Homolog Viewer

PAthogenisity Island DataBase (PAI DB)

Home PAIs REIs Genomes Search Links

Homologs of hrpV gene of EF514224

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) Psyr_1202
( YP_234294.1 )

negative regulator of hrp expression HrpV

NC_007005
(Pseudomonas syringae B728a)

4e-48

2) hrpV
( YP_273540.1 )

type III negative regulator of hrp expression HrpV

NC_005773
(Pseudomonas syringae 1448A)

3e-45

3) hrpV
( NP_791218.1 )

negative regulator of hrp expression HrpV

NC_004578
(Pseudomonas syringae DC3000)

3e-41

4) Pmen_0021
( YP_001185528.1 )

hypothetical protein

NC_009439
(Pseudomonas mendocina ymp)

3e-32

5) hrpV
( YP_005210963.1 )

protein HrpV

NC_016830
(Pseudomonas fluorescens F113)

6e-19

• Sequence Alignments

1) Psyr_1202 in NC_007005


> EF514224|20|G17|148562544|ABQ88363.1|Pseudomonas_syringae_pv._syringae_61|-|16499..16846|hrpV|-|HrpV
Length=115

 Score =  183 bits (679),  Expect = 4e-48, Method: Compositional matrix adjust.
 Identities = 113/115 (99%), Positives = 114/115 (99%), Gaps = 0/115 (0%)

Query  1    MIEVEEKTAFYYNVAAQSPAVWPVANGVSFVSRREHHDWGIALHIEGRALRPEQLREALQ  60
            MIEVEEKTAFYYNVAAQSPAVWPVANGVSFVSRREHHDWGIALHIEGRALRPEQLREALQ
Sbjct  1    MIEVEEKTAFYYNVAAQSPAVWPVANGVSFVSRREHHDWGIALHIEGRALRPEQLREALQ  60

Query  61   LRFSEAERFNDYFLFLDMRRDFVVWHAVSDAPHAVTNLDDIRRNELILAGLDHLA  115
            LRFS+AERFNDYFLFLDMRRDFVVWHAVSDAP AVTNLDDIRRNELILAGLDHLA
Sbjct  61   LRFSQAERFNDYFLFLDMRRDFVVWHAVSDAPYAVTNLDDIRRNELILAGLDHLA  115

2) hrpV in NC_005773


> EF514224|20|G17|148562544|ABQ88363.1|Pseudomonas_syringae_pv._syringae_61|-|16499..16846|hrpV|-|HrpV
Length=115

 Score =  174 bits (643),  Expect = 3e-45, Method: Compositional matrix adjust.
 Identities = 103/115 (90%), Positives = 112/115 (98%), Gaps = 0/115 (0%)

Query  1    MIEVKEKAAFYYNVAAQSPAVWPVANGVSFVSRREHHDWGIALHIEGRALRPEQLREALQ  60
            MIEV EK+AFYYNVAAQSPAVWPVANGVSFVSRREHHDWGIALHIEGRALRPEQLREALQ
Sbjct  1    MIEVEEKTAFYYNVAAQSPAVWPVANGVSFVSRREHHDWGIALHIEGRALRPEQLREALQ  60

Query  61   MRFSEAERFRNYFLFLDVQRDFVVWHAVSDAPDAVTNLDDIRRHELMLAGLEHLA  115
            +RFS+AERF +YFLFLD++RDFVVWHAVSDAP AVTNLDDIRR+EL+LAGL+HLA
Sbjct  61   LRFSQAERFNDYFLFLDMRRDFVVWHAVSDAPYAVTNLDDIRRNELILAGLDHLA  115

3) hrpV in NC_004578


> EF514224|20|G17|148562544|ABQ88363.1|Pseudomonas_syringae_pv._syringae_61|-|16499..16846|hrpV|-|HrpV
Length=115

 Score =  161 bits (593),  Expect = 3e-41, Method: Compositional matrix adjust.
 Identities = 91/115 (80%), Positives = 108/115 (94%), Gaps = 0/115 (0%)

Query  1    MIEVTEKSAFYAQVAAQSPAVWPVANGVAFVSRREHHDWGIALHIEGRALRPDQLRDALQ  60
            MIEV EK+AFY +VAAQSPAVWPVANGV+FVSRREHHDWGIALHIEGRALRP+QLR+ALQ
Sbjct  1    MIEVEEKTAFYYNVAAQSPAVWPVANGVSFVSRREHHDWGIALHIEGRALRPEQLREALQ  60

Query  61   RRFMESERFNHYFLFLDVRRDFVVWHAVNEKPGSYASLDDIRRHELMLAGLDHLS  115
             RF ++ERFN+YFLFLD+RRDFVVWHAV++ P + ++LDDIRR+EL+LAGLDHL+
Sbjct  61   LRFSQAERFNDYFLFLDMRRDFVVWHAVSDAPYAVTNLDDIRRNELILAGLDHLA  115

4) Pmen_0021 in NC_009439


> EF514224|20|G17|148562544|ABQ88363.1|Pseudomonas_syringae_pv._syringae_61|-|16499..16846|hrpV|-|HrpV
Length=115

 Score =  130 bits (478),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 69/114 (61%), Positives = 96/114 (85%), Gaps = 0/114 (0%)

Query  1    MKQVSQKLAFYEHVAAERSAVWPVASGVTFVSRREHQDWGIALHVESLAMSPEQLRNALE  60
            M +V +K AFY +VAA+ +AVWPVA+GV+FVSRREH+DWGIALH+E+ A+ PEQLR+AL+
Sbjct  1    MIEVEEKTAFYYNVAAQSPAVWPVANGVSFVSRREHHDWGIALHIEGRALRPEQLREALQ  60

Query  61   RRFVESDRYSDYFLFLNVQQDFVVWHASPDVEGVGDSLDDICREQLQLAGLGHL  114
             RF +++R++DYFLFL++++DFVVWHA +D      +LDDI R++L LAGL+HL
Sbjct  61   LRFSQAERFNDYFLFLDMRRDFVVWHAVSDAPYAVTNLDDIRRNELILAGLDHL  114

5) hrpV in NC_016830


> EF514224|20|G17|148562544|ABQ88363.1|Pseudomonas_syringae_pv._syringae_61|-|16499..16846|hrpV|-|HrpV
Length=115

 Score = 87.0 bits (311),  Expect = 6e-19, Method: Compositional matrix adjust.
 Identities = 46/113 (41%), Positives = 79/113 (70%), Gaps = 0/113 (0%)

Query  7    SVSTRQAFQKNIIAGIATYWEIAPGIEFCLRREPHSVGLALQIQSQALRANQIQHALERR  66
             V  + AF  N+ A  ++ W +A G+ F  RRE H  G+AL+I+++ALR++Q+++AL+ R
Sbjct  3    EVEEKTAFYYNVAAQSPAVWPVANGVSFVSRREHHDWGIALHIEGRALRPEQLREALQLR  62

Query  67   FAQPTDYAQLFVFLDPQRALVVWQALPDAPLSTELLDEIQSRQLSLLGLEDLD  119
            F+Q+  + + F+FLD +R +VVW+A++DAP +   LD+I+  +L L GL++L 
Sbjct  63   FSQAERFNDYFLFLDMRRDFVVWHAVSDAPYAVTNLDDIRRNELILAGLDHLA  115