>NC_017368_P1|2|G2|385217570|YP_005779046.1|Helicobacter_pylori_F16|-|366..3884|cagA|HPF16_0811|cag
Length = 3519
Score = 2453 bits (6330), Expect = 0.0
Identities = 1362/1494 (91%)
Strand = Plus / Plus
Query: 1058 cacaataacgctctgtcttctatgctaatggggagtcatagcagcatagaacctgaaaaa 1117
|||||||||||| | |||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 886 cacaataacgctttatcttctatgctaatggggagtcatagtaacatagaacctgaaaaa 945
Query: 1118 gtttcattgttgtatggggataatggtggtcctgaagctaggcatgattggaacgccacc 1177
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946 gtttcattattgtatggggataatggtggtcctgaagctaggcatgattggaacgccacc 1005
Query: 1178 gttggttataaaaaccaacaaggcaacaatgtggccacactcatcaatgcgcatcttaaa 1237
|||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 1006 gttggttataaagaccaacagggcaacaatgtggccacactcattaatgcgcatcttaat 1065
Query: 1238 aacggcagcgggttagtcatagcgggtaatggaaatgggattaacaaccctagcttctat 1297
|||| ||| |||||| ||||||||||||||| |||||||||| || |||||||||||
Sbjct: 1066 aacgacagtgggttaatcatagcgggtaatgaggatgggattaaaaatcctagcttctac 1125
Query: 1298 ctctacaaaacagaccaactcacaggcttggaacaagcgttgagtcaagaagagatccaa 1357
||||||||| ||| ||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 1126 ctctacaaagaagatcaactcacaggcttgaaacaagcaatgagtcaagaagagatccaa 1185
Query: 1358 aacaaagtggatttcatggaacttcttgcacaaaacaacgctagattagataacttgagc 1417
||||||||||||||||||||| |||||||||||||||| |||| |||||| |||||||||
Sbjct: 1186 aacaaagtggatttcatggaatttcttgcacaaaacaatgctaaattagacaacttgagc 1245
Query: 1418 gaggaagagaaagaaaagttccaaactgagattggaaatttccaaaaagaccctaaggct 1477
||| ||||||||||||| |||||| ||||||||| ||||||||||||||||| |||||||
Sbjct: 1246 gagaaagagaaagaaaaattccaagctgagattgaaaatttccaaaaagaccgtaaggct 1305
Query: 1478 tatttagactccctagggaatgatcgcattgcttttgtttctaaaaaagacc-aaaagca 1536
||||| ||| | ||||||||||||| |||||||||||||||||||||||||| |||| ||
Sbjct: 1306 tatttggacgctctagggaatgatcacattgcttttgtttctaaaaaagacccaaaa-ca 1364
Query: 1537 tttagctttggttactgagtttggtaatggggaattgagctatactctcaaagattatgg 1596
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1365 tttagctttggttactgagtttggtaatggggaagtgagctatactctcaaagattatgg 1424
Query: 1597 gaaaaaacaagatagagctttagatagggagacaaaaaccactcttcaaggtaacctaaa 1656
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1425 gaaaaaacaagataaagctttagatggggagacaaaaaccactcttcaaggtaacctaaa 1484
Query: 1657 gcatgatggcgtgatgtttgtcaattattccaatttcaaatacaccaacgcctccaagag 1716
||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 1485 atatgatggcgtgatgtttgttgattattctaatttcaaatacaccaacgcctccaagag 1544
Query: 1717 tcctgatgagggtataggcgctacgaatggcgtttcccatttggaagcaaattttagcaa 1776
||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1545 tcctgataagggtgtaggcgctacgaatggcgtttcccatttggaagcgaattttagcaa 1604
Query: 1777 ggtggctgtctttaatttgcctgatttaaatggtctcgctatctctagttttgcaaggcg 1836
||| |||||||||||||||||| |||||||| |||||||||| ||| || | ||||||
Sbjct: 1605 ggtagctgtctttaatttgcctaatttaaataatctcgctatcactaattatataaggcg 1664
Query: 1837 gaatttagaggataaactgatcgctaaaggattgcccccaaaagacgctaataagatcat 1896
||||||| |||||| || |||||||||||| || || |||| ||||||||| ||||
Sbjct: 1665 agatttagaagataaattgtgggctaaaggattgtcctcacaagaagctaataagctcat 1724
Query: 1897 caaagactttttgaacagcaacaaggaattgcttgaaaaagctttagacttcaataaagc 1956
|||||||||||||||||||||||| ||| || ||| ||||| |||| |||||||||||||
Sbjct: 1725 caaagactttttgaacagcaacaaagaaatggttggaaaagttttaaacttcaataaagc 1784
Query: 1957 tgtagctgaagctaaaaatacaggcaattatgacggagtgaaaaaagctcaaaaagatct 2016
|||||||||||||||||| |||||||||||||| | ||||||||||||||| ||||||||
Sbjct: 1785 tgtagctgaagctaaaaacacaggcaattatgatgaagtgaaaaaagctcagaaagatct 1844
Query: 2017 tgaaaaatctataaggaaacgagagcgtttagagcaagaaataacgaaaaaatttgagaa 2076
|||||||||| ||||||||||||||| ||||||| ||||| || |||||||||| ||||
Sbjct: 1845 tgaaaaatctctaaggaaacgagagcatttagagaaagaagtagcgaaaaaattggagag 1904
Query: 2077 caagagcggcaacaaaaataaaatggaagcgaaagttcaagctaacagccaaaaagatgg 2136
|| | || ||||||||||| ||||||||| |||| ||||||||||||||||||||||
Sbjct: 1905 cagaaacgacaacaaaaatagaatggaagcaaaagctcaagctaacagccaaaaagataa 1964
Query: 2137 gatttttaagcttatcaatgaagaggctcataaggaagcaagaatcgccgcttacgctca 2196
||||||| | | |||||| |||||||| ||||||||||||| |||| || || ||
Sbjct: 1965 gatttttgcgttgatcaatcaagaggctagtaaggaagcaagagcggccgttttcgatcc 2024
Query: 2197 gaatcttaaaggcatcaggagggaattgtttgataaagttaaaaatctcaacaagaattt 2256
||||||||||||||||||||| ||||||| ||||||| || ||||| |||||||||||||
Sbjct: 2025 gaatcttaaaggcatcaggagcgaattgtctgataaacttgaaaatatcaacaagaattt 2084
Query: 2257 gaaagactttgataaatcttttgatgcgctcaaaagtggcaaaaataaggatttcagcaa 2316
||||||||||| ||||||||||||| ||||||| |||||||||||| |||||||||||
Sbjct: 2085 gaaagactttggcaaatcttttgatgaactcaaaaatggcaaaaataatgatttcagcaa 2144
Query: 2317 ggcagaagaaacgctaaaagcccttgaaag-ctcggtgaaagatttgggtatcaatccag 2375
||||||||||||||||||||||||| |||| ||||||||||||||| || ||||||||||
Sbjct: 2145 ggcagaagaaacgctaaaagccctt-aaagactcggtgaaagatttaggcatcaatccag 2203
Query: 2376 aatggatttcaaaagttgaaaaccttaatgcagctttgaatgaattcaaaaatggcaaaa 2435
|||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 2204 aatggatttcaaaaattgaaaaccttaatgtagctttgaatgatttcaaaaatggcaaaa 2263
Query: 2436 ataaggatttcagcaaggtaacacaagcaaaaagcgaccttgaaaattccattaaggatg 2495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2264 ataaggatttcagcaaggtaacacaagcaaaaagcgaccttgaaaattccattaaggatg 2323
Query: 2496 tgctcatcaatcaagagataacggataaagttgacaatctcaatcaggctgtat 2549
|| |||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 2324 tgatcattaatcaaaagataacggataaagttgacaatctcaatcaggctgtat 2377
Score = 892 bits (2301), Expect = e-259
Identities = 487/532 (92%)
Strand = Plus / Plus
Query: 42 aacaccaagccaaacggcttttaatccacaacaatttatcaataatcttcaagtggcttt 101
||||||| |||||||| |||| ||| |||| ||||||||||||||||||||| |||||
Sbjct: 30 aacaccagaccaaacgggttttgttccgcaacgatttatcaataatcttcaagtagcttt 89
Query: 102 tattaaacttgatagtgctgtcgcttcatttgatcccgatcaaaaaccaatcgttgataa 161
||| ||| |||||| |||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 90 tatcaaagttgataacgctgtcgcttcatttgatcctgatcaaaaatcaatcgttgataa 149
Query: 162 gaacgatagggataacaggcaagcttttaatgtaatctcgcaattaagggaagaatacgc 221
||| |||| ||||||||||||||||||| | |||||||||| ||||||||||||||||
Sbjct: 150 gaatgataaggataacaggcaagcttttgagaaaatctcgcaactaagggaagaatacgc 209
Query: 222 caataaagcgatcaaaaatcccaccaaaaagaatcagtatttttcagactttatcgataa 281
||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 210 caataaagcgatcaaaaatcctgccaaaaagaatcagtatttttcagactttatcaataa 269
Query: 282 aagcaatgatttgatcaacaaaaacgatctcattgatacagattcttccacaaagagctt 341
||||||||||||||||||||| || ||||||||| | |||||||||| | |||||||
Sbjct: 270 gagcaatgatttgatcaacaaagacaatctcattgctgtagattcttccgtagagagctt 329
Query: 342 tgaaaaatttggggctcagcgttaccaaatttttatgaattgggtgtcccatcaaaaaga 401
| |||||||||| |||||||||||||||||||| || ||||||||||| |||||||||
Sbjct: 330 tcggaaatttggggatcagcgttaccaaatttttacgagttgggtgtcccttcaaaaaga 389
Query: 402 tccgtctaaaatcaacacccaaaaaatccgagattttatggaaaatatcatacaaccccc 461
|||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct: 390 tccgtctaaaatcaacacccaacaaatccgaaattttatggaaaatgtcatacaaccccc 449
Query: 462 tatctctgatgataaagaaaaagcggagtttttgaggtctgccaaacaatcttttgcagg 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tatctctgatgataaagaaaaagcggagtttttgaggtctgccaaacaatcttttgcagg 509
Query: 522 aattatcatagggaaccaaacccgatcggatgaaaaattcatgggcgttttt 573
|||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 510 aattatcatagggaaccaaatccgatcggatgaaaaattcatgggcgtgttt 561
Score = 578 bits (1491), Expect = e-165
Identities = 325/362 (90%)
Strand = Plus / Plus
Query: 3013 gcaagcgaaattggacaattacgctactaacagccacacacgcattaatagcaatgtcaa 3072
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 3129 gcaagcgaaattggacaattacgctactaacagccacacacgcattaatagcaatgtcca 3188
Query: 3073 aaatggaacaatcaatgaaaaagcgatcggcatgctaacgcaaaaaaaccctgagtggct 3132
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 3189 caatggagcaatcaatgaaaaagcgactggcatgctaacgcaaaaaaaccctgagtggct 3248
Query: 3133 caagcttgtgaatgataagatagttgcgcataatgtgggaagcgctcctttgtcaggtta 3192
|||||| |||||||||||||||||||| |||||||||||||| |||| |||||||| ||
Sbjct: 3249 caagctcgtgaatgataagatagttgcacataatgtgggaagtgctcatttgtcagagta 3308
Query: 3193 tgataaaattggattcaaccaaaagaatatgaaaggttattctgattcgttcaggttttc 3252
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 3309 tgataaaattggattcaaccaaaagaatatgaaagattattctgattcgttcaagttttc 3368
Query: 3253 caccaagttgagcaatgccgtaaaaaacattaagtctgactttaagcaacttttaaccga 3312
||||||||||| ||||||||||||| ||||||||||| |||| |||| |||||||| |
Sbjct: 3369 caccaagttgaacaatgccgtaaaagacattaagtctagctttgtgcaatttttaaccaa 3428
Query: 3313 ttgcatttctgcaggaacttacagcccgaagaaagc------ggaacatggagttaaaaa 3366
| ||||| ||||| |||||||| || |||||| |||||||||||| |||||
Sbjct: 3429 tacattttctacaggatcttacagcttgacgaaagcaaatgtggaacatggagtcaaaaa 3488
Query: 3367 ta 3368
||
Sbjct: 3489 ta 3490
Score = 373 bits (963), Expect = e-103
Identities = 203/217 (94%)
Strand = Plus / Plus
Query: 817 tggggattggcttgatatttttttatcgtttgtatttaacaaagaacaatcttctgatct 876
||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||
Sbjct: 615 tggggattggcttgatatttttttatcatttgtatttaacaaaaaacaatcttccgatct 674
Query: 877 caaagaaacgctcaatcaagagccaaggcctcatgttgaacaaaatgtagcctctacccc 936
||||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||| |
Sbjct: 675 caaagaaacgctcaatcaagagccaaggcctgattttgaacaaaatttagccactaccac 734
Query: 937 cacccacatacaaggcttaccgcctgaagctagggatttgcttgatgaaaggggtgattt 996
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 735 caccgacatacaaggcttaccgcctgaagctagagatttgcttgatgaaaggggtaattt 794
Query: 997 ttctaaattcactcttggtgatatggaaatgttggat 1033
|| ||||||||||||||||||| |||| |||||||||
Sbjct: 795 ttttaaattcactcttggtgatgtggagatgttggat 831
Score = 261 bits (674), Expect = 7e-70
Identities = 150/176 (85%)
Strand = Plus / Plus
Query: 2782 ccctttgaaaaggtatgctaaagttgatgatctcagtaaggtagggctttcaagggagca 2841
|||||||| ||| |||| |||| ||||||||||||| ||||| ||||||||||| ||
Sbjct: 2907 ccctttgagaagaagtgctgcagttaatgatctcagtaaagtaggactttcaagggaaca 2966
Query: 2842 agaattgaatgagaaaattggcaatctcaatcaggcagtgtcagaagctaaagcaggttc 2901
|||||||| | | ||||||| ||||||||||||| || |||||||||||| |||||
Sbjct: 2967 agaattgactcgtagaattggcgatctcaatcaggcggtatcagaagctaaaacaggtca 3026
Query: 2902 ttttggcaacctagaacaaatgatggatggactcaaagattctacaaaaaagaatg 2957
||||| |||||||||||||| ||| |||| ||||||||||||||| ||||||||||
Sbjct: 3027 ttttgacaacctagaacaaaagatagatgaactcaaagattctacgaaaaagaatg 3082
Score = 75 bits (193), Expect = 9e-14
Identities = 44/49 (90%)
Strand = Plus / Plus
Query: 767 gatgaatctttgaaagagaggcaagaagcacaaaacaatggagagcctg 815
|||||||||||||||| |||||||||||| |||| |||| ||||||||
Sbjct: 562 gatgaatctttgaaagcaaggcaagaagcagaaaaaaatgcagagcctg 610
Score = 58 bits (149), Expect = 1e-08
Identities = 31/33 (94%)
Strand = Plus / Plus
Query: 2733 ggcaatcagatagccctgaacccatttacgcta 2765
||| ||||| |||||||||||||||||||||||
Sbjct: 2840 ggcgatcagctagccctgaacccatttacgcta 2872
Score = 54 bits (139), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 3373 tacaaaaagtggtttccagaaatcttaa 3400
||||||||||||||||||||||||||||
Sbjct: 3492 tacaaaaagtggtttccagaaatcttaa 3519
Score = 44 bits (112), Expect = 2e-04
Identities = 24/28 (86%)
Strand = Plus / Plus
Query: 1 atggctaacgaaaccatcaatcaaacaa 28
||| |||| |||||||| |||||||||
Sbjct: 1 atgactaatgaaaccattgatcaaacaa 28
Score = 23 bits (60), Expect = 3e+02
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 2721 tcagtaaggtag 2732
||||||||||||
Sbjct: 2402 tcagtaaggtag 2413
Score = 21 bits (54), Expect = 1e+03
Identities = 11/11 (100%)
Strand = Plus / Plus
Query: 1034 tacaagttcaa 1044
|||||||||||
Sbjct: 862 tacaagttcaa 872
Score = 18 bits (45), Expect = 2e+04
Identities = 9/9 (100%)
Strand = Plus / Plus
Query: 2988 aagtgccta 2996
|||||||||
Sbjct: 3113 aagtgccta 3121
Score = 13 bits (35), Expect = 3e+05
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2972 tttgaag 2978
|||||||
Sbjct: 3084 tttgaag 3090
|
