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Homologs of SF2984 gene of NC_004337_P1

DNA-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) SFxv_3828
( - )

NC_017328
(Shigella flexneri 2002017)

e-231

100

2) SFxv_0259
( - )

NC_017328
(Shigella flexneri 2002017)

e-229

99.8

3) SFxv_1869
( - )

NC_017328
(Shigella flexneri 2002017)

e-229

99.5

4) SFxv_1976
( - )

NC_017328
(Shigella flexneri 2002017)

e-229

99.5

5) ECSP_1481
( - )

NC_013008
(Escherichia coli TW14359)

e-203

99.4

6) unnamed
( - )

NC_007613
(Shigella boydii Sb227)

e-165

100

7) unnamed
( - )

NC_004431
(Escherichia coli CFT073)

e-160

95.8

8) unnamed
( - )

NC_004431
(Escherichia coli CFT073)

e-158

95.4

9) insC
( - )

NC_011745
(Escherichia coli ED1a)

e-158

95.4

10) insC
( - )

NC_011742
(Escherichia coli S88)

e-158

95.4

• Sequence Alignments

1) SFxv_3828 in NC_017328


>NC_004337_P1|21|G17|344915318|NP_708758.3|Shigella_flexneri_2a_str._301|+|27107..27517|-|SF2984|IS2 
          Length = 411

 Score = 796 bits (2055), Expect = e-231
 Identities = 411/412 (100%)
 Strand = Plus / Plus

Query: 1   gtgatagtcttaatactagtttttagactagtcattggagtacagatgattgatgtctta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gtgatagtcttaatactagtttttagactagtcattggagtacagatgattgatgtctta 60

Query: 61  gggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagc 120

Query: 121 tttgaaccggggatgacggtctccctcgttgcccggcaacatggtgtagcagccagccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tttgaaccggggatgacggtctccctcgttgcccggcaacatggtgtagcagccagccag 180

Query: 181 ttatttctctggcgtaagcaataccaggaaggaagtcttactgctgtggccgccggagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttatttctctggcgtaagcaataccaggaaggaagtcttactgctgtggccgccggagaa 240

Query: 241 caggttgttcctgcctctgaacttgctgccgccatgaagcagattaaagaactccagcgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 caggttgttcctgcctctgaacttgctgccgccatgaagcagattaaagaactccagcgc 300

Query: 301 ctggctcggcaagaaaacgatggaaaatgaactcctcaaagaagccgttgaatatggacg 360
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctg-ctcggcaagaaaacgatggaaaatgaactcctcaaagaagccgttgaatatggacg 359

Query: 361 ggcaaaaaagtggatagcgcacgcgcccttattgcccggggatggggagtaa 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ggcaaaaaagtggatagcgcacgcgcccttattgcccggggatggggagtaa 411

2) SFxv_0259 in NC_017328


>NC_004337_P1|21|G17|344915318|NP_708758.3|Shigella_flexneri_2a_str._301|+|27107..27517|-|SF2984|IS2 
          Length = 411

 Score = 792 bits (2044), Expect = e-229
 Identities = 410/412 (100%)
 Strand = Plus / Plus

Query: 1   gtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtctta 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1   gtgatagtcttaatactagtttttagactagtcattggagtacagatgattgatgtctta 60

Query: 61  gggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagc 120

Query: 121 tttgaaccggggatgacggtctccctcgttgcccggcaacatggtgtagcagccagccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tttgaaccggggatgacggtctccctcgttgcccggcaacatggtgtagcagccagccag 180

Query: 181 ttatttctctggcgtaagcaataccaggaaggaagtcttactgctgtggccgccggagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttatttctctggcgtaagcaataccaggaaggaagtcttactgctgtggccgccggagaa 240

Query: 241 caggttgttcctgcctctgaacttgctgccgccatgaagcagattaaagaactccagcgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 caggttgttcctgcctctgaacttgctgccgccatgaagcagattaaagaactccagcgc 300

Query: 301 ctggctcggcaagaaaacgatggaaaatgaactcctcaaagaagccgttgaatatggacg 360
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctg-ctcggcaagaaaacgatggaaaatgaactcctcaaagaagccgttgaatatggacg 359

Query: 361 ggcaaaaaagtggatagcgcacgcgcccttattgcccggggatggggagtaa 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ggcaaaaaagtggatagcgcacgcgcccttattgcccggggatggggagtaa 411

3) SFxv_1869 in NC_017328


>NC_004337_P1|21|G17|344915318|NP_708758.3|Shigella_flexneri_2a_str._301|+|27107..27517|-|SF2984|IS2 
          Length = 411

 Score = 790 bits (2037), Expect = e-229
 Identities = 409/412 (99%)
 Strand = Plus / Plus

Query: 1   gtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtctta 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1   gtgatagtcttaatactagtttttagactagtcattggagtacagatgattgatgtctta 60

Query: 61  gggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagc 120

Query: 121 tttgaaccggggatgacggtctccctcgttgcccggcaacatggtgtagcagccagccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tttgaaccggggatgacggtctccctcgttgcccggcaacatggtgtagcagccagccag 180

Query: 181 ctatttctctggcgtaagcaataccaggaaggaagtcttactgctgtggccgccggagaa 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttatttctctggcgtaagcaataccaggaaggaagtcttactgctgtggccgccggagaa 240

Query: 241 caggttgttcctgcctctgaacttgctgccgccatgaagcagattaaagaactccagcgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 caggttgttcctgcctctgaacttgctgccgccatgaagcagattaaagaactccagcgc 300

Query: 301 ctggctcggcaagaaaacgatggaaaatgaactcctcaaagaagccgttgaatatggacg 360
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctg-ctcggcaagaaaacgatggaaaatgaactcctcaaagaagccgttgaatatggacg 359

Query: 361 ggcaaaaaagtggatagcgcacgcgcccttattgcccggggatggggagtaa 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ggcaaaaaagtggatagcgcacgcgcccttattgcccggggatggggagtaa 411

4) SFxv_1976 in NC_017328


>NC_004337_P1|21|G17|344915318|NP_708758.3|Shigella_flexneri_2a_str._301|+|27107..27517|-|SF2984|IS2 
          Length = 411

 Score = 789 bits (2037), Expect = e-229
 Identities = 409/412 (99%)
 Strand = Plus / Plus

Query: 1   gtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtctta 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1   gtgatagtcttaatactagtttttagactagtcattggagtacagatgattgatgtctta 60

Query: 61  gggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagc 120

Query: 121 tttgaaccggggatgacggtctccctcgttgcccggcaacatggtgtagcagccagccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tttgaaccggggatgacggtctccctcgttgcccggcaacatggtgtagcagccagccag 180

Query: 181 ttatttctctggcgtaagcaataccaggaaggaagtcttactgctgtggccgccggagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttatttctctggcgtaagcaataccaggaaggaagtcttactgctgtggccgccggagaa 240

Query: 241 caggttgttcctgcctctgaacttgctgccgccatgaagcagattaaagaactccagcgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 caggttgttcctgcctctgaacttgctgccgccatgaagcagattaaagaactccagcgc 300

Query: 301 ctggctcggcaagaaaacgatgaaaaatgaactcctcaaagaagccgttgaatatggacg 360
           ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctg-ctcggcaagaaaacgatggaaaatgaactcctcaaagaagccgttgaatatggacg 359

Query: 361 ggcaaaaaagtggatagcgcacgcgcccttattgcccggggatggggagtaa 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ggcaaaaaagtggatagcgcacgcgcccttattgcccggggatggggagtaa 411

5) ECSP_1481 in NC_013008


>NC_004337_P1|21|G17|344915318|NP_708758.3|Shigella_flexneri_2a_str._301|+|27107..27517|-|SF2984|IS2 
          Length = 411

 Score = 706 bits (1821), Expect = e-203
 Identities = 361/363 (99%)
 Strand = Plus / Plus

Query: 1   atgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46  atgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgca 105

Query: 61  attgttcagcagagctttgaaccggggatgacggtctccctcgttgcccggcaacatggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 attgttcagcagagctttgaaccggggatgacggtctccctcgttgcccggcaacatggt 165

Query: 121 gtagcagccagccagttatttctctggcgtaagcaatactaggaaggaagtcttactgct 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 166 gtagcagccagccagttatttctctggcgtaagcaataccaggaaggaagtcttactgct 225

Query: 181 gtcgccgccggagaacaggttgttcctgcctctgaacttgctgccgccatgaagcagatt 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 gtggccgccggagaacaggttgttcctgcctctgaacttgctgccgccatgaagcagatt 285

Query: 241 aaagaactccagcgcctgctcggcaagaaaacgatggaaaatgaactcctcaaagaagcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 aaagaactccagcgcctgctcggcaagaaaacgatggaaaatgaactcctcaaagaagcc 345

Query: 301 gttgaatatggacgggcaaaaaagtggatagcgcacgcgcccttattgcccggggatggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gttgaatatggacgggcaaaaaagtggatagcgcacgcgcccttattgcccggggatggg 405

Query: 361 gag 363
           |||
Sbjct: 406 gag 408

6) unnamed in NC_007613


>NC_004337_P1|21|G17|344915318|NP_708758.3|Shigella_flexneri_2a_str._301|+|27107..27517|-|SF2984|IS2 
          Length = 411

 Score = 578 bits (1491), Expect = e-165
 Identities = 295/295 (100%)
 Strand = Plus / Plus

Query: 47  gtgatagtcttaatactagtttttagactagtcattggagtacagatgattgatgtctta 106
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gtgatagtcttaatactagtttttagactagtcattggagtacagatgattgatgtctta 60

Query: 107 gggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagc 166
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagc 120

Query: 167 tttgaaccggggatgacggtctccctcgttgcccggcaacatggtgtagcagccagccag 226
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tttgaaccggggatgacggtctccctcgttgcccggcaacatggtgtagcagccagccag 180

Query: 227 ttatttctctggcgtaagcaataccaggaaggaagtcttactgctgtggccgccggagaa 286
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttatttctctggcgtaagcaataccaggaaggaagtcttactgctgtggccgccggagaa 240

Query: 287 caggttgttcctgcctctgaacttgctgccgccatgaagcagattaaagaactcc 341
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 caggttgttcctgcctctgaacttgctgccgccatgaagcagattaaagaactcc 295

7) unnamed in NC_004431


>NC_004337_P1|21|G17|344915318|NP_708758.3|Shigella_flexneri_2a_str._301|+|27107..27517|-|SF2984|IS2 
          Length = 411

 Score = 563 bits (1452), Expect = e-160
 Identities = 295/308 (96%)
 Strand = Plus / Minus

Query: 8   ccgagcaggcgctggagttctttaatctgcttcatggcagcagcaagttcagaggcagga 67
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 308 ccgagcaggcgctggagttctttaatctgcttcatggcggcagcaagttcagaggcagga 249

Query: 68  acgacctgttctcctgcggccacagcactaagacttccctcctggtattgcttgcgccag 127
           || ||||||||||| |||||||||||| |||||||||| |||||||||||||| ||||||
Sbjct: 248 acaacctgttctccggcggccacagcagtaagacttccttcctggtattgcttacgccag 189

Query: 128 agaaataactggctggctgccacaccatgttgccgggcaacaagggagaccgtcattccc 187
           |||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct: 188 agaaataactggctggctgctacaccatgttgccgggcaacgagggagaccgtcatcccc 129

Query: 188 ggttcaaagctctgctgaacaatagcgatcttttcctgtgtagtacgccgtctgcgtttc 247
           ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 128 ggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttc 69

Query: 248 tccggtcctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaag 307
           ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 68  tccggccctaagacatcaatcatctgtactccaatgactagtctaaaaactagtattaag 9

Query: 308 actatcac 315
           ||||||||
Sbjct: 8   actatcac 1

8) unnamed in NC_004431


>NC_004337_P1|21|G17|344915318|NP_708758.3|Shigella_flexneri_2a_str._301|+|27107..27517|-|SF2984|IS2 
          Length = 411

 Score = 556 bits (1435), Expect = e-158
 Identities = 291/305 (95%)
 Strand = Plus / Plus

Query: 47  gtgatagtcttaatactagtttttagaccagtcattggagaacagatgattgatgtctta 106
           |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 1   gtgatagtcttaatactagtttttagactagtcattggagtacagatgattgatgtctta 60

Query: 107 ggaccggagaaacgcagacggcgtactacacaggaaaagatcgctattgttcagcagagc 166
           || ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 61  gggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagc 120

Query: 167 tttgaaccgggaatgacggtctcccttgttgcccggcaacacggtgtggcagccagccag 226
           ||||||||||| |||||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 121 tttgaaccggggatgacggtctccctcgttgcccggcaacatggtgtagcagccagccag 180

Query: 227 ttatttctctggcgcaagcaataccaggagggaagtcttactgctgtggccgcaggagaa 286
           |||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 181 ttatttctctggcgtaagcaataccaggaaggaagtcttactgctgtggccgccggagaa 240

Query: 287 caggtcgttcctgcctctgaacttgctgctgccatgaagcagattaaagaactccagcgc 346
           ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 241 caggttgttcctgcctctgaacttgctgccgccatgaagcagattaaagaactccagcgc 300

Query: 347 ctgct 351
           |||||
Sbjct: 301 ctgct 305

9) insC in NC_011745


>NC_004337_P1|21|G17|344915318|NP_708758.3|Shigella_flexneri_2a_str._301|+|27107..27517|-|SF2984|IS2 
          Length = 411

 Score = 556 bits (1435), Expect = e-158
 Identities = 291/305 (95%)
 Strand = Plus / Plus

Query: 1   gtgatagtcttaatactagtttttagaccagtcattggagaacagatgattgatgtctta 60
           |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 1   gtgatagtcttaatactagtttttagactagtcattggagtacagatgattgatgtctta 60

Query: 61  ggaccggagaaacgcagacggcgtactacacaggaaaagatcgctattgttcagcagagc 120
           || ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 61  gggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagc 120

Query: 121 tttgaaccgggaatgacggtctcccttgttgcccggcaacacggtgtggcagccagccag 180
           ||||||||||| |||||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 121 tttgaaccggggatgacggtctccctcgttgcccggcaacatggtgtagcagccagccag 180

Query: 181 ttatttctctggcgcaagcaataccaggagggaagtcttactgctgtggccgcaggagaa 240
           |||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 181 ttatttctctggcgtaagcaataccaggaaggaagtcttactgctgtggccgccggagaa 240

Query: 241 caggtcgttcctgcctctgaacttgctgctgccatgaagcagattaaagaactccagcgc 300
           ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 241 caggttgttcctgcctctgaacttgctgccgccatgaagcagattaaagaactccagcgc 300

Query: 301 ctgct 305
           |||||
Sbjct: 301 ctgct 305

10) insC in NC_011742


>NC_004337_P1|21|G17|344915318|NP_708758.3|Shigella_flexneri_2a_str._301|+|27107..27517|-|SF2984|IS2 
          Length = 411

 Score = 556 bits (1435), Expect = e-158
 Identities = 291/305 (95%)
 Strand = Plus / Plus

Query: 1   gtgatagtcttaatactagtttttagaccagtcattggagaacagatgattgatgtctta 60
           |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 1   gtgatagtcttaatactagtttttagactagtcattggagtacagatgattgatgtctta 60

Query: 61  ggaccggagaaacgcagacggcgtactacacaggaaaagatcgctattgttcagcagagc 120
           || ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 61  gggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagc 120

Query: 121 tttgaaccgggaatgacggtctcccttgttgcccggcaacacggtgtggcagccagccag 180
           ||||||||||| |||||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 121 tttgaaccggggatgacggtctccctcgttgcccggcaacatggtgtagcagccagccag 180

Query: 181 ttatttctctggcgcaagcaataccaggagggaagtcttactgctgtggccgcaggagaa 240
           |||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 181 ttatttctctggcgtaagcaataccaggaaggaagtcttactgctgtggccgccggagaa 240

Query: 241 caggtcgttcctgcctctgaacttgctgctgccatgaagcagattaaagaactccagcgc 300
           ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 241 caggttgttcctgcctctgaacttgctgccgccatgaagcagattaaagaactccagcgc 300

Query: 301 ctgct 305
           |||||
Sbjct: 301 ctgct 305