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Homologs of hrcU gene of AF232004

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) hrcU
( NP_791219.1 )

type III secretion protein HrcU

NC_004578
(Pseudomonas syringae DC3000)

4e-133

2) HrcU
( YP_234297.1 )

type III secretion protein HrcU

NC_007005
(Pseudomonas syringae B728a)

3e-129

3) hrcU
( YP_273541.1 )

type III secretion component protein HrcU

NC_005773
(Pseudomonas syringae 1448A)

2e-124

4) Pmen_0049
( YP_001185555.1 )

YscU/HrpY family type III secretion protein

NC_009439
(Pseudomonas mendocina ymp)

1e-97

5) hrcU
( YP_005210966.1 )

protein HrcU

NC_016830
(Pseudomonas fluorescens F113)

5e-72

6) hrcU
( YP_003883249.1 )

type III secretion inner membrane protein

NC_014500
(Dickeya dadantii 3937)

3e-71

7) Dd1591_1882
( YP_003004211.1 )

YscU/HrpY family type III secretion protein

NC_012912
(Dickeya zeae Ech1591)

3e-69

8) hrcU
( YP_003539971.1 )

type III secretion system protein

NC_013971
(Erwinia amylovora ATCC 49946)

4e-68

9) hrcU
( YP_003529883.1 )

type III secretion protein HrcU

NC_013961
(Erwinia amylovora CFBP1430)

4e-68

10) Dd586_1879
( YP_003333443.1 )

type III secretion protein, YscU/HrpY family

NC_013592
(Dickeya dadantii Ech586)

4e-67

11) hrcU
( YP_005818252.1 )

HrcU

NC_017445
(Erwinia sp. Ejp617)

1e-66

12) Ser39006_2922
( YP_008523304.1 )

type III secretion protein, YscU/HrpY family

NC_022268
(Serratia sp. ATCC 39006)

2e-65

13) PSEBR_a5379
( YP_004356889.1 )

type III secretion protein, membrane protein

NC_015379
(Pseudomonas brassicacearum NFM421)

6e-65

14) rscU
( YP_002870383.1 )

putative type III secretion protein

NC_012660
(Pseudomonas fluorescens SBW25)

1e-64

15) hrcU
( YP_005804094.1 )

type III secretion protein HrcU

NC_017390
(Erwinia pyrifoliae DSM 12163)

7e-64

16) hrcU
( YP_002650077.1 )

Hrp/hrc secretion/translocation pathway protein HrcU

NC_012214
(Erwinia pyrifoliae Ep1/96)

7e-64

17) hrcU
( YP_001906460.1 )

HrcU protein

NC_010694
(Erwinia tasmaniensis Et1/99)

7e-64

18) Marme_1068
( YP_004312179.1 )

type III secretion protein, YscU/HrpY family

NC_015276
(Marinomonas mediterranea MMB-1)

6e-63

19) H045_00205
( YP_007395613.1 )

putative type III secretion protein

NC_020209
(Pseudomonas poae RE*1-1-14)

1e-62

20) D781_3935
( YP_007346310.1 )

type III secretion protein, YscU/HrpY family

NC_020064
(Serratia marcescens FGI94)

4e-61

21) hrcU
( YP_050171.1 )

type III secretion system protein

NC_004547
(Pectobacterium atrosepticum SCRI1043)

4e-60

22) PC1_2215
( YP_003017790.1 )

YscU/HrpY family type III secretion protein

NC_012917
(Pectobacterium carotovorum PC1)

7e-57

23) PCC21_022940
( YP_006646950.1 )

type III secretion protein

NC_018525
(Pectobacterium carotovorum PCC21)

3e-55

24) rscU
( YP_006322234.1 )

type III secretion protein RscU

NC_017911
(Pseudomonas fluorescens A506)

2e-51

• Sequence Alignments

1) hrcU in NC_004578


> AF232004|21|G20|11276519|AAG33887.1|Pseudomonas_syringae_pv._tomato_DC3000|+|20927..21862|hrcU|-|HrcU
Length=311

 Score =  467 bits (1760),  Expect = 4e-133, Method: Compositional matrix adjust.
 Identities = 310/311 (99%), Positives = 311/311 (100%), Gaps = 0/311 (0%)

Query  49   VNRLQALLALTFKGIERPFMSAVELIASEGLSVVLSFTLCSVGLAMLMRLISSWVQIGFL  108
            +NRLQALLALTFKGIERPFMSAVELIASEGLSVVLSFTLCSVGLAMLMRLISSWVQIGFL
Sbjct  1    MNRLQALLALTFKGIERPFMSAVELIASEGLSVVLSFTLCSVGLAMLMRLISSWVQIGFL  60

Query  109  FAPKALKLDIKKIDPFSHAKQMFSGQNILNLLLSILKAVAIGATLYTQVKPALGTLILLA  168
            FAPKALKLDIKKIDPFSHAKQMFSGQNILNLLLSILKAVAIGATLYTQVKPALGTLILLA
Sbjct  61   FAPKALKLDIKKIDPFSHAKQMFSGQNILNLLLSILKAVAIGATLYTQVKPALGTLILLA  120

Query  169  NSDLATYLHALIELFQHvlrvilglllvialiDFAMQKYFHAKKLRMSHEDIKKEYKQSE  228
            NSDLATYLHALIELFQHVLRVILGLLLVIALIDFAMQKYFHAKKLRMSHEDIKKEYKQSE
Sbjct  121  NSDLATYLHALIELFQHVLRVILGLLLVIALIDFAMQKYFHAKKLRMSHEDIKKEYKQSE  180

Query  229  GDPHVKGHRRQLAHEILNQEPSAAPKPVEEADMLLVNPTHYAVALYYRPGETPLPMIHCK  288
            GDPHVKGHRRQLAHEILNQEPSAAPKPVEEADMLLVNPTHYAVALYYRPGETPLPMIHCK
Sbjct  181  GDPHVKGHRRQLAHEILNQEPSAAPKPVEEADMLLVNPTHYAVALYYRPGETPLPMIHCK  240

Query  289  GEDEDALALIAQAKKAGIPVVQSIWLARTLYKVNVGKYIPRPTLLAVGHIYKVVRQLEEI  348
            GEDEDALALIAQAKKAGIPVVQSIWLARTLYKVNVGKYIPRPTLLAVGHIYKVVRQLEEI
Sbjct  241  GEDEDALALIAQAKKAGIPVVQSIWLARTLYKVNVGKYIPRPTLLAVGHIYKVVRQLEEI  300

Query  349  TDEVIRIDDDM  359
            TDEVIRIDDDM
Sbjct  301  TDEVIRIDDDM  311

2) HrcU in NC_007005


> AF232004|21|G20|11276519|AAG33887.1|Pseudomonas_syringae_pv._tomato_DC3000|+|20927..21862|hrcU|-|HrcU
Length=311

 Score =  454 bits (1710),  Expect = 3e-129, Method: Compositional matrix adjust.
 Identities = 263/311 (85%), Positives = 302/311 (98%), Gaps = 0/311 (0%)

Query  49   VNRLEALLSLSFQGIDRSFAASVELIASEGLSVLLSFTLCSVGIAMLMRLISSWMQIGFL  108
            +NRL+ALL+L+F+GI+R+F ++VELIASEGLSV+LSFTLCSVG+AMLMRLISSW+QIGFL
Sbjct  1    MNRLQALLALTFKGIERPFMSAVELIASEGLSVVLSFTLCSVGLAMLMRLISSWVQIGFL  60

Query  109  FAPKALKIDPNKINPFSHAKQMFSGQnllnlllSVLKAIAIGATLYVQVKPVLGTLVLLA  168
            FAPKALK+D +KI+PFSHAKQMFSGQN+LNLLLS+LKA+AIGATLY QVKP LGTL+LLA
Sbjct  61   FAPKALKLDIKKIDPFSHAKQMFSGQNILNLLLSILKAVAIGATLYTQVKPALGTLILLA  120

Query  169  NSDLTTYWHALVELFRHILRVILGLLLAIAMIDFAMQKYFHAKKLRMSHEDIKKEYKQSE  228
            NSDL+TY HAL+ELF+H+LRVILGLLL IA+IDFAMQKYFHAKKLRMSHEDIKKEYKQSE
Sbjct  121  NSDLATYLHALIELFQHVLRVILGLLLVIALIDFAMQKYFHAKKLRMSHEDIKKEYKQSE  180

Query  229  GDPHVKGHRRQLAQEILNQEPSAAPKPVEDADMLLVNPTHYAVALYYRPGETPLPLIHCK  288
            GDPHVKGHRRQLA+EILNQEPSAAPKPVE+ADMLLVNPTHYAVALYYRPGETPLP+IHCK
Sbjct  181  GDPHVKGHRRQLAHEILNQEPSAAPKPVEEADMLLVNPTHYAVALYYRPGETPLPMIHCK  240

Query  289  GEDEEALALIARAKKAGIPVVQSIWLTRTLYRSKVGKYIPRPTLQAVGHIYKVVRQLDEV  348
            GEDE+ALALIA+AKKAGIPVVQSIWL+RTLY+ +VGKYIPRPTL AVGHIYKVVRQL+E+
Sbjct  241  GEDEDALALIAQAKKAGIPVVQSIWLARTLYKVNVGKYIPRPTLLAVGHIYKVVRQLEEI  300

Query  349  TDEVIQVEVEL  359
            TDEVI+++ ++
Sbjct  301  TDEVIRIDDDM  311

3) hrcU in NC_005773


> AF232004|21|G20|11276519|AAG33887.1|Pseudomonas_syringae_pv._tomato_DC3000|+|20927..21862|hrcU|-|HrcU
Length=311

 Score =  438 bits (1649),  Expect = 2e-124, Method: Compositional matrix adjust.
 Identities = 270/311 (87%), Positives = 305/311 (99%), Gaps = 0/311 (0%)

Query  49   VDRLQALLALSFKGIDRSFAASVELIASEGLSVLLSFTLCSVGMAMLMRLVSSWMQIGFL  108
            ++RLQALLAL+FKGI+R+F ++VELIASEGLSV+LSFTLCSVG+AMLMRL+SSW+QIGFL
Sbjct  1    MNRLQALLALTFKGIERPFMSAVELIASEGLSVVLSFTLCSVGLAMLMRLISSWVQIGFL  60

Query  109  FAPKALKLDINKINPFSHAKQMFSGQNILNLLLSILKAVAIGATLYMQVKPALGALILLA  168
            FAPKALKLDI+KI+PFSHAKQMFSGQNILNLLLSILKAVAIGATLY QVKPALG+LILLA
Sbjct  61   FAPKALKLDIKKIDPFSHAKQMFSGQNILNLLLSILKAVAIGATLYTQVKPALGTLILLA  120

Query  169  NSDLTTYWHALVELFRHilrvilglllvvAMVDFAMQKYFHAKKLRMSHEDIKKEYKQSE  228
            NSDL+TY HAL+ELF+H+LRVILGLLLV+A++DFAMQKYFHAKKLRMSHEDIKKEYKQSE
Sbjct  121  NSDLATYLHALIELFQHVLRVILGLLLVIALIDFAMQKYFHAKKLRMSHEDIKKEYKQSE  180

Query  229  GDPHVKGHRRQLSHEILNQEPSAAPNPVEEADMLLVNPTHYAVALYYRPGETPLPLIHCK  288
            GDPHVKGHRRQL+HEILNQEPSAAP+PVEEADMLLVNPTHYAVALYYRPGETPLP+IHCK
Sbjct  181  GDPHVKGHRRQLAHEILNQEPSAAPKPVEEADMLLVNPTHYAVALYYRPGETPLPMIHCK  240

Query  289  GEDEEALALIARAKKAGIPVVQSIWLTRTLYRAKVGKYIPRPTLQAVGHIYKVVRQLDEI  348
            GEDE+ALALIA+AKKAGIPVVQSIWL+RTLY+ +VGKYIPRPTL AVGHIYKVVRQL+EI
Sbjct  241  GEDEDALALIAQAKKAGIPVVQSIWLARTLYKVNVGKYIPRPTLLAVGHIYKVVRQLEEI  300

Query  349  TDEVIQVEVEL  359
            TDEVI+++ ++
Sbjct  301  TDEVIRIDDDM  311

4) Pmen_0049 in NC_009439


> AF232004|21|G20|11276519|AAG33887.1|Pseudomonas_syringae_pv._tomato_DC3000|+|20927..21862|hrcU|-|HrcU
Length=311

 Score =  349 bits (1311),  Expect = 1e-97, Method: Compositional matrix adjust.
 Identities = 210/311 (68%), Positives = 273/311 (88%), Gaps = 0/311 (0%)

Query  49   VQRLQHLMALAINATGQPFLRIVGQLVDEAVTVLLGFLIFSVGVAMVMRLAGGWAQFGFL  108
            ++RLQ L+AL++++  +PF+  V  +  E+++V+L+F + SVG+AM+MRL ++W Q+GFL
Sbjct  1    MNRLQALLALTFKGIERPFMSAVELIASEGLSVVLSFTLCSVGLAMLMRLISSWVQIGFL  60

Query  109  FAPKALKIDFNKLNPFPQLKQMFSAQNLTNLLMSILKAAVIGITLYVLLWPELGTLILLA  168
            FAPKALK+D++K++PF++ KQMFS+QN+ NLL+SILKA  IG TLY  + P LGTLILLA
Sbjct  61   FAPKALKLDIKKIDPFSHAKQMFSGQNILNLLLSILKAVAIGATLYTQVKPALGTLILLA  120

Query  169  NSDLDTYWQSLMEVFRYILRCTLGLLLVLAAVDFGLQKYFHAKKLRMSKDDVKKEYKQSE  228
            NSDL TY ++L+E+F+ +LR  LGLLLV+A +DF++QKYFHAKKLRMS +D+KKEYKQSE
Sbjct  121  NSDLATYLHALIELFQHVLRVILGLLLVIALIDFAMQKYFHAKKLRMSHEDIKKEYKQSE  180

Query  229  GDPMVKGQRRQLAHELLNQPPSTAARPVEEADMLVVNPTHYAVALYYRPGKTPLPMIHCK  288
            GDP VKG+RRQLAHE+LNQ PS+A++PVEEADML+VNPTHYAVALYYRPG TPLPMIHCK
Sbjct  181  GDPHVKGHRRQLAHEILNQEPSAAPKPVEEADMLLVNPTHYAVALYYRPGETPLPMIHCK  240

Query  289  GEDEDalaliarakkariPVVQSVWLARTLYKVNAGRHIPRPTLEAVAHIYQLVKQLDEV  348
            GEDEDALALIA+AKKA IPVVQS+WLARTLYKVN G+ IPRPTL AV+HIY++V+QL+E+
Sbjct  241  GEDEDALALIAQAKKAGIPVVQSIWLARTLYKVNVGKYIPRPTLLAVGHIYKVVRQLEEI  300

Query  349  TDEIIQADSGL  359
            TDE+I+ D ++
Sbjct  301  TDEVIRIDDDM  311

5) hrcU in NC_016830


> AF232004|21|G20|11276519|AAG33887.1|Pseudomonas_syringae_pv._tomato_DC3000|+|20927..21862|hrcU|-|HrcU
Length=311

 Score =  264 bits (986),  Expect = 5e-72, Method: Compositional matrix adjust.
 Identities = 159/310 (52%), Positives = 248/310 (80%), Gaps = 1/310 (0%)

Query  53   MQALGDMVTFPLRRLDVDFVRAFEETLAHAGGVLLNFTLMTVGLAIVTRLVAGWIQFGFL  112
            M+ L  ++++ ++ ++  F+ A E   +++ +V+L+FTL +VGLA++ RL+++W+Q+GFL
Sbjct  1    MNRLQALLALTFKGIERPFMSAVELIASEGLSVVLSFTLCSVGLAMLMRLISSWVQIGFL  60

Query  113  FAPEALQPDPNRLNPLNQAKQMFSGQALINLFMGLVKAVFIGTVIYLVTLPALGSLINLV  172
            FAP AL+ D ++++P+++AKQMFSGQ ++NL+++++KAV IG+ +Y    PALG+LI L 
Sbjct  61   FAPKALKLDIKKIDPFSHAKQMFSGQNILNLLLSILKAVAIGATLYTQVKPALGTLILLA  120

Query  173  NGDLHSYWRGLASLFRHIMHICLGVLLVLAILDFGLQKYFFAKRLRMSeeevrkefkeme  232
            N+DL +Y ++L  LF+H++++ LG+LLV+A++DF++QKYF AK+LRMS+E+++KE+K+ E
Sbjct  121  NSDLATYLHALIELFQHVLRVILGLLLVIALIDFAMQKYFHAKKLRMSHEDIKKEYKQSE  180

Query  233  GDPHVKMHRRSLARQLVDQPVNKETKPVEDADMLVVNPTHFAVALLYRPEETPLPQLIVK  292
            GDPHVK HRR LA+++++Q  +   KPVE+ADML+VNPTH+AVAL YRP ETPLP +  K
Sbjct  181  GDPHVKGHRRQLAHEILNQEPSAAPKPVEEADMLLVNPTHYAVALYYRPGETPLPMIHCK  240

Query  293  GVDAEARALIERAKAARVPVIQCVWLARTIYREDVGGYIPRETLQAVAHIYRVLRELDDE  352
            G D +A ALI +AK A +PV+Q +WLART+Y+ +VG YIPR TL AV+HIY+V+R+L +E
Sbjct  241  GEDEDALALIAQAKKAGIPVVQSIWLARTLYKVNVGKYIPRPTLLAVGHIYKVVRQL-EE  299

Query  353  AKGEVIEIPE  362
              +EVI I +
Sbjct  300  ITDEVIRIDD  309

6) hrcU in NC_014500


> AF232004|21|G20|11276519|AAG33887.1|Pseudomonas_syringae_pv._tomato_DC3000|+|20927..21862|hrcU|-|HrcU
Length=311

 Score =  261 bits (977),  Expect = 3e-71, Method: Compositional matrix adjust.
 Identities = 154/299 (52%), Positives = 237/299 (80%), Gaps = 1/299 (0%)

Query  49   MSKLQALMQLPLSRITDPFGHAADEIFSEALSLLTTFCLLTISVALLMRLVGGWIQYGPL  108
            M++LQAL+ L +  I  PF  A + I SE+LS++ +F L ++++A+LMRL+++W+Q G L
Sbjct  1    MNRLQALLALTFKGIERPFMSAVELIASEGLSVVLSFTLCSVGLAMLMRLISSWVQIGFL  60

Query  109  FAVEALKIDFNRLNPINQIKQMFTMRKLTDMLTNILKAVTIGLVFWLVVMPQLEWLVELA  168
            FA  ALK+D+++++P+++ KQMF+ +++ ++L +ILKAV+IG  +   V P L  L+ LA
Sbjct  61   FAPKALKLDIKKIDPFSHAKQMFSGQNILNLLLSILKAVAIGATLYTQVKPALGTLILLA  120

Query  169  YGDLTTFWKGVENVLKSVARTTLSALLALGVLDFGLQKYYFLKQQRMSHEDIRNEFKNSE  228
             +DL+T+  ++ ++++ V R  L+ LL ++++DF++QKY+  K+ RMSHEDI++E+K+SE
Sbjct  121  NSDLATYLHALIELFQHVLRVILGLLLVIALIDFAMQKYFHAKKLRMSHEDIKKEYKQSE  180

Query  229  GDPHMKGHRKSVAQEILNEPASPRVKPKVEDADLLLVNPTHYAVALFYRPGKTPLPRILL  288
            GDPH+KGHR+ +A+EILN+ +S+  KP VE+AD+LLVNPTHYAVAL+YRPG TPLP I  
Sbjct  181  GDPHVKGHRRQLAHEILNQEPSAAPKP-VEEADMLLVNPTHYAVALYYRPGETPLPMIHC  239

Query  289  KGEDDQAKALIARAHQAGVPVIRFIWLARTLYRIPEGHYIPRDTLQPVAQVYKVLRQLE  347
            KGED++A ALIA+A +AG+PV++ IWLARTLY++  G YIPR TL +V+++YKV+RQLE
Sbjct  240  KGEDEDALALIAQAKKAGIPVVQSIWLARTLYKVNVGKYIPRPTLLAVGHIYKVVRQLE  298

7) Dd1591_1882 in NC_012912


> AF232004|21|G20|11276519|AAG33887.1|Pseudomonas_syringae_pv._tomato_DC3000|+|20927..21862|hrcU|-|HrcU
Length=311

 Score =  255 bits (951),  Expect = 3e-69, Method: Compositional matrix adjust.
 Identities = 151/299 (51%), Positives = 236/299 (79%), Gaps = 1/299 (0%)

Query  49   MSKLQALMQLPLSRISDPFGHAADEVFSEalallaTFCLLTISVALLMRIVGGWIQYGPL  108
            M++LQAL+ L +  I  PF  A + + SE+L+++ +F L ++++A+LMR++++W+Q G L
Sbjct  1    MNRLQALLALTFKGIERPFMSAVELIASEGLSVVLSFTLCSVGLAMLMRLISSWVQIGFL  60

Query  109  FAVEALKLDFNRLNPINQIKQMFTMRKLTDMLTNLLKATTIGLVFWLVVTPQLEWLVELA  168
            FA  ALKLD+++++P+++ KQMF+ +++ ++L ++LKA +IG  +   V P L  L+ LA
Sbjct  61   FAPKALKLDIKKIDPFSHAKQMFSGQNILNLLLSILKAVAIGATLYTQVKPALGTLILLA  120

Query  169  YGDLTAFWKGVENVLKSVSRTTLSALLALGVFDFGLQKYYFLKQQRMSHEDIRNEYKNSE  228
             +DL+++  ++ ++++ V R  L+ LL ++++DF++QKY+  K+ RMSHEDI++EYK+SE
Sbjct  121  NSDLATYLHALIELFQHVLRVILGLLLVIALIDFAMQKYFHAKKLRMSHEDIKKEYKQSE  180

Query  229  GDPHMKGHRKSVAQEILNEPASPRVKPKVEDADLLLVNPTHYAVALFYRPGKTPLPRILL  288
            GDPH+KGHR+ +A+EILN+ +S+  KP VE+AD+LLVNPTHYAVAL+YRPG TPLP I  
Sbjct  181  GDPHVKGHRRQLAHEILNQEPSAAPKP-VEEADMLLVNPTHYAVALYYRPGETPLPMIHC  239

Query  289  KGEDDHARALIARAHQAGVPVIRFIWLARTLYRVPEGHYIPRDTLQPVAQVYKVLRQLE  347
            KGED++A ALIA+A +AG+PV++ IWLARTLY+V  G YIPR TL +V+++YKV+RQLE
Sbjct  240  KGEDEDALALIAQAKKAGIPVVQSIWLARTLYKVNVGKYIPRPTLLAVGHIYKVVRQLE  298

8) hrcU in NC_013971


> AF232004|21|G20|11276519|AAG33887.1|Pseudomonas_syringae_pv._tomato_DC3000|+|20927..21862|hrcU|-|HrcU
Length=311

 Score =  251 bits (937),  Expect = 4e-68, Method: Compositional matrix adjust.
 Identities = 165/314 (53%), Positives = 242/314 (78%), Gaps = 6/314 (1%)

Query  49   MQKLQALMMLPLARIGQPFELALSEVVSSAIILVATF--CGLTVAIAALLRIIGGWIQYG  106
            M++LQAL+ L +  I +PF  A+  + S ++ +V +F  C  +V++A L+R+I++W+Q G
Sbjct  1    MNRLQALLALTFKGIERPFMSAVELIASEGLSVVLSFTLC--SVGLAMLMRLISSWVQIG  58

Query  107  PLFAPEALQPDFNRLNPINQFKQMFSVKKLSEMLNSIVKAVAICTIFYLVLTPDLESLSR  166
             LFAP AL+ D+++++P+++ KQMFS +++ ++L SI+KAVAI + +Y  + P L +L  
Sbjct  59   FLFAPKALKLDIKKIDPFSHAKQMFSGQNILNLLLSILKAVAIGATLYTQVKPALGTLIL  118

Query  167  LAYGDLDSFWPAVETLLIHVSRQtlltllvltllDFGLQKYFFIKQQRMSHQDIRDEHKQ  226
            LA +DL ++  A+  L+ HV R  L  LLV++L+DF++QKYF  K+ RMSH+DI+ E KQ
Sbjct  119  LANSDLATYLHALIELFQHVLRVILGLLLVIALIDFAMQKYFHAKKLRMSHEDIKKEYKQ  178

Query  227  SEGDPHMKGHRHALAHELLNQPATAVKSKPVEEADLLLVNPTHYAVALYYRPELTPLPRI  286
            SEGDPH+KGHR+ LAHE+LNQ ++A  +KPVEEAD+LLVNPTHYAVALYYRP  TPLP I
Sbjct  179  SEGDPHVKGHRRQLAHEILNQEPSAA-PKPVEEADMLLVNPTHYAVALYYRPGETPLPMI  237

Query  287  ICKGEDQQAKELIARAQQANIPVIRFIWLARTLYRSQEGQLIPRHTLQAVAQVYRVLRQL  346
             CKGED++A  LIA+A++A IPV++ IWLARTLY+ + G+ IPR TL AV+++Y+V+RQL
Sbjct  238  HCKGEDEDALALIAQAKKAGIPVVQSIWLARTLYKVNVGKYIPRPTLLAVGHIYKVVRQL  297

Query  347  EDQITDEVIELEAE  360
            E+ ITDEVI ++ +
Sbjct  298  EE-ITDEVIRIDDD  310

9) hrcU in NC_013961


> AF232004|21|G20|11276519|AAG33887.1|Pseudomonas_syringae_pv._tomato_DC3000|+|20927..21862|hrcU|-|HrcU
Length=311

 Score =  251 bits (937),  Expect = 4e-68, Method: Compositional matrix adjust.
 Identities = 165/314 (53%), Positives = 242/314 (78%), Gaps = 6/314 (1%)

Query  49   MQKLQALMMLPLARIGQPFELALSEVVSSAIILVATF--CGLTVAIAALLRIIGGWIQYG  106
            M++LQAL+ L +  I +PF  A+  + S ++ +V +F  C  +V++A L+R+I++W+Q G
Sbjct  1    MNRLQALLALTFKGIERPFMSAVELIASEGLSVVLSFTLC--SVGLAMLMRLISSWVQIG  58

Query  107  PLFAPEALQPDFNRLNPINQFKQMFSVKKLSEMLNSIVKAVAICTIFYLVLTPDLESLSR  166
             LFAP AL+ D+++++P+++ KQMFS +++ ++L SI+KAVAI + +Y  + P L +L  
Sbjct  59   FLFAPKALKLDIKKIDPFSHAKQMFSGQNILNLLLSILKAVAIGATLYTQVKPALGTLIL  118

Query  167  LAYGDLDSFWPAVETLLIHVSRQtlltllvltllDFGLQKYFFIKQQRMSHQDIRDEHKQ  226
            LA +DL ++  A+  L+ HV R  L  LLV++L+DF++QKYF  K+ RMSH+DI+ E KQ
Sbjct  119  LANSDLATYLHALIELFQHVLRVILGLLLVIALIDFAMQKYFHAKKLRMSHEDIKKEYKQ  178

Query  227  SEGDPHMKGHRHALAHELLNQPATAVKSKPVEEADLLLVNPTHYAVALYYRPELTPLPRI  286
            SEGDPH+KGHR+ LAHE+LNQ ++A  +KPVEEAD+LLVNPTHYAVALYYRP  TPLP I
Sbjct  179  SEGDPHVKGHRRQLAHEILNQEPSAA-PKPVEEADMLLVNPTHYAVALYYRPGETPLPMI  237

Query  287  ICKGEDQQAKELIARAQQANIPVIRFIWLARTLYRSQEGQLIPRHTLQAVAQVYRVLRQL  346
             CKGED++A  LIA+A++A IPV++ IWLARTLY+ + G+ IPR TL AV+++Y+V+RQL
Sbjct  238  HCKGEDEDALALIAQAKKAGIPVVQSIWLARTLYKVNVGKYIPRPTLLAVGHIYKVVRQL  297

Query  347  EDQITDEVIELEAE  360
            E+ ITDEVI ++ +
Sbjct  298  EE-ITDEVIRIDDD  310

10) Dd586_1879 in NC_013592


> AF232004|21|G20|11276519|AAG33887.1|Pseudomonas_syringae_pv._tomato_DC3000|+|20927..21862|hrcU|-|HrcU
Length=311

 Score =  247 bits (924),  Expect = 4e-67, Method: Compositional matrix adjust.
 Identities = 152/311 (49%), Positives = 242/311 (78%), Gaps = 3/311 (0%)

Query  49   MSKLQALMQLPLSRLSDPFVHAADEVFSEALSLLSTFCLLTISVALLMRIVGGWIQYGPL  108
            M++LQAL+ L +  +  PF+ A + + SE+LS++ +F L ++++A+LMR++++W+Q G L
Sbjct  1    MNRLQALLALTFKGIERPFMSAVELIASEGLSVVLSFTLCSVGLAMLMRLISSWVQIGFL  60

Query  109  FAVEALKIDFNRLNPVNQIKQMFTMRKLTDMLTSILKATTIGLVFWLVVIPQLEWLVELA  168
            FA  ALK+D+++++P ++ KQMF+ +++ ++L SILKA +IG  +   V P L  L+ LA
Sbjct  61   FAPKALKLDIKKIDPFSHAKQMFSGQNILNLLLSILKAVAIGATLYTQVKPALGTLILLA  120

Query  169  YGDLTAFWKGVESVLKSVARttlssllalaILDFGLQKYYFLKQQRMSHEDIRNEFKNSE  228
             +DL+++  ++  +++ V R  L+ LL +A++DF++QKY+  K+ RMSHEDI++E+K+SE
Sbjct  121  NSDLATYLHALIELFQHVLRVILGLLLVIALIDFAMQKYFHAKKLRMSHEDIKKEYKQSE  180

Query  229  GDPHMKGHRKSVAQEILNEPASPRAKPNIEDADLLLVNPTHYAVALFYRPGKTPLPRILL  288
            GDPH+KGHR+ +A+EILN+ +S+ +KP +E+AD+LLVNPTHYAVAL+YRPG TPLP I  
Sbjct  181  GDPHVKGHRRQLAHEILNQEPSAAPKP-VEEADMLLVNPTHYAVALYYRPGETPLPMIHC  239

Query  289  KGEDEQAKALIARAQHANVPVIRFIWLARTLYRVPEGHYIPRHTLQSVAQVYRVLRQLDN  348
            KGEDE+A ALIA+A+ A +PV++ IWLARTLY+V  G YIPR TL +V+++Y+V+RQL++
Sbjct  240  KGEDEDALALIAQAKKAGIPVVQSIWLARTLYKVNVGKYIPRPTLLAVGHIYKVVRQLEE  299

Query  349  DLSQQEIIELD  359
                +E+I +D
Sbjct  300  --ITDEVIRID  308

11) hrcU in NC_017445


> AF232004|21|G20|11276519|AAG33887.1|Pseudomonas_syringae_pv._tomato_DC3000|+|20927..21862|hrcU|-|HrcU
Length=311

 Score =  246 bits (918),  Expect = 1e-66, Method: Compositional matrix adjust.
 Identities = 168/314 (54%), Positives = 241/314 (77%), Gaps = 6/314 (1%)

Query  54   MQKLQALMMLPLARIGQPFelalsevvssalvlvaTF--CGLTVAIAALLRIIGGWIQYG  111
            M++LQAL+ L +  I +PF  A+  + S +L +V +F  C  +V++A L+R+I++W+Q G
Sbjct  1    MNRLQALLALTFKGIERPFMSAVELIASEGLSVVLSFTLC--SVGLAMLMRLISSWVQIG  58

Query  112  PLFAPEALKPDFNRLNPINQFKQMFSVKKLSEMLNSIVKAVAICTIFYLVLTPDLESLAR  171
             LFAP ALK D+++++P+++ KQMFS +++ ++L SI+KAVAI + +Y  + P L +L  
Sbjct  59   FLFAPKALKLDIKKIDPFSHAKQMFSGQNILNLLLSILKAVAIGATLYTQVKPALGTLIL  118

Query  172  LAYGDLDSFWPAVETLLIHVSRQtlltllvltllDFGLQKYFFIKQQRMSHQDIRDEHKQ  231
            LA +DL ++  A+  L+ HV R  L  LLV++L+DF++QKYF  K+ RMSH+DI+ E KQ
Sbjct  119  LANSDLATYLHALIELFQHVLRVILGLLLVIALIDFAMQKYFHAKKLRMSHEDIKKEYKQ  178

Query  232  SEGDPHMKGHRHALAHELLNQPVAAVKSKPVEEADLLLVNPTHYAVALYYRPELTPLPRI  291
            SEGDPH+KGHR+ LAHE+LNQ  +A  +KPVEEAD+LLVNPTHYAVALYYRP  TPLP I
Sbjct  179  SEGDPHVKGHRRQLAHEILNQEPSAA-PKPVEEADMLLVNPTHYAVALYYRPGETPLPMI  237

Query  292  ICKGEDGEAKALIARAQQANIPVIRFIWLARTLYRSQEGQLIPRHTLQAVAQVYRVLRQL  351
             CKGED +A ALIA+A++A IPV++ IWLARTLY+ + G+ IPR TL AV+++Y+V+RQL
Sbjct  238  HCKGEDEDALALIAQAKKAGIPVVQSIWLARTLYKVNVGKYIPRPTLLAVGHIYKVVRQL  297

Query  352  EDQITDEVIELEAE  365
            E+ ITDEVI ++ +
Sbjct  298  EE-ITDEVIRIDDD  310

12) Ser39006_2922 in NC_022268


> AF232004|21|G20|11276519|AAG33887.1|Pseudomonas_syringae_pv._tomato_DC3000|+|20927..21862|hrcU|-|HrcU
Length=311

 Score =  242 bits (903),  Expect = 2e-65, Method: Compositional matrix adjust.
 Identities = 144/292 (50%), Positives = 224/292 (77%), Gaps = 1/292 (0%)

Query  49   MGKLQSLMQLPLARLSDPFGHAAEEIFSEALSLLATFCLLTISVAVLLRLVGGWLQYGPL  108
            M +LQ+L+ L +  +  PF  A E I SE+LS++ +F L ++++A+L+RL+++W+Q G L
Sbjct  1    MNRLQALLALTFKGIERPFMSAVELIASEGLSVVLSFTLCSVGLAMLMRLISSWVQIGFL  60

Query  109  FAPEALRIDLSRLNPINQFKQMFSMRKLTEMLTNILKASTIGTIFYLVIIPDLESLAELS  168
            FAP AL++D+ +++P+++ KQMFS +++ ++L +ILKA +IG+ +Y  + P L +L  L+
Sbjct  61   FAPKALKLDIKKIDPFSHAKQMFSGQNILNLLLSILKAVAIGATLYTQVKPALGTLILLA  120

Query  169  YGDLDGFWHGVAKILHHSarttltallvlsalDFGLQKYFFMKQQRMSHEDLRSEHKDSE  228
             +DL  + H++  +++H  R  L  LLV++ +DF++QKYF  K+ RMSHED++ E K+SE
Sbjct  121  NSDLATYLHALIELFQHVLRVILGLLLVIALIDFAMQKYFHAKKLRMSHEDIKKEYKQSE  180

Query  229  GDPHMKGHRKSLANEILNKPATQRPKGKVEDADLLLVNPTHYAVALFYRPGKTPLPRILC  288
            GDPH+KGHR+ LA+EILN+ ++  PK  VE+AD+LLVNPTHYAVAL+YRPG TPLP I C
Sbjct  181  GDPHVKGHRRQLAHEILNQEPSAAPKP-VEEADMLLVNPTHYAVALYYRPGETPLPMIHC  239

Query  289  KGKDDQAKKLITRAHQADIPVIRFVWLARTLYRIPTGNYIPRDTLQAVAQVY  340
            KG D++A  LI++A +A+IPV++ +WLARTLY++  G+YIPR TL AV+++Y
Sbjct  240  KGEDEDALALIAQAKKAGIPVVQSIWLARTLYKVNVGKYIPRPTLLAVGHIY  291

13) PSEBR_a5379 in NC_015379


> AF232004|21|G20|11276519|AAG33887.1|Pseudomonas_syringae_pv._tomato_DC3000|+|20927..21862|hrcU|-|HrcU
Length=311

 Score =  240 bits (897),  Expect = 6e-65, Method: Compositional matrix adjust.
 Identities = 161/310 (52%), Positives = 246/310 (80%), Gaps = 1/310 (0%)

Query  53   MQALGDMVTFPLHRLDVDFVRAFEETLAHAGGVLLNFTLMTVGLAIVTRLVAGWIQFGFL  112
            M+ L  ++++ +  ++  F+ A E   +++ +V+L+FTL +VGLA++ RL+++W+Q+GFL
Sbjct  1    MNRLQALLALTFKGIERPFMSAVELIASEGLSVVLSFTLCSVGLAMLMRLISSWVQIGFL  60

Query  113  FAPEALQPDPNRLNPMNQAKQMFSGQALINLFMGLVKAVFIGTVIYLVTLPALGSLINLV  172
            FAP AL+ D ++++P ++AKQMFSGQ ++NL+++++KAV IG+ +Y    PALG+LI L 
Sbjct  61   FAPKALKLDIKKIDPFSHAKQMFSGQNILNLLLSILKAVAIGATLYTQVKPALGTLILLA  120

Query  173  NGDLNSYWRGLASLFRHIMHIClgvllvlalldfglQKYFFAKRLRMSeeevrkefkeme  232
            N+DL +Y ++L  LF+H++++ LG+LLV+AL+DF++QKYF AK+LRMS+E+++KE+K+ E
Sbjct  121  NSDLATYLHALIELFQHVLRVILGLLLVIALIDFAMQKYFHAKKLRMSHEDIKKEYKQSE  180

Query  233  GDPHVKMHRRSLARQLVDQPVNKETKPVEDADMLVVNPTHFAVALLYRPEETPLPQLIVK  292
            GDPHVK HRR LA+++++Q  +   KPVE+ADML+VNPTH+AVAL YRP ETPLP +  K
Sbjct  181  GDPHVKGHRRQLAHEILNQEPSAAPKPVEEADMLLVNPTHYAVALYYRPGETPLPMIHCK  240

Query  293  GVDAEARALIERAKVARVPVIQCIWLARTIYREDVGAYIPRETLQAVAHIYRVLRELDDE  352
            G D +A ALI +AK A +PV+Q IWLART+Y+ +VG YIPR TL AV+HIY+V+R+L +E
Sbjct  241  GEDEDALALIAQAKKAGIPVVQSIWLARTLYKVNVGKYIPRPTLLAVGHIYKVVRQL-EE  299

Query  353  AKGEVIEIPE  362
              +EVI I +
Sbjct  300  ITDEVIRIDD  309

14) rscU in NC_012660


> AF232004|21|G20|11276519|AAG33887.1|Pseudomonas_syringae_pv._tomato_DC3000|+|20927..21862|hrcU|-|HrcU
Length=311

 Score =  239 bits (893),  Expect = 1e-64, Method: Compositional matrix adjust.
 Identities = 158/299 (53%), Positives = 236/299 (79%), Gaps = 0/299 (0%)

Query  52   LQRFQQLMLLPLSRLTQPFTRALEEVLFEGMTVFFSFALLMVGVAITTKLISSWMQFGLL  111
            ++R+Q L+ L +  + +PF  A+E +  EG++V +SF+L  VG+A+  +LISSW+Q+G+L
Sbjct  1    MNRLQALLALTFKGIERPFMSAVELIASEGLSVVLSFTLCSVGLAMLMRLISSWVQIGFL  60

Query  112  FAPETLKLDFNRLNPISQVKQMFSAQQLMNLLMSIAKACLIASILYVVIWPSLGTLINLA  171
            FAP +LKLD+++++P+S+ KQMFS+Q+++NLL+SI KA  I++ LY  + P+LGTLI LA
Sbjct  61   FAPKALKLDIKKIDPFSHAKQMFSGQNILNLLLSILKAVAIGATLYTQVKPALGTLILLA  120

Query  172  TSDLQSYILALIALFRhllhvclgmllvlalIDLIMVRHFFAKRMRMTQVEVVKEYKDME  231
             SDL +Y+ ALI LF+H+L+V LG+LLV+ALID+ M + F AK++RM++ ++ KEYK+ E
Sbjct  121  NSDLATYLHALIELFQHVLRVILGLLLVIALIDFAMQKYFHAKKLRMSHEDIKKEYKQSE  180

Query  232  GDPHVKGQRRSLAYQLAQeepkvklpkleeSDMLVVNPTHFAVALYYRPGKTPLPMLVSK  291
            GDPHVKG+RR LA ++ ++EP      +EE+DML+VNPTH+AVALYYRPG TPLPM+  K
Sbjct  181  GDPHVKGHRRQLAHEILNQEPSAAPKPVEEADMLLVNPTHYAVALYYRPGETPLPMIHCK  240

Query  292  GTDDEARTLIRRAKAADVPVIQCVWLARTLYTKKLGASIPRETLRAVALIYRTLRELDD  350
            G D++A +LI +AK A++PV+Q +WLARTLY  ++G  IPR TL AV+ IY+ +R+L++
Sbjct  241  GEDEDALALIAQAKKAGIPVVQSIWLARTLYKVNVGKYIPRPTLLAVGHIYKVVRQLEE  299

15) hrcU in NC_017390


> AF232004|21|G20|11276519|AAG33887.1|Pseudomonas_syringae_pv._tomato_DC3000|+|20927..21862|hrcU|-|HrcU
Length=311

 Score =  237 bits (884),  Expect = 7e-64, Method: Compositional matrix adjust.
 Identities = 163/314 (52%), Positives = 241/314 (77%), Gaps = 6/314 (1%)

Query  49   MQKLQALMRLPLARIGQPFelalsevvssalvlvaTF--CGLTVAIAALLRIIGGWIQYG  106
            M++LQAL+ L +  I +PF  A+  + S +L +V +F  C  +V++A L+R+I++W+Q G
Sbjct  1    MNRLQALLALTFKGIERPFMSAVELIASEGLSVVLSFTLC--SVGLAMLMRLISSWVQIG  58

Query  107  PLFAPEALKPDFNRLNPINQFKQMFSVKKLSEMFNNIVKAAAISTIFYLVLTPDLESLAR  166
             LFAP ALK D+++++P+++ KQMFS +++ +++ +I+KA AI++ +Y  + P L +L  
Sbjct  59   FLFAPKALKLDIKKIDPFSHAKQMFSGQNILNLLLSILKAVAIGATLYTQVKPALGTLIL  118

Query  167  LAYGDLDSFWPAVEvlltrvsrqtlltllvltllDFGLQKYFFIKQQRMSHQDIRDEHKQ  226
            LA +DL ++  A+  L+ +V R  L  LLV++L+DF++QKYF  K+ RMSH+DI+ E KQ
Sbjct  119  LANSDLATYLHALIELFQHVLRVILGLLLVIALIDFAMQKYFHAKKLRMSHEDIKKEYKQ  178

Query  227  SEGDPHMKGHRHALAHELLNQPAAAVKSKPVEEADLLLVNPTHYAVALYYRPELTPLPRI  286
            SEGDPH+KGHR+ LAHE+LNQ ++A  +KPVEEAD+LLVNPTHYAVALYYRP  TPLP I
Sbjct  179  SEGDPHVKGHRRQLAHEILNQEPSAA-PKPVEEADMLLVNPTHYAVALYYRPGETPLPMI  237

Query  287  ICKGEDGEAKALIARAQQANIPVIRFIWLARTLYRSQEGQLIPRHTLQAVAQVYRVLRQL  346
             CKGED +A ALIA+A++A IPV++ IWLARTLY+ + G+ IPR TL AV+++Y+V+RQL
Sbjct  238  HCKGEDEDALALIAQAKKAGIPVVQSIWLARTLYKVNVGKYIPRPTLLAVGHIYKVVRQL  297

Query  347  EGQINDEVIELEAE  360
            E +I DEVI ++ +
Sbjct  298  E-EITDEVIRIDDD  310

16) hrcU in NC_012214


> AF232004|21|G20|11276519|AAG33887.1|Pseudomonas_syringae_pv._tomato_DC3000|+|20927..21862|hrcU|-|HrcU
Length=311

 Score =  237 bits (884),  Expect = 7e-64, Method: Compositional matrix adjust.
 Identities = 163/314 (52%), Positives = 241/314 (77%), Gaps = 6/314 (1%)

Query  49   MQKLQALMRLPLARIGQPFelalsevvssalvlvaTF--CGLTVAIAALLRIIGGWIQYG  106
            M++LQAL+ L +  I +PF  A+  + S +L +V +F  C  +V++A L+R+I++W+Q G
Sbjct  1    MNRLQALLALTFKGIERPFMSAVELIASEGLSVVLSFTLC--SVGLAMLMRLISSWVQIG  58

Query  107  PLFAPEALKPDFNRLNPINQFKQMFSVKKLSEMFNNIVKAAAISTIFYLVLTPDLESLAR  166
             LFAP ALK D+++++P+++ KQMFS +++ +++ +I+KA AI++ +Y  + P L +L  
Sbjct  59   FLFAPKALKLDIKKIDPFSHAKQMFSGQNILNLLLSILKAVAIGATLYTQVKPALGTLIL  118

Query  167  LAYGDLDSFWPAVEvlltrvsrqtlltllvltllDFGLQKYFFIKQQRMSHQDIRDEHKQ  226
            LA +DL ++  A+  L+ +V R  L  LLV++L+DF++QKYF  K+ RMSH+DI+ E KQ
Sbjct  119  LANSDLATYLHALIELFQHVLRVILGLLLVIALIDFAMQKYFHAKKLRMSHEDIKKEYKQ  178

Query  227  SEGDPHMKGHRHALAHELLNQPAAAVKSKPVEEADLLLVNPTHYAVALYYRPELTPLPRI  286
            SEGDPH+KGHR+ LAHE+LNQ ++A  +KPVEEAD+LLVNPTHYAVALYYRP  TPLP I
Sbjct  179  SEGDPHVKGHRRQLAHEILNQEPSAA-PKPVEEADMLLVNPTHYAVALYYRPGETPLPMI  237

Query  287  ICKGEDGEAKALIARAQQANIPVIRFIWLARTLYRSQEGQLIPRHTLQAVAQVYRVLRQL  346
             CKGED +A ALIA+A++A IPV++ IWLARTLY+ + G+ IPR TL AV+++Y+V+RQL
Sbjct  238  HCKGEDEDALALIAQAKKAGIPVVQSIWLARTLYKVNVGKYIPRPTLLAVGHIYKVVRQL  297

Query  347  EGQINDEVIELEAE  360
            E +I DEVI ++ +
Sbjct  298  E-EITDEVIRIDDD  310

17) hrcU in NC_010694


> AF232004|21|G20|11276519|AAG33887.1|Pseudomonas_syringae_pv._tomato_DC3000|+|20927..21862|hrcU|-|HrcU
Length=311

 Score =  237 bits (884),  Expect = 7e-64, Method: Compositional matrix adjust.
 Identities = 163/314 (52%), Positives = 241/314 (77%), Gaps = 6/314 (1%)

Query  49   MQKLQALMRLPLARIGQPFelalsevvssalvlvaTF--CGLTVAIAALLRIIGGWIQYG  106
            M++LQAL+ L +  I +PF  A+  + S +L +V +F  C  +V++A L+R+I++W+Q G
Sbjct  1    MNRLQALLALTFKGIERPFMSAVELIASEGLSVVLSFTLC--SVGLAMLMRLISSWVQIG  58

Query  107  PLFAPEALKPDFNRLNPINQFKQMFSVKKLSEMFNNIVKAAAISTIFYLVLTPDLESLAR  166
             LFAP ALK D+++++P+++ KQMFS +++ +++ +I+KA AI++ +Y  + P L +L  
Sbjct  59   FLFAPKALKLDIKKIDPFSHAKQMFSGQNILNLLLSILKAVAIGATLYTQVKPALGTLIL  118

Query  167  LAYGDLDSFWPAVEvlltrvsrqtlltllvltllDFGLQKYFFIKQQRMSHQDIRDEHKQ  226
            LA +DL ++  A+  L+ +V R  L  LLV++L+DF++QKYF  K+ RMSH+DI+ E KQ
Sbjct  119  LANSDLATYLHALIELFQHVLRVILGLLLVIALIDFAMQKYFHAKKLRMSHEDIKKEYKQ  178

Query  227  SEGDPHMKGHRHALAHELLNQPAAAVKSKPVEEADLLLVNPTHYAVALYYRPELTPLPRI  286
            SEGDPH+KGHR+ LAHE+LNQ ++A  +KPVEEAD+LLVNPTHYAVALYYRP  TPLP I
Sbjct  179  SEGDPHVKGHRRQLAHEILNQEPSAA-PKPVEEADMLLVNPTHYAVALYYRPGETPLPMI  237

Query  287  ICKGEDGEAKALIARAQQANIPVIRFIWLARTLYRSQEGQLIPRHTLQAVAQVYRVLRQL  346
             CKGED +A ALIA+A++A IPV++ IWLARTLY+ + G+ IPR TL AV+++Y+V+RQL
Sbjct  238  HCKGEDEDALALIAQAKKAGIPVVQSIWLARTLYKVNVGKYIPRPTLLAVGHIYKVVRQL  297

Query  347  EGQINDEVIELEAE  360
            E +I DEVI ++ +
Sbjct  298  E-EITDEVIRIDDD  310

18) Marme_1068 in NC_015276


> AF232004|21|G20|11276519|AAG33887.1|Pseudomonas_syringae_pv._tomato_DC3000|+|20927..21862|hrcU|-|HrcU
Length=311

 Score =  234 bits (872),  Expect = 6e-63, Method: Compositional matrix adjust.
 Identities = 148/316 (47%), Positives = 227/316 (72%), Gaps = 7/316 (2%)

Query  49   VRNLEKLTSIPLSMINQPFQYALQATVVNCLTIAASMVMMALGIAVLFRLLGGWLQFGFL  108
            +  L+ L ++ +  I++PF  A++    + L++  S  + ++G+A+L RL+++W+Q+GFL
Sbjct  1    MNRLQALLALTFKGIERPFMSAVELIASEGLSVVLSFTLCSVGLAMLMRLISSWVQIGFL  60

Query  109  IAPEALKIDFNRLNPFSQLKNMFSGKKLFELFNSFIKAITIGVVMYFILTPILPSLGKLA  168
            +AP ALK+D+++++PFS+ K+MFSG+++++L+ S++KA++IG  +Y  + P L +L  LA
Sbjct  61   FAPKALKLDIKKIDPFSHAKQMFSGQNILNLLLSILKAVAIGATLYTQVKPALGTLILLA  120

Query  169  LTDLDTTWRGIAELFLKVERACVGVLIVIASIDFGMQKYFHFKSLKMSKDDVKQEYKNQE  228
             +DL T  +++ ELF  V R  +G+L+VIA IDF+MQKYFH K L+MS +D+K+EYK+ E
Sbjct  121  NSDLATYLHALIELFQHVLRVILGLLLVIALIDFAMQKYFHAKKLRMSHEDIKKEYKQSE  180

Query  229  GDPHLKGQRKSEAVRLATeepspapsakpeLGEADTLVVNPTHFAVALYYRSEETPLPKI  288
            GDPH+KG+R+  A          +++A   + EAD L+VNPTH+AVALYYR+ ETPLP I
Sbjct  181  GDPHVKGHRRQLA---HEILNQEPSAAPKPVEEADMLLVNPTHYAVALYYRPGETPLPMI  237

Query  289  LTKGQDQDALDLIEQAKEKGIPVIRFIWLARTLYKEQEGHYIPRTTLRYVAKIYQVLGEL  348
              KG+D+DAL LI QAK  GIPV++ IWLARTLYK + G YIPR TL  V+ IY+V+ +L
Sbjct  238  HCKGEDEDALALIAQAKKAGIPVVQSIWLARTLYKVNVGKYIPRPTLLAVGHIYKVVRQL  297

Query  349  DRDTVKMEDGVLRIPD  364
            +     + D V+RI D
Sbjct  298  E----EITDEVIRIDD  309

19) H045_00205 in NC_020209


> AF232004|21|G20|11276519|AAG33887.1|Pseudomonas_syringae_pv._tomato_DC3000|+|20927..21862|hrcU|-|HrcU
Length=311

 Score =  233 bits (867),  Expect = 1e-62, Method: Compositional matrix adjust.
 Identities = 159/299 (54%), Positives = 236/299 (79%), Gaps = 0/299 (0%)

Query  52   LQRFQQLMRLPLSSMAQPFTRALEEVLFEGLTVFFSFALLMVATAILMKLISSWMQFGLL  111
            ++R+Q L+ L + ++ +PF  A+E +  EGL+V +SF+L  V+ A+LM+LISSW+Q+G+L
Sbjct  1    MNRLQALLALTFKGIERPFMSAVELIASEGLSVVLSFTLCSVGLAMLMRLISSWVQIGFL  60

Query  112  FAPETLKLDFNRLNPLKQLKQMFSAQSVMNLLMSIAKALLLGMVVYLVIRPSLGTLINLA  171
            FAP +LKLD+++++P+ + KQMFS+Q+++NLL+SI KA+ +G  +Y  ++P+LGTLI LA
Sbjct  61   FAPKALKLDIKKIDPFSHAKQMFSGQNILNLLLSILKAVAIGATLYTQVKPALGTLILLA  120

Query  172  SSDLQTYILALIAlfryllhaclalllvlalidlvlQKHFFAKRMRMTQVEVVKEYKDME  231
            +SDL TY+ ALI LF+ +L+  L+LLLV+ALID+ +QK F AK++RM++ ++ KEYK+ E
Sbjct  121  NSDLATYLHALIELFQHVLRVILGLLLVIALIDFAMQKYFHAKKLRMSHEDIKKEYKQSE  180

Query  232  GDPHVKGKRRALAQELAQeepkvklpkleeSDMLVVNPTHFAVALYYRPGKTPLPVLVNK  291
            GDPHVKG RR LA+E+ ++EP      +EE+DML+VNPTH+AVALYYRPG TPLP++  K
Sbjct  181  GDPHVKGHRRQLAHEILNQEPSAAPKPVEEADMLLVNPTHYAVALYYRPGETPLPMIHCK  240

Query  292  GTDDEARELIRQAKAAEVPVIQCVWLARTLYTHKLGAGIPRETLQAVALIYRTLRELDD  350
            G D++A  LI QAK A +PV+Q +WLARTLY  ++G  IPR TL AV+ IY+ +R+L++
Sbjct  241  GEDEDALALIAQAKKAGIPVVQSIWLARTLYKVNVGKYIPRPTLLAVGHIYKVVRQLEE  299

20) D781_3935 in NC_020064


> AF232004|21|G20|11276519|AAG33887.1|Pseudomonas_syringae_pv._tomato_DC3000|+|20927..21862|hrcU|-|HrcU
Length=311

 Score =  228 bits (848),  Expect = 4e-61, Method: Compositional matrix adjust.
 Identities = 147/298 (50%), Positives = 227/298 (77%), Gaps = 7/298 (2%)

Query  66   PFGHAMEEVLSDSLLVLALFSAIVCSIAL--LLRVLGGWIQFGPLFSVEALLPKPESLNP  123
            PF  A+E + S++L V+  F+  +CS++L  L+R++++W+Q+G LF+  AL      ++P
Sbjct  18   PFMSAVELIASEGLSVVLSFT--LCSVGLAMLMRLISSWVQIGFLFAPKALKLDIKKIDP  75

Query  124  VNHFKNMFSGRQMAQLLTSIIKAAAIGLVLWLSLAPEMGNLARLAQSTLDGFWHGVLQLF  183
             +H K+MFSG+++ +LL SI+KA AIG  L   + P +G L  LA+S L  + H++++LF
Sbjct  76   FSHAKQMFSGQNILNLLLSILKAVAIGATLYTQVKPALGTLILLANSDLATYLHALIELF  135

Query  184  ISCarrvllvllalSLMDFGVQRFFFLKQQRMSHEDIRNEYKQNEGDPHMKGHRRQVAQD  243
                R +L +LL ++L+DF++Q++F  K+ RMSHEDI++EYKQ+EGDPH+KGHRRQ+A++
Sbjct  136  QHVLRVILGLLLVIALIDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQLAHE  195

Query  244  ILNEEPSAARNVAVEEADVLLVNPTHYAVGLYYRPGETPLPRLVFKAHGDDAHYLVDQAQ  303
            ILN+EPSAA + +VEEAD+LLVNPTHYAV+LYYRPGETPLP +  K++++DA  L+ QA+
Sbjct  196  ILNQEPSAAPK-PVEEADMLLVNPTHYAVALYYRPGETPLPMIHCKGEDEDALALIAQAK  254

Query  304  RAHIPVVRYIWLTRTLYRTTPEGSWIPRETLKAVAQVYRLLRELEDSYLNEVIELEEE  361
            +A IPVV+ IWL+RTLY+    G  IPR TL AV+++Y+++R+LE+   +EVI ++++
Sbjct  255  KAGIPVVQSIWLARTLYKVNV-GKYIPRPTLLAVGHIYKVVRQLEEI-TDEVIRIDDD  310

21) hrcU in NC_004547


> AF232004|21|G20|11276519|AAG33887.1|Pseudomonas_syringae_pv._tomato_DC3000|+|20927..21862|hrcU|-|HrcU
Length=311

 Score =  224 bits (836),  Expect = 4e-60, Method: Compositional matrix adjust.
 Identities = 154/303 (51%), Positives = 229/303 (76%), Gaps = 6/303 (1%)

Query  49   MGKLQTLVQLPLQRLGTPFAQVAKEVFHD--AAVLAGTLCLLSAAIAVLLRIAGGWLQYG  106
            M +LQ+L+ L ++ +  PF      +  +  + VL+ TLC  S ++A+L+R+ ++W+Q G
Sbjct  1    MNRLQALLALTFKGIERPFMSAVELIASEGLSVVLSFTLC--SVGLAMLMRLISSWVQIG  58

Query  107  PLFAPEALKLDLNRLNPINQFKQMFSMRKLVEMLTNILKAVVIGTVFYKvvvpelealve  166
             LFAP ALKLD+++++P+++ KQMFS ++++++L +ILKAV IG+ +Y  V P L +L+ 
Sbjct  59   FLFAPKALKLDIKKIDPFSHAKQMFSGQNILNLLLSILKAVAIGATLYTQVKPALGTLIL  118

Query  167  laYGDLHGFWQGVKalltritrttltallvlsalDFGMQKYFFLKQQRMSHEDLRNEHKD  226
            LA +DL  + +++  L+ ++ R  L  LLV++ +DF+MQKYF  K+ RMSHED+++E K+
Sbjct  119  LANSDLATYLHALIELFQHVLRVILGLLLVIALIDFAMQKYFHAKKLRMSHEDIKKEYKQ  178

Query  227  SEGDPHMKGHRKSLAHELANESAAPRPKPKLEDADMLLVNPTHYAVGLYYRPGKTPLPRI  286
            SEGDPH+KGHR+ LAHE+ N+ +++ PKP +E+ADMLLVNPTHYAV+LYYRPG TPLP I
Sbjct  179  SEGDPHVKGHRRQLAHEILNQEPSAAPKP-VEEADMLLVNPTHYAVALYYRPGETPLPMI  237

Query  287  LFKGENKAAQELIAQAKKAGIPVIRFIWLTRTLYRTTPEGHYIPRETLQAVAQVYRVLRQ  346
              KGE+  A  LIAQAKKAGIPV++ IWL+RTLY+    G YIPR TL AV+++Y+V+RQ
Sbjct  238  HCKGEDEDALALIAQAKKAGIPVVQSIWLARTLYKVNV-GKYIPRPTLLAVGHIYKVVRQ  296

Query  347  LED  349
            LE+
Sbjct  297  LEE  299

22) PC1_2215 in NC_012917


> AF232004|21|G20|11276519|AAG33887.1|Pseudomonas_syringae_pv._tomato_DC3000|+|20927..21862|hrcU|-|HrcU
Length=311

 Score =  214 bits (795),  Expect = 7e-57, Method: Compositional matrix adjust.
 Identities = 148/301 (50%), Positives = 231/301 (77%), Gaps = 2/301 (0%)

Query  49   MGKLQTLVQLPLQRLDAPFAQVAKEVFHDAAVLAGTlcllaaaiavllRIVGGWIQYGPL  108
            M +LQ+L+ L ++ ++ PF      +  ++  +  ++ L + ++A+L+R++++W+Q G L
Sbjct  1    MNRLQALLALTFKGIERPFMSAVELIASEGLSVVLSFTLCSVGLAMLMRLISSWVQIGFL  60

Query  109  FAPEALKLDLNRLNPINQFKQMFSMRKLVEMLTNILKAVVIGTVFYKvvvpelealvela  168
            FAP ALKLD+++++P+++ KQMFS ++++++L +ILKAV IG+ +Y  V P L +L+ LA
Sbjct  61   FAPKALKLDIKKIDPFSHAKQMFSGQNILNLLLSILKAVAIGATLYTQVKPALGTLILLA  120

Query  169  YGDLHGFWQGVKalltriarttltallvlsalDFGLQKYFFLKQQRMSHEDLRNEHKDSE  228
             +DL  + +++  L+ ++ R  L  LLV++ +DF++QKYF  K+ RMSHED+++E K+SE
Sbjct  121  NSDLATYLHALIELFQHVLRVILGLLLVIALIDFAMQKYFHAKKLRMSHEDIKKEYKQSE  180

Query  229  GDPHMKGHRKSLAHELMNEPAAPRPKAKVEDADMLLVNPTHYAVGLYYRPGKTPLPRILF  288
            GDPH+KGHR+ LAHE++N+ +++ PK+ VE+ADMLLVNPTHYAV+LYYRPG TPLP I  
Sbjct  181  GDPHVKGHRRQLAHEILNQEPSAAPKP-VEEADMLLVNPTHYAVALYYRPGETPLPMIHC  239

Query  289  KGEDSAAQELIAQAKKADIPVIRFIWLTRTLYRTTPEGQYIPRETLQAVAQVYRVLRQLE  348
            KGED  A  LIAQAKKA+IPV++ IWL+RTLY+    G+YIPR TL AV+++Y+V+RQLE
Sbjct  240  KGEDEDALALIAQAKKAGIPVVQSIWLARTLYKVNV-GKYIPRPTLLAVGHIYKVVRQLE  298

Query  349  D  349
            +
Sbjct  299  E  299

23) PCC21_022940 in NC_018525


> AF232004|21|G20|11276519|AAG33887.1|Pseudomonas_syringae_pv._tomato_DC3000|+|20927..21862|hrcU|-|HrcU
Length=311

 Score =  208 bits (774),  Expect = 3e-55, Method: Compositional matrix adjust.
 Identities = 150/303 (50%), Positives = 228/303 (76%), Gaps = 6/303 (1%)

Query  49   MGKLQTLVQLPLQRLDAPFAQVAKEVFHD--AAVLAGTLCllaaaiavllrvvGGWLQYG  106
            M +LQ+L+ L ++ ++ PF      +  +  + VL+ TLC ++ A+ + L   ++W+Q G
Sbjct  1    MNRLQALLALTFKGIERPFMSAVELIASEGLSVVLSFTLCSVGLAMLMRLI--SSWVQIG  58

Query  107  PLFAPEALNLDLNRLNPINQFKQMFSMRKLVEMLTNILKAVVIGTVFYKvvvpelealve  166
             LFAP AL+LD+++++P+++ KQMFS ++++++L +ILKAV IG+ +Y  V P L +L+ 
Sbjct  59   FLFAPKALKLDIKKIDPFSHAKQMFSGQNILNLLLSILKAVAIGATLYTQVKPALGTLIL  118

Query  167  laYGDLHGFWQGVKallmrvarttltallvlsalDFGLQKYFFLKQQRMSHEDLRNEHKD  226
            LA +DL  + +++  L+ +V R  L  LLV++ +DF++QKYF  K+ RMSHED+++E K+
Sbjct  119  LANSDLATYLHALIELFQHVLRVILGLLLVIALIDFAMQKYFHAKKLRMSHEDIKKEYKQ  178

Query  227  SEGDPHMKGHRKSLAHELMNEPAAPRPKAKVEDADMLLVNPTHYAVGLYYRPGKTPLPRI  286
            SEGDPH+KGHR+ LAHE++N+ +++ PK+ VE+ADMLLVNPTHYAV+LYYRPG TPLP I
Sbjct  179  SEGDPHVKGHRRQLAHEILNQEPSAAPKP-VEEADMLLVNPTHYAVALYYRPGETPLPMI  237

Query  287  LFKGEDRAAQELIAQAQKADIPVIRFIWLTRTLYRTTPEGHYIPRETLQAVAQVYRVLRQ  346
              KGED  A  LIAQA+KA+IPV++ IWL+RTLY+    G YIPR TL AV+++Y+V+RQ
Sbjct  238  HCKGEDEDALALIAQAKKAGIPVVQSIWLARTLYKVNV-GKYIPRPTLLAVGHIYKVVRQ  296

Query  347  LED  349
            LE+
Sbjct  297  LEE  299

24) rscU in NC_017911


> AF232004|21|G20|11276519|AAG33887.1|Pseudomonas_syringae_pv._tomato_DC3000|+|20927..21862|hrcU|-|HrcU
Length=311

 Score =  196 bits (726),  Expect = 2e-51, Method: Compositional matrix adjust.
 Identities = 157/299 (53%), Positives = 236/299 (79%), Gaps = 0/299 (0%)

Query  52   LQRFQQLMVFPMSRLSQPFvrvleevlveglvMFFSFSLLMAGLAIAAKLIGSWMQFGLL  111
            ++R+Q L+ +    + +PF+  +E +  EGL + +SF+L   GLA+  +LI+SW+Q+G+L
Sbjct  1    MNRLQALLALTFKGIERPFMSAVELIASEGLSVVLSFTLCSVGLAMLMRLISSWVQIGFL  60

Query  112  FAPQTLKLDFNRLNPISQIKQMFSAQSLMNLLMSIAKAFLLGLIVYVVVWPSLGALINLA  171
            FAP++LKLD+++++P+S+ KQMFS+Q+++NLL+SI KA  +G  +Y  V P+LG+LI LA
Sbjct  61   FAPKALKLDIKKIDPFSHAKQMFSGQNILNLLLSILKAVAIGATLYTQVKPALGTLILLA  120

Query  172  NSDLQSYllalialfrhllhaclglllvlalidltlQKHFFAKRMRMTQVEVVKEYKDME  231
            NSDL +YL ALI LF+H+L+  LGLLLV+ALID+++QK F AK++RM++ ++ KEYK+ E
Sbjct  121  NSDLATYLHALIELFQHVLRVILGLLLVIALIDFAMQKYFHAKKLRMSHEDIKKEYKQSE  180

Query  232  GDPHVKGqrrqlaqqlaqeepkvklpkleeADMLVVNPTHFAVALYYRPGKTPLPLLISK  291
            GDPHVKG+RRQLA+++ ++EP      +EEADML+VNPTH+AVALYYRPG TPLP++  K
Sbjct  181  GDPHVKGHRRQLAHEILNQEPSAAPKPVEEADMLLVNPTHYAVALYYRPGETPLPMIHCK  240

Query  292  GTDDEARKLIARAKAAEVPVIQCVWLARTIYTKKLGASIPREALQAVALIYRTLRELDD  350
            G D++A  LIA+AK A +PV+Q +WLART+Y  ++G  IPR +L AV+ IY+ +R+L++
Sbjct  241  GEDEDALALIAQAKKAGIPVVQSIWLARTLYKVNVGKYIPRPTLLAVGHIYKVVRQLEE  299