQLVGQ  93
            KN+LDFNVALNKFIGKAGDNAKQLVGQ
Sbjct  63  KKNELDFNVALNKFIGKAGDNAKQLVGQ  90

9) XOO_0100 in NC_007705


> NC_007086_P1|21|G21|66769327|YP_244089.1|Xanthomonas_campestris_pv._campestris_str._8004|+|16896..17168|-|XC_3021|HrpE 
protein
Length=90

 Score = 63.4 bits (221),  Expect = 1e-11, Method: Compositional matrix adjust.
 Identities = 44/88 (50%), Positives = 65/88 (74%), Gaps = 0/88 (0%)

Query  6   QISSLNSRFQQGMDGYTGGVANGISGASALSGSNGQMGSLLGDMSASDEAQKSMNNKITQ  65
           ++ S+ +R+ Q+ D   +++++ +   +A   S+ QM+SL+G+++ S  AQ  MNN +T 
Sbjct  3   NLQSIVPRLGQARDLLGSDLSSRFDNHTATQTSDNQMDSLMGGIGKSAAAQERMNNYLTA  62

Query  66  LKNDLDFNVALNKFIGKAGDNAKQLVGQ  93
            KN+LDFNVALNKFIGKAGDNAKQLVGQ
Sbjct  63  KKNELDFNVALNKFIGKAGDNAKQLVGQ  90