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Homologs of cagA gene of AY330637

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) K750_05020
( YP_007982353.1 )

cytochrome C oxidase subunit II

NC_021217
(Helicobacter pylori UM037)

0.0

2) cagA
( YP_002301189.1 )

cytotoxin-associated protein A

NC_011498
(Helicobacter pylori P12)

0.0

3) HPAG1_0524
( YP_627265.1 )

cytotoxin-associated protein A

NC_008086
(Helicobacter pylori HPAG1)

0.0

4) HPELS_03850
( YP_005424890.1 )

cag pathogenicity island protein (cag26)

NC_017063
(Helicobacter pylori ELS37)

0.0

5) HP0547
( NP_207343.1 )

cag pathogenicity island protein (cag26)

NC_000915
(Helicobacter pylori 26695)

0.0

6) C694_02825
( YP_006934471.1 )

cag pathogenicity island protein (cag26)

NC_018939
(Helicobacter pylori 26695)

0.0

7) C695_02825
( YP_006893036.1 )

cag pathogenicity island protein (cag26)

NC_018937
(Helicobacter pylori Rif1)

0.0

8) C730_02825
( YP_006936077.1 )

cag pathogenicity island protein (cag26)

NC_018938
(Helicobacter pylori Rif2)

0.0

9) HPSJM_02765
( YP_003928464.1 )

cag pathogenicity island protein (cag26)

NC_014560
(Helicobacter pylori SJM180)

0.0

10) HPPC_02715
( YP_003926831.1 )

cytotoxin-associated protein A

NC_014555
(Helicobacter pylori PeCan4)

0.0

11) HPSNT_02820
( YP_005786704.1 )

cytotoxin-associated protein A

NC_017376
(Helicobacter pylori Santal49)

0.0

12) HPIN_04145
( YP_005782140.1 )

cytotoxin-associated protein A

NC_017372
(Helicobacter pylori India7)

0.0

13) cagA
( YP_002266135.1 )

cytotoxin-associated protein A

NC_011333
(Helicobacter pylori G27)

0.0

14) hp2017_0529
( YP_005783518.1 )

cag island protein

NC_017374
(Helicobacter pylori 2017)

0.0

15) hp2018_0531
( YP_005791362.1 )

cag island protein

NC_017381
(Helicobacter pylori 2018)

0.0

16) cagA
( YP_005765053.1 )

cag island protein

NC_017357
(Helicobacter pylori 908)

0.0

17) HPGAM_02795
( YP_005780282.1 )

cytotoxin-associated protein A

NC_017371
(Helicobacter pylori Gambia94/24)

0.0

18) cagA
( NP_223213.1 )

cag island protein, cytotoxicity associated immunodominant antigen

NC_000921
(Helicobacter pylori J99)

0.0

19) HPLT_02705
( YP_005772684.1 )

cytotoxin-associated protein A

NC_017362
(Helicobacter pylori Lithuania75)

0.0

20) cagA
( YP_007538420.1 )

cag pathogenicity island protein

NC_020509
(Helicobacter pylori OK310)

0.0

21) HPPN135_02705
( YP_005789758.1 )

cag pathogenicity island protein

NC_017379
(Helicobacter pylori Puno135)

0.0

22) cagA
( YP_003728762.1 )

cytotoxin-associated protein A

NC_014256
(Helicobacter pylori B8)

0.0

23) HPSAT_04065
( YP_005768457.1 )

cag pathogenicity island protein (cagA, cag26)

NC_017359
(Helicobacter pylori Sat464)

0.0

24) cagA
( YP_007536679.1 )

cag pathogenicity island protein

NC_020508
(Helicobacter pylori OK113)

0.0

25) HPSH417_02620
( YP_006224171.1 )

cag pathogenicity island protein CagA

NC_017739
(Helicobacter pylori Shi417)

0.0

26) MWE_0973
( YP_006338465.1 )

cytotoxin-associated protein A

NC_017926
(Helicobacter pylori XZ274)

0.0

27) HPSH169_02815
( YP_006225755.1 )

cag pathogenicity island protein CagA

NC_017740
(Helicobacter pylori Shi169)

0.0

28) cagA
( YP_005775747.1 )

cag pathogenicity island protein

NC_017366
(Helicobacter pylori F32)

0.0

29) cagA
( YP_005774524.1 )

cag pathogenicity island protein

NC_017365
(Helicobacter pylori F30)

0.0

30) HMPREF0462_0869
( YP_005785436.1 )

cytotoxicity-associated immunodominantigen

NC_017375
(Helicobacter pylori 83)

0.0

31) HPPN120_02680
( YP_005788210.1 )

cag pathogenicity island protein (cagA, cag26)

NC_017378
(Helicobacter pylori Puno120)

0.0

32) K751_03370
( YP_007983654.1 )

cytochrome C oxidase subunit II

NC_021218
(Helicobacter pylori UM066)

0.0

33) cagA
( YP_005770141.1 )

cytotoxicity-associated immunodominant antigen A

NC_017360
(Helicobacter pylori 35A)

0.0

34) cag26
( YP_005793164.1 )

cag pathogenicity island protein A

NC_017382
(Helicobacter pylori 51)

0.0

35) cagA
( YP_005779046.1 )

cag pathogenicity island protein

NC_017368
(Helicobacter pylori F16)

0.0

36) HPKB_0795
( YP_005762303.1 )

cytotoxin-associated protein A

NC_017354
(Helicobacter pylori 52)

0.0

37) cagA
( YP_005777288.1 )

cag pathogenicity island protein

NC_017367
(Helicobacter pylori F57)

0.0

38) HPSH_04145
( YP_001910294.1 )

cag pathogenicity island protein CagA

NC_010698
(Helicobacter pylori Shi470)

0.0

39) HPV225_0552
( YP_005763483.1 )

Cytotoxicity-associated immunodominant antigen

NC_017355
(Helicobacter pylori v225d)

0.0

40) HPPC18_02620
( YP_006228790.1 )

cag pathogenicity island protein CagA

NC_017742
(Helicobacter pylori PeCan18)

0.0

41) K747_06810
( YP_007979549.1 )

cytochrome C oxidase subunit II

NC_021215
(Helicobacter pylori UM032)

0.0

42) K748_08050
( YP_008337464.1 )

cytochrome C oxidase subunit II

NC_021882
(Helicobacter pylori UM298)

0.0

43) K749_01445
( YP_007980086.1 )

cytochrome C oxidase subunit II

NC_021216
(Helicobacter pylori UM299)

0.0

44) HPSH417_04540
( YP_006224537.1 )

cag pathogenicity island protein CagA

NC_017739
(Helicobacter pylori Shi417)

0.0

45) HPSH169_04745
( YP_006226126.1 )

cag pathogenicity island protein CagA

NC_017740
(Helicobacter pylori Shi169)

0.0

46) HPSH_04215
( YP_001910308.1 )

cag pathogenicity island protein CagA

NC_010698
(Helicobacter pylori Shi470)

0.0

47) HPSH112_04285
( YP_006227551.1 )

cag pathogenicity island protein CagA

NC_017741
(Helicobacter pylori Shi112)

0.0

• Sequence Alignments

1) K750_05020 in NC_021217


> AY330637|20|G20|37811806|AAR03881.1|Helicobacter_pylori_Ca52|+|21859..25455|cagA|HP0547|CagA
Length=1198

 Score = 1720 bits (6531),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1116/1182 (95%), Positives = 1161/1182 (99%), Gaps = 2/1182 (0%)

Query  1     MTNETINQQPQTEAAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNRQAFDG  60
             MTNETINQQPQTEAAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNRQAF+G
Sbjct  17    MTNETINQQPQTEAAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNRQAFEG  76

Query  61    ISQLREEYSNKAIKNPTKKNQYFSDFINKSNDLINKDALIDVESSTKSFQKFGDQRYRIF  120
             ISQLREEYSNKAIKNPTKKNQYFSDFI+KSNDLINKD L+DVESSTKSFQKFGDQRY+IF
Sbjct  77    ISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNLVDVESSTKSFQKFGDQRYQIF  136

Query  121   TSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQSFAGIIIGNQIRTDQ  180
             TSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQ+FAGIIIGNQIRTDQ
Sbjct  137   TSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQAFAGIIIGNQIRTDQ  196

Query  181   KFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSFIFDKKQSSDVKEAINQEPVPHVQPDI  240
             KFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSF+F+KKQSSD+KE+++QEPVPHVQPDI
Sbjct  197   KFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSFVFNKKQSSDLKETLDQEPVPHVQPDI  256

Query  241   ATTTTHIQGLPPESRDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALS  300
             ATTTT+IQGLPPE+RDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALS
Sbjct  257   ATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALS  316

Query  301   SVLMGSHNGIEPEKVSLLYAGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKNGSGLV  360
             SVLMGSHNGIEPEKVSLLY+GNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKNGSGLV
Sbjct  317   SVLMGSHNGIEPEKVSLLYGGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKNGSGLV  376

Query  361   IAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIRNKIDFMEFLAQNNAKLDNLSVKEKEK  420
             IAGGEKGINNPSFYLYKEDQLTGSQRALSQEEI+NKI+FMEFLAQNNAKLDNLS KEKEK
Sbjct  377   IAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKINFMEFLAQNNAKLDNLSEKEKEK  436

Query  421   FQNEIEDFQKDSKAYLDALGNDRIAFVSKKDPKHSALITEFGNGDLSYTLKDYGKKADKA  480
             F+ EIEDFQKDSKAYLDALGNDRIAFVSKKD KHSALITEFGNGDLSYTLKDYGKKADKA
Sbjct  437   FRTEIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGKKADKA  496

Query  481   LDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGATNGVSHLEAGFDKVAIFNL  540
             LDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVG TNGVSHLEAGFDKVA+FNL
Sbjct  497   LDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFDKVAVFNL  556

Query  541   PDLNNLAITSFVRRNLEDKLATKGLSLQEANKLIKDFLSSNKELVGKALNFNKAVAEAKN  600
             PDLNNLAITSFVRRNLEDKLATKGLSLQEANKLIKDFL+SNKELVGKALNFNKAVAEAKN
Sbjct  557   PDLNNLAITSFVRRNLEDKLATKGLSLQEANKLIKDFLNSNKELVGKALNFNKAVAEAKN  616

Query  601   TGNYDEVKRAQKDLEKSLRRREHLEKNVAKNLESKSGNKNKMEAKAQANSQKDEIFALIN  660
             TGNYDEVK+AQKDLEKSL++REHLEK+VAK+LESKSGNKNKMEAK+QANSQKDEIFALIN
Sbjct  617   TGNYDEVKKAQKDLEKSLKKREHLEKEVAKKLESKSGNKNKMEAKSQANSQKDEIFALIN  676

Query  661   KEANRDARAIAYAQNLKGIKRELSDKLENVNKNLKDFSESFDEFKNGKNKDFSKAEETLK  720
             KEANRDARAIAYAQNLKGIKRELSDKLEN+NK+LKDFS SFDEFKNGKNKDFSKAEETLK
Sbjct  677   KEANRDARAIAYAQNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKAEETLK  736

Query  721   ALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSVKDVIINQKV  780
             ALKGSVKDLGINPEWISKVENLN+ALNEFKNGKNKDFSKVTQAKSDLENS+KDVIINQK+
Sbjct  737   ALKGSVKDLGINPEWISKVENLNTALNEFKNGKNKDFSKVTQAKSDLENSIKDVIINQKI  796

Query  781   TDKVDNLSSAVSVAKATGDFSRVNQALADLKNFSKEQLAQQAQKNEDFNTGKNSALYQSV  840
             TDKVDNL+ AVS+AKATGDFS V+QALADLKNFSK QLAQQAQKNEDFNTGKNS +YQSV
Sbjct  797   TDKVDNLNQAVSIAKATGDFSGVEQALADLKNFSKGQLAQQAQKNEDFNTGKNSEIYQSV  856

Query  841   KngvngtlvgnglSKAEATTLSKNFSDIKKElnaklgnfnnnnnnglknEPIYAKVNKKK  900
             KNGVNGTLVGNGLSKAEATTLSKNFSDIKKEL+AKLGNFNNNNNNGLKNEPIYAKVNKKK
Sbjct  857   KNGVNGTLVGNGLSKAEATTLSKNFSDIKKELEAKLGNFNNNNNNGLKNEPIYAKVNKKK  916

Query  901   TEQAASPEEPIYAQVAKKVNAKIDRLNQIASGLGGVGQAVGFPLKRHDKVDDLSKVGLSA  960
             + QAASPEEPIYAQVAKKVNAKIDRLNQIASGLGGVGQA GFPLKRHDKVDDLSKVGLSA
Sbjct  917   AGQAASPEEPIYAQVAKKVNAKIDRLNQIASGLGGVGQAAGFPLKRHDKVDDLSKVGLSA  976

Query  961   SPEPIYATIDDLGGPFPLKRHSKVDDLGKVGLSRNQELAQKIDNLNQAVSEAKAGFFGNL  1020
             + EPIYATIDDLGG+FPLKRH KVDDL+KVGLSRNQELAQKIDNLNQAVSEAKAGFFGNL
Sbjct  977   NHEPIYATIDDLGGSFPLKRHDKVDDLSKVGLSRNQELAQKIDNLNQAVSEAKAGFFGNL  1036

Query  1021  EQTIDNLKDSAKNNPVNLWAESAKKVPASLSAKLDNYATNSHTRINSNIKNGAINEKATG  1080
             EQTIDNLKDS+K N+VNLWAESAKKVPASLSAKLDNYA NSHTRINSN+KNGAINEKATG
Sbjct  1037  EQTIDNLKDSTKYNSVNLWAESAKKVPASLSAKLDNYAINSHTRINSNVKNGAINEKATG  1096

Query  1081  MLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFSTKLNNAAKDI  1140
             MLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFSTKLNNA KD 
Sbjct  1097  MLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDT  1156

Query  1141  KSGFTQFLTNAFSTG--YYCLAGENAEHGIKNVNTKGGFQKS  1180
             KSGFT+FL+NAFST+  YY LAGENAEHGIKNVNTKGGFQKS
Sbjct  1157  KSGFTRFLANAFSTASYYYFLAGENAEHGIKNVNTKGGFQKS  1198

2) cagA in NC_011498


> AY330637|20|G20|37811806|AAR03881.1|Helicobacter_pylori_Ca52|+|21859..25455|cagA|HP0547|CagA
Length=1198

 Score = 1695 bits (6437),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1119/1216 (93%), Positives = 1163/1216 (96%), Gaps = 36/1216 (2%)

Query  1     MTNETINQQPQTEAAFNPQQFINNLQVAFLKVNNAVASYDPDQKPIVDKNDRDNRQAFDG  60
             MTNETINQQPQTEAAFNPQQFINNLQVAFLKV+NAVASYDPDQKPIVDKNDRDNRQAF+G
Sbjct  17    MTNETINQQPQTEAAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNRQAFEG  76

Query  61    ISQLKEEYSNKAIKNPTKKNQYFSDFINKSNDLINKDNLIDVESSTKSFQKFGDQRYQIF  120
             ISQL+EEYSNKAIKNPTKKNQYFSDFI+KSNDLINKDNL+DVESSTKSFQKFGDQRYQIF
Sbjct  77    ISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNLVDVESSTKSFQKFGDQRYQIF  136

Query  121   TSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQSFAGIIIGNQIRTDQ  180
             TSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQ+FAGIIIGNQIRTDQ
Sbjct  137   TSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQAFAGIIIGNQIRTDQ  196

Query  181   KFMGVFDESLKERQEAEKNGEPTGGDWLDIFLSFIFDKKQSSDVKEAINQEPVPHVQPDI  240
             KFMGVFDESLKERQEAEKNG PTGGDWLDIFLSF+F+KKQSSD+KE+++QEPVPHVQPDI
Sbjct  197   KFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSFVFNKKQSSDLKETLDQEPVPHVQPDI  256

Query  241   ATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNTLS  300
             ATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNN+LS
Sbjct  257   ATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALS  316

Query  301   SVLMGSHDGIEPEKVSLLYAGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKNGSGLV  360
             SVLMGSH+GIEPEKVSLLY+GNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKNGSGLV
Sbjct  317   SVLMGSHNGIEPEKVSLLYGGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKNGSGLV  376

Query  361   IAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIRNKIDFMELLAQNNAKLDNLSEKEKEK  420
             IAGGEKGINNPSFYLYKEDQLTGSQRALSQEEI+NKI+FME+LAQNNAKLDNLSEKEKEK
Sbjct  377   IAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKINFMEFLAQNNAKLDNLSEKEKEK  436

Query  421   FQNEIKDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGKKADKA  480
             F+ EI DFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGKKADKA
Sbjct  437   FRTEIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGKKADKA  496

Query  481   LDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFDKVAVFNL  540
             LDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFDKVAVFNL
Sbjct  497   LDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFDKVAVFNL  556

Query  541   PDLNNLAITSFVRRNLEDKLVTKGLSIQEANKLIKDFLNSNKELVGKALNFNKAVADAKN  600
             PDLNNLAITSFVRRNLEDKL TKGLS+QEANKLIKDFLNSNKELVGKALNFNKAVA+AKN
Sbjct  557   PDLNNLAITSFVRRNLEDKLATKGLSLQEANKLIKDFLNSNKELVGKALNFNKAVAEAKN  616

Query  601   TGNYDEVKKAQKDLEKSLKKREHLEKEVAKNLESKSGNKNKMEAKSQANSQKDEIFALIN  660
             TGNYDEVKKAQKDLEKSLKKREHLEKEVAK+LESKSGNKNKMEAKSQANSQKDEIFALIN
Sbjct  617   TGNYDEVKKAQKDLEKSLKKREHLEKEVAKKLESKSGNKNKMEAKSQANSQKDEIFALIN  676

Query  661   KEANRDARAIAYAQNLKGIKMELSDKLENVNKNLKDFSKSFDEFKNGKNKDFSKAEETLK  720
             KEANRDARAIAYAQNLKGIK ELSDKLEN+NK+LKDFSKSFDEFKNGKNKDFSKAEETLK
Sbjct  677   KEANRDARAIAYAQNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKAEETLK  736

Query  721   ALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVAQAKSDLENSVKDVIINQKI  780
             ALKGSVKDLGINPEWISKVENLN+ALNEFKNGKNKDFSKV+QAKSDLENS+KDVIINQKI
Sbjct  737   ALKGSVKDLGINPEWISKVENLNTALNEFKNGKNKDFSKVTQAKSDLENSIKDVIINQKI  796

Query  781   TDKVDNLNQAVSVAKATGDFSRVEQALADLKNFSKEQLAQQAQKNEDFNTGKNSALYQSV  840
             TDKVDNLNQAVS+AKATGDFS VEQALADLKNFSK QLAQQAQKNEDFNTGKNS +YQSV
Sbjct  797   TDKVDNLNQAVSIAKATGDFSGVEQALADLKNFSKGQLAQQAQKNEDFNTGKNSEIYQSV  856

Query  841   KngvngtlvgnglSKAEATTLSKNFSDIKKElnaklgnfnnnnnnglknEPIYAKVNKKK  900
             KNGVNGTLVGNGLSKAEATTLSKNFSDIKKEL+AKLGNFNNNNNNGLKNEPIYAKVNKKK
Sbjct  857   KNGVNGTLVGNGLSKAEATTLSKNFSDIKKELEAKLGNFNNNNNNGLKNEPIYAKVNKKK  916

Query  901   TGQAASHEEPIYAQVAKKVNAKIDRLNQIASGLGGVGQAAGFPLKKHDKVEDLSKVGLSA  960
             +GQAAS EEPIYAQVAKKVNAKIDRLNQIASGLGGVGQAAGFPLK+HDKV+DLSKVGLSA
Sbjct  917   AGQAASPEEPIYAQVAKKVNAKIDRLNQIASGLGGVGQAAGFPLKRHDKVDDLSKVGLSA  976

Query  961   SPEPIYATIDDLGGPFPLKKHDKVEDLSKVGLSASPEPIYATIDDLGGPFPLKKHDKVED  1020
             + EPIYATIDDLGG+FPLK+HDKV+DLSKVGL                            
Sbjct  977   NHEPIYATIDDLGGSFPLKRHDKVDDLSKVGL----------------------------  1008

Query  1021  LSKVGLSRNQKLAQKIDNLNQAVSEAKAGFFGNLEQTIDKLKDSTKYNPVNLWVESAKKV  1080
                   SRNQ LAQKIDNLNQAVSEAKAGFFGNLEQTID+LKDSTKYN+VNLW ESAKKV
Sbjct  1009  ------SRNQELAQKIDNLNQAVSEAKAGFFGNLEQTIDNLKDSTKYNSVNLWAESAKKV  1062

Query  1081  PASLSAKLDNYATNSHTRINSNIKNGAINEKATGMLAQKNPEWLKLVNDKIVAHNVGSVP  1140
             PASLSAKLDNYA NSHTRINSN+KNGAINEKATGML+QKNPEWLKLVNDKIVAHNVGSVP
Sbjct  1063  PASLSAKLDNYAINSHTRINSNVKNGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGSVP  1122

Query  1141  LLEYDKIGFNQKNMKDYSDSFKFSTNLNNAVKDIKSGFTQFLANAFSTG--YYCLARENA  1198
             L EYDKIGFNQKNMKDYSDSFKFST+LNNAVKD KSGFT+FLANAFST+  YY LA ENA
Sbjct  1123  LSEYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDTKSGFTRFLANAFSTASYYYFLAGENA  1182

Query  1199  EHGIKNVNTKGGFQKS  1214
             EHGIKNVNTKGGFQKS
Sbjct  1183  EHGIKNVNTKGGFQKS  1198

3) HPAG1_0524 in NC_008086


> AY330637|20|G20|37811806|AAR03881.1|Helicobacter_pylori_Ca52|+|21859..25455|cagA|HP0547|CagA
Length=1198

 Score = 1689 bits (6413),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1092/1201 (91%), Positives = 1149/1201 (96%), Gaps = 20/1201 (1%)

Query  1     MTNETINQQPQTEAAFNPQQFINNLQVAFLKVDNAVVSYDPDQKPIVDKNDRDNRQAFDG  60
             MTNETINQQPQTEAAFNPQQFINNLQVAFLKVDNAV SYDPDQKPIVDKNDRDNRQAF+G
Sbjct  17    MTNETINQQPQTEAAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNRQAFEG  76

Query  61    ISQLREEYSNKAIKNPTKKNQYFSDFINKSNDLINKDNLIDVESSTKSFQKFGDQRYRIF  120
             ISQLREEYSNKAIKNPTKKNQYFSDFI+KSNDLINKDNL+DVESSTKSFQKFGDQRY+IF
Sbjct  77    ISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNLVDVESSTKSFQKFGDQRYQIF  136

Query  121   TSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQSFAGIIIGNQIRTDQ  180
             TSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQ+FAGIIIGNQIRTDQ
Sbjct  137   TSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQAFAGIIIGNQIRTDQ  196

Query  181   KFMGVFDEFLKERQEAEKNGGPTGGDWLDIFLSFIFDKKQSSDVKEAINQEPVPHVQPDI  240
             KFMGVFDE LKERQEAEKNGGPTGGDWLDIFLSF+F+KKQSSD+KE+++QEPVPHVQPDI
Sbjct  197   KFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSFVFNKKQSSDLKETLDQEPVPHVQPDI  256

Query  241   ATTTTDIQGLPPESRDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALS  300
             ATTTTDIQGLPPE+RDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALS
Sbjct  257   ATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALS  316

Query  301   SVLMGSHDGIEPEKVSLLYGNNGGPEARHDWNATVGYKNQQGDNVATLINVHMKNGSGLV  360
             SVLMGSH+GIEPEKVSLLYG NGG  A+HDWNATVGYK+QQG+NVAT+INVHMKNGSGLV
Sbjct  317   SVLMGSHNGIEPEKVSLLYGGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKNGSGLV  376

Query  361   IAGGEKGVNNPSFYLYKEDQLTGLKQALSQEEIRNKVDFMEFLAQNNAKLDNLSEKEKEK  420
             IAGGEKG+NNPSFYLYKEDQLTG ++ALSQEEI+NK++FMEFLAQNNAKLDNLSEKEKEK
Sbjct  377   IAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKINFMEFLAQNNAKLDNLSEKEKEK  436

Query  421   FQTEIKDFQKDSKAYLDALGNDRIAFVSKKDTKHSALLTEFGNGDLSYTLKDYGKKADKA  480
             F+TEI DFQKDSKAYLDALGNDRIAFVSKKDTKHSAL+TEFGNGDLSYTLKDYGKKADKA
Sbjct  437   FRTEIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGKKADKA  496

Query  481   LDREKNVTLQGNLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEANLSKVAVFNL  540
             LDREKNVTLQG+LKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEA + KVAVFNL
Sbjct  497   LDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFDKVAVFNL  556

Query  541   PNLNNLAITSYVRRDLEDKLWAKGLSPQEANKLIKDFLNSNKELVGKTLNFNKAVAEAKN  600
             P+LNNLAITS+VRR+LEDKL +KGLS QEANKLIKDFLNSNKELVGK+LNFNKAVAEAKN
Sbjct  557   PDLNNLAITSFVRRNLEDKLATKGLSLQEANKLIKDFLNSNKELVGKALNFNKAVAEAKN  616

Query  601   TGDYDEVKKAHKDLEKSLRKREHLEKEVAKKLESKSGNKNKMEAKSQANSQKDEIFALIN  660
             TG+YDEVKKA+KDLEKSL+KREHLEKEVAKKLESKSGNKNKMEAKSQANSQKDEIFALIN
Sbjct  617   TGNYDEVKKAQKDLEKSLKKREHLEKEVAKKLESKSGNKNKMEAKSQANSQKDEIFALIN  676

Query  661   KEANRDARAIAYAQNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKTEETLK  720
             KEANRDARAIAYAQNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSK+EETLK
Sbjct  677   KEANRDARAIAYAQNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKAEETLK  736

Query  721   ALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSIKDVIINQKI  780
             ALKGSVKDLGINPEWISKVENLN+ALNEFKNGKNKDFSKVTQAKSDLENSIKDVIINQKI
Sbjct  737   ALKGSVKDLGINPEWISKVENLNTALNEFKNGKNKDFSKVTQAKSDLENSIKDVIINQKI  796

Query  781   TDKADNLNQAVSVAKTTGDFSRVEQALADLKNFSKGQLAQQAQKNEDFNTGKNSELYQSV  840
             TDK DNLNQAVS+AK+TGDFS VEQALADLKNFSKGQLAQQAQKNEDFNTGKNSE+YQSV
Sbjct  797   TDKVDNLNQAVSIAKATGDFSGVEQALADLKNFSKGQLAQQAQKNEDFNTGKNSEIYQSV  856

Query  841   KNGVNKTLVGNGLSGIEATALAKNFSDIkkelnekfknfnnnnnnglknEPIYAKVNKKK  900
             KNGVN TLVGNGLS  EAT+L+KNFSDIKKEL+ K+ NFNNNNNNGLKNEPIYAKVNKKK
Sbjct  857   KNGVNGTLVGNGLSKAEATTLSKNFSDIKKELEAKLGNFNNNNNNGLKNEPIYAKVNKKK  916

Query  901   TGQVASPEEPIYAKVNKKKTGQVASPEEPIYTQVAKKVNAKIDRLNQIASGLGGVGQAAG  960
             +GQ ASPEEPIYA                   QVAKKVNAKIDRLNQIASGLGGVGQAAG
Sbjct  917   AGQAASPEEPIYA-------------------QVAKKVNAKIDRLNQIASGLGGVGQAAG  957

Query  961   FPLKRHDKVDDLSKVGRSVSPEPIYATIDDLGGPFPLKRHDKVDDLSKVGLSRNQELAQK  1020
             FPLKRHDKVDDLSKVG S + EPIYATIDDLGG+FPLKRHDKVDDLSKVGLSRNQELAQK
Sbjct  958   FPLKRHDKVDDLSKVGLSANHEPIYATIDDLGGSFPLKRHDKVDDLSKVGLSRNQELAQK  1017

Query  1021  IDNLNQAVSEAKAGFFGNLEQAIDKLKDSTKHNPMNLWVESAKKVPASLSAKLDNYATNS  1080
             IDNLNQAVSEAKAGFFGNLEQ+ID+LKDSTK N++NLW ESAKKVPASLSAKLDNYA NS
Sbjct  1018  IDNLNQAVSEAKAGFFGNLEQTIDNLKDSTKYNSVNLWAESAKKVPASLSAKLDNYAINS  1077

Query  1081  HTRINSNIQNGAINEKVTGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDRIGFNQKNMK  1140
             HTRINSN++NGAINEK TGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYD+IGFNQKNMK
Sbjct  1078  HTRINSNVKNGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMK  1137

Query  1141  DYSDSFKFSTKLNNAVKDIKSGFVQFLTNTFSTASYYC-LAEENAKHGIKNANTKGGFQK  1199
             DYSDSFKFSTKLNNAVKD KSGF +FL+N+FSTASYY  LA ENA HGIKN NTKGGFQK
Sbjct  1138  DYSDSFKFSTKLNNAVKDTKSGFTRFLANAFSTASYYYFLAGENAEHGIKNVNTKGGFQK  1197

Query  1200  S  1200
             S
Sbjct  1198  S  1198

4) HPELS_03850 in NC_017063


> AY330637|20|G20|37811806|AAR03881.1|Helicobacter_pylori_Ca52|+|21859..25455|cagA|HP0547|CagA
Length=1198

 Score = 1678 bits (6373),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1086/1183 (92%), Positives = 1141/1183 (97%), Gaps = 3/1183 (0%)

Query  1     MTNETINQQPQTEAAFNPQQFINNLQVAFLKLDNAVASFDPDQKPIVDKNDRDNRQAFDG  60
             MTNETINQQPQTEAAFNPQQFINNLQVAFLK+DNAVAS+DPDQKPIVDKNDRDNRQAF+G
Sbjct  17    MTNETINQQPQTEAAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNRQAFEG  76

Query  61    ISQLREEYSNKAIKNPTKKNQYFSDFINKSNDLINKDNLIDVESSTKSFQKFGDQRYRIF  120
             ISQLREEYSNKAIKNPTKKNQYFSDFI+KSNDLINKDNL+DVESSTKSFQKFGDQRY+IF
Sbjct  77    ISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNLVDVESSTKSFQKFGDQRYQIF  136

Query  121   TSWVSHQNDPSKINTRSIRNFMEHTIQPPISDDKEKAEFLKSAKQSFAGIIIGNQIRTDQ  180
             TSWVSHQNDPSKINTRSIRNFME+ IQPPI+DDKEKAEFLKSAKQ+FAGIIIGNQIRTDQ
Sbjct  137   TSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQAFAGIIIGNQIRTDQ  196

Query  181   KFMGVFDESLKERQEAEKNGEPTGGDWLDIFLSFIFDKKRSSDVKEAINQEPVPHVQPDI  240
             KFMGVFDESLKERQEAEKNG PTGGDWLDIFLSF+F+KK+SSD+KE+++QEPVPHVQPDI
Sbjct  197   KFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSFVFNKKQSSDLKETLDQEPVPHVQPDI  256

Query  241   ATTTTHIQGLPPESRDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALS  300
             ATTTT+IQGLPPE+RDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALS
Sbjct  257   ATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALS  316

Query  301   SVLMGSHNGIEPEKVSLLYAGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKNGSGLV  360
             SVLMGSHNGIEPEKVSLLY+GNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKNGSGLV
Sbjct  317   SVLMGSHNGIEPEKVSLLYGGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKNGSGLV  376

Query  361   IAGGEKGINNPSFYLYKEDQLTGSQRALSQEEILNKVDFMEFLAQNNAKLDNLSEKEKEK  420
             IAGGEKGINNPSFYLYKEDQLTGSQRALSQEEI NK++FMEFLAQNNAKLDNLSEKEKEK
Sbjct  377   IAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKINFMEFLAQNNAKLDNLSEKEKEK  436

Query  421   FRNEIKDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGKGDLSYTLKDYGKKADKA  480
             FR EI DFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFG+GDLSYTLKDYGKKADKA
Sbjct  437   FRTEIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGKKADKA  496

Query  481   LDREKNVTLQGNLKHDGVMFVDYSNFKYTNASKNPNKGVGATNGVSHLDAGFNKVAVFNL  540
             LDREKNVTLQG+LKHDGVMFVDYSNFKYTNASKNPNKGVG TNGVSHL+AGF+KVAVFNL
Sbjct  497   LDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFDKVAVFNL  556

Query  541   PDLNNLAITSFVRRNLEDKLTTKGLSLQEANKLIKDFLSSNKELVGKALNFNKAVAEAKS  600
             PDLNNLAITSFVRRNLEDKL+TKGLSLQEANKLIKDFL+SNKELVGKALNFNKAVAEAK+
Sbjct  557   PDLNNLAITSFVRRNLEDKLATKGLSLQEANKLIKDFLNSNKELVGKALNFNKAVAEAKN  616

Query  601   TGNYDEVKKAQKDLEKSlrkrehlekevekklesksGNKNKMEAKSQANSQKDEIFALIN  660
             TGNYDEVKKAQKDLEKSL+KREHLEKEV KKLESKSGNKNKMEAKSQANSQKDEIFALIN
Sbjct  617   TGNYDEVKKAQKDLEKSLKKREHLEKEVAKKLESKSGNKNKMEAKSQANSQKDEIFALIN  676

Query  661   KEANRDARAIAYSQNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKAEETLK  720
             KEANRDARAIAY+QNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKAEETLK
Sbjct  677   KEANRDARAIAYAQNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKAEETLK  736

Query  721   ALKGSVKDLGINPEWISKVENLNAALNDFKNGKNKDFSKVTQAKSDLENSVKDVIINQKI  780
             ALKGSVKDLGINPEWISKVENLN+ALN+FKNGKNKDFSKVTQAKSDLENS+KDVIINQKI
Sbjct  737   ALKGSVKDLGINPEWISKVENLNTALNEFKNGKNKDFSKVTQAKSDLENSIKDVIINQKI  796

Query  781   TDKVDDLNQAVSVAKATGDFSRVEQALADLKNFSKEQLAQQAQKNESFNVGKKSEIYQSV  840
             TDKVD+LNQAVS+AKATGDFS VEQALADLKNFSK QLAQQAQKNE FN GK+SEIYQSV
Sbjct  797   TDKVDNLNQAVSIAKATGDFSGVEQALADLKNFSKGQLAQQAQKNEDFNTGKNSEIYQSV  856

Query  841   KSGVNGTLVGNGLSGIEATALAKNFSDIkkelnekfknfnnnnnglknSTEPIYAKVNKK  900
             K+GVNGTLVGNGLS  EAT+L+KNFSDI K   E      NNNN      EPIYAKVNKK
Sbjct  857   KNGVNGTLVGNGLSKAEATTLSKNFSDI-KKELEAKLGNFNNNNNNGLKNEPIYAKVNKK  915

Query  901   KTGQVASPEEPIYTQVAKKVNAKIDRLNQIASGLGGVGQAAGFPLKKHDKVDDLSKVGRS  960
             K+GQ ASPEEPIY+QVAKKVNAKIDRLNQIASGLGGVGQAAGFPLK+HDKVDDLSKVG S
Sbjct  916   KAGQAASPEEPIYAQVAKKVNAKIDRLNQIASGLGGVGQAAGFPLKRHDKVDDLSKVGLS  975

Query  961   VSPEPIYATIDDLGGPFPLKKHAKVDDLSKVGLSRNQELAQKIDNLNQAVLEAKAGFFGN  1020
              + EPIYATIDDLGG+FPLK+H KVDDLSKVGLSRNQELAQKIDNLNQAV EAKAGFFGN
Sbjct  976   ANHEPIYATIDDLGGSFPLKRHDKVDDLSKVGLSRNQELAQKIDNLNQAVSEAKAGFFGN  1035

Query  1021  LERTVDKLKDSTKHNPMNLWAESAKKVPASLSAKLDNYATNSHTRINSNIQNGAINEKAT  1080
             LE+T+D+LKDSTK N++NLWAESAKKVPASLSAKLDNYA NSHTRINSN++NGAINEKAT
Sbjct  1036  LEQTIDNLKDSTKYNSVNLWAESAKKVPASLSAKLDNYAINSHTRINSNVKNGAINEKAT  1095

Query  1081  GMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFSTKLNNAVKD  1140
             GMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFSTKLNNAVKD
Sbjct  1096  GMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFSTKLNNAVKD  1155

Query  1141  VKSGFTQFLSNAFSTG--YYCLARENAEHGIKNVNTKGGFQKS  1181
              KSGFT+FL+NAFST+  YY LA ENAEHGIKNVNTKGGFQKS
Sbjct  1156  TKSGFTRFLANAFSTASYYYFLAGENAEHGIKNVNTKGGFQKS  1198

5) C694_02825 in NC_018939


> AY330637|20|G20|37811806|AAR03881.1|Helicobacter_pylori_Ca52|+|21859..25455|cagA|HP0547|CagA
Length=1198

 Score = 1669 bits (6338),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1087/1188 (92%), Positives = 1140/1188 (96%), Gaps = 8/1188 (0%)

Query  1     MTNETIDQTRTPDQTQSQTAFDPQQFINNLQVAFIKVDNVVASFDPDQKPIVDKNDRDNR  60
             MTNETI+Q     Q Q+++AF+PQQFINNLQVAF+KVDN VAS+DPDQKPIVDKNDRDNR
Sbjct  17    MTNETINQ-----QPQTEAAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNR  71

Query  61    QAFDGISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNLIDVESSTKSFQKFGDQ  120
             QAF+GISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNL+DVESSTKSFQKFGDQ
Sbjct  72    QAFEGISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNLVDVESSTKSFQKFGDQ  131

Query  121   RYQIFTSWVSHQKDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQSFAGIIIGNQ  180
             RYQIFTSWVSHQ+DPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQ+FAGIIIGNQ
Sbjct  132   RYQIFTSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQAFAGIIIGNQ  191

Query  181   IRTDQKFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSFIFNKKQSSDVKEAINQEPVPH  240
             IRTDQKFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSF+FNKKQSSD+KE+++QEPVPH
Sbjct  192   IRTDQKFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSFVFNKKQSSDLKETLDQEPVPH  251

Query  241   VQPDIATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIH  300
             VQPDIATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIH
Sbjct  252   VQPDIATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIH  311

Query  301   NNALSSVLMGSHNGIEPEKVSLLYAGNGGFGDKHDWNATVGYKDQQGNNVATLINVHMKN  360
             NNALSSVLMGSHNGIEPEKVSLLY+GNGGFG KHDWNATVGYKDQQGNNVAT+INVHMKN
Sbjct  312   NNALSSVLMGSHNGIEPEKVSLLYGGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKN  371

Query  361   GSGLVIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIRNKVDFMEFLAQNNTKLDNLSE  420
             GSGLVIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEI+NK++FMEFLAQNN+KLDNLSE
Sbjct  372   GSGLVIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKINFMEFLAQNNAKLDNLSE  431

Query  421   KEKEKFQNEIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFNNGDLSYTLKDYGK  480
             KEKEKF+ EIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEF NGDLSYTLKDYGK
Sbjct  432   KEKEKFRTEIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGK  491

Query  481   KADKALDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGATNGVSHLEAGFNKV  540
             KADKALDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVG TNGVSHLEAGF+KV
Sbjct  492   KADKALDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFDKV  551

Query  541   AVFNLPDLNNLAITSFVRRNLENKLTAKGLSLQEANKLIKDFLSSNKELAGKALNFNKAV  600
             AVFNLPDLNNLAITSFVRRNLE+KL++KGLSLQEANKLIKDFL+SNKEL GKALNFNKAV
Sbjct  552   AVFNLPDLNNLAITSFVRRNLEDKLATKGLSLQEANKLIKDFLNSNKELVGKALNFNKAV  611

Query  601   AEAKSTGNYDEVKKAQKDLEKSlrkrehlekevekklesksGNKNKMEAKAQANSQKDEI  660
             AEAK+TGNYDEVKKAQKDLEKSL+KREHLEKEV KKLESKSGNKNKMEAK+QANSQKDEI
Sbjct  612   AEAKNTGNYDEVKKAQKDLEKSLKKREHLEKEVAKKLESKSGNKNKMEAKSQANSQKDEI  671

Query  661   FALINKEANRDARAIAYTQNLKGIKRELSDKLEKISKDLKDFSKSFDEFKNGKNKDFSKA  720
             FALINKEANRDARAIAY+QNLKGIKRELSDKLE+I+KDLKDFSKSFDEFKNGKNKDFSKA
Sbjct  672   FALINKEANRDARAIAYAQNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKA  731

Query  721   EETLKALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSVKDVI  780
             EETLKALKGSVKDLGINPEWISKVENLN+ALNEFKNGKNKDFSKVTQAKSDLENS+KDVI
Sbjct  732   EETLKALKGSVKDLGINPEWISKVENLNTALNEFKNGKNKDFSKVTQAKSDLENSIKDVI  791

Query  781   INQKVTDKVDNLNQAVSVAKAMGDFSRVEQVLADLKNFSKEQLAQQAQKNEDFNTGKNSE  840
             INQK+TDKVDNLNQAVS+AKA GDFS VEQ LADLKNFSK QLAQQAQKNEDFNTGKNSE
Sbjct  792   INQKITDKVDNLNQAVSIAKATGDFSGVEQALADLKNFSKGQLAQQAQKNEDFNTGKNSE  851

Query  841   LYQSVKNSVNKTLVGNGLSGIEATALAKNFSDIkkelnekfknfnnnnnglknSTEPIYA  900
             +YQSVKN+VN TLVGNGLS  EAT+L+KNFSDI K   E      NNNN      EPIYA
Sbjct  852   IYQSVKNGVNGTLVGNGLSKAEATTLSKNFSDI-KKELEAKLGNFNNNNNNGLKNEPIYA  910

Query  901   KVNKKKTGQVASPEEPIYTQVAKKVNAKIDRLNQIASGLGGVGQAAGFPLKRHDKVDDLS  960
             KVNKKK+GQ ASPEEPIY+QVAKKVNAKIDRLNQIASGLGGVGQAAGFPLKRHDKVDDLS
Sbjct  911   KVNKKKAGQAASPEEPIYAQVAKKVNAKIDRLNQIASGLGGVGQAAGFPLKRHDKVDDLS  970

Query  961   KVGLSASPEPIYATIDDLGGPFPLKRHDKVDDLSKVGRSRNQELAQKIDNLNQAVSEAKA  1020
             KVGLSA+ EPIYATIDDLGG+FPLKRHDKVDDLSKVG SRNQELAQKIDNLNQAVSEAKA
Sbjct  971   KVGLSANHEPIYATIDDLGGSFPLKRHDKVDDLSKVGLSRNQELAQKIDNLNQAVSEAKA  1030

Query  1021  GFFGNLEQTIDKLKDSTKKNVMNLYVESAKKVPASLSAKLDNYAINSHTRINSNIQNGAI  1080
             GFFGNLEQTID+LKDSTK N +NL  ESAKKVPASLSAKLDNYAINSHTRINSN++NGAI
Sbjct  1031  GFFGNLEQTIDNLKDSTKYNSVNLWAESAKKVPASLSAKLDNYAINSHTRINSNVKNGAI  1090

Query  1081  NEKATGMLTQKNPEWLKLVNDKIVAHNVGSVSLSEYDKIGFNQKNMKDYSDSFKFSTKLN  1140
             NEKATGMLTQKNPEWLKLVNDKIVAHNVGSV+LSEYDKIGFNQKNMKDYSDSFKFSTKLN
Sbjct  1091  NEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFSTKLN  1150

Query  1141  NAVKDIKSGFTHFLANAFSTG--YYCLARENAEHGIKNVNTKGGFQKS  1186
             NAVKD KSGFT+FLANAFST+  YY LA ENAEHGIKNVNTKGGFQKS
Sbjct  1151  NAVKDTKSGFTRFLANAFSTASYYYFLAGENAEHGIKNVNTKGGFQKS  1198

6) HP0547 in NC_000915


> AY330637|20|G20|37811806|AAR03881.1|Helicobacter_pylori_Ca52|+|21859..25455|cagA|HP0547|CagA
Length=1198

 Score = 1669 bits (6338),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1087/1188 (92%), Positives = 1140/1188 (96%), Gaps = 8/1188 (0%)

Query  1     MTNETIDQTRTPDQTQSQTAFDPQQFINNLQVAFIKVDNVVASFDPDQKPIVDKNDRDNR  60
             MTNETI+Q     Q Q+++AF+PQQFINNLQVAF+KVDN VAS+DPDQKPIVDKNDRDNR
Sbjct  17    MTNETINQ-----QPQTEAAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNR  71

Query  61    QAFDGISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNLIDVESSTKSFQKFGDQ  120
             QAF+GISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNL+DVESSTKSFQKFGDQ
Sbjct  72    QAFEGISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNLVDVESSTKSFQKFGDQ  131

Query  121   RYQIFTSWVSHQKDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQSFAGIIIGNQ  180
             RYQIFTSWVSHQ+DPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQ+FAGIIIGNQ
Sbjct  132   RYQIFTSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQAFAGIIIGNQ  191

Query  181   IRTDQKFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSFIFNKKQSSDVKEAINQEPVPH  240
             IRTDQKFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSF+FNKKQSSD+KE+++QEPVPH
Sbjct  192   IRTDQKFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSFVFNKKQSSDLKETLDQEPVPH  251

Query  241   VQPDIATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIH  300
             VQPDIATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIH
Sbjct  252   VQPDIATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIH  311

Query  301   NNALSSVLMGSHNGIEPEKVSLLYAGNGGFGDKHDWNATVGYKDQQGNNVATLINVHMKN  360
             NNALSSVLMGSHNGIEPEKVSLLY+GNGGFG KHDWNATVGYKDQQGNNVAT+INVHMKN
Sbjct  312   NNALSSVLMGSHNGIEPEKVSLLYGGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKN  371

Query  361   GSGLVIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIRNKVDFMEFLAQNNTKLDNLSE  420
             GSGLVIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEI+NK++FMEFLAQNN+KLDNLSE
Sbjct  372   GSGLVIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKINFMEFLAQNNAKLDNLSE  431

Query  421   KEKEKFQNEIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFNNGDLSYTLKDYGK  480
             KEKEKF+ EIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEF NGDLSYTLKDYGK
Sbjct  432   KEKEKFRTEIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGK  491

Query  481   KADKALDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGATNGVSHLEAGFNKV  540
             KADKALDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVG TNGVSHLEAGF+KV
Sbjct  492   KADKALDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFDKV  551

Query  541   AVFNLPDLNNLAITSFVRRNLENKLTAKGLSLQEANKLIKDFLSSNKELAGKALNFNKAV  600
             AVFNLPDLNNLAITSFVRRNLE+KL++KGLSLQEANKLIKDFL+SNKEL GKALNFNKAV
Sbjct  552   AVFNLPDLNNLAITSFVRRNLEDKLATKGLSLQEANKLIKDFLNSNKELVGKALNFNKAV  611

Query  601   AEAKSTGNYDEVKKAQKDLEKSlrkrehlekevekklesksGNKNKMEAKAQANSQKDEI  660
             AEAK+TGNYDEVKKAQKDLEKSL+KREHLEKEV KKLESKSGNKNKMEAK+QANSQKDEI
Sbjct  612   AEAKNTGNYDEVKKAQKDLEKSLKKREHLEKEVAKKLESKSGNKNKMEAKSQANSQKDEI  671

Query  661   FALINKEANRDARAIAYTQNLKGIKRELSDKLEKISKDLKDFSKSFDEFKNGKNKDFSKA  720
             FALINKEANRDARAIAY+QNLKGIKRELSDKLE+I+KDLKDFSKSFDEFKNGKNKDFSKA
Sbjct  672   FALINKEANRDARAIAYAQNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKA  731

Query  721   EETLKALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSVKDVI  780
             EETLKALKGSVKDLGINPEWISKVENLN+ALNEFKNGKNKDFSKVTQAKSDLENS+KDVI
Sbjct  732   EETLKALKGSVKDLGINPEWISKVENLNTALNEFKNGKNKDFSKVTQAKSDLENSIKDVI  791

Query  781   INQKVTDKVDNLNQAVSVAKAMGDFSRVEQVLADLKNFSKEQLAQQAQKNEDFNTGKNSE  840
             INQK+TDKVDNLNQAVS+AKA GDFS VEQ LADLKNFSK QLAQQAQKNEDFNTGKNSE
Sbjct  792   INQKITDKVDNLNQAVSIAKATGDFSGVEQALADLKNFSKGQLAQQAQKNEDFNTGKNSE  851

Query  841   LYQSVKNSVNKTLVGNGLSGIEATALAKNFSDIkkelnekfknfnnnnnglknSTEPIYA  900
             +YQSVKN+VN TLVGNGLS  EAT+L+KNFSDI K   E      NNNN      EPIYA
Sbjct  852   IYQSVKNGVNGTLVGNGLSKAEATTLSKNFSDI-KKELEAKLGNFNNNNNNGLKNEPIYA  910

Query  901   KVNKKKTGQVASPEEPIYTQVAKKVNAKIDRLNQIASGLGGVGQAAGFPLKRHDKVDDLS  960
             KVNKKK+GQ ASPEEPIY+QVAKKVNAKIDRLNQIASGLGGVGQAAGFPLKRHDKVDDLS
Sbjct  911   KVNKKKAGQAASPEEPIYAQVAKKVNAKIDRLNQIASGLGGVGQAAGFPLKRHDKVDDLS  970

Query  961   KVGLSASPEPIYATIDDLGGPFPLKRHDKVDDLSKVGRSRNQELAQKIDNLNQAVSEAKA  1020
             KVGLSA+ EPIYATIDDLGG+FPLKRHDKVDDLSKVG SRNQELAQKIDNLNQAVSEAKA
Sbjct  971   KVGLSANHEPIYATIDDLGGSFPLKRHDKVDDLSKVGLSRNQELAQKIDNLNQAVSEAKA  1030

Query  1021  GFFGNLEQTIDKLKDSTKKNVMNLYVESAKKVPASLSAKLDNYAINSHTRINSNIQNGAI  1080
             GFFGNLEQTID+LKDSTK N +NL  ESAKKVPASLSAKLDNYAINSHTRINSN++NGAI
Sbjct  1031  GFFGNLEQTIDNLKDSTKYNSVNLWAESAKKVPASLSAKLDNYAINSHTRINSNVKNGAI  1090

Query  1081  NEKATGMLTQKNPEWLKLVNDKIVAHNVGSVSLSEYDKIGFNQKNMKDYSDSFKFSTKLN  1140
             NEKATGMLTQKNPEWLKLVNDKIVAHNVGSV+LSEYDKIGFNQKNMKDYSDSFKFSTKLN
Sbjct  1091  NEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFSTKLN  1150

Query  1141  NAVKDIKSGFTHFLANAFSTG--YYCLARENAEHGIKNVNTKGGFQKS  1186
             NAVKD KSGFT+FLANAFST+  YY LA ENAEHGIKNVNTKGGFQKS
Sbjct  1151  NAVKDTKSGFTRFLANAFSTASYYYFLAGENAEHGIKNVNTKGGFQKS  1198

7) C695_02825 in NC_018937


> AY330637|20|G20|37811806|AAR03881.1|Helicobacter_pylori_Ca52|+|21859..25455|cagA|HP0547|CagA
Length=1198

 Score = 1669 bits (6338),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1087/1188 (92%), Positives = 1140/1188 (96%), Gaps = 8/1188 (0%)

Query  1     MTNETIDQTRTPDQTQSQTAFDPQQFINNLQVAFIKVDNVVASFDPDQKPIVDKNDRDNR  60
             MTNETI+Q     Q Q+++AF+PQQFINNLQVAF+KVDN VAS+DPDQKPIVDKNDRDNR
Sbjct  17    MTNETINQ-----QPQTEAAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNR  71

Query  61    QAFDGISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNLIDVESSTKSFQKFGDQ  120
             QAF+GISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNL+DVESSTKSFQKFGDQ
Sbjct  72    QAFEGISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNLVDVESSTKSFQKFGDQ  131

Query  121   RYQIFTSWVSHQKDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQSFAGIIIGNQ  180
             RYQIFTSWVSHQ+DPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQ+FAGIIIGNQ
Sbjct  132   RYQIFTSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQAFAGIIIGNQ  191

Query  181   IRTDQKFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSFIFNKKQSSDVKEAINQEPVPH  240
             IRTDQKFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSF+FNKKQSSD+KE+++QEPVPH
Sbjct  192   IRTDQKFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSFVFNKKQSSDLKETLDQEPVPH  251

Query  241   VQPDIATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIH  300
             VQPDIATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIH
Sbjct  252   VQPDIATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIH  311

Query  301   NNALSSVLMGSHNGIEPEKVSLLYAGNGGFGDKHDWNATVGYKDQQGNNVATLINVHMKN  360
             NNALSSVLMGSHNGIEPEKVSLLY+GNGGFG KHDWNATVGYKDQQGNNVAT+INVHMKN
Sbjct  312   NNALSSVLMGSHNGIEPEKVSLLYGGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKN  371

Query  361   GSGLVIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIRNKVDFMEFLAQNNTKLDNLSE  420
             GSGLVIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEI+NK++FMEFLAQNN+KLDNLSE
Sbjct  372   GSGLVIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKINFMEFLAQNNAKLDNLSE  431

Query  421   KEKEKFQNEIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFNNGDLSYTLKDYGK  480
             KEKEKF+ EIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEF NGDLSYTLKDYGK
Sbjct  432   KEKEKFRTEIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGK  491

Query  481   KADKALDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGATNGVSHLEAGFNKV  540
             KADKALDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVG TNGVSHLEAGF+KV
Sbjct  492   KADKALDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFDKV  551

Query  541   AVFNLPDLNNLAITSFVRRNLENKLTAKGLSLQEANKLIKDFLSSNKELAGKALNFNKAV  600
             AVFNLPDLNNLAITSFVRRNLE+KL++KGLSLQEANKLIKDFL+SNKEL GKALNFNKAV
Sbjct  552   AVFNLPDLNNLAITSFVRRNLEDKLATKGLSLQEANKLIKDFLNSNKELVGKALNFNKAV  611

Query  601   AEAKSTGNYDEVKKAQKDLEKSlrkrehlekevekklesksGNKNKMEAKAQANSQKDEI  660
             AEAK+TGNYDEVKKAQKDLEKSL+KREHLEKEV KKLESKSGNKNKMEAK+QANSQKDEI
Sbjct  612   AEAKNTGNYDEVKKAQKDLEKSLKKREHLEKEVAKKLESKSGNKNKMEAKSQANSQKDEI  671

Query  661   FALINKEANRDARAIAYTQNLKGIKRELSDKLEKISKDLKDFSKSFDEFKNGKNKDFSKA  720
             FALINKEANRDARAIAY+QNLKGIKRELSDKLE+I+KDLKDFSKSFDEFKNGKNKDFSKA
Sbjct  672   FALINKEANRDARAIAYAQNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKA  731

Query  721   EETLKALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSVKDVI  780
             EETLKALKGSVKDLGINPEWISKVENLN+ALNEFKNGKNKDFSKVTQAKSDLENS+KDVI
Sbjct  732   EETLKALKGSVKDLGINPEWISKVENLNTALNEFKNGKNKDFSKVTQAKSDLENSIKDVI  791

Query  781   INQKVTDKVDNLNQAVSVAKAMGDFSRVEQVLADLKNFSKEQLAQQAQKNEDFNTGKNSE  840
             INQK+TDKVDNLNQAVS+AKA GDFS VEQ LADLKNFSK QLAQQAQKNEDFNTGKNSE
Sbjct  792   INQKITDKVDNLNQAVSIAKATGDFSGVEQALADLKNFSKGQLAQQAQKNEDFNTGKNSE  851

Query  841   LYQSVKNSVNKTLVGNGLSGIEATALAKNFSDIkkelnekfknfnnnnnglknSTEPIYA  900
             +YQSVKN+VN TLVGNGLS  EAT+L+KNFSDI K   E      NNNN      EPIYA
Sbjct  852   IYQSVKNGVNGTLVGNGLSKAEATTLSKNFSDI-KKELEAKLGNFNNNNNNGLKNEPIYA  910

Query  901   KVNKKKTGQVASPEEPIYTQVAKKVNAKIDRLNQIASGLGGVGQAAGFPLKRHDKVDDLS  960
             KVNKKK+GQ ASPEEPIY+QVAKKVNAKIDRLNQIASGLGGVGQAAGFPLKRHDKVDDLS
Sbjct  911   KVNKKKAGQAASPEEPIYAQVAKKVNAKIDRLNQIASGLGGVGQAAGFPLKRHDKVDDLS  970

Query  961   KVGLSASPEPIYATIDDLGGPFPLKRHDKVDDLSKVGRSRNQELAQKIDNLNQAVSEAKA  1020
             KVGLSA+ EPIYATIDDLGG+FPLKRHDKVDDLSKVG SRNQELAQKIDNLNQAVSEAKA
Sbjct  971   KVGLSANHEPIYATIDDLGGSFPLKRHDKVDDLSKVGLSRNQELAQKIDNLNQAVSEAKA  1030

Query  1021  GFFGNLEQTIDKLKDSTKKNVMNLYVESAKKVPASLSAKLDNYAINSHTRINSNIQNGAI  1080
             GFFGNLEQTID+LKDSTK N +NL  ESAKKVPASLSAKLDNYAINSHTRINSN++NGAI
Sbjct  1031  GFFGNLEQTIDNLKDSTKYNSVNLWAESAKKVPASLSAKLDNYAINSHTRINSNVKNGAI  1090

Query  1081  NEKATGMLTQKNPEWLKLVNDKIVAHNVGSVSLSEYDKIGFNQKNMKDYSDSFKFSTKLN  1140
             NEKATGMLTQKNPEWLKLVNDKIVAHNVGSV+LSEYDKIGFNQKNMKDYSDSFKFSTKLN
Sbjct  1091  NEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFSTKLN  1150

Query  1141  NAVKDIKSGFTHFLANAFSTG--YYCLARENAEHGIKNVNTKGGFQKS  1186
             NAVKD KSGFT+FLANAFST+  YY LA ENAEHGIKNVNTKGGFQKS
Sbjct  1151  NAVKDTKSGFTRFLANAFSTASYYYFLAGENAEHGIKNVNTKGGFQKS  1198

8) C730_02825 in NC_018938


> AY330637|20|G20|37811806|AAR03881.1|Helicobacter_pylori_Ca52|+|21859..25455|cagA|HP0547|CagA
Length=1198

 Score = 1669 bits (6338),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1087/1188 (92%), Positives = 1140/1188 (96%), Gaps = 8/1188 (0%)

Query  1     MTNETIDQTRTPDQTQSQTAFDPQQFINNLQVAFIKVDNVVASFDPDQKPIVDKNDRDNR  60
             MTNETI+Q     Q Q+++AF+PQQFINNLQVAF+KVDN VAS+DPDQKPIVDKNDRDNR
Sbjct  17    MTNETINQ-----QPQTEAAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNR  71

Query  61    QAFDGISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNLIDVESSTKSFQKFGDQ  120
             QAF+GISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNL+DVESSTKSFQKFGDQ
Sbjct  72    QAFEGISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNLVDVESSTKSFQKFGDQ  131

Query  121   RYQIFTSWVSHQKDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQSFAGIIIGNQ  180
             RYQIFTSWVSHQ+DPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQ+FAGIIIGNQ
Sbjct  132   RYQIFTSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQAFAGIIIGNQ  191

Query  181   IRTDQKFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSFIFNKKQSSDVKEAINQEPVPH  240
             IRTDQKFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSF+FNKKQSSD+KE+++QEPVPH
Sbjct  192   IRTDQKFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSFVFNKKQSSDLKETLDQEPVPH  251

Query  241   VQPDIATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIH  300
             VQPDIATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIH
Sbjct  252   VQPDIATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIH  311

Query  301   NNALSSVLMGSHNGIEPEKVSLLYAGNGGFGDKHDWNATVGYKDQQGNNVATLINVHMKN  360
             NNALSSVLMGSHNGIEPEKVSLLY+GNGGFG KHDWNATVGYKDQQGNNVAT+INVHMKN
Sbjct  312   NNALSSVLMGSHNGIEPEKVSLLYGGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKN  371

Query  361   GSGLVIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIRNKVDFMEFLAQNNTKLDNLSE  420
             GSGLVIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEI+NK++FMEFLAQNN+KLDNLSE
Sbjct  372   GSGLVIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKINFMEFLAQNNAKLDNLSE  431

Query  421   KEKEKFQNEIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFNNGDLSYTLKDYGK  480
             KEKEKF+ EIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEF NGDLSYTLKDYGK
Sbjct  432   KEKEKFRTEIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGK  491

Query  481   KADKALDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGATNGVSHLEAGFNKV  540
             KADKALDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVG TNGVSHLEAGF+KV
Sbjct  492   KADKALDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFDKV  551

Query  541   AVFNLPDLNNLAITSFVRRNLENKLTAKGLSLQEANKLIKDFLSSNKELAGKALNFNKAV  600
             AVFNLPDLNNLAITSFVRRNLE+KL++KGLSLQEANKLIKDFL+SNKEL GKALNFNKAV
Sbjct  552   AVFNLPDLNNLAITSFVRRNLEDKLATKGLSLQEANKLIKDFLNSNKELVGKALNFNKAV  611

Query  601   AEAKSTGNYDEVKKAQKDLEKSlrkrehlekevekklesksGNKNKMEAKAQANSQKDEI  660
             AEAK+TGNYDEVKKAQKDLEKSL+KREHLEKEV KKLESKSGNKNKMEAK+QANSQKDEI
Sbjct  612   AEAKNTGNYDEVKKAQKDLEKSLKKREHLEKEVAKKLESKSGNKNKMEAKSQANSQKDEI  671

Query  661   FALINKEANRDARAIAYTQNLKGIKRELSDKLEKISKDLKDFSKSFDEFKNGKNKDFSKA  720
             FALINKEANRDARAIAY+QNLKGIKRELSDKLE+I+KDLKDFSKSFDEFKNGKNKDFSKA
Sbjct  672   FALINKEANRDARAIAYAQNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKA  731

Query  721   EETLKALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSVKDVI  780
             EETLKALKGSVKDLGINPEWISKVENLN+ALNEFKNGKNKDFSKVTQAKSDLENS+KDVI
Sbjct  732   EETLKALKGSVKDLGINPEWISKVENLNTALNEFKNGKNKDFSKVTQAKSDLENSIKDVI  791

Query  781   INQKVTDKVDNLNQAVSVAKAMGDFSRVEQVLADLKNFSKEQLAQQAQKNEDFNTGKNSE  840
             INQK+TDKVDNLNQAVS+AKA GDFS VEQ LADLKNFSK QLAQQAQKNEDFNTGKNSE
Sbjct  792   INQKITDKVDNLNQAVSIAKATGDFSGVEQALADLKNFSKGQLAQQAQKNEDFNTGKNSE  851

Query  841   LYQSVKNSVNKTLVGNGLSGIEATALAKNFSDIkkelnekfknfnnnnnglknSTEPIYA  900
             +YQSVKN+VN TLVGNGLS  EAT+L+KNFSDI K   E      NNNN      EPIYA
Sbjct  852   IYQSVKNGVNGTLVGNGLSKAEATTLSKNFSDI-KKELEAKLGNFNNNNNNGLKNEPIYA  910

Query  901   KVNKKKTGQVASPEEPIYTQVAKKVNAKIDRLNQIASGLGGVGQAAGFPLKRHDKVDDLS  960
             KVNKKK+GQ ASPEEPIY+QVAKKVNAKIDRLNQIASGLGGVGQAAGFPLKRHDKVDDLS
Sbjct  911   KVNKKKAGQAASPEEPIYAQVAKKVNAKIDRLNQIASGLGGVGQAAGFPLKRHDKVDDLS  970

Query  961   KVGLSASPEPIYATIDDLGGPFPLKRHDKVDDLSKVGRSRNQELAQKIDNLNQAVSEAKA  1020
             KVGLSA+ EPIYATIDDLGG+FPLKRHDKVDDLSKVG SRNQELAQKIDNLNQAVSEAKA
Sbjct  971   KVGLSANHEPIYATIDDLGGSFPLKRHDKVDDLSKVGLSRNQELAQKIDNLNQAVSEAKA  1030

Query  1021  GFFGNLEQTIDKLKDSTKKNVMNLYVESAKKVPASLSAKLDNYAINSHTRINSNIQNGAI  1080
             GFFGNLEQTID+LKDSTK N +NL  ESAKKVPASLSAKLDNYAINSHTRINSN++NGAI
Sbjct  1031  GFFGNLEQTIDNLKDSTKYNSVNLWAESAKKVPASLSAKLDNYAINSHTRINSNVKNGAI  1090

Query  1081  NEKATGMLTQKNPEWLKLVNDKIVAHNVGSVSLSEYDKIGFNQKNMKDYSDSFKFSTKLN  1140
             NEKATGMLTQKNPEWLKLVNDKIVAHNVGSV+LSEYDKIGFNQKNMKDYSDSFKFSTKLN
Sbjct  1091  NEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFSTKLN  1150

Query  1141  NAVKDIKSGFTHFLANAFSTG--YYCLARENAEHGIKNVNTKGGFQKS  1186
             NAVKD KSGFT+FLANAFST+  YY LA ENAEHGIKNVNTKGGFQKS
Sbjct  1151  NAVKDTKSGFTRFLANAFSTASYYYFLAGENAEHGIKNVNTKGGFQKS  1198

9) HPSJM_02765 in NC_014560


> AY330637|20|G20|37811806|AAR03881.1|Helicobacter_pylori_Ca52|+|21859..25455|cagA|HP0547|CagA
Length=1198

 Score = 1665 bits (6321),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1091/1183 (93%), Positives = 1148/1183 (98%), Gaps = 3/1183 (0%)

Query  1     MTNETIDQQPQTEAAFNPQQFINNLQVAFLKLDNAVASFDPDQKPIVDKNDRDNRQAFDG  60
             MTNETI+QQPQTEAAFNPQQFINNLQVAFLK+DNAVAS+DPDQKPIVDKNDRDNRQAF+G
Sbjct  17    MTNETINQQPQTEAAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNRQAFEG  76

Query  61    ISQLREEYSNKAIKNPTKKNQYFSDFINKSNDLINKDALIDVESSTKSFQKFGDQRYRIF  120
             ISQLREEYSNKAIKNPTKKNQYFSDFI+KSNDLINKD L+DVESSTKSFQKFGDQRY+IF
Sbjct  77    ISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNLVDVESSTKSFQKFGDQRYQIF  136

Query  121   TSWVSHQNDPSKINTRSIRNFMEHTIQPPIPDDKEKAEFLKSAKQSFAGIIIGNQIRTDQ  180
             TSWVSHQNDPSKINTRSIRNFME+ IQPPIPDDKEKAEFLKSAKQ+FAGIIIGNQIRTDQ
Sbjct  137   TSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQAFAGIIIGNQIRTDQ  196

Query  181   KFMGVFDESLKERQEAEKNGGPSGGDWLDIFLSFIFDKKQSSDVKEAINQEPVPHVQPDI  240
             KFMGVFDESLKERQEAEKNGGP+GGDWLDIFLSF+F+KKQSSD+KE+++QEPVPHVQPDI
Sbjct  197   KFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSFVFNKKQSSDLKETLDQEPVPHVQPDI  256

Query  241   ATTTTDIQGLPPESRDLLDERGNFSKFTLGDMNMLDVEGVADIDPNYKFNQLLIHNNALS  300
             ATTTTDIQGLPPE+RDLLDERGNFSKFTLGDM+MLDVEGVADIDPNYKFNQLLIHNNALS
Sbjct  257   ATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALS  316

Query  301   SVLMGSHNGIEPEKVSLLYAGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKNGSGLV  360
             SVLMGSHNGIEPEKVSLLY+GNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKNGSGLV
Sbjct  317   SVLMGSHNGIEPEKVSLLYGGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKNGSGLV  376

Query  361   IAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIRNKIDFMEFLAQNNAKLDNLSEKEKEK  420
             IAGGEKGINNPSFYLYKEDQLTGSQRALSQEEI+NKI+FMEFLAQNNAKLDNLSEKEKEK
Sbjct  377   IAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKINFMEFLAQNNAKLDNLSEKEKEK  436

Query  421   FRNEIKDFQKDSKAYLDALGNDRIAFVSKKDPKHSALITEFNKGDLSYTLKDYGKKADKA  480
             FR EI DFQKDSKAYLDALGNDRIAFVSKKD KHSALITEF +GDLSYTLKDYGKKADKA
Sbjct  437   FRTEIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGKKADKA  496

Query  481   LDREKNVTLQGNLKHDGVMFVDYSNFKYTNASKNPNKGVGATNGVSHLDAGFSKVAVFNL  540
             LDREKNVTLQG+LKHDGVMFVDYSNFKYTNASKNPNKGVG TNGVSHL+AGF KVAVFNL
Sbjct  497   LDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFDKVAVFNL  556

Query  541   PDLNNLAINSFVRRNLEDKLVAKGLPPQEANKLIKDFLSSNKELVGKALNFNKAVADAKN  600
             PDLNNLAI SFVRRNLEDKL +KGL+ QEANKLIKDFL+SNKELVGKALNFNKAVA+AKN
Sbjct  557   PDLNNLAITSFVRRNLEDKLATKGLSLQEANKLIKDFLNSNKELVGKALNFNKAVAEAKN  616

Query  601   TGNYDEVKKAQKDLEKSlrkrehlekevekklesksGNKNKMEAKAQANSQKDEIFALIN  660
             TGNYDEVKKAQKDLEKSL+KREHLEKEV KKLESKSGNKNKMEAK+QANSQKDEIFALIN
Sbjct  617   TGNYDEVKKAQKDLEKSLKKREHLEKEVAKKLESKSGNKNKMEAKSQANSQKDEIFALIN  676

Query  661   KEANRDARAITYSQNLKGIKRELSDKLESINKDLKDFSKSFDEFKNGKNKDFSKAEETLK  720
             KEANRDARAI+Y+QNLKGIKRELSDKLE+INKDLKDFSKSFDEFKNGKNKDFSKAEETLK
Sbjct  677   KEANRDARAIAYAQNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKAEETLK  736

Query  721   ALKGSVKDLGINPEWISKVENLNAALNDFKNGKNKDFSKVTQAKIDLENSIKDTIINQKI  780
             ALKGSVKDLGINPEWISKVENLN+ALN+FKNGKNKDFSKVTQAK DLENSIKD IINQKI
Sbjct  737   ALKGSVKDLGINPEWISKVENLNTALNEFKNGKNKDFSKVTQAKSDLENSIKDVIINQKI  796

Query  781   TDKVDDLNQAVSVAKATGDFSRVEQALADLKNFSKEQLAQQTQKNESFNVGKKSEIYQSV  840
             TDKVD+LNQAVS+AKATGDFS VEQALADLKNFSK QLAQQ+QKNE FN GK+SEIYQSV
Sbjct  797   TDKVDNLNQAVSIAKATGDFSGVEQALADLKNFSKGQLAQQAQKNEDFNTGKNSEIYQSV  856

Query  841   KngvngtlvgnglSQVEATTLSKNFSDIKKELNAklfgnfnnnnnnglknEPIYAKVNKK  900
             KNGVNGTLVGNGLS+ EATTLSKNFSDIKKEL+A  +GNFNNNNNNGLKNEPIYAKVNKK
Sbjct  857   KNGVNGTLVGNGLSKAEATTLSKNFSDIKKELEA-KLGNFNNNNNNGLKNEPIYAKVNKK  915

Query  901   KTEQAASPEEPIYTQVAKKVTQKIDRLNQIASGLGGVGQAAGFPLKRHDKVEDLSKVGRS  960
             K+ QAASPEEPIY+QVAKKV  KIDRLNQIASGLGGVGQAAGFPLKRHDKV+DLSKVG S
Sbjct  916   KAGQAASPEEPIYAQVAKKVNAKIDRLNQIASGLGGVGQAAGFPLKRHDKVDDLSKVGLS  975

Query  961   VSPEPIYATIDDLGGPFPLKRHDKVDDLSKVGLSREQQLKQKIDNLSQAVSEAKAGFFGN  1020
              + EPIYATIDDLGG+FPLKRHDKVDDLSKVGLSR+Q+L QKIDNL+QAVSEAKAGFFGN
Sbjct  976   ANHEPIYATIDDLGGSFPLKRHDKVDDLSKVGLSRNQELAQKIDNLNQAVSEAKAGFFGN  1035

Query  1021  LEQTIDKLKDSTKHNPMNLWVESAKKVPTSLSAKLDNYATNSHTRINSNIKNGAINEKAT  1080
             LEQTID+LKDSTK N++NLW ESAKKVP+SLSAKLDNYA NSHTRINSN+KNGAINEKAT
Sbjct  1036  LEQTIDNLKDSTKYNSVNLWAESAKKVPASLSAKLDNYAINSHTRINSNVKNGAINEKAT  1095

Query  1081  GMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFSTKLNNAVKD  1140
             GMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFSTKLNNAVKD
Sbjct  1096  GMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFSTKLNNAVKD  1155

Query  1141  VKSGFTQFLANAFSTG--YYCLAGENAEHGIKNVNTKGGFQKS  1181
              KSGFT+FLANAFST+  YY LAGENAEHGIKNVNTKGGFQKS
Sbjct  1156  TKSGFTRFLANAFSTASYYYFLAGENAEHGIKNVNTKGGFQKS  1198

10) HPPC_02715 in NC_014555


> AY330637|20|G20|37811806|AAR03881.1|Helicobacter_pylori_Ca52|+|21859..25455|cagA|HP0547|CagA
Length=1198

 Score = 1657 bits (6294),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1105/1202 (92%), Positives = 1156/1202 (97%), Gaps = 22/1202 (1%)

Query  1     MTNETIDQQPQTGAAFNPQQFINNLQVAFLKLDNAVASFDPDQKPIVDKNDRDNRQAFDG  60
             MTNETI+QQPQT AAFNPQQFINNLQVAFLK+DNAVAS+DPDQKPIVDKNDRDNRQAF+G
Sbjct  17    MTNETINQQPQTEAAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNRQAFEG  76

Query  61    ISQLREEYSNKAIKNPTKKNQYFSDFINKSNDLINKDNLIDVESSTKSFQKFGDQRYRIF  120
             ISQLREEYSNKAIKNPTKKNQYFSDFI+KSNDLINKDNL+DVESSTKSFQKFGDQRY+IF
Sbjct  77    ISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNLVDVESSTKSFQKFGDQRYQIF  136

Query  121   TSWVSHQNDPSKINTRSIRNFMENIIQPPIHDDKEKAEFLKSAKQSFAGIIIGNQIRTDQ  180
             TSWVSHQNDPSKINTRSIRNFMENIIQPPI DDKEKAEFLKSAKQ+FAGIIIGNQIRTDQ
Sbjct  137   TSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQAFAGIIIGNQIRTDQ  196

Query  181   KFMGVFDESLKERQEAEKNGEPTGGDWLDIFLSFIFNKKQSSDVKEAINQEPVPHVQPDI  240
             KFMGVFDESLKERQEAEKNG PTGGDWLDIFLSF+FNKKQSSD+KE+++QEPVPHVQPDI
Sbjct  197   KFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSFVFNKKQSSDLKETLDQEPVPHVQPDI  256

Query  241   ATSTTHIQGLPPESRDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALS  300
             AT+TT+IQGLPPE+RDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALS
Sbjct  257   ATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALS  316

Query  301   SVLMGSHNGIEPEKVSLLYAGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKNGSGLV  360
             SVLMGSHNGIEPEKVSLLY+GNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKNGSGLV
Sbjct  317   SVLMGSHNGIEPEKVSLLYGGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKNGSGLV  376

Query  361   IAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKVDFMEFLAQNNAKLDNLSEKEKEK  420
             IAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNK++FMEFLAQNNAKLDNLSEKEKEK
Sbjct  377   IAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKINFMEFLAQNNAKLDNLSEKEKEK  436

Query  421   FRTEIENFQKNPKAYLDALGNDRIAFVSKKDPKHSALITEFGKGDLSYTLKDYGKKADKA  480
             FRTEIE+FQK++KAYLDALGNDRIAFVSKKD KHSALITEFG+GDLSYTLKDYGKKADKA
Sbjct  437   FRTEIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGKKADKA  496

Query  481   LDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLDAGFSKVAVFNL  540
             LDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHL+AGF KVAVFNL
Sbjct  497   LDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFDKVAVFNL  556

Query  541   PDLNNLAITSFVRRNLEDKLTAKGLSLQEANKLIKDFLSSNKELVGKALNFNKAVAEAKN  600
             PDLNNLAITSFVRRNLEDKL++KGLSLQEANKLIKDFL+SNKELVGKALNFNKAVAEAKN
Sbjct  557   PDLNNLAITSFVRRNLEDKLATKGLSLQEANKLIKDFLNSNKELVGKALNFNKAVAEAKN  616

Query  601   TGNYDEVKKAQKDLEKSlrkrehlekevekklesksGNKNKMEAKSQANSQKDEIFALIN  660
             TGNYDEVKKAQKDLEKSL+KREHLEKEV KKLESKSGNKNKMEAKSQANSQKDEIFALIN
Sbjct  617   TGNYDEVKKAQKDLEKSLKKREHLEKEVAKKLESKSGNKNKMEAKSQANSQKDEIFALIN  676

Query  661   KEANRDARAIAYSQNLKGIKRELSDKLESINKDLKDFSKSFDALKSGKNKDFSNAEETLK  720
             KEANRDARAIAY+QNLKGIKRELSDKLE+INKDLKDFSKSFD +K+GKNKDFS+AEETLK
Sbjct  677   KEANRDARAIAYAQNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKAEETLK  736

Query  721   ALKSSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSVKDVIINQKV  780
             ALK+SVKDLGINPEWISKVENLN+ALNEFKNGKNKDFSKVTQAKSDLENS+KDVIINQK+
Sbjct  737   ALKGSVKDLGINPEWISKVENLNTALNEFKNGKNKDFSKVTQAKSDLENSIKDVIINQKI  796

Query  781   TDKVDDLNQAVSVAKATGDFSRVEQALADLKNFSKEQLVQQAQKNESFNVGKKSEIYQSV  840
             TDKVD+LNQAVS+AKATGDFS VEQALADLKNFSK QL QQAQKNE FN GK+SEIYQSV
Sbjct  797   TDKVDNLNQAVSIAKATGDFSGVEQALADLKNFSKGQLAQQAQKNEDFNTGKNSEIYQSV  856

Query  841   KngvngtlvgnglSQAEATTLSKNFSDIKKELNAKLFGnnnnnnnnGLKNEPIYAKVNKK  900
             KNGVNGTLVGNGLS+AEATTLSKNFSDIKKEL+AKL GN NNNNNNGLKNEPIYAKVNKK
Sbjct  857   KNGVNGTLVGNGLSKAEATTLSKNFSDIKKELEAKL-GNFNNNNNNGLKNEPIYAKVNKK  915

Query  901   KTGQVASPEEPIYAKVNKKKTGQVASPEEPIYAQVAKKVNAKIDRLNQIASGLGGVGQAA  960
             K+GQ ASPEEPI                   YAQVAKKVNAKIDRLNQIASGLGGVGQAA
Sbjct  916   KAGQAASPEEPI-------------------YAQVAKKVNAKIDRLNQIASGLGGVGQAA  956

Query  961   GFPLKRHDKVDDLSKVGRSVSPEPIYATIDDLGGPFPLKRHDKVDDLSKVGLSREQKLAQ  1020
             GFPLKRHDKVDDLSKVG S + EPIYATIDDLGG+FPLKRHDKVDDLSKVGLSR+Q LAQ
Sbjct  957   GFPLKRHDKVDDLSKVGLSANHEPIYATIDDLGGSFPLKRHDKVDDLSKVGLSRNQELAQ  1016

Query  1021  KIDNLNQAVSEAKAGFFGNLEQTIDKLKDSTKNNTVNLWAESAKKVPASLSAKLDNYATN  1080
             KIDNLNQAVSEAKAGFFGNLEQTID+LKDSTK N+VNLWAESAKKVPASLSAKLDNYA N
Sbjct  1017  KIDNLNQAVSEAKAGFFGNLEQTIDNLKDSTKYNSVNLWAESAKKVPASLSAKLDNYAIN  1076

Query  1081  SHTRINSNIHNGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNM  1140
             SHTRINSN+ NGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNM
Sbjct  1077  SHTRINSNVKNGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNM  1136

Query  1141  KDYSDSFKFSTKLNNAVKDVKSGFTQFLANAFSTG--YYCLARENAEHGIKNVNTKGGFQ  1198
             KDYSDSFKFSTKLNNAVKD KSGFT+FLANAFST+  YY LA ENAEHGIKNVNTKGGFQ
Sbjct  1137  KDYSDSFKFSTKLNNAVKDTKSGFTRFLANAFSTASYYYFLAGENAEHGIKNVNTKGGFQ  1196

Query  1199  KS  1200
             KS
Sbjct  1197  KS  1198

11) HPSNT_02820 in NC_017376


> AY330637|20|G20|37811806|AAR03881.1|Helicobacter_pylori_Ca52|+|21859..25455|cagA|HP0547|CagA
Length=1198

 Score = 1645 bits (6248),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1091/1168 (94%), Positives = 1140/1168 (98%), Gaps = 2/1168 (0%)

Query  20    AFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNRQAFDGISQLREEYSNKAIK  79
             AFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNRQAF+GISQLREEYSNKAIK
Sbjct  31    AFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNRQAFEGISQLREEYSNKAIK  90

Query  80    NPTKKNQYFSDFINKSNDLINKDALIDVESSTKSFQKFGDQRYRIFTSWVSHQNDPSKIN  139
             NPTKKNQYFSDFI+KSNDLINKD L+DVESSTKSFQKFGDQRY+IFTSWVSHQNDPSKIN
Sbjct  91    NPTKKNQYFSDFIDKSNDLINKDNLVDVESSTKSFQKFGDQRYQIFTSWVSHQNDPSKIN  150

Query  140   TRSIRNFMENIIQPPISDDKEKAEFLKSAKQSFAGIIIGNQIRTDQKFMGVFDESLKERQ  199
             TRSIRNFMENIIQPPI+DDKEKAEFLKSAKQ+FAGIIIGNQIRTDQKFMGVFDESLKERQ
Sbjct  151   TRSIRNFMENIIQPPIPDDKEKAEFLKSAKQAFAGIIIGNQIRTDQKFMGVFDESLKERQ  210

Query  200   EAEKNGEPTGGDWLDIFLSFIFDKKQSSDVKEAINQEPVPHVQPDIATTTTHIQGLPPES  259
             EAEKNG PTGGDWLDIFLSF+F+KKQSSD+KE+++QEPVPHVQPDIATTTT+IQGLPPE+
Sbjct  211   EAEKNGGPTGGDWLDIFLSFVFNKKQSSDLKETLDQEPVPHVQPDIATTTTDIQGLPPEA  270

Query  260   RDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALSSVLMGSHNGIEPEK  319
             RDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALSSVLMGSHNGIEPEK
Sbjct  271   RDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALSSVLMGSHNGIEPEK  330

Query  320   VSLLYAGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKNGSGLVIAGGEKGINNPSFY  379
             VSLLY+GNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKNGSGLVIAGGEKGINNPSFY
Sbjct  331   VSLLYGGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKNGSGLVIAGGEKGINNPSFY  390

Query  380   LYKEDQLTGSQRALSQEEIRNKIDFMEFLAQNNAKLDNLSEKEKEKFRNEIKDFQKDSKA  439
             LYKEDQLTGSQRALSQEEI+NKI+FMEFLAQNNAKLDNLSEKEKEKFR EI DFQKDSKA
Sbjct  391   LYKEDQLTGSQRALSQEEIQNKINFMEFLAQNNAKLDNLSEKEKEKFRTEIEDFQKDSKA  450

Query  440   YLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGKKADKALDRETKTTLQGSLK  499
             YLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGKKADKALDRE + TLQGSLK
Sbjct  451   YLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGKKADKALDREKNVTLQGSLK  510

Query  500   HDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFDKVAVFnlsnlnnlTITSFIRQ  559
             HDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFDKVAVFNL++LNNL+ITSF+R+
Sbjct  511   HDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFDKVAVFNLPDLNNLAITSFVRR  570

Query  560   DLEDKLVAKGLSPQEANKLIKDFLSNNKELVGKVSNFNKAVAEAKNTGNYDEVKKAQKDL  619
             +LEDKL +KGLS QEANKLIKDFL++NKELVGK  NFNKAVAEAKNTGNYDEVKKAQKDL
Sbjct  571   NLEDKLATKGLSLQEANKLIKDFLNSNKELVGKALNFNKAVAEAKNTGNYDEVKKAQKDL  630

Query  620   EKSLRKREHLEKEVAKNLESKSGNKNKMEAKSQANSQKDEIFALINKeatrearaaayaS  679
             EKSL+KREHLEKEVAK+LESKSGNKNKMEAKSQANSQKDEIFALINKEA R+ARA AYA 
Sbjct  631   EKSLKKREHLEKEVAKKLESKSGNKNKMEAKSQANSQKDEIFALINKEANRDARAIAYAQ  690

Query  680   NLKGIKRELSDKLENINKNLKGFDKSFDEFKNGKNKDFSKAEETLKALKGSVKDLGINPE  739
             NLKGIKRELSDKLENINK+LK+F KSFDEFKNGKNKDFSKAEETLKALKGSVKDLGINPE
Sbjct  691   NLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKAEETLKALKGSVKDLGINPE  750

Query  740   WISKVENLNAALNEFKNGKNKDFSKVTQAKNDLENSVKDVIINQKITDKVDNLNQAVSVA  799
             WISKVENLN+ALNEFKNGKNKDFSKVTQAK+DLENS+KDVIINQKITDKVDNLNQAVS+A
Sbjct  751   WISKVENLNTALNEFKNGKNKDFSKVTQAKSDLENSIKDVIINQKITDKVDNLNQAVSIA  810

Query  800   KVTGDFSSVEQALADLKNFSKEQLAQQAQKNEDFNTGKNSALYQSVKngvngtlvgnglS  859
             K TGDFS+VEQALADLKNFSK QLAQQAQKNEDFNTGKNS +YQSVKNGVNGTLVGNGLS
Sbjct  811   KATGDFSGVEQALADLKNFSKGQLAQQAQKNEDFNTGKNSEIYQSVKNGVNGTLVGNGLS  870

Query  860   KAEATTLSKNFSDIKKElnaklgnfnnnnnnglknEPIYAKVNKKKAGQAASLEEPIYAQ  919
             KAEATTLSKNFSDIKKEL+AKLGNFNNNNNNGLKNEPIYAKVNKKKAGQAAS EEPIYAQ
Sbjct  871   KAEATTLSKNFSDIKKELEAKLGNFNNNNNNGLKNEPIYAKVNKKKAGQAASPEEPIYAQ  930

Query  920   VAKKVNAKIDQLNQAASGLGGVGQAAGIPLKRHDKVDDLSKVGLSASPEPIYATIDDLGG  979
             VAKKVNAKID+LNQ ASGLGGVGQAAG+PLKRHDKVDDLSKVGLSA+ EPIYATIDDLGG
Sbjct  931   VAKKVNAKIDRLNQIASGLGGVGQAAGFPLKRHDKVDDLSKVGLSANHEPIYATIDDLGG  990

Query  980   PFPLKRHDKVDDLSKVGLSRNQELAQKIDNLNQAVSEAKAGFFGNLEQTIDKLKDSTKHN  1039
             +FPLKRHDKVDDLSKVGLSRNQELAQKIDNLNQAVSEAKAGFFGNLEQTID+LKDSTK N
Sbjct  991   SFPLKRHDKVDDLSKVGLSRNQELAQKIDNLNQAVSEAKAGFFGNLEQTIDNLKDSTKYN  1050

Query  1040  PMNLWVESAKKVPASLSAKLDNYATNSHTRINSNIKNGAINEKATGMLTQKNPEWLKLVN  1099
             ++NLW ESAKKVPASLSAKLDNYA NSHTRINSN+KNGAINEKATGMLTQKNPEWLKLVN
Sbjct  1051  SVNLWAESAKKVPASLSAKLDNYAINSHTRINSNVKNGAINEKATGMLTQKNPEWLKLVN  1110

Query  1100  DKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFSTKLNNAAKDIKSGFTQFLANAFST  1159
             DKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFSTKLNNA KD KSGFT+FLANAFST
Sbjct  1111  DKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDTKSGFTRFLANAFST  1170

Query  1160  G--YYCLAGENAEHGIKNVNTKGGFQKS  1185
             +  YY LAGENAEHGIKNVNTKGGFQKS
Sbjct  1171  ASYYYFLAGENAEHGIKNVNTKGGFQKS  1198

12) HPIN_04145 in NC_017372


> AY330637|20|G20|37811806|AAR03881.1|Helicobacter_pylori_Ca52|+|21859..25455|cagA|HP0547|CagA
Length=1198

 Score = 1624 bits (6165),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1095/1216 (91%), Positives = 1151/1216 (95%), Gaps = 36/1216 (2%)

Query  1     MTNETINQQPQAEAAFNPRQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNRQAFDG  60
             MTNETINQQPQ+EAAFNP+QFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNRQAF+G
Sbjct  17    MTNETINQQPQTEAAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNRQAFEG  76

Query  61    ISQLREEYSNKAIKNPTKKNQYFSDFINKSNDLINKDALIDVESSTKSFQKFGDQRYRIF  120
             ISQLREEYSNKAIKNPTKKNQYFSDFI+KSNDLINKD L+DVESSTKSFQKFGDQRY+IF
Sbjct  77    ISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNLVDVESSTKSFQKFGDQRYQIF  136

Query  121   TSWVSHQNDPSKINTRSIRNFMENIIQPPISDDKEKAEFLKSAKQSFAGIIIGNQIRTDQ  180
             TSWVSHQNDPSKINTRSIRNFMENIIQPPI+DDKEKAEFLKSAKQ+FAGIIIGNQIRTDQ
Sbjct  137   TSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQAFAGIIIGNQIRTDQ  196

Query  181   KFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSFIFDKKQSSDVKEAINQEPVPHVQPDI  240
             KFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSF+F+KKQSSD+KE+++QEPVPHVQPDI
Sbjct  197   KFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSFVFNKKQSSDLKETLDQEPVPHVQPDI  256

Query  241   ATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALS  300
             ATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALS
Sbjct  257   ATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALS  316

Query  301   SVLMGSHNGIEPEKVSLLYGDNGGPGARHDWNATVGYKDQQGNNVATIINVHMKNGSGLV  360
             SVLMGSHNGIEPEKVSLLYG+NGG GA+HDWNATVGYKDQQGNNVATIINVHMKNGSGLV
Sbjct  317   SVLMGSHNGIEPEKVSLLYGGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKNGSGLV  376

Query  361   IAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIRNKIDFMEFLAQNNAKLDNLSEKEKEK  420
             IAGGEKGINNPSFYLYKEDQLTGSQRALSQEEI+NKI+FMEFLAQNNAKLDNLSEKEKEK
Sbjct  377   IAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKINFMEFLAQNNAKLDNLSEKEKEK  436

Query  421   FRTEIKDFQKDSKAYLDALGNDRIAFVSKKDTKYSALITGFGNGDLSYTLKDYGKKADKA  480
             FRTEI DFQKDSKAYLDALGNDRIAFVSKKDTK SALIT FGNGDLSYTLKDYGKKADKA
Sbjct  437   FRTEIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGKKADKA  496

Query  481   LDREAKITLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFNKVAVFNL  540
             LDRE ++TLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGF+KVAVFNL
Sbjct  497   LDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFDKVAVFNL  556

Query  541   PNLNNLAITNFIRRDLEDKLIAKGLSPQEANKIIKDFLSNNKELVGKVSNFNKAVAEAKN  600
             P+LNNLAIT+F+RR+LEDKL +KGLS QEANK+IKDFL++NKELVGK  NFNKAVAEAKN
Sbjct  557   PDLNNLAITSFVRRNLEDKLATKGLSLQEANKLIKDFLNSNKELVGKALNFNKAVAEAKN  616

Query  601   TGNYDEVKKAQKDLEKSLKKRGHLEKDVaknleskssnknkmeaksQANSQKDEIFALIn  660
             TGNYDEVKKAQKDLEKSLKKR HLEK+VAK+LESKS+NKNKMEAKSQANSQKDEIFALIN
Sbjct  617   TGNYDEVKKAQKDLEKSLKKREHLEKEVAKKLESKSGNKNKMEAKSQANSQKDEIFALIN  676

Query  661   keanrearaaaYTQNLKDIKRELSDKLENVNKNLKDFSKSFDEFKNGKNKDFSKAEETLK  720
             KEANR+ARA AY+QNLK+IKRELSDKLEN+NK+LKDFSKSFDEFKNGKNKDFSKAEETLK
Sbjct  677   KEANRDARAIAYAQNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKAEETLK  736

Query  721   ALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSVKDVIINQKI  780
             ALKGSVKDLGINPEWISKVENLN+ALNEFKNGKNKDFSKVTQAKSDLENS+KDVIINQKI
Sbjct  737   ALKGSVKDLGINPEWISKVENLNTALNEFKNGKNKDFSKVTQAKSDLENSIKDVIINQKI  796

Query  781   TDKVDNLNQAVSVAKATGDFSRVEQALADLKNFSKEQLAQQAQKNEDFNTGKKSEIYQSV  840
             TDKVDNLNQAVS+AKATGDFS VEQALADLKNFSK QLAQQAQKNEDFNTGK+SEIYQSV
Sbjct  797   TDKVDNLNQAVSIAKATGDFSGVEQALADLKNFSKGQLAQQAQKNEDFNTGKNSEIYQSV  856

Query  841   KngvngtlvgnglSQAEATTLSKNFSDIKKELKAklgnfnnnnnglkn-EPIYAKVNKKK  899
             KNGVNGTLVGNGLS+AEATTLSKNFSDIKKEL AKLGNFNNNNN   + EPIYAKVNKKK
Sbjct  857   KNGVNGTLVGNGLSKAEATTLSKNFSDIKKELEAKLGNFNNNNNNGLKNEPIYAKVNKKK  916

Query  900   AGQAASLEEPIYAQVAKKVNAKIDRLNQIASGLGNVGQAAGFPLKKHDKVDDLSKVGLSA  959
             AGQAAS EEPIYAQVAKKVNAKIDRLNQIASGLG VGQAAG                   
Sbjct  917   AGQAASPEEPIYAQVAKKVNAKIDRLNQIASGLGGVGQAAG-------------------  957

Query  960   SPEPIYATIDDLGGPFPLKKHDKVDDLSKVGLSASPEPIYATIDDLGGPFPLKRHDKVDD  1019
                            FPLK+HDKVDDLSKVGLSA+ EPIYATIDDLGG+FPLKRHDKVDD
Sbjct  958   ---------------FPLKRHDKVDDLSKVGLSANHEPIYATIDDLGGSFPLKRHDKVDD  1002

Query  1020  LSKVGLSRNQELAQKIDNLNQAVSEAKAGFFGNLEQTIDKLKDSAKHNPMNLWVESAKQV  1079
             LSKVGLSRNQELAQKIDNLNQAVSEAKAGFFGNLEQTID+LKDS+K N++NLW ESAK+V
Sbjct  1003  LSKVGLSRNQELAQKIDNLNQAVSEAKAGFFGNLEQTIDNLKDSTKYNSVNLWAESAKKV  1062

Query  1080  PASLSAKLDNYATNSHTRISSNIKNGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGSVS  1139
             PASLSAKLDNYA NSHTRI+SN+KNGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGSV+
Sbjct  1063  PASLSAKLDNYAINSHTRINSNVKNGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGSVP  1122

Query  1140  LSEYDKIGFNQKNMKDYSDSFKFSTKLNNAAKDIKSGFTQFLTNIFSTASYYC-LAGENA  1198
             LSEYDKIGFNQKNMKDYSDSFKFSTKLNNA KD KSGFT+FL+N FSTASYY  LAGENA
Sbjct  1123  LSEYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDTKSGFTRFLANAFSTASYYYFLAGENA  1182

Query  1199  EHGIKNANTKGGFQKS  1214
             EHGIKN NTKGGFQKS
Sbjct  1183  EHGIKNVNTKGGFQKS  1198

13) cagA in NC_011333


> AY330637|20|G20|37811806|AAR03881.1|Helicobacter_pylori_Ca52|+|21859..25455|cagA|HP0547|CagA
Length=1198

 Score = 1624 bits (6168),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1089/1214 (90%), Positives = 1139/1214 (94%), Gaps = 38/1214 (3%)

Query  1     MTNETINQQPQTEAAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNRQAFNG  60
             MTNETINQQPQTEAAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNRQAF+G
Sbjct  17    MTNETINQQPQTEAAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNRQAFEG  76

Query  61    ISQLREEYSNKAIKNPAKKNQYFSDFIDKSNNLINKDALIDVESSTKSFQKFGDQRYQIF  120
             ISQLREEYSNKAIKNP+KKNQYFSDFIDKSN+LINKD L+DVESSTKSFQKFGDQRYQIF
Sbjct  77    ISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNLVDVESSTKSFQKFGDQRYQIF  136

Query  121   TSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQSFAGIIIGNQIRTDQ  180
             TSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQ+FAGIIIGNQIRTDQ
Sbjct  137   TSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQAFAGIIIGNQIRTDQ  196

Query  181   KFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSFIFDKKQSSDVKEAINQEPVPHVQPDI  240
             KFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSF+F+KKQSSD+KE+++QEPVPHVQPDI
Sbjct  197   KFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSFVFNKKQSSDLKETLDQEPVPHVQPDI  256

Query  241   ATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALS  300
             ATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALS
Sbjct  257   ATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALS  316

Query  301   SVLMGSHNGIEPEKVSLLYGGNGGPKAKHDWNATVGYKDQQGNNVATIINVHMKNGSGLV  360
             SVLMGSHNGIEPEKVSLLYGGNGG  AKHDWNATVGYKDQQGNNVATIINVHMKNGSGLV
Sbjct  317   SVLMGSHNGIEPEKVSLLYGGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKNGSGLV  376

Query  361   IAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIRNKVDFMEFLAQNNAKLDNLSEKEEEK  420
             IAGGEKGINNPSFYLYKEDQLTGSQRALSQEEI+NK++FMEFLAQNNAKLDNLSEKE EK
Sbjct  377   IAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKINFMEFLAQNNAKLDNLSEKEKEK  436

Query  421   FRNEIKDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGKKADKA  480
             FR EI DFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGKKADKA
Sbjct  437   FRTEIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGKKADKA  496

Query  481   LDREKNVTLQGNLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFSKVAVFNL  540
             LDREKNVTLQG+LKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGF KVAVFNL
Sbjct  497   LDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFDKVAVFNL  556

Query  541   PDLNNLAITSLVRRDLEDKLIAKGLSPQETNKLVKDFLSSNKELVGKALNFNKAVAEAKN  600
             PDLNNLAITS+VRR+LEDKL +KGLS QE+NKL+KDFL+SNKELVGKALNFNKAVAEAKN
Sbjct  557   PDLNNLAITSFVRRNLEDKLATKGLSLQEANKLIKDFLNSNKELVGKALNFNKAVAEAKN  616

Query  601   TGNYDEVKQAQkdlekslkkrerlekevakkleSKSGNKNKMEAKSQANSQKDEIFALIN  660
             TGNYDEVK+AQKDLEKSLKKRE+LEKEVAKKLESKSGNKNKMEAKSQANSQKDEIFALIN
Sbjct  617   TGNYDEVKKAQKDLEKSLKKREHLEKEVAKKLESKSGNKNKMEAKSQANSQKDEIFALIN  676

Query  661   KEANREARAITYAQNLKGIKRELSDKLENVNKNLKDFSKSFDEFKNGKNKDFSKSEETLK  720
             KEANR+ARAI+YAQNLKGIKRELSDKLEN+NK+LKDFSKSFDEFKNGKNKDFSK+EETLK
Sbjct  677   KEANRDARAIAYAQNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKAEETLK  736

Query  721   ALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSVKDVIINQKV  780
             ALKGSVKDLGINPEWISKVENLN+ALNEFKNGKNKDFSKVTQAKSDLENS+KDVIINQK+
Sbjct  737   ALKGSVKDLGINPEWISKVENLNTALNEFKNGKNKDFSKVTQAKSDLENSIKDVIINQKI  796

Query  781   TDKVDNLNQAVSVAKATGDFSRVEQALADLKNFSKEQLAQQAQKNEDFNTGKNSALYQSV  840
             TDKVDNLNQAVS+AKATGDFS VEQALADLKNFSK QLAQQAQKNEDFNTGKNS +YQSV
Sbjct  797   TDKVDNLNQAVSIAKATGDFSGVEQALADLKNFSKGQLAQQAQKNEDFNTGKNSEIYQSV  856

Query  841   KngvngtlvgnglSKAEATTLSKNFSDIKKElnaklgnfnnnnnnglknSTEPIYAKVNK  900
             KNGVNGTLVGNGLSKAEATTLSKNFSDIKKE        N NNNN      EPIYAKVNK
Sbjct  857   KNGVNGTLVGNGLSKAEATTLSKNFSDIKKE--LEAKLGNFNNNNNNGLKNEPIYAKVNK  914

Query  901   KKAGQAASPEEPIYAQVAKKVNAKIDRLNQIASGLGVVGQAVGFPLKRHDKVGDLSKVGQ  960
             KKAGQAASPEEPIYAQVAKKVNAKIDRLNQIASGLG VGQA GFPLKRHDKV+DLSKVG 
Sbjct  915   KKAGQAASPEEPIYAQVAKKVNAKIDRLNQIASGLGGVGQAAGFPLKRHDKVDDLSKVGL  974

Query  961   SVSPEPIYATIDDLGGPFPLKRHDKVGDLSKVGLSVSPEPIYATIDDLGGPFPLKRHDKV  1020
             S + EPIYATIDDLGG+FPLKRHDKV+DLSKVG                           
Sbjct  975   SANHEPIYATIDDLGGSFPLKRHDKVDDLSKVG---------------------------  1007

Query  1021  GDLSKVGLSREQQLKQKIDNLSQAVSEAKAGFFGNLEQTIDNLKDSAKNNPVSLWAEGAK  1080
                    LSR+Q+L QKIDNL+QAVSEAKAGFFGNLEQTIDNLKDS+K N+V+LWAE+AK
Sbjct  1008  -------LSRNQELAQKIDNLNQAVSEAKAGFFGNLEQTIDNLKDSTKYNSVNLWAESAK  1060

Query  1081  KVPASLSAKLDNYATNSHTRINSNIQSGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGS  1140
             KVPASLSAKLDNYA NSHTRINSN+++GAINEKATGMLTQKNPEWLKLVNDKIVAHNVGS
Sbjct  1061  KVPASLSAKLDNYAINSHTRINSNVKNGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGS  1120

Query  1141  VPLLEYDKIGFNQKSMKDYSDSFKFSTELNNAVKDVKSGFTQFLANAFSTG--YYRLAGE  1198
             VPL EYDKIGFNQK+MKDYSDSFKFST LNNAVKD KSGFT+FLANAFST+  YY LAGE
Sbjct  1121  VPLSEYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDTKSGFTRFLANAFSTASYYYFLAGE  1180

Query  1199  NAEHGIKNVNTKGG  1212
             NAEHGIKNVNTKGG
Sbjct  1181  NAEHGIKNVNTKGG  1194

14) hp2017_0529 in NC_017374


> AY330637|20|G20|37811806|AAR03881.1|Helicobacter_pylori_Ca52|+|21859..25455|cagA|HP0547|CagA
Length=1198

 Score = 1612 bits (6120),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1058/1188 (90%), Positives = 1130/1188 (96%), Gaps = 10/1188 (0%)

Query  1     MTNETIDQQPQTEAAFNPQQFINNLQVAFLKVDNAIASFDPDQKPIVDKNDRDNRQAFDG  60
             MTNETI+QQPQTEAAFNPQQFINNLQVAFLKVDNA+AS+DPDQKPIVDKNDRDNRQAF+G
Sbjct  17    MTNETINQQPQTEAAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNRQAFEG  76

Query  61    ISQLREEYSNKAIKNPTKKNQYFSDFINKSNDLINKDNLIDVESSTKSFQKFGDQRYRIF  120
             ISQLREEYSNKAIKNPTKKNQYFSDFI+KSNDLINKDNL+DVESSTKSFQKFGDQRY+IF
Sbjct  77    ISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNLVDVESSTKSFQKFGDQRYQIF  136

Query  121   TSWVSHQNDPSKINTRSIRNFMEHAIQPPIPDDKEKAEFLKSAKQSFAGIIIGNQIRTDQ  180
             TSWVSHQNDPSKINTRSIRNFME+ IQPPIPDDKEKAEFLKSAKQ+FAGIIIGNQIRTDQ
Sbjct  137   TSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQAFAGIIIGNQIRTDQ  196

Query  181   KFMGVFDESLKERQEAEKNGGSTGGDWLDIFLSFIFDKKQSSDVKEAINQEPVPHVQPDI  240
             KFMGVFDESLKERQEAEKNGG+TGGDWLDIFLSF+F+KKQSSD+KE+++QEPVPHVQPDI
Sbjct  197   KFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSFVFNKKQSSDLKETLDQEPVPHVQPDI  256

Query  241   ATSTTHIQGLPPESRDLLDERGNFSKFTLGDMEMLDVEGVADMDPNYKFNQLLIHNNALS  300
             AT+TT+IQGLPPE+RDLLDERGNFSKFTLGDMEMLDVEGVAD+DPNYKFNQLLIHNNALS
Sbjct  257   ATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALS  316

Query  301   SVLMGSHDGIEPEKVSLLYAGNGGFGDKHDWNATVGYKDQQGNNVATIINVHMKNGSGLI  360
             SVLMGSH+GIEPEKVSLLY+GNGGFG KHDWNATVGYKDQQGNNVATIINVHMKNGSGL+
Sbjct  317   SVLMGSHNGIEPEKVSLLYGGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKNGSGLV  376

Query  361   IAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKIDFMEFLAQNNAkldslsekekek  420
             IAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKI+FMEFLAQNNAKLD+LSEKEKEK
Sbjct  377   IAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKINFMEFLAQNNAKLDNLSEKEKEK  436

Query  421   fkneikdfQKDSKPYLDALGNDRIAFVSKKDPKHSALITEFNKGDLSYTLKDYGKKADKA  480
             F+ EI DFQKDSK+YLDALGNDRIAFVSKKD KHSALITEF +GDLSYTLKDYGKKADKA
Sbjct  437   FRTEIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGKKADKA  496

Query  481   LDREKNVTLQGNLKHDGVMFVNYSNFKYTNASKSPNKGVGVTNGVSHLEAGFSKVAVFNL  540
             LDREKNVTLQG+LKHDGVMFV+YSNFKYTNASK+PNKGVGVTNGVSHLEAGF KVAVFNL
Sbjct  497   LDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFDKVAVFNL  556

Query  541   PNLNNLAITSVVRRDLEDKLIAKGLSPQEANKLVKDFLSSNKELVGKALNFNKAVAEAKN  600
             P+LNNLAITS VRR+LEDKL +KGLS QEANKL+KDFL+SNKELVGKALNFNKAVAEAKN
Sbjct  557   PDLNNLAITSFVRRNLEDKLATKGLSLQEANKLIKDFLNSNKELVGKALNFNKAVAEAKN  616

Query  601   TGNYDEVKRAQKDLEKSLKKREHLEKDVAKNLESKSGNKNKMEVKSQANSQKDEIFALIN  660
             TGNYDEVK+AQKDLEKSLKKREHLEK+VAK+LESKSGNKNKME KSQANSQKDEIFALIN
Sbjct  617   TGNYDEVKKAQKDLEKSLKKREHLEKEVAKKLESKSGNKNKMEAKSQANSQKDEIFALIN  676

Query  661   KEANRDARAIAYAQNLKDIKRELSDKLENISKDLKDFSKSFDEFKNGKSKDFSKVEETLK  720
             KEANRDARAIAYAQNLK+IKRELSDKLENI+KDLKDFSKSFDEFKNGK+KDFSK EETLK
Sbjct  677   KEANRDARAIAYAQNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKAEETLK  736

Query  721   ALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSIKDVIINQKI  780
             ALKGSVKDLGINPEWISKVENLN+ALNEFKNGKNKDFSKVTQAKSDLENSIKDVIINQKI
Sbjct  737   ALKGSVKDLGINPEWISKVENLNTALNEFKNGKNKDFSKVTQAKSDLENSIKDVIINQKI  796

Query  781   TDKVDNLNQAVSMAKIAGNFSGVEQALADLKNFSKEQLAQQAQKNESFNVGK-SEIYQSv  839
             TDKVDNLNQAVS+AK +G+FSGVEQALADLKNFSK QLAQQAQKNE FN GK SEIYQSV
Sbjct  797   TDKVDNLNQAVSIAKATGDFSGVEQALADLKNFSKGQLAQQAQKNEDFNTGKNSEIYQSV  856

Query  840   kngvngtlvgnglsgIEATALAKNFSDIkkelnekfknfnnnnnglkngkDKGPEEPIYA  899
             KNGVNGTLVGNGLS  EAT+L+KNFSDI      K     +  N  +N ++   +EPIYA
Sbjct  857   KNGVNGTLVGNGLSKAEATTLSKNFSDI------KKELEAKLGNFNNNNNNGLKNEPIYA  910

Query  900   QVNKKKTGQVASPEEPIYAQVAKKVTQKIDQLNQAASGFGGVGQ-AGFPLKRHDKVEDLS  958
             +VNKKK+GQ ASPEEPIYAQVAKKV  KID+LNQ ASG+GGVGQ AGFPLKRHDKV+DLS
Sbjct  911   KVNKKKAGQAASPEEPIYAQVAKKVNAKIDRLNQIASGLGGVGQAAGFPLKRHDKVDDLS  970

Query  959   KVGRSVSPEPIYATIDDLGGSFPLRRSAAVDDLSKVGRSREQELTQKIDNLSQAVSEAKA  1018
             KVG S + EPIYATIDDLGGSFPL+R   VDDLSKVG SR+QEL+QKIDNL+QAVSEAKA
Sbjct  971   KVGLSANHEPIYATIDDLGGSFPLKRHDKVDDLSKVGLSRNQELAQKIDNLNQAVSEAKA  1030

Query  1019  GFFGNLERTIDKLKDSTKNNPVNLWAENAKKVPASLSAKLDNYATNSHTRINSNIQNGAI  1078
             GFFGNLE+TID+LKDSTK N+VNLWAE+AKKVPASLSAKLDNYA NSHTRINSN++NGAI
Sbjct  1031  GFFGNLEQTIDNLKDSTKYNSVNLWAESAKKVPASLSAKLDNYAINSHTRINSNVKNGAI  1090

Query  1079  NEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFSTKLN  1138
             NEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFSTKLN
Sbjct  1091  NEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFSTKLN  1150

Query  1139  NTVKDVKSGFTQFLANAFSTG--YYSLARENAEHGIKNANTKGGFQKS  1184
             N+VKD KSGFT+FLANAFST+  YY LA ENAEHGIKN NTKGGFQKS
Sbjct  1151  NAVKDTKSGFTRFLANAFSTASYYYFLAGENAEHGIKNVNTKGGFQKS  1198

15) hp2018_0531 in NC_017381


> AY330637|20|G20|37811806|AAR03881.1|Helicobacter_pylori_Ca52|+|21859..25455|cagA|HP0547|CagA
Length=1198

 Score = 1612 bits (6120),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1058/1188 (90%), Positives = 1130/1188 (96%), Gaps = 10/1188 (0%)

Query  1     MTNETIDQQPQTEAAFNPQQFINNLQVAFLKVDNAIASFDPDQKPIVDKNDRDNRQAFDG  60
             MTNETI+QQPQTEAAFNPQQFINNLQVAFLKVDNA+AS+DPDQKPIVDKNDRDNRQAF+G
Sbjct  17    MTNETINQQPQTEAAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNRQAFEG  76

Query  61    ISQLREEYSNKAIKNPTKKNQYFSDFINKSNDLINKDNLIDVESSTKSFQKFGDQRYRIF  120
             ISQLREEYSNKAIKNPTKKNQYFSDFI+KSNDLINKDNL+DVESSTKSFQKFGDQRY+IF
Sbjct  77    ISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNLVDVESSTKSFQKFGDQRYQIF  136

Query  121   TSWVSHQNDPSKINTRSIRNFMEHAIQPPIPDDKEKAEFLKSAKQSFAGIIIGNQIRTDQ  180
             TSWVSHQNDPSKINTRSIRNFME+ IQPPIPDDKEKAEFLKSAKQ+FAGIIIGNQIRTDQ
Sbjct  137   TSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQAFAGIIIGNQIRTDQ  196

Query  181   KFMGVFDESLKERQEAEKNGGSTGGDWLDIFLSFIFDKKQSSDVKEAINQEPVPHVQPDI  240
             KFMGVFDESLKERQEAEKNGG+TGGDWLDIFLSF+F+KKQSSD+KE+++QEPVPHVQPDI
Sbjct  197   KFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSFVFNKKQSSDLKETLDQEPVPHVQPDI  256

Query  241   ATSTTHIQGLPPESRDLLDERGNFSKFTLGDMEMLDVEGVADMDPNYKFNQLLIHNNALS  300
             AT+TT+IQGLPPE+RDLLDERGNFSKFTLGDMEMLDVEGVAD+DPNYKFNQLLIHNNALS
Sbjct  257   ATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALS  316

Query  301   SVLMGSHDGIEPEKVSLLYAGNGGFGDKHDWNATVGYKDQQGNNVATIINVHMKNGSGLI  360
             SVLMGSH+GIEPEKVSLLY+GNGGFG KHDWNATVGYKDQQGNNVATIINVHMKNGSGL+
Sbjct  317   SVLMGSHNGIEPEKVSLLYGGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKNGSGLV  376

Query  361   IAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKIDFMEFLAQNNAkldslsekekek  420
             IAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKI+FMEFLAQNNAKLD+LSEKEKEK
Sbjct  377   IAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKINFMEFLAQNNAKLDNLSEKEKEK  436

Query  421   fkneikdfQKDSKPYLDALGNDRIAFVSKKDPKHSALITEFNKGDLSYTLKDYGKKADKA  480
             F+ EI DFQKDSK+YLDALGNDRIAFVSKKD KHSALITEF +GDLSYTLKDYGKKADKA
Sbjct  437   FRTEIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGKKADKA  496

Query  481   LDREKNVTLQGNLKHDGVMFVNYSNFKYTNASKSPNKGVGVTNGVSHLEAGFSKVAVFNL  540
             LDREKNVTLQG+LKHDGVMFV+YSNFKYTNASK+PNKGVGVTNGVSHLEAGF KVAVFNL
Sbjct  497   LDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFDKVAVFNL  556

Query  541   PNLNNLAITSVVRRDLEDKLIAKGLSPQEANKLVKDFLSSNKELVGKALNFNKAVAEAKN  600
             P+LNNLAITS VRR+LEDKL +KGLS QEANKL+KDFL+SNKELVGKALNFNKAVAEAKN
Sbjct  557   PDLNNLAITSFVRRNLEDKLATKGLSLQEANKLIKDFLNSNKELVGKALNFNKAVAEAKN  616

Query  601   TGNYDEVKRAQKDLEKSLKKREHLEKDVAKNLESKSGNKNKMEVKSQANSQKDEIFALIN  660
             TGNYDEVK+AQKDLEKSLKKREHLEK+VAK+LESKSGNKNKME KSQANSQKDEIFALIN
Sbjct  617   TGNYDEVKKAQKDLEKSLKKREHLEKEVAKKLESKSGNKNKMEAKSQANSQKDEIFALIN  676

Query  661   KEANRDARAIAYAQNLKDIKRELSDKLENISKDLKDFSKSFDEFKNGKSKDFSKVEETLK  720
             KEANRDARAIAYAQNLK+IKRELSDKLENI+KDLKDFSKSFDEFKNGK+KDFSK EETLK
Sbjct  677   KEANRDARAIAYAQNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKAEETLK  736

Query  721   ALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSIKDVIINQKI  780
             ALKGSVKDLGINPEWISKVENLN+ALNEFKNGKNKDFSKVTQAKSDLENSIKDVIINQKI
Sbjct  737   ALKGSVKDLGINPEWISKVENLNTALNEFKNGKNKDFSKVTQAKSDLENSIKDVIINQKI  796

Query  781   TDKVDNLNQAVSMAKIAGNFSGVEQALADLKNFSKEQLAQQAQKNESFNVGK-SEIYQSv  839
             TDKVDNLNQAVS+AK +G+FSGVEQALADLKNFSK QLAQQAQKNE FN GK SEIYQSV
Sbjct  797   TDKVDNLNQAVSIAKATGDFSGVEQALADLKNFSKGQLAQQAQKNEDFNTGKNSEIYQSV  856

Query  840   kngvngtlvgnglsgIEATALAKNFSDIkkelnekfknfnnnnnglkngkDKGPEEPIYA  899
             KNGVNGTLVGNGLS  EAT+L+KNFSDI      K     +  N  +N ++   +EPIYA
Sbjct  857   KNGVNGTLVGNGLSKAEATTLSKNFSDI------KKELEAKLGNFNNNNNNGLKNEPIYA  910

Query  900   QVNKKKTGQVASPEEPIYAQVAKKVTQKIDQLNQAASGFGGVGQ-AGFPLKRHDKVEDLS  958
             +VNKKK+GQ ASPEEPIYAQVAKKV  KID+LNQ ASG+GGVGQ AGFPLKRHDKV+DLS
Sbjct  911   KVNKKKAGQAASPEEPIYAQVAKKVNAKIDRLNQIASGLGGVGQAAGFPLKRHDKVDDLS  970

Query  959   KVGRSVSPEPIYATIDDLGGSFPLRRSAAVDDLSKVGRSREQELTQKIDNLSQAVSEAKA  1018
             KVG S + EPIYATIDDLGGSFPL+R   VDDLSKVG SR+QEL+QKIDNL+QAVSEAKA
Sbjct  971   KVGLSANHEPIYATIDDLGGSFPLKRHDKVDDLSKVGLSRNQELAQKIDNLNQAVSEAKA  1030

Query  1019  GFFGNLERTIDKLKDSTKNNPVNLWAENAKKVPASLSAKLDNYATNSHTRINSNIQNGAI  1078
             GFFGNLE+TID+LKDSTK N+VNLWAE+AKKVPASLSAKLDNYA NSHTRINSN++NGAI
Sbjct  1031  GFFGNLEQTIDNLKDSTKYNSVNLWAESAKKVPASLSAKLDNYAINSHTRINSNVKNGAI  1090

Query  1079  NEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFSTKLN  1138
             NEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFSTKLN
Sbjct  1091  NEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFSTKLN  1150

Query  1139  NTVKDVKSGFTQFLANAFSTG--YYSLARENAEHGIKNANTKGGFQKS  1184
             N+VKD KSGFT+FLANAFST+  YY LA ENAEHGIKN NTKGGFQKS
Sbjct  1151  NAVKDTKSGFTRFLANAFSTASYYYFLAGENAEHGIKNVNTKGGFQKS  1198

16) cagA in NC_017357


> AY330637|20|G20|37811806|AAR03881.1|Helicobacter_pylori_Ca52|+|21859..25455|cagA|HP0547|CagA
Length=1198

 Score = 1612 bits (6119),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1058/1188 (90%), Positives = 1130/1188 (96%), Gaps = 10/1188 (0%)

Query  1     MTNETIDQQPQTEAAFNPQQFINNLQVAFLKVDNAIASFDPDQKPIVDKNDRDNRQAFDG  60
             MTNETI+QQPQTEAAFNPQQFINNLQVAFLKVDNA+AS+DPDQKPIVDKNDRDNRQAF+G
Sbjct  17    MTNETINQQPQTEAAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNRQAFEG  76

Query  61    ISQLREEYSNKAIKNPTKKNQYFSDFINKSSDLINKDNLIDVESSTKSFQKFGDQRYRIF  120
             ISQLREEYSNKAIKNPTKKNQYFSDFI+KS+DLINKDNL+DVESSTKSFQKFGDQRY+IF
Sbjct  77    ISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNLVDVESSTKSFQKFGDQRYQIF  136

Query  121   TSWVSHQNDPSKINTRSIRNFMEHAIQPPIPDDKEKAEFLKSAKQSFAGIIIGNQIRTDQ  180
             TSWVSHQNDPSKINTRSIRNFME+ IQPPIPDDKEKAEFLKSAKQ+FAGIIIGNQIRTDQ
Sbjct  137   TSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQAFAGIIIGNQIRTDQ  196

Query  181   KFMGVFDESLKERQEAEKNGGSTGGDWLDIFLSFIFDKKQSSDVKEAINQEPVPHVQPDI  240
             KFMGVFDESLKERQEAEKNGG+TGGDWLDIFLSF+F+KKQSSD+KE+++QEPVPHVQPDI
Sbjct  197   KFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSFVFNKKQSSDLKETLDQEPVPHVQPDI  256

Query  241   ATSTTHIQGLPPESRDLLDERGNFSKFTLGDMEMLDVEGVADMDPNYKFNQLLIHNNALS  300
             AT+TT+IQGLPPE+RDLLDERGNFSKFTLGDMEMLDVEGVAD+DPNYKFNQLLIHNNALS
Sbjct  257   ATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALS  316

Query  301   SVLMGSHDGIEPEKVSLLYAGNGGFGDKHDWNATVGYKDQQGNNVATIINVHMKNGSGLI  360
             SVLMGSH+GIEPEKVSLLY+GNGGFG KHDWNATVGYKDQQGNNVATIINVHMKNGSGL+
Sbjct  317   SVLMGSHNGIEPEKVSLLYGGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKNGSGLV  376

Query  361   IAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKIDFMEFLAQNNAkldslsekekek  420
             IAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKI+FMEFLAQNNAKLD+LSEKEKEK
Sbjct  377   IAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKINFMEFLAQNNAKLDNLSEKEKEK  436

Query  421   fkneikdfQKDSKPYLDALGNDRIAFVSKKDPKHSALITEFNKGDLSYTLKDYGKKADKA  480
             F+ EI DFQKDSK+YLDALGNDRIAFVSKKD KHSALITEF +GDLSYTLKDYGKKADKA
Sbjct  437   FRTEIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGKKADKA  496

Query  481   LDREKNVTLQGNLKHDGVMFVNYSNFKYTNASKSPNKGVGVTNGVSHLEAGFSKVAVFNL  540
             LDREKNVTLQG+LKHDGVMFV+YSNFKYTNASK+PNKGVGVTNGVSHLEAGF KVAVFNL
Sbjct  497   LDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFDKVAVFNL  556

Query  541   PNLNNLAITSVVRRDLEDKLIAKGLSPQEANKLVKDFLSSNKELVGKALNFNKAVAEAKN  600
             P+LNNLAITS VRR+LEDKL +KGLS QEANKL+KDFL+SNKELVGKALNFNKAVAEAKN
Sbjct  557   PDLNNLAITSFVRRNLEDKLATKGLSLQEANKLIKDFLNSNKELVGKALNFNKAVAEAKN  616

Query  601   TGNYDEVKRAQKDLEKSLKKREHLEKDVAKNLESKSGNKNKMEVKSQANSQKDEIFALIN  660
             TGNYDEVK+AQKDLEKSLKKREHLEK+VAK+LESKSGNKNKME KSQANSQKDEIFALIN
Sbjct  617   TGNYDEVKKAQKDLEKSLKKREHLEKEVAKKLESKSGNKNKMEAKSQANSQKDEIFALIN  676

Query  661   KEANRDARAIAYAQNLKDIKRELSDKLENISKDLKDFSKSFDEFKNGKSKDFSKVEETLK  720
             KEANRDARAIAYAQNLK+IKRELSDKLENI+KDLKDFSKSFDEFKNGK+KDFSK EETLK
Sbjct  677   KEANRDARAIAYAQNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKAEETLK  736

Query  721   ALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSIKDVIINQKI  780
             ALKGSVKDLGINPEWISKVENLN+ALNEFKNGKNKDFSKVTQAKSDLENSIKDVIINQKI
Sbjct  737   ALKGSVKDLGINPEWISKVENLNTALNEFKNGKNKDFSKVTQAKSDLENSIKDVIINQKI  796

Query  781   TDKVDNLNQAVSMAKIAGNFSGVEQALADLKNFSKEQLAQQAQKNESFNVGK-SEIYQSv  839
             TDKVDNLNQAVS+AK +G+FSGVEQALADLKNFSK QLAQQAQKNE FN GK SEIYQSV
Sbjct  797   TDKVDNLNQAVSIAKATGDFSGVEQALADLKNFSKGQLAQQAQKNEDFNTGKNSEIYQSV  856

Query  840   kngvngtlvgnglsgIEATALAKNFSDIkkelnekfknfnnnnnglkngkDKGPEEPIYA  899
             KNGVNGTLVGNGLS  EAT+L+KNFSDI      K     +  N  +N ++   +EPIYA
Sbjct  857   KNGVNGTLVGNGLSKAEATTLSKNFSDI------KKELEAKLGNFNNNNNNGLKNEPIYA  910

Query  900   QVNKKKTGQVASPEEPIYAQVAKKVTQKIDQLNQAASGFGGVGQ-AGFPLKRHDKVEDLS  958
             +VNKKK+GQ ASPEEPIYAQVAKKV  KID+LNQ ASG+GGVGQ AGFPLKRHDKV+DLS
Sbjct  911   KVNKKKAGQAASPEEPIYAQVAKKVNAKIDRLNQIASGLGGVGQAAGFPLKRHDKVDDLS  970

Query  959   KVGRSVSPEPIYATIDDLGGSFPLRRSAAVDDLSKVGRSREQELTQKIDNLSQAVSEAKA  1018
             KVG S + EPIYATIDDLGGSFPL+R   VDDLSKVG SR+QEL+QKIDNL+QAVSEAKA
Sbjct  971   KVGLSANHEPIYATIDDLGGSFPLKRHDKVDDLSKVGLSRNQELAQKIDNLNQAVSEAKA  1030

Query  1019  GFFGNLERTIDKLKDSTKNNPVNLWAENAKKVPASLSAKLDNYATNSHTRINSNIQNGAI  1078
             GFFGNLE+TID+LKDSTK N+VNLWAE+AKKVPASLSAKLDNYA NSHTRINSN++NGAI
Sbjct  1031  GFFGNLEQTIDNLKDSTKYNSVNLWAESAKKVPASLSAKLDNYAINSHTRINSNVKNGAI  1090

Query  1079  NEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFSTKLN  1138
             NEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFSTKLN
Sbjct  1091  NEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFSTKLN  1150

Query  1139  NAVKDVKSGFTQFLANAFSTG--YYSLARENAEHGIKNANTKGGFQKS  1184
             NAVKD KSGFT+FLANAFST+  YY LA ENAEHGIKN NTKGGFQKS
Sbjct  1151  NAVKDTKSGFTRFLANAFSTASYYYFLAGENAEHGIKNVNTKGGFQKS  1198

17) HPGAM_02795 in NC_017371


> AY330637|20|G20|37811806|AAR03881.1|Helicobacter_pylori_Ca52|+|21859..25455|cagA|HP0547|CagA
Length=1198

 Score = 1575 bits (5979),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1068/1232 (87%), Positives = 1135/1232 (93%), Gaps = 54/1232 (4%)

Query  1     MTNETIDQQPQTEAAFNPQQFINNLQVAFLKIDNAVASYDPDQKPIVDKNDRDNRQAFEG  60
             MTNETI+QQPQTEAAFNPQQFINNLQVAFLK+DNAVASYDPDQKPIVDKNDRDNRQAFEG
Sbjct  17    MTNETINQQPQTEAAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNRQAFEG  76

Query  61    ISQLREEYSNKAIKNPTKKNQYFSDFINKSNDLINKDNLIDVESSTESFRKFGDQRYRIF  120
             ISQLREEYSNKAIKNPTKKNQYFSDFI+KSNDLINKDNL+DVESST SF+KFGDQRY+IF
Sbjct  77    ISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNLVDVESSTKSFQKFGDQRYQIF  136

Query  121   TSWVSHQNDPSKINTRSIRNFMERTIQPPIPDDKEKAEFLKSAKQSFAGIIIGNQIRTDQ  180
             TSWVSHQNDPSKINTRSIRNFME  IQPPIPDDKEKAEFLKSAKQ+FAGIIIGNQIRTDQ
Sbjct  137   TSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQAFAGIIIGNQIRTDQ  196

Query  181   KFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSFIFDKKQSSDVKEAINQEPVPNVQPDI  240
             KFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSF+F+KKQSSD+KE+++QEPVP+VQPDI
Sbjct  197   KFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSFVFNKKQSSDLKETLDQEPVPHVQPDI  256

Query  241   ATTTIHIQGLPPESRDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALS  300
             ATTT +IQGLPPE+RDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALS
Sbjct  257   ATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALS  316

Query  301   SVLMGSHNGIEPEKVSLLYAGNGGFGDKHDWNATVGYKDQQGNNVATMINVHMKNGSGLV  360
             SVLMGSHNGIEPEKVSLLY+GNGGFG KHDWNATVGYKDQQGNNVAT+INVHMKNGSGLV
Sbjct  317   SVLMGSHNGIEPEKVSLLYGGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKNGSGLV  376

Query  361   IAGGEKGINNPSFYLYKEDQRTGSQRALSQEEILNKIDFMEFLAQNNAKLDNLSEKEKEK  420
             IAGGEKGINNPSFYLYKEDQ TGSQRALSQEEI NKI+FMEFLAQNNAKLDNLSEKEKEK
Sbjct  377   IAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKINFMEFLAQNNAKLDNLSEKEKEK  436

Query  421   FQNEIKDFQKDSKPYLGALGNDRIAFVSKKDPKHSALITEFNKGDLSYTLKDYGKKADKA  480
             F+ EI DFQKDSK+YL+ALGNDRIAFVSKKD KHSALITEF +GDLSYTLKDYGKKADKA
Sbjct  437   FRTEIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGKKADKA  496

Query  481   LDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFSKVAVFNL  540
             LDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGF KVAVFNL
Sbjct  497   LDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFDKVAVFNL  556

Query  541   PNLNNLAITSVVRRDLEDKLIAKGLSPQEANKLVKDFLSSNKELVGKALNFNKAVADAKN  600
             P+LNNLAITS VRR+LEDKL +KGLS QEANKL+KDFL+SNKELVGKALNFNKAVA+AKN
Sbjct  557   PDLNNLAITSFVRRNLEDKLATKGLSLQEANKLIKDFLNSNKELVGKALNFNKAVAEAKN  616

Query  601   TGNYDEVKQAQkdlekslkkrerlekdVAKNLESKSGNKNKMEAKSQANSQKDEIFALIN  660
             TGNYDEVK+AQKDLEKSLKKRE+LEK+VAK+LESKSGNKNKMEAKSQANSQKDEIFALIN
Sbjct  617   TGNYDEVKKAQKDLEKSLKKREHLEKEVAKKLESKSGNKNKMEAKSQANSQKDEIFALIN  676

Query  661   KEANRDARAIAYAQNLKGIKRELSDKLEKINKDLKDFSKSFDEFKNGKNKDFSKAEETLK  720
             KEANRDARAIAYAQNLKGIKRELSDKLE+INKDLKDFSKSFDEFKNGKNKDFSKAEETLK
Sbjct  677   KEANRDARAIAYAQNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKAEETLK  736

Query  721   ALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLEGSIKDVIINQKI  780
             ALKGSVKDLGINPEWISKVENLN+ALNEFKNGKNKDFSKVTQAKSDLE SIKDVIINQKI
Sbjct  737   ALKGSVKDLGINPEWISKVENLNTALNEFKNGKNKDFSKVTQAKSDLENSIKDVIINQKI  796

Query  781   TDKVDNLNQAVSVAKIAGDFSGVEQALADLKNFSKEQLAQQAQKNESFNVGK-SEIYQSv  839
             TDKVDNLNQAVS+AK +GDFSGVEQALADLKNFSK QLAQQAQKNE FN GK SEIYQSV
Sbjct  797   TDKVDNLNQAVSIAKATGDFSGVEQALADLKNFSKGQLAQQAQKNEDFNTGKNSEIYQSV  856

Query  840   kngvngtlvgnglsgMEATALAKNFSDIkkelnekfknfnnnnnglkngkDKGPEEPIYA  899
             KNGVNGTLVGNGLS  EAT+L+KNFSDIKKEL+ K+ NFNNNNN      +   +EPIYA
Sbjct  857   KNGVNGTLVGNGLSKAEATTLSKNFSDIKKELEAKLGNFNNNNN------NGLKNEPIYA  910

Query  900   QVNKKKTGQVASPEEPIYAQVAKKVTKKIDQLNQAASGFGGVGQAGFPLKRHDKVEDLSK  959
             +VNKKK+GQ ASPEEPIYAQVAKKV                          + K++ L++
Sbjct  911   KVNKKKAGQAASPEEPIYAQVAKKV--------------------------NAKIDRLNQ  944

Query  960   VGGVGQAGFPLKRHDKVEDLSKVGGVGQA-GFPLKRHDKVDDLSKVGRSVSPEPIYATID  1018
             ++                  S +GGVGQA GFPLKRHDKVDDLSKVG S + EPIYATID
Sbjct  945   IA------------------SGLGGVGQAAGFPLKRHDKVDDLSKVGLSANHEPIYATID  986

Query  1019  DLGGSFPLKRSTKVEDLSKVGLSRNQELTQKIDNLSQAVSEAKAGFFGNLEQTIDKLKDS  1078
             DLGGSFPLKR  KV+DLSKVGLSRNQEL+QKIDNL+QAVSEAKAGFFGNLEQTID+LKDS
Sbjct  987   DLGGSFPLKRHDKVDDLSKVGLSRNQELAQKIDNLNQAVSEAKAGFFGNLEQTIDNLKDS  1046

Query  1079  TKNNPMNLWAESAKKVPASLSAKLDNYATNSHTRINSNIQNGAINEKATGMLTQKNPEWL  1138
             TK N++NLWAESAKKVPASLSAKLDNYA NSHTRINSN++NGAINEKATGMLTQKNPEWL
Sbjct  1047  TKYNSVNLWAESAKKVPASLSAKLDNYAINSHTRINSNVKNGAINEKATGMLTQKNPEWL  1106

Query  1139  KLVNDKIVAHNVGSAPLSEYDNIGFSQKNMKDYSDSFKFSTKLNNAVKDIKSGFTQFLAN  1198
             KLVNDKIVAHNVGS PLSEYD+IGF+QKNMKDYSDSFKFSTKLNNAVKD KSGFT+FLAN
Sbjct  1107  KLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDTKSGFTRFLAN  1166

Query  1199  AFSTG--YYSMARENAEHGIKNANTKGGFQKS  1228
             AFST+  YY +A ENAEHGIKN NTKGGFQKS
Sbjct  1167  AFSTASYYYFLAGENAEHGIKNVNTKGGFQKS  1198

18) cagA in NC_000921


> AY330637|20|G20|37811806|AAR03881.1|Helicobacter_pylori_Ca52|+|21859..25455|cagA|HP0547|CagA
Length=1198

 Score = 1561 bits (5927),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1032/1186 (88%), Positives = 1108/1186 (94%), Gaps = 23/1186 (1%)

Query  1     MTNEAINQQPQTEAAFNPQQFINNLQVAFIKVDNVVASFDPNQKPIVDKNDRDNRQAFEK  60
             MTNE+INQQPQTEAAFNPQQFINNLQVAF+KVDN VAS+DP+QKPIVDKNDRDNRQAFE 
Sbjct  17    MTNETINQQPQTEAAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNRQAFEG  76

Query  61    ISQLREEFANKAIKNPTKKNQYFSSFISKSNDLIDKDNLIDTGSSIKSFQKFGTQRYQIF  120
             ISQLREE++NKAIKNPTKKNQYFS FI KSNDLI+KDNL+D  SS KSFQKFG QRYQIF
Sbjct  77    ISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNLVDVESSTKSFQKFGDQRYQIF  136

Query  121   MNWVSHQNDPSKINTQKIRGFMENIIQPPISDDKEKAEFLRSAKQAFAGIIIGNQIRSDQ  180
              +WVSHQNDPSKINT+ IR FMENIIQPPI+DDKEKAEFL+SAKQAFAGIIIGNQIR+DQ
Sbjct  137   TSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQAFAGIIIGNQIRTDQ  196

Query  181   KFMGVFDESLKERQEAEKNGEPNGDPTGGDWLDIFLSFVFNKKQSSDLKETLNQEPVPHV  240
             KFMGVFDESLKERQEAEKNG    +PTGGDWLDIFLSFVFNKKQSSDLKETL+QEPVPHV
Sbjct  197   KFMGVFDESLKERQEAEKNG----GPTGGDWLDIFLSFVFNKKQSSDLKETLDQEPVPHV  252

Query  241   QPDVATTTTDIQSLPPEARDLLDERGNFSKFTLGDMNMLDVEGVADIDPNYKFNQLLIHN  300
             QPD+ATTTTDIQ+LPPEARDLLDERGNFSKFTLGDM+MLDVEGVADIDPNYKFNQLLIHN
Sbjct  253   QPDIATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHN  312

Query  301   NALSSVLMGSHNGIEPEKVSLLYGNNGGPEARHDWNATVGYKNQRGDNVATLINVHMKNG  360
             NALSSVLMGSHNGIEPEKVSLLYG NGG  A+HDWNATVGYK+Q+G+NVAT+INVHMKNG
Sbjct  313   NALSSVLMGSHNGIEPEKVSLLYGGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKNG  372

Query  361   SGLVIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKVDFMEFLAQNNAKLDNLSKK  420
             SGLVIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNK++FMEFLAQNNAKLDNLS K
Sbjct  373   SGLVIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKINFMEFLAQNNAKLDNLSEK  432

Query  421   EKEKFQNEIEDFQKDSKAYLDALGNDHIAFVSKKDKKHLALVAEFGNGELSYTLKDYGKK  480
             EKEKF+ EIEDFQKDSKAYLDALGND+IAFVSKKD KH AL++EFGNG+LSYTLKDYGKK
Sbjct  433   EKEKFRTEIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGKK  492

Query  481   ADKALDREAKTTLQGSLKHDGVMFVDYSNFKYTNASKSPDKGVGATNGVSHLEAGFSKVA  540
             ADKALDRE + TLQGSLKHDGVMFVDYSNFKYTNASK+P+KGVG TNGVSHLEAGF KVA
Sbjct  493   ADKALDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFDKVA  552

Query  541   VFNLPNLNNLAITSVVRQDLEDKLIAKGLSPQEANKLVKDFLSSNKELVGKALNFNKAVA  600
             VFNLP+LNNLAITS VR++LEDKL +KGLS QEANKL+KDFL+SNKELVGKALNFNKAVA
Sbjct  553   VFNLPDLNNLAITSFVRRNLEDKLATKGLSLQEANKLIKDFLNSNKELVGKALNFNKAVA  612

Query  601   EAKNTGNYDEVKQAQkdlekslkkrerlekdVAKNLESKSGNKNKMEAKSQANSQKDEIF  660
             EAKNTGNYDEVK+AQKDLEKSLKKRE+LEK+VAK+LESKSGNKNKMEAKSQANSQKDEIF
Sbjct  613   EAKNTGNYDEVKKAQKDLEKSLKKREHLEKEVAKKLESKSGNKNKMEAKSQANSQKDEIF  672

Query  661   ALINKEANRDARAIAYAQNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKAE  720
             ALINKEANRDARAIAYAQNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKAE
Sbjct  673   ALINKEANRDARAIAYAQNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKAE  732

Query  721   ETLKALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSIKDVII  780
             ETLKALKGSVKDLGINPEWISKVENLN+ALNEFKNGKNKDFSKVTQAKSDLENSIKDVII
Sbjct  733   ETLKALKGSVKDLGINPEWISKVENLNTALNEFKNGKNKDFSKVTQAKSDLENSIKDVII  792

Query  781   NQKITDKVDNLNQAVSVAKATGDFSGVEQALADLKNFSKEQLAQQAQKNEDFNTGKNSAL  840
             NQKITDKVDNLNQAVS+AKATGDFSGVEQALADLKNFSK QLAQQAQKNEDFNTGKNS +
Sbjct  793   NQKITDKVDNLNQAVSIAKATGDFSGVEQALADLKNFSKGQLAQQAQKNEDFNTGKNSEI  852

Query  841   YQSVKngvngtlvgnglSKAEATTLSKNFSDIKKelnakl-----------------gnf  883
             YQSVKNGVNGTLVGNGLSKAEATTLSKNFSDIKKEL+AKL                 ++ 
Sbjct  853   YQSVKNGVNGTLVGNGLSKAEATTLSKNFSDIKKELEAKLGNFNNNNNNGLKNEPIYAKV  912

Query  884   nnnnnnglenSTEPIYTQVAKKVKAKIDRLDQIASGLGDVGQAASFLLKRHDKVDDLSKV  943
             N+++     ++ EPIY+QVAKKV+AKIDRL+QIASGLG+VGQAA+F LKRHDKVDDLSKV
Sbjct  913   NKKKAGQAASPEEPIYAQVAKKVNAKIDRLNQIASGLGGVGQAAGFPLKRHDKVDDLSKV  972

Query  944   GLSANHEPIYATIDDLGGPFPLKRHDKVDDLSKVGLSREQKLTQKIDNLNQAVSEAKASH  1003
             GLSANHEPIYATIDDLGG+FPLKRHDKVDDLSKVGLSR+Q L+QKIDNLNQAVSEAKA+ 
Sbjct  973   GLSANHEPIYATIDDLGGSFPLKRHDKVDDLSKVGLSRNQELAQKIDNLNQAVSEAKAGF  1032

Query  1004  FDNLDQMIDKLKDSTKKNVVNLYVESAKKVPTSLSAKLDNYATNSHTRINSNVKNGTINE  1063
             F+NL+Q ID+LKDSTK N VNL  ESAKKVP+SLSAKLDNYA NSHTRINSNVKNG+INE
Sbjct  1033  FGNLEQTIDNLKDSTKYNSVNLWAESAKKVPASLSAKLDNYAINSHTRINSNVKNGAINE  1092

Query  1064  KATGMLTQKNSEWLKLVNDKIVAHNVGSAPLSAYDKIGFNQKNMKDYSDSFKFSTRLSNA  1123
             KATGMLTQKN+EWLKLVNDKIVAHNVGS PLS YDKIGFNQKNMKDYSDSFKFST+L+NA
Sbjct  1093  KATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFSTKLNNA  1152

Query  1124  VKDIKSGFVQFLTNIFSMGSYS--LMKASVEHGVKNTNTKGGFQKS  1167
             VKD KSGF +FL+N FS +SY   L   + EHG+KN NTKGGFQKS
Sbjct  1153  VKDTKSGFTRFLANAFSTASYYYFLAGENAEHGIKNVNTKGGFQKS  1198

19) HPLT_02705 in NC_017362


> AY330637|20|G20|37811806|AAR03881.1|Helicobacter_pylori_Ca52|+|21859..25455|cagA|HP0547|CagA
Length=1198

 Score = 1554 bits (5900),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1017/1182 (87%), Positives = 1109/1182 (94%), Gaps = 2/1182 (0%)

Query  1     MTNETINQQPQTEAAFNPQQFINNLQVAFLKVDNVVSSFDPDQKPIVDKNDRDNRQAFEK  60
             MTNETINQQPQTEAAFNPQQFINNLQVAFLKVDN V+S+DPDQKPIVDKNDRDNRQAFE 
Sbjct  17    MTNETINQQPQTEAAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNRQAFEG  76

Query  61    ISQLMEEFankaiknpakknQYFSSFISKSNDLIDKGSLIDTGSSVKSFQKFGTQRYQIF  120
             ISQL EE++NKAIKNP+KKNQYFS FI KSNDLI+K++L+D  SS KSFQKFG QRYQIF
Sbjct  77    ISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNLVDVESSTKSFQKFGDQRYQIF  136

Query  121   MNWVSHQKDPSKINTQEIRGFMENIIQPPISDDKEKAEFLRSAKQAFAGIIIGNQIRSDQ  180
              +WVSHQ+DPSKINT+ IR FMENIIQPPI+DDKEKAEFL+SAKQAFAGIIIGNQIR+DQ
Sbjct  137   TSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQAFAGIIIGNQIRTDQ  196

Query  181   KFMGVFDESLKERQEAEKNGEPNGGDWFDIFLSFVFGKKQYSDLKETLNQEPMSNVEQNI  240
             KFMGVFDESLKERQEAEKNG P GGDW+DIFLSFVF KKQ SDLKETL+QEP+++V+ +I
Sbjct  197   KFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSFVFNKKQSSDLKETLDQEPVPHVQPDI  256

Query  241   ATTTTDIQGLPPESRDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLVIHNNALS  300
             ATTTTDIQGLPPE+RDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQL+IHNNALS
Sbjct  257   ATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALS  316

Query  301   SVLMGSHNGIEPEKVSLLYGGNGGPEARHDWNATVGYKNQQGDNVATLINVHMKNGSGLV  360
             SVLMGSHNGIEPEKVSLLYGGNGG  A+HDWNATVGYK+QQG+NVAT+INVHMKNGSGLV
Sbjct  317   SVLMGSHNGIEPEKVSLLYGGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKNGSGLV  376

Query  361   IAGGEKGVNNPSFYLYKEDQLTGSQRALSQKEIQNKVDFMEFLAQNNAKLDNLSKKEKEK  420
             IAGGEKG+NNPSFYLYKEDQLTGSQRALSQ EIQNK++FMEFLAQNNAKLDNLS KEKEK
Sbjct  377   IAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKINFMEFLAQNNAKLDNLSEKEKEK  436

Query  421   FQNEIEDFQKDSKAYLDALGNDHIAFVSKKDKKHLALVAEFGNGDLSYTLKDYGKKQDKA  480
             F+ EIEDFQKDSKAYLDALGND+IAFVSKKD KH AL++EFGNGDLSYTLKDYGKK DKA
Sbjct  437   FRTEIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGKKADKA  496

Query  481   LDREIKTTLQGNLKHDGVMFVNYSNFKYTNASKSPDKGVGATNGVSHLEANLSKVAVFNL  540
             LDRE + TLQG+LKHDGVMFV+YSNFKYTNASK+P+KGVG TNGVSHLEA + KVAVFNL
Sbjct  497   LDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFDKVAVFNL  556

Query  541   PNLNNLAITSYIRRDLEDKLWAKGLSPQEANKLIKDFLNSNKELVEKALNFNKTVAEAKN  600
             P+LNNLAITS++RR+LEDKL +KGLS QEANKLIKDFLNSNKELV KALNFNK+VAEAKN
Sbjct  557   PDLNNLAITSFVRRNLEDKLATKGLSLQEANKLIKDFLNSNKELVGKALNFNKAVAEAKN  616

Query  601   TGNYDEVKRTQKDLEKSIrkrehlekevvkkleNRNDNKNRMEAKAQANSQKDKIFAIIN  660
             TGNYDEVK++QKDLEKS++KREHLEKEV KKLE++++NKN+MEAK+QANSQKD IFA+IN
Sbjct  617   TGNYDEVKKAQKDLEKSLKKREHLEKEVAKKLESKSGNKNKMEAKSQANSQKDEIFALIN  676

Query  661   EEAGKEARAAACVQNLKGIRMELSDKLENINKNLKDFDKSFDEFKNGKNKDFSKTEETLK  720
              EA ++ARA A  QNLKGI+ ELSDKLENINK+LKDF KSFDEFKNGKNKDFSK+EETLK
Sbjct  677   KEANRDARAIAYAQNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKAEETLK  736

Query  721   ALKDSVKDLGINPEWISKVENLNTALNEFKNGKNKDFSKVTQAKSDLENSIKDVIINQKV  780
             ALK+SVKDLGINPEWISKVENLNTALNEFKNGKNKDFSKVTQAKSDLENSIKDVIINQK+
Sbjct  737   ALKGSVKDLGINPEWISKVENLNTALNEFKNGKNKDFSKVTQAKSDLENSIKDVIINQKI  796

Query  781   TDKVDNLNQAVSIAKETGDFSGVEQALADLKNFSKGQLAQQAQKNEDFNTGKNSELYQSV  840
             TDKVDNLNQAVSIAK TGDFSGVEQALADLKNFSKGQLAQQAQKNEDFNTGKNSE+YQSV
Sbjct  797   TDKVDNLNQAVSIAKATGDFSGVEQALADLKNFSKGQLAQQAQKNEDFNTGKNSEIYQSV  856

Query  841   KNGVNKTLVGNGLSGIEATALAKKFSDIkkelnekfknfnnnnnnglknEPIYAKVNKKK  900
             KNGVN TLVGNGLS  EAT+L+K+FSDIKKEL+ K+ NFNNNNNNGLKNEPIYAKVNKKK
Sbjct  857   KNGVNGTLVGNGLSKAEATTLSKNFSDIKKELEAKLGNFNNNNNNGLKNEPIYAKVNKKK  916

Query  901   IGEVASPEEPIYTQVAKKVNAKIDRLNQIASGLGDVGQATGFPLKRHTKVDDLSKVGLSA  960
              G+ ASPEEPIY+QVAKKVNAKIDRLNQIASGLG+VGQA+GFPLKRH KVDDLSKVGLSA
Sbjct  917   AGQAASPEEPIYAQVAKKVNAKIDRLNQIASGLGGVGQAAGFPLKRHDKVDDLSKVGLSA  976

Query  961   SPEPIYATIDDLGGPFPLKRHTKVDDLSKVGLSRNQELAQKIDNLNQAVLEAKTSHFDNL  1020
             + EPIYATIDDLGG+FPLKRH KVDDLSKVGLSRNQELAQKIDNLNQAV EAK++ F+NL
Sbjct  977   NHEPIYATIDDLGGSFPLKRHDKVDDLSKVGLSRNQELAQKIDNLNQAVSEAKAGFFGNL  1036

Query  1021  DQMIDKLKDSTKKNVMNLYVESAKKVPTSLSAKLDDYATNSHTRINSNVKNGTINEKATG  1080
             +Q ID+LKDSTK N +NL  ESAKKVP+SLSAKLD+YA NSHTRINSNVKNG+INEKATG
Sbjct  1037  EQTIDNLKDSTKYNSVNLWAESAKKVPASLSAKLDNYAINSHTRINSNVKNGAINEKATG  1096

Query  1081  MLTQKNPEWLKLVNDKIVAHNVGSAPLSAYDKIGFNQKNMKDYSDSFKFSTRLNNAVKDI  1140
             MLTQKNPEWLKLVNDKIVAHNVGS PLS YDKIGFNQKNMKDYSDSFKFST+LNNAVKD 
Sbjct  1097  MLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDT  1156

Query  1141  KSGFTQFLTNIFSTGSYS--LMKASVEHGVKNTNTKGGFQKS  1180
             KSGFT+FL+N FST+SY   L   + EHG+KN NTKGGFQKS
Sbjct  1157  KSGFTRFLANAFSTASYYYFLAGENAEHGIKNVNTKGGFQKS  1198

20) cagA in NC_020509


> AY330637|20|G20|37811806|AAR03881.1|Helicobacter_pylori_Ca52|+|21859..25455|cagA|HP0547|CagA
Length=1198

 Score = 1550 bits (5886),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1000/1203 (84%), Positives = 1094/1203 (91%), Gaps = 39/1203 (3%)

Query  17    FVPQRFINNLQVAFIKVDSAVASFDPDQKPIVDKNDRDNRQAFEKISQLREEYANKAIKN  76
             F PQ+FINNLQVAF+KVD+AVAS+DPDQKPIVDKNDRDNRQAFE ISQLREEY+NKAIKN
Sbjct  32    FNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNRQAFEGISQLREEYSNKAIKN  91

Query  77    PTKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQRYQIFTSWVSLQKDPSKINT  136
             PTKKNQYFSDFI+KSNDLINKDNL+ V+SS  SF+KFGDQRYQIFTSWVS Q+DPSKINT
Sbjct  92    PTKKNQYFSDFIDKSNDLINKDNLVDVESSTKSFQKFGDQRYQIFTSWVSHQNDPSKINT  151

Query  137   QKIRDFMENIIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSDQKFMGVFDESLKERQE  196
             + IR+FMENIIQPPI+DDKEKAEFL+SAKQ+FAGIIIGNQIR+DQKFMGVFDESLKERQE
Sbjct  152   RSIRNFMENIIQPPIPDDKEKAEFLKSAKQAFAGIIIGNQIRTDQKFMGVFDESLKERQE  211

Query  197   AEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLDQEPVPHVQPDIATTTTDIQGLPPESR  256
             AEKN+ P+GGDWLDIFLSFVFNKKQSSDLKETLDQEPVPHVQPDIATTTTDIQGLPPE+R
Sbjct  212   AEKNGGPTGGDWLDIFLSFVFNKKQSSDLKETLDQEPVPHVQPDIATTTTDIQGLPPEAR  271

Query  257   DLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALSSVLMGSHNGVEPEKV  316
             DLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALSSVLMGSHNG+EPEKV
Sbjct  272   DLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALSSVLMGSHNGIEPEKV  331

Query  317   SLLYGGNGGPEARHDWNATVGYKNQQGSNVATLINVHMKNGSGLVIAGGEKGVNNPSFYL  376
             SLLYGGNGG  A+HDWNATVGYK+QQG+NVAT+INVHMKNGSGLVIAGGEKG+NNPSFYL
Sbjct  332   SLLYGGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKNGSGLVIAGGEKGINNPSFYL  391

Query  377   YKEDQLTGLKQALSQKEIQNKVDFMEFLAKNNARLDNLSEKEKEKFQTEIEDFQKNPKAY  436
             YKEDQLTG ++ALSQ EIQNK++FMEFLA+NNA+LDNLSEKEKEKF+TEIEDFQK++KAY
Sbjct  392   YKEDQLTGSQRALSQEEIQNKINFMEFLAQNNAKLDNLSEKEKEKFRTEIEDFQKDSKAY  451

Query  437   LDALGNDHIAFVSKKDKKHLALVTEFGNGELSYTLKDYGKKQDKALDRETKTTLQGNLKH  496
             LDALGND+IAFVSKKD KH AL+TEFGNG+LSYTLKDYGKK DKALDRE + TLQG+LKH
Sbjct  452   LDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGKKADKALDREKNVTLQGSLKH  511

Query  497   DGVMFVNYSNFKYTNASKSPDKGVGATNGVSHLEANFSKVAVFNLPNLNNLAITSYMRRD  556
             DGVMFV+YSNFKYTNASK+P+KGVG TNGVSHLEA F KVAVFNLP+LNNLAITS++RR+
Sbjct  512   DGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFDKVAVFNLPDLNNLAITSFVRRN  571

Query  557   LEGKLSAKGLSLQEANKLIKDFLNSNKELVEKALNFNKTVAEAKNTGNYDEVKKAQKDLE  616
             LE+KL++KGLSLQEANKLIKDFLNSNKELV KALNFNK+VAEAKNTGNYDEVKKAQKDLE
Sbjct  572   LEDKLATKGLSLQEANKLIKDFLNSNKELVGKALNFNKAVAEAKNTGNYDEVKKAQKDLE  631

Query  617   KSIRKREHLEKEVTKKMENRNGNKNRMEAKAQANSQKDKIFAIINEEAGKEARGAACVQN  676
             KS++KREHLEKEV+KK+E+++GNKN+MEAK+QANSQKD IFA+IN EA ++AR+ A  QN
Sbjct  632   KSLKKREHLEKEVAKKLESKSGNKNKMEAKSQANSQKDEIFALINKEANRDARAIAYAQN  691

Query  677   LKSIRMELSDKLENINKNLKDLDKSFDEFKNGKNKDFSKTEETLKALKDSVKDLGINPEW  736
             LK+I+ ELSDKLENINK+LKD+ KSFDEFKNGKNKDFSK+EETLKALK+SVKDLGINPEW
Sbjct  692   LKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKAEETLKALKGSVKDLGINPEW  751

Query  737   ISKVENLNTALNEFKNGKNKDFSKVIQAKSDLENSIKDVIINQKITDKVDNLNQAVSIAK  796
             ISKVENLNTALNEFKNGKNKDFSKV QAKSDLENSIKDVIINQKITDKVDNLNQAVSIAK
Sbjct  752   ISKVENLNTALNEFKNGKNKDFSKVTQAKSDLENSIKDVIINQKITDKVDNLNQAVSIAK  811

Query  797   ATGDFSGVEQALADLKNFSKGQLTQQAQKNEDFNTGKNSELYQSVKngvngtlvgnglSK  856
             ATGDFSGVEQALADLKNFSKGQL+QQAQKNEDFNTGKNSE+YQSVKNGVNGTLVGNGLSK
Sbjct  812   ATGDFSGVEQALADLKNFSKGQLAQQAQKNEDFNTGKNSEIYQSVKNGVNGTLVGNGLSK  871

Query  857   AEATTLSKNFSDIKKElnaklgnfnnnnndglknSIEPIYAKVNKKKAGQAASPEESIYT  916
             AEATTLSKNFSDIKKE        N NNN+      EPIYAKVNKKKAGQAASPEE+IY+
Sbjct  872   AEATTLSKNFSDIKKE--LEAKLGNFNNNNNNGLKNEPIYAKVNKKKAGQAASPEEPIYA  929

Query  917   QVAKKVNAKIDQLNQAASGFGNVGQ-AGFPLKRHTKVDDLSKVGLSANHEPIYATIDDLG  975
             QVAKKVNAKID+LNQ ASG+G VGQ AGFPLKRH KVDDLSKVGLSANHEPIYATIDDLG
Sbjct  930   QVAKKVNAKIDRLNQIASGLGGVGQAAGFPLKRHDKVDDLSKVGLSANHEPIYATIDDLG  989

Query  976   GPFPLKRHTKVDDLSKVGLSANHEPIYATIDDLGGPFPLTRHTKVDDLSKVGLSREQELT  1035
             G+FPLKRH KVDDLSKVGL                                  SR+QEL+
Sbjct  990   GSFPLKRHDKVDDLSKVGL----------------------------------SRNQELA  1015

Query  1036  QKIDNLNQALSEAEACHFGNLEQMIDKLKDSTKKNVMNLYVESAKKVPTSLSAKLDNYAT  1095
             QKIDNLNQA+SEA A  FGNLEQ ID+LKDSTK N +NL  ESAKKVP+SLSAKLDNYA 
Sbjct  1016  QKIDNLNQAVSEAKAGFFGNLEQTIDNLKDSTKYNSVNLWAESAKKVPASLSAKLDNYAI  1075

Query  1096  NSHTRINSNVKNGTINEKETSMLMRKNPEWLKLVNDKIVAHNVGSAPLSAYDKIGFNQKN  1155
             NSHTRINSNVKNG+INEK T+ML +KNPEWLKLVNDKIVAHNVGS PLS YDKIGFNQKN
Sbjct  1076  NSHTRINSNVKNGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKN  1135

Query  1156  MKDYSDSFKFSTRLSNAVKDIKSDFVQFLTNIFSMGSYS--LMKASVEHGVKNTNTKGGF  1213
             MKDYSDSFKFST+L+NAVKD KS+F +FL+N FS +SY   L   + EHG+KN NTKGGF
Sbjct  1136  MKDYSDSFKFSTKLNNAVKDTKSGFTRFLANAFSTASYYYFLAGENAEHGIKNVNTKGGF  1195

Query  1214  QKS  1216
             QKS
Sbjct  1196  QKS  1198

21) HPPN135_02705 in NC_017379


> AY330637|20|G20|37811806|AAR03881.1|Helicobacter_pylori_Ca52|+|21859..25455|cagA|HP0547|CagA
Length=1198

 Score = 1522 bits (5779),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 955/1212 (79%), Positives = 1084/1212 (90%), Gaps = 40/1212 (3%)

Query  1     MANETINQTEKPDQTPSQTAFDPQQFINNLQVAFIKVDSAVASFDPDQKPIVDKNDRDNR  60
             M+NETINQ     Q  +++AF+PQQFINNLQVAF+KVD+AVAS+DPDQKPIVDKNDRDNR
Sbjct  17    MTNETINQ-----QPQTEAAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNR  71

Query  61    QAFNGISQLREEYANKAIKNPTKKNQYFSDFIDKSNDLINKDNLIDTDSSTKSFQKFGTQ  120
             QAF+GISQLREEY+NKAIKNPTKKNQYFSDFIDKSNDLINKDNL+D +SSTKSFQKFG Q
Sbjct  72    QAFEGISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNLVDVESSTKSFQKFGDQ  131

Query  121   RYQIFMNWVSHQKDPSKINTQKIRNFMENIIQPPISDDKEKAEFLRSAKQSFAGIIIGNQ  180
             RYQIF +WVSHQ+DPSKINT+ IRNFMENIIQPPI+DDKEKAEFL+SAKQ+FAGIIIGNQ
Sbjct  132   RYQIFTSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQAFAGIIIGNQ  191

Query  181   IRSDEKFMGVFDESLKERQEAEKNGEPASGDWLDIFLSFVFGKKQSSDFKETLNQEPRPN  240
             IR+D+KFMGVFDESLKERQEAEKNG P++GDWLDIFLSFVF KKQSSD+KETL+QEP P+
Sbjct  192   IRTDQKFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSFVFNKKQSSDLKETLDQEPVPH  251

Query  241   VEQNIAATTTPIQGLPLEARDLLDERGDFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIH  300
             V+ +IA+TTT IQGLP EARDLLDERG+FSKFTLGDMEMLDVEGVADIDPNYKFNQLLIH
Sbjct  252   VQPDIATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIH  311

Query  301   NNALSSMLMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLKN  360
             NNALSS+LMGSH+ IEPEKVSLLYG+NGG  A+HDWNATVGYK+QQGNNVAT+IN H+KN
Sbjct  312   NNALSSVLMGSHNGIEPEKVSLLYGGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKN  371

Query  361   GSGLVITGNENGINNPSFYLYKTDQLTGLKQALSQEEIQNKLGFMELLVQNNAKLDNLSE  420
             GSGLVI+G E+GINNPSFYLYK DQLTG ++ALSQEEIQNK+ FME+L QNNAKLDNLSE
Sbjct  372   GSGLVIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKINFMEFLAQNNAKLDNLSE  431

Query  421   EEKEKFQTEIGNFQKDPKAYLDSLGKDQIAFVSKKDQKHLALVTEFGNGELSYTLKDYGK  480
              EKEKF+TEI +FQKD+KAYLD+LG+D+IAFVSKKD KH AL+TEFGNG+LSYTLKDYGK
Sbjct  432   KEKEKFRTEIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGK  491

Query  481   TQDRALDRETKTTLQGNLKHDGVMFVNYSNFKYTNASKSPNEGIGATNGVSHLEANFSKV  540
               D+ALDRE + TLQG+LKHDGVMFV+YSNFKYTNASK+PN G+G TNGVSHLEA F KV
Sbjct  492   KADKALDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFDKV  551

Query  541   AVFNLPNLNGLAVSSFARRNLEDKLIAKGLPAKESSKIIKDFLNSNKELLEKSLNFNKAV  600
             AVFNLP+LN LA++SF RRNLEDKL +KGL+ +E++K+IKDFLNSNKEL+ K+LNFNKAV
Sbjct  552   AVFNLPDLNNLAITSFVRRNLEDKLATKGLSLQEANKLIKDFLNSNKELVGKALNFNKAV  611

Query  601   AESKNTGNYDGVKKAQKDLEKSIRKRERLEKEVTKQFESKSSNKNKMEAKAQANSHKDEI  660
             AE+KNTGNYD VKKAQKDLEKS++KRE+LEKEV+K++ESKS+NKNKMEAK+QANS+KDEI
Sbjct  612   AEAKNTGNYDEVKKAQKDLEKSLKKREHLEKEVAKKLESKSGNKNKMEAKSQANSQKDEI  671

Query  661   FVLINEGAHKEARIAAYSQNLKGIRRELSDKIENINKNLKDFGESFDALKSGKNKDFSKV  720
             F LIN  A+++AR  AY+QNLKGI+RELSDK+ENINK+LKDF+ SFD +K+GKNKDFSK 
Sbjct  672   FALINKEANRDARAIAYAQNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKA  731

Query  721   EETLKALQSSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSIKDVI  780
             EETLKAL++SVKDLGINPEWISKVENLN+ALNEFKNGKNKDFSKVTQAKSDLENSIKDVI
Sbjct  732   EETLKALKGSVKDLGINPEWISKVENLNTALNEFKNGKNKDFSKVTQAKSDLENSIKDVI  791

Query  781   INQEITDKVDNLNQAVLVAKAIGDFSGVEQALAELKNFSTD------QKNESFNVGKNSD  834
             INQ ITDKVDNLNQAV +AKA GDFSGVEQALA+LKNFS +      QKNE FN GKNS+
Sbjct  792   INQKITDKVDNLNQAVSIAKATGDFSGVEQALADLKNFSKGQLAQQAQKNEDFNTGKNSE  851

Query  835   LQKSVKSGVNGTLVGNGLSKTEATTLTKKISDIRKelnekfansnnnnnglknsTEPIYA  894
             + +SVK+GVNGTLVGNGLSK+EATTL+K++SDI+K   E    + NNNN      EPIYA
Sbjct  852   IYQSVKNGVNGTLVGNGLSKAEATTLSKNFSDIKK-ELEAKLGNFNNNNNNGLKNEPIYA  910

Query  895   QVNKKKTGQVASPEEPIYTQVAKKVNAKIDRLNQIASGLGGVGQAAGFPLKKHDKVDDLS  954
             +VNKKK+GQ ASPEEPIY+QVAKKVNAKIDRLNQIASGLGGVGQAAGFPLK+HDKVDDLS
Sbjct  911   KVNKKKAGQAASPEEPIYAQVAKKVNAKIDRLNQIASGLGGVGQAAGFPLKRHDKVDDLS  970

Query  955   KVGRSDSPEPIYATIDDLGGPFPLSRLGRSDSSEPIYATIDDLGGPSLKRYAGVDDLSKV  1014
             KVG S + EPIYATIDDLGG+FP                        LKR   VDDLSKV
Sbjct  971   KVGLSANHEPIYATIDDLGGSFP------------------------LKRHDKVDDLSKV  1006

Query  1015  GLSRDQKLTQKIGNLDQAVSEAKAGFFGNLEQTMDRLKDSTKKNVVNLWVESVKKVPASL  1074
             GLSR+Q L+QKI+NL+QAVSEAKAGFFGNLEQT+D LKDSTK N VNLW ES KKVPASL
Sbjct  1007  GLSRNQELAQKIDNLNQAVSEAKAGFFGNLEQTIDNLKDSTKYNSVNLWAESAKKVPASL  1066

Query  1075  QEKLDNYATNSHTRINSNVKNGTINEKATGMLTQKNPEWLKLVNDKIVAHNVGSTPLSDY  1134
               KLDNYA NSHTRINSNVKNG+INEKATGMLTQKNPEWLKLVNDKIVAHNVGS PLS+Y
Sbjct  1067  SAKLDNYAINSHTRINSNVKNGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEY  1126

Query  1135  DKIGFNQKNMKDYSDSFKFSTKLSNAVKNTKSGFVQFLTDSISAGSY----NPIKAEHGV  1190
             DKIGFNQKNMKDYSDSFKFSTKL+NAVK+TKSGF +FL++++S++SY       +AEHG+
Sbjct  1127  DKIGFNQKNMKDYSDSFKFSTKLNNAVKDTKSGFTRFLANAFSTASYYYFLAGENAEHGI  1186

Query  1191  KNINTKSGFQKS  1202
             KN+NTK+GFQKS
Sbjct  1187  KNVNTKGGFQKS  1198

22) cagA in NC_014256


> AY330637|20|G20|37811806|AAR03881.1|Helicobacter_pylori_Ca52|+|21859..25455|cagA|HP0547|CagA
Length=1198

 Score = 1480 bits (5617),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1013/1187 (86%), Positives = 1110/1187 (94%), Gaps = 8/1187 (0%)

Query  1     MTNETINQQPQTEAAFNPQQFINNLQVAFIKVDNAVASFDPDQKPIVDKNDRDNRQAFEK  60
             MTNETINQQPQTEAAFNPQQFINNLQVAF+KVDNAVAS+DPDQKPIVDKNDRDNRQAFE 
Sbjct  17    MTNETINQQPQTEAAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNRQAFEG  76

Query  61    ISQLREKFANKAIKNPTKKNQYFSNFISKSSDLINKDGLIDTGSSIKSFQKFGTQRYQIF  120
             ISQLRE ++NKAIKNPTKKNQYFS+FI KS+DLINKD L+D  SS KSFQKFG QRYQIF
Sbjct  77    ISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNLVDVESSTKSFQKFGDQRYQIF  136

Query  121   MNWVSHQKDPSQINTQKIRGFMENIIQPPISDDKEKAEFLRSAKQALAGIIIRNQIRSDQ  180
              +WVSHQ+DPS+INT+ IR FMENIIQPPI+DDKEKAEFL+SAKQA+AGIII NQIR+DQ
Sbjct  137   TSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQAFAGIIIGNQIRTDQ  196

Query  181   KFMGVFDESLKERQEAEKNGEPNGDPTGGDWFDIFLSFVFNKKQSSDLKETLNQEPVPHV  240
             KFMGVFDESLKERQEAEKNG    +PTGGDW+DIFLSFVFNKKQSSDLKETL+QEPVPHV
Sbjct  197   KFMGVFDESLKERQEAEKNG----GPTGGDWLDIFLSFVFNKKQSSDLKETLDQEPVPHV  252

Query  241   QPDVATTTTDIQSLPPESRDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLVHN  300
             QPD+ATTTTDIQ+LPPE+RDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLL+HN
Sbjct  253   QPDIATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHN  312

Query  301   NALSSVLMGSHDGIEPEKVSLLYGNNGGPEARHDWNATVGHKNQQGNNVATLINVHMKNG  360
             NALSSVLMGSH+GIEPEKVSLLYG NGG  A+HDWNATVG K+QQGNNVAT+INVHMKNG
Sbjct  313   NALSSVLMGSHNGIEPEKVSLLYGGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKNG  372

Query  361   SGLVIAGGEKGVNNPSFYLYKEDQLTGLKQALSQKEIQNKVDFMEFLAQNNAKLDNLSKK  420
             SGLVIAGGEKG+NNPSFYLYKEDQLTG ++ALSQ EIQNK++FMEFLAQNNAKLDNLS K
Sbjct  373   SGLVIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKINFMEFLAQNNAKLDNLSEK  432

Query  421   EKEKFQNEIEDFQKDHKAYLDALGNDHIAFVSKKDKKHLALVTEFGSGDLSYTLKDYGKK  480
             EKEKF+ EIEDFQKD KAYLDALGND+IAFVSKKD KH AL+TEFG+GDLSYTLKDYGKK
Sbjct  433   EKEKFRTEIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGKK  492

Query  481   ADKALDREIKTTLQGSLKHDGVMFVDYSNFKYTNASKSPDKGVGATNGVSHLEANLSKVA  540
             ADKALDRE + TLQGSLKHDGVMFVDYSNFKYTNASK+P+KGVG TNGVSHLEA + KVA
Sbjct  493   ADKALDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFDKVA  552

Query  541   VFNLPNLNNLAITSYIRRDLEEKLGAKGLSPQEANKLIKDFLNSNKELVGKVLNLNKAVA  600
             VFNLP+LNNLAITS++RR+LE+KL++KGLS QEANKLIKDFLNSNKELVGK LN+NKAVA
Sbjct  553   VFNLPDLNNLAITSFVRRNLEDKLATKGLSLQEANKLIKDFLNSNKELVGKALNFNKAVA  612

Query  601   EAKNTGNYDEVKKAQKNLEKSLrkrehlekevvkkleNRNDNKNRMEAKAQANSQKDKIF  660
             EAKNTGNYDEVKKAQK+LEKSL+KREHLEKEV KKLE++++NKN+MEAK+QANSQKD IF
Sbjct  613   EAKNTGNYDEVKKAQKDLEKSLKKREHLEKEVAKKLESKSGNKNKMEAKSQANSQKDEIF  672

Query  661   AIINEEASKEARVAACVQKFKGIKMELSDKFENInknlkdfdksfddfkngknkdfskAE  720
             A+IN EA+++AR  A  Q++KGIK ELSDK+ENINK+LKDF KSFD+FKNGKNKDFSKAE
Sbjct  673   ALINKEANRDARAIAYAQNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKAE  732

Query  721   ETLKALKGSVKDLGINPEWISKVENLNTALNDFKNGKNKDFSKVTQAKSDLENSIKDVII  780
             ETLKALKGSVKDLGINPEWISKVENLNTALN+FKNGKNKDFSKVTQAKSDLENSIKDVII
Sbjct  733   ETLKALKGSVKDLGINPEWISKVENLNTALNEFKNGKNKDFSKVTQAKSDLENSIKDVII  792

Query  781   NQKITDKVDNLNQAVSVAKATGDFSGVEQALADLKNFSKGQLAQQAQKNEDFNTGKNSEL  840
             NQKITDKVDNLNQAVS+AKATGDFSGVEQALADLKNFSKGQLAQQAQKNEDFNTGKNSE+
Sbjct  793   NQKITDKVDNLNQAVSIAKATGDFSGVEQALADLKNFSKGQLAQQAQKNEDFNTGKNSEI  852

Query  841   YQSvkngvngtlvgnglsgIEATALTKNFSDIkkelnekfknfnnnnnglknSGEPIYAQ  900
             YQSVKNGVNGTLVGNGLS  EAT+L+KNFSDIKKEL+ K+ NFNNNNN   ++ EPIYA+
Sbjct  853   YQSVKNGVNGTLVGNGLSKAEATTLSKNFSDIKKELEAKLGNFNNNNNNGLKN-EPIYAK  911

Query  901   VNKKKTGQVASPEEPIYTQVAKKVKAKIDQFNQVASGLGGVGQ-AGFSLKGHTKVDDLSK  959
             VNKKK+GQ ASPEEPIY+QVAKKV+AKID++NQ+ASGLGGVGQ AGF+LK H KVDDLSK
Sbjct  912   VNKKKAGQAASPEEPIYAQVAKKVNAKIDRLNQIASGLGGVGQAAGFPLKRHDKVDDLSK  971

Query  960   VGRSVSPEPIYATIDDLGGPFPLKRHDKVDDLSKVGLSRNQELAQKIDNLNQAVSEAKAC  1019
             VG S + EPIYATIDDLGG+FPLKRHDKVDDLSKVGLSRNQELAQKIDNLNQAVSEAKA 
Sbjct  972   VGLSANHEPIYATIDDLGGSFPLKRHDKVDDLSKVGLSRNQELAQKIDNLNQAVSEAKAG  1031

Query  1020  HFDNLDQMIDKLKDSTKKNVMNLYVESAKKVPTSLSAKLDNYAINSHTRINSNVKNGTIN  1079
              F+NL+Q ID+LKDSTK N +NL  ESAKKVP+SLSAKLDNYAINSHTRINSNVKNG+IN
Sbjct  1032  FFGNLEQTIDNLKDSTKYNSVNLWAESAKKVPASLSAKLDNYAINSHTRINSNVKNGAIN  1091

Query  1080  EKVTGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFSTRLSN  1139
             EK TGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFST+L+N
Sbjct  1092  EKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFSTKLNN  1151

Query  1140  AVKDIKSGFVQFLTNTFSMGSYS--LMKASVEHGVKNTNTKGGFQKS  1184
             AVKD KSGF +FL+N+FS +SY   L   + EHG+KN NTKGGFQKS
Sbjct  1152  AVKDTKSGFTRFLANAFSTASYYYFLAGENAEHGIKNVNTKGGFQKS  1198

23) HPSAT_04065 in NC_017359


> AY330637|20|G20|37811806|AAR03881.1|Helicobacter_pylori_Ca52|+|21859..25455|cagA|HP0547|CagA
Length=1198

 Score = 1477 bits (5606),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 931/1176 (80%), Positives = 1057/1176 (90%), Gaps = 30/1176 (2%)

Query  13    DQTPSQTAFDPQQFINNLQVAFIKVDSAVASFDPDQKPIVDKNDRDNRQAFNKISQLREE  72
             +Q  +++AF+PQQFINNLQVAF+KVD+AVAS+DPDQKPIVDKNDRDNRQAF+ ISQLREE
Sbjct  24    QQPQTEAAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNRQAFEGISQLREE  83

Query  73    YANKAIKNPTKKNQYFSEFIGKSNDLINKDNLIDTDSSTKSFEKFGTERYQIFMNWVSHQ  132
             Y+NKAIKNPTKKNQYFS+FI+KSNDLINKDNL+D +SSTKSF+KFG +RYQIF +WVSHQ
Sbjct  84    YSNKAIKNPTKKNQYFSDFIDKSNDLINKDNLVDVESSTKSFQKFGDQRYQIFTSWVSHQ  143

Query  133   KDPSKINTQKIRNFMENIIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSDEKFMGVFE  192
             +DPSKINT+ IRNFMENIIQPPI+DDKEKAEFL+SAKQ+FAGIIIGNQIR+D+KFMGVF+
Sbjct  144   NDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQAFAGIIIGNQIRTDQKFMGVFD  203

Query  193   ESLKERQEAEKKGELAGGDWFDIFLSFVFGKEQSSDLKETLNQEPRPSVEQNIATTPTDI  252
             ESLKERQEAEK+G  +GGDW+DIFLSFVF K QSSDLKETL+QEP P V+ +IATT TDI
Sbjct  204   ESLKERQEAEKNGGPTGGDWLDIFLSFVFNKKQSSDLKETLDQEPVPHVQPDIATTTTDI  263

Query  253   QGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALSSMLMGSH  312
             QGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALSS+LMGSH
Sbjct  264   QGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALSSVLMGSH  323

Query  313   SNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINMHLKNGSGLVIAGNENG  372
             + IEPEKVSLLYG+NGG  A+HDWNATVGYK+QQGNNVAT+IN+H+KNGSGLVIAG E+G
Sbjct  324   NGIEPEKVSLLYGGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKNGSGLVIAGGEKG  383

Query  373   INNPSFYLYKKDQLTGLKQALSQEEIQNKVDFMEFLAQNNARLDNLSEEEKGKFQNEIGN  432
             INNPSFYLYK DQLTG ++ALSQEEIQNK++FMEFLAQNNA+LDNLSE EK KF+ EI +
Sbjct  384   INNPSFYLYKEDQLTGSQRALSQEEIQNKINFMEFLAQNNAKLDNLSEKEKEKFRTEIED  443

Query  433   FQKDPKAYLDALGNDRIAFVSKKDQKHLALVTEFGNGGLSYTLKDYGKKQDRALDRETKT  492
             FQKD+KAYLDALGNDRIAFVSKKD KH AL+TEFGNG+LSYTLKDYGKK D+ALDRE + 
Sbjct  444   FQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGKKADKALDREKNV  503

Query  493   TLQGNLKDDGVMFVNYSNFKYTNASKSPNEGIGATNGVSHLEANFSKVAVFNLSDLNSLA  552
             TLQG+LK+DGVMFV+YSNFKYTNASK+PN G+G TNGVSHLEA F KVAVFNL+DLN+LA
Sbjct  504   TLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFDKVAVFNLPDLNNLA  563

Query  553   ISSFARRNLEDTLIAKGLPPKEANKIIKDFLNSNKELLGKSLNFNKAVAEAKNTGNYDGV  612
             I+SF RRNLED L +KGL+ +EANK+IKDFLNSNKEL+GK+LNFNKAVAEAKNTGNYD V
Sbjct  564   ITSFVRRNLEDKLATKGLSLQEANKLIKDFLNSNKELVGKALNFNKAVAEAKNTGNYDEV  623

Query  613   KKAQKDLEKSIRKRELLEKEVTKKFESKSGNKNKMEAKAQANSKKDEIFALINKEAYKDA  672
             KKAQKDLEKS++KRE LEKEV+KK+ESKSGNKNKMEAK+QANS+KDEIFALINKEA +DA
Sbjct  624   KKAQKDLEKSLKKREHLEKEVAKKLESKSGNKNKMEAKSQANSQKDEIFALINKEANRDA  683

Query  673   RITAYAQNLKNIKRELSDKIENINKNLKDFGQSFDALKSGKNKDFSKAEETLKALKSSVK  732
             R  AYAQNLK IKRELSDK+ENINK+LKDF++SFD +K+GKNKDFSKAEETLKALK+SVK
Sbjct  684   RAIAYAQNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKAEETLKALKGSVK  743

Query  733   DLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSIKDVLINQEITDKVDNL  792
             DLGINPEWISKVENLN+ALNEFKNGKNKDFSKVTQAKSDLENSIKDV+INQ ITDKVDNL
Sbjct  744   DLGINPEWISKVENLNTALNEFKNGKNKDFSKVTQAKSDLENSIKDVIINQKITDKVDNL  803

Query  793   NQAVLIAKAIGDFSGVEQALAELKNFSTDQ-----------KVGKNSDLQKSVKNGVNEI  841
             NQAV IAKA GDFSGVEQALA+LKNFS +Q           + GKNS++ +SVKNGVN  
Sbjct  804   NQAVSIAKATGDFSGVEQALADLKNFSKGQLAQQAQKNEDFNTGKNSEIYQSVKNGVNGT  863

Query  842   LVGNGLSKTEATTLTKKFSDIKKELNEKFANFNKNNDGLKNSAEPIYAQVNKKKTGQAAS  901
             LVGNGLSK+EATTL+K+FSDIKKEL+ K     +NN+      EPIYA+VNKKK+GQAAS
Sbjct  864   LVGNGLSKAEATTLSKNFSDIKKELEAK-LGNFNNNNNNGLKNEPIYAKVNKKKAGQAAS  922

Query  902   PEEPIYTQVAKKVNAKIDQLNKNASASKGVG--------------DFSGAGRLDSPEPIY  947
             PEEPIY+QVAKKVNAKID+LN+ AS+  GVG              D+S  G   + EPIY
Sbjct  923   PEEPIYAQVAKKVNAKIDRLNQIASGLGGVGQAAGFPLKRHDKVDDLSKVGLSANHEPIY  982

Query  948   ATIDDLGGSFSLKRHAKVDDLTKVGLSREQELTQKIGNLNQAVSEAKAGFFGNLEQTMDR  1007
             ATIDDLGGSF+LKRH KVDDL+KVGLSR+QEL+QKI+NLNQAVSEAKAGFFGNLEQT+D 
Sbjct  983   ATIDDLGGSFPLKRHDKVDDLSKVGLSRNQELAQKIDNLNQAVSEAKAGFFGNLEQTIDN  1042

Query  1008  LKDSTKKNVVNLWVEDTKKVPTSLQAKLDNYTTNNHTRINSNVKNGTINEKAIGMLTQKN  1067
             LKDSTK N VNLW E +KKVP+SL AKLDNY+ N+HTRINSNVKNG+INEKA GMLTQKN
Sbjct  1043  LKDSTKYNSVNLWAESAKKVPASLSAKLDNYAINSHTRINSNVKNGAINEKATGMLTQKN  1102

Query  1068  PEWLKLVNDKIVAHNVGSTPLSDYDKIGFNQKNMKDYSDSFKFSTKLSNAVKNIKSGFEQ  1127
             PEWLKLVNDKIVAHNVGS PLS+YDKIGFNQKNMKDYSDSFKFSTKL+NAVK+ KSGF +
Sbjct  1103  PEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDTKSGFTR  1162

Query  1128  FLTDCISAGSY----NPMKAEHGVKNINTKSGFQKS  1159
             FL++ +S++SY       +AEHG+KN+NTK+GFQKS
Sbjct  1163  FLANAFSTASYYYFLAGENAEHGIKNVNTKGGFQKS  1198

24) cagA in NC_020508


> AY330637|20|G20|37811806|AAR03881.1|Helicobacter_pylori_Ca52|+|21859..25455|cagA|HP0547|CagA
Length=1198

 Score = 1441 bits (5471),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 955/1189 (81%), Positives = 1071/1189 (91%), Gaps = 49/1189 (4%)

Query  21    FVPQRFINNLQVAFLKVDNAVASFDPDQKPIVDKNDRDNRQAFEKISQLREEFankaikn  80
             F PQ+FINNLQVAFLKVDNAVAS+DPDQKPIVDKNDRDNRQAFE ISQLREE++NKAIKN
Sbjct  32    FNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNRQAFEGISQLREEYSNKAIKN  91

Query  81    pakknQYFSNFISKSNDLIDKDSLIDIGSSIKSFQKFGTQRYQIFMNWVSHQKDPSKINT  140
             P+KKNQYFS+FI KSNDLI+KD+L+D+ SS KSFQKFG QRYQIF +WVSHQ+DPSKINT
Sbjct  92    PTKKNQYFSDFIDKSNDLINKDNLVDVESSTKSFQKFGDQRYQIFTSWVSHQNDPSKINT  151

Query  141   QRIRSFMENIIQPPISDDKEKAEFLRSAKQTFAGIIIGNQIQSDQKFMGVFEESLKERQE  200
             + IR+FMENIIQPPI+DDKEKAEFL+SAKQ+FAGIIIGNQI++DQKFMGVF+ESLKERQE
Sbjct  152   RSIRNFMENIIQPPIPDDKEKAEFLKSAKQAFAGIIIGNQIRTDQKFMGVFDESLKERQE  211

Query  201   AEKNGEPTGEPTGGDWLDIFLSFVFNKKQSSDLKETLNQEPVPHVQPDIATTTTDIQSLP  260
             AEKNG PTG    GDWLDIFLSFVFNKKQSSDLKETL+QEPVPHVQPDIATTTTDIQ+LP
Sbjct  212   AEKNGGPTG----GDWLDIFLSFVFNKKQSSDLKETLDQEPVPHVQPDIATTTTDIQGLP  267

Query  261   PEARDFLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALSSVLMGSHNGIE  320
             PEARD+LDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALSSVLMGSHNGIE
Sbjct  268   PEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALSSVLMGSHNGIE  327

Query  321   PEKVSLLYGGNGGPEARHDWNATVGYKNQQGDNVATLINVHMKNGSGLVIAGGEKGVNNP  380
             PEKVSLLYGGNGG  A+HDWNATVGYK+QQG+NVAT+INVHMKNGSGLVIAGGEKG+NNP
Sbjct  328   PEKVSLLYGGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKNGSGLVIAGGEKGINNP  387

Query  381   SFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSKKEKEKFQNEIEDFQKD  440
             SFYLYKEDQLTG ++ALSQEEIQNK++FMEFLAQNNAKLDNLS KEKEKF+ EIEDFQKD
Sbjct  388   SFYLYKEDQLTGSQRALSQEEIQNKINFMEFLAQNNAKLDNLSEKEKEKFRTEIEDFQKD  447

Query  441   SKAYLDALGNDHIAFVSKKDKKHLALVAEFGNGELSYTLKDYGKKQDKALDRETKTTLQG  500
             SKAYLDALGND+IAFVSKKD KH AL++EFGNG+LSYTLKDYGKK DKALDRE + TLQG
Sbjct  448   SKAYLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGKKADKALDREKNVTLQG  507

Query  501   NLKHDGVMFVNYSNFKYTNVSKSPDKGVGTTNGVSHLEANFSKVAVFNLPNLNNLAITNY  560
             +LKHDGVMFV+YSNFKYTN SK+P+KGVG TNGVSHLEA F KVAVFNLP+LNNLAIT++
Sbjct  508   SLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFDKVAVFNLPDLNNLAITSF  567

Query  561   IRRDLEDKLLAKGLSPQEANKLIKDFLNSNKELVEKALNFNKTVAEAKNTGNYDEVKKAQ  620
             +RR+LEDKL +KGLS QEANKLIKDFLNSNKELV KALNFNK+VAEAKNTGNYDEVKKAQ
Sbjct  568   VRRNLEDKLATKGLSLQEANKLIKDFLNSNKELVGKALNFNKAVAEAKNTGNYDEVKKAQ  627

Query  621   KDLEKSLRKREHLEKEVTKKLESRNDNKNRMEAKAQANSQKDKIFALINQEASKEARAVA  680
             KDLEKSL+KREHLEKEV+KKLES+++NKN+MEAK+QANSQKD IFALIN+EA+++ARA+A
Sbjct  628   KDLEKSLKKREHLEKEVAKKLESKSGNKNKMEAKSQANSQKDEIFALINKEANRDARAIA  687

Query  681   FDQNLKSIRSELFDKLENINKNLKNFGKSFDELKNGKNNDFSKAEETLKALKDSVKDLGI  740
             + QNLK+I+ EL DKLENINK+LK+F+KSFDE+KNGKN+DFSKAEETLKALK+SVKDLGI
Sbjct  688   YAQNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKAEETLKALKGSVKDLGI  747

Query  741   NPEWISKVENLNTALNEFKNGKNKDFSKVTQAKSDLENSIKDVIINQKITDKVDNLNQAV  800
             NPEWISKVENLNTALNEFKNGKNKDFSKVTQAKSDLENSIKDVIINQKITDKVDNLNQAV
Sbjct  748   NPEWISKVENLNTALNEFKNGKNKDFSKVTQAKSDLENSIKDVIINQKITDKVDNLNQAV  807

Query  801   SIAKATSDFSRVEQALAELKNLS-------------LDLGKNSDLQKSVKngvngtlvgn  847
             SIAKAT+DFS VEQALA+LKN+S             ++ GKNS++ +SVKNGVNGTLVGN
Sbjct  808   SIAKATGDFSGVEQALADLKNFSKGQLAQQAQKNEDFNTGKNSEIYQSVKNGVNGTLVGN  867

Query  848   glSKTEATTLTKNFSDIRKELneklfgnsnnnnnglknsTEPIYAKVNKKKTGQAASPEE  907
             GLSK+EATTL+KNFSDI+KEL       + NNNN      EPIYAKVNKKK+GQAASPEE
Sbjct  868   GLSKAEATTLSKNFSDIKKEL--EAKLGNFNNNNNNGLKNEPIYAKVNKKKAGQAASPEE  925

Query  908   PIYAQVAKKVSAKIDQLNE-----------ATLAINR--KIDRINKIasagkgvggfsga  954
             PIYAQVAKKV+AKID+LN+           A ++++R  K+D ++K+             
Sbjct  926   PIYAQVAKKVNAKIDRLNQIASGLGGVGQAAGFPLKRHDKVDDLSKV-------------  972

Query  955   grsasPEPIYATIDFDEANQAGFPLRRSAAVNDLSKVGLSREQELTRRIGNLNQAVSEAK  1014
             G SA+ EPIYATID      ++FPL+R   V+DLSKVGLSR+QEL+++I+NLNQAVSEAK
Sbjct  973   GLSANHEPIYATID---DLGGSFPLKRHDKVDDLSKVGLSRNQELAQKIDNLNQAVSEAK  1029

Query  1015  TCHFDNLDQMIDKLKDSTKKNVMNLYVESAKKVPTSLSAKLDDYATNSHTRINSNVKNGA  1074
             +  F+NL+Q ID+LKDSTK N +NL  ESAKKVP+SLSAKLD+YA NSHTRINSNVKNGA
Sbjct  1030  AGFFGNLEQTIDNLKDSTKYNSVNLWAESAKKVPASLSAKLDNYAINSHTRINSNVKNGA  1089

Query  1075  INEKATGMLTQKNPEWLKLVNDKIVAHNVGSVSLSEYDKIGFNQKNMKDYSDSFKFSTKL  1134
             INEKATGMLTQKNPEWLKLVNDKIVAHNVGSV+LSEYDKIGFNQKNMKDYSDSFKFSTKL
Sbjct  1090  INEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFSTKL  1149

Query  1135  NNAIKDIKSGFVQFLTNTFSTASYYC-LAEENAKHGIKNANTKGGFQKS  1182
             NNA+KD KSGF +FL+N+FSTASYY  LA ENA HGIKN NTKGGFQKS
Sbjct  1150  NNAVKDTKSGFTRFLANAFSTASYYYFLAGENAEHGIKNVNTKGGFQKS  1198

25) HPSH417_02620 in NC_017739


> AY330637|20|G20|37811806|AAR03881.1|Helicobacter_pylori_Ca52|+|21859..25455|cagA|HP0547|CagA
Length=1198

 Score = 1438 bits (5458),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 928/1211 (77%), Positives = 1079/1211 (90%), Gaps = 43/1211 (3%)

Query  1     MANETINQPDQTPSQTAFDSQQFINNLQVAFIKVDSAVASFDPDQKPIVDKNDRDNRQAF  60
             M+NETINQ  Q  +++AF++QQFINNLQVAF+KVD+AVAS+DPDQKPIVDKNDRDNRQAF
Sbjct  17    MTNETINQ--QPQTEAAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNRQAF  74

Query  61    DGISQLREEYANKAIKNPTKKNQYFSDFISKSNDLINKDNLIDTDSSTKSFQKFGTERYQ  120
             +GISQLREEY+NKAIKNPTKKNQYFSDFI KSNDLINKDNL+D +SSTKSFQKFG +RYQ
Sbjct  75    EGISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNLVDVESSTKSFQKFGDQRYQ  134

Query  121   IFMNWVSHQKDPSKINTQKIRNFMENIIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRS  180
             IF +WVSHQ+DPSKINT+ IRNFMENIIQPPI+DDKEKAEFL+SAKQ+FAGIIIGNQIR+
Sbjct  135   IFTSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQAFAGIIIGNQIRT  194

Query  181   DEKFMGVFEESLKERQEAENNGEPAGGDWLDIFLSFVFGKKQSSDLKETLNQEPRPNVEQ  240
             D+KFMGVF+ESLKERQEAE+NG P+GGDWLDIFLSFVF KKQSSDLKETL+QEP P+V+ 
Sbjct  195   DQKFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSFVFNKKQSSDLKETLDQEPVPHVQP  254

Query  241   NIATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLVVHNNA  300
             +IATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQL++HNNA
Sbjct  255   DIATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNA  314

Query  301   LSSMLMGSHSNMEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLKNGSG  360
             LSS+LMGSH+ +EPEKVSLLYG+NGG  A+HDWNATVGYK+QQGNNVAT+IN H+KNGSG
Sbjct  315   LSSVLMGSHNGIEPEKVSLLYGGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKNGSG  374

Query  361   LIIAGNENGINNPSFYLYKKDQLTGLEQALSQEEIQNKLGFMEFLAQNSARHVGLNNLSK  420
             L+IAG E+GINNPSFYLYK DQLTG ++ALSQEEIQNK+ FMEFLAQN+A+   L+NLS 
Sbjct  375   LVIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKINFMEFLAQNNAK---LDNLSE  431

Query  421   EEKEKFQTEIGNFQKDPKPYLDSLGNDRIAFVSKKDSKHLALVTEFGNGELSYTLKDYGK  480
              EKEKF+TEI +FQKD+K+YLD+LGNDRIAFVSKKD+KH AL+TEFGNG+LSYTLKDYGK
Sbjct  432   KEKEKFRTEIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGK  491

Query  481   KPDRALDRETKTTLQGNLKHDGVMFVNYSNFKYTNASKSPNEGIGATNGVSHLEANFSKV  540
             K+D+ALDRE + TLQG+LKHDGVMFV+YSNFKYTNASK+PN G+G TNGVSHLEA F KV
Sbjct  492   KADKALDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFDKV  551

Query  541   AVFNLASSNELTISNFAKRNLEDKLIAKGLSGKESNKLIKDFLNSNKELLEKSLNFNKAV  600
             AVFNL+  N+L+I++F +RNLEDKL +KGLS +E+NKLIKDFLNSNKEL+ K+LNFNKAV
Sbjct  552   AVFNLPDLNNLAITSFVRRNLEDKLATKGLSLQEANKLIKDFLNSNKELVGKALNFNKAV  611

Query  601   AEAKNTGNYGGVKKAQKDLEKSIRKREHLEKEVTKKFESKSGNKNKMEAKAQANNQKDEI  660
             AEAKNTGNY+ VKKAQKDLEKS++KREHLEKEV+KK+ESKSGNKNKMEAK+QAN+QKDEI
Sbjct  612   AEAKNTGNYDEVKKAQKDLEKSLKKREHLEKEVAKKLESKSGNKNKMEAKSQANSQKDEI  671

Query  661   FRLINEGAHKEARNIAYAQNLKGIRKELSDRMGNINKNLKDFGESFDALKSGKNKDFSKA  720
             F LIN  A+++AR IAYAQNLKGI++ELSD++ NINK+LKDF+ SFD +K+GKNKDFSKA
Sbjct  672   FALINKEANRDARAIAYAQNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKA  731

Query  721   EETLKALKSSVKDLNINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSIKDVI  780
             EETLKALK+SVKDL INPEWISKVENLN+ALNEFKNGKNKDFSKVTQAKSDLENSIKDVI
Sbjct  732   EETLKALKGSVKDLGINPEWISKVENLNTALNEFKNGKNKDFSKVTQAKSDLENSIKDVI  791

Query  781   INQQITDKVNNLNQAVSTAKATGDFSRVEQVLAGFKKF----LTDQ--KNENFNVGKNSD  834
             INQ+ITDKV+NLNQAVS AKATGDFS VEQ LA++K+F    L++Q  KNE+FN GKNS+
Sbjct  792   INQKITDKVDNLNQAVSIAKATGDFSGVEQALADLKNFSKGQLAQQAQKNEDFNTGKNSE  851

Query  835   LQKSvkngvngtlvgnglsvTEATTLAKKFSDIKKELNEKFANFNKNSNGLKNSAEPIYA  894
             + +SVKNGVNGTLVGNGLS +EATTL+K+FSDIKKEL+ K++N  +N+N      EPIYA
Sbjct  852   IYQSVKNGVNGTLVGNGLSKAEATTLSKNFSDIKKELEAKLGN-FNNNNNNGLKNEPIYA  910

Query  895   QVNKKKTGQVASPEESIYTQVAKEVNEKINRLNEKASASKGVGNFSGAGRLDRSEPIYAT  954
             +VNKKK+GQ ASPEE+IY+QVAK VN KI+RLN+ AS+  GVG+                
Sbjct  911   KVNKKKAGQAASPEEPIYAQVAKKVNAKIDRLNQIASGLGGVGQ----------------  954

Query  955   IDDLDGSSPLKRYAKVDDLSKAGRLDSPEPIYATIDDLGGPFSLKKYAKVDDLTKVGFSR  1014
                  ++ PLKR  KVDDLSK G   + EPIYATIDDLGG+F+LK+  KVDDL+KVG+SR
Sbjct  955   ----AAGFPLKRHDKVDDLSKVGLSANHEPIYATIDDLGGSFPLKRHDKVDDLSKVGLSR  1010

Query  1015  EQELTQKIGNLNQAVSEAKAGFFGNLEQTMDRLKDSTKKNVVNLWFEGARKVPISLPSSQ  1074
             +QEL+QKI+NLNQAVSEAKAGFFGNLEQT+D LKDSTK N VNLW E+A+KVP SL+   
Sbjct  1011  NQELAQKIDNLNQAVSEAKAGFFGNLEQTIDNLKDSTKYNSVNLWAESAKKVPASLS---  1067

Query  1075  AKLDNYATNSHTRINSNVKNGTINEKAIGMLTQKNPEWLKLVNDKIVAHNVGSTPLSDYD  1134
             AKLDNYA NSHTRINSNVKNG+INEKA GMLTQKNPEWLKLVNDKIVAHNVGS PLS+YD
Sbjct  1068  AKLDNYAINSHTRINSNVKNGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYD  1127

Query  1135  KIGFNQKNMKGYSDSFKFSTKLSNAVKNIKSGFEQLLTDCISAGSY----SPKKAEYGV-  1189
             KIGFNQKNMK+YSDSFKFSTKL+NAVK+ KSGF ++L++ +S++SY    +  +AE G+ 
Sbjct  1128  KIGFNQKNMKDYSDSFKFSTKLNNAVKDTKSGFTRFLANAFSTASYYYFLAGENAEHGIK  1187

Query  1190  ---TKSGFQKS  1197
                TK+GFQKS
Sbjct  1188  NVNTKGGFQKS  1198

26) MWE_0973 in NC_017926


> AY330637|20|G20|37811806|AAR03881.1|Helicobacter_pylori_Ca52|+|21859..25455|cagA|HP0547|CagA
Length=1198

 Score = 1434 bits (5443),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 937/1211 (78%), Positives = 1066/1211 (89%), Gaps = 38/1211 (3%)

Query  1     MTNETIDQTTTPDQTLNQTDFVPQRFINNLQVAFLKVDDAVASFDPDQKPIVDKNDRDNR  60
             +  ET+ + T  +Q   ++ F PQ+FINNLQVAFLKVD+AVAS+DPDQKPIVDKNDRDNR
Sbjct  12    IEGETMTNETINQQPQTEAAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNR  71

Query  61    QAFEKISQLREEYANKAIKNPTKKNQYFSDFINKSNDLINKDNLIAVDSSVESFKKFGDQ  120
             QAFE ISQLREEY+NKAIKNPTKKNQYFSDFI+KSNDLINKDNL+ V+SS  SF+KFGDQ
Sbjct  72    QAFEGISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNLVDVESSTKSFQKFGDQ  131

Query  121   RYQIFTSWVSLQKDPSKINTQQIRNFMENIIQPPISDDKEKAEFLRSAKQSFAGIIIGNQ  180
             RYQIFTSWVS Q+DPSKINT+ IRNFMENIIQPPI+DDKEKAEFL+SAKQ+FAGIIIGNQ
Sbjct  132   RYQIFTSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQAFAGIIIGNQ  191

Query  181   IRSDEKFMGVFDESLKERQEAEKNGEPDGGDWLDIFLSFVFNKKQSSDLKETLHQEPRPD  240
             IR+D+KFMGVFDESLKERQEAEKNG P GGDWLDIFLSFVFNKKQSSDLKETL+QEP P+
Sbjct  192   IRTDQKFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSFVFNKKQSSDLKETLDQEPVPH  251

Query  241   FEQNIATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDAEGVADIDPNYKFNQLLIH  300
              + +IATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLD EGVADIDPNYKFNQLLIH
Sbjct  252   VQPDIATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIH  311

Query  301   NNALSSVLMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGSNVATLINAHLNN  360
             NNALSSVLMGSH+ IEPEKVSLLYG+NGG  A+HDWNATVGYK+QQG+NVAT+IN H++N
Sbjct  312   NNALSSVLMGSHNGIEPEKVSLLYGGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKN  371

Query  361   GSGLVIAGNEDGIKNPSFYLYKQDQLTGLKQALSQEEIQNKVDFMEFLAQNNARLDSLSE  420
             GSGLVIAG E GI+NPSFYLYK+DQLTG ++ALSQEEIQNK++FMEFLAQNNA+LD+LSE
Sbjct  372   GSGLVIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKINFMEFLAQNNAKLDNLSE  431

Query  421   KEKEKFQTEIEDFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGEVSYTLKDYGK  480
             KEKEKF+TEIEDFQKD KAYLDALGND+IAFVSKKD KH AL+TEFGNG++SYTLKDYGK
Sbjct  432   KEKEKFRTEIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGK  491

Query  481   KQDKALDGETKTTLQGSLKYDGVMFVNYSNFKYTNASKSPDKGVGTTNGVSHLEANFSKV  540
             K DKALD E + TLQGSLK DGVMFV+YSNFKYTNASK+P+KGVG TNGVSHLEA F KV
Sbjct  492   KADKALDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFDKV  551

Query  541   AVFNLPNLNNLAITNYIRRDLEDKLWAKGLSSQEANKLIKDFLNSNKELVGKVSNFNKAV  600
             AVFNLP+LNNLAIT+++RR+LEDKL +KGLS QEANKLIKDFLNSNKELVGK  NFNKAV
Sbjct  552   AVFNLPDLNNLAITSFVRRNLEDKLATKGLSLQEANKLIKDFLNSNKELVGKALNFNKAV  611

Query  601   AEAKNTGNYDEVKKAQKDLEKSIRKREHLEKEVAKKLESRNDNKNGMEAKAQANSQKDKI  660
             AEAKNTGNYDEVKKAQKDLEKS++KREHLEKEVAKKLES+++NKN MEAK+QANSQKD I
Sbjct  612   AEAKNTGNYDEVKKAQKDLEKSLKKREHLEKEVAKKLESKSGNKNKMEAKSQANSQKDEI  671

Query  661   FALINQEASKEARAAAFDPNLKGIRSELSDKLENINKNLKDFGKSFDELKNGNNKDFSKA  720
             FALIN+EA+++ARA A+  NLKGI+ ELSDKLENINK+LKDF+KSFDE+KNG+NKDFSKA
Sbjct  672   FALINKEANRDARAIAYAQNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKA  731

Query  721   EETLKTLKDSMKDLGINPEWISKVENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVS  780
             EETLK+LK+S+KDLGINPEWISKVENLN+ALN+FKNGKNKDFSKVTQAKSDLENSIKDV 
Sbjct  732   EETLKALKGSVKDLGINPEWISKVENLNTALNEFKNGKNKDFSKVTQAKSDLENSIKDVI  791

Query  781   INQKITDKVDNLNQAVSEAKLTGDFSKVEQALAELKNLSLDQI------------GKNSD  828
             INQKITDKVDNLNQAVS AK TGDFS VEQALA+LKN+S +Q+            GKNS+
Sbjct  792   INQKITDKVDNLNQAVSIAKATGDFSGVEQALADLKNFSKGQLAQQAQKNEDFNTGKNSE  851

Query  829   LQKSVKngvngtlvgnglSKTEATTLTKNFSDIRKElneklfgnsnnnnnglknnTEPIY  888
             + +SVKNGVNGTLVGNGLSK+EATTL+KNFSDI+KE        + NNNN    + EPIY
Sbjct  852   IYQSVKNGVNGTLVGNGLSKAEATTLSKNFSDIKKE--LEAKLGNFNNNNNNGLKNEPIY  909

Query  889   AQVNKKKAGQATSPEEPIYAQVNKKKAGQATSPEEPIYTQVAKKVNARIDRLNKIASTIN  948
             A+VNKKKAGQA+SPEEPIYA                   QVAKKVNA+IDRLN+IAS + 
Sbjct  910   AKVNKKKAGQAASPEEPIYA-------------------QVAKKVNAKIDRLNQIASGLG  950

Query  949   GKIDQLNRTASANKGVGDFSGVGQAASPEPIYATIDFDEANQAGFPLRRSAAVNDLSKVG  1008
             G  +        +  V+D+S VG +A+ EPIYATID      ++FPL+R   V+DLSKVG
Sbjct  951   GVGQAAGFPLKRHDKVDDLSKVGLSANHEPIYATID---DLGGSFPLKRHDKVDDLSKVG  1007

Query  1009  LSREQELTRRIGDLNQAVSEAKTGHFGKLEQKIDELKDSTKKNAVSLWVESAKQVPTGLQ  1068
             LSR+QEL+++I++LNQAVSEAK+G FG+LEQ ID+LKDSTK N+V+LW ESAK+VP++L 
Sbjct  1008  LSRNQELAQKIDNLNQAVSEAKAGFFGNLEQTIDNLKDSTKYNSVNLWAESAKKVPASLS  1067

Query  1069  AKLDNYATNSHTRINSNVKNGGINEKATGMLTQKNPEWLKLVNNKIVAHNVGSIPLSDYD  1128
             AKLDNYA NSHTRINSNVKNG+INEKATGMLTQKNPEWLKLVN+KIVAHNVGS+PLS+YD
Sbjct  1068  AKLDNYAINSHTRINSNVKNGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYD  1127

Query  1129  KIGFNQKNMKDYSDSFKFSTKLNNAVKDIKSSFVQFLTNTFSQGSYN--LMKANVEHGVK  1186
             KIGFNQKNMKDYSDSFKFSTKLNNAVKD KS+F +FL+N+FS +SY   L   N EHG+K
Sbjct  1128  KIGFNQKNMKDYSDSFKFSTKLNNAVKDTKSGFTRFLANAFSTASYYYFLAGENAEHGIK  1187

Query  1187  NTNTKSGFQKS  1197
             N NTK+GFQKS
Sbjct  1188  NVNTKGGFQKS  1198

27) HPSH169_02815 in NC_017740


> AY330637|20|G20|37811806|AAR03881.1|Helicobacter_pylori_Ca52|+|21859..25455|cagA|HP0547|CagA
Length=1198

 Score = 1427 bits (5415),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 928/1210 (77%), Positives = 1069/1210 (89%), Gaps = 52/1210 (4%)

Query  1     MANETIDQTKNPDQTPSQTAFDSQQFINNLQVAFIKVDSAVASFDPDQKPIVDKNDRDNR  60
             M+NETI+Q     Q  +++AF++QQFINNLQVAF+KVD+AVAS+DPDQKPIVDKNDRDNR
Sbjct  17    MTNETINQ-----QPQTEAAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNR  71

Query  61    QAFNGISQLREEYANKAIKNPTKKNQYFSDFISKSNDLINKDNLIDTDSSTKSFQKFGTE  120
             QAF+GISQLREEY+NKAIKNPTKKNQYFSDFI KSNDLINKDNL+D +SSTKSFQKFG +
Sbjct  72    QAFEGISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNLVDVESSTKSFQKFGDQ  131

Query  121   RYQIFMNWVSHQKDPSKINTQKIRNFMENIVQPPISDDKEKAEFLRSAKQSFAGIIIGNQ  180
             RYQIF +WVSHQ+DPSKINT+ IRNFMENI+QPPI+DDKEKAEFL+SAKQ+FAGIIIGNQ
Sbjct  132   RYQIFTSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQAFAGIIIGNQ  191

Query  181   IRSDEKFMGVFEESLKEKQEAEKKGEPSG-DWLDIFLSFVFNKKQSSDLKETLNQESRPN  239
             IR+D+KFMGVF+ESLKE+QEAEK+G P+G DWLDIFLSFVFNKKQSSDLKETL+QE+ P+
Sbjct  192   IRTDQKFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSFVFNKKQSSDLKETLDQEPVPH  251

Query  240   VEQNIATTPTPIQGLPLEARDLLDERGDFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIH  299
             V+ +IATT T IQGLP EARDLLDERG+FSKFTLGDMEMLDVEGVADIDPNYKFNQLLIH
Sbjct  252   VQPDIATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIH  311

Query  300   NNALSSMLMGSHGNIKPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLKN  359
             NNALSS+LMGSH  I PEKVSLLYG+NGG  A+HDWNATVGYK+QQGNNVAT+IN H+KN
Sbjct  312   NNALSSVLMGSHNGIEPEKVSLLYGGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKN  371

Query  360   GSGLIIAGNENGINNPSFYLYKKDQLTGLEQALSQEEIQNKLGFMELLAQNNAKLDNLSK  419
             GSGL+IAG E+GINNPSFYLYK DQLTG ++ALSQEEIQNK+ FME+LAQNNAKLDNLS 
Sbjct  372   GSGLVIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKINFMEFLAQNNAKLDNLSE  431

Query  420   EEKEKFQTEIGNFQKDPKAYLDSLGNDRIAFVSKKDNKHLALVTEFGNGELSYTLKDYGK  479
              EKEKF+TEI +FQKD+KAYLD+LGNDRIAFVSKKD KH AL+TEFGNG+LSYTLKDYGK
Sbjct  432   KEKEKFRTEIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGK  491

Query  480   RQDRALDREIKTTLQGNLKDDGVMFVNYSNFKYTNASKSPNEGIGATNGVSHLEANFSKV  539
             + D+ALDRE + TLQG+LK+DGVMFV+YSNFKYTNASK+PN G+G TNGVSHLEA F KV
Sbjct  492   KADKALDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFDKV  551

Query  540   AVFNLPKLNGLAVSSFARRNLENKLIAKGFPPKEASKIIKDFLNSNKELLGKALNFNKAV  599
             AVFNLP LN LA++SF RRNLE+KL +KG++ +EA+K+IKDFLNSNKEL+GKALNFNKAV
Sbjct  552   AVFNLPDLNNLAITSFVRRNLEDKLATKGLSLQEANKLIKDFLNSNKELVGKALNFNKAV  611

Query  600   AEAKNTGNYGGVKKAQKDLEKSIRKRERLEKEITKQFESKSGNKNKMEAKAQANSQKDEI  659
             AEAKNTGNY+ VKKAQKDLEKS++KRE+LEKE++K++ESKSGNKNKMEAK+QANSQKDEI
Sbjct  612   AEAKNTGNYDEVKKAQKDLEKSLKKREHLEKEVAKKLESKSGNKNKMEAKSQANSQKDEI  671

Query  660   FKLINEGAYKEARIIAYAQNLKNIKRELSDKIENINKNLKDFGESFDALKSGKNKDFSKA  719
             F LIN  A ++AR IAYAQNLK IKRELSDK+ENINK+LKDF+ SFD +K+GKNKDFSKA
Sbjct  672   FALINKEANRDARAIAYAQNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKA  731

Query  720   EETLKALESSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSIKDVI  779
             EETLKAL +SVKDLGINPEWISKVENLN+ALNEFKNGKNKDFSKVTQAKSDLENSIKDVI
Sbjct  732   EETLKALKGSVKDLGINPEWISKVENLNTALNEFKNGKNKDFSKVTQAKSDLENSIKDVI  791

Query  780   INQEITDKVDNLNQAVSIAKATGDFSGLDQALAELKNF---------------NVGKNSD  824
             INQ ITDKVDNLNQAVSIAKATGDFSG++QALA+LKNF               N GKNS+
Sbjct  792   INQKITDKVDNLNQAVSIAKATGDFSGVEQALADLKNFSKGQLAQQAQKNEDFNTGKNSE  851

Query  825   LQKSvkngvngtlvgnglsvTEATTLTKKFSDIKKELNEKFANFNKNSNGLKNSAEPIYA  884
             + +SVKNGVNGTLVGNGLS +EATTL+K+FSDIKKEL+ K++N  +N+N      EPIYA
Sbjct  852   IYQSVKNGVNGTLVGNGLSKAEATTLSKNFSDIKKELEAKLGN-FNNNNNNGLKNEPIYA  910

Query  885   QVNKKKTGQVASPEESIYTQVAKEVNEKINRLNEKASASKGVGNFSGAGRLDSPEPIYAT  944
             +VNKKK+GQ ASPEE+IY+QVAK VN KI+RLN+ AS+  GVG+                
Sbjct  911   KVNKKKAGQAASPEEPIYAQVAKKVNAKIDRLNQIASGLGGVGQ----------------  954

Query  945   IDDLGGPFSLKKYAKVDDLSKVGARQSDSPEPIYATIDDLGGSSSLKRHAKVDDLTKVGF  1004
                 ++ F+LK+  KVDDLSKVG   S + EPIYATIDDLGGS +LKRH KVDDL+KVG+
Sbjct  955   ----AAGFPLKRHDKVDDLSKVGL--SANHEPIYATIDDLGGSFPLKRHDKVDDLSKVGL  1008

Query  1005  SREQELTQKIGNLNQAVSEAKAGFFGNLEQTMDGLKDSTKKNVVNLWVESAKNVPTSLQA  1064
             SR+QEL+QKI+NLNQAVSEAKAGFFGNLEQT+D LKDSTK N VNLW ESAK+VP+SL A
Sbjct  1009  SRNQELAQKIDNLNQAVSEAKAGFFGNLEQTIDNLKDSTKYNSVNLWAESAKKVPASLSA  1068

Query  1065  KLDNYATNSHTRINSNVQNGTINEKATGMLTQKNPEWLKLVNDKIVAHNVGSAPLSDYDK  1124
             KLDNYA NSHTRINSNV+NG+INEKATGMLTQKNPEWLKLVNDKIVAHNVGS PLS+YDK
Sbjct  1069  KLDNYAINSHTRINSNVKNGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDK  1128

Query  1125  IGFNQKNMKGYSDSFKFSTKLSNAVKNIKSGFEQLLTDCISAGSY----SPKKAEYGV--  1178
             IGFNQKNMK+YSDSFKFSTKL+NAVK+ KSGF ++L++ +S++SY    +  +AE G+  
Sbjct  1129  IGFNQKNMKDYSDSFKFSTKLNNAVKDTKSGFTRFLANAFSTASYYYFLAGENAEHGIKN  1188

Query  1179  --TKSGFQKS  1186
               TK+GFQKS
Sbjct  1189  VNTKGGFQKS  1198

28) cagA in NC_017366


> AY330637|20|G20|37811806|AAR03881.1|Helicobacter_pylori_Ca52|+|21859..25455|cagA|HP0547|CagA
Length=1198

 Score = 1421 bits (5392),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 923/1198 (78%), Positives = 1063/1198 (89%), Gaps = 41/1198 (3%)

Query  1     MTNETIDQTTTPDQTGFVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDKDNRQAFE  60
             MTNETI+Q    + ++F PQ+FINNLQVAF+KVDNAVAS+DPDQKPIVDKND+DNRQAFE
Sbjct  17    MTNETINQQPQTE-AAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNRQAFE  75

Query  61    KISQLREEYankaiknpakknQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQRYQI  120
              ISQLREEY+NKAIKNP+KKNQYFSDFI+KSNDLINKDNL+ V+SS  SF+KFGDQRYQI
Sbjct  76    GISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNLVDVESSTKSFQKFGDQRYQI  135

Query  121   FTSWVSLQKDPSKINTQQIRNFMENVIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSD  180
             FTSWVS Q+DPSKINT+ IRNFMEN+IQPPI+DDKEKAEFL+SAKQ+FAGIIIGNQIR+D
Sbjct  136   FTSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQAFAGIIIGNQIRTD  195

Query  181   EKFMGVFDESLKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPDFEQN  240
             +KFMGVFDESLK RQEAEKN+ P+GGDWLDIFLSFVFNKKQSSDLKETL+QEP P+ + +
Sbjct  196   QKFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSFVFNKKQSSDLKETLDQEPVPHVQPD  255

Query  241   LATTTTDIQGLPPEARDLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIHNNAL  300
             +ATTTTDIQGLPPEARDLLDERGNF KFTLGD+EMLDVEGVAD DPNYKFNQLLIHNNAL
Sbjct  256   IATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNAL  315

Query  301   SSMLMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLNNGSGL  360
             SS+LMGSH+ IEPEKVSLLYG+NGG  A+HDWNATVGYK+QQGNNVAT+IN H++NGSGL
Sbjct  316   SSVLMGSHNGIEPEKVSLLYGGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKNGSGL  375

Query  361   IIAGNEDGIKNPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSEKEKE  420
             +IAG E GI+NPSFYLYKEDQLTG ++ALSQEEIQNK++FMEFLAQNNAKLDNLSEKEKE
Sbjct  376   VIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKINFMEFLAQNNAKLDNLSEKEKE  435

Query  421   KFQTEIENFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGELSYTLKDYGKKQDK  480
             KF+TEIE+FQKD KAYLDALGND+IAFVSKKD KH AL+TEFGNG+LSYTLKDYGKK DK
Sbjct  436   KFRTEIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGKKADK  495

Query  481   ALDGETKTTLQGSLKYDGVMFVNYSNFKYTNASKSPNKGLGTTNGVSHLEANFSKVAVFN  540
             ALD E + TLQGSLK DGVMFV+YSNFKYTNASK+PNKG+G TNGVSHLEA F KVAVFN
Sbjct  496   ALDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFDKVAVFN  555

Query  541   LPNLNNLAITNYIRRDLEDKLWAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAVAEAK  600
             LP+LNNLAIT+++RR+LEDKL +KGLS QEANKLIKDFLNSNKE+VGK  NFNKAVAEAK
Sbjct  556   LPDLNNLAITSFVRRNLEDKLATKGLSLQEANKLIKDFLNSNKELVGKALNFNKAVAEAK  615

Query  601   NTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKIFALI  660
             NTGNYDEVKKAQKDLEKSL+KREHLEKEVAKKLES+++NKN+MEAK+QANSQKD IFALI
Sbjct  616   NTGNYDEVKKAQKDLEKSLKKREHLEKEVAKKLESKSGNKNKMEAKSQANSQKDEIFALI  675

Query  661   SQEASKEARVATFDPNLKGVRSELSDKLENINKNLKDFGKSFDELKSGKNNDFSKAEETL  720
             ++EA+++AR  ++  NLKG++ ELSDKLENINK+LKDF+KSFDE+K+GKN+DFSKAEETL
Sbjct  676   NKEANRDARAIAYAQNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKAEETL  735

Query  721   KALKDSVKDLGINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVIINQK  780
             KALK+SVKDLGINPEWISK+ENLN+ALN+FKNGKNKDFSKVTQAKSDLENSIKDVIINQK
Sbjct  736   KALKGSVKDLGINPEWISKVENLNTALNEFKNGKNKDFSKVTQAKSDLENSIKDVIINQK  795

Query  781   ITDKVDNLNQAVSEIKLTGDFSKVEQALAELKNLS-------------LDLGKNSDLQKS  827
             ITDKVDNLNQAVS  K TGDFS VEQALA+LKN+S             ++ GKNS++ +S
Sbjct  796   ITDKVDNLNQAVSIAKATGDFSGVEQALADLKNFSKGQLAQQAQKNEDFNTGKNSEIYQS  855

Query  828   VKNGVNGTLVSNGLSKTEATTLTKNFSDIRKElneklfgnsnnnnnglknnTEPIYAQVN  887
             VKNGVNGTLV+NGLSK+EATTL+KNFSDI+KE        + NNNN    + EPIYA+VN
Sbjct  856   VKNGVNGTLVGNGLSKAEATTLSKNFSDIKKE--LEAKLGNFNNNNNNGLKNEPIYAKVN  913

Query  888   KKKTGQATSPEEPIYAQVAKKVSAKIDQLNEATSAIN----------RKIDRINKIasag  937
             KKK+GQA+SPEEPIYAQVAKKV+AKID+LN+ +S++           ++ D+++ +    
Sbjct  914   KKKAGQAASPEEPIYAQVAKKVNAKIDRLNQIASGLGGVGQAAGFPLKRHDKVDDL----  969

Query  938   kgvggfsgagrsasPEPIYATIDFDEANQAGFPLRRSAAVNDLSKVGLSREQELTRRIGD  997
                   S  G SA+ EPIYATID      ++FPL+R   V+DLSKVGLSR+QEL+++I++
Sbjct  970   ------SKVGLSANHEPIYATID---DLGGSFPLKRHDKVDDLSKVGLSRNQELAQKIDN  1020

Query  998   LSQAVSEAKTGHFGNLEQKIDELKDSTKKNALKLWVESAKQVPTSLQAKLDNYATNSHTR  1057
             L+QAVSEAK+G FGNLEQ ID+LKDSTK N+++LW ESAK+VP+SL AKLDNYA NSHTR
Sbjct  1021  LNQAVSEAKAGFFGNLEQTIDNLKDSTKYNSVNLWAESAKKVPASLSAKLDNYAINSHTR  1080

Query  1058  INSNVQSGTINEKATGMLTQKNPEWLKLVNDKIVAHNVGSAPLSAYDKIGFNQKNMKDYS  1117
             INSNV++G+INEKATGMLTQKNPEWLKLVNDKIVAHNVGS PLS YDKIGFNQKNMKDYS
Sbjct  1081  INSNVKNGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYS  1140

Query  1118  DSFKFSTKLNNAVKDIKSSFVQFLTNTFSTGSYS--LMKANVEHGVKNTNTKGGFQKS  1173
             DSFKFSTKLNNAVKD KS+F +FL+N+FST+SY   L   N EHG+KN NTKGGFQKS
Sbjct  1141  DSFKFSTKLNNAVKDTKSGFTRFLANAFSTASYYYFLAGENAEHGIKNVNTKGGFQKS  1198

29) cagA in NC_017365


> AY330637|20|G20|37811806|AAR03881.1|Helicobacter_pylori_Ca52|+|21859..25455|cagA|HP0547|CagA
Length=1198

 Score = 1418 bits (5383),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 937/1200 (79%), Positives = 1068/1200 (89%), Gaps = 44/1200 (3%)

Query  1     MTNETIDQTITPDQTPNQTDFVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDRDNR  60
             MTNETI+Q     Q   ++ F PQ+FINNLQVAF+KVDNAVAS+DPDQKPIVDKNDRDNR
Sbjct  17    MTNETINQ-----QPQTEAAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNR  71

Query  61    QAFEKISQLREEYANKAIKNPTKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQ  120
             QAFE ISQLREEY+NKAIKNPTKKNQYFSDFI+KSNDLINKDNL+ V+SS  SF+KFGDQ
Sbjct  72    QAFEGISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNLVDVESSTKSFQKFGDQ  131

Query  121   RYQIFTSWVSLQKDPSKINTQQIRNFMENIIQPPISDDKEKAEFLRSAKQSFAGIIIGNQ  180
             RYQIFTSWVS Q+DPSKINT+ IRNFMENIIQPPI+DDKEKAEFL+SAKQ+FAGIIIGNQ
Sbjct  132   RYQIFTSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQAFAGIIIGNQ  191

Query  181   IRSDEKFMGVFDESLKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPD  240
             IR+D+KFMGVFDESLK RQEAEKN+ P+GGDWLDIFLSFVFNKKQSSDLKETL+QEP P+
Sbjct  192   IRTDQKFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSFVFNKKQSSDLKETLDQEPVPH  251

Query  241   FEQNLATTTTDIQGLPPESRDLLDERGNFFKFTLGDMEMLDVEGVADKDPNYKFNQLLIH  300
              + ++ATTTTDIQGLPPE+RDLLDERGNF KFTLGDMEMLDVEGVAD DPNYKFNQLLIH
Sbjct  252   VQPDIATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIH  311

Query  301   NNALSSVLMGGHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLRN  360
             NNALSSVLMG+H+ IEPEKVSLLYG+NGG  A+HDWNATVGYK+QQGNNVAT+IN H++N
Sbjct  312   NNALSSVLMGSHNGIEPEKVSLLYGGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKN  371

Query  361   GSGLVIVGNEDGIKNPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSE  420
             GSGLVI G E GI+NPSFYLYKEDQLTG ++ALSQEEIQNK++FMEFLAQNNAKLDNLSE
Sbjct  372   GSGLVIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKINFMEFLAQNNAKLDNLSE  431

Query  421   KEKEKFQTEIEDFQKDRKAYLDALGNDRIAFVSKKDPKHLALVTEFGNGEVSYTLKDYGK  480
             KEKEKF+TEIEDFQKD KAYLDALGNDRIAFVSKKD KH AL+TEFGNG++SYTLKDYGK
Sbjct  432   KEKEKFRTEIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGK  491

Query  481   KQDKALDGETKTTLQGSLKYDGVMFVNYSNFKYTNASKSPDKGVGTTNGVSHLEANFSKV  540
             K DKALD E + TLQGSLK DGVMFV+YSNFKYTNASK+P+KGVG TNGVSHLEA F KV
Sbjct  492   KADKALDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFDKV  551

Query  541   AVFNLPNLNNLAITNYIRRDLEDKLLAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAV  600
             AVFNLP+LNNLAIT+++RR+LEDKL +KGLS QEANKLIKDFLNSNKE+VGK  NFNKAV
Sbjct  552   AVFNLPDLNNLAITSFVRRNLEDKLATKGLSLQEANKLIKDFLNSNKELVGKALNFNKAV  611

Query  601   AEAKNTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKI  660
             AEAKNTGNYDEVKKAQKDLEKSL+KREHLEKEVAKKLES+++NKN+MEAK+QANSQKD I
Sbjct  612   AEAKNTGNYDEVKKAQKDLEKSLKKREHLEKEVAKKLESKSGNKNKMEAKSQANSQKDEI  671

Query  661   FALINQEASKEARAAAFDPNLKGIRSELSDKLENINKNLKDFGKSVDELKNGKNNDFSKA  720
             FALIN+EA+++ARA A+  NLKGI+ ELSDKLENINK+LKDF+KS DE+KNGKN+DFSKA
Sbjct  672   FALINKEANRDARAIAYAQNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKA  731

Query  721   EETLKALKDSVKDLGINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVI  780
             EETLKALK+SVKDLGINPEWISK+ENLN+ALN+FKNGKNKDFSKVTQAKSDLENSIKDVI
Sbjct  732   EETLKALKGSVKDLGINPEWISKVENLNTALNEFKNGKNKDFSKVTQAKSDLENSIKDVI  791

Query  781   INQKITDKVDNLNQAVSETKLTGDFSKVEQALAELKSLS-------------LDLGKNSD  827
             INQKITDKVDNLNQAVS +K TGDFS VEQALA+LK++S             ++ GKNS+
Sbjct  792   INQKITDKVDNLNQAVSIAKATGDFSGVEQALADLKNFSKGQLAQQAQKNEDFNTGKNSE  851

Query  828   LQKSVKngvngtlvgnglSKTEATTLTKNFSDIRKELneklfgnsnnnnnglknePIYAQ  887
             + +SVKNGVNGTLVGNGLSK+EATTL+KNFSDI+KEL+ KL   +NNNNNGLKNEPIYA+
Sbjct  852   IYQSVKNGVNGTLVGNGLSKAEATTLSKNFSDIKKELEAKLGNFNNNNNNGLKNEPIYAK  911

Query  888   VNKKKAGQVASPEEPIYAQVAKKVSAKIDQLNEATSAIN----------RKIDRINKIas  937
             VNKKKAGQ ASPEEPIYAQVAKKV+AKID+LN+ +S++           ++ D+++ +  
Sbjct  912   VNKKKAGQAASPEEPIYAQVAKKVNAKIDRLNQIASGLGGVGQAAGFPLKRHDKVDDL--  969

Query  938   agkgvggfsgagqsasPEPIYATIDFDDANQAGFPLRRSAAVNDLSKVGLSREQELTRRI  997
                     S  G SA+ EPIYATI   D   ++FPL+R   V+DLSKVGLSR+QEL+++I
Sbjct  970   --------SKVGLSANHEPIYATI---DDLGGSFPLKRHDKVDDLSKVGLSRNQELAQKI  1018

Query  998   GDLNQAVSEAKTGRFDNLEQKIDELKDSTKKNALKLWVESAKQVPIGLQAKLDNYATNSH  1057
             ++LNQAVSEAK+G F+NLEQ ID+LKDSTK N+++LW ESAK+VP +L AKLDNYA NSH
Sbjct  1019  DNLNQAVSEAKAGFFGNLEQTIDNLKDSTKYNSVNLWAESAKKVPASLSAKLDNYAINSH  1078

Query  1058  TRINSNVQSGTINEKATGMLTQRNPEWLKLVNDKIVAHNVGSAHLSEYDKIGFNQKNMKD  1117
             TRINSNV++G+INEKATGMLTQ+NPEWLKLVNDKIVAHNVGS  LSEYDKIGFNQKNMKD
Sbjct  1079  TRINSNVKNGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKD  1138

Query  1118  YSDSFKFSTKLNNAVKDIKSSFVQFLTNTFSTGSYS--LMKANVEHGVKN-TTKSGFQKS  1174
             YSDSFKFSTKLNNAVKD KS+F +FL+N+FST+SY   L   N EHG+KN  TK+GFQKS
Sbjct  1139  YSDSFKFSTKLNNAVKDTKSGFTRFLANAFSTASYYYFLAGENAEHGIKNVNTKGGFQKS  1198

30) HMPREF0462_0869 in NC_017375


> AY330637|20|G20|37811806|AAR03881.1|Helicobacter_pylori_Ca52|+|21859..25455|cagA|HP0547|CagA
Length=1198

 Score = 1415 bits (5371),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 925/1193 (78%), Positives = 1061/1193 (89%), Gaps = 28/1193 (2%)

Query  1     MTNETIDQTITPDQTPNQTDFVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDRDNR  60
             MTNETI+Q     Q   ++ F PQ+FINNLQVAF+KVDNAVAS+DPDQKPIVDKNDRDNR
Sbjct  17    MTNETINQ-----QPQTEAAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNR  71

Query  61    QAFEKISQLREEYANKAIKNPTKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQ  120
             QAFE ISQLREEY+NKAIKNPTKKNQYFSDFI+KSNDLINKDNL+ V+SS  SF+KFGDQ
Sbjct  72    QAFEGISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNLVDVESSTKSFQKFGDQ  131

Query  121   RYQIFTSWVSLQKDPSKINTQQIQNFMENIIQPPISDDKEKAEFLRSAKQSFAGIIIGNQ  180
             RYQIFTSWVS Q+DPSKINT+ I+NFMENIIQPPI+DDKEKAEFL+SAKQ+FAGIIIGNQ
Sbjct  132   RYQIFTSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQAFAGIIIGNQ  191

Query  181   IRSDEKFMGVFDESLKARQEAEKNAEPAGEDWLDIFLSFVFNKKQSSDLKETLNQEPRPD  240
             IR+D+KFMGVFDESLK RQEAEKN+ P+G DWLDIFLSFVFNKKQSSDLKETL+QEP P+
Sbjct  192   IRTDQKFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSFVFNKKQSSDLKETLDQEPVPH  251

Query  241   FEQNLATTTTDIQGLPPEARDLLDERGNFSKFTLGDVEMLDVEGVADKDPNYKFNQLLIH  300
              + ++ATTTTDIQGLPPEARDLLDERGNFSKFTLGD+EMLDVEGVAD DPNYKFNQLLIH
Sbjct  252   VQPDIATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIH  311

Query  301   NNALSSVLMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKDQQGSNVATLINAHLNN  360
             NNALSSVLMGSH+ IEPEKVSLLYG+NGG  A+HDWNATVGYKDQQG+NVAT+IN H++N
Sbjct  312   NNALSSVLMGSHNGIEPEKVSLLYGGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKN  371

Query  361   GSGLIIAGNEDGIKNPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSK  420
             GSGL+IAG E GI+NPSFYLYKEDQLTG ++ALSQEEIQNK++FMEFLAQNNAKLDNLS 
Sbjct  372   GSGLVIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKINFMEFLAQNNAKLDNLSE  431

Query  421   EEKEKFQTEIENFQKDRKAYLDALGNDHIAFVSKKDPNHLALVTEFGNGELSYTLKDYGK  480
              EKEKF+TEIE+FQKD KAYLDALGND+IAFVSKKD +H AL+TEFGNG+LSYTLKDYGK
Sbjct  432   KEKEKFRTEIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGK  491

Query  481   KQDKALDGETKTTLQGSLKYDGVMFVNYSNFKYTNASKSPNKGLGATNGVSHLEANFSKV  540
             K DKALD E + TLQGSLK DGVMFV+YSNFKYTNASK+PNKG+G TNGVSHLEA F KV
Sbjct  492   KADKALDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFDKV  551

Query  541   AVFNLPNLNNLAITNYIRRDLEDKLLAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAV  600
             AVFNLP+LNNLAIT+++RR+LEDKL +KGLS QEANKLIKDFLNSNKE+VGK  NFNKAV
Sbjct  552   AVFNLPDLNNLAITSFVRRNLEDKLATKGLSLQEANKLIKDFLNSNKELVGKALNFNKAV  611

Query  601   AEAKNTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKI  660
             AEAKNTGNYDEVKKAQKDLEKSL+KREHLEKEVAKKLES+++NKN+MEAK+QANSQKD I
Sbjct  612   AEAKNTGNYDEVKKAQKDLEKSLKKREHLEKEVAKKLESKSGNKNKMEAKSQANSQKDEI  671

Query  661   FALINKEASKEARAAAFDPNLKGIRIELSDKLENINKNLKDFGKSFDELKNGKNNDFSKA  720
             FALINKEA+++ARA A+  NLKGI+ ELSDKLENINK+LKDF+KSFDE+KNGKN+DFSKA
Sbjct  672   FALINKEANRDARAIAYAQNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKA  731

Query  721   EETLKALKDSVKDLGINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVI  780
             EETLKALK+SVKDLGINPEWISK+ENLN+ALN+FKNGKNKDFSKVTQAKSDLENSIKDVI
Sbjct  732   EETLKALKGSVKDLGINPEWISKVENLNTALNEFKNGKNKDFSKVTQAKSDLENSIKDVI  791

Query  781   INQKITDKVDNLNQAVSETKLTGDFSKVEQALAELKNLS-------------LDFGKNSD  827
             INQKITDKVDNLNQAVS +K TGDFS VEQALA+LKN+S             ++ GKNS+
Sbjct  792   INQKITDKVDNLNQAVSIAKATGDFSGVEQALADLKNFSKGQLAQQAQKNEDFNTGKNSE  851

Query  828   LQKSVKngvngtlvgnglSKTEATTLTKNFSEIRKElneklfgnsnnnnnglknnTEPIY  887
             + +SVKNGVNGTLVGNGLSK+EATTL+KNFS+I+KE        + NNNN    + EPIY
Sbjct  852   IYQSVKNGVNGTLVGNGLSKAEATTLSKNFSDIKKE--LEAKLGNFNNNNNNGLKNEPIY  909

Query  888   AQVNKKKTGQATSPEEPIYAQVAKKVSAKIDQLNEATLAINRKIDRINKIA-SAGKGVGN  946
             A+VNKKK+GQA+SPEEPIYAQVAKKV+AKID+LN+ + ++   +++   ++      V++
Sbjct  910   AKVNKKKAGQAASPEEPIYAQVAKKVNAKIDRLNQIASGLG-GVGQAAGFPLKRHDKVDD  968

Query  947   FSGAERSASPEPIYATIDFDEANQAGFPLRRSAAVNDLSKVGLSREQELTRRIGDLNQAV  1006
             +S    SA+ EPIYATID      ++FPL+R   V+DLSKVGLSR+QEL+++I++LNQAV
Sbjct  969   LSKVGLSANHEPIYATID---DLGGSFPLKRHDKVDDLSKVGLSRNQELAQKIDNLNQAV  1025

Query  1007  SKAKTGYFDNLEQKIDELKDSTKKNALKLWVESAKQVPAGLQAKLDNYATNSHTRINSNV  1066
             S AK+G+F+NLEQ ID+LKDSTK N+++LW ESAK+VPA+L AKLDNYA NSHTRINSNV
Sbjct  1026  SEAKAGFFGNLEQTIDNLKDSTKYNSVNLWAESAKKVPASLSAKLDNYAINSHTRINSNV  1085

Query  1067  QTGTINEKATGMLTQKNPEWLKLVNDKIVAHNVGSAHLSEYDKIGFNQKNMKDYSDSFKF  1126
             + G+INEKATGMLTQKNPEWLKLVNDKIVAHNVGS  LSEYDKIGFNQKNMKDYSDSFKF
Sbjct  1086  KNGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKF  1145

Query  1127  STKLNNAVKDIKSSFVQFLTNTFSTGSYS--LMKANVEHGVKN-TTKSGFQKS  1176
             STKLNNAVKD KS+F +FL+N+FST+SY   L   N EHG+KN  TK+GFQKS
Sbjct  1146  STKLNNAVKDTKSGFTRFLANAFSTASYYYFLAGENAEHGIKNVNTKGGFQKS  1198

31) HPPN120_02680 in NC_017378


> AY330637|20|G20|37811806|AAR03881.1|Helicobacter_pylori_Ca52|+|21859..25455|cagA|HP0547|CagA
Length=1198

 Score = 1411 bits (5354),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 933/1194 (79%), Positives = 1061/1194 (89%), Gaps = 34/1194 (2%)

Query  1     MANETINQTEKLDQTPNQTAFDPQQFINNLQVAFIKVDSAVASFDPDQKPIVDKNDRDNR  60
             M+NETINQ     Q   ++AF+PQQFINNLQVAF+KVD+AVAS+DPDQKPIVDKNDRDNR
Sbjct  17    MTNETINQ-----QPQTEAAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNR  71

Query  61    QAFNGISQLREEYANKAIKNPTKKNQYFSDFIDKSNDLINKDNLIDTDSSTKSFQKFGTE  120
             QAF+GISQLREEY+NKAIKNPTKKNQYFSDFIDKSNDLINKDNL+D +SSTKSFQKFG +
Sbjct  72    QAFEGISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNLVDVESSTKSFQKFGDQ  131

Query  121   RYQIFMNWVSHQKDPSKINTQKIRNFMENIIQPPISDDKEKAEFLRSAKQSFAGIIIGNQ  180
             RYQIF +WVSHQ+DPSKINT+ IRNFMENIIQPPI+DDKEKAEFL+SAKQ+FAGIIIGNQ
Sbjct  132   RYQIFTSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQAFAGIIIGNQ  191

Query  181   IRSDEKFMGIFDESLKERQEAEKNGEPASGDWLDIFLSFVFGKKQSSDLKETLNQEPRPN  240
             IR+D+KFMG+FDESLKERQEAEKNG P++GDWLDIFLSFVF KKQSSDLKETL+QEP P+
Sbjct  192   IRTDQKFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSFVFNKKQSSDLKETLDQEPVPH  251

Query  241   VEQNIAATTTPIQGLPLEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIH  300
             V+ +IA+TTT IQGLP EARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIH
Sbjct  252   VQPDIATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIH  311

Query  301   NNALSSMLMGSRSNIELEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLKN  360
             NNALSS+LMGS++ IE EKVSLLYG+NGG  A+HDWNATVGYK+QQGNNVAT+IN H+KN
Sbjct  312   NNALSSVLMGSHNGIEPEKVSLLYGGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKN  371

Query  361   GSGLVIAGNENGINNPSFYLYKEDQLTGLKKALSQEEIQNKLGFMELLAQNNAKLDNLSK  420
             GSGLVIAG E+GINNPSFYLYKEDQLTG ++ALSQEEIQNK+ FME+LAQNNAKLDNLS 
Sbjct  372   GSGLVIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKINFMEFLAQNNAKLDNLSE  431

Query  421   EEKEKFQTEIGNFQKDPKAYLDSLGKDRIAFVSKKDQKHLALVTEFGNGELSYTLKDYGK  480
              EKEKF+TEI +FQKD+KAYLD+LG+DRIAFVSKKD KH AL+TEFGNG+LSYTLKDYGK
Sbjct  432   KEKEKFRTEIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGK  491

Query  481   KQDRALDRETKTTLQGNLKHDGVMFVNYSNFKYTNASKSPNEGIGATNGVSHLEANFSKV  540
             K D+ALDRE + TLQG+LKHDGVMFV+YSNFKYTNASK+PN G+G TNGVSHLEA F KV
Sbjct  492   KADKALDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFDKV  551

Query  541   AVFDLPDLNGLAISGFVRRNLEDKLIAKGLPPKEANKIIKDFLNSNKELVGKALNFNKAV  600
             AVF+LPDLN LAI++FVRRNLEDKL +KGL+ +EANK+IKDFLNSNKELVGKALNFNKAV
Sbjct  552   AVFNLPDLNNLAITSFVRRNLEDKLATKGLSLQEANKLIKDFLNSNKELVGKALNFNKAV  611

Query  601   AEAKNTGNYDGVKKAQKDLEKSIRKRERLEKEITkkfenkssnknkmeakaQANSQKDEV  660
             AEAKNTGNYD VKKAQKDLEKS++KRE+LEKE++KK+E+KS+NKNKMEAK+QANSQKDE+
Sbjct  612   AEAKNTGNYDEVKKAQKDLEKSLKKREHLEKEVAKKLESKSGNKNKMEAKSQANSQKDEI  671

Query  661   FKLINEGAHKEARIAAYAQNLKGIRRELFDKIENTNKNLKDFGESFDALKSGKNKDFSKA  720
             F LIN  A+++AR  AYAQNLKGI+REL DK+EN NK+LKDF+ SFD +K+GKNKDFSKA
Sbjct  672   FALINKEANRDARAIAYAQNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKA  731

Query  721   EETLKALQSSVKDLGINPEWTSKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSIKDVI  780
             EETLKAL++SVKDLGINPEW SKVENLN+ALNEFKNGKNKDFSKVTQAKSDLENSIKDVI
Sbjct  732   EETLKALKGSVKDLGINPEWISKVENLNTALNEFKNGKNKDFSKVTQAKSDLENSIKDVI  791

Query  781   INQEITDKVDNLNQAVLMAKAIGDFSGVEQALAELKNFSTD------QKNESFNVQK---  831
             INQ ITDKVDNLNQAV +AKA GDFSGVEQALA+LKNFS +      QKNE FN  K   
Sbjct  792   INQKITDKVDNLNQAVSIAKATGDFSGVEQALADLKNFSKGQLAQQAQKNEDFNTGKNSE  851

Query  832   ---SVKngvngtlvgnglSETEATTLTKKISDIRKelnekfansnnnnnglknsaEPIYA  888
                SVKNGVNGTLVGNGLS +EATTL+K++SDI+K   E    + NNNN      EPIYA
Sbjct  852   IYQSVKNGVNGTLVGNGLSKAEATTLSKNFSDIKK-ELEAKLGNFNNNNNNGLKNEPIYA  910

Query  889   KVNKKKTGQVASPEESIYDQLAKEVKAKIDKLNKIASASKSDSSEPIYA-----TIDDLG  943
             KVNKKK+GQ ASPEE+IY Q+AK V+AKID+LN+IAS+  + +  + ++      +DD  
Sbjct  911   KVNKKKAGQAASPEEPIYAQVAKKVNAKIDRLNQIASGLGGVGQAAGFPLKRHDKVDD--  968

Query  944   GPFPLSRLGRSDSSEPIYATIDDLGGP-SLKRYAKVDDLSKVGLSRDQKLTQKIGNLDQA  1002
                 LS++G S + EPIYATIDDLGG+ +LKR  KVDDLSKVGLSR+Q L+QKI+NL+QA
Sbjct  969   ----LSKVGLSANHEPIYATIDDLGGSFPLKRHDKVDDLSKVGLSRNQELAQKIDNLNQA  1024

Query  1003  VSEAKAGFFGNLEQTIDRLKDSTKKNVVNLWVESAKKVPAILQEKLDNYATNSHTRINSN  1062
             VSEAKAGFFGNLEQTID LKDSTK N VNLW ESAKKVPA L  KLDNYA NSHTRINSN
Sbjct  1025  VSEAKAGFFGNLEQTIDNLKDSTKYNSVNLWAESAKKVPASLSAKLDNYAINSHTRINSN  1084

Query  1063  VKNGTINEKATGMLTQKNPEWLKLVNDKIVAHNVGSTPLSDYDKIGFNQKNMKGYSDSFK  1122
             VKNG+INEKATGMLTQKNPEWLKLVNDKIVAHNVGS PLS+YDKIGFNQKNMK+YSDSFK
Sbjct  1085  VKNGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFK  1144

Query  1123  FSTKLNNAVKNIKSGFEQFLTDCISAGSY----NPIKAEHGVKNINTKSGFQKS  1172
             FSTKLNNAVK+ KSGF +FL++ +S++SY       +AEHG+KN+NTK+GFQKS
Sbjct  1145  FSTKLNNAVKDTKSGFTRFLANAFSTASYYYFLAGENAEHGIKNVNTKGGFQKS  1198

32) K751_03370 in NC_021218


> AY330637|20|G20|37811806|AAR03881.1|Helicobacter_pylori_Ca52|+|21859..25455|cagA|HP0547|CagA
Length=1198

 Score = 1405 bits (5331),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 919/1182 (78%), Positives = 1053/1182 (90%), Gaps = 42/1182 (3%)

Query  21    FVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDRDNRQAFEKISQLREEYankaikn  80
             F PQ+FINNLQVAF+KVDNAVAS+DPDQKPIVDKNDRDNRQAFE ISQLREEY+NKAIKN
Sbjct  32    FNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNRQAFEGISQLREEYSNKAIKN  91

Query  81    pakknQYFSDFINKSNDLINKDNLIAVDSSVESFKKFGDQRYQIFTSWVSLQKDPSKINT  140
             P+KKNQYFSDFI+KSNDLINKDNL+ V+SS  SF+KFGDQRYQIFTSWVS Q+DPSKINT
Sbjct  92    PTKKNQYFSDFIDKSNDLINKDNLVDVESSTKSFQKFGDQRYQIFTSWVSHQNDPSKINT  151

Query  141   QQIQNFMENIIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSDQKFMGVFDESLKERQE  200
             + I+NFMENIIQPPI+DDKEKAEFL+SAKQ+FAGIIIGNQIR+DQKFMGVFDESLKERQE
Sbjct  152   RSIRNFMENIIQPPIPDDKEKAEFLKSAKQAFAGIIIGNQIRTDQKFMGVFDESLKERQE  211

Query  201   AEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLHQEPRPDFEQNLATTTTNIQGLPPEAR  260
             AEKN+ P+GGDWLDIFLSFVFNKKQSSDLKETL+QEP P+ + ++ATTTT+IQGLPPEAR
Sbjct  212   AEKNGGPTGGDWLDIFLSFVFNKKQSSDLKETLDQEPVPHVQPDIATTTTDIQGLPPEAR  271

Query  261   DLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIHNNALSSVLMGSHSNIEPEKV  320
             DLLDERGNF KFTLGD+EMLDVEGVAD DPNYKFNQLLIHNNALSSVLMGSH+ IEPEKV
Sbjct  272   DLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALSSVLMGSHNGIEPEKV  331

Query  321   SLLYGDNGGPEARHDWNATVGYKDQQGNNVATLINAHLNNGSGLIIAGNENGIKNPSFYL  380
             SLLYG+NGG  A+HDWNATVGYKDQQGNNVAT+IN H++NGSGL+IAG E+GI+NPSFYL
Sbjct  332   SLLYGGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKNGSGLVIAGGEKGINNPSFYL  391

Query  381   YKEDQLTGLKQAMSQEEIQNKVDFMEFLAKNNAKLDNLSKEEKEKFQTEIGNFQKDRKAY  440
             YKEDQLTG ++A+SQEEIQNK++FMEFLA+NNAKLDNLS  EKEKF+TEI +FQKD KAY
Sbjct  392   YKEDQLTGSQRALSQEEIQNKINFMEFLAQNNAKLDNLSEKEKEKFRTEIEDFQKDSKAY  451

Query  441   LDALGNDHIAFVSKKDSKHLALVTEFGNGEVSYTLKDYGKKQDKALDGETKTTLQGSLKY  500
             LDALGND+IAFVSKKD+KH AL+TEFGNG++SYTLKDYGKK DKALD E + TLQGSLK 
Sbjct  452   LDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGKKADKALDREKNVTLQGSLKH  511

Query  501   DGVMFVNYSNFKYTNASKSPDKGVGTTNGVSHLEANFSKVAVFNLPNLNNLAITNYIRRD  560
             DGVMFV+YSNFKYTNASK+P+KGVG TNGVSHLEA F KVAVFNLP+LNNLAIT+++RR+
Sbjct  512   DGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFDKVAVFNLPDLNNLAITSFVRRN  571

Query  561   LEDKLLAKGLSPQEANKLIKDFLNSNKELVGKVSNFNKAVAEAKNTGNYDEVKKAQKDLE  620
             LEDKL +KGLS QEANKLIKDFLNSNKELVGK  NFNKAVAEAKNTGNYDEVKKAQKDLE
Sbjct  572   LEDKLATKGLSLQEANKLIKDFLNSNKELVGKALNFNKAVAEAKNTGNYDEVKKAQKDLE  631

Query  621   KSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKIFALINKEASKEARAAAFDPN  680
             KSL+KREHLEKEVAKKLES+++NKN+MEAK+QANSQKD IFALINKEA+++ARA A+  N
Sbjct  632   KSLKKREHLEKEVAKKLESKSGNKNKMEAKSQANSQKDEIFALINKEANRDARAIAYAQN  691

Query  681   LKGVRSELSDKLENINKNLKDFGKSFDELKNGKNNDFSKAEETLKALKDSVKDLGINPEW  740
             LKG++ ELSDKLENINK+LKDF+KSFDE+KNGKN+DFSKAEETLKALK+SVKDLGINPEW
Sbjct  692   LKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKAEETLKALKGSVKDLGINPEW  751

Query  741   ISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVIINQKITDKVDNLNQAVSETK  800
             ISK+ENLN+ALN+FKNGKNKDFSKVTQAKSDLENSIKDVIINQKITDKVDNLNQAVS +K
Sbjct  752   ISKVENLNTALNEFKNGKNKDFSKVTQAKSDLENSIKDVIINQKITDKVDNLNQAVSIAK  811

Query  801   LTGDFSKVEQALAELKSLS-------------LDLGKNSDL-QSVKNSVNGTLVGNGLSK  846
              TGDFS VEQALA+LK++S             ++ GKNS++ QSVKN+VNGTLVGNGLSK
Sbjct  812   ATGDFSGVEQALADLKNFSKGQLAQQAQKNEDFNTGKNSEIYQSVKNGVNGTLVGNGLSK  871

Query  847   TEATTLTKNFSDIRKElneklfgnsnnnnnglknnTEPIYAQVNKKKAGQATSPEEPIYA  906
             +EATTL+KNFSDI+KE        + NNNN    + EPIYA+VNKKKAGQA+SPEEPIYA
Sbjct  872   AEATTLSKNFSDIKKE--LEAKLGNFNNNNNNGLKNEPIYAKVNKKKAGQAASPEEPIYA  929

Query  907   QVAKKVSAKIDQLNEATSAIN----------RKIDRINKIasagkgvggfsgagrsasPE  956
             QVAKKV+AKID+LN+ +S++           ++ D+++ +          S  G SA+ E
Sbjct  930   QVAKKVNAKIDRLNQIASGLGGVGQAAGFPLKRHDKVDDL----------SKVGLSANHE  979

Query  957   PIYATIDFDEANQAGFPLRRSAAVNDLSKVGLSREQELTRRIGDLNQAVSEAKTGHFGNL  1016
             PIYATID      ++FPL+R   V+DLSKVGLSR+QEL+++I++LNQAVSEAK+G FGNL
Sbjct  980   PIYATID---DLGGSFPLKRHDKVDDLSKVGLSRNQELAQKIDNLNQAVSEAKAGFFGNL  1036

Query  1017  EQKIDELKDSTKKNALKLWVESAKQVPTGLQAKLDNYATNSHTRINSNVQSGTINEKATG  1076
             EQ ID+LKDSTK N+++LW ESAK+VP++L AKLDNYA NSHTRINSNV++G+INEKATG
Sbjct  1037  EQTIDNLKDSTKYNSVNLWAESAKKVPASLSAKLDNYAINSHTRINSNVKNGAINEKATG  1096

Query  1077  MLTQKNPEWLKLVNDKIVAHNVGSAHLSEYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDI  1136
             MLTQKNPEWLKLVNDKIVAHNVGS  LSEYDKIGFNQKNMKDYSDSFKFSTKLNNAVKD 
Sbjct  1097  MLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDT  1156

Query  1137  KSSFVQFLTNTFSTGSYS--LMKANVEHGVKN-TTKSGFQKS  1175
             KS+F +FL+N+FST+SY   L   N EHG+KN  TK+GFQKS
Sbjct  1157  KSGFTRFLANAFSTASYYYFLAGENAEHGIKNVNTKGGFQKS  1198

33) cagA in NC_017360


> AY330637|20|G20|37811806|AAR03881.1|Helicobacter_pylori_Ca52|+|21859..25455|cagA|HP0547|CagA
Length=1198

 Score = 1402 bits (5321),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 931/1205 (78%), Positives = 1069/1205 (89%), Gaps = 47/1205 (3%)

Query  1     MTNETIVQTTTPDQTLNQTDFVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDRDNR  60
             +  ET+ + T  +Q   ++ F PQ+FINNLQVAF+KVDNAVAS+DPDQKPIVDKNDRDNR
Sbjct  12    IEGETMTNETINQQPQTEAAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNR  71

Query  61    QAFEKISQLREEYANKAIKNPTKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQ  120
             QAFE ISQLREEY+NKAIKNPTKKNQYFSDFI+KSNDLINKDNL+ V+SS  SF+KFGDQ
Sbjct  72    QAFEGISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNLVDVESSTKSFQKFGDQ  131

Query  121   RYQIFTSWVSLQKDPSKINTQQIRNFMENIIQPPISDDKEKAEFLRSAKQSFAGIIIGNQ  180
             RYQIFTSWVS Q+DPSKINT+ IRNFMENIIQPPI+DDKEKAEFL+SAKQ+FAGIIIGNQ
Sbjct  132   RYQIFTSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQAFAGIIIGNQ  191

Query  181   IRSDEKFMGVFDESLKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPMPN  240
             IR+D+KFMGVFDESLK RQEAEKN+ P+GGDWLDIFLSFVFNKKQSSDLKETL+QEP+P+
Sbjct  192   IRTDQKFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSFVFNKKQSSDLKETLDQEPVPH  251

Query  241   VEQNLATTTTDIQGLPPEARDLLDERGNFSKFTLGDVEMLDVEGVADKDPNYKFNQLLIH  300
             V+ ++ATTTTDIQGLPPEARDLLDERGNFSKFTLGD+EMLDVEGVAD DPNYKFNQLLIH
Sbjct  252   VQPDIATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIH  311

Query  301   NNALSSVLMGSHSSIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLNN  360
             NNALSSVLMGSH++IEPEKVSLLYG+NGG  A+HDWNATVGYK+QQGNNVAT+IN H++N
Sbjct  312   NNALSSVLMGSHNGIEPEKVSLLYGGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKN  371

Query  361   GSGLVIAGNENGIKNPSFYLYKEDQLTGLKQAMSQEEIQNKVDFMEFLVQnnaklnnlse  420
             GSGLVIAG E+GI+NPSFYLYKEDQLTG ++A+SQEEIQNK++FMEFL QNNAKL+NLSE
Sbjct  372   GSGLVIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKINFMEFLAQNNAKLDNLSE  431

Query  421   kekekFQTEIENFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGEVSYTLKDYGK  480
             KEKEKF+TEIE+FQKD KAYLDALGND+IAFVSKKD KH AL+TEFGNG++SYTLKDYGK
Sbjct  432   KEKEKFRTEIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGK  491

Query  481   KQDKALDGETKTTLQGSLKYDGVMFVDYSNFKYTNASKSPDKGVGATNGVSHLEANFSKV  540
             K DKALD E + TLQGSLK DGVMFVDYSNFKYTNASK+P+KGVG TNGVSHLEA F KV
Sbjct  492   KADKALDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFDKV  551

Query  541   AVFNLPNLNNLAITNHIRRDLEDKLLAKGLSPQEANKLIKDFLNGNKEMVGKVLNFNKAV  600
             AVFNLP+LNNLAIT+ +RR+LEDKL +KGLS QEANKLIKDFLN+NKE+VGK LNFNKAV
Sbjct  552   AVFNLPDLNNLAITSFVRRNLEDKLATKGLSLQEANKLIKDFLNSNKELVGKALNFNKAV  611

Query  601   AEAKNTGNYGEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKI  660
             AEAKNTGNY+EVKKAQKDLEKSL+KREHLEKEVAKKLES+++NKN+MEAK+QANSQKD I
Sbjct  612   AEAKNTGNYDEVKKAQKDLEKSLKKREHLEKEVAKKLESKSGNKNKMEAKSQANSQKDEI  671

Query  661   FALINKEASKEARAAAFDPNLKGIRSELSDKLENINKNLKDFGKSFDELKNGKNNDFSKA  720
             FALINKEA+++ARA A+  NLKGI+ ELSDKLENINK+LKDF+KSFDE+KNGKN+DFSKA
Sbjct  672   FALINKEANRDARAIAYAQNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKA  731

Query  721   EETLKALKDSVKDLGINPEWISKIENLNAALNDFKNGKNNDFSKVTQAKSDLENSIKDVI  780
             EETLKALK+SVKDLGINPEWISK+ENLN+ALN+FKNGKN+DFSKVTQAKSDLENSIKDVI
Sbjct  732   EETLKALKGSVKDLGINPEWISKVENLNTALNEFKNGKNKDFSKVTQAKSDLENSIKDVI  791

Query  781   INQKITDKVDNLNQAVSETKLTGDFSKVEQALAELKSLS-------------FDLGKNSD  827
             INQKITDKVDNLNQAVS +K TGDFS VEQALA+LK++S             F+ GKNS+
Sbjct  792   INQKITDKVDNLNQAVSIAKATGDFSGVEQALADLKNFSKGQLAQQAQKNEDFNTGKNSE  851

Query  828   LQKSVKngvngtlvgnglSKTEATTLTKNFSDIRKELneklfgnsnnnnnglknsTEPIY  887
             + +SVKNGVNGTLVGNGLSK+EATTL+KNFSDI+KEL       + NNNN      EPIY
Sbjct  852   IYQSVKNGVNGTLVGNGLSKAEATTLSKNFSDIKKEL--EAKLGNFNNNNNNGLKNEPIY  909

Query  888   AKVNKKKTGQAASPEEPIYAQVAKKVSAKIDQLNE-----------ATLAINR--KIDRI  934
             AKVNKKK+GQAASPEEPIYAQVAKKV+AKID+LN+           A ++++R  K+D +
Sbjct  910   AKVNKKKAGQAASPEEPIYAQVAKKVNAKIDRLNQIASGLGGVGQAAGFPLKRHDKVDDL  969

Query  935   NKIasagkgvggfsgagrsasPEPIYATIDFDETNQAGFPLRRSAAVNDLSKVGLSREQE  994
             +K+             G SA+ EPIYATID      ++FPL+R   V+DLSKVGLSR+QE
Sbjct  970   SKV-------------GLSANHEPIYATID---DLGGSFPLKRHDKVDDLSKVGLSRNQE  1013

Query  995   LTRRIGDLNQAVSEAKTGHFDNLEQKIDELKDSTKKNALKLWVESAKQVPTGLSAKLDNY  1054
             L+++I++LNQAVSEAK+G F+NLEQ ID+LKDSTK N+++LW ESAK+VP++LSAKLDNY
Sbjct  1014  LAQKIDNLNQAVSEAKAGFFGNLEQTIDNLKDSTKYNSVNLWAESAKKVPASLSAKLDNY  1073

Query  1055  ATNSHTRINSNVQSGTINEKATGVLTQKNPEWLKLVNDKIVAHNVGSAHLSEYDKIGFNQ  1114
             A NSHTRINSNV++G+INEKATG+LTQKNPEWLKLVNDKIVAHNVGS  LSEYDKIGFNQ
Sbjct  1074  AINSHTRINSNVKNGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQ  1133

Query  1115  KNMKDYSDSFKFSTKLNNAVKDIKSSFVQFLTNTFSTGSYS--LMKANVEHGVKN-TTKS  1171
             KNMKDYSDSFKFSTKLNNAVKD KS+F +FL+N+FST+SY   L   N EHG+KN  TK+
Sbjct  1134  KNMKDYSDSFKFSTKLNNAVKDTKSGFTRFLANAFSTASYYYFLAGENAEHGIKNVNTKG  1193

Query  1172  GFQKS  1176
             GFQKS
Sbjct  1194  GFQKS  1198

34) cag26 in NC_017382


> AY330637|20|G20|37811806|AAR03881.1|Helicobacter_pylori_Ca52|+|21859..25455|cagA|HP0547|CagA
Length=1198

 Score = 1402 bits (5320),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 929/1202 (78%), Positives = 1063/1202 (89%), Gaps = 40/1202 (3%)

Query  1     MTNETIDQTTTPDQTLNQTDFVPQRFIHNLQVAFIKVDNAVASFDPDQKPIVDKNDRDNR  60
             +  ET+ + T  +Q   ++ F PQ+FI+NLQVAF+KVDNAVAS+DPDQKPIVDKNDRDNR
Sbjct  12    IEGETMTNETINQQPQTEAAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNR  71

Query  61    QAFEKISQLREEYankaiknpakknQYFSDFINKSNDLINKDNLIAVDSSVDSFRKFGDQ  120
             QAFE ISQLREEY+NKAIKNP+KKNQYFSDFI+KSNDLINKDNL+ V+SS  SF+KFGDQ
Sbjct  72    QAFEGISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNLVDVESSTKSFQKFGDQ  131

Query  121   RYQIFTSWVSLQKDPSKINTQQIRNFMENIIQPPISDDKEKAEFLRSAKQSFAGIIIGNQ  180
             RYQIFTSWVS Q+DPSKINT+ IRNFMENIIQPPI+DDKEKAEFL+SAKQ+FAGIIIGNQ
Sbjct  132   RYQIFTSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQAFAGIIIGNQ  191

Query  181   IRSDEKFMGVFDESLKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPD  240
             IR+D+KFMGVFDESLK RQEAEKN+ P+GGDWLDIFLSFVFNKKQSSDLKETL+QEP P+
Sbjct  192   IRTDQKFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSFVFNKKQSSDLKETLDQEPVPH  251

Query  241   FEQNLATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADKDPNYKFNQLLIH  300
              + ++ATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVAD DPNYKFNQLLIH
Sbjct  252   VQPDIATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIH  311

Query  301   NNALSSVLMGGHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLNN  360
             NNALSSVLMG+H+ IEPEKVSLLYG+NGG  A+HDWNATVGYK+QQGNNVAT+IN H++N
Sbjct  312   NNALSSVLMGSHNGIEPEKVSLLYGGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKN  371

Query  361   GSGLIIAGNEDGIKNPSFYLYKEDQLTGLKQAMSQEEIQNKVDFMEFLAQNNAKLDNLSE  420
             GSGL+IAG E GI+NPSFYLYKEDQLTG ++A+SQEEIQNK++FMEFLAQNNAKLDNLSE
Sbjct  372   GSGLVIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKINFMEFLAQNNAKLDNLSE  431

Query  421   KEKEKFQTEIENFQKDRKAYLDALGNDRIAFVSKKDPKHLALVTEFGNGEVSYTLKDYGK  480
             KEKEKF+TEIE+FQKD KAYLDALGNDRIAFVSKKD KH AL+TEFGNG++SYTLKDYGK
Sbjct  432   KEKEKFRTEIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGK  491

Query  481   KQDKALDGETKTTLQGNLKYDGVMFVNYSNFKYTNASKSPDKGIGTTNGVSHLEANFSKV  540
             K DKALD E + TLQG+LK DGVMFV+YSNFKYTNASK+P+KG+G TNGVSHLEA F KV
Sbjct  492   KADKALDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFDKV  551

Query  541   AVFNLPNLNNLAITNYIRRDLEEKLWAKGLSLQEANKLIKDFLNSNKEMVRKVSNFNKAV  600
             AVFNLP+LNNLAIT+++RR+LE+KL +KGLSLQEANKLIKDFLNSNKE+V K  NFNKAV
Sbjct  552   AVFNLPDLNNLAITSFVRRNLEDKLATKGLSLQEANKLIKDFLNSNKELVGKALNFNKAV  611

Query  601   AEAKNTGNYDGVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNKMEAKAQANSQKDKI  660
             AEAKNTGNYD VKKAQKDLEKSL+KREHLEKEVAKKLES+++NKNKMEAK+QANSQKD I
Sbjct  612   AEAKNTGNYDEVKKAQKDLEKSLKKREHLEKEVAKKLESKSGNKNKMEAKSQANSQKDEI  671

Query  661   FALINKEASKEARAAAFDPNLKGIRSELSDKLENINKNLKDFGKSFDELKNGKNKDFSKA  720
             FALINKEA+++ARA A+  NLKGI+ ELSDKLENINK+LKDF+KSFDE+KNGKNKDFSKA
Sbjct  672   FALINKEANRDARAIAYAQNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKA  731

Query  721   EETLKALKDSVKDLGINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVI  780
             EETLKALK+SVKDLGINPEWISK+ENLN+ALN+FKNGKNKDFSKVTQAKSDLENSIKDVI
Sbjct  732   EETLKALKGSVKDLGINPEWISKVENLNTALNEFKNGKNKDFSKVTQAKSDLENSIKDVI  791

Query  781   INQKITDKVDNLNQAVSETKLTGDFSKVEQALAELKSLS-------------LDLGKNSD  827
             INQKITDKVDNLNQAVS +K TGDFS VEQALA+LK++S             ++ GKNS+
Sbjct  792   INQKITDKVDNLNQAVSIAKATGDFSGVEQALADLKNFSKGQLAQQAQKNEDFNTGKNSE  851

Query  828   LQKSVKngvngtlvgnglSKTEATTLTKNFSDIRKElneklfgnsnnnnnglknnTEPIY  887
             + +SVKNGVNGTLVGNGLSK+EATTL+KNFSDI+KE        + NNNN    + EPIY
Sbjct  852   IYQSVKNGVNGTLVGNGLSKAEATTLSKNFSDIKKE--LEAKLGNFNNNNNNGLKNEPIY  909

Query  888   AQVNKKKTGQAASPEESIYAQVAKKVSAKIDQLNESASAIN----------RKIDRINKI  937
             A+VNKKK+GQAASPEE+IYAQVAKKV+AKID+LN+ AS++           ++ D+++ +
Sbjct  910   AKVNKKKAGQAASPEEPIYAQVAKKVNAKIDRLNQIASGLGGVGQAAGFPLKRHDKVDDL  969

Query  938   asagkgvggfsgagrsasPEPIYATIDFDEANQAGFPLRRYAPVDDLSKVGLSREQELTR  997
                       S  G SA+ EPIYATID      ++FPL+R   VDDLSKVGLSR+QEL++
Sbjct  970   ----------SKVGLSANHEPIYATID---DLGGSFPLKRHDKVDDLSKVGLSRNQELAQ  1016

Query  998   RIGDLNQAVSEAKIGHFDNLEQKIDELKDSTKKNALKLWVESAKQVPTGLQAKLDNYATN  1057
             +I++LNQAVSEAK G F+NLEQ ID+LKDSTK N+++LW ESAK+VP++L AKLDNYA N
Sbjct  1017  KIDNLNQAVSEAKAGFFGNLEQTIDNLKDSTKYNSVNLWAESAKKVPASLSAKLDNYAIN  1076

Query  1058  SHTRINSNVQTGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGSAHLSEYDKIGFNQKNM  1117
             SHTRINSNV+ GAINEKATGMLTQKNPEWLKLVNDKIVAHNVGS  LSEYDKIGFNQKNM
Sbjct  1077  SHTRINSNVKNGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNM  1136

Query  1118  KDYSDSFKFSTKLNNAVKDIKSSFVQFLTNTFSTGSYS--LMKANAEHGVKNTNTKGGFQ  1175
             KDYSDSFKFSTKLNNAVKD KS+F +FL+N+FST+SY   L   NAEHG+KN NTKGGFQ
Sbjct  1137  KDYSDSFKFSTKLNNAVKDTKSGFTRFLANAFSTASYYYFLAGENAEHGIKNVNTKGGFQ  1196

Query  1176  KS  1177
             KS
Sbjct  1197  KS  1198

35) cagA in NC_017368


> AY330637|20|G20|37811806|AAR03881.1|Helicobacter_pylori_Ca52|+|21859..25455|cagA|HP0547|CagA
Length=1198

 Score = 1394 bits (5290),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 925/1198 (78%), Positives = 1063/1198 (89%), Gaps = 42/1198 (3%)

Query  1     MTNETIDQTTTPDQTGFVPQRFINNLQVAFIKVDNAVASFDPDQKSIVDKNDKDNRQAFE  60
             MTNETI+Q    + ++F PQ+FINNLQVAF+KVDNAVAS+DPDQK+IVDKND+DNRQAFE
Sbjct  17    MTNETINQQPQTE-AAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNRQAFE  75

Query  61    KISQLREEYankaiknpakknQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQRYQI  120
              ISQLREEY+NKAIKNP+KKNQYFSDFI+KSNDLINKDNL+ V+SS  SF+KFGDQRYQI
Sbjct  76    GISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNLVDVESSTKSFQKFGDQRYQI  135

Query  121   FTSWVSLQKDPSKINTQQIRNFMENVIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSD  180
             FTSWVS Q+DPSKINT+ IRNFMEN+IQPPI+DDKEKAEFL+SAKQ+FAGIIIGNQIR+D
Sbjct  136   FTSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQAFAGIIIGNQIRTD  195

Query  181   EKFMGVFDESLKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPDFEQN  240
             +KFMGVFDESLK RQEAEKN+ P+GGDWLDIFLSFVFNKKQSSDLKETL+QEP P+ + +
Sbjct  196   QKFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSFVFNKKQSSDLKETLDQEPVPHVQPD  255

Query  241   LATTTTDIQGLPPEARDLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIHNNAL  300
             +ATTTTDIQGLPPEARDLLDERGNF KFTLGD+EMLDVEGVAD DPNYKFNQLLIHNNAL
Sbjct  256   IATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNAL  315

Query  301   SSMLMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKDQQGNNVATLINAHLNNDSGL  360
             SS+LMGSH+ IEPEKVSLLYG+NGG  A+HDWNATVGYKDQQGNNVAT+IN H++N+SGL
Sbjct  316   SSVLMGSHNGIEPEKVSLLYGGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKNGSGL  375

Query  361   IIAGNEDGIKNPSFYLYKEDQLTGLKQAMSQEEIQNKVDFMEFLAQNNAKLDNLSEKEKE  420
             +IAG E GI+NPSFYLYKEDQLTG ++A+SQEEIQNK++FMEFLAQNNAKLDNLSEKEKE
Sbjct  376   VIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKINFMEFLAQNNAKLDNLSEKEKE  435

Query  421   KFQAEIENFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGEVSYTLKDYGKKQDK  480
             KF++EIE+FQKD KAYLDALGND+IAFVSKKD KH AL+TEFGNG++SYTLKDYGKK DK
Sbjct  436   KFRTEIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGKKADK  495

Query  481   ALDGETKTTLQGNLKYDGVMFVDYSNFKYTNASKSPDKGVGATNGVSHLEANFSKVAVFN  540
             ALD E + TLQG+LK DGVMFVDYSNFKYTNASK+P+KGVG TNGVSHLEA F KVAVFN
Sbjct  496   ALDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFDKVAVFN  555

Query  541   LPNLNNLAITNYIRRDLEDKLWAKGLSSQEANKLIKDFLNSNKEMVGKVLNFNKAVAEAK  600
             LP+LNNLAIT+++RR+LEDKL +KGLS QEANKLIKDFLNSNKE+VGK LNFNKAVAEAK
Sbjct  556   LPDLNNLAITSFVRRNLEDKLATKGLSLQEANKLIKDFLNSNKELVGKALNFNKAVAEAK  615

Query  601   NTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKIFALI  660
             NTGNYDEVKKAQKDLEKSL+KREHLEKEVAKKLES+++NKN+MEAK+QANSQKD IFALI
Sbjct  616   NTGNYDEVKKAQKDLEKSLKKREHLEKEVAKKLESKSGNKNKMEAKSQANSQKDEIFALI  675

Query  661   NQEASKEARAAVFDPNLKGIRSELSDKLENINKNLKDFGKSFDELKNGKNNDFSKAEETL  720
             N+EA+++ARA  +  NLKGI+ ELSDKLENINK+LKDF+KSFDE+KNGKN+DFSKAEETL
Sbjct  676   NKEANRDARAIAYAQNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKAEETL  735

Query  721   KALKDSVKDLGINPEWISKIENLNVALNDFKNGKNKDFSKVTQAKSDLENSIKDVIINQK  780
             KALK+SVKDLGINPEWISK+ENLN ALN+FKNGKNKDFSKVTQAKSDLENSIKDVIINQK
Sbjct  736   KALKGSVKDLGINPEWISKVENLNTALNEFKNGKNKDFSKVTQAKSDLENSIKDVIINQK  795

Query  781   ITDKVDNLNQAVSETKLTGDFSKVEQALAELKSLS-------------LDLGKNSDLQKS  827
             ITDKVDNLNQAVS +K TGDFS VEQALA+LK++S             ++ GKNS++ +S
Sbjct  796   ITDKVDNLNQAVSIAKATGDFSGVEQALADLKNFSKGQLAQQAQKNEDFNTGKNSEIYQS  855

Query  828   VKngvngtlvgnglSKTEATTLTKNFSDIRKELneklfgnsnnnnnglknsAEPIYAKVN  887
             VKNGVNGTLVGNGLSK+EATTL+KNFSDI+KEL       + NNNN      EPIYAKVN
Sbjct  856   VKNGVNGTLVGNGLSKAEATTLSKNFSDIKKEL--EAKLGNFNNNNNNGLKNEPIYAKVN  913

Query  888   KKKTGQATSPEEPIYAQVAKKVSAKIDQLNESTSAIN----------RKIDRINKIasag  937
             KKK+GQA+SPEEPIYAQVAKKV+AKID+LN+ +S++           ++ D+++ +    
Sbjct  914   KKKAGQAASPEEPIYAQVAKKVNAKIDRLNQIASGLGGVGQAAGFPLKRHDKVDDL----  969

Query  938   kgvggfsgagrsasPEPIYATIDFDEANQAGFPLRRSAAVNDLSKVGLSREQELTRRIGD  997
                   S  G SA+ EPIYATID      ++FPL+R   V+DLSKVGLSR+QEL+++I++
Sbjct  970   ------SKVGLSANHEPIYATID---DLGGSFPLKRHDKVDDLSKVGLSRNQELAQKIDN  1020

Query  998   LNQAVSEAKTGHFDNLEQKIDELKDSTKKNALKLWVESAKQVPTGLQAKLDNYATNSHTR  1057
             LNQAVSEAK+G F+NLEQ ID+LKDSTK N+++LW ESAK+VP++L AKLDNYA NSHTR
Sbjct  1021  LNQAVSEAKAGFFGNLEQTIDNLKDSTKYNSVNLWAESAKKVPASLSAKLDNYAINSHTR  1080

Query  1058  INSNVHNGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGSAHLSEYDKIGFNQKNMKDYS  1117
             INSNV NGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGS  LSEYDKIGFNQKNMKDYS
Sbjct  1081  INSNVKNGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYS  1140

Query  1118  DSFKFSTKLNNAVKDIKSSFVQFLTNTFSTGSYS--LTKANVEHGVKN-TTKSGFQKS  1172
             DSFKFSTKLNNAVKD KS+F +FL+N+FST+SY   L+  N EHG+KN  TK+GFQKS
Sbjct  1141  DSFKFSTKLNNAVKDTKSGFTRFLANAFSTASYYYFLAGENAEHGIKNVNTKGGFQKS  1198

36) HPKB_0795 in NC_017354


> AY330637|20|G20|37811806|AAR03881.1|Helicobacter_pylori_Ca52|+|21859..25455|cagA|HP0547|CagA
Length=1198

 Score = 1391 bits (5280),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 926/1233 (76%), Positives = 1067/1233 (87%), Gaps = 76/1233 (6%)

Query  1     MTNEIIDQTTTPNQTDFVPQRFINNLQVAFLKVDNAVASFDPDQKPIVDKNDRDNRQAFE  60
             MTNE I+Q     ++ F PQ+FINNLQVAFLKVDNAVAS+DPDQKPIVDKNDRDNRQAFE
Sbjct  17    MTNETINQQP-QTEAAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNRQAFE  75

Query  61    KISQLKEEYANKAIKNPTKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQRYQI  120
              ISQL+EEY+NKAIKNPTKKNQYFSDFI+KSNDLINKDNL+ V+SS  SF+KFGDQRYQI
Sbjct  76    GISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNLVDVESSTKSFQKFGDQRYQI  135

Query  121   FMNWVSHQKDPSKINTQQIRNFMENIIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSD  180
             F +WVSHQ+DPSKINT+ IRNFMENIIQPPI+DDKEKAEFL+SAKQ+FAGIIIGNQIR+D
Sbjct  136   FTSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQAFAGIIIGNQIRTD  195

Query  181   QKFMGVFDESLKERQEAEKNGEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPDFEQN  240
             QKFMGVFDESLKERQEAEKNG P+GGDWLDIFLSFVFNKKQSSDLKETL+QEP P+ + +
Sbjct  196   QKFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSFVFNKKQSSDLKETLDQEPVPHVQPD  255

Query  241   LATTTTNIQGLPPESRDLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIHNNAL  300
             +ATTTT+IQGLPPE+RDLLDERGNF KFTLGD+EMLDVEGVAD DPNYKFNQLLIHNNAL
Sbjct  256   IATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNAL  315

Query  301   SSVLMGGHSNIEPEKVSLLYGGNGGPEARHDWNATVGYKNQQGNNVATLINAHLNNGSGL  360
             SSVLMG+H+ IEPEKVSLLYGGNGG  A+HDWNATVGYK+QQGNNVAT+IN H++NGSGL
Sbjct  316   SSVLMGSHNGIEPEKVSLLYGGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKNGSGL  375

Query  361   IIAGNENGIKNPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLVQNNAKLDNLSEKEKE  420
             +IAG E+GI+NPSFYLYKEDQLTG ++ALSQEEIQNK++FMEFL QNNAKLDNLSEKEKE
Sbjct  376   VIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKINFMEFLAQNNAKLDNLSEKEKE  435

Query  421   KFQTEIENFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGEVSYTLKDYGKKQDK  480
             KF+TEIE+FQKD KAYLDALGND+IAFVSKKD KH AL+TEFGNG++SYTLKDYGKK DK
Sbjct  436   KFRTEIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGKKADK  495

Query  481   ALDGETKTTLQGNLKHDGVMFVNYSNFKYTNASKSPDKGVGATNGVSRLEANLSKVAVFN  540
             ALD E + TLQG+LKHDGVMFV+YSNFKYTNASK+P+KGVG TNGVS+LEA + KVAVFN
Sbjct  496   ALDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFDKVAVFN  555

Query  541   LPNLNNLAITNYIRRDLEDKLWAKGLSPQEANKLIKDFLNSNKELLGKVSNFNKAVAEAK  600
             LP+LNNLAIT+++RR+LEDKL +KGLS QEANKLIKDFLNSNKEL+GK  NFNKAVAEAK
Sbjct  556   LPDLNNLAITSFVRRNLEDKLATKGLSLQEANKLIKDFLNSNKELVGKALNFNKAVAEAK  615

Query  601   NTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKIFALI  660
             NTGNYDEVKKAQKDLEKSL+KREHLEKEVAKKLES+++NKN+MEAK+QANSQKD IFALI
Sbjct  616   NTGNYDEVKKAQKDLEKSLKKREHLEKEVAKKLESKSGNKNKMEAKSQANSQKDEIFALI  675

Query  661   NQEASKEARAVAFDPNLKGVRSELSDKLENINKNLKDFGKSFDELKSGKNNDFNKAEETL  720
             N+EA+++ARA+A+  NLKG++ ELSDKLENINK+LKDF+KSFDE+K+GKN+DF+KAEETL
Sbjct  676   NKEANRDARAIAYAQNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKAEETL  735

Query  721   KALKDSVKDLGINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDFENSIKDVIINQK  780
             KALK+SVKDLGINPEWISK+ENLN+ALN+FKNGKNKDFSKVTQAKSD+ENSIKDVIINQK
Sbjct  736   KALKGSVKDLGINPEWISKVENLNTALNEFKNGKNKDFSKVTQAKSDLENSIKDVIINQK  795

Query  781   ITDKVDNLNQAVSETKLTGDFSKVEQALAELKNLS-------------LDLGKNSDLQKS  827
             ITDKVDNLNQAVS +K TGDFS VEQALA+LKN+S             ++ GKNS++ +S
Sbjct  796   ITDKVDNLNQAVSIAKATGDFSGVEQALADLKNFSKGQLAQQAQKNEDFNTGKNSEIYQS  855

Query  828   VKngvngtlvgnglSKTEATTLAKNFSDIRKELneklfgnsnnnnnglknsTEPIYAKVA  887
             VKNGVNGTLVGNGLSK+EATTL+KNFSDI+KEL+ KL   +NNNNNGLK   EPIYAKV 
Sbjct  856   VKNGVNGTLVGNGLSKAEATTLSKNFSDIKKELEAKLGNFNNNNNNGLK--NEPIYAKVN  913

Query  888   KKVSVKIDQLNEATSAINRKIDRINKIasagkgvggfsgagrsasPEPIYAQVAKKVSAK  947
             KK +       +A+S+                              EPIYAQVAKKV+AK
Sbjct  914   KKKA------GQAASP-----------------------------EEPIYAQVAKKVNAK  938

Query  948   IDQLNEATSAIN----------RKIDRINKIasagkgvggfsgagrsasPEPIYATIDFD  997
             ID+LN+ +S++           ++ D+++ ++  G +             EPIYATID  
Sbjct  939   IDRLNQIASGLGGVGQAAGFPLKRHDKVDDLSKVGLSAN----------HEPIYATID--  986

Query  998   EANQAGFPLMRSAAVNDLSKVGLSREQELTRRIGDLNQAVSEAKTGHFGNLEQKIDELKD  1057
                 ++FPL R   V+DLSKVGLSR+QEL+++I++LNQAVSEAK+G FGNLEQ ID+LKD
Sbjct  987   -DLGGSFPLKRHDKVDDLSKVGLSRNQELAQKIDNLNQAVSEAKAGFFGNLEQTIDNLKD  1045

Query  1058  STKKNALKLWVESAKQVPTGLQAKLDNYATNSHTRINSNVQSGAINEKATGMLMQKNPEW  1117
             STK N+++LW ESAK+VP++L AKLDNYA NSHTRINSNV++GAINEKATGML QKNPEW
Sbjct  1046  STKYNSVNLWAESAKKVPASLSAKLDNYAINSHTRINSNVKNGAINEKATGMLTQKNPEW  1105

Query  1118  LKLVNDKIVAHNVGSTPLSEYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDVKSDFVQFLT  1177
             LKLVNDKIVAHNVGS PLSEYDKIGFNQKNMKDYSDSFKFSTKLNNAVKD KS+F +FL+
Sbjct  1106  LKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDTKSGFTRFLA  1165

Query  1178  NAFSTGSYS--LMKANAEHGVKNTNTKGGFQKS  1208
             NAFST+SY   L   NAEHG+KN NTKGGFQKS
Sbjct  1166  NAFSTASYYYFLAGENAEHGIKNVNTKGGFQKS  1198

37) cagA in NC_017367


> AY330637|20|G20|37811806|AAR03881.1|Helicobacter_pylori_Ca52|+|21859..25455|cagA|HP0547|CagA
Length=1198

 Score = 1388 bits (5268),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 926/1197 (78%), Positives = 1067/1197 (90%), Gaps = 42/1197 (3%)

Query  1     MTNETIDQTPN-QTDFVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDRDNRQAFER  59
             MTNETI+Q P+ ++ F PQ+FINNLQVAF+KVDNAVAS+DPDQKPIVDKNDRDNRQAFE 
Sbjct  17    MTNETINQQPQTEAAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNRQAFEG  76

Query  60    ISQLREEYankaiknpakknQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQRYQIF  119
             ISQLREEY+NKAIKNP+KKNQYFSDFI+KSNDLINKDNL+ V+SS  SF+KFGDQRYQIF
Sbjct  77    ISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNLVDVESSTKSFQKFGDQRYQIF  136

Query  120   TSWVSLQKDPSKINTQQIRNFMENIIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSDE  179
             TSWVS Q+DPSKINT+ IRNFMENIIQPPI+DDKEKAEFL+SAKQ+FAGIIIGNQIR+D+
Sbjct  137   TSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQAFAGIIIGNQIRTDQ  196

Query  180   KFMGVFDESLKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPDFEQNL  239
             KFMGVFDESLK RQEAEKN+ P+GGDWLDIFLSFVFNKKQSSDLKETL+QEP P+ + ++
Sbjct  197   KFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSFVFNKKQSSDLKETLDQEPVPHVQPDI  256

Query  240   STTTTDIQGLPPEARDLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIHNNALS  299
             +TTTTDIQGLPPEARDLLDERGNF KFTLGD+EMLDVEGVAD DPNYKFNQLLIHNNALS
Sbjct  257   ATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALS  316

Query  300   SVLMGGHSSIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGSNVATLINAHLNNGSGLI  359
             SVLMG+H++IEPEKVSLLYG+NGG  A+HDWNATVGYK+QQG+NVAT+IN H++NGSGL+
Sbjct  317   SVLMGSHNGIEPEKVSLLYGGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKNGSGLV  376

Query  360   IAGNENGIKNPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLDNLSEKEKEK  419
             IAG E+GI+NPSFYLYKEDQLTG ++ALSQEEIQNK++FMEFLAQNNAKLDNLSEKEKEK
Sbjct  377   IAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKINFMEFLAQNNAKLDNLSEKEKEK  436

Query  420   FQAEIENFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGEVSYTLKDYGKKQDKA  479
             F++EIE+FQKD KAYLDALGND+IAFVSKKD KH AL+TEFGNG++SYTLKDYGKK DKA
Sbjct  437   FRTEIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGKKADKA  496

Query  480   LDGETKTTLQGSLKYDGLMFVNYSNFKYTNASKSPDKGVGATNGVSHLEANFSKVAVFNL  539
             LD E + TLQGSLK DG+MFV+YSNFKYTNASK+P+KGVG TNGVSHLEA F KVAVFNL
Sbjct  497   LDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFDKVAVFNL  556

Query  540   PNLNNLAITNYIRRDLEDKLWAKGLSSQEANKLIKDFLNSNKELLGKVSNFNKAVAEAKN  599
             P+LNNLAIT+++RR+LEDKL +KGLS QEANKLIKDFLNSNKEL+GK  NFNKAVAEAKN
Sbjct  557   PDLNNLAITSFVRRNLEDKLATKGLSLQEANKLIKDFLNSNKELVGKALNFNKAVAEAKN  616

Query  600   TGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKIFALIN  659
             TGNYDEVKKAQKDLEKSL+KREHLEKEVAKKLES+++NKN+MEAK+QANSQKD IFALIN
Sbjct  617   TGNYDEVKKAQKDLEKSLKKREHLEKEVAKKLESKSGNKNKMEAKSQANSQKDEIFALIN  676

Query  660   QEASKEARAAAFDPNLKGIRSELSDKLENINKNLKDFGKSFDELKSGKNKDFSKAEETLK  719
             +EA+++ARA A+  NLKGI+ ELSDKLENINK+LKDF+KSFDE+K+GKNKDFSKAEETLK
Sbjct  677   KEANRDARAIAYAQNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKAEETLK  736

Query  720   ALKDSVKDLGINPEWISKIENLNTALNDFKNGKNKDFSKVTQAKSDLENSIKDVIINQKI  779
             ALK+SVKDLGINPEWISK+ENLNTALN+FKNGKNKDFSKVTQAKSDLENSIKDVIINQKI
Sbjct  737   ALKGSVKDLGINPEWISKVENLNTALNEFKNGKNKDFSKVTQAKSDLENSIKDVIINQKI  796

Query  780   TDKVDNLNQAVSETKLTGNFSKVEQALAELKSLS-------------LDLGKNSDLQKSV  826
             TDKVDNLNQAVS +K TG+FS VEQALA+LK++S             ++ GKNS++ +SV
Sbjct  797   TDKVDNLNQAVSIAKATGDFSGVEQALADLKNFSKGQLAQQAQKNEDFNTGKNSEIYQSV  856

Query  827   KngvngtlvgnglSKTEATTLTKNFSDIRKElneklfgnsnnnnnglknnTEPIYAQVNK  886
             KNGVNGTLVGNGLSK+EATTL+KNFSDI+KE        + NNNN    + EPIYA+VNK
Sbjct  857   KNGVNGTLVGNGLSKAEATTLSKNFSDIKKE--LEAKLGNFNNNNNNGLKNEPIYAKVNK  914

Query  887   KKAGQAASPEEPIYAQVAKKVSAKIDQLNEATSAIN----------RKIDRINKIasagk  936
             KKAGQAASPEEPIYAQVAKKV+AKID+LN+ +S++           ++ D+++ +     
Sbjct  915   KKAGQAASPEEPIYAQVAKKVNAKIDRLNQIASGLGGVGQAAGFPLKRHDKVDDL-----  969

Query  937   gvggfsgagrsasPEPIYATIDFDEANQAGFPLRRYAGFDDLSKVGLSREQELTRRIGDL  996
                  S  G SA+ EPIYATID      ++FPL+R    DDLSKVGLSR+QEL+++I++L
Sbjct  970   -----SKVGLSANHEPIYATID---DLGGSFPLKRHDKVDDLSKVGLSRNQELAQKIDNL  1021

Query  997   NQAVSEAKTGRFDNLEQKIDELKDSTKKNALKLWVESTKQVPTSLQAKLDNYATNSHTRI  1056
             NQAVSEAK+G F+NLEQ ID+LKDSTK N+++LW ES+K+VP+SL AKLDNYA NSHTRI
Sbjct  1022  NQAVSEAKAGFFGNLEQTIDNLKDSTKYNSVNLWAESAKKVPASLSAKLDNYAINSHTRI  1081

Query  1057  NSNVQSGTINEKATGMLTQKNPEWLKLVNDKIVAHNVGSAHLSEYDKIGFNQKNMKDYSD  1116
             NSNV++G+INEKATGMLTQKNPEWLKLVNDKIVAHNVGS  LSEYDKIGFNQKNMKDYSD
Sbjct  1082  NSNVKNGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSD  1141

Query  1117  SFKFSTKLNNAVKDIKSSFVQFLTNTFSTGSYS--LMKANAEHGVKN-TTKSGFQKS  1170
             SFKFSTKLNNAVKD KS+F +FL+N+FST+SY   L   NAEHG+KN  TK+GFQKS
Sbjct  1142  SFKFSTKLNNAVKDTKSGFTRFLANAFSTASYYYFLAGENAEHGIKNVNTKGGFQKS  1198

38) HPSH_04145 in NC_010698


> AY330637|20|G20|37811806|AAR03881.1|Helicobacter_pylori_Ca52|+|21859..25455|cagA|HP0547|CagA
Length=1198

 Score = 1386 bits (5259),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 917/1191 (77%), Positives = 1052/1191 (89%), Gaps = 39/1191 (3%)

Query  1     MANETINQTKNPDQTPNQTAFDPQQFINNLQVAFIKVDSAVASFDPDQKPIVDKNDRDNR  60
             M+NETINQ     Q   ++AF+PQQFINNLQVAF+KVD+AVAS+DPDQKPIVDKNDRDNR
Sbjct  17    MTNETINQ-----QPQTEAAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNR  71

Query  61    QAFNGISQLREEYankaiknpnkknQYFSDFINKSNDLINKDNLIDTDSSTKSFQKFGPE  120
             QAF+GISQLREEY+NKAIKNP KKNQYFSDFI+KSNDLINKDNL+D +SSTKSFQKFG +
Sbjct  72    QAFEGISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNLVDVESSTKSFQKFGDQ  131

Query  121   PYQIFMNWVSHQKDPSKINTQKIRDFMENIIQPPISDDKEKAEFLRSAKQSFAGIIIGNQ  180
              YQIF +WVSHQ+DPSKINT+ IR+FMENIIQPPI+DDKEKAEFL+SAKQ+FAGIIIGNQ
Sbjct  132   RYQIFTSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQAFAGIIIGNQ  191

Query  181   TRSDEKFMGVFEESLKEKQEAEKKGEPSG-DWLDIFLSFVFNKKQSSDLKETLNQEPRPN  239
              R+D+KFMGVF+ESLKE+QEAEK+G P+G DWLDIFLSFVFNKKQSSDLKETL+QEP P+
Sbjct  192   IRTDQKFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSFVFNKKQSSDLKETLDQEPVPH  251

Query  240   VEQNIATTPTPIQGLPLEARDLLDERGDFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIH  299
             V+ +IATT T IQGLP EARDLLDERG+FSKFTLGDMEMLDVEGVADIDPNYKFNQLLIH
Sbjct  252   VQPDIATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIH  311

Query  300   NNALSSMLMGSHGNIDLEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLKN  359
             NNALSS+LMGSH  I+ EKVSLLYG+NGG  A+HDWNATVGYK+QQGNNVAT+IN H+KN
Sbjct  312   NNALSSVLMGSHNGIEPEKVSLLYGGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKN  371

Query  360   GSGLIIAGNENGINNPSFYLYKKDQLTGLEQALSQEEIQNKLGFMEFLAQNSARHVGLNN  419
             GSGL+IAG E+GINNPSFYLYK DQLTG ++ALSQEEIQNK+ FMEFLAQN+A+   L+N
Sbjct  372   GSGLVIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKINFMEFLAQNNAK---LDN  428

Query  420   LSKEEKEKFQTEIGNFQKDPKAYLDTLGSDHIAFVSKKDQKHLALVTEFGNGELSYTLKD  479
             LS  EKEKF+TEI +FQKD+KAYLD+LG+D+IAFVSKKD KH AL+TEFGNG+LSYTLKD
Sbjct  429   LSEKEKEKFRTEIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKD  488

Query  480   YGKKPDRALDRETKTTLQGNLKDDGVMFVNYSNFKYTNASKSPNEGIGATNGVSHLEANF  539
             YGKK+D+ALDRE + TLQG+LK+DGVMFV+YSNFKYTNASK+PN G+G TNGVSHLEA F
Sbjct  489   YGKKADKALDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGF  548

Query  540   SKVAVFNLPDLNGLAVSSFARRNLEDKLAAKGLSGKESNKLIKDFLSSNKELLEKVLNFN  599
              KVAVFNLPDLN LA++SF RRNLEDKLA+KGLS +E+NKLIKDFL+SNKEL+ K LNFN
Sbjct  549   DKVAVFNLPDLNNLAITSFVRRNLEDKLATKGLSLQEANKLIKDFLNSNKELVGKALNFN  608

Query  600   KAVAEAKNTGNYDGVKKAQKDLEKSIRKRERLEKEITKQFESKSGNKNKMEAKAQANSQK  659
             KAVAEAKNTGNYD VKKAQKDLEKS++KRE+LEKE++K++ESKSGNKNKMEAK+QANSQK
Sbjct  609   KAVAEAKNTGNYDEVKKAQKDLEKSLKKREHLEKEVAKKLESKSGNKNKMEAKSQANSQK  668

Query  660   DEIFKLINEGAYKEARIIAYAQNLKGIRRELSDRMGNINKNLKDFNQSFDALKSGKNKDF  719
             DEIF LIN  A ++AR IAYAQNLKGI+RELSD++ NINK+LKDF++SFD +K+GKNKDF
Sbjct  669   DEIFALINKEANRDARAIAYAQNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDF  728

Query  720   SKVEETLKALKSSVKDLNINPEWISKVENLNVALNEFKNGKNKDFSKVTQAKSDLENSIK  779
             SK EETLKALK+SVKDL INPEWISKVENLN ALNEFKNGKNKDFSKVTQAKSDLENSIK
Sbjct  729   SKAEETLKALKGSVKDLGINPEWISKVENLNTALNEFKNGKNKDFSKVTQAKSDLENSIK  788

Query  780   DVHINQQITDKVDNLNQAVLVAKATGDFSRVEQALAGFKKF----LTD--QKNENFNVGK  833
             DV INQ+ITDKVDNLNQAV +AKATGDFS VEQALA++K+F    L++  QKNE+FN GK
Sbjct  789   DVIINQKITDKVDNLNQAVSIAKATGDFSGVEQALADLKNFSKGQLAQQAQKNEDFNTGK  848

Query  834   NSDL-QSvkngvngtlvgnglsvTEATTLTKKFSDIKKELNEKFANFNKNSNGLKNSAEP  892
             NS++ QSVKNGVNGTLVGNGLS +EATTL+K+FSDIKKEL+ K     +N+N      EP
Sbjct  849   NSEIYQSVKNGVNGTLVGNGLSKAEATTLSKNFSDIKKELEAK-LGNFNNNNNNGLKNEP  907

Query  893   IYAQVNKKKTGQVASPEESIYTQVAKEVNEKINRLNEKASASKGVGNFSG----------  942
             IYA+VNKKK+GQ ASPEE+IY+QVAK VN KI+RLN+ AS+  GVG+ +G          
Sbjct  908   IYAKVNKKKAGQAASPEEPIYAQVAKKVNAKIDRLNQIASGLGGVGQAAGFPLKRHDKVD  967

Query  943   ----AGRLDSPEPIYATIDDLGGSSPLKRHAKVDDLSKVGLSREQELTQKIGNLNQAVSE  998
                  G   + EPIYATIDDLGGS PLKRH KVDDLSKVGLSR+QEL+QKI+NLNQAVSE
Sbjct  968   DLSKVGLSANHEPIYATIDDLGGSFPLKRHDKVDDLSKVGLSRNQELAQKIDNLNQAVSE  1027

Query  999   AKAGSFGNLERTMDGLKDSTKKNVVNLWFEGARKVPISLQAKLDNYATNSHTRINSNVKN  1058
             AKAG FGNLE+T+D LKDSTK N VNLW E+A+KVP SL AKLDNYA NSHTRINSNVKN
Sbjct  1028  AKAGFFGNLEQTIDNLKDSTKYNSVNLWAESAKKVPASLSAKLDNYAINSHTRINSNVKN  1087

Query  1059  GTINEKATIMLTQKNPEWLKLVNDKIVAHNVGSTPLSDYDKIGFNQKNMKDYSDSFKFSI  1118
             G+INEKAT MLTQKNPEWLKLVNDKIVAHNVGS PLS+YDKIGFNQKNMKDYSDSFKFS 
Sbjct  1088  GAINEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFST  1147

Query  1119  KLSNAVKNIKSGFVQCLTDCISAGSY----SPKKAEHGV----TKSGFQKS  1161
             KL+NAVK+ KSGF + L++ +S++SY    +  +AEHG+    TK+GFQKS
Sbjct  1148  KLNNAVKDTKSGFTRFLANAFSTASYYYFLAGENAEHGIKNVNTKGGFQKS  1198

39) HPV225_0552 in NC_017355


> AY330637|20|G20|37811806|AAR03881.1|Helicobacter_pylori_Ca52|+|21859..25455|cagA|HP0547|CagA
Length=1198

 Score = 1367 bits (5188),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 925/1204 (77%), Positives = 1050/1204 (88%), Gaps = 59/1204 (4%)

Query  1     MANETINQTKKPDQTPSQTAFNPQQFISNLQVAFIKLDSAVASFDPDQKPIVDKNDRDNR  60
             M+NETINQ     Q  +++AFNPQQFI+NLQVAF+K+D+AVAS+DPDQKPIVDKNDRDNR
Sbjct  17    MTNETINQ-----QPQTEAAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNR  71

Query  61    QAFNVISQLREEYANKAIKNPTKKNQYFSDFIDKsndlinkdnlididssTKSFEKFGAQ  120
             QAF+ ISQLREEY+NKAIKNPTKKNQYFSDFIDKSNDLINKDNL+D++SSTKSF+KFG Q
Sbjct  72    QAFEGISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNLVDVESSTKSFQKFGDQ  131

Query  121   RYQIFMNWVSHQKDPSKINTQKIRNFMENIIQPPISDDKEKAEFLRSAKQSFAGIIIGNQ  180
             RYQIF +WVSHQ+DPSKINT+ IRNFMENIIQPPI+DDKEKAEFL+SAKQ+FAGIIIGNQ
Sbjct  132   RYQIFTSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQAFAGIIIGNQ  191

Query  181   IRSDEKFMGVFDESLKERQEAEKNGEPAGGDWLDIFLSFVFNKEQSSDLKETLNQEPRPN  240
             IR+D+KFMGVFDESLKERQEAEKNG P+GGDWLDIFLSFVFNK QSSDLKETL+QEP P+
Sbjct  192   IRTDQKFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSFVFNKKQSSDLKETLDQEPVPH  251

Query  241   VEQNVASTPTHIQGLPPEARDLLDERGDFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIH  300
             V+ ++A+T T+IQGLPPEARDLLDERG+FSKFTLGDMEMLDVEGVADIDPNYKFNQLLIH
Sbjct  252   VQPDIATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIH  311

Query  301   NNALSSMLMGSHSSIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLKN  360
             NNALSS+LMGSH++IEPEKVSLLYG+NGG  A+HDWNATVGYK+QQGNNVAT+IN H+KN
Sbjct  312   NNALSSVLMGSHNGIEPEKVSLLYGGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKN  371

Query  361   GSGLVIAGNGNGINNPSFYLYKTDQLTGLEQALSQEEIQNKVDFMELLAQNNARLDNLSE  420
             GSGLVIAG  +GINNPSFYLYK DQLTG ++ALSQEEIQNK++FME+LAQNNA+LDNLSE
Sbjct  372   GSGLVIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKINFMEFLAQNNAKLDNLSE  431

Query  421   EEKEKFQTEIGNFQKDPKAYLDSLGNDRIAFVSKKDQKHLALVTEFGNGELSYTLKDYGK  480
              EKEKF+TEI +FQKD+KAYLD+LGNDRIAFVSKKD KH AL+TEFGNG+LSYTLKDYGK
Sbjct  432   KEKEKFRTEIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGK  491

Query  481   KQDRALDRETKTTLQGNLKHDGVMFVNYSNFKYTNASKSPDEGIGATNGVSHLEANFSKV  540
             K D+ALDRE + TLQG+LKHDGVMFV+YSNFKYTNASK+P+ G+G TNGVSHLEA F KV
Sbjct  492   KADKALDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFDKV  551

Query  541   AVFNLPDLNGLAISSFARRNLEDKLIAKGLPPKDANKIIKDFLNSNKELLEKALDFNKAV  600
             AVFNLPDLN LAI+SF RRNLEDKL +KGL+ ++ANK+IKDFLNSNKEL+ KAL+FNKAV
Sbjct  552   AVFNLPDLNNLAITSFVRRNLEDKLATKGLSLQEANKLIKDFLNSNKELVGKALNFNKAV  611

Query  601   AEAKNTGNYDGVKKAQKDLEKSIRKRERLEQEITKKFENKSGNKNKMEAKVQANSQKDGI  660
             AEAKNTGNYD VKKAQKDLEKS++KRE+LE+E++KK+E+KSGNKNKMEAK QANSQKD I
Sbjct  612   AEAKNTGNYDEVKKAQKDLEKSLKKREHLEKEVAKKLESKSGNKNKMEAKSQANSQKDEI  671

Query  661   FKLINEEAHKEARIAAYAQNLKGIRRELSDKIENINKNLKDFDKSFDALKSGKNKDFSKA  720
             F LIN EA+++AR  AYAQNLKGI+RELSDK+ENINK+LKDF KSFD +K+GKNKDFSKA
Sbjct  672   FALINKEANRDARAIAYAQNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKA  731

Query  721   EETLKALESSVKDLGINPEWISKVenlnaalnefenGKNKDFSKVTQAKSDLENSIKDVL  780
             EETLKAL +SVKDLGINPEWISKVENLN+ALNEF NGKNKDFSKVTQAKSDLENSIKDV+
Sbjct  732   EETLKALKGSVKDLGINPEWISKVENLNTALNEFKNGKNKDFSKVTQAKSDLENSIKDVI  791

Query  781   INQEITDKVDNLNQAVLTAKAIGDFSGVEQALAELKNFSTNQ---------------KSD  825
             INQ ITDKVDNLNQAV  AKA GDFSGVEQALA+LKNFS  Q               +S+
Sbjct  792   INQKITDKVDNLNQAVSIAKATGDFSGVEQALADLKNFSKGQLAQQAQKNEDFNTGKNSE  851

Query  826   LQKSVKngvngtlvgnglSKTEATTLTKKFSDIkkelnekfanfnnnnnglknSTEPIYA  885
             + +SVKNGVNGTLVGNGLSK+EATTL+K+FSDI K   E      NNNN      EPIYA
Sbjct  852   IYQSVKNGVNGTLVGNGLSKAEATTLSKNFSDI-KKELEAKLGNFNNNNNNGLKNEPIYA  910

Query  886   KVNKKKTGQVASPEESIYTQVAKQVNAKIDQLNKIASASKGVG--------------DFS  931
             KVNKKK+GQ ASPEE+IY+QVAK+VNAKID+LN+IAS+  GVG              D+S
Sbjct  911   KVNKKKAGQAASPEEPIYAQVAKKVNAKIDRLNQIASGLGGVGQAAGFPLKRHDKVDDLS  970

Query  932   GLGQSDSSEPIYATIDDLGGPFPLSRLGRSDSPEPIYATIDLSKVGLSREQELTQKIGNL  991
              +G S + EPIYATIDDLGG+FPL R ++ D         DLSKVGLSR+QE       L
Sbjct  971   KVGLSANHEPIYATIDDLGGSFPLKRHDKVD---------DLSKVGLSRNQE-------L  1014

Query  992   TQKIGNLNQAVSEAKAGFFGNLEQTMDRLKDSTKKNVVNLWVESVKVVPASSQAKLDNYA  1051
             +QKI+NLNQAVSEAKAGFFGNLEQT+D LKDSTK N VNLW ES K VPAS  AKLDNYA
Sbjct  1015  AQKIDNLNQAVSEAKAGFFGNLEQTIDNLKDSTKYNSVNLWAESAKKVPASLSAKLDNYA  1074

Query  1052  TNSHTRINSNVKNGTINEKAIGMLTQKNPEWLKLVNDKIVAHNVGSAPLSAYDKIGFNQK  1111
              NSHTRINSNVKNG+INEKA GMLTQKNPEWLKLVNDKIVAHNVGS PLS YDKIGFNQK
Sbjct  1075  INSHTRINSNVKNGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQK  1134

Query  1112  NMKDYSDSFKFSTKLNNAVKNIKSGFKQLLTDCISAGSY----SPKKAEYGV----TKSG  1163
             NMKDYSDSFKFSTKLNNAVK+ KSGF ++L++ +S++SY    +  +AE G+    TK+G
Sbjct  1135  NMKDYSDSFKFSTKLNNAVKDTKSGFTRFLANAFSTASYYYFLAGENAEHGIKNVNTKGG  1194

Query  1164  FQKS  1167
             FQKS
Sbjct  1195  FQKS  1198

40) HPPC18_02620 in NC_017742


> AY330637|20|G20|37811806|AAR03881.1|Helicobacter_pylori_Ca52|+|21859..25455|cagA|HP0547|CagA
Length=1198

 Score = 1345 bits (5105),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 896/1188 (76%), Positives = 1039/1188 (88%), Gaps = 41/1188 (3%)

Query  1     MANETINQTKKPDQTPSQTAFNPQQFIGSIQVAFIKLGSAVASFDPDQKPIVDKNDRDNR  60
             M+NETINQ     Q  +++AFNPQQFI ++QVAF+K+++AVAS+DPDQKPIVDKNDRDNR
Sbjct  17    MTNETINQ-----QPQTEAAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNR  71

Query  61    QAFNGISQLREEYANKAIKNPTKKNQYFSDFINGsndlinknnlididssTKSFEKFGDQ  120
             QAF+GISQLREEY+NKAIKNPTKKNQYFSDFI+ SNDLINK+NL+D++SSTKSF+KFGDQ
Sbjct  72    QAFEGISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNLVDVESSTKSFQKFGDQ  131

Query  121   RYRIFVNWVSHQ-DPSKINTQKIRNFMENIIQPPISDDKEKAEFLKSAKQAFAGIIIGNQ  179
             RY+IF +WVSHQ DPSKINT+ IRNFMENIIQPPI+DDKEKAEFLKSAKQAFAGIIIGNQ
Sbjct  132   RYQIFTSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQAFAGIIIGNQ  191

Query  180   IQSDEKFMGVFGESLKERQEAEKNGDPVGGDWLDIFLSLVFGKEQSSDLKETLNQEPRPN  239
             I++D+KFMGVF+ESLKERQEAEKNG+P GGDWLDIFLS+VF K QSSDLKETL+QEP P+
Sbjct  192   IRTDQKFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSFVFNKKQSSDLKETLDQEPVPH  251

Query  240   VGQNIASTPTPIQGLPPEARDLLDKRSDFSKFTLGDMEMLDVEGIADIDPNYKFNQLVVH  299
             V  +IA+T T IQGLPPEARDLLD R++FSKFTLGDMEMLDVEG+ADIDPNYKFNQL++H
Sbjct  252   VQPDIATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIH  311

Query  300   NNALSSMLMGSHSDIKPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINVHLKN  359
             NNALSS+LMGSH++I PEKVSLLYG+NGG  A+HDWNATVGYK+QQGNNVAT+INVH+KN
Sbjct  312   NNALSSVLMGSHNGIEPEKVSLLYGGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKN  371

Query  360   GSGLVITGNGSGINNPSFYLYKKDQLTGLEQALSQEEIQNKVGFMELLAQNNARLDNLSE  419
             GSGLVI+G   GINNPSFYLYK DQLTG ++ALSQEEIQNK+ FME+LAQNNA+LDNLSE
Sbjct  372   GSGLVIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKINFMEFLAQNNAKLDNLSE  431

Query  420   EEKEKFQTEIGNFQKDPKAYLDALGKDQIAFVSQKDPKHLALVTELGNGELSYTLKDYGK  479
              EKEKF+TEI +FQKD+KAYLDALG+D+IAFVS+KD KH AL+TE+GNG+LSYTLKDYGK
Sbjct  432   KEKEKFRTEIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGK  491

Query  480   RQDRALDRETKTTLQGNLKHDGVMFVNYSNFKYTNASKSPNEGIGATNGVSHLEANFSKV  539
             + D+ALDRE + TLQG+LKHDGVMFV+YSNFKYTNASK+PN G+G TNGVSHLEA F KV
Sbjct  492   KADKALDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFDKV  551

Query  540   AVFNLSKLNGLAIFSFARQNLEGKLIAKGLNGKEANKLIKDFLNSNEELVGKALDFNKAV  599
             AVFNL+ LN LAI SF R+NLE+KL +KGL+ +EANKLIKDFLNSN ELVGKAL+FNKAV
Sbjct  552   AVFNLPDLNNLAITSFVRRNLEDKLATKGLSLQEANKLIKDFLNSNKELVGKALNFNKAV  611

Query  600   AEAKNTGNYDGVKKTQKDLEKSIRKRERLEKEITKKFESKSGNKNKMEAKAQANSQKDEV  659
             AEAKNTGNYD VKK+QKDLEKS++KRE+LEKE++KK+ESKSGNKNKMEAK+QANSQKDE+
Sbjct  612   AEAKNTGNYDEVKKAQKDLEKSLKKREHLEKEVAKKLESKSGNKNKMEAKSQANSQKDEI  671

Query  660   FKLINEEAHKEARIATYTQNLEGIGRELSDKIENINKNLKDFGESFDALKSGKNKDFSKV  719
             F LIN EA+++AR  +Y+QNL GI RELSDK+ENINK+LKDF+ SFD +K+GKNKDFSK 
Sbjct  672   FALINKEANRDARAIAYAQNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKA  731

Query  720   EETLKALESSVKDLGI-PEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSIKDAI  778
             EETLKAL +SVKDLGI PEWISKVENLN+ALNEFKNGKNKDFSKVTQAKSDLENSIKD I
Sbjct  732   EETLKALKGSVKDLGINPEWISKVENLNTALNEFKNGKNKDFSKVTQAKSDLENSIKDVI  791

Query  779   INQEITDKVGNLNQAVLIAKAIGDFSGVDQMLAELKNFSTDQ--KLDQKNESFNVGKNSD  836
             INQ ITDKV+NLNQAV IAKA GDFSGV+Q LA+LKNFS +Q  +  QKNE FN GKNS+
Sbjct  792   INQKITDKVDNLNQAVSIAKATGDFSGVEQALADLKNFSKGQLAQQAQKNEDFNTGKNSE  851

Query  837   LQKSVKngvngtlvgnglSKTEATTLTKKISDIKKELnekfanfnsnnngfknnTEPIYA  896
             + +SVKNGVNGTLVGNGLSK+EATTL+K++SDIKKEL E      +NNN    + EPIYA
Sbjct  852   IYQSVKNGVNGTLVGNGLSKAEATTLSKNFSDIKKEL-EAKLGNFNNNNNNGLKNEPIYA  910

Query  897   KVNKKKTGQVVSPEESIYDQLAKDVKAKIDKLNKIASASKGVG--------------DFS  942
             KVNKKK+GQ  SPEE+IY Q+AK V+AKID+LN+IAS+  GVG              D+S
Sbjct  911   KVNKKKAGQAASPEEPIYAQVAKKVNAKIDRLNQIASGLGGVGQAAGFPLKRHDKVDDLS  970

Query  943   GLGRSDSSEPIYATIDDLGGPFP---------LNKVGLSREQKLTQEIGNLNQAVSEAKA  993
              +G S + EPIYATIDDLGG+FP         L+KVGLSR+Q L+Q I+NLNQAVSEAKA
Sbjct  971   KVGLSANHEPIYATIDDLGGSFPLKRHDKVDDLSKVGLSRNQELAQKIDNLNQAVSEAKA  1030

Query  994   CSFNNLEQTMHRLKDSTKKNVVNLWVESAKEVPAILQEKLDNYATNSHVHINSNVKNGTI  1053
               F NLEQT++ LKDSTK N VNLW ESAK VPA L  KLDNYA NSH +INSNVKNG+I
Sbjct  1031  GFFGNLEQTIDNLKDSTKYNSVNLWAESAKKVPASLSAKLDNYAINSHTRINSNVKNGAI  1090

Query  1054  NEKATGMLTQKNPEWLKLVNDKIVAHNVGSAPLSDYDKIGFNQKNMKGYSDSFKFSTKLS  1113
             NEKATGMLTQKNPEWLKLVNDKIVAHNVGS PLS+YDKIGFNQKNMK+YSDSFKFSTKL+
Sbjct  1091  NEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFSTKLN  1150

Query  1114  NAVKNIKFGFMQYLTHCFS-AGFY---SPKKAEYGV----TKSGFQKS  1153
             NAVK+ K GF ++L++ FS A++Y   +  +AE G+    TK+GFQKS
Sbjct  1151  NAVKDTKSGFTRFLANAFSTASYYYFLAGENAEHGIKNVNTKGGFQKS  1198

41) K747_06810 in NC_021215


> AY330637|20|G20|37811806|AAR03881.1|Helicobacter_pylori_Ca52|+|21859..25455|cagA|HP0547|CagA
Length=1198

 Score = 1344 bits (5100),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 915/1182 (78%), Positives = 1049/1182 (89%), Gaps = 41/1182 (3%)

Query  21    FVPQRFINNLQVAFIKVDSAVASFDPDQKPIVDKNDRDNRQAFEKISQLREEYankaikn  80
             F PQ+FINNLQVAF+KVD+AVAS+DPDQKPIVDKNDRDNRQAFE ISQLREEY+NKAIKN
Sbjct  32    FNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNRQAFEGISQLREEYSNKAIKN  91

Query  81    pakknQYFSDFINKSNDLINKDNLIDVDSSVESFKKFGDQRYQIFTSWVSLQKDPSEINT  140
             P+KKNQYFSDFI+KSNDLINKDNL+DV+SS  SF+KFGDQRYQIFTSWVS Q+DPS INT
Sbjct  92    PTKKNQYFSDFIDKSNDLINKDNLVDVESSTKSFQKFGDQRYQIFTSWVSHQNDPSKINT  151

Query  141   QQIRNFMENIIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSDQKFMGVFDESLKERQE  200
             + IRNFMENIIQPPI+DDKEKAEFL+SAKQ+FAGIIIGNQIR+DQKFMGVFDESLKERQE
Sbjct  152   RSIRNFMENIIQPPIPDDKEKAEFLKSAKQAFAGIIIGNQIRTDQKFMGVFDESLKERQE  211

Query  201   AEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLHQEPRPDFEQNLATTTTDIQGLPPEAR  260
             AEKN+ P+GGDWLDIFLSFVFNKKQSSDLKETL+QEP P+ + ++ATTTTDIQGLPPEAR
Sbjct  212   AEKNGGPTGGDWLDIFLSFVFNKKQSSDLKETLDQEPVPHVQPDIATTTTDIQGLPPEAR  271

Query  261   DLLDERGNFSKFTLGDMEMLDVEGVADKNPNYKFNQLLIHNNALSSVLMGGHSNIEPEKV  320
             DLLDERGNFSKFTLGDMEMLDVEGVAD +PNYKFNQLLIHNNALSSVLMG+H+ IEPEKV
Sbjct  272   DLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALSSVLMGSHNGIEPEKV  331

Query  321   SLLYGDNGGPEARHDWNATVGYKNQQGSNVATLINAHLNNGSGLIIAGNENGIKNPSFYL  380
             SLLYG+NGG  A+HDWNATVGYK+QQG+NVAT+IN H++NGSGL+IAG E+GI+NPSFYL
Sbjct  332   SLLYGGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKNGSGLVIAGGEKGINNPSFYL  391

Query  381   YKEDQLTGLKQAMSQEEIQNKVDFMEFLAKNNAKLDNLSEKEKEKFQTEIGNFQKDRKAY  440
             YKEDQLTG ++A+SQEEIQNK++FMEFLA+NNAKLDNLSEKEKEKF+TEI +FQKD KAY
Sbjct  392   YKEDQLTGSQRALSQEEIQNKINFMEFLAQNNAKLDNLSEKEKEKFRTEIEDFQKDSKAY  451

Query  441   LDALGNDHIAFVSKKDPKHLALVTEFGNGEVSYTLKDYGKKQDKALDGEVKTTLQGSLKY  500
             LDALGND+IAFVSKKD KH AL+TEFGNG++SYTLKDYGKK DKALD E + TLQGSLK 
Sbjct  452   LDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGKKADKALDREKNVTLQGSLKH  511

Query  501   DGVMFVDYSNFKYTNASKSPDKGVGATNGVSHLEANFSKVAVFNLPNLNNLAITNHIRRD  560
             DGVMFVDYSNFKYTNASK+P+KGVG TNGVSHLEA F KVAVFNLP+LNNLAIT+ +RR+
Sbjct  512   DGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFDKVAVFNLPDLNNLAITSFVRRN  571

Query  561   LEDKLLAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAVAEAKNTGNYDEVKKAQKDLE  620
             LEDKL +KGLS QEANKLIKDFLNSNKE+VGK  NFNKAVAEAKNTGNYDEVKKAQKDLE
Sbjct  572   LEDKLATKGLSLQEANKLIKDFLNSNKELVGKALNFNKAVAEAKNTGNYDEVKKAQKDLE  631

Query  621   KSIrkrehlekevvkkleSRNDNKNRMEAKAQANSQKDKIFALINKEASKEARAAAFDPN  680
             KS++KREHLEKEV KKLES+++NKN+MEAK+QANSQKD IFALINKEA+++ARA A+  N
Sbjct  632   KSLKKREHLEKEVAKKLESKSGNKNKMEAKSQANSQKDEIFALINKEANRDARAIAYAQN  691

Query  681   LKGIRSELSDKLENINKNLKDFGKSFDDFKNGKNNDFSKAEETLKALKDLVKDLGINPEW  740
             LKGI+ ELSDKLENINK+LKDF+KSFD+FKNGKN+DFSKAEETLKALK+ VKDLGINPEW
Sbjct  692   LKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKAEETLKALKGSVKDLGINPEW  751

Query  741   ISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVIINQKITDKVDNLNQAVSETK  800
             ISK+ENLN+ALN+FKNGKNKDFSKVTQAKSDLENSIKDVIINQKITDKVDNLNQAVS +K
Sbjct  752   ISKVENLNTALNEFKNGKNKDFSKVTQAKSDLENSIKDVIINQKITDKVDNLNQAVSIAK  811

Query  801   LTGDFSKVEQALAELKNLS-------------LDLGKNSDLQKSVKngvngtlvgnglSK  847
              TGDFS VEQALA+LKN+S             ++ GKNS++ +SVKNGVNGTLVGNGLSK
Sbjct  812   ATGDFSGVEQALADLKNFSKGQLAQQAQKNEDFNTGKNSEIYQSVKNGVNGTLVGNGLSK  871

Query  848   TEATTLTKNFSDIRKElneklfgnsnnnnnglknnTEPIYAQVNKKKTGQVASPEESIYA  907
             +EATTL+KNFSDI+KE        + NNNN    + EPIYA+VNKKK+GQ ASPEE+IYA
Sbjct  872   AEATTLSKNFSDIKKE--LEAKLGNFNNNNNNGLKNEPIYAKVNKKKAGQAASPEEPIYA  929

Query  908   QVAKKVSAKIDQLNEATSAIN----------RKIDRINKIasagkgvggfsgagrsasPE  957
             QVAKKV+AKID+LN+ +S++           ++ D+++ +          S  G SA+ E
Sbjct  930   QVAKKVNAKIDRLNQIASGLGGVGQAAGFPLKRHDKVDDL----------SKVGLSANHE  979

Query  958   PIYATIDFDEANQAGFPLRRSAAVNDLSKVGLSREQELTRRIGDLNQAVSEAKTGHFDNL  1017
             PIYATID      ++FPL+R   V+DLSKVGLSR+QEL+++I++LNQAVSEAK+G F+NL
Sbjct  980   PIYATID---DLGGSFPLKRHDKVDDLSKVGLSRNQELAQKIDNLNQAVSEAKAGFFGNL  1036

Query  1018  EQKIDELKDSTKKNALKLFIESAKQVPTGLQAKLDNYAANSHTRINSNVRNGAINERATG  1077
             EQ ID+LKDSTK N+++L  ESAK+VP++L AKLDNYA NSHTRINSNV+NGAINE+ATG
Sbjct  1037  EQTIDNLKDSTKYNSVNLWAESAKKVPASLSAKLDNYAINSHTRINSNVKNGAINEKATG  1096

Query  1078  MLTQKNPEWLKLVNNKIVAHNVGSAHLSEYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDI  1137
             MLTQKNPEWLKLVN+KIVAHNVGS  LSEYDKIGFNQKNMKDYSDSFKFSTKLNNAVKD 
Sbjct  1097  MLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDT  1156

Query  1138  KSNFVQFLTNTFSTGSYS--LMKANVEHGVKN-TTKSGFQKS  1176
             KS F +FL+N+FST+SY   L   N EHG+KN  TK+GFQKS
Sbjct  1157  KSGFTRFLANAFSTASYYYFLAGENAEHGIKNVNTKGGFQKS  1198

42) K748_08050 in NC_021882


> AY330637|20|G20|37811806|AAR03881.1|Helicobacter_pylori_Ca52|+|21859..25455|cagA|HP0547|CagA
Length=1198

 Score = 1344 bits (5100),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 915/1182 (78%), Positives = 1049/1182 (89%), Gaps = 41/1182 (3%)

Query  21    FVPQRFINNLQVAFIKVDSAVASFDPDQKPIVDKNDRDNRQAFEKISQLREEYankaikn  80
             F PQ+FINNLQVAF+KVD+AVAS+DPDQKPIVDKNDRDNRQAFE ISQLREEY+NKAIKN
Sbjct  32    FNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNRQAFEGISQLREEYSNKAIKN  91

Query  81    pakknQYFSDFINKSNDLINKDNLIDVDSSVESFKKFGDQRYQIFTSWVSLQKDPSEINT  140
             P+KKNQYFSDFI+KSNDLINKDNL+DV+SS  SF+KFGDQRYQIFTSWVS Q+DPS INT
Sbjct  92    PTKKNQYFSDFIDKSNDLINKDNLVDVESSTKSFQKFGDQRYQIFTSWVSHQNDPSKINT  151

Query  141   QQIRNFMENIIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSDQKFMGVFDESLKERQE  200
             + IRNFMENIIQPPI+DDKEKAEFL+SAKQ+FAGIIIGNQIR+DQKFMGVFDESLKERQE
Sbjct  152   RSIRNFMENIIQPPIPDDKEKAEFLKSAKQAFAGIIIGNQIRTDQKFMGVFDESLKERQE  211

Query  201   AEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLHQEPRPDFEQNLATTTTDIQGLPPEAR  260
             AEKN+ P+GGDWLDIFLSFVFNKKQSSDLKETL+QEP P+ + ++ATTTTDIQGLPPEAR
Sbjct  212   AEKNGGPTGGDWLDIFLSFVFNKKQSSDLKETLDQEPVPHVQPDIATTTTDIQGLPPEAR  271

Query  261   DLLDERGNFSKFTLGDMEMLDVEGVADKNPNYKFNQLLIHNNALSSVLMGGHSNIEPEKV  320
             DLLDERGNFSKFTLGDMEMLDVEGVAD +PNYKFNQLLIHNNALSSVLMG+H+ IEPEKV
Sbjct  272   DLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALSSVLMGSHNGIEPEKV  331

Query  321   SLLYGDNGGPEARHDWNATVGYKNQQGSNVATLINAHLNNGSGLIIAGNENGIKNPSFYL  380
             SLLYG+NGG  A+HDWNATVGYK+QQG+NVAT+IN H++NGSGL+IAG E+GI+NPSFYL
Sbjct  332   SLLYGGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKNGSGLVIAGGEKGINNPSFYL  391

Query  381   YKEDQLTGLKQAMSQEEIQNKVDFMEFLAKNNAKLDNLSEKEKEKFQTEIGNFQKDRKAY  440
             YKEDQLTG ++A+SQEEIQNK++FMEFLA+NNAKLDNLSEKEKEKF+TEI +FQKD KAY
Sbjct  392   YKEDQLTGSQRALSQEEIQNKINFMEFLAQNNAKLDNLSEKEKEKFRTEIEDFQKDSKAY  451

Query  441   LDALGNDHIAFVSKKDPKHLALVTEFGNGEVSYTLKDYGKKQDKALDGEVKTTLQGSLKY  500
             LDALGND+IAFVSKKD KH AL+TEFGNG++SYTLKDYGKK DKALD E + TLQGSLK 
Sbjct  452   LDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGKKADKALDREKNVTLQGSLKH  511

Query  501   DGVMFVDYSNFKYTNASKSPDKGVGATNGVSHLEANFSKVAVFNLPNLNNLAITNHIRRD  560
             DGVMFVDYSNFKYTNASK+P+KGVG TNGVSHLEA F KVAVFNLP+LNNLAIT+ +RR+
Sbjct  512   DGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFDKVAVFNLPDLNNLAITSFVRRN  571

Query  561   LEDKLLAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAVAEAKNTGNYDEVKKAQKDLE  620
             LEDKL +KGLS QEANKLIKDFLNSNKE+VGK  NFNKAVAEAKNTGNYDEVKKAQKDLE
Sbjct  572   LEDKLATKGLSLQEANKLIKDFLNSNKELVGKALNFNKAVAEAKNTGNYDEVKKAQKDLE  631

Query  621   KSIrkrehlekevvkkleSRNDNKNRMEAKAQANSQKDKIFALINKEASKEARAAAFDPN  680
             KS++KREHLEKEV KKLES+++NKN+MEAK+QANSQKD IFALINKEA+++ARA A+  N
Sbjct  632   KSLKKREHLEKEVAKKLESKSGNKNKMEAKSQANSQKDEIFALINKEANRDARAIAYAQN  691

Query  681   LKGIRSELSDKLENINKNLKDFGKSFDDFKNGKNNDFSKAEETLKALKDLVKDLGINPEW  740
             LKGI+ ELSDKLENINK+LKDF+KSFD+FKNGKN+DFSKAEETLKALK+ VKDLGINPEW
Sbjct  692   LKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKAEETLKALKGSVKDLGINPEW  751

Query  741   ISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVIINQKITDKVDNLNQAVSETK  800
             ISK+ENLN+ALN+FKNGKNKDFSKVTQAKSDLENSIKDVIINQKITDKVDNLNQAVS +K
Sbjct  752   ISKVENLNTALNEFKNGKNKDFSKVTQAKSDLENSIKDVIINQKITDKVDNLNQAVSIAK  811

Query  801   LTGDFSKVEQALAELKNLS-------------LDLGKNSDLQKSVKngvngtlvgnglSK  847
              TGDFS VEQALA+LKN+S             ++ GKNS++ +SVKNGVNGTLVGNGLSK
Sbjct  812   ATGDFSGVEQALADLKNFSKGQLAQQAQKNEDFNTGKNSEIYQSVKNGVNGTLVGNGLSK  871

Query  848   TEATTLTKNFSDIRKElneklfgnsnnnnnglknnTEPIYAQVNKKKTGQVASPEESIYA  907
             +EATTL+KNFSDI+KE        + NNNN    + EPIYA+VNKKK+GQ ASPEE+IYA
Sbjct  872   AEATTLSKNFSDIKKE--LEAKLGNFNNNNNNGLKNEPIYAKVNKKKAGQAASPEEPIYA  929

Query  908   QVAKKVSAKIDQLNEATSAIN----------RKIDRINKIasagkgvggfsgagrsasPE  957
             QVAKKV+AKID+LN+ +S++           ++ D+++ +          S  G SA+ E
Sbjct  930   QVAKKVNAKIDRLNQIASGLGGVGQAAGFPLKRHDKVDDL----------SKVGLSANHE  979

Query  958   PIYATIDFDEANQAGFPLRRSAAVNDLSKVGLSREQELTRRIGDLNQAVSEAKTGHFDNL  1017
             PIYATID      ++FPL+R   V+DLSKVGLSR+QEL+++I++LNQAVSEAK+G F+NL
Sbjct  980   PIYATID---DLGGSFPLKRHDKVDDLSKVGLSRNQELAQKIDNLNQAVSEAKAGFFGNL  1036

Query  1018  EQKIDELKDSTKKNALKLFIESAKQVPTGLQAKLDNYAANSHTRINSNVRNGAINERATG  1077
             EQ ID+LKDSTK N+++L  ESAK+VP++L AKLDNYA NSHTRINSNV+NGAINE+ATG
Sbjct  1037  EQTIDNLKDSTKYNSVNLWAESAKKVPASLSAKLDNYAINSHTRINSNVKNGAINEKATG  1096

Query  1078  MLTQKNPEWLKLVNNKIVAHNVGSAHLSEYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDI  1137
             MLTQKNPEWLKLVN+KIVAHNVGS  LSEYDKIGFNQKNMKDYSDSFKFSTKLNNAVKD 
Sbjct  1097  MLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDT  1156

Query  1138  KSNFVQFLTNTFSTGSYS--LMKANVEHGVKN-TTKSGFQKS  1176
             KS F +FL+N+FST+SY   L   N EHG+KN  TK+GFQKS
Sbjct  1157  KSGFTRFLANAFSTASYYYFLAGENAEHGIKNVNTKGGFQKS  1198

43) K749_01445 in NC_021216


> AY330637|20|G20|37811806|AAR03881.1|Helicobacter_pylori_Ca52|+|21859..25455|cagA|HP0547|CagA
Length=1198

 Score = 1344 bits (5100),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 915/1182 (78%), Positives = 1049/1182 (89%), Gaps = 41/1182 (3%)

Query  21    FVPQRFINNLQVAFIKVDSAVASFDPDQKPIVDKNDRDNRQAFEKISQLREEYankaikn  80
             F PQ+FINNLQVAF+KVD+AVAS+DPDQKPIVDKNDRDNRQAFE ISQLREEY+NKAIKN
Sbjct  32    FNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNRQAFEGISQLREEYSNKAIKN  91

Query  81    pakknQYFSDFINKSNDLINKDNLIDVDSSVESFKKFGDQRYQIFTSWVSLQKDPSEINT  140
             P+KKNQYFSDFI+KSNDLINKDNL+DV+SS  SF+KFGDQRYQIFTSWVS Q+DPS INT
Sbjct  92    PTKKNQYFSDFIDKSNDLINKDNLVDVESSTKSFQKFGDQRYQIFTSWVSHQNDPSKINT  151

Query  141   QQIRNFMENIIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSDQKFMGVFDESLKERQE  200
             + IRNFMENIIQPPI+DDKEKAEFL+SAKQ+FAGIIIGNQIR+DQKFMGVFDESLKERQE
Sbjct  152   RSIRNFMENIIQPPIPDDKEKAEFLKSAKQAFAGIIIGNQIRTDQKFMGVFDESLKERQE  211

Query  201   AEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLHQEPRPDFEQNLATTTTDIQGLPPEAR  260
             AEKN+ P+GGDWLDIFLSFVFNKKQSSDLKETL+QEP P+ + ++ATTTTDIQGLPPEAR
Sbjct  212   AEKNGGPTGGDWLDIFLSFVFNKKQSSDLKETLDQEPVPHVQPDIATTTTDIQGLPPEAR  271

Query  261   DLLDERGNFSKFTLGDMEMLDVEGVADKNPNYKFNQLLIHNNALSSVLMGGHSNIEPEKV  320
             DLLDERGNFSKFTLGDMEMLDVEGVAD +PNYKFNQLLIHNNALSSVLMG+H+ IEPEKV
Sbjct  272   DLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALSSVLMGSHNGIEPEKV  331

Query  321   SLLYGDNGGPEARHDWNATVGYKNQQGSNVATLINAHLNNGSGLIIAGNENGIKNPSFYL  380
             SLLYG+NGG  A+HDWNATVGYK+QQG+NVAT+IN H++NGSGL+IAG E+GI+NPSFYL
Sbjct  332   SLLYGGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKNGSGLVIAGGEKGINNPSFYL  391

Query  381   YKEDQLTGLKQAMSQEEIQNKVDFMEFLAKNNAKLDNLSEKEKEKFQTEIGNFQKDRKAY  440
             YKEDQLTG ++A+SQEEIQNK++FMEFLA+NNAKLDNLSEKEKEKF+TEI +FQKD KAY
Sbjct  392   YKEDQLTGSQRALSQEEIQNKINFMEFLAQNNAKLDNLSEKEKEKFRTEIEDFQKDSKAY  451

Query  441   LDALGNDHIAFVSKKDPKHLALVTEFGNGEVSYTLKDYGKKQDKALDGEVKTTLQGSLKY  500
             LDALGND+IAFVSKKD KH AL+TEFGNG++SYTLKDYGKK DKALD E + TLQGSLK 
Sbjct  452   LDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGKKADKALDREKNVTLQGSLKH  511

Query  501   DGVMFVDYSNFKYTNASKSPDKGVGATNGVSHLEANFSKVAVFNLPNLNNLAITNHIRRD  560
             DGVMFVDYSNFKYTNASK+P+KGVG TNGVSHLEA F KVAVFNLP+LNNLAIT+ +RR+
Sbjct  512   DGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFDKVAVFNLPDLNNLAITSFVRRN  571

Query  561   LEDKLLAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAVAEAKNTGNYDEVKKAQKDLE  620
             LEDKL +KGLS QEANKLIKDFLNSNKE+VGK  NFNKAVAEAKNTGNYDEVKKAQKDLE
Sbjct  572   LEDKLATKGLSLQEANKLIKDFLNSNKELVGKALNFNKAVAEAKNTGNYDEVKKAQKDLE  631

Query  621   KSIrkrehlekevvkkleSRNDNKNRMEAKAQANSQKDKIFALINKEASKEARAAAFDPN  680
             KS++KREHLEKEV KKLES+++NKN+MEAK+QANSQKD IFALINKEA+++ARA A+  N
Sbjct  632   KSLKKREHLEKEVAKKLESKSGNKNKMEAKSQANSQKDEIFALINKEANRDARAIAYAQN  691

Query  681   LKGIRSELSDKLENINKNLKDFGKSFDDFKNGKNNDFSKAEETLKALKDLVKDLGINPEW  740
             LKGI+ ELSDKLENINK+LKDF+KSFD+FKNGKN+DFSKAEETLKALK+ VKDLGINPEW
Sbjct  692   LKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKAEETLKALKGSVKDLGINPEW  751

Query  741   ISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVIINQKITDKVDNLNQAVSETK  800
             ISK+ENLN+ALN+FKNGKNKDFSKVTQAKSDLENSIKDVIINQKITDKVDNLNQAVS +K
Sbjct  752   ISKVENLNTALNEFKNGKNKDFSKVTQAKSDLENSIKDVIINQKITDKVDNLNQAVSIAK  811

Query  801   LTGDFSKVEQALAELKNLS-------------LDLGKNSDLQKSVKngvngtlvgnglSK  847
              TGDFS VEQALA+LKN+S             ++ GKNS++ +SVKNGVNGTLVGNGLSK
Sbjct  812   ATGDFSGVEQALADLKNFSKGQLAQQAQKNEDFNTGKNSEIYQSVKNGVNGTLVGNGLSK  871

Query  848   TEATTLTKNFSDIRKElneklfgnsnnnnnglknnTEPIYAQVNKKKTGQVASPEESIYA  907
             +EATTL+KNFSDI+KE        + NNNN    + EPIYA+VNKKK+GQ ASPEE+IYA
Sbjct  872   AEATTLSKNFSDIKKE--LEAKLGNFNNNNNNGLKNEPIYAKVNKKKAGQAASPEEPIYA  929

Query  908   QVAKKVSAKIDQLNEATSAIN----------RKIDRINKIasagkgvggfsgagrsasPE  957
             QVAKKV+AKID+LN+ +S++           ++ D+++ +          S  G SA+ E
Sbjct  930   QVAKKVNAKIDRLNQIASGLGGVGQAAGFPLKRHDKVDDL----------SKVGLSANHE  979

Query  958   PIYATIDFDEANQAGFPLRRSAAVNDLSKVGLSREQELTRRIGDLNQAVSEAKTGHFDNL  1017
             PIYATID      ++FPL+R   V+DLSKVGLSR+QEL+++I++LNQAVSEAK+G F+NL
Sbjct  980   PIYATID---DLGGSFPLKRHDKVDDLSKVGLSRNQELAQKIDNLNQAVSEAKAGFFGNL  1036

Query  1018  EQKIDELKDSTKKNALKLFIESAKQVPTGLQAKLDNYAANSHTRINSNVRNGAINERATG  1077
             EQ ID+LKDSTK N+++L  ESAK+VP++L AKLDNYA NSHTRINSNV+NGAINE+ATG
Sbjct  1037  EQTIDNLKDSTKYNSVNLWAESAKKVPASLSAKLDNYAINSHTRINSNVKNGAINEKATG  1096

Query  1078  MLTQKNPEWLKLVNNKIVAHNVGSAHLSEYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDI  1137
             MLTQKNPEWLKLVN+KIVAHNVGS  LSEYDKIGFNQKNMKDYSDSFKFSTKLNNAVKD 
Sbjct  1097  MLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDT  1156

Query  1138  KSNFVQFLTNTFSTGSYS--LMKANVEHGVKN-TTKSGFQKS  1176
             KS F +FL+N+FST+SY   L   N EHG+KN  TK+GFQKS
Sbjct  1157  KSGFTRFLANAFSTASYYYFLAGENAEHGIKNVNTKGGFQKS  1198

44) HPSH417_04540 in NC_017739


> AY330637|20|G20|37811806|AAR03881.1|Helicobacter_pylori_Ca52|+|21859..25455|cagA|HP0547|CagA
Length=1198

 Score = 1130 bits (4285),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 780/1231 (64%), Positives = 939/1231 (77%), Gaps = 180/1231 (14%)

Query  1     MANETINQPDQTPSQTAFDSQQFINNLQVAFIKVDSAVASFDPDQKPIVDKNDRDNRQAF  60
             M+NETINQ  Q  +++AF++QQFINNLQVAF+KVD+AVAS+DPDQKPIVDKNDRDNRQAF
Sbjct  17    MTNETINQ--QPQTEAAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNRQAF  74

Query  61    DGISQLREEYANKAIKNPTKKNQYFSDFISKSNDLINKDNLIDTDSSTKSFQKFGTERYQ  120
             +GISQLREEY+NKAIKNPTKKNQYFSDFI KSNDLINKDNL+D +SSTKSFQKFG +RYQ
Sbjct  75    EGISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNLVDVESSTKSFQKFGDQRYQ  134

Query  121   IFMNWVSHQKDPSKINTQKIRNFMENIIQPPISDDKEKAEFLRSAKQSFAGIIIGNQTRS  180
             IF +WVSHQ+DPSKINT+ IRNFMENIIQPPI+DDKEKAEFL+SAKQ+FAGIIIGNQ R+
Sbjct  135   IFTSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQAFAGIIIGNQIRT  194

Query  181   DEKFMGVFGesldesldesldesldesldesldesldesldesldeslKERQEAENNGDP  240
             D+KFMGVF+ESL                                    KERQEAE+NG+P
Sbjct  195   DQKFMGVFDESL------------------------------------KERQEAEKNGGP  218

Query  241   -GGDWLDTFLSFAFDKKQSSDLKETLNQEPRPNVGQNIATTTTDIQGLPPEARDLLDERG  299
              GGDWLD FLSF F+KKQSSDLKETL+QEP P+V  +IATTTTDIQGLPPEARDLLDERG
Sbjct  219   TGGDWLDIFLSFVFNKKQSSDLKETLDQEPVPHVQPDIATTTTDIQGLPPEARDLLDERG  278

Query  300   NFPKFTLGD-------------PNYKFNQLVVHNNALSSMLMGSHSNMEPEKVSLLYGDN  346
             NF+KFTLGD             PNYKFNQL++HNNALSS+LMGSH+ +EPEKVSLLYG+N
Sbjct  279   NFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALSSVLMGSHNGIEPEKVSLLYGGN  338

Query  347   GGPEARHDWNATVGYKNQQGNNVATLINAHLKNGSGLIIAGNENGINNPSFYLYKKDQLT  406
             GG  A+HDWNATVGYK+QQGNNVAT+IN H+KNGSGL+IAG E+GINNPSFYLYK DQLT
Sbjct  339   GGFGAKHDWNATVGYKDQQGNNVATIINVHMKNGSGLVIAGGEKGINNPSFYLYKEDQLT  398

Query  407   GLEQALSQEEIQNKLGFMEFLAQNSARHVGLNNLSKEEKEKFQTEIGNFQKDPKPYLDSL  466
             G ++ALSQEEIQNK+ FMEFLAQN+A+   L+NLS  EKEKF+TEI +FQKD+K+YLD+L
Sbjct  399   GSQRALSQEEIQNKINFMEFLAQNNAK---LDNLSEKEKEKFRTEIEDFQKDSKAYLDAL  455

Query  467   GNDRIAFVSKKDSKHLALVTEFGNGELSYTLKDYGKKPDRALDRETKTTLQGNLKHDGVM  526
             GNDRIAFVSKKD+KH AL+TEFGNG+LSYTLKDYGKK+D+ALDRE + TLQG+LKHDGVM
Sbjct  456   GNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGKKADKALDREKNVTLQGSLKHDGVM  515

Query  527   FVNYSNFKYTNASKSPNEGIGATNGVSHLEANFSKVAVFNLASSNELTISNFAKRNLEDK  586
             FV+YSNFKYTNASK+PN G+G TNGVSHLEA F KVAVFNL+  N+L+I++F +RNLEDK
Sbjct  516   FVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFDKVAVFNLPDLNNLAITSFVRRNLEDK  575

Query  587   LIAKGLSGKESNKLIKDFLNSNKELLEKSLNFNKAVAEAKNTGNYGGVKKAQKDLEKSIR  646
             L +KGLS +E+NKLIKDFLNSNKEL+ K+LNFNKAVAEAKNTGNY+ VKKAQKDLEKS++
Sbjct  576   LATKGLSLQEANKLIKDFLNSNKELVGKALNFNKAVAEAKNTGNYDEVKKAQKDLEKSLK  635

Query  647   KRERLEQEITKQFESKSGNKNKMEAKAQANSQKDEVFKLINEGAYKEARNIAYAQNLKGI  706
             KRE+LE+E++K++ESKSGNKNKMEAK+QANSQKDE+F LIN  A ++AR IAYAQNLKGI
Sbjct  636   KREHLEKEVAKKLESKSGNKNKMEAKSQANSQKDEIFALINKEANRDARAIAYAQNLKGI  695

Query  707   RRELRELFDKIENLNKNL---------------KDFNKSFDALKS---------------  736
             +REL    DK+EN+NK+L               KDF+K+ ++LK+               
Sbjct  696   KRELS---DKLENINKDLKDFSKSFDEFKNGKNKDFSKAEETLKALKGSVKDLGINPEWI  752

Query  737   ---------------GKNKDFSKAEETLKALESSVKDLGIPEW-TSKVENLNAALNEFKN  780
                            GKNKDFSK  ++   LE+S+KD+ I +  T KV+NLN A++  K 
Sbjct  753   SKVENLNTALNEFKNGKNKDFSKVTQAKSDLENSIKDVIINQKITDKVDNLNQAVSIAKA  812

Query  781   GKNKDFSKVTQAKSDLE-----------------NSIKDVIINQEITDKVDNLNQAVSIA  823
                 DFS V QA +DL                  N+ K+  I Q + + V+    + +++
Sbjct  813   --TGDFSGVEQALADLKNFSKGQLAQQAQKNEDFNTGKNSEIYQSVKNGVNGTLVGNGLS  870

Query  824   KATG-----DFSGLDQAL---------------------AELKNFNVGKNSDRSEPIYAT  857
             KA +     +FS++ + L                     A +++ + G+ +   EPIYA 
Sbjct  871   KAEATTLSKNFSDIKKELEAKLGNFNNNNNNGLKNEPIYAKVNKKKAGQAASPEEPIYAQ  930

Query  858   ID---------------DLDGSS-----PLKRYAKVDDLSKAGRLDSPEPIYATIDDLGG  897
             +                +L+G +     PLKR  KVDDLSK G   + EPIYATIDDLGG
Sbjct  931   VAKKVNAKIDRLNQIASGLGGVGQAAGFPLKRHDKVDDLSKVGLSANHEPIYATIDDLGG  990

Query  898   PFSLKKYAKVDDLTKVGFSREQELTQKIGNLNQAVSEAKAGFFGNLEQTMDRLKDSTKKN  957
             +F+LK+  KVDDL+KVG+SR+QEL+QKI+NLNQAVSEAKAGFFGNLEQT+D LKDSTK N
Sbjct  991   SFPLKRHDKVDDLSKVGLSRNQELAQKIDNLNQAVSEAKAGFFGNLEQTIDNLKDSTKYN  1050

Query  958   VVNLWFEGARKVPISLPSSQAKLDNYATNSHTRINSNVKNGTINEKAIGMLTQKNPEWLK  1017
              VNLW E+A+KVP SL+   AKLDNYA NSHTRINSNVKNG+INEKA GMLTQKNPEWLK
Sbjct  1051  SVNLWAESAKKVPASLS---AKLDNYAINSHTRINSNVKNGAINEKATGMLTQKNPEWLK  1107

Query  1018  LVNDKIVAHNVGSTPLSDYDKIGFNQKNMKGYSDSFKFSTKLSNAVKNIKSGFEQLLTDC  1077
             LVNDKIVAHNVGS PLS+YDKIGFNQKNMK+YSDSFKFSTKL+NAVK+ KSGF ++L++ 
Sbjct  1108  LVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDTKSGFTRFLANA  1167

Query  1078  ISAGSY----SPKKAEYGV----TKSGFQKS  1100
             +S++SY    +  +AE G+    TK+GFQKS
Sbjct  1168  FSTASYYYFLAGENAEHGIKNVNTKGGFQKS  1198

45) HPSH169_04745 in NC_017740


> AY330637|20|G20|37811806|AAR03881.1|Helicobacter_pylori_Ca52|+|21859..25455|cagA|HP0547|CagA
Length=1198

 Score = 1116 bits (4230),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 769/1220 (64%), Positives = 926/1220 (76%), Gaps = 168/1220 (13%)

Query  1     MANETIDQTKNPDQTPSQTAFDSQQFINNLQVVFTKVDSAVASFDPDQKPIVDKNDKDNR  60
             M+NETI+Q     Q  +++AF++QQFINNLQV F KVD+AVAS+DPDQKPIVDKND+DNR
Sbjct  17    MTNETINQ-----QPQTEAAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNR  71

Query  61    QAFNGISQLREEYANKAIKNPTKKNQYFSDFISKSNDLINKDNLIDTDSSTKSFQKFGTE  120
             QAF+GISQLREEY+NKAIKNPTKKNQYFSDFI KSNDLINKDNL+D +SSTKSFQKFG +
Sbjct  72    QAFEGISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNLVDVESSTKSFQKFGDQ  131

Query  121   RYQIFMNWVSHQKDPSKINTQKIRNFMENIVQPPISDDKEKAEFLRSAKQSFAGIIIGNQ  180
             RYQIF +WVSHQ+DPSKINT+ IRNFMENI+QPPI+DDKEKAEFL+SAKQ+FAGIIIGNQ
Sbjct  132   RYQIFTSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQAFAGIIIGNQ  191

Query  181   IRSDEKFMGVFeesldesldesldesldesldesldesldeslKEKQEAQNNGDP-GGDW  239
             IR+D+KFMGVF+ESL                            KE+QEA++NG+P GGDW
Sbjct  192   IRTDQKFMGVFDESL----------------------------KERQEAEKNGGPTGGDW  223

Query  240   LDIFLSFAFDKKQSSDLKETLNQESRPNVEQNIATTPTPIQGLPLEARDLLDERGDFSKF  299
             LDIFLSF F+KKQSSDLKETL+QE+ P+V+ +IATT T IQGLP EARDLLDERG+FSKF
Sbjct  224   LDIFLSFVFNKKQSSDLKETLDQEPVPHVQPDIATTTTDIQGLPPEARDLLDERGNFSKF  283

Query  300   TLGD-------------PNYKFNQLVVHNNALSSMLMGSHGNIKPEKVSLLYGDNGGPEA  346
             TLGD             PNYKFNQL++HNNALSS+LMGSH  I PEKVSLLYG+NGG  A
Sbjct  284   TLGDMEMLDVEGVADIDPNYKFNQLLIHNNALSSVLMGSHNGIEPEKVSLLYGGNGGFGA  343

Query  347   RHDWNATVGYKNQQGNNVATLINAHLKNGSGLIIAGNENGINNPSFYLYKKDQLTGLEQA  406
             +HDWNATVGYK+QQGNNVAT+IN H+KNGSGL+IAG E+GINNPSFYLYK DQLTG ++A
Sbjct  344   KHDWNATVGYKDQQGNNVATIINVHMKNGSGLVIAGGEKGINNPSFYLYKEDQLTGSQRA  403

Query  407   LSQEEIQNKLGFMELLAQNNAKLDNLSKEEKEKFQTEIGNFQKDPKAYLDSLGNDRIAFV  466
             LSQEEIQNK+ FME+LAQNNAKLDNLS  EKEKF+TEI +FQKD+KAYLD+LGNDRIAFV
Sbjct  404   LSQEEIQNKINFMEFLAQNNAKLDNLSEKEKEKFRTEIEDFQKDSKAYLDALGNDRIAFV  463

Query  467   SKKDNKHLALVTEFGNGELSYTLKDYGKRQDRALDREIKTTLQGNLKDDGVMFVNYSNFK  526
             SKKD KH AL+TEFGNG+LSYTLKDYGK+ D+ALDRE + TLQG+LK+DGVMFV+YSNFK
Sbjct  464   SKKDTKHSALITEFGNGDLSYTLKDYGKKADKALDREKNVTLQGSLKHDGVMFVDYSNFK  523

Query  527   YTNASKSPNEGIGATNGVSHLEANFSKVAVFNLPKLNGLAVSSFARRNLENKLIAKGFPP  586
             YTNASK+PN G+G TNGVSHLEA F KVAVFNLP LN LA++SF RRNLE+KL +KG++ 
Sbjct  524   YTNASKNPNKGVGVTNGVSHLEAGFDKVAVFNLPDLNNLAITSFVRRNLEDKLATKGLSL  583

Query  587   KEASKIIKDFLNSNKELLGKALNFNKAVAEAKNTGNYGGVKKAQKDLEKSIRKRERLEKE  646
             +EA+K+IKDFLNSNKEL+GKALNFNKAVAEAKNTGNY+ VKKAQKDLEKS++KRE+LEKE
Sbjct  584   QEANKLIKDFLNSNKELVGKALNFNKAVAEAKNTGNYDEVKKAQKDLEKSLKKREHLEKE  643

Query  647   ITKQFESKSGNKNKMEAKAQANSQKDEIFKLINEGAYKEARIIAYDQNLKGIRRE-----  701
             ++K++ESKSGNKNKMEAK+QANSQKDEIF LIN  A ++AR IAY QNLKGI+RE     
Sbjct  644   VAKKLESKSGNKNKMEAKSQANSQKDEIFALINKEANRDARAIAYAQNLKGIKRELSDKL  703

Query  702   ------LREL--------------FDKIENLNKNLK-----------------DFGESFD  724
                   L+++              F K E+  K LK                 ++  +++
Sbjct  704   ENINKDLKDFSKSFDEFKNGKNKDFSKAEETLKALKGSVKDLGINPEWISKVENLNTALN  763

Query  725   ALKSGKNKDFSKAEETLKALESSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQ  784
              +K+GKNKDFSK  ++   LE+S+KD+ IN     KV+NLN A++  K     DFS V Q
Sbjct  764   EFKNGKNKDFSKVTQAKSDLENSIKDVIINQKITDKVDNLNQAVSIAKA--TGDFSGVEQ  821

Query  785   AKSDLE-----------------NSIKDVIINQEITDKVDNLNQAVSIAKATG-----DF  822
             A +DL                  N+ K+  I Q + + V+    + +++KA +     +F
Sbjct  822   ALADLKNFSKGQLAQQAQKNEDFNTGKNSEIYQSVKNGVNGTLVGNGLSKAEATTLSKNF  881

Query  823   SGLDQAL---------------------AELKNFNVGKNSDRSEPIYATID---------  852
             S++ + L                     A +++ + G+ +   EPIYA +          
Sbjct  882   SDIKKELEAKLGNFNNNNNNGLKNEPIYAKVNKKKAGQAASPEEPIYAQVAKKVNAKIDR  941

Query  853   ------DLDGSS-----PLKRYAKVDDLSKVGQSDSPEPIYA---NLGGSSPLKRYAKVD  898
                   +L+G +     PLKR  KVDDLSKVG S + EPIYA   +LGGS PLKR  KVD
Sbjct  942   LNQIASGLGGVGQAAGFPLKRHDKVDDLSKVGLSANHEPIYATIDDLGGSFPLKRHDKVD  1001

Query  899   DLSKVGLSREQELTQKIGNLNQAVSEAKAGSFGNLEQTMHGLKDSTKKNVVNLWFEGARK  958
             DLSKVGLSR+QEL+QKI+NLNQAVSEAKAG FGNLEQT++ LKDSTK N VNLW E+A+K
Sbjct  1002  DLSKVGLSRNQELAQKIDNLNQAVSEAKAGFFGNLEQTIDNLKDSTKYNSVNLWAESAKK  1061

Query  959   VPISLPSSQAKLDNYATNSHTRINSNVKNGTINEKAIGMLTQKNPEWLKLVNDKIVAHNV  1018
             VP SL+   AKLDNYA NSHTRINSNVKNG+INEKA GMLTQKNPEWLKLVNDKIVAHNV
Sbjct  1062  VPASLS---AKLDNYAINSHTRINSNVKNGAINEKATGMLTQKNPEWLKLVNDKIVAHNV  1118

Query  1019  GSTPLSDYDKIGFNQKDMKGYSDSFKFSTKLSNAVKNIKPGFVQCLTDCISAGSY----S  1074
             GS PLS+YDKIGFNQK+MK+YSDSFKFSTKL+NAVK+ K+GF + L++ +S++SY    +
Sbjct  1119  GSVPLSEYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDTKSGFTRFLANAFSTASYYYFLA  1178

Query  1075  PKKAEHGV----TKSGFQKS  1090
               +AEHG+    TK+GFQKS
Sbjct  1179  GENAEHGIKNVNTKGGFQKS  1198

46) HPSH_04215 in NC_010698


> AY330637|20|G20|37811806|AAR03881.1|Helicobacter_pylori_Ca52|+|21859..25455|cagA|HP0547|CagA
Length=1198

 Score = 1109 bits (4206),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 778/1211 (65%), Positives = 930/1211 (77%), Gaps = 155/1211 (12%)

Query  1     MANETINQTKNPDQTPNQTAFDPQQFINNLQVAFIKVDSAVASFDPDQKPIVDKNDRDNR  60
             M+NETINQ     Q   ++AF+PQQFINNLQVAF+KVD+AVAS+DPDQKPIVDKNDRDNR
Sbjct  17    MTNETINQ-----QPQTEAAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNR  71

Query  61    QAFNGISQLREEYankaiknpnkknQYFSDFINKSNDLINKDNLIDTDSSTKSFQKFGPE  120
             QAF+GISQLREEY+NKAIKNP KKNQYFSDFI+KSNDLINKDNL+D +SSTKSFQKFG +
Sbjct  72    QAFEGISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNLVDVESSTKSFQKFGDQ  131

Query  121   PYQIFMNWVSHQKDPSKINTQKIRDFMENIIQPPISDDKEKAEFLRSAKQSFAGIIIGNQ  180
              YQIF +WVSHQ+DPSKINT+ IR+FMENIIQPPI+DDKEKAEFL+SAKQ+FAGIIIGNQ
Sbjct  132   RYQIFTSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQAFAGIIIGNQ  191

Query  181   TRSDEKFMGVFGesldesldesldesldesldeslREKQEAGKNGDWLDIFLSFVFNKKQ  240
              R+D+KFMGVF+ESL E  +                EK+ +   GDWLDIFLSFVFNKKQ
Sbjct  192   IRTDQKFMGVFDESLKERQEA---------------EKNGGPTGGDWLDIFLSFVFNKKQ  236

Query  241   SSDLKETLNQEPRSNVEQNIATTPTPIQGLPPEARDLLDERGDFSKFTLGDMEMLDVE--  298
             SSDLKETL+QEP ++V+ +IATT T IQGLPPEARDLLDERG+FSKFTLGDMEMLDVE  
Sbjct  237   SSDLKETLDQEPVPHVQPDIATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGV  296

Query  299   -------RLNQLLIHNNALSSMLMGSHSNIKPEKVSLLYGDNGGPEARHDWNATVGYKNQ  351
                    ++NQLLIHNNALSS+LMGSH+ I PEKVSLLYG+NGG  A+HDWNATVGYK+Q
Sbjct  297   ADIDPNYKFNQLLIHNNALSSVLMGSHNGIEPEKVSLLYGGNGGFGAKHDWNATVGYKDQ  356

Query  352   QGNNVATLINAHLKNSSGLIIAGNENGINNPSFYLYKKDQLTGLEQALSQEEIQNKLGFM  411
             QGNNVAT+IN H+KN+SGL+IAG E+GINNPSFYLYK DQLTG ++ALSQEEIQNK+ FM
Sbjct  357   QGNNVATIINVHMKNGSGLVIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKINFM  416

Query  412   EFLAQNSARHVGLNNLSKEEKEKFQTEIGNFQKDPKAYLDTLGSDHIAFVSKKDQKHLAL  471
             EFLAQN+A+   L+NLS  EKEKF+TEI +FQKD+KAYLD+LG+D+IAFVSKKD KH AL
Sbjct  417   EFLAQNNAK---LDNLSEKEKEKFRTEIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSAL  473

Query  472   VTEFGNGELSYTLKDYGKKPDRALDRETKTTLQGNLKDDGVMFVNYSNFKYTNASKSPNE  531
             +TEFGNG+LSYTLKDYGKK+D+ALDRE + TLQG+LK+DGVMFV+YSNFKYTNASK+PN 
Sbjct  474   ITEFGNGDLSYTLKDYGKKADKALDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNK  533

Query  532   GIGATNGVSHLEANFSKVAVFNLPDLNGLAVSSFARRNLEDKLAAKGLSGKESNKIIKDF  591
             G+G TNGVSHLEA F KVAVFNLPDLN LA++SF RRNLEDKLA+KGLS +E+NK+IKDF
Sbjct  534   GVGVTNGVSHLEAGFDKVAVFNLPDLNNLAITSFVRRNLEDKLATKGLSLQEANKLIKDF  593

Query  592   LNSNKELLEKVLNFNKAVAEAKNTGNYGGVKKAQKDLEKSIRKRELLEKEVTKQFESKSG  651
             LNSNKEL+ K LNFNKAVAEAKNTGNY+ VKKAQKDLEKS++KRE LEKEV+K++ESKSG
Sbjct  594   LNSNKELVGKALNFNKAVAEAKNTGNYDEVKKAQKDLEKSLKKREHLEKEVAKKLESKSG  653

Query  652   NKNKMEAKAQANSQKDEIFKLINEGAYKEARIIAYAQNLKGIRREL--------REL---  700
             NKNKMEAK+QANSQKDEIF LIN  A ++AR IAYAQNLKGI+REL        ++L   
Sbjct  654   NKNKMEAKSQANSQKDEIFALINKEANRDARAIAYAQNLKGIKRELSDKLENINKDLKDF  713

Query  701   --------------FDKIGNINKNLK-----------------DFNQSFDALKSGKNKDF  729
                           F K  +  K LK                 ++N +++ +K+GKNKDF
Sbjct  714   SKSFDEFKNGKNKDFSKAEETLKALKGSVKDLGINPEWISKVENLNTALNEFKNGKNKDF  773

Query  730   SKVEETLKALKSSVKDLNINPEWISKVENLNVALNEFKNGKNKDFSKVTQAKSDLENSIK  789
             SKV ++   L +S+KD+ IN     KV+NLN A++  K     DFS V QA +DL N  K
Sbjct  774   SKVTQAKSDLENSIKDVIINQKITDKVDNLNQAVSIAKA--TGDFSGVEQALADLKNFSK  831

Query  790   DVHINQQI-------TDKVDNLNQAV-------LVAKA---------TGDFSGVEQALAG  826
             + ++ QQ        T+K  ++ Q+V       LV+++         + +FS++ + L +
Sbjct  832   G-QLAQQAQKNEDFNTGKNSEIYQSVKNGVNGTLVGNGLSKAEATTLSKNFSDIKKELEA  890

Query  827   ---------------------LKNFNVGKNSDRSEPIYATID---------------DLD  850
                                  +++ + G+ +   EPIYA +                +L+
Sbjct  891   KLGNFNNNNNNGLKNEPIYAKVNKKKAGQAASPEEPIYAQVAKKVNAKIDRLNQIASGLG  950

Query  851   GSS-----PLKRYAKVDDLSKVGQSDSPEPIYA---NLGGSSPLKRHAKVDDLSKVGLSR  902
             G +     PLKR  KVDDLSKVG S + EPIYA   +LGGS PLKRH KVDDLSKVGLSR
Sbjct  951   GVGQAAGFPLKRHDKVDDLSKVGLSANHEPIYATIDDLGGSFPLKRHDKVDDLSKVGLSR  1010

Query  903   EQELTQKIGNLNQAVSEAKAGSFGNLEQTMDGLKDSTKKNVVNLWFEGARKVPISLPSSQ  962
             +QEL+QKI+NLNQAVSEAKAG FGNLEQT+D LKDSTK N VNLW E+A+KVP SL+   
Sbjct  1011  NQELAQKIDNLNQAVSEAKAGFFGNLEQTIDNLKDSTKYNSVNLWAESAKKVPASLS---  1067

Query  963   AKLDNYATNSHTRINSNVKNGTVNEKATIMLTQKNPEWLKLVNDKIVAHNVGSTPLSDYD  1022
             AKLDNYA NSHTRINSNVKNG++NEKAT MLTQKNPEWLKLVNDKIVAHNVGS PLS+YD
Sbjct  1068  AKLDNYAINSHTRINSNVKNGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYD  1127

Query  1023  KIGFNQKNMKDYSDSFKFSIKLSNAVKNIKSGFVQCLTDCISAGSY----SPKKAEHGV-  1077
             KIGFNQKNMKDYSDSFKFS KL+NAVK+ KSGF + L++ +S++SY    +  +AEHG+ 
Sbjct  1128  KIGFNQKNMKDYSDSFKFSTKLNNAVKDTKSGFTRFLANAFSTASYYYFLAGENAEHGIK  1187

Query  1078  ---TKSGFQKS  1085
                TK+GFQKS
Sbjct  1188  NVNTKGGFQKS  1198

47) HPSH112_04285 in NC_017741


> AY330637|20|G20|37811806|AAR03881.1|Helicobacter_pylori_Ca52|+|21859..25455|cagA|HP0547|CagA
Length=1198

 Score = 1092 bits (4139),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 714/977 (74%), Positives = 852/977 (88%), Gaps = 28/977 (2%)

Query  43    FALGKKQSSDLEETLNQEPRSNVEQNIATTT-NMQGLP-QARDLLDGRGNFPKFTLGDME  100
             F + KKQSSDL ETL+QEP ++V+ +IATTT ++QGLP +ARDLLD RGNF+KFTLGDME
Sbjct  230   FVFNKKQSSDLKETLDQEPVPHVQPDIATTTTDIQGLPPEARDLLDERGNFSKFTLGDME  289

Query  101   MLDVEGIADIDPNYKFSQLLVHSNVLSSMSMGSHSNMEPEKVSLLYGDNGGPEARHDWNA  160
             MLDVEG+ADIDPNYKF+QLL+H+N LSS+ MGSH+ +EPEKVSLLYG+NGG  A+HDWNA
Sbjct  290   MLDVEGVADIDPNYKFNQLLIHNNALSSVLMGSHNGIEPEKVSLLYGGNGGFGAKHDWNA  349

Query  161   TVGYKNQQGNNVATLINMHLKNGSGLVIAGNEGGINNPSFYLYKKDQLTGLEQALSQEEI  220
             TVGYK+QQGNNVAT+IN+H+KNGSGLVIAG E GINNPSFYLYK DQLTG ++ALSQEEI
Sbjct  350   TVGYKDQQGNNVATIINVHMKNGSGLVIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEI  409

Query  221   QNKVDFMEFLAQNSTKLDNLSEKEKEKFQTEIGNFQKDPKAYLDTLGSDHIAFVSKKDNK  280
             QNK++FMEFLAQN++KLDNLSEKEKEKF+TEI +FQKD+KAYLD+LG+D+IAFVSKKD K
Sbjct  410   QNKINFMEFLAQNNAKLDNLSEKEKEKFRTEIEDFQKDSKAYLDALGNDRIAFVSKKDTK  469

Query  281   HLALVTDFGNGELSYTLKDYGKEQDRALDRETKTTFQGNLKDDGVMFVNYSNFKYTNASK  340
             H AL+T+FGNG+LSYTLKDYGK  D+ALDRE + T+QG+LK+DGVMFV+YSNFKYTNASK
Sbjct  470   HSALITEFGNGDLSYTLKDYGKKADKALDREKNVTLQGSLKHDGVMFVDYSNFKYTNASK  529

Query  341   SPNEGIGATNGVSHLEANFSKVAIFNLPKLNGLVLSNHPVRQNLEDKVIAKGLSPKEANK  400
             +PN G+G TNGVSHLEA F KVA+FNLP LN L +++  VR+NLEDK+ +KGLS +EANK
Sbjct  530   NPNKGVGVTNGVSHLEAGFDKVAVFNLPDLNNLAITSF-VRRNLEDKLATKGLSLQEANK  588

Query  401   LVKDFLNSNKELVGKVSSFNKAVAEAKNTGNYGGVKKAQKDLEKSIRKREHLEKEVTKKI  460
             L+KDFLNSNKELVGK  +FNKAVAEAKNTGNY+ VKKAQKDLEKS++KREHLEKEV+KK+
Sbjct  589   LIKDFLNSNKELVGKALNFNKAVAEAKNTGNYDEVKKAQKDLEKSLKKREHLEKEVAKKL  648

Query  461   ESKSGNKNKMEAKAQANSQKDEIFALINQETYKEARNASYDQNLEGIRRELSDKIENINK  520
             ESKSGNKNKMEAK+QANSQKDEIFALIN+E+ ++AR  +Y QNL GI+RELSDK+ENINK
Sbjct  649   ESKSGNKNKMEAKSQANSQKDEIFALINKEANRDARAIAYAQNLKGIKRELSDKLENINK  708

Query  521   NLKDFNKSFDALKSGNNKDFSKVEETLKALKSSVKDLGINPEWISKVENLSTALNEFKNG  580
             +LKDF+KSFD +K+G+NKDFSK EETLKALK+SVKDLGINPEWISKVENL+TALNEFKNG
Sbjct  709   DLKDFSKSFDEFKNGKNKDFSKAEETLKALKGSVKDLGINPEWISKVENLNTALNEFKNG  768

Query  581   KNKDFSKVTQAKSDLENSIKDAIVNQEITDKVDNLNQAVLVAKTACNFSMLDQALADLKN  640
             KNKDFSKVTQAKSDLENSIKD I+NQ ITDKVDNLNQAV +AK++ +FS ++QALADLKN
Sbjct  769   KNKDFSKVTQAKSDLENSIKDVIINQKITDKVDNLNQAVSIAKATGDFSGVEQALADLKN  828

Query  641   FSTDQ--KLDQKNESFNVGKDSDLQKSVKNRVNGTLVGNGLSKTEATTLTGKISGIkkel  698
             FS +Q  +  QKNE FN GK+S++ +SVKN VNGTLVGNGLSK+EATTL+ ++S+IKKEL
Sbjct  829   FSKGQLAQQAQKNEDFNTGKNSEIYQSVKNGVNGTLVGNGLSKAEATTLSKNFSDIKKEL  888

Query  699   nekfanfnnnnglknSAEPIYAQVNKKKTGQVTSPEGSIYDQVAKDVSAKIDKLNKIASA  758
             + K++NFNNNN      EPIYA+VNKKK+GQ +SPE +IY QVAK V+AKID+LN+IAS+
Sbjct  889   EAKLGNFNNNNNNGLKNEPIYAKVNKKKAGQAASPEEPIYAQVAKKVNAKIDRLNQIASG  948

Query  759   SKGVDDFSGLGLGRLA-----TRL---DGREPIYVTIDDLGGPYTLKMHAGDDNLRSKVG  810
               GV++ +G+ L R       +++     +EPIY TIDDLGG++ LK H   D+L SKVG
Sbjct  949   LGGVGQAAGFPLKRHDKVDDLSKVGLSANHEPIYATIDDLGGSFPLKRHDKVDDL-SKVG  1007

Query  811   LSRDQELTQKIGNLNQAVLEAKAGLFVNPQQMTHLEQMMHGLKDSTKKNVVNLWFEGAKK  870
             LSR+QEL+QKI+NLNQAV EAKAG+F       +LEQ ++ LKDSTK N VNLW E+AKK
Sbjct  1008  LSRNQELAQKIDNLNQAVSEAKAGFF------GNLEQTIDNLKDSTKYNSVNLWAESAKK  1061

Query  871   VPTSLQAKLDNYATNSHIHINSNVKNGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGSV  930
             VP+SL AKLDNYA NSH +INSNVKNGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGSV
Sbjct  1062  VPASLSAKLDNYAINSHTRINSNVKNGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGSV  1121

Query  931   PLSDYDKIGFNQKNMKGYSDSFKFSTKFNNAVKNIKSGFEQFLTDCFSTGSY----SPKK  986
             PLS+YDKIGFNQKNMK+YSDSFKFSTK+NNAVK+ KSGF +FL++ FST+SY    +  +
Sbjct  1122  PLSEYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDTKSGFTRFLANAFSTASYYYFLAGEN  1181

Query  987   AEYGV----TKSGFQKS  999
             AE G+    TK+GFQKS
Sbjct  1182  AEHGIKNVNTKGGFQKS  1198