>AY330637|20|G20|37811806|AAR03881.1|Helicobacter_pylori_Ca52|+|21859..25455|cagA|HP0547|CagA
Length = 3597
Score = 1568 bits (4047), Expect = 0.0
Identities = 863/963 (90%)
Strand = Plus / Plus
Query: 1637 actcttcaaggtaacctaaagcatgatggcgtgatgtttgtcaattattccaatttcaaa 1696
||||||||||||| |||||| |||||||||||||||||||| ||||||| |||||||||
Sbjct: 1510 actcttcaaggtagcctaaaacatgatggcgtgatgtttgttgattattctaatttcaaa 1569
Query: 1697 tacaccaacgcctccaagagtcctgatgagggtataggcgctacgaatggcgtttcccat 1756
||||||||||||||||||| ||| || ||||| |||||| |||||||||||||||||||
Sbjct: 1570 tacaccaacgcctccaagaatcccaataagggtgtaggcgttacgaatggcgtttcccat 1629
Query: 1757 ttggaagcaaattttagcaaggtggctgtctttaatttgcctgatttaaatggtctcgct 1816
|| |||||| ||| |||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 1630 ttagaagcaggctttgacaaggtagctgtctttaatttgcctgatttaaataatctcgct 1689
Query: 1817 atctctagttttgcaaggcggaatttagaggataaactgatcgctaaaggattgccccca 1876
||| ||||||| | |||||||||||||||||||||||| | ||||||||||| ||| |
Sbjct: 1690 atcactagtttcgtaaggcggaatttagaggataaactagccactaaaggattgtcccta 1749
Query: 1877 aaagacgctaataagatcatcaaagactttttgaacagcaacaaggaattgcttgaaaaa 1936
|||| ||||||||| | |||||||||||||||||||||||||| |||||| ||| ||||
Sbjct: 1750 caagaagctaataagcttatcaaagactttttgaacagcaacaaagaattggttggaaaa 1809
Query: 1937 gctttagacttcaataaagctgtagctgaagctaaaaatacaggcaattatgacggagtg 1996
|||||| ||||||||||||||||||||||||||||||| |||||||| ||||| | ||||
Sbjct: 1810 gctttaaacttcaataaagctgtagctgaagctaaaaacacaggcaactatgatgaagtg 1869
Query: 1997 aaaaaagctcaaaaagatcttgaaaaatctataaggaaacgagagcgtttagagcaagaa 2056
||||||||||| |||||||||||||||||| ||| ||||||||||| ||||||| |||||
Sbjct: 1870 aaaaaagctcagaaagatcttgaaaaatctctaaagaaacgagagcatttagagaaagaa 1929
Query: 2057 ataacgaaaaaatttgagaacaagagcggcaacaaaaataaaatggaagcgaaagttcaa 2116
|| |||||||||| |||| || |||||||||||||||||||||||||||||| ||||
Sbjct: 1930 gtagcgaaaaaattggagagtaaaagcggcaacaaaaataaaatggaagcgaaatctcaa 1989
Query: 2117 gctaacagccaaaaagatgggatttttaagcttatcaatgaagaggctcataaggaagca 2176
||||||||||||||||||| ||||||| | | |||||| |||||||| ||| || |||
Sbjct: 1990 gctaacagccaaaaagatgagatttttgcgttgatcaataaagaggctaatagagacgca 2049
Query: 2177 agaatcgccgcttacgctcagaatcttaaaggcatcaggagggaattgtttgataaagtt 2236
||| |||||||||||| |||||||||||||||| |||||||||| ||||||| ||
Sbjct: 2050 agagcaatcgcttacgctcaaaatcttaaaggcatcaaaagggaattgtctgataaactt 2109
Query: 2237 aaaaatctcaacaagaatttgaaagactttgataaatcttttgatgcgctcaaaagtggc 2296
||||| |||||||| |||||||||||||| |||||||||||||| |||||| ||||
Sbjct: 2110 gaaaatatcaacaaggatttgaaagactttagtaaatcttttgatgaattcaaaaatggc 2169
Query: 2297 aaaaataaggatttcagcaaggcagaagaaacgctaaaagcccttgaaagctcggtgaaa 2356
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 2170 aaaaataaggatttcagcaaggcagaagaaacgctaaaagcccttaaaggctcggtgaaa 2229
Query: 2357 gatttgggtatcaatccagaatggatttcaaaagttgaaaaccttaatgcagctttgaat 2416
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2230 gatttaggtatcaatccagaatggatttcaaaagttgaaaaccttaatacagctttgaat 2289
Query: 2417 gaattcaaaaatggcaaaaataaggatttcagcaaggtaacacaagcaaaaagcgacctt 2476
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2290 gaattcaaaaatggcaaaaataaggatttcagcaaggtaacgcaagcaaaaagcgacctt 2349
Query: 2477 gaaaattccattaaggatgtgctcatcaatcaagagataacggataaagttgacaatctc 2536
|||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 2350 gaaaattccattaaagatgtgatcatcaatcaaaagataacggataaagttgacaatctc 2409
Query: 2537 aatcaggctgtattaagggctaaagcgataggcgattttagtggggtagagcaagagcta 2596
||||| ||||||| || ||||| || | ||||||||| |||||||||||||||| ||||
Sbjct: 2410 aatcaagctgtatcaatagctaaggcaacaggcgatttcagtggggtagagcaagcgcta 2469
Query: 2597 gcc 2599
|||
Sbjct: 2470 gcc 2472
Score = 841 bits (2169), Expect = e-244
Identities = 467/518 (90%)
Strand = Plus / Plus
Query: 56 cggcttttaatccacaacaatttatcaataatcttcaagtggcttttattaaacttgata 115
|||||||||| || || |||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 89 cggcttttaacccgcagcaatttatcaataatcttcaagtggcttttcttaaagttgata 148
Query: 116 gtgctgtcgcttcatttgatcccgatcaaaaaccaatcgttgataagaacgatagggata 175
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 149 acgctgtcgcttcatacgatcctgatcaaaaaccaatcgttgataagaacgatagggata 208
Query: 176 acaggcaagcttttaatgtaatctcgcaattaagggaagaatacgccaataaagcgatca 235
|||||||||||||| | | ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 209 acaggcaagcttttgagggaatctcgcaattaagggaagaatactccaataaagcgatca 268
Query: 236 aaaatcccaccaaaaagaatcagtatttttcagactttatcgataaaagcaatgatttga 295
||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 269 aaaatcctaccaaaaagaatcagtatttttcagactttatcgataagagcaatgatttaa 328
Query: 296 tcaacaaaaacgatctcattgatacagattcttccacaaagagctttgaaaaatttgggg 355
|||||||| || ||||| ||||| || |||||||||||||||||| | ||||||||||
Sbjct: 329 tcaacaaagacaatctcgttgatgtggaatcttccacaaagagctttcagaaatttgggg 388
Query: 356 ctcagcgttaccaaatttttatgaattgggtgtcccatcaaaaagatccgtctaaaatca 415
|||||||||||||||||| | | |||||||||||||||||| ||||||||||||||||
Sbjct: 389 atcagcgttaccaaattttcacaagttgggtgtcccatcaaaacgatccgtctaaaatca 448
Query: 416 acacccaaaaaatccgagattttatggaaaatatcatacaaccccctatctctgatgata 475
|||||| | |||||| |||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 449 acacccgatcgatccgaaattttatggaaaatatcatacaaccccctatccctgatgaca 508
Query: 476 aagaaaaagcggagtttttgaggtctgccaaacaatcttttgcaggaattatcataggga 535
|||||||||| |||||||||| |||||||||||| ||||||||||||| || |||||||
Sbjct: 509 aagaaaaagcagagtttttgaaatctgccaaacaagcttttgcaggaatcattataggga 568
Query: 536 accaaacccgatcggatgaaaaattcatgggcgttttt 573
| |||| |||| ||||| |||| ||||||||||| |||
Sbjct: 569 atcaaatccgaacggatcaaaagttcatgggcgtattt 606
Score = 555 bits (1432), Expect = e-158
Identities = 324/366 (89%)
Strand = Plus / Plus
Query: 1269 gaaatgggattaacaaccctagcttctatctctacaaaacagaccaactcacaggcttgg 1328
|||| ||||||||||||||||| || |||||||||||| |||||||||||||||||
Sbjct: 1143 gaaa-gggattaacaaccctagtttttatctctacaaagaagaccaactcacaggctcac 1201
Query: 1329 aacaagcgttgagtcaagaagagatccaaaacaaagtggatttcatggaacttcttgcac 1388
| | ||| ||||||||||||||||||||||||||| | ||||||||||| |||||||||
Sbjct: 1202 agcgagcattgagtcaagaagagatccaaaacaaaataaatttcatggaatttcttgcac 1261
Query: 1389 aaaacaacgctagattagataacttgagcgaggaagagaaagaaaagttccaaactgaga 1448
|||| || |||| |||||| |||||||||||| ||||||| ||||| |||| ||||||||
Sbjct: 1262 aaaataatgctaaattagacaacttgagcgagaaagagaaggaaaaattccgaactgaga 1321
Query: 1449 ttggaaatttccaaaaagaccctaaggcttatttagactccctagggaatgatcgcattg 1508
||| | |||| || |||||| |||||||||||||||| |||||||||||||||| ||||
Sbjct: 1322 ttgaagattttcagaaagactctaaggcttatttagatgccctagggaatgatcgtattg 1381
Query: 1509 cttttgtttctaaaaaagac-caaaagcatttagctttggttactgagtttggtaatggg 1567
|||||||||||||||||||| ||||| |||| |||||| ||||||||||||||||||||
Sbjct: 1382 cttttgtttctaaaaaagacacaaaa-cattcagctttaattactgagtttggtaatggg 1440
Query: 1568 gaattgagctatactctcaaagattatgggaaaaaacaagatagagctttagatagggag 1627
|| |||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 1441 gatttgagctacactctcaaagattatgggaaaaaagcagataaagctttagatagggag 1500
Query: 1628 acaaaa 1633
| ||||
Sbjct: 1501 a-aaaa 1505
Score = 499 bits (1289), Expect = e-141
Identities = 265/281 (94%)
Strand = Plus / Plus
Query: 3016 agcgaaattggacaattacgctactaacagccacacacgcattaatagcaatgtcaaaaa 3075
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 3201 agcgaaattggacaattacgctattaacagccacacacgcattaatagcaatgtcaaaaa 3260
Query: 3076 tggaacaatcaatgaaaaagcgatcggcatgctaacgcaaaaaaaccctgagtggctcaa 3135
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 3261 tggagcaatcaatgaaaaagcgaccggcatgctaacgcaaaaaaaccctgagtggctcaa 3320
Query: 3136 gcttgtgaatgataagatagttgcgcataatgtgggaagcgctcctttgtcaggttatga 3195
||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 3321 gctcgtgaatgataagatagttgcgcataatgtgggaagcgttcctttgtcagagtatga 3380
Query: 3196 taaaattggattcaaccaaaagaatatgaaaggttattctgattcgttcaggttttccac 3255
||||||||| |||||||| ||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 3381 taaaattggcttcaaccagaagaatatgaaagattattctgattcgttcaagttttccac 3440
Query: 3256 caagttgagcaatgccgtaaaaaacattaagtctgacttta 3296
|||||||| |||||| |||||| ||| |||||||| |||||
Sbjct: 3441 caagttgaacaatgctgtaaaagacactaagtctggcttta 3481
Score = 392 bits (1013), Expect = e-109
Identities = 227/258 (88%)
Strand = Plus / Plus
Query: 779 aaagagaggcaagaagcacaaaacaatggagagcct---gttggggattggcttgatatt 835
||||| |||||||||||| |||| ||||||| |||| | |||||||||| | ||||||
Sbjct: 619 aaagaaaggcaagaagcagaaaaaaatggagggcctactggtggggattggttggatatt 678
Query: 836 tttttatcgtttgtatttaacaaagaacaatcttctgatctcaaagaaacgctcaatcaa 895
|||||||| ||||| || |||||| |||||||||| |||||||||||||||||| |||||
Sbjct: 679 tttttatcatttgtgttcaacaaaaaacaatcttccgatctcaaagaaacgctcgatcaa 738
Query: 896 gagccaaggcctcatgttgaacaaaatgtagcctctacccccacccacatacaaggctta 955
|| ||| |||||||| ||| | || ||||| ||||| ||||| ||||||||||||||
Sbjct: 739 gaaccagttcctcatgtccaaccagatatagccactaccaccaccgacatacaaggctta 798
Query: 956 ccgcctgaagctagggatttgcttgatgaaaggggtgatttttctaaattcactcttggt 1015
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 799 ccgcctgaagctagggatttgcttgatgaaaggggtaatttttctaaattcactcttggc 858
Query: 1016 gatatggaaatgttggat 1033
|||||||||||||| |||
Sbjct: 859 gatatggaaatgttagat 876
Score = 368 bits (950), Expect = e-102
Identities = 209/241 (87%)
Strand = Plus / Plus
Query: 2766 atctcggcggatcttcccctttgaaaaggtatgctaaagttgatgatctcagtaaggtag 2825
||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 2960 atctcggcggatctttccctttgaaaaggcatgataaagttgatgatctcagtaaggtag 3019
Query: 2826 ggctttcaagggagcaagaattgaatgagaaaattggcaatctcaatcaggcagtgtcag 2885
||||||||||| | ||||||||| | ||||||||| ||||||||||||||| || ||||
Sbjct: 3020 ggctttcaaggaatcaagaattggctcagaaaattgacaatctcaatcaggcggtatcag 3079
Query: 2886 aagctaaagcaggttcttttggcaacctagaacaaatgatggatggactcaaagattcta 2945
||||||||||||||| ||||||||| ||||| |||| ||| || |||||||||||||
Sbjct: 3080 aagctaaagcaggtttttttggcaatctagagcaaacgatagacaatctcaaagattcta 3139
Query: 2946 caaaaaagaatgttgtgaatctatggtttgaaggtgcaagaaaagtgcctattagtttgc 3005
||||| | ||| |||||||||||| |||| |||||| |||||||||| |||||||
Sbjct: 3140 caaaatacaattccgtgaatctatgggctgaaagtgcaaaaaaagtgcctgctagtttgt 3199
Query: 3006 c 3006
|
Sbjct: 3200 c 3200
Score = 357 bits (922), Expect = 9e-99
Identities = 198/227 (87%)
Strand = Plus / Plus
Query: 1034 tacaagttcaaccagttaccgattcacaataacgctctgtcttctatgctaatggggagt 1093
|||||||||||||| ||| ||||||||||||||||||||||||| || |||||||||||
Sbjct: 907 tacaagttcaaccaattattgattcacaataacgctctgtcttctgtgttaatggggagt 966
Query: 1094 catagcagcatagaacctgaaaaagtttcattgttgtatggggataatggtggtcctgaa 1153
|||| ||||||||||||||||||||||||| |||||||||| ||||||||| || |
Sbjct: 967 cataatggcatagaacctgaaaaagtttcattattgtatgggggcaatggtggttttgga 1026
Query: 1154 gctaggcatgattggaacgccaccgttggttataaaaaccaacaaggcaacaatgtggcc 1213
|| | ||| ||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 1027 gccaagcacgattggaacgccaccgttggttataaagaccaacaaggtaacaatgtggct 1086
Query: 1214 acactcatcaatgcgcatcttaaaaacggcagcgggttagtcatagc 1260
||| | || |||| |||| | ||||||||||| || || ||||||||
Sbjct: 1087 acaataattaatgtgcatatgaaaaacggcagtggcttggtcatagc 1133
Score = 123 bits (317), Expect = 3e-28
Identities = 70/77 (91%)
Strand = Plus / Plus
Query: 2689 ccctttgaaaaggtatgctaaagttgatgatctcagtaaggtagggcaatcagatagccc 2748
||||||||||||| ||| ||||||||||||||||||||||||||||| |||| || ||
Sbjct: 2874 ccctttgaaaaggcatgataaagttgatgatctcagtaaggtagggctttcagctaacca 2933
Query: 2749 tgaacccatttacgcta 2765
|||||||||||||||||
Sbjct: 2934 tgaacccatttacgcta 2950
Score = 88 bits (228), Expect = 8e-18
Identities = 48/54 (89%)
Strand = Plus / Plus
Query: 3347 gcggaacatggagttaaaaatattaatacaaaaagtggtttccagaaatcttaa 3400
||||| |||||| | |||||| ||||||||||| |||||||||| |||||||||
Sbjct: 3544 gcggagcatggaatcaaaaatgttaatacaaaaggtggtttccaaaaatcttaa 3597
Score = 30 bits (78), Expect = 2e+00
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 1 atggctaacgaaaccat 17
||| |||||||||||||
Sbjct: 49 atgactaacgaaaccat 65
Score = 23 bits (60), Expect = 3e+02
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 755 gatgaatctttg 766
||||||||||||
Sbjct: 607 gatgaatctttg 618
Score = 15 bits (40), Expect = 7e+04
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 2603 ctcaaaag 2610
||||||||
Sbjct: 2487 ctcaaaag 2494 |