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PAthogenisity Island DataBase (PAI DB)

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Homologs of HMPREF0351_12126 gene of NC_017960_P1

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) EFAU004_02130
( YP_005355332.1 )

Phage gp6-like head-tail connector protein

NC_017022
(Enterococcus faecium Aus0004)

1e-38

100

2) HMPREF0351_12126
( YP_006376732.1 )

bacteriophage DNA packaging protein

NC_017960
(Enterococcus faecium DO)

1e-38

100

3) PECL_602
( YP_005004575.1 )

phage gp6-like head-tail connector family protein

NC_016605
(Pediococcus claussenii ATCC BAA-344)

7e-12

4) BSNT_02832
( YP_005561098.1 )

hypothetical protein

NC_017196
(Bacillus subtilis BEST195)

2e-11

5) LBP_cg1994
( YP_007987671.1 )

Prophage Lp3 protein 19, head-to-tail joining

NC_021224
(Lactobacillus plantarum P-8)

3e-11

6) BaLi_c06980
( YP_008076831.1 )

hypothetical protein

NC_021362
(Bacillus licheniformis 9945A)

8e-11

7) JDM1_0047
( YP_003061633.1 )

prophage Lp3 protein 19, head-to-tail joining

NC_012984
(Lactobacillus plantarum JDM1)

2e-10

8) Lp16_1952
( YP_008121768.1 )

prophage P2b protein 19, head-to-tail joining

NC_021514
(Lactobacillus plantarum 16)

3e-10

9) lp_2462
( YP_004890151.1 )

prophage P2b protein 19, head-to-tail joining

NC_004567
(Lactobacillus plantarum WCFS1)

3e-10

• Sequence Alignments

1) EFAU004_02130 in NC_017022


> NC_017960_P1|2|G2|389869309|YP_006376732.1|Enterococcus_faecium_DO|-|323..607|-|HMPREF0351_12126|bacteriophage 
DNA packaging 
protein
Length=94

 Score =  152 bits (561),  Expect = 1e-38, Method: Compositional matrix adjust.
 Identities = 94/94 (100%), Positives = 94/94 (100%), Gaps = 0/94 (0%)

Query  1   MVILDSIKKSMRIDHTIDDDFIQQLIDTAGEYIKSAIDSSATDKDMDNYQQFDLAVSLLT  60
           MVILDSIKKSMRIDHTIDDDFIQQLIDTAGEYIKSAIDSSATDKDMDNYQQFDLAVSLLT
Sbjct  1   MVILDSIKKSMRIDHTIDDDFIQQLIDTAGEYIKSAIDSSATDKDMDNYQQFDLAVSLLT  60

Query  61  QHWYLNRQEASSERIPVTVQALVQQMRGAYYANH  94
           QHWYLNRQEASSERIPVTVQALVQQMRGAYYANH
Sbjct  61  QHWYLNRQEASSERIPVTVQALVQQMRGAYYANH  94

2) HMPREF0351_12126 in NC_017960


> NC_017960_P1|2|G2|389869309|YP_006376732.1|Enterococcus_faecium_DO|-|323..607|-|HMPREF0351_12126|bacteriophage 
DNA packaging 
protein
Length=94

 Score =  152 bits (561),  Expect = 1e-38, Method: Compositional matrix adjust.
 Identities = 94/94 (100%), Positives = 94/94 (100%), Gaps = 0/94 (0%)

Query  1   MVILDSIKKSMRIDHTIDDDFIQQLIDTAGEYIKSAIDSSATDKDMDNYQQFDLAVSLLT  60
           MVILDSIKKSMRIDHTIDDDFIQQLIDTAGEYIKSAIDSSATDKDMDNYQQFDLAVSLLT
Sbjct  1   MVILDSIKKSMRIDHTIDDDFIQQLIDTAGEYIKSAIDSSATDKDMDNYQQFDLAVSLLT  60

Query  61  QHWYLNRQEASSERIPVTVQALVQQMRGAYYANH  94
           QHWYLNRQEASSERIPVTVQALVQQMRGAYYANH
Sbjct  61  QHWYLNRQEASSERIPVTVQALVQQMRGAYYANH  94

3) PECL_602 in NC_016605


> NC_017960_P1|2|G2|389869309|YP_006376732.1|Enterococcus_faecium_DO|-|323..607|-|HMPREF0351_12126|bacteriophage 
DNA packaging 
protein
Length=94

 Score = 63.9 bits (223),  Expect = 7e-12, Method: Compositional matrix adjust.
 Identities = 39/87 (45%), Positives = 61/87 (71%), Gaps = 4/87 (4%)

Query  3   VTVDDIKRSLRIDLTDDDEMIQTYINTANQYV---LDAVGGQTDITKFEQYDFAVSLLTQ  59
           V +D IK+S+RID T DD+ IQ  I+TA +Y+   +D+ + + D+ +++Q+D+AVSLLTQ
Sbjct  2   VILDSIKKSMRIDHTIDDDFIQQLIDTAGEYIKSAIDSSATDKDMDNYQQFDLAVSLLTQ  61

Query  60  FWYANRNIDMKE-TPYQVVSMIQQLRG  85
            WY NR+    E  P  V +++QQ+RG
Sbjct  62  HWYLNRQEASSERIPVTVQALVQQMRG  88

4) BSNT_02832 in NC_017196


> NC_017960_P1|2|G2|389869309|YP_006376732.1|Enterococcus_faecium_DO|-|323..607|-|HMPREF0351_12126|bacteriophage 
DNA packaging 
protein
Length=94

 Score = 62.9 bits (219),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 40/93 (44%), Positives = 59/93 (64%), Gaps = 4/93 (4%)

Query  1   MTLEELKLAMRIDHNFDDGFIQRLKDTAEDYIKDAVTLSPNRDAFFQNNPKFDTAVMFLV  60
           + L+ +K +MRIDH +DD+FIQ+L DTA +YIK A+  S+  D   +N  +FD AV +L 
Sbjct  2   VILDSIKKSMRIDHTIDDDFIQQLIDTAGEYIKSAID-SSATDKDMDNYQQFDLAVSLLT  60

Query  61  GAWYEQRVSSMDKALQEIPFGVTNFIQQFRGAY  93
             WY +R    + + + IP  V  ++QQ RGAY
Sbjct  61  QHWYLNR---QEASSERIPVTVQALVQQMRGAY  90

5) LBP_cg1994 in NC_021224


> NC_017960_P1|2|G2|389869309|YP_006376732.1|Enterococcus_faecium_DO|-|323..607|-|HMPREF0351_12126|bacteriophage 
DNA packaging 
protein
Length=94

 Score = 61.8 bits (215),  Expect = 3e-11, Method: Compositional matrix adjust.
 Identities = 39/87 (45%), Positives = 61/87 (71%), Gaps = 4/87 (4%)

Query  3   VTVDDIKLSLRIDVTEDDKMIKNYLDAAEDYVQTAVSGS---KDVSMYKQYDFAVSLLTQ  59
           V +D IK S+RID T DD  I++ +D+A +Y+++A+ +S   KD+  Y+Q+D+AVSLLTQ
Sbjct  2   VILDSIKKSMRIDHTIDDDFIQQLIDTAGEYIKSAIDSSATDKDMDNYQQFDLAVSLLTQ  61

Query  60  FWYQNRVTDMT-KTPYQVVSMIQQLRG  85
            WY NR    + + P  V +++QQ+RG
Sbjct  62  HWYLNRQEASSERIPVTVQALVQQMRG  88

6) BaLi_c06980 in NC_021362


> NC_017960_P1|2|G2|389869309|YP_006376732.1|Enterococcus_faecium_DO|-|323..607|-|HMPREF0351_12126|bacteriophage 
DNA packaging 
protein
Length=94

 Score = 60.5 bits (210),  Expect = 8e-11, Method: Compositional matrix adjust.
 Identities = 40/93 (44%), Positives = 57/93 (62%), Gaps = 4/93 (4%)

Query  1   MTLDDLKLAMRIDHEFDDRLIQQLKDAAENYIKDAVTLSPDREDFFKDNPKFDMAVMFLV  60
           + LD +K +MRIDH +DD +IQQL D+A +YIK A+  S+   D   +  +FD+AV +L 
Sbjct  2   VILDSIKKSMRIDHTIDDDFIQQLIDTAGEYIKSAIDSSATDKD-MDNYQQFDLAVSLLT  60

Query  61  GAWYEQRVSSVDKALEEIPFGVTNFIQQFRGAY  93
             WY +R  +     E IP  V  ++QQ RGAY
Sbjct  61  QHWYLNRQEASS---ERIPVTVQALVQQMRGAY  90

7) JDM1_0047 in NC_012984


> NC_017960_P1|2|G2|389869309|YP_006376732.1|Enterococcus_faecium_DO|-|323..607|-|HMPREF0351_12126|bacteriophage 
DNA packaging 
protein
Length=94

 Score = 58.9 bits (204),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 38/87 (44%), Positives = 59/87 (68%), Gaps = 4/87 (4%)

Query  3   VTVDDIKLSLRIDVTEDDPMIQSYLDAAKDYVQTAV---SKNEDLTVYKQYDFAVSLLTQ  59
           V +D IK S+RID T DD  IQ  +D+A +Y+++A+   + + D+  Y+Q+D+AVSLLTQ
Sbjct  2   VILDSIKKSMRIDHTIDDDFIQQLIDTAGEYIKSAIDSSATDKDMDNYQQFDLAVSLLTQ  61

Query  60  FWYQNR-VTDMKQTPYQVISMIQQLRG  85
            WY NR  +   + P  V +++QQ+RG
Sbjct  62  HWYLNRQEASSERIPVTVQALVQQMRG  88

8) Lp16_1952 in NC_021514


> NC_017960_P1|2|G2|389869309|YP_006376732.1|Enterococcus_faecium_DO|-|323..607|-|HMPREF0351_12126|bacteriophage 
DNA packaging 
protein
Length=94

 Score = 58.9 bits (204),  Expect = 3e-10, Method: Compositional matrix adjust.
 Identities = 38/87 (44%), Positives = 59/87 (68%), Gaps = 4/87 (4%)

Query  3   VTVDDIKLSLRIDVTEDDPMIKSYLDAAEDYVQMAV---STNEDVSMYKQYDFAVSLLTQ  59
           V +D IK S+RID T DD  I+  +D+A +Y++ A+   +T+ D+  Y+Q+D+AVSLLTQ
Sbjct  2   VILDSIKKSMRIDHTIDDDFIQQLIDTAGEYIKSAIDSSATDKDMDNYQQFDLAVSLLTQ  61

Query  60  FWYQNRVTDMT-KTPYQVVSMIQQLRG  85
            WY NR    + + P  V +++QQ+RG
Sbjct  62  HWYLNRQEASSERIPVTVQALVQQMRG  88

9) lp_2462 in NC_004567


> NC_017960_P1|2|G2|389869309|YP_006376732.1|Enterococcus_faecium_DO|-|323..607|-|HMPREF0351_12126|bacteriophage 
DNA packaging 
protein
Length=94

 Score = 58.7 bits (203),  Expect = 3e-10, Method: Compositional matrix adjust.
 Identities = 37/87 (43%), Positives = 59/87 (68%), Gaps = 4/87 (4%)

Query  3   VTVDDIKLSLRIDVTEDDPMIKSYLDAAKDYVQTAV---SKNEDLTIYKQYDFAVSLLTQ  59
           V +D IK S+RID T DD  I+  +D+A +Y+++A+   + + D+  Y+Q+D+AVSLLTQ
Sbjct  2   VILDSIKKSMRIDHTIDDDFIQQLIDTAGEYIKSAIDSSATDKDMDNYQQFDLAVSLLTQ  61

Query  60  FWYQNRVTDMT-KTPYQVVSMIQQLRG  85
            WY NR    + + P  V +++QQ+RG
Sbjct  62  HWYLNRQEASSERIPVTVQALVQQMRG  88