>AY330644|20|G20|37811905|AAR03970.1|Helicobacter_pylori_Du23:2|+|21457..25005|cagA|HP0547|CagA
Length = 3549
Score = 1546 bits (3989), Expect = 0.0
Identities = 854/955 (89%)
Strand = Plus / Plus
Query: 1637 actcttcaaggtaacctaaagcatgatggcgtgatgtttgtcaattattccaatttcaaa 1696
||||||||||||| |||||| |||||||||||||||||||| ||||||| |||||||||
Sbjct: 1462 actcttcaaggtagcctaaaacatgatggcgtgatgtttgttgattattctaatttcaaa 1521
Query: 1697 tacaccaacgcctccaagagtcctgatgagggtataggcgctacgaatggcgtttcccat 1756
||||||||||||||||||| ||| || ||||| ||||||||||||||||||||||||||
Sbjct: 1522 tacaccaacgcctccaagaatcccaataagggtgtaggcgctacgaatggcgtttcccat 1581
Query: 1757 ttggaagcaaattttagcaaggtggctgtctttaatttgcctgatttaaatggtctcgct 1816
|| || ||| ||| |||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 1582 ttagacgcaggctttgacaaggtagctgtctttaatttgcctgatttaaataatctcgct 1641
Query: 1817 atctctagttttgcaaggcggaatttagaggataaactgatcgctaaaggattgccccca 1876
||| ||||||| | |||||||||||||||||||||||| | | ||||||||||| ||| |
Sbjct: 1642 atcactagtttcgtaaggcggaatttagaggataaactaaccactaaaggattgtcccta 1701
Query: 1877 aaagacgctaataagatcatcaaagactttttgaacagcaacaaggaattgcttgaaaaa 1936
|||| ||||||||| | |||||||| ||||||| ||||||||| |||||| ||| ||||
Sbjct: 1702 caagaagctaataagcttatcaaagattttttgagcagcaacaaagaattggttggaaaa 1761
Query: 1937 gctttagacttcaataaagctgtagctgaagctaaaaatacaggcaattatgacggagtg 1996
|||||| ||||||||||||||||||||| |||||||| |||||||| ||||| | ||||
Sbjct: 1762 gctttaagcttcaataaagctgtagctgacgctaaaaacacaggcaactatgatgaagtg 1821
Query: 1997 aaaaaagctcaaaaagatcttgaaaaatctataaggaaacgagagcgtttagagcaagaa 2056
||| |||||| |||||||||||||||||| ||| ||||||||||| ||||||| |||||
Sbjct: 1822 aaacgagctcagaaagatcttgaaaaatctctaaagaaacgagagcatttagagaaagaa 1881
Query: 2057 ataacgaaaaaatttgagaacaagagcggcaacaaaaataaaatggaagcgaaagttcaa 2116
|| |||||||||| |||| ||| |||||||||||||||||||||||||| |||| ||||
Sbjct: 1882 gtagcgaaaaaattggagagcaaaagcggcaacaaaaataaaatggaagcaaaagctcaa 1941
Query: 2117 gctaacagccaaaaagatgggatttttaagcttatcaatgaagaggctcataaggaagca 2176
||||||||||||||||||| ||||||| | | |||||| |||||||| ||| || |||
Sbjct: 1942 gctaacagccaaaaagatgagatttttgcgttgatcaataaagaggctaatagagacgca 2001
Query: 2177 agaatcgccgcttacgctcagaatcttaaaggcatcaggagggaattgtttgataaagtt 2236
||| |||||||||||||||||||||||||||||| |||||||||| ||||||| ||
Sbjct: 2002 agagcaatcgcttacgctcagaatcttaaaggcatcagaagggaattgtctgataaactt 2061
Query: 2237 aaaaatctcaacaagaatttgaaagactttgataaatcttttgatgcgctcaaaagtggc 2296
||||| |||||||| |||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 2062 gaaaatatcaacaaggatttgaaagactttgataaatcttttgatgaattcaaaaatggc 2121
Query: 2297 aaaaataaggatttcagcaaggcagaagaaacgctaaaagcccttgaaagctcggtgaaa 2356
|||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||
Sbjct: 2122 aaaaataaggatttcagcaaggcagaagaaacactaaaagcccttaaaggctcggtgaaa 2181
Query: 2357 gatttgggtatcaatccagaatggatttcaaaagttgaaaaccttaatgcagctttgaat 2416
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2182 gatttaggtatcaatccagaatggatttcaaaagttgaaaaccttaatgcagctttgaat 2241
Query: 2417 gaattcaaaaatggcaaaaataaggatttcagcaaggtaacacaagcaaaaagcgacctt 2476
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2242 gacttcaaaaatggcaaaaataaggatttcagcaaggtaacgcaagcaaaaagcgacctt 2301
Query: 2477 gaaaattccattaaggatgtgctcatcaatcaagagataacggataaagttgacaatctc 2536
||||||||| |||| |||||| ||||||||||| || |||||||||||||||||||||||
Sbjct: 2302 gaaaattccgttaaagatgtgatcatcaatcaaaaggtaacggataaagttgacaatctc 2361
Query: 2537 aatcaggctgtattaagggctaaagcgataggcgattttagtggggtagagcaag 2591
||||| || |||| || |||||||| ||||||||||| ||||||||||||||||
Sbjct: 2362 aatcaagcggtatcaatagctaaagcaataggcgatttcagtggggtagagcaag 2416
Score = 846 bits (2184), Expect = e-246
Identities = 468/518 (90%)
Strand = Plus / Plus
Query: 56 cggcttttaatccacaacaatttatcaataatcttcaagtggcttttattaaacttgata 115
|||||||||| || || |||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 41 cggcttttaacccgcagcaatttatcaataatcttcaagtggcttttcttaaagttgata 100
Query: 116 gtgctgtcgcttcatttgatcccgatcaaaaaccaatcgttgataagaacgatagggata 175
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 101 acgctgtcgcttcatacgatcctgatcaaaaaccaatcgttgataagaacgatagggata 160
Query: 176 acaggcaagcttttaatgtaatctcgcaattaagggaagaatacgccaataaagcgatca 235
|||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 161 acaggcaagcttttgatggaatctcgcaattaagggaagaatactccaataaagcgatca 220
Query: 236 aaaatcccaccaaaaagaatcagtatttttcagactttatcgataaaagcaatgatttga 295
||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||| | |
Sbjct: 221 aaaatcctaccaaaaagaatcagtatttttcagactttatcaataagagcaatgatctaa 280
Query: 296 tcaacaaaaacgatctcattgatacagattcttccacaaagagctttgaaaaatttgggg 355
|||||||| || ||||||||||| ||| |||||||||||||||||| | ||||||||||
Sbjct: 281 tcaacaaagacaatctcattgatgtagaatcttccacaaagagctttcagaaatttgggg 340
Query: 356 ctcagcgttaccaaatttttatgaattgggtgtcccatcaaaaagatccgtctaaaatca 415
||||||||||| |||||| | | |||||||||||||||||| ||||||||||||||||
Sbjct: 341 atcagcgttaccgaattttcacaagttgggtgtcccatcaaaacgatccgtctaaaatca 400
Query: 416 acacccaaaaaatccgagattttatggaaaatatcatacaaccccctatctctgatgata 475
|||||||| |||| | |||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 401 acacccaatcgatccaaaattttatggaaaatatcatacaaccccctatccctgatgaca 460
Query: 476 aagaaaaagcggagtttttgaggtctgccaaacaatcttttgcaggaattatcataggga 535
|||||||||| |||||||||| |||||||||||||||||||||||||| || |||||||
Sbjct: 461 aagaaaaagcagagtttttgaaatctgccaaacaatcttttgcaggaatcattataggga 520
Query: 536 accaaacccgatcggatgaaaaattcatgggcgttttt 573
| |||| |||| ||||| |||| ||||||||||| |||
Sbjct: 521 atcaaatccgaacggatcaaaagttcatgggcgtgttt 558
Score = 556 bits (1436), Expect = e-159
Identities = 326/366 (89%)
Strand = Plus / Plus
Query: 1269 gaaatgggattaacaaccctagcttctatctctacaaaacagaccaactcacaggcttgg 1328
|||| |||||||| |||||||| || |||||||||||| |||||||||||||||||
Sbjct: 1095 gaaa-gggattaataaccctagtttttatctctacaaagaagaccaactcacaggctcac 1153
Query: 1329 aacaagcgttgagtcaagaagagatccaaaacaaagtggatttcatggaacttcttgcac 1388
||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1154 aacgagcattgagtcaagaagagatccaaaacaaagtggatttcatggaatttcttgcac 1213
Query: 1389 aaaacaacgctagattagataacttgagcgaggaagagaaagaaaagttccaaactgaga 1448
||||||| |||| |||||| |||||||||||| ||||||||||||| |||| ||||||||
Sbjct: 1214 aaaacaatgctaaattagacaacttgagcgagaaagagaaagaaaaattccgaactgaga 1273
Query: 1449 ttggaaatttccaaaaagaccctaaggcttatttagactccctagggaatgatcgcattg 1508
|| |||||||||||||| ||||| ||||||||||| |||||||||||||||| ||||
Sbjct: 1274 ttaaggatttccaaaaagactctaagccttatttagacgccctagggaatgatcgtattg 1333
Query: 1509 cttttgtttctaaaaaagac-caaaagcatttagctttggttactgagtttggtaatggg 1567
|||||||||||||||||||| ||||| |||| |||||| ||||||||||| ||| |||
Sbjct: 1334 cttttgtttctaaaaaagacacaaaa-cattcagctttaattactgagtttaataagggg 1392
Query: 1568 gaattgagctatactctcaaagattatgggaaaaaacaagatagagctttagatagggag 1627
|| |||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 1393 gatttgagctacactctcaaagattatgggaaaaaagcagataaagctttagatagggag 1452
Query: 1628 acaaaa 1633
| ||||
Sbjct: 1453 a-aaaa 1457
Score = 496 bits (1279), Expect = e-140
Identities = 275/305 (90%)
Strand = Plus / Plus
Query: 3016 agcgaaattggacaattacgctactaacagccacacacgcattaatagcaatgtcaaaaa 3075
||||||| | || ||||| ||||||||||||||||||||||||||||||||| || ||||
Sbjct: 3159 agcgaaactagataattatgctactaacagccacacacgcattaatagcaatatccaaaa 3218
Query: 3076 tggaacaatcaatgaaaaagcgatcggcatgctaacgcaaaaaaaccctgagtggctcaa 3135
|||| ||||||| |||||||| | ||||||||||||||||||||||||||||||||| ||
Sbjct: 3219 tggagcaatcaacgaaaaagcaaccggcatgctaacgcaaaaaaaccctgagtggcttaa 3278
Query: 3136 gcttgtgaatgataagatagttgcgcataatgtgggaagcgctcctttgtcaggttatga 3195
||| ||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||
Sbjct: 3279 gctcgtgaatgataagatagttgcgcataatgtaggaagcgttcctttgtcagagtatga 3338
Query: 3196 taaaattggattcaaccaaaagaatatgaaaggttattctgattcgttcaggttttccac 3255
||||||||| |||||||| ||||||||||||| ||||||||||||||||| ||||||| |
Sbjct: 3339 taaaattggcttcaaccagaagaatatgaaagattattctgattcgttcaagttttccgc 3398
Query: 3256 caagttgagcaatgccgtaaaaaacattaagtctgactttaagcaacttttaaccgattg 3315
|||||||| |||||| | |||| |||||||||||| ||||| |||| |||||||| | ||
Sbjct: 3399 caagttgaacaatgctgcaaaagacattaagtctggctttacgcaatttttaacc-aatg 3457
Query: 3316 cattt 3320
|||||
Sbjct: 3458 cattt 3462
Score = 399 bits (1030), Expect = e-111
Identities = 235/270 (87%)
Strand = Plus / Plus
Query: 767 gatgaatctttgaaagagaggcaagaagcacaaaacaatggagagcc---tgttggggat 823
|||||||| |||||||| |||||||||||| |||| ||||||||||| || |||||||
Sbjct: 559 gatgaatccttgaaagaaaggcaagaagcagaaaaaaatggagagcctactggtggggat 618
Query: 824 tggcttgatatttttttatcgtttgtatttaacaaagaacaatcttctgatctcaaagaa 883
||| | |||||||||||||| ||| ||||| ||||| |||||||||||||| ||||||||
Sbjct: 619 tggttggatatttttttatcatttatatttgacaaaaaacaatcttctgatgtcaaagaa 678
Query: 884 acgctcaatcaagagccaaggcctcatgttgaacaaaatgtagcctctacccccacccac 943
| |||||||||| ||| || ||||| ||| | || ||||| ||||| ||||| ||
Sbjct: 679 gcaatcaatcaagaaccagttccccatgtccaaccagatatagccactaccaccaccgac 738
Query: 944 atacaaggcttaccgcctgaagctagggatttgcttgatgaaaggggtgatttttctaaa 1003
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 739 atacaaggcttaccgcctgaatctagggatttgcttgatgaaaggggtaatttttctaaa 798
Query: 1004 ttcactcttggtgatatggaaatgttggat 1033
||||||||||| |||||||||||||| |||
Sbjct: 799 ttcactcttggcgatatggaaatgttagat 828
Score = 380 bits (980), Expect = e-105
Identities = 212/241 (88%)
Strand = Plus / Plus
Query: 2766 atctcggcggatcttcccctttgaaaaggtatgctaaagttgatgatctcagtaaggtag 2825
||||||||||| ||| |||||||| |||| || |||||||||||||||||||||||||||
Sbjct: 2918 atctcggcggacctttccctttgacaaggcattctaaagttgatgatctcagtaaggtag 2977
Query: 2826 ggctttcaagggagcaagaattgaatgagaaaattggcaatctcaatcaggcagtgtcag 2885
||||||||||||| ||| ||||| | ||||||||| |||||||||||| || || ||||
Sbjct: 2978 ggctttcaagggatcaaaaattggctcagaaaattgacaatctcaatcaagcggtatcag 3037
Query: 2886 aagctaaagcaggttcttttggcaacctagaacaaatgatggatggactcaaagattcta 2945
||||||||||||||| ||||||||||||||| |||| ||| || |||||||||||||
Sbjct: 3038 aagctaaagcaggtttttttggcaacctagagcaaacgatagacaatctcaaagattcta 3097
Query: 2946 caaaaaagaatgttgtgaatctatggtttgaaggtgcaagaaaagtgcctattagtttgc 3005
|||||||||||||||||||||||||| ||||| |||||| |||||| ||| |||||||
Sbjct: 3098 caaaaaagaatgttgtgaatctatgggttgaaagtgcaaaaaaagtacctgctagtttgt 3157
Query: 3006 c 3006
|
Sbjct: 3158 c 3158
Score = 353 bits (910), Expect = 2e-97
Identities = 197/227 (87%)
Strand = Plus / Plus
Query: 1034 tacaagttcaaccagttaccgattcacaataacgctctgtcttctatgctaatggggagt 1093
||||||||||| || ||| ||||||||||||||||||||||||| || |||||||||||
Sbjct: 859 tacaagttcaatcaattattgattcacaataacgctctgtcttctgtgttaatggggagt 918
Query: 1094 catagcagcatagaacctgaaaaagtttcattgttgtatggggataatggtggtcctgaa 1153
|||| ||||||||||||||||||||||||||||||||| || ||||||||| || |
Sbjct: 919 cataatggcatagaacctgaaaaagtttcattgttgtatgcgggcaatggtggttttgga 978
Query: 1154 gctaggcatgattggaacgccaccgttggttataaaaaccaacaaggcaacaatgtggcc 1213
|| | ||| ||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 979 gccaagcacgattggaacgccaccgttggttataaagaccaacaaggtaacaatgtggct 1038
Query: 1214 acactcatcaatgcgcatcttaaaaacggcagcgggttagtcatagc 1260
||| | || |||| |||| | ||||||||||| || || ||||||||
Sbjct: 1039 acaataattaatgtgcatatgaaaaacggcagtggcttggtcatagc 1085
Score = 131 bits (337), Expect = 1e-30
Identities = 71/77 (92%)
Strand = Plus / Plus
Query: 2689 ccctttgaaaaggtatgctaaagttgatgatctcagtaaggtagggcaatcagatagccc 2748
||||||||||||| ||| ||||||||||||||||||||||||||||| ||| | ||||||
Sbjct: 2832 ccctttgaaaaggcatgataaagttgatgatctcagtaaggtagggcgatcggttagccc 2891
Query: 2749 tgaacccatttacgcta 2765
|||||||||||| ||||
Sbjct: 2892 tgaacccatttatgcta 2908
Score = 88 bits (228), Expect = 8e-18
Identities = 48/54 (89%)
Strand = Plus / Plus
Query: 3347 gcggaacatggagttaaaaatattaatacaaaaagtggtttccagaaatcttaa 3400
||||| |||||| | |||||| ||||||||||| |||||||||| |||||||||
Sbjct: 3496 gcggagcatggaatcaaaaatgttaatacaaaaggtggtttccaaaaatcttaa 3549
Score = 30 bits (78), Expect = 2e+00
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 1 atggctaacgaaaccat 17
||| |||||||||||||
Sbjct: 1 atgactaacgaaaccat 17
Score = 17 bits (44), Expect = 2e+04
Identities = 9/9 (100%)
Strand = Plus / Plus
Query: 2624 caaaaattg 2632
|||||||||
Sbjct: 2768 caaaaattg 2776
Score = 16 bits (41), Expect = 5e+04
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 2592 agctagcc 2599
||||||||
Sbjct: 2718 agctagcc 2725 |