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Homologs of SAS0395 gene of NC_002953_P1

30

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) SAS0395
( YP_042521.1 )

restriction and modification system specificity protein

NC_002953
(Staphylococcus aureus MSSA476)

0.0

100

2) hsdS
( NP_645210.1 )

specificity determinant HsdS

NC_003923
(Staphylococcus aureus MW2)

0.0

100

3) hsdS
( YP_186689.1 )

type I restriction-modification enzyme, S subunit, EcoA family protein

NC_002951
(Staphylococcus aureus COL)

8e-102

64

4) hsdS
( YP_494442.1 )

type I restriction-modification enzyme, S subunit

NC_007793
(Staphylococcus aureus FPR3757)

8e-102

64

5) BN843_18130
( YP_007868878.1 )

Type I restriction-modification system,specificity subunit S

NC_021059
(Staphylococcus aureus M1)

8e-102

64

6) hsdS
( YP_001332733.1 )

type I restriction modification system, site specificity determination subunit

NC_009641
(Staphylococcus aureus Newman)

8e-102

64

7) SAT0131_01927
( YP_005753066.1 )

Type I restriction modification system, site specificity determination subunit

NC_017347
(Staphylococcus aureus T0131)

8e-102

64

8) hsdS2
( YP_001575681.1 )

type I site-specific deoxyribonuclease specificity subunit

NC_010079
(Staphylococcus aureus TCH1516)

8e-102

64

9) SATW20_18040
( YP_005731792.1 )

type I restriction-modification system specificity protein

NC_017331
(Staphylococcus aureus TW20)

8e-102

64

10) SAOUHSC_01932
( YP_500433.1 )

type I restriction-modification system subunit S

NC_007795
(Staphylococcus aureus NCTC 8325)

2e-101

64

11) SAVC_08270
( YP_005291247.1 )

type I restriction-modification enzyme, S subunit, EcoA family protein

NC_016912
(Staphylococcus aureus VC40)

2e-101

64

12) SAI6T6_1003130
( YP_007582923.1 )

Type I restriction modification DNA specificity domain protein

NC_020536
(Staphylococcus aureus ST228)

1e-96

63

13) SAI5S5_1003120
( YP_007620637.1 )

Type I restriction modification DNA specificity domain protein

NC_020566
(Staphylococcus aureus ST228)

1e-96

63

14) SAI8T7_1003130
( YP_007622624.1 )

Type I restriction modification DNA specificity domain protein

NC_020568
(Staphylococcus aureus ST228)

1e-96

63

15) SAI1T1_2003130
( YP_007576936.1 )

Type I restriction modification DNA specificity domain protein

NC_020529
(Staphylococcus aureus ST228 (isolate=10388))

1e-96

63

16) SAI2T2_1003130
( YP_007618651.1 )

Type I restriction modification DNA specificity domain protein

NC_020564
(Staphylococcus aureus ST228 (isolate=10497))

1e-96

63

17) SAI3T3_1003130
( YP_007578944.1 )

Type I restriction modification DNA specificity domain protein

NC_020532
(Staphylococcus aureus ST228 (isolate=15532))

1e-96

63

18) SAI4T8_1003130
( YP_007580908.1 )

Type I restriction modification DNA specificity domain protein

NC_020533
(Staphylococcus aureus ST228 (isolate=16035))

1e-96

63

19) SAI7S6_1003130
( YP_007584887.1 )

Type I restriction modification DNA specificity domain protein

NC_020537
(Staphylococcus aureus ST228 (isolate=18412))

1e-96

63

20) SAS1731
( YP_043847.1 )

restriction modification DNA specificity protein

NC_002953
(Staphylococcus aureus MSSA476)

2e-95

63

21) hsdS
( NP_646567.1 )

specificity determinant HsdS

NC_003923
(Staphylococcus aureus MW2)

2e-95

63

22) SA2981_1762
( YP_005742511.1 )

Type I restriction-modification system, specificity subunit S

NC_017340
(Staphylococcus aureus 04-02981)

8e-94

62

23) ECTR2_1640
( YP_005750370.1 )

type I restriction modification DNA specificity domain protein

NC_017343
(Staphylococcus aureus ECT-R 2)

8e-94

62

24) hsdS
( YP_003282709.1 )

type I restriction-modification enzyme, S subunit

NC_013450
(Staphylococcus aureus ED98)

8e-94

62

25) SaurJH1_1894
( YP_001317019.1 )

restriction modification system DNA specificity subunit

NC_009632
(Staphylococcus aureus JH1)

8e-94

62

26) SaurJH9_1859
( YP_001247222.1 )

restriction modification system DNA specificity subunit

NC_009487
(Staphylococcus aureus JH9)

8e-94

62

27) SA1625
( NP_374914.1 )

specificity determinant HsdS

NC_002745
(Staphylococcus aureus N315)

8e-94

62

28) SAHV_1792
( YP_001442382.1 )

specificity determinant HsdS

NC_009782
(Staphylococcus aureus Mu3)

2e-93

62

29) SAV1807
( NP_372331.1 )

specificity determinant HsdS

NC_002758
(Staphylococcus aureus Mu50)

2e-93

62

30) hsdS
( YP_008168957.1 )

Type I restriction enzyme S protein

NC_021670
(Staphylococcus aureus Bmb9393)

2e-64

55

• Sequence Alignments

1) SAS0395 in NC_002953


> NC_002953_P1|20|G20|49485300|YP_042521.1|Staphylococcus_aureus_subsp._aureus_MSSA476|+|16941..18200|-|SAS0395|restriction 
and modification system specificity protein
Length=419

 Score =  638 bits (2412),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 419/419 (100%), Positives = 419/419 (100%), Gaps = 0/419 (0%)

Query  1    MSNTQKKNVPELRFPGFEGEWEEKKLGDLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60
            MSNTQKKNVPELRFPGFEGEWEEKKLGDLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR
Sbjct  1    MSNTQKKNVPELRFPGFEGEWEEKKLGDLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60

Query  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVEIHANLNQHVCI  120
            NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVEIHANLNQHVCI
Sbjct  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVEIHANLNQHVCI  120

Query  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180
            IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG
Sbjct  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180

Query  181  EFISKLDRQIeleeqklellqqqkkGYMQKIFSQELRFKDEEGKDYPDWKSKSIQEIFEN  240
            EFISKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRFKDEEGKDYPDWKSKSIQEIFEN
Sbjct  181  EFISKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRFKDEEGKDYPDWKSKSIQEIFEN  240

Query  241  KGGTALETEFNFDGNYKVISIGSYSINSTYNDQNIRVNKNKKTEKYILSKGDLAMVLNDK  300
            KGGTALETEFNFDGNYKVISIGSYSINSTYNDQNIRVNKNKKTEKYILSKGDLAMVLNDK
Sbjct  241  KGGTALETEFNFDGNYKVISIGSYSINSTYNDQNIRVNKNKKTEKYILSKGDLAMVLNDK  300

Query  301  TKDGKIIGRSIFIDKDNQYIYNQRTERLIPFAENDNKFLWFLMNTDLIRNKIKGMMQGAT  360
            TKDGKIIGRSIFIDKDNQYIYNQRTERLIPFAENDNKFLWFLMNTDLIRNKIKGMMQGAT
Sbjct  301  TKDGKIIGRSIFIDKDNQYIYNQRTERLIPFAENDNKFLWFLMNTDLIRNKIKGMMQGAT  360

Query  361  QVYINYSSIKLISIQLPLLEEQQKIRGFLEVLSGITTKQLHKIDQLKERKKAFLQKMFI  419
            QVYINYSSIKLISIQLPLLEEQQKIRGFLEVLSGITTKQLHKIDQLKERKKAFLQKMFI
Sbjct  361  QVYINYSSIKLISIQLPLLEEQQKIRGFLEVLSGITTKQLHKIDQLKERKKAFLQKMFI  419

2) hsdS in NC_003923


> NC_002953_P1|20|G20|49485300|YP_042521.1|Staphylococcus_aureus_subsp._aureus_MSSA476|+|16941..18200|-|SAS0395|restriction 
and modification system specificity protein
Length=419

 Score =  638 bits (2412),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 419/419 (100%), Positives = 419/419 (100%), Gaps = 0/419 (0%)

Query  1    MSNTQKKNVPELRFPGFEGEWEEKKLGDLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60
            MSNTQKKNVPELRFPGFEGEWEEKKLGDLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR
Sbjct  1    MSNTQKKNVPELRFPGFEGEWEEKKLGDLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60

Query  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVEIHANLNQHVCI  120
            NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVEIHANLNQHVCI
Sbjct  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVEIHANLNQHVCI  120

Query  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180
            IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG
Sbjct  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180

Query  181  EFISKLDRQIeleeqklellqqqkkGYMQKIFSQELRFKDEEGKDYPDWKSKSIQEIFEN  240
            EFISKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRFKDEEGKDYPDWKSKSIQEIFEN
Sbjct  181  EFISKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRFKDEEGKDYPDWKSKSIQEIFEN  240

Query  241  KGGTALETEFNFDGNYKVISIGSYSINSTYNDQNIRVNKNKKTEKYILSKGDLAMVLNDK  300
            KGGTALETEFNFDGNYKVISIGSYSINSTYNDQNIRVNKNKKTEKYILSKGDLAMVLNDK
Sbjct  241  KGGTALETEFNFDGNYKVISIGSYSINSTYNDQNIRVNKNKKTEKYILSKGDLAMVLNDK  300

Query  301  TKDGKIIGRSIFIDKDNQYIYNQRTERLIPFAENDNKFLWFLMNTDLIRNKIKGMMQGAT  360
            TKDGKIIGRSIFIDKDNQYIYNQRTERLIPFAENDNKFLWFLMNTDLIRNKIKGMMQGAT
Sbjct  301  TKDGKIIGRSIFIDKDNQYIYNQRTERLIPFAENDNKFLWFLMNTDLIRNKIKGMMQGAT  360

Query  361  QVYINYSSIKLISIQLPLLEEQQKIRGFLEVLSGITTKQLHKIDQLKERKKAFLQKMFI  419
            QVYINYSSIKLISIQLPLLEEQQKIRGFLEVLSGITTKQLHKIDQLKERKKAFLQKMFI
Sbjct  361  QVYINYSSIKLISIQLPLLEEQQKIRGFLEVLSGITTKQLHKIDQLKERKKAFLQKMFI  419

3) hsdS in NC_002951


> NC_002953_P1|20|G20|49485300|YP_042521.1|Staphylococcus_aureus_subsp._aureus_MSSA476|+|16941..18200|-|SAS0395|restriction 
and modification system specificity protein
Length=419

 Score =  364 bits (1366),  Expect = 8e-102, Method: Compositional matrix adjust.
 Identities = 267/421 (64%), Positives = 326/421 (78%), Gaps = 24/421 (5%)

Query  1    MSNTQKKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60
            MSNTQKKNVPELRFPGFEGEWEEKKLG+LTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR
Sbjct  1    MSNTQKKNVPELRFPGFEGEWEEKKLGDLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60

Query  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120
            NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVE HANLNQHVCI
Sbjct  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVEIHANLNQHVCI  120

Query  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180
            IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG
Sbjct  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180

Query  181  KFFSKLDRQIeleeqklellqqqkkGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF  240
             F+SKLDRQIELEEQKLELLQQQKKGYMQKIF+QELRFKDE+G +YP+W +K I++  IF
Sbjct  181  EFISKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRFKDEEGKDYPDWKSKSIQE--IF  238

Query  241  ENNRRKPITSSLREKGLY------PY-----YGATGIIDY----VKDYLFNNEERLLIGE  285
            EN+   ++ + +   G Y      +Y     Y    I          Y++++ +  ++ +
Sbjct  239  ENKGGTALETEFNFDGNYKVISIGSYSINSTYNDQNIRVNKNKKTEKYILSKGDLAMVLN  298

Query  286  DGAKWGQ-FETSSFIA-NGQY----WVNNHAHVVKSNDHNL-FFMNYYLNFKELRAFVTG  338
            D +K G+ +  S FI  + QY    + +       +++  L F+MN  L  + +++ + G
Sbjct  299  DKTKDGKIIGRSIFIDKDNQYIYNQRTERLIPFAENDNKFLWFLMNTDLIRNKIKGMMQG  358

Query  339  NAPAKLTHANLCNINLKIPCLTEQDKVSALLKSIDNKMNNQMNRIELLKERKKGLLQKMF  398
             +   +  +++  I++++P L EQ+K+ ++L  +     +Q+++I+ LKERKK++LQKMF
Sbjct  359  ATQVYINYSSIKLISIQLPLLEEQQKIRGFLEVLSGITTKQLHKIDQLKERKKAFLQKMF  418

Query  399  I  399
            I
Sbjct  419  I  419

4) BN843_18130 in NC_021059


> NC_002953_P1|20|G20|49485300|YP_042521.1|Staphylococcus_aureus_subsp._aureus_MSSA476|+|16941..18200|-|SAS0395|restriction 
and modification system specificity protein
Length=419

 Score =  364 bits (1366),  Expect = 8e-102, Method: Compositional matrix adjust.
 Identities = 267/421 (64%), Positives = 326/421 (78%), Gaps = 24/421 (5%)

Query  1    MSNTQKKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60
            MSNTQKKNVPELRFPGFEGEWEEKKLG+LTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR
Sbjct  1    MSNTQKKNVPELRFPGFEGEWEEKKLGDLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60

Query  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120
            NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVE HANLNQHVCI
Sbjct  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVEIHANLNQHVCI  120

Query  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180
            IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG
Sbjct  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180

Query  181  KFFSKLDRQIeleeqklellqqqkkGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF  240
             F+SKLDRQIELEEQKLELLQQQKKGYMQKIF+QELRFKDE+G +YP+W +K I++  IF
Sbjct  181  EFISKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRFKDEEGKDYPDWKSKSIQE--IF  238

Query  241  ENNRRKPITSSLREKGLY------PY-----YGATGIIDY----VKDYLFNNEERLLIGE  285
            EN+   ++ + +   G Y      +Y     Y    I          Y++++ +  ++ +
Sbjct  239  ENKGGTALETEFNFDGNYKVISIGSYSINSTYNDQNIRVNKNKKTEKYILSKGDLAMVLN  298

Query  286  DGAKWGQ-FETSSFIA-NGQY----WVNNHAHVVKSNDHNL-FFMNYYLNFKELRAFVTG  338
            D +K G+ +  S FI  + QY    + +       +++  L F+MN  L  + +++ + G
Sbjct  299  DKTKDGKIIGRSIFIDKDNQYIYNQRTERLIPFAENDNKFLWFLMNTDLIRNKIKGMMQG  358

Query  339  NAPAKLTHANLCNINLKIPCLTEQDKVSALLKSIDNKMNNQMNRIELLKERKKGLLQKMF  398
             +   +  +++  I++++P L EQ+K+ ++L  +     +Q+++I+ LKERKK++LQKMF
Sbjct  359  ATQVYINYSSIKLISIQLPLLEEQQKIRGFLEVLSGITTKQLHKIDQLKERKKAFLQKMF  418

Query  399  I  399
            I
Sbjct  419  I  419

5) hsdS in NC_009641


> NC_002953_P1|20|G20|49485300|YP_042521.1|Staphylococcus_aureus_subsp._aureus_MSSA476|+|16941..18200|-|SAS0395|restriction 
and modification system specificity protein
Length=419

 Score =  364 bits (1366),  Expect = 8e-102, Method: Compositional matrix adjust.
 Identities = 267/421 (64%), Positives = 326/421 (78%), Gaps = 24/421 (5%)

Query  1    MSNTQKKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60
            MSNTQKKNVPELRFPGFEGEWEEKKLG+LTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR
Sbjct  1    MSNTQKKNVPELRFPGFEGEWEEKKLGDLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60

Query  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120
            NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVE HANLNQHVCI
Sbjct  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVEIHANLNQHVCI  120

Query  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180
            IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG
Sbjct  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180

Query  181  KFFSKLDRQIeleeqklellqqqkkGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF  240
             F+SKLDRQIELEEQKLELLQQQKKGYMQKIF+QELRFKDE+G +YP+W +K I++  IF
Sbjct  181  EFISKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRFKDEEGKDYPDWKSKSIQE--IF  238

Query  241  ENNRRKPITSSLREKGLY------PY-----YGATGIIDY----VKDYLFNNEERLLIGE  285
            EN+   ++ + +   G Y      +Y     Y    I          Y++++ +  ++ +
Sbjct  239  ENKGGTALETEFNFDGNYKVISIGSYSINSTYNDQNIRVNKNKKTEKYILSKGDLAMVLN  298

Query  286  DGAKWGQ-FETSSFIA-NGQY----WVNNHAHVVKSNDHNL-FFMNYYLNFKELRAFVTG  338
            D +K G+ +  S FI  + QY    + +       +++  L F+MN  L  + +++ + G
Sbjct  299  DKTKDGKIIGRSIFIDKDNQYIYNQRTERLIPFAENDNKFLWFLMNTDLIRNKIKGMMQG  358

Query  339  NAPAKLTHANLCNINLKIPCLTEQDKVSALLKSIDNKMNNQMNRIELLKERKKGLLQKMF  398
             +   +  +++  I++++P L EQ+K+ ++L  +     +Q+++I+ LKERKK++LQKMF
Sbjct  359  ATQVYINYSSIKLISIQLPLLEEQQKIRGFLEVLSGITTKQLHKIDQLKERKKAFLQKMF  418

Query  399  I  399
            I
Sbjct  419  I  419

6) SAT0131_01927 in NC_017347


> NC_002953_P1|20|G20|49485300|YP_042521.1|Staphylococcus_aureus_subsp._aureus_MSSA476|+|16941..18200|-|SAS0395|restriction 
and modification system specificity protein
Length=419

 Score =  364 bits (1366),  Expect = 8e-102, Method: Compositional matrix adjust.
 Identities = 267/421 (64%), Positives = 326/421 (78%), Gaps = 24/421 (5%)

Query  1    MSNTQKKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60
            MSNTQKKNVPELRFPGFEGEWEEKKLG+LTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR
Sbjct  1    MSNTQKKNVPELRFPGFEGEWEEKKLGDLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60

Query  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120
            NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVE HANLNQHVCI
Sbjct  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVEIHANLNQHVCI  120

Query  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180
            IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG
Sbjct  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180

Query  181  KFFSKLDRQIeleeqklellqqqkkGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF  240
             F+SKLDRQIELEEQKLELLQQQKKGYMQKIF+QELRFKDE+G +YP+W +K I++  IF
Sbjct  181  EFISKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRFKDEEGKDYPDWKSKSIQE--IF  238

Query  241  ENNRRKPITSSLREKGLY------PY-----YGATGIIDY----VKDYLFNNEERLLIGE  285
            EN+   ++ + +   G Y      +Y     Y    I          Y++++ +  ++ +
Sbjct  239  ENKGGTALETEFNFDGNYKVISIGSYSINSTYNDQNIRVNKNKKTEKYILSKGDLAMVLN  298

Query  286  DGAKWGQ-FETSSFIA-NGQY----WVNNHAHVVKSNDHNL-FFMNYYLNFKELRAFVTG  338
            D +K G+ +  S FI  + QY    + +       +++  L F+MN  L  + +++ + G
Sbjct  299  DKTKDGKIIGRSIFIDKDNQYIYNQRTERLIPFAENDNKFLWFLMNTDLIRNKIKGMMQG  358

Query  339  NAPAKLTHANLCNINLKIPCLTEQDKVSALLKSIDNKMNNQMNRIELLKERKKGLLQKMF  398
             +   +  +++  I++++P L EQ+K+ ++L  +     +Q+++I+ LKERKK++LQKMF
Sbjct  359  ATQVYINYSSIKLISIQLPLLEEQQKIRGFLEVLSGITTKQLHKIDQLKERKKAFLQKMF  418

Query  399  I  399
            I
Sbjct  419  I  419

7) SATW20_18040 in NC_017331


> NC_002953_P1|20|G20|49485300|YP_042521.1|Staphylococcus_aureus_subsp._aureus_MSSA476|+|16941..18200|-|SAS0395|restriction 
and modification system specificity protein
Length=419

 Score =  364 bits (1366),  Expect = 8e-102, Method: Compositional matrix adjust.
 Identities = 267/421 (64%), Positives = 326/421 (78%), Gaps = 24/421 (5%)

Query  1    MSNTQKKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60
            MSNTQKKNVPELRFPGFEGEWEEKKLG+LTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR
Sbjct  1    MSNTQKKNVPELRFPGFEGEWEEKKLGDLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60

Query  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120
            NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVE HANLNQHVCI
Sbjct  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVEIHANLNQHVCI  120

Query  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180
            IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG
Sbjct  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180

Query  181  KFFSKLDRQIeleeqklellqqqkkGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF  240
             F+SKLDRQIELEEQKLELLQQQKKGYMQKIF+QELRFKDE+G +YP+W +K I++  IF
Sbjct  181  EFISKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRFKDEEGKDYPDWKSKSIQE--IF  238

Query  241  ENNRRKPITSSLREKGLY------PY-----YGATGIIDY----VKDYLFNNEERLLIGE  285
            EN+   ++ + +   G Y      +Y     Y    I          Y++++ +  ++ +
Sbjct  239  ENKGGTALETEFNFDGNYKVISIGSYSINSTYNDQNIRVNKNKKTEKYILSKGDLAMVLN  298

Query  286  DGAKWGQ-FETSSFIA-NGQY----WVNNHAHVVKSNDHNL-FFMNYYLNFKELRAFVTG  338
            D +K G+ +  S FI  + QY    + +       +++  L F+MN  L  + +++ + G
Sbjct  299  DKTKDGKIIGRSIFIDKDNQYIYNQRTERLIPFAENDNKFLWFLMNTDLIRNKIKGMMQG  358

Query  339  NAPAKLTHANLCNINLKIPCLTEQDKVSALLKSIDNKMNNQMNRIELLKERKKGLLQKMF  398
             +   +  +++  I++++P L EQ+K+ ++L  +     +Q+++I+ LKERKK++LQKMF
Sbjct  359  ATQVYINYSSIKLISIQLPLLEEQQKIRGFLEVLSGITTKQLHKIDQLKERKKAFLQKMF  418

Query  399  I  399
            I
Sbjct  419  I  419

8) hsdS in NC_007793


> NC_002953_P1|20|G20|49485300|YP_042521.1|Staphylococcus_aureus_subsp._aureus_MSSA476|+|16941..18200|-|SAS0395|restriction 
and modification system specificity protein
Length=419

 Score =  364 bits (1366),  Expect = 8e-102, Method: Compositional matrix adjust.
 Identities = 267/421 (64%), Positives = 326/421 (78%), Gaps = 24/421 (5%)

Query  1    MSNTQKKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60
            MSNTQKKNVPELRFPGFEGEWEEKKLG+LTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR
Sbjct  1    MSNTQKKNVPELRFPGFEGEWEEKKLGDLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60

Query  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120
            NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVE HANLNQHVCI
Sbjct  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVEIHANLNQHVCI  120

Query  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180
            IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG
Sbjct  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180

Query  181  KFFSKLDRQIeleeqklellqqqkkGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF  240
             F+SKLDRQIELEEQKLELLQQQKKGYMQKIF+QELRFKDE+G +YP+W +K I++  IF
Sbjct  181  EFISKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRFKDEEGKDYPDWKSKSIQE--IF  238

Query  241  ENNRRKPITSSLREKGLY------PY-----YGATGIIDY----VKDYLFNNEERLLIGE  285
            EN+   ++ + +   G Y      +Y     Y    I          Y++++ +  ++ +
Sbjct  239  ENKGGTALETEFNFDGNYKVISIGSYSINSTYNDQNIRVNKNKKTEKYILSKGDLAMVLN  298

Query  286  DGAKWGQ-FETSSFIA-NGQY----WVNNHAHVVKSNDHNL-FFMNYYLNFKELRAFVTG  338
            D +K G+ +  S FI  + QY    + +       +++  L F+MN  L  + +++ + G
Sbjct  299  DKTKDGKIIGRSIFIDKDNQYIYNQRTERLIPFAENDNKFLWFLMNTDLIRNKIKGMMQG  358

Query  339  NAPAKLTHANLCNINLKIPCLTEQDKVSALLKSIDNKMNNQMNRIELLKERKKGLLQKMF  398
             +   +  +++  I++++P L EQ+K+ ++L  +     +Q+++I+ LKERKK++LQKMF
Sbjct  359  ATQVYINYSSIKLISIQLPLLEEQQKIRGFLEVLSGITTKQLHKIDQLKERKKAFLQKMF  418

Query  399  I  399
            I
Sbjct  419  I  419

9) hsdS2 in NC_010079


> NC_002953_P1|20|G20|49485300|YP_042521.1|Staphylococcus_aureus_subsp._aureus_MSSA476|+|16941..18200|-|SAS0395|restriction 
and modification system specificity protein
Length=419

 Score =  364 bits (1366),  Expect = 8e-102, Method: Compositional matrix adjust.
 Identities = 267/421 (64%), Positives = 326/421 (78%), Gaps = 24/421 (5%)

Query  1    MSNTQKKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60
            MSNTQKKNVPELRFPGFEGEWEEKKLG+LTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR
Sbjct  1    MSNTQKKNVPELRFPGFEGEWEEKKLGDLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60

Query  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120
            NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVE HANLNQHVCI
Sbjct  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVEIHANLNQHVCI  120

Query  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180
            IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG
Sbjct  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180

Query  181  KFFSKLDRQIeleeqklellqqqkkGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF  240
             F+SKLDRQIELEEQKLELLQQQKKGYMQKIF+QELRFKDE+G +YP+W +K I++  IF
Sbjct  181  EFISKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRFKDEEGKDYPDWKSKSIQE--IF  238

Query  241  ENNRRKPITSSLREKGLY------PY-----YGATGIIDY----VKDYLFNNEERLLIGE  285
            EN+   ++ + +   G Y      +Y     Y    I          Y++++ +  ++ +
Sbjct  239  ENKGGTALETEFNFDGNYKVISIGSYSINSTYNDQNIRVNKNKKTEKYILSKGDLAMVLN  298

Query  286  DGAKWGQ-FETSSFIA-NGQY----WVNNHAHVVKSNDHNL-FFMNYYLNFKELRAFVTG  338
            D +K G+ +  S FI  + QY    + +       +++  L F+MN  L  + +++ + G
Sbjct  299  DKTKDGKIIGRSIFIDKDNQYIYNQRTERLIPFAENDNKFLWFLMNTDLIRNKIKGMMQG  358

Query  339  NAPAKLTHANLCNINLKIPCLTEQDKVSALLKSIDNKMNNQMNRIELLKERKKGLLQKMF  398
             +   +  +++  I++++P L EQ+K+ ++L  +     +Q+++I+ LKERKK++LQKMF
Sbjct  359  ATQVYINYSSIKLISIQLPLLEEQQKIRGFLEVLSGITTKQLHKIDQLKERKKAFLQKMF  418

Query  399  I  399
            I
Sbjct  419  I  419

10) SAOUHSC_01932 in NC_007795


> NC_002953_P1|20|G20|49485300|YP_042521.1|Staphylococcus_aureus_subsp._aureus_MSSA476|+|16941..18200|-|SAS0395|restriction 
and modification system specificity protein
Length=419

 Score =  362 bits (1361),  Expect = 2e-101, Method: Compositional matrix adjust.
 Identities = 266/421 (64%), Positives = 325/421 (78%), Gaps = 24/421 (5%)

Query  1    MSNTQTKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60
            MSNTQ KNVPELRFPGFEGEWEEKKLG+LTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR
Sbjct  1    MSNTQKKNVPELRFPGFEGEWEEKKLGDLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60

Query  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120
            NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVE HANLNQHVCI
Sbjct  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVEIHANLNQHVCI  120

Query  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180
            IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG
Sbjct  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180

Query  181  KFFSKLDRQIeleeqklellqqqkkGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF  240
             F+SKLDRQIELEEQKLELLQQQKKGYMQKIF+QELRFKDE+G +YP+W +K I++  IF
Sbjct  181  EFISKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRFKDEEGKDYPDWKSKSIQE--IF  238

Query  241  ENNRRKPITSSLREKGLY------PY-----YGATGIIDY----VKDYLFNNEERLLIGE  285
            EN+   ++ + +   G Y      +Y     Y    I          Y++++ +  ++ +
Sbjct  239  ENKGGTALETEFNFDGNYKVISIGSYSINSTYNDQNIRVNKNKKTEKYILSKGDLAMVLN  298

Query  286  DGAKWGQ-FETSSFIA-NGQY----WVNNHAHVVKSNDHNL-FFMNYYLNFKELRAFVTG  338
            D +K G+ +  S FI  + QY    + +       +++  L F+MN  L  + +++ + G
Sbjct  299  DKTKDGKIIGRSIFIDKDNQYIYNQRTERLIPFAENDNKFLWFLMNTDLIRNKIKGMMQG  358

Query  339  NAPAKLTHANLCNINLKIPCLTEQDKVSALLKSIDNKMNNQMNRIELLKERKKGLLQKMF  398
             +   +  +++  I++++P L EQ+K+ ++L  +     +Q+++I+ LKERKK++LQKMF
Sbjct  359  ATQVYINYSSIKLISIQLPLLEEQQKIRGFLEVLSGITTKQLHKIDQLKERKKAFLQKMF  418

Query  399  I  399
            I
Sbjct  419  I  419

11) SAVC_08270 in NC_016912


> NC_002953_P1|20|G20|49485300|YP_042521.1|Staphylococcus_aureus_subsp._aureus_MSSA476|+|16941..18200|-|SAS0395|restriction 
and modification system specificity protein
Length=419

 Score =  362 bits (1361),  Expect = 2e-101, Method: Compositional matrix adjust.
 Identities = 266/421 (64%), Positives = 325/421 (78%), Gaps = 24/421 (5%)

Query  1    MSNTQTKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60
            MSNTQ KNVPELRFPGFEGEWEEKKLG+LTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR
Sbjct  1    MSNTQKKNVPELRFPGFEGEWEEKKLGDLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60

Query  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120
            NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVE HANLNQHVCI
Sbjct  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVEIHANLNQHVCI  120

Query  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180
            IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG
Sbjct  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180

Query  181  KFFSKLDRQIeleeqklellqqqkkGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF  240
             F+SKLDRQIELEEQKLELLQQQKKGYMQKIF+QELRFKDE+G +YP+W +K I++  IF
Sbjct  181  EFISKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRFKDEEGKDYPDWKSKSIQE--IF  238

Query  241  ENNRRKPITSSLREKGLY------PY-----YGATGIIDY----VKDYLFNNEERLLIGE  285
            EN+   ++ + +   G Y      +Y     Y    I          Y++++ +  ++ +
Sbjct  239  ENKGGTALETEFNFDGNYKVISIGSYSINSTYNDQNIRVNKNKKTEKYILSKGDLAMVLN  298

Query  286  DGAKWGQ-FETSSFIA-NGQY----WVNNHAHVVKSNDHNL-FFMNYYLNFKELRAFVTG  338
            D +K G+ +  S FI  + QY    + +       +++  L F+MN  L  + +++ + G
Sbjct  299  DKTKDGKIIGRSIFIDKDNQYIYNQRTERLIPFAENDNKFLWFLMNTDLIRNKIKGMMQG  358

Query  339  NAPAKLTHANLCNINLKIPCLTEQDKVSALLKSIDNKMNNQMNRIELLKERKKGLLQKMF  398
             +   +  +++  I++++P L EQ+K+ ++L  +     +Q+++I+ LKERKK++LQKMF
Sbjct  359  ATQVYINYSSIKLISIQLPLLEEQQKIRGFLEVLSGITTKQLHKIDQLKERKKAFLQKMF  418

Query  399  I  399
            I
Sbjct  419  I  419

12) SAI1T1_2003130 in NC_020529


> NC_002953_P1|20|G20|49485300|YP_042521.1|Staphylococcus_aureus_subsp._aureus_MSSA476|+|16941..18200|-|SAS0395|restriction 
and modification system specificity protein
Length=419

 Score =  346 bits (1300),  Expect = 1e-96, Method: Compositional matrix adjust.
 Identities = 260/414 (63%), Positives = 315/414 (77%), Gaps = 18/414 (4%)

Query  1    MPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIRNGKLNLND  60
            +PELRFPGFEGEWEEKKLG+LTTKIGSGKTPKGGSENYTNKGIPFLRSQNIRNGKLNLND
Sbjct  9    VPELRFPGFEGEWEEKKLGDLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIRNGKLNLND  68

Query  61   LVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCIIRLKKEYY  120
            LVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVE HANLNQHVCIIRLKKEYY
Sbjct  69   LVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVEIHANLNQHVCIIRLKKEYY  128

Query  121  YNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIGQFFSKLDR  180
            YNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG+F+SKLDR
Sbjct  129  YNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIGEFISKLDR  188

Query  181  QIeleeqklellqqqkkGYMQKIFSQELRFKDENGEDYPDWENSKIEKYLKERNERSDKG  240
            QIELEEQKLELLQQQKKGYMQKIFSQELRFKDE+G DYPDW +  I+  + ++   +   
Sbjct  189  QIELEEQKLELLQQQKKGYMQKIFSQELRFKDEEGKDYPDWKSKSIQEIFENKGGTALET  248

Query  241  Q--------MLSVTINSGIIKFSELDRkdnsskdksnYKVVRKNDIA--YNSMRMWQGAS  290
            +        ++S+   S    +++ + + N +K   +Y ++ K D+A   N         
Sbjct  249  EFNFDGNYKVISIGSYSINSTYNDQNIRVNKNKKTEKY-ILSKGDLAMVLNDKTKDGKII  307

Query  291  GKSNYNG-----IVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKFKINSQGLTSDTWNLK  345
            G+S + +     I +     L P  +  + F+ +  +T+ + +K+K   QG T     ++
Sbjct  308  GRSIFIDKDNQYIYNQRTERLIPFAENDNKFLWFLMNTDLIRNKIKGMMQGATQV--YIN  365

Query  346  YKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQKMKIEILEKEKQSFLQKMFL  399
            Y  +K I+I++P+LEEQ+KI +F+  +  + +KQ  KI+ L   K++FLQKMF+
Sbjct  366  YSSIKLISIQLPLLEEQQKIRGFLEVLSGITTKQLHKIDQLKERKKAFLQKMFI  419

13) SAI2T2_1003130 in NC_020564


> NC_002953_P1|20|G20|49485300|YP_042521.1|Staphylococcus_aureus_subsp._aureus_MSSA476|+|16941..18200|-|SAS0395|restriction 
and modification system specificity protein
Length=419

 Score =  346 bits (1300),  Expect = 1e-96, Method: Compositional matrix adjust.
 Identities = 260/414 (63%), Positives = 315/414 (77%), Gaps = 18/414 (4%)

Query  1    MPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIRNGKLNLND  60
            +PELRFPGFEGEWEEKKLG+LTTKIGSGKTPKGGSENYTNKGIPFLRSQNIRNGKLNLND
Sbjct  9    VPELRFPGFEGEWEEKKLGDLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIRNGKLNLND  68

Query  61   LVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCIIRLKKEYY  120
            LVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVE HANLNQHVCIIRLKKEYY
Sbjct  69   LVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVEIHANLNQHVCIIRLKKEYY  128

Query  121  YNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIGQFFSKLDR  180
            YNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG+F+SKLDR
Sbjct  129  YNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIGEFISKLDR  188

Query  181  QIeleeqklellqqqkkGYMQKIFSQELRFKDENGEDYPDWENSKIEKYLKERNERSDKG  240
            QIELEEQKLELLQQQKKGYMQKIFSQELRFKDE+G DYPDW +  I+  + ++   +   
Sbjct  189  QIELEEQKLELLQQQKKGYMQKIFSQELRFKDEEGKDYPDWKSKSIQEIFENKGGTALET  248

Query  241  Q--------MLSVTINSGIIKFSELDRkdnsskdksnYKVVRKNDIA--YNSMRMWQGAS  290
            +        ++S+   S    +++ + + N +K   +Y ++ K D+A   N         
Sbjct  249  EFNFDGNYKVISIGSYSINSTYNDQNIRVNKNKKTEKY-ILSKGDLAMVLNDKTKDGKII  307

Query  291  GKSNYNG-----IVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKFKINSQGLTSDTWNLK  345
            G+S + +     I +     L P  +  + F+ +  +T+ + +K+K   QG T     ++
Sbjct  308  GRSIFIDKDNQYIYNQRTERLIPFAENDNKFLWFLMNTDLIRNKIKGMMQGATQV--YIN  365

Query  346  YKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQKMKIEILEKEKQSFLQKMFL  399
            Y  +K I+I++P+LEEQ+KI +F+  +  + +KQ  KI+ L   K++FLQKMF+
Sbjct  366  YSSIKLISIQLPLLEEQQKIRGFLEVLSGITTKQLHKIDQLKERKKAFLQKMFI  419

14) SAI3T3_1003130 in NC_020532


> NC_002953_P1|20|G20|49485300|YP_042521.1|Staphylococcus_aureus_subsp._aureus_MSSA476|+|16941..18200|-|SAS0395|restriction 
and modification system specificity protein
Length=419

 Score =  346 bits (1300),  Expect = 1e-96, Method: Compositional matrix adjust.
 Identities = 260/414 (63%), Positives = 315/414 (77%), Gaps = 18/414 (4%)

Query  1    MPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIRNGKLNLND  60
            +PELRFPGFEGEWEEKKLG+LTTKIGSGKTPKGGSENYTNKGIPFLRSQNIRNGKLNLND
Sbjct  9    VPELRFPGFEGEWEEKKLGDLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIRNGKLNLND  68

Query  61   LVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCIIRLKKEYY  120
            LVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVE HANLNQHVCIIRLKKEYY
Sbjct  69   LVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVEIHANLNQHVCIIRLKKEYY  128

Query  121  YNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIGQFFSKLDR  180
            YNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG+F+SKLDR
Sbjct  129  YNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIGEFISKLDR  188

Query  181  QIeleeqklellqqqkkGYMQKIFSQELRFKDENGEDYPDWENSKIEKYLKERNERSDKG  240
            QIELEEQKLELLQQQKKGYMQKIFSQELRFKDE+G DYPDW +  I+  + ++   +   
Sbjct  189  QIELEEQKLELLQQQKKGYMQKIFSQELRFKDEEGKDYPDWKSKSIQEIFENKGGTALET  248

Query  241  Q--------MLSVTINSGIIKFSELDRkdnsskdksnYKVVRKNDIA--YNSMRMWQGAS  290
            +        ++S+   S    +++ + + N +K   +Y ++ K D+A   N         
Sbjct  249  EFNFDGNYKVISIGSYSINSTYNDQNIRVNKNKKTEKY-ILSKGDLAMVLNDKTKDGKII  307

Query  291  GKSNYNG-----IVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKFKINSQGLTSDTWNLK  345
            G+S + +     I +     L P  +  + F+ +  +T+ + +K+K   QG T     ++
Sbjct  308  GRSIFIDKDNQYIYNQRTERLIPFAENDNKFLWFLMNTDLIRNKIKGMMQGATQV--YIN  365

Query  346  YKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQKMKIEILEKEKQSFLQKMFL  399
            Y  +K I+I++P+LEEQ+KI +F+  +  + +KQ  KI+ L   K++FLQKMF+
Sbjct  366  YSSIKLISIQLPLLEEQQKIRGFLEVLSGITTKQLHKIDQLKERKKAFLQKMFI  419

15) SAI4T8_1003130 in NC_020533


> NC_002953_P1|20|G20|49485300|YP_042521.1|Staphylococcus_aureus_subsp._aureus_MSSA476|+|16941..18200|-|SAS0395|restriction 
and modification system specificity protein
Length=419

 Score =  346 bits (1300),  Expect = 1e-96, Method: Compositional matrix adjust.
 Identities = 260/414 (63%), Positives = 315/414 (77%), Gaps = 18/414 (4%)

Query  1    MPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIRNGKLNLND  60
            +PELRFPGFEGEWEEKKLG+LTTKIGSGKTPKGGSENYTNKGIPFLRSQNIRNGKLNLND
Sbjct  9    VPELRFPGFEGEWEEKKLGDLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIRNGKLNLND  68

Query  61   LVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCIIRLKKEYY  120
            LVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVE HANLNQHVCIIRLKKEYY
Sbjct  69   LVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVEIHANLNQHVCIIRLKKEYY  128

Query  121  YNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIGQFFSKLDR  180
            YNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG+F+SKLDR
Sbjct  129  YNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIGEFISKLDR  188

Query  181  QIeleeqklellqqqkkGYMQKIFSQELRFKDENGEDYPDWENSKIEKYLKERNERSDKG  240
            QIELEEQKLELLQQQKKGYMQKIFSQELRFKDE+G DYPDW +  I+  + ++   +   
Sbjct  189  QIELEEQKLELLQQQKKGYMQKIFSQELRFKDEEGKDYPDWKSKSIQEIFENKGGTALET  248

Query  241  Q--------MLSVTINSGIIKFSELDRkdnsskdksnYKVVRKNDIA--YNSMRMWQGAS  290
            +        ++S+   S    +++ + + N +K   +Y ++ K D+A   N         
Sbjct  249  EFNFDGNYKVISIGSYSINSTYNDQNIRVNKNKKTEKY-ILSKGDLAMVLNDKTKDGKII  307

Query  291  GKSNYNG-----IVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKFKINSQGLTSDTWNLK  345
            G+S + +     I +     L P  +  + F+ +  +T+ + +K+K   QG T     ++
Sbjct  308  GRSIFIDKDNQYIYNQRTERLIPFAENDNKFLWFLMNTDLIRNKIKGMMQGATQV--YIN  365

Query  346  YKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQKMKIEILEKEKQSFLQKMFL  399
            Y  +K I+I++P+LEEQ+KI +F+  +  + +KQ  KI+ L   K++FLQKMF+
Sbjct  366  YSSIKLISIQLPLLEEQQKIRGFLEVLSGITTKQLHKIDQLKERKKAFLQKMFI  419

16) SAI7S6_1003130 in NC_020537


> NC_002953_P1|20|G20|49485300|YP_042521.1|Staphylococcus_aureus_subsp._aureus_MSSA476|+|16941..18200|-|SAS0395|restriction 
and modification system specificity protein
Length=419

 Score =  346 bits (1300),  Expect = 1e-96, Method: Compositional matrix adjust.
 Identities = 260/414 (63%), Positives = 315/414 (77%), Gaps = 18/414 (4%)

Query  1    MPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIRNGKLNLND  60
            +PELRFPGFEGEWEEKKLG+LTTKIGSGKTPKGGSENYTNKGIPFLRSQNIRNGKLNLND
Sbjct  9    VPELRFPGFEGEWEEKKLGDLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIRNGKLNLND  68

Query  61   LVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCIIRLKKEYY  120
            LVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVE HANLNQHVCIIRLKKEYY
Sbjct  69   LVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVEIHANLNQHVCIIRLKKEYY  128

Query  121  YNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIGQFFSKLDR  180
            YNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG+F+SKLDR
Sbjct  129  YNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIGEFISKLDR  188

Query  181  QIeleeqklellqqqkkGYMQKIFSQELRFKDENGEDYPDWENSKIEKYLKERNERSDKG  240
            QIELEEQKLELLQQQKKGYMQKIFSQELRFKDE+G DYPDW +  I+  + ++   +   
Sbjct  189  QIELEEQKLELLQQQKKGYMQKIFSQELRFKDEEGKDYPDWKSKSIQEIFENKGGTALET  248

Query  241  Q--------MLSVTINSGIIKFSELDRkdnsskdksnYKVVRKNDIA--YNSMRMWQGAS  290
            +        ++S+   S    +++ + + N +K   +Y ++ K D+A   N         
Sbjct  249  EFNFDGNYKVISIGSYSINSTYNDQNIRVNKNKKTEKY-ILSKGDLAMVLNDKTKDGKII  307

Query  291  GKSNYNG-----IVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKFKINSQGLTSDTWNLK  345
            G+S + +     I +     L P  +  + F+ +  +T+ + +K+K   QG T     ++
Sbjct  308  GRSIFIDKDNQYIYNQRTERLIPFAENDNKFLWFLMNTDLIRNKIKGMMQGATQV--YIN  365

Query  346  YKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQKMKIEILEKEKQSFLQKMFL  399
            Y  +K I+I++P+LEEQ+KI +F+  +  + +KQ  KI+ L   K++FLQKMF+
Sbjct  366  YSSIKLISIQLPLLEEQQKIRGFLEVLSGITTKQLHKIDQLKERKKAFLQKMFI  419

17) SAI5S5_1003120 in NC_020566


> NC_002953_P1|20|G20|49485300|YP_042521.1|Staphylococcus_aureus_subsp._aureus_MSSA476|+|16941..18200|-|SAS0395|restriction 
and modification system specificity protein
Length=419

 Score =  346 bits (1300),  Expect = 1e-96, Method: Compositional matrix adjust.
 Identities = 260/414 (63%), Positives = 315/414 (77%), Gaps = 18/414 (4%)

Query  1    MPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIRNGKLNLND  60
            +PELRFPGFEGEWEEKKLG+LTTKIGSGKTPKGGSENYTNKGIPFLRSQNIRNGKLNLND
Sbjct  9    VPELRFPGFEGEWEEKKLGDLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIRNGKLNLND  68

Query  61   LVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCIIRLKKEYY  120
            LVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVE HANLNQHVCIIRLKKEYY
Sbjct  69   LVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVEIHANLNQHVCIIRLKKEYY  128

Query  121  YNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIGQFFSKLDR  180
            YNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG+F+SKLDR
Sbjct  129  YNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIGEFISKLDR  188

Query  181  QIeleeqklellqqqkkGYMQKIFSQELRFKDENGEDYPDWENSKIEKYLKERNERSDKG  240
            QIELEEQKLELLQQQKKGYMQKIFSQELRFKDE+G DYPDW +  I+  + ++   +   
Sbjct  189  QIELEEQKLELLQQQKKGYMQKIFSQELRFKDEEGKDYPDWKSKSIQEIFENKGGTALET  248

Query  241  Q--------MLSVTINSGIIKFSELDRkdnsskdksnYKVVRKNDIA--YNSMRMWQGAS  290
            +        ++S+   S    +++ + + N +K   +Y ++ K D+A   N         
Sbjct  249  EFNFDGNYKVISIGSYSINSTYNDQNIRVNKNKKTEKY-ILSKGDLAMVLNDKTKDGKII  307

Query  291  GKSNYNG-----IVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKFKINSQGLTSDTWNLK  345
            G+S + +     I +     L P  +  + F+ +  +T+ + +K+K   QG T     ++
Sbjct  308  GRSIFIDKDNQYIYNQRTERLIPFAENDNKFLWFLMNTDLIRNKIKGMMQGATQV--YIN  365

Query  346  YKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQKMKIEILEKEKQSFLQKMFL  399
            Y  +K I+I++P+LEEQ+KI +F+  +  + +KQ  KI+ L   K++FLQKMF+
Sbjct  366  YSSIKLISIQLPLLEEQQKIRGFLEVLSGITTKQLHKIDQLKERKKAFLQKMFI  419

18) SAI6T6_1003130 in NC_020536


> NC_002953_P1|20|G20|49485300|YP_042521.1|Staphylococcus_aureus_subsp._aureus_MSSA476|+|16941..18200|-|SAS0395|restriction 
and modification system specificity protein
Length=419

 Score =  346 bits (1300),  Expect = 1e-96, Method: Compositional matrix adjust.
 Identities = 260/414 (63%), Positives = 315/414 (77%), Gaps = 18/414 (4%)

Query  1    MPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIRNGKLNLND  60
            +PELRFPGFEGEWEEKKLG+LTTKIGSGKTPKGGSENYTNKGIPFLRSQNIRNGKLNLND
Sbjct  9    VPELRFPGFEGEWEEKKLGDLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIRNGKLNLND  68

Query  61   LVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCIIRLKKEYY  120
            LVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVE HANLNQHVCIIRLKKEYY
Sbjct  69   LVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVEIHANLNQHVCIIRLKKEYY  128

Query  121  YNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIGQFFSKLDR  180
            YNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG+F+SKLDR
Sbjct  129  YNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIGEFISKLDR  188

Query  181  QIeleeqklellqqqkkGYMQKIFSQELRFKDENGEDYPDWENSKIEKYLKERNERSDKG  240
            QIELEEQKLELLQQQKKGYMQKIFSQELRFKDE+G DYPDW +  I+  + ++   +   
Sbjct  189  QIELEEQKLELLQQQKKGYMQKIFSQELRFKDEEGKDYPDWKSKSIQEIFENKGGTALET  248

Query  241  Q--------MLSVTINSGIIKFSELDRkdnsskdksnYKVVRKNDIA--YNSMRMWQGAS  290
            +        ++S+   S    +++ + + N +K   +Y ++ K D+A   N         
Sbjct  249  EFNFDGNYKVISIGSYSINSTYNDQNIRVNKNKKTEKY-ILSKGDLAMVLNDKTKDGKII  307

Query  291  GKSNYNG-----IVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKFKINSQGLTSDTWNLK  345
            G+S + +     I +     L P  +  + F+ +  +T+ + +K+K   QG T     ++
Sbjct  308  GRSIFIDKDNQYIYNQRTERLIPFAENDNKFLWFLMNTDLIRNKIKGMMQGATQV--YIN  365

Query  346  YKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQKMKIEILEKEKQSFLQKMFL  399
            Y  +K I+I++P+LEEQ+KI +F+  +  + +KQ  KI+ L   K++FLQKMF+
Sbjct  366  YSSIKLISIQLPLLEEQQKIRGFLEVLSGITTKQLHKIDQLKERKKAFLQKMFI  419

19) SAI8T7_1003130 in NC_020568


> NC_002953_P1|20|G20|49485300|YP_042521.1|Staphylococcus_aureus_subsp._aureus_MSSA476|+|16941..18200|-|SAS0395|restriction 
and modification system specificity protein
Length=419

 Score =  346 bits (1300),  Expect = 1e-96, Method: Compositional matrix adjust.
 Identities = 260/414 (63%), Positives = 315/414 (77%), Gaps = 18/414 (4%)

Query  1    MPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIRNGKLNLND  60
            +PELRFPGFEGEWEEKKLG+LTTKIGSGKTPKGGSENYTNKGIPFLRSQNIRNGKLNLND
Sbjct  9    VPELRFPGFEGEWEEKKLGDLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIRNGKLNLND  68

Query  61   LVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCIIRLKKEYY  120
            LVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVE HANLNQHVCIIRLKKEYY
Sbjct  69   LVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVEIHANLNQHVCIIRLKKEYY  128

Query  121  YNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIGQFFSKLDR  180
            YNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG+F+SKLDR
Sbjct  129  YNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIGEFISKLDR  188

Query  181  QIeleeqklellqqqkkGYMQKIFSQELRFKDENGEDYPDWENSKIEKYLKERNERSDKG  240
            QIELEEQKLELLQQQKKGYMQKIFSQELRFKDE+G DYPDW +  I+  + ++   +   
Sbjct  189  QIELEEQKLELLQQQKKGYMQKIFSQELRFKDEEGKDYPDWKSKSIQEIFENKGGTALET  248

Query  241  Q--------MLSVTINSGIIKFSELDRkdnsskdksnYKVVRKNDIA--YNSMRMWQGAS  290
            +        ++S+   S    +++ + + N +K   +Y ++ K D+A   N         
Sbjct  249  EFNFDGNYKVISIGSYSINSTYNDQNIRVNKNKKTEKY-ILSKGDLAMVLNDKTKDGKII  307

Query  291  GKSNYNG-----IVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKFKINSQGLTSDTWNLK  345
            G+S + +     I +     L P  +  + F+ +  +T+ + +K+K   QG T     ++
Sbjct  308  GRSIFIDKDNQYIYNQRTERLIPFAENDNKFLWFLMNTDLIRNKIKGMMQGATQV--YIN  365

Query  346  YKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQKMKIEILEKEKQSFLQKMFL  399
            Y  +K I+I++P+LEEQ+KI +F+  +  + +KQ  KI+ L   K++FLQKMF+
Sbjct  366  YSSIKLISIQLPLLEEQQKIRGFLEVLSGITTKQLHKIDQLKERKKAFLQKMFI  419

20) SAS1731 in NC_002953


> NC_002953_P1|20|G20|49485300|YP_042521.1|Staphylococcus_aureus_subsp._aureus_MSSA476|+|16941..18200|-|SAS0395|restriction 
and modification system specificity protein
Length=419

 Score =  342 bits (1285),  Expect = 2e-95, Method: Compositional matrix adjust.
 Identities = 255/405 (63%), Positives = 313/405 (78%), Gaps = 24/405 (5%)

Query  1    MSNTQTKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60
            MSNTQ KNVPELRFPGFEGEWEEKKLG+LTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR
Sbjct  1    MSNTQKKNVPELRFPGFEGEWEEKKLGDLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60

Query  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120
            NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVE HANLNQHVCI
Sbjct  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVEIHANLNQHVCI  120

Query  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180
            IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG
Sbjct  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180

Query  181  KFFSKLDRQIeleeqklellqqqkkGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF  240
             F+SKLDRQIELEEQKLELLQQQKKGYMQKIF+QELRFKDE+G +YP+W +K I++  IF
Sbjct  181  EFISKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRFKDEEGKDYPDWKSKSIQE--IF  238

Query  241  ENNRRKPITSSLREKGLY------PY-----YGATGI-IDYVK---DYLFNNEERLLIGE  285
            EN+   ++ + +   G Y      +Y     Y    I ++  K    Y++++ +  ++ +
Sbjct  239  ENKGGTALETEFNFDGNYKVISIGSYSINSTYNDQNIRVNKNKKTEKYILSKGDLAMVLN  298

Query  286  DGAKWGQ-FETSSFIA-NGQY----WVNNHAHVVKSNDHNL-FFMNYYLNFKELRAFVTG  338
            D +K G+ +  S FI  + QY    + +       +++  L F+MN  L  + +++ + G
Sbjct  299  DKTKDGKIIGRSIFIDKDNQYIYNQRTERLIPFAENDNKFLWFLMNTDLIRNKIKGMMQG  358

Query  339  NAPAKLTHANLCNINLKIPCLTEQDKVSALLKSIDNKMNNQMNRI  383
             +   +  +++  I++++P L EQ+K+ ++L  +     +Q+++I
Sbjct  359  ATQVYINYSSIKLISIQLPLLEEQQKIRGFLEVLSGITTKQLHKI  403

21) hsdS in NC_003923


> NC_002953_P1|20|G20|49485300|YP_042521.1|Staphylococcus_aureus_subsp._aureus_MSSA476|+|16941..18200|-|SAS0395|restriction 
and modification system specificity protein
Length=419

 Score =  342 bits (1285),  Expect = 2e-95, Method: Compositional matrix adjust.
 Identities = 255/405 (63%), Positives = 313/405 (78%), Gaps = 24/405 (5%)

Query  1    MSNTQTKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60
            MSNTQ KNVPELRFPGFEGEWEEKKLG+LTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR
Sbjct  1    MSNTQKKNVPELRFPGFEGEWEEKKLGDLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60

Query  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120
            NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVE HANLNQHVCI
Sbjct  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVEIHANLNQHVCI  120

Query  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180
            IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG
Sbjct  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180

Query  181  KFFSKLDRQIeleeqklellqqqkkGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF  240
             F+SKLDRQIELEEQKLELLQQQKKGYMQKIF+QELRFKDE+G +YP+W +K I++  IF
Sbjct  181  EFISKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRFKDEEGKDYPDWKSKSIQE--IF  238

Query  241  ENNRRKPITSSLREKGLY------PY-----YGATGI-IDYVK---DYLFNNEERLLIGE  285
            EN+   ++ + +   G Y      +Y     Y    I ++  K    Y++++ +  ++ +
Sbjct  239  ENKGGTALETEFNFDGNYKVISIGSYSINSTYNDQNIRVNKNKKTEKYILSKGDLAMVLN  298

Query  286  DGAKWGQ-FETSSFIA-NGQY----WVNNHAHVVKSNDHNL-FFMNYYLNFKELRAFVTG  338
            D +K G+ +  S FI  + QY    + +       +++  L F+MN  L  + +++ + G
Sbjct  299  DKTKDGKIIGRSIFIDKDNQYIYNQRTERLIPFAENDNKFLWFLMNTDLIRNKIKGMMQG  358

Query  339  NAPAKLTHANLCNINLKIPCLTEQDKVSALLKSIDNKMNNQMNRI  383
             +   +  +++  I++++P L EQ+K+ ++L  +     +Q+++I
Sbjct  359  ATQVYINYSSIKLISIQLPLLEEQQKIRGFLEVLSGITTKQLHKI  403

22) SA2981_1762 in NC_017340


> NC_002953_P1|20|G20|49485300|YP_042521.1|Staphylococcus_aureus_subsp._aureus_MSSA476|+|16941..18200|-|SAS0395|restriction 
and modification system specificity protein
Length=419

 Score =  337 bits (1265),  Expect = 8e-94, Method: Compositional matrix adjust.
 Identities = 261/422 (62%), Positives = 329/422 (78%), Gaps = 16/422 (3%)

Query  1    MSNTQTKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60
            MSNTQ KNVPELRFPGFEGEWEEKKLG+LTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR
Sbjct  1    MSNTQKKNVPELRFPGFEGEWEEKKLGDLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60

Query  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120
            NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVE HANLNQHVCI
Sbjct  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVEIHANLNQHVCI  120

Query  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180
            IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG
Sbjct  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180

Query  181  QFFSkldqqieleeqklellqqqkkCYIQKIFSQELRFKDEEGNYYKGWNKKQLKDVLEF  240
            +F+SKLD+QIELEEQKLELLQQQKK Y+QKIFSQELRFKDEEG+ Y +W+ K +++++E 
Sbjct  181  EFISKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRFKDEEGKDYPDWKSKSIQEIFEN  240

Query  241  SNKRTIN-----ENEYPVLTSSRQGLILQSDYYKDR-KTFAESNIGYFILPKNHIT--YR  292
                +++     + +Y V++ +  +  ++S Y  +  +   + +   +IL+K +++    
Sbjct  241  KGGTALETEFNFDGNYKVISIG--SYSINSTYNDQNIRVNKNKKTEKYILSKGDLAMVLN  298

Query  293  SRSDDGIFKFNLNLMIDVGIISKYYP----VFKGIDANQYYLTLHLNYQLKKEYIK-YAT  347
             ++ DG + +  ++ ID +    Y      ++   + ++ +L + +N +L ++ IK    
Sbjct  299  DKTKDGKI-IGRSIFIDKDNQYIYNQRTERLIPFAENDNKFLWFLMNTDLIRNKIKGMMQ  357

Query  348  GTSQLVLSQKDLQNIKTKLPSYEEQQKIGDFFSEIDRLVEKQSSKVGRLKVRKKELLQKM  407
            G++Q+ ++   ++ I  +LP  EEQQKI +F+  +  +  KQ  K+++LK RKK +LQKM
Sbjct  358  GATQVYINYSSIKLISIQLPLLEEQQKIRGFLEVLSGITTKQLHKIDQLKERKKAFLQKM  417

Query  408  FV  409
            F+
Sbjct  418  FI  419

23) ECTR2_1640 in NC_017343


> NC_002953_P1|20|G20|49485300|YP_042521.1|Staphylococcus_aureus_subsp._aureus_MSSA476|+|16941..18200|-|SAS0395|restriction 
and modification system specificity protein
Length=419

 Score =  337 bits (1265),  Expect = 8e-94, Method: Compositional matrix adjust.
 Identities = 261/422 (62%), Positives = 329/422 (78%), Gaps = 16/422 (3%)

Query  1    MSNTQTKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60
            MSNTQ KNVPELRFPGFEGEWEEKKLG+LTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR
Sbjct  1    MSNTQKKNVPELRFPGFEGEWEEKKLGDLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60

Query  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120
            NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVE HANLNQHVCI
Sbjct  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVEIHANLNQHVCI  120

Query  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180
            IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG
Sbjct  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180

Query  181  QFFSkldqqieleeqklellqqqkkCYIQKIFSQELRFKDEEGNYYKGWNKKQLKDVLEF  240
            +F+SKLD+QIELEEQKLELLQQQKK Y+QKIFSQELRFKDEEG+ Y +W+ K +++++E 
Sbjct  181  EFISKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRFKDEEGKDYPDWKSKSIQEIFEN  240

Query  241  SNKRTIN-----ENEYPVLTSSRQGLILQSDYYKDR-KTFAESNIGYFILPKNHIT--YR  292
                +++     + +Y V++ +  +  ++S Y  +  +   + +   +IL+K +++    
Sbjct  241  KGGTALETEFNFDGNYKVISIG--SYSINSTYNDQNIRVNKNKKTEKYILSKGDLAMVLN  298

Query  293  SRSDDGIFKFNLNLMIDVGIISKYYP----VFKGIDANQYYLTLHLNYQLKKEYIK-YAT  347
             ++ DG + +  ++ ID +    Y      ++   + ++ +L + +N +L ++ IK    
Sbjct  299  DKTKDGKI-IGRSIFIDKDNQYIYNQRTERLIPFAENDNKFLWFLMNTDLIRNKIKGMMQ  357

Query  348  GTSQLVLSQKDLQNIKTKLPSYEEQQKIGDFFSEIDRLVEKQSSKVGRLKVRKKELLQKM  407
            G++Q+ ++   ++ I  +LP  EEQQKI +F+  +  +  KQ  K+++LK RKK +LQKM
Sbjct  358  GATQVYINYSSIKLISIQLPLLEEQQKIRGFLEVLSGITTKQLHKIDQLKERKKAFLQKM  417

Query  408  FV  409
            F+
Sbjct  418  FI  419

24) hsdS in NC_013450


> NC_002953_P1|20|G20|49485300|YP_042521.1|Staphylococcus_aureus_subsp._aureus_MSSA476|+|16941..18200|-|SAS0395|restriction 
and modification system specificity protein
Length=419

 Score =  337 bits (1265),  Expect = 8e-94, Method: Compositional matrix adjust.
 Identities = 261/422 (62%), Positives = 329/422 (78%), Gaps = 16/422 (3%)

Query  1    MSNTQTKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60
            MSNTQ KNVPELRFPGFEGEWEEKKLG+LTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR
Sbjct  1    MSNTQKKNVPELRFPGFEGEWEEKKLGDLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60

Query  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120
            NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVE HANLNQHVCI
Sbjct  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVEIHANLNQHVCI  120

Query  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180
            IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG
Sbjct  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180

Query  181  QFFSkldqqieleeqklellqqqkkCYIQKIFSQELRFKDEEGNYYKGWNKKQLKDVLEF  240
            +F+SKLD+QIELEEQKLELLQQQKK Y+QKIFSQELRFKDEEG+ Y +W+ K +++++E 
Sbjct  181  EFISKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRFKDEEGKDYPDWKSKSIQEIFEN  240

Query  241  SNKRTIN-----ENEYPVLTSSRQGLILQSDYYKDR-KTFAESNIGYFILPKNHIT--YR  292
                +++     + +Y V++ +  +  ++S Y  +  +   + +   +IL+K +++    
Sbjct  241  KGGTALETEFNFDGNYKVISIG--SYSINSTYNDQNIRVNKNKKTEKYILSKGDLAMVLN  298

Query  293  SRSDDGIFKFNLNLMIDVGIISKYYP----VFKGIDANQYYLTLHLNYQLKKEYIK-YAT  347
             ++ DG + +  ++ ID +    Y      ++   + ++ +L + +N +L ++ IK    
Sbjct  299  DKTKDGKI-IGRSIFIDKDNQYIYNQRTERLIPFAENDNKFLWFLMNTDLIRNKIKGMMQ  357

Query  348  GTSQLVLSQKDLQNIKTKLPSYEEQQKIGDFFSEIDRLVEKQSSKVGRLKVRKKELLQKM  407
            G++Q+ ++   ++ I  +LP  EEQQKI +F+  +  +  KQ  K+++LK RKK +LQKM
Sbjct  358  GATQVYINYSSIKLISIQLPLLEEQQKIRGFLEVLSGITTKQLHKIDQLKERKKAFLQKM  417

Query  408  FV  409
            F+
Sbjct  418  FI  419

25) SaurJH1_1894 in NC_009632


> NC_002953_P1|20|G20|49485300|YP_042521.1|Staphylococcus_aureus_subsp._aureus_MSSA476|+|16941..18200|-|SAS0395|restriction 
and modification system specificity protein
Length=419

 Score =  337 bits (1265),  Expect = 8e-94, Method: Compositional matrix adjust.
 Identities = 261/422 (62%), Positives = 329/422 (78%), Gaps = 16/422 (3%)

Query  1    MSNTQTKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60
            MSNTQ KNVPELRFPGFEGEWEEKKLG+LTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR
Sbjct  1    MSNTQKKNVPELRFPGFEGEWEEKKLGDLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60

Query  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120
            NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVE HANLNQHVCI
Sbjct  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVEIHANLNQHVCI  120

Query  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180
            IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG
Sbjct  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180

Query  181  QFFSkldqqieleeqklellqqqkkCYIQKIFSQELRFKDEEGNYYKGWNKKQLKDVLEF  240
            +F+SKLD+QIELEEQKLELLQQQKK Y+QKIFSQELRFKDEEG+ Y +W+ K +++++E 
Sbjct  181  EFISKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRFKDEEGKDYPDWKSKSIQEIFEN  240

Query  241  SNKRTIN-----ENEYPVLTSSRQGLILQSDYYKDR-KTFAESNIGYFILPKNHIT--YR  292
                +++     + +Y V++ +  +  ++S Y  +  +   + +   +IL+K +++    
Sbjct  241  KGGTALETEFNFDGNYKVISIG--SYSINSTYNDQNIRVNKNKKTEKYILSKGDLAMVLN  298

Query  293  SRSDDGIFKFNLNLMIDVGIISKYYP----VFKGIDANQYYLTLHLNYQLKKEYIK-YAT  347
             ++ DG + +  ++ ID +    Y      ++   + ++ +L + +N +L ++ IK    
Sbjct  299  DKTKDGKI-IGRSIFIDKDNQYIYNQRTERLIPFAENDNKFLWFLMNTDLIRNKIKGMMQ  357

Query  348  GTSQLVLSQKDLQNIKTKLPSYEEQQKIGDFFSEIDRLVEKQSSKVGRLKVRKKELLQKM  407
            G++Q+ ++   ++ I  +LP  EEQQKI +F+  +  +  KQ  K+++LK RKK +LQKM
Sbjct  358  GATQVYINYSSIKLISIQLPLLEEQQKIRGFLEVLSGITTKQLHKIDQLKERKKAFLQKM  417

Query  408  FV  409
            F+
Sbjct  418  FI  419

26) SaurJH9_1859 in NC_009487


> NC_002953_P1|20|G20|49485300|YP_042521.1|Staphylococcus_aureus_subsp._aureus_MSSA476|+|16941..18200|-|SAS0395|restriction 
and modification system specificity protein
Length=419

 Score =  337 bits (1265),  Expect = 8e-94, Method: Compositional matrix adjust.
 Identities = 261/422 (62%), Positives = 329/422 (78%), Gaps = 16/422 (3%)

Query  1    MSNTQTKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60
            MSNTQ KNVPELRFPGFEGEWEEKKLG+LTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR
Sbjct  1    MSNTQKKNVPELRFPGFEGEWEEKKLGDLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60

Query  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120
            NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVE HANLNQHVCI
Sbjct  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVEIHANLNQHVCI  120

Query  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180
            IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG
Sbjct  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180

Query  181  QFFSkldqqieleeqklellqqqkkCYIQKIFSQELRFKDEEGNYYKGWNKKQLKDVLEF  240
            +F+SKLD+QIELEEQKLELLQQQKK Y+QKIFSQELRFKDEEG+ Y +W+ K +++++E 
Sbjct  181  EFISKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRFKDEEGKDYPDWKSKSIQEIFEN  240

Query  241  SNKRTIN-----ENEYPVLTSSRQGLILQSDYYKDR-KTFAESNIGYFILPKNHIT--YR  292
                +++     + +Y V++ +  +  ++S Y  +  +   + +   +IL+K +++    
Sbjct  241  KGGTALETEFNFDGNYKVISIG--SYSINSTYNDQNIRVNKNKKTEKYILSKGDLAMVLN  298

Query  293  SRSDDGIFKFNLNLMIDVGIISKYYP----VFKGIDANQYYLTLHLNYQLKKEYIK-YAT  347
             ++ DG + +  ++ ID +    Y      ++   + ++ +L + +N +L ++ IK    
Sbjct  299  DKTKDGKI-IGRSIFIDKDNQYIYNQRTERLIPFAENDNKFLWFLMNTDLIRNKIKGMMQ  357

Query  348  GTSQLVLSQKDLQNIKTKLPSYEEQQKIGDFFSEIDRLVEKQSSKVGRLKVRKKELLQKM  407
            G++Q+ ++   ++ I  +LP  EEQQKI +F+  +  +  KQ  K+++LK RKK +LQKM
Sbjct  358  GATQVYINYSSIKLISIQLPLLEEQQKIRGFLEVLSGITTKQLHKIDQLKERKKAFLQKM  417

Query  408  FV  409
            F+
Sbjct  418  FI  419

27) SA1625 in NC_002745


> NC_002953_P1|20|G20|49485300|YP_042521.1|Staphylococcus_aureus_subsp._aureus_MSSA476|+|16941..18200|-|SAS0395|restriction 
and modification system specificity protein
Length=419

 Score =  337 bits (1265),  Expect = 8e-94, Method: Compositional matrix adjust.
 Identities = 261/422 (62%), Positives = 329/422 (78%), Gaps = 16/422 (3%)

Query  1    MSNTQTKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60
            MSNTQ KNVPELRFPGFEGEWEEKKLG+LTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR
Sbjct  1    MSNTQKKNVPELRFPGFEGEWEEKKLGDLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60

Query  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120
            NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVE HANLNQHVCI
Sbjct  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVEIHANLNQHVCI  120

Query  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180
            IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG
Sbjct  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180

Query  181  QFFSkldqqieleeqklellqqqkkCYIQKIFSQELRFKDEEGNYYKGWNKKQLKDVLEF  240
            +F+SKLD+QIELEEQKLELLQQQKK Y+QKIFSQELRFKDEEG+ Y +W+ K +++++E 
Sbjct  181  EFISKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRFKDEEGKDYPDWKSKSIQEIFEN  240

Query  241  SNKRTIN-----ENEYPVLTSSRQGLILQSDYYKDR-KTFAESNIGYFILPKNHIT--YR  292
                +++     + +Y V++ +  +  ++S Y  +  +   + +   +IL+K +++    
Sbjct  241  KGGTALETEFNFDGNYKVISIG--SYSINSTYNDQNIRVNKNKKTEKYILSKGDLAMVLN  298

Query  293  SRSDDGIFKFNLNLMIDVGIISKYYP----VFKGIDANQYYLTLHLNYQLKKEYIK-YAT  347
             ++ DG + +  ++ ID +    Y      ++   + ++ +L + +N +L ++ IK    
Sbjct  299  DKTKDGKI-IGRSIFIDKDNQYIYNQRTERLIPFAENDNKFLWFLMNTDLIRNKIKGMMQ  357

Query  348  GTSQLVLSQKDLQNIKTKLPSYEEQQKIGDFFSEIDRLVEKQSSKVGRLKVRKKELLQKM  407
            G++Q+ ++   ++ I  +LP  EEQQKI +F+  +  +  KQ  K+++LK RKK +LQKM
Sbjct  358  GATQVYINYSSIKLISIQLPLLEEQQKIRGFLEVLSGITTKQLHKIDQLKERKKAFLQKM  417

Query  408  FV  409
            F+
Sbjct  418  FI  419

28) SAHV_1792 in NC_009782


> NC_002953_P1|20|G20|49485300|YP_042521.1|Staphylococcus_aureus_subsp._aureus_MSSA476|+|16941..18200|-|SAS0395|restriction 
and modification system specificity protein
Length=419

 Score =  336 bits (1260),  Expect = 2e-93, Method: Compositional matrix adjust.
 Identities = 261/422 (62%), Positives = 328/422 (78%), Gaps = 16/422 (3%)

Query  1    MSNTQTKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60
            MSNTQ KNVPELRFPGFEGEWEEKKLG+LTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR
Sbjct  1    MSNTQKKNVPELRFPGFEGEWEEKKLGDLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60

Query  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120
            NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVE HANLNQHVCI
Sbjct  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVEIHANLNQHVCI  120

Query  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180
            IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG
Sbjct  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180

Query  181  QFFSkldqqieleeqklellqqqkkCYIQKIFSQELRFKDEEGNYYKGWNKKQLKDVLEF  240
            +F+SKLD+QIELEEQKLELLQQQKK Y+QKIFSQELRFKDEEG+ Y +W+ K +++++E 
Sbjct  181  EFISKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRFKDEEGKDYPDWKSKSIQEIFEN  240

Query  241  SNKRTIN-----ENEYPVLISSRQGLILQSDYYKDR-KTFAESNIGYFILPKNHIT--YR  292
                +++     + +Y V+  +  +  ++S Y  +  +   + +   +IL+K +++    
Sbjct  241  KGGTALETEFNFDGNYKVISIG--SYSINSTYNDQNIRVNKNKKTEKYILSKGDLAMVLN  298

Query  293  SRSDDGIFKFNLNLMIDVGIISKYYP----VFKGIDANQYYLTLHLNYQLKKEYIK-YAT  347
             ++ DG + +  ++ ID +    Y      ++   + ++ +L + +N +L ++ IK    
Sbjct  299  DKTKDGKI-IGRSIFIDKDNQYIYNQRTERLIPFAENDNKFLWFLMNTDLIRNKIKGMMQ  357

Query  348  GTSQLVLSQKDLQNIKTKLPSYEEQQKIGDFFSEIDRLVEKQSSKVGRLKVRKKELLQKM  407
            G++Q+ ++   ++ I  +LP  EEQQKI +F+  +  +  KQ  K+++LK RKK +LQKM
Sbjct  358  GATQVYINYSSIKLISIQLPLLEEQQKIRGFLEVLSGITTKQLHKIDQLKERKKAFLQKM  417

Query  408  FV  409
            F+
Sbjct  418  FI  419

29) SAV1807 in NC_002758


> NC_002953_P1|20|G20|49485300|YP_042521.1|Staphylococcus_aureus_subsp._aureus_MSSA476|+|16941..18200|-|SAS0395|restriction 
and modification system specificity protein
Length=419

 Score =  336 bits (1260),  Expect = 2e-93, Method: Compositional matrix adjust.
 Identities = 261/422 (62%), Positives = 328/422 (78%), Gaps = 16/422 (3%)

Query  1    MSNTQTKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60
            MSNTQ KNVPELRFPGFEGEWEEKKLG+LTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR
Sbjct  1    MSNTQKKNVPELRFPGFEGEWEEKKLGDLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60

Query  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120
            NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVE HANLNQHVCI
Sbjct  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVEIHANLNQHVCI  120

Query  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180
            IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG
Sbjct  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180

Query  181  QFFSkldqqieleeqklellqqqkkCYIQKIFSQELRFKDEEGNYYKGWNKKQLKDVLEF  240
            +F+SKLD+QIELEEQKLELLQQQKK Y+QKIFSQELRFKDEEG+ Y +W+ K +++++E 
Sbjct  181  EFISKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRFKDEEGKDYPDWKSKSIQEIFEN  240

Query  241  SNKRTIN-----ENEYPVLISSRQGLILQSDYYKDR-KTFAESNIGYFILPKNHIT--YR  292
                +++     + +Y V+  +  +  ++S Y  +  +   + +   +IL+K +++    
Sbjct  241  KGGTALETEFNFDGNYKVISIG--SYSINSTYNDQNIRVNKNKKTEKYILSKGDLAMVLN  298

Query  293  SRSDDGIFKFNLNLMIDVGIISKYYP----VFKGIDANQYYLTLHLNYQLKKEYIK-YAT  347
             ++ DG + +  ++ ID +    Y      ++   + ++ +L + +N +L ++ IK    
Sbjct  299  DKTKDGKI-IGRSIFIDKDNQYIYNQRTERLIPFAENDNKFLWFLMNTDLIRNKIKGMMQ  357

Query  348  GTSQLVLSQKDLQNIKTKLPSYEEQQKIGDFFSEIDRLVEKQSSKVGRLKVRKKELLQKM  407
            G++Q+ ++   ++ I  +LP  EEQQKI +F+  +  +  KQ  K+++LK RKK +LQKM
Sbjct  358  GATQVYINYSSIKLISIQLPLLEEQQKIRGFLEVLSGITTKQLHKIDQLKERKKAFLQKM  417

Query  408  FV  409
            F+
Sbjct  418  FI  419

30) hsdS in NC_021670


> NC_002953_P1|20|G20|49485300|YP_042521.1|Staphylococcus_aureus_subsp._aureus_MSSA476|+|16941..18200|-|SAS0395|restriction 
and modification system specificity protein
Length=419

 Score =  239 bits (891),  Expect = 2e-64, Method: Compositional matrix adjust.
 Identities = 187/342 (55%), Positives = 248/342 (73%), Gaps = 24/342 (7%)

Query  1    MKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCIIRLKKEYYYNFFGQYLLSR  60
            MKNSRTYYGDVLLNITGASIGRTAINSIVE HANLNQHVCIIRLKKEYYYNFFGQYLLSR
Sbjct  80   MKNSRTYYGDVLLNITGASIGRTAINSIVEIHANLNQHVCIIRLKKEYYYNFFGQYLLSR  139

Query  61   KGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIGKFFSKLDRQIeleeqklel  120
            KGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG F+SKLDRQIELEEQKLEL
Sbjct  140  KGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIGEFISKLDRQIELEEQKLEL  199

Query  121  lqqqkkGYMQKIFTQELRFKDENGEEYPEWENKFIKDI------------FIFENNRRKL  168
            LQQQKKGYMQKIF+QELRFKDE+G +YP+W +K I++I            F F+ N + +
Sbjct  200  LQQQKKGYMQKIFSQELRFKDEEGKDYPDWKSKSIQEIFENKGGTALETEFNFDGNYKVI  259

Query  169  ITSSLREKGLYPYYGATGIIDYVK---DYLFNNEERLLIGEDGAKWGQ-FETSSFIA-NG  223
              +S   ++   Y +    ++  K    Y++++ +  ++ +D +K G+ +  S FI  + 
Sbjct  260  SIGSYSINS--TYNDQNIRVNKNKKTEKYILSKGDLAMVLNDKTKDGKIIGRSIFIDKDN  317

Query  224  QY----WVNNHAHVVKSNDHNL-FFMNYYLNFKELRAFVTGNAPAKLTHANLCNINLKIP  278
            QY    + +       +++  L F+MN  L  + +++ + G +   +  +++  I++++P
Sbjct  318  QYIYNQRTERLIPFAENDNKFLWFLMNTDLIRNKIKGMMQGATQVYINYSSIKLISIQLP  377

Query  279  CLTEQDKVSALLKSIDNKMNNQMNRIELLKERKKGLLQKMFI  320
             L EQ+K+ ++L  +     +Q+++I+ LKERKK++LQKMFI
Sbjct  378  LLEEQQKIRGFLEVLSGITTKQLHKIDQLKERKKAFLQKMFI  419