>AY330639|20|G20|37811837|AAR03909.1|Helicobacter_pylori_Ca73|+|21914..25459|cagA|HP0547|CagA
Length = 3546
Score = 869 bits (2243), Expect = e-253
Identities = 482/538 (90%)
Strand = Plus / Plus
Query: 2081 agcggcaacaaaaataaaatggaagcgaaagttcaagctaacagccaaaaagatgggatt 2140
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 1906 agcggcaacaaaaacaaaatggaagcgaaatctcaagctaacagccaaaaagatgagatt 1965
Query: 2141 tttaagcttatcaatgaagaggctcataaggaagcaagaatcgccgcttacgctcagaat 2200
||| | | |||||| |||||||| ||| ||| |||||| ||||||||||||||||
Sbjct: 1966 tttgcgttgatcaataaagaggctaatagggacgcaagagcaatcgcttacgctcagaat 2025
Query: 2201 cttaaaggcatcaggagggaattgtttgataaagttaaaaatctcaacaagaatttgaaa 2260
|||||||||||||| || ||||||| || ||| || ||||| |||||||||||||||||
Sbjct: 2026 cttaaaggcatcagaagtgaattgtctggtaagcttgaaaatgtcaacaagaatttgaaa 2085
Query: 2261 gactttgataaatcttttgatgcgctcaaaagtggcaaaaataaggatttcagcaaggca 2320
|||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 2086 gactttagtaaatcttttgatgaattcaaaaatggcaaaaataaggatttcagcaaggca 2145
Query: 2321 gaagaaacgctaaaagcccttgaaagctcggtgaaagatttgggtatcaatccagaatgg 2380
||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||
Sbjct: 2146 gaagaaacgctaaaagcccttaaaggctcggtgaaagatttaggtatcaatccagaatgg 2205
Query: 2381 atttcaaaagttgaaaaccttaatgcagctttgaatgaattcaaaaatggcaaaaataag 2440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2206 atttcaaaagttgaaaaccttaatgcagctttgaatgaattcaaaaatggcaaaaataag 2265
Query: 2441 gatttcagcaaggtaacacaagcaaaaagcgaccttgaaaattccattaaggatgtgctc 2500
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 2266 gatttcagcaaggtaacgcaagcaaaaagcgaccttgaaaattccattaaagatgtgatc 2325
Query: 2501 atcaatcaagagataacggataaagttgacaatctcaatcaggctgtattaagggctaaa 2560
||||||||| ||||||||||||||||| ||||||||| | |||||||| | |||||||
Sbjct: 2326 atcaatcaaaagataacggataaagttaacaatctcagttcggctgtatcagtggctaaa 2385
Query: 2561 gcgataggcgattttagtggggtagagcaagagctagccaaactcaaaagcttctcaa 2618
|| | |||||||| ||| |||||||||||| ||||||| ||||||| |||||||
Sbjct: 2386 gcaacgggcgatttcagtagggtagagcaagtgctagccggtctcaaaaatttctcaa 2443
Score = 846 bits (2184), Expect = e-246
Identities = 468/518 (90%)
Strand = Plus / Plus
Query: 56 cggcttttaatccacaacaatttatcaataatcttcaagtggcttttattaaacttgata 115
|||||||||| || || |||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 41 cggcttttaacccgcagcaatttatcaataatcttcaagtggcttttcttaaagttgata 100
Query: 116 gtgctgtcgcttcatttgatcccgatcaaaaaccaatcgttgataagaacgatagggata 175
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 101 acgctgtcgcttcatacgatcctgatcaaaaaccaatcgttgataagaacgatagggata 160
Query: 176 acaggcaagcttttaatgtaatctcgcaattaagggaagaatacgccaataaagcgatca 235
|||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 161 acaggcaagcttttgatggaatctcgcaattaagggaagaatactccaataaagcgatca 220
Query: 236 aaaatcccaccaaaaagaatcagtatttttcagactttatcgataaaagcaatgatttga 295
||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||| | |
Sbjct: 221 aaaatcctaccaaaaagaatcagtatttttcagactttatcaataagagcaatgatctaa 280
Query: 296 tcaacaaaaacgatctcattgatacagattcttccacaaagagctttgaaaaatttgggg 355
|||||||| || ||||||||||| ||| |||||||||||||||||| | ||||||||||
Sbjct: 281 tcaacaaagacaatctcattgatgtagaatcttccacaaagagctttcagaaatttgggg 340
Query: 356 ctcagcgttaccaaatttttatgaattgggtgtcccatcaaaaagatccgtctaaaatca 415
||||||||||| |||||| | | |||||||||||||||||| ||||||||||||||||
Sbjct: 341 atcagcgttaccgaattttcacaagttgggtgtcccatcaaaacgatccgtctaaaatca 400
Query: 416 acacccaaaaaatccgagattttatggaaaatatcatacaaccccctatctctgatgata 475
|||||| | |||||| |||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 401 acacccgatcgatccgaaattttatggaaaatatcatacaaccccctatccctgatgaca 460
Query: 476 aagaaaaagcggagtttttgaggtctgccaaacaatcttttgcaggaattatcataggga 535
|||||||||| |||||||||| |||||||||||||||||||||||||| || |||||||
Sbjct: 461 aagaaaaagcagagtttttgaaatctgccaaacaatcttttgcaggaatcattataggga 520
Query: 536 accaaacccgatcggatgaaaaattcatgggcgttttt 573
| |||| |||| ||||| |||| ||||||||||| |||
Sbjct: 521 atcaaatccgaacggatcaaaagttcatgggcgtgttt 558
Score = 647 bits (1670), Expect = e-186
Identities = 358/406 (88%)
Strand = Plus / Plus
Query: 1637 actcttcaaggtaacctaaagcatgatggcgtgatgtttgtcaattattccaatttcaaa 1696
||||||||||||| |||||| |||||||||||||||||| | ||||||| |||||||||
Sbjct: 1462 actcttcaaggtagcctaaaacatgatggcgtgatgtttattgattattctaatttcaaa 1521
Query: 1697 tacaccaacgcctccaagagtcctgatgagggtataggcgctacgaatggcgtttcccat 1756
||||||||||||||||||| ||| || ||||| ||||| ||||||||||||||||||||
Sbjct: 1522 tacaccaacgcctccaagaatcccaataagggtgtaggcactacgaatggcgtttcccat 1581
Query: 1757 ttggaagcaaattttagcaaggtggctgtctttaatttgcctgatttaaatggtctcgct 1816
|| |||||| |||| |||||| |||||||||||||||||| || ||||| ||| ||
Sbjct: 1582 ttagaagcaggctttaacaaggtagctgtctttaatttgcctagttcaaatgaactcact 1641
Query: 1817 atctctagttttgcaaggcggaatttagaggataaactgatcgctaaaggattgccccca 1876
||| || ||||||||| ||||||||||||||||||||| |||||||||||| |||||
Sbjct: 1642 atcactggttttgcaaagcggaatttagaggataaactagccgctaaaggattttcccca 1701
Query: 1877 aaagacgctaataagatcatcaaagactttttgaacagcaacaaggaattgcttgaaaaa 1936
|||| ||||||||| |||||||||||||||||| ||||||||||||||| ||| ||||
Sbjct: 1702 caagaagctaataagttcatcaaagactttttgagtagcaacaaggaattggttggaaaa 1761
Query: 1937 gctttagacttcaataaagctgtagctgaagctaaaaatacaggcaattatgacggagtg 1996
|||||| | |||||||||| |||||||||||||||||| |||||||| ||||| | ||||
Sbjct: 1762 gctttaaatttcaataaagttgtagctgaagctaaaaacacaggcaactatgatgaagtg 1821
Query: 1997 aaaaaagctcaaaaagatcttgaaaaatctataaggaaacgagagc 2042
||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 1822 aaaaaagctcagaaagatcttgaaaaatctctaaggaaacgagagc 1867
Score = 517 bits (1333), Expect = e-147
Identities = 276/295 (94%)
Strand = Plus / Plus
Query: 3016 agcgaaattggacaattacgctactaacagccacacacgcattaatagcaatgtcaaaaa 3075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3153 agcgaaattggacaattacgctactaacagccacacacgcattaatagcaatgtcaaaaa 3212
Query: 3076 tggaacaatcaatgaaaaagcgatcggcatgctaacgcaaaaaaaccctgagtggctcaa 3135
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 3213 tggaacaatcaatgaaaaagtgaccggcatgctaacgcaaaaaaaccctgagtggctcaa 3272
Query: 3136 gcttgtgaatgataagatagttgcgcataatgtgggaagcgctcctttgtcaggttatga 3195
||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 3273 gctcgtgaatgataagatagttgcacataatgtgggaagcgctcctttgtcagagtatga 3332
Query: 3196 taaaattggattcaaccaaaagaatatgaaaggttattctgattcgttcaggttttccac 3255
||||||||| |||||||| || |||||||||| |||||||||||| |||| |||||||||
Sbjct: 3333 taaaattggcttcaaccagaaaaatatgaaagattattctgattcattcaagttttccac 3392
Query: 3256 caagttgagcaatgccgtaaaaaacattaagtctgactttaagcaacttttaacc 3310
|| |||||||||||| |||||| |||||||||||| |||| |||| ||||||||
Sbjct: 3393 caggttgagcaatgctgtaaaagacattaagtctggctttgtgcaatttttaacc 3447
Score = 416 bits (1075), Expect = e-116
Identities = 240/270 (89%)
Strand = Plus / Plus
Query: 767 gatgaatctttgaaagagaggcaagaagcacaaaacaatggagagcc---tgttggggat 823
|||||||| |||||||| |||||||||||| |||| ||||||||||| || |||||||
Sbjct: 559 gatgaatccttgaaagaaaggcaagaagcagaaaaaaatggagagcctactggtggggat 618
Query: 824 tggcttgatatttttttatcgtttgtatttaacaaagaacaatcttctgatctcaaagaa 883
||| | |||||||||||||| ||||| || |||||| |||||||||| ||||||||||||
Sbjct: 619 tggttggatatttttttatcatttgtgttcaacaaaaaacaatcttccgatctcaaagaa 678
Query: 884 acgctcaatcaagagccaaggcctcatgttgaacaaaatgtagcctctacccccacccac 943
|||||||||||||| ||| |||||||| ||| | |||||||| ||||| ||||| ||
Sbjct: 679 acgctcaatcaagaaccagttcctcatgtccaaccagatgtagccactaccaccaccgac 738
Query: 944 atacaaggcttaccgcctgaagctagggatttgcttgatgaaaggggtgatttttctaaa 1003
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 739 atacaaggcttaccgcctgaatctagggatttgcttgatgaaaggggtaatttttctaaa 798
Query: 1004 ttcactcttggtgatatggaaatgttggat 1033
||||||||||| |||||||||||||| |||
Sbjct: 799 ttcactcttggcgatatggaaatgttagat 828
Score = 386 bits (996), Expect = e-107
Identities = 207/227 (91%)
Strand = Plus / Plus
Query: 1034 tacaagttcaaccagttaccgattcacaataacgctctgtcttctatgctaatggggagt 1093
|||||||||||||| ||| ||||||||||||||||||||||||| || |||||||||||
Sbjct: 859 tacaagttcaaccaattattgattcacaataacgctctgtcttctgtgttaatggggagt 918
Query: 1094 catagcagcatagaacctgaaaaagtttcattgttgtatggggataatggtggtcctgaa 1153
|||| ||||||||||||||||||||||||| |||||||| | |||||||| ||||||
Sbjct: 919 cataatggcatagaacctgaaaaagtttcattattgtatggaaacaatggtggccctgaa 978
Query: 1154 gctaggcatgattggaacgccaccgttggttataaaaaccaacaaggcaacaatgtggcc 1213
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 979 gctaggcatgattggaacgccaccgttggttataaaaaccaacaaggcgacaatgtggct 1038
Query: 1214 acactcatcaatgcgcatcttaaaaacggcagcgggttagtcatagc 1260
|||||||| |||| |||| | ||||||||||| ||||||||||||||
Sbjct: 1039 acactcattaatgtgcatatgaaaaacggcagtgggttagtcatagc 1085
Score = 351 bits (905), Expect = 8e-97
Identities = 197/225 (88%)
Strand = Plus / Plus
Query: 2782 ccctttgaaaaggtatgctaaagttgatgatctcagtaaggtagggctttcaagggagca 2841
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 2928 ccctttgaaaaggcatgataaagttgatgatctcagtaaggtagggctttcaaggaatca 2987
Query: 2842 agaattgaatgagaaaattggcaatctcaatcaggcagtgtcagaagctaaagcaggttc 2901
|||||||| | ||||||||| |||||||||||| || || |||||||||||||||||||
Sbjct: 2988 agaattgactcagaaaattgacaatctcaatcaagcggtatcagaagctaaagcaggttt 3047
Query: 2902 ttttggcaacctagaacaaatgatggatggactcaaagattctacaaaaaagaatgttgt 2961
||||||||| ||||| |||| ||| || |||||||||||||||||| | ||||| ||
Sbjct: 3048 ttttggcaatctagagcaaacgatagacaagctcaaagattctacaaaacacaatgtcgt 3107
Query: 2962 gaatctatggtttgaaggtgcaagaaaagtgcctattagtttgcc 3006
|||||||||| ||||| |||||| |||||||||| ||||||| |
Sbjct: 3108 gaatctatgggttgaaagtgcaaaaaaagtgcctgctagtttgtc 3152
Score = 260 bits (670), Expect = 2e-69
Identities = 156/171 (91%)
Strand = Plus / Plus
Query: 1464 aagaccctaaggcttatttagactccctagggaatgatcgcattgcttttgtttctaaaa 1523
||||| |||| |||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 1289 aagactctaaagcttatttagacgccctagggaatgatcgtattgcttttgtttctaaaa 1348
Query: 1524 aagac-caaaagcatttagctttggttactgagtttggtaatggggaattgagctatact 1582
||||| ||||| |||| |||||| |||||||||||||||||||||| |||||||| |||
Sbjct: 1349 aagacacaaaa-cattcagctttaattactgagtttggtaatggggatttgagctacact 1407
Query: 1583 ctcaaagattatgggaaaaaacaagatagagctttagatagggagacaaaa 1633
||||||||||||||||||||| ||||| ||||||||||||||||| ||||
Sbjct: 1408 ctcaaagattatgggaaaaaagcagataaagctttagatagggaga-aaaa 1457
Score = 256 bits (660), Expect = 3e-68
Identities = 146/166 (88%)
Strand = Plus / Plus
Query: 1269 gaaatgggattaacaaccctagcttctatctctacaaaacagaccaactcacaggcttgg 1328
|||| ||||||||||||||||| || || ||||||||| |||||||||||||||||
Sbjct: 1095 gaaa-gggattaacaaccctagtttttacctctacaaagaagaccaactcacaggctcac 1153
Query: 1329 aacaagcgttgagtcaagaagagatccaaaacaaagtggatttcatggaacttcttgcac 1388
||| ||| ||||||||| ||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 1154 aacgagcattgagtcaaaaagagatccaaaacaaagtagatttcatggaatttcttgcac 1213
Query: 1389 aaaacaacgctagattagataacttgagcgaggaagagaaagaaaa 1434
|||||| |||| |||||| |||||||||| | |||||||||||||
Sbjct: 1214 gaaacaatgctaaattagacaacttgagcgtgaaagagaaagaaaa 1259
Score = 127 bits (328), Expect = 2e-29
Identities = 71/77 (92%)
Strand = Plus / Plus
Query: 2689 ccctttgaaaaggtatgctaaagttgatgatctcagtaaggtagggcaatcagatagccc 2748
||||||||||||| ||| ||||||||||||||||||||||||||||| |||| || |||
Sbjct: 2826 ccctttgaaaaggcatgataaagttgatgatctcagtaaggtagggctttcagctaaccc 2885
Query: 2749 tgaacccatttacgcta 2765
|||||||||||||||||
Sbjct: 2886 tgaacccatttacgcta 2902
Score = 37 bits (94), Expect = 3e-02
Identities = 20/22 (91%)
Strand = Plus / Plus
Query: 2635 tcaaaaaaatgaaagtttcaat 2656
||||||||||||| |||||||
Sbjct: 2466 tcaaaaaaatgaagatttcaat 2487
Score = 30 bits (78), Expect = 2e+00
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 1 atggctaacgaaaccat 17
||| |||||||||||||
Sbjct: 1 atgactaacgaaaccat 17
Score = 17 bits (44), Expect = 2e+04
Identities = 9/9 (100%)
Strand = Plus / Plus
Query: 2064 aaaaatttg 2072
|||||||||
Sbjct: 1888 aaaaatttg 1896
Score = 13 bits (35), Expect = 3e+05
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1457 ttccaaa 1463
|||||||
Sbjct: 1261 ttccaaa 1267 |