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Homologs of hrpT gene of EF514224

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) Psyr_1201
( YP_234293.1 )

type III secretion protein HrpT

NC_007005
(Pseudomonas syringae B728a)

8e-27

2) hrpT
( YP_002381169.1 )

HrpT protein

NC_005773
(Pseudomonas syringae 1448A)

1e-25

3) hrpT
( NP_791217.1 )

type III secretion protein

NC_004578
(Pseudomonas syringae DC3000)

5e-18

4) hrpT
( YP_005210962.1 )

protein HrpT

NC_016830
(Pseudomonas fluorescens F113)

2e-08

5) PSEBR_c2g113
( YP_004356885.1 )

type III secretion protein

NC_015379
(Pseudomonas brassicacearum NFM421)

2e-08

6) H045_00210
( YP_007395614.1 )

putative type III secretion lipoprotein

NC_020209
(Pseudomonas poae RE*1-1-14)

2e-07

7) Dd1591_1908
( YP_003004237.1 )

type III secretion lipoprotein

NC_012912
(Dickeya zeae Ech1591)

1e-04

• Sequence Alignments

1) Psyr_1201 in NC_007005


> EF514224|21|G18|148562545|ABQ88364.1|Pseudomonas_syringae_pv._syringae_61|-|16849..17052|hrpT|-|HrpT
Length=67

 Score =  113 bits (410),  Expect = 8e-27, Method: Compositional matrix adjust.
 Identities = 66/67 (99%), Positives = 67/67 (100%), Gaps = 0/67 (0%)

Query  1   MKISSVAIVLVVFATLTGCATHGCSGTACKRPDSTSRELVIWWPPDMRDGLDDQDHERDY  60
           MKISSVA+VLVVFATLTGCATHGCSGTACKRPDSTSRELVIWWPPDMRDGLDDQDHERDY
Sbjct  1   MKISSVAVVLVVFATLTGCATHGCSGTACKRPDSTSRELVIWWPPDMRDGLDDQDHERDY  60

Query  61  TVVKLRD  67
           TVVKLRD
Sbjct  61  TVVKLRD  67

2) hrpT in NC_005773


> EF514224|21|G18|148562545|ABQ88364.1|Pseudomonas_syringae_pv._syringae_61|-|16849..17052|hrpT|-|HrpT
Length=67

 Score =  109 bits (397),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 60/67 (90%), Positives = 66/67 (99%), Gaps = 0/67 (0%)

Query  1   MKISSIAVVLVLFATLSGCATHGCTGVACKRPDSTNRELVIWWPPDMRDGLDDQDHERDY  60
           MKISS+AVVLV+FATL+GCATHGC+G ACKRPDST+RELVIWWPPDMRDGLDDQDHERDY
Sbjct  1   MKISSVAVVLVVFATLTGCATHGCSGTACKRPDSTSRELVIWWPPDMRDGLDDQDHERDY  60

Query  61  TVVKLKD  67
           TVVKL+D
Sbjct  61  TVVKLRD  67

3) hrpT in NC_004578


> EF514224|21|G18|148562545|ABQ88364.1|Pseudomonas_syringae_pv._syringae_61|-|16849..17052|hrpT|-|HrpT
Length=67

 Score = 83.9 bits (299),  Expect = 5e-18, Method: Compositional matrix adjust.
 Identities = 51/67 (77%), Positives = 63/67 (95%), Gaps = 0/67 (0%)

Query  1   MMIRSltlllllfatltGCATHGCAGNACKRPDSNNRELVIWWPPDMREGLDDRDHERDY  60
           M I S++++L++FATLTGCATHGC+G ACKRPDS +RELVIWWPPDMR+GLDD+DHERDY
Sbjct  1   MKISSVAVVLVVFATLTGCATHGCSGTACKRPDSTSRELVIWWPPDMRDGLDDQDHERDY  60

Query  61  TVVQLKD  67
           TVV+L+D
Sbjct  61  TVVKLRD  67

4) hrpT in NC_016830


> EF514224|21|G18|148562545|ABQ88364.1|Pseudomonas_syringae_pv._syringae_61|-|16849..17052|hrpT|-|HrpT
Length=67

 Score = 52.4 bits (179),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 25/53 (48%), Positives = 38/53 (72%), Gaps = 1/53 (1%)

Query  17  FAGCANRFGCQGDACSRAEPDNGRLVIWWSPGMRGGLGSPEHPLDHTVVPLEN  69
           ++GCA + GC G AC R+++ +  LVIWW+P+MR+GL+  +H  D TVV L +
Sbjct  16  LTGCATH-GCSGTACKRPDSTSRELVIWWPPDMRDGLDDQDHERDYTVVKLRD  67

5) PSEBR_c2g113 in NC_015379


> EF514224|21|G18|148562545|ABQ88364.1|Pseudomonas_syringae_pv._syringae_61|-|16849..17052|hrpT|-|HrpT
Length=67

 Score = 51.9 bits (177),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 24/53 (46%), Positives = 38/53 (72%), Gaps = 1/53 (1%)

Query  17  FAGCANRSGCQGDACSRAEPDNGRLVIWWSPGMRGGLGSPEHPLDHSVVPLEN  69
           ++GCA + GC G AC R+++ +  LVIWW+P+MR+GL+  +H  D +VV L +
Sbjct  16  LTGCATH-GCSGTACKRPDSTSRELVIWWPPDMRDGLDDQDHERDYTVVKLRD  67

6) H045_00210 in NC_020209


> EF514224|21|G18|148562545|ABQ88364.1|Pseudomonas_syringae_pv._syringae_61|-|16849..17052|hrpT|-|HrpT
Length=67

 Score = 48.7 bits (165),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 28/66 (43%), Positives = 38/66 (58%), Gaps = 2/66 (3%)

Query  1   MKHRLLCVTLISAALLITGCSP-TCRGDSCSRPQSTKDKLVIWWPPQMRVEPGPSGERAD  59
           MK   + V L+  A L TGC+   C G +C RP+ST   LVIWWPP+MR   +  ++  D
Sbjct  1   MKISSVAVVLVVFATL-TGCATHGCSGTACKRPDSTSRELVIWWPPDMRDGLDDQDHERD  59

Query  60  YQTISL  65
           Y  + L
Sbjct  60  YTVVKL  65

7) Dd1591_1908 in NC_012912


> EF514224|21|G18|148562545|ABQ88364.1|Pseudomonas_syringae_pv._syringae_61|-|16849..17052|hrpT|-|HrpT
Length=67

 Score = 39.8 bits (131),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 34/50 (68%), Gaps = 6/50 (12%)

Query  6   LLLFFGMLLSACAARTPPGACVSVSC-RPDPDSRQMVIWWQTDMRPGAAD  54
           +L+ F+ L ++CA++    +C + +C RPD+ SR++VIWW  DMR G  D
Sbjct  9   VLVVFATL-TGCATH----GCSGTACKRPDSTSRELVIWWPPDMRDGLDD  53