>NC_017365_P1|2|G2|384899144|YP_005774524.1|Helicobacter_pylori_F30|-|355..3879|cagA|HPF30_0779|cag
Length = 3525
Score = 2494 bits (6437), Expect = 0.0
Identities = 1383/1518 (91%)
Strand = Plus / Plus
Query: 1034 tacaagttcaaccagttaccgattcacaataacgctctgtcttctatgctaatggggagt 1093
||||||||||| || ||| ||| |||||||||||||| |||||| ||||||||||| ||
Sbjct: 874 tacaagttcaatcaattattgatccacaataacgctctatcttctgtgctaatggggggt 933
Query: 1094 catagcagcatagaacctgaaaaagtttcattgttgtatggggataatggtggtcctgaa 1153
||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 934 catagcaacatagaacctgaaaaagtttcattattgtatggagataatggtggtcctgaa 993
Query: 1154 gctaggcatgattggaacgccaccgttggttataaaaaccaacaaggcaacaatgtggcc 1213
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 994 gctaggcatgattggaacgccaccgttggttacaaaaaccaacaaggcaacaatgtggcc 1053
Query: 1214 acactcatcaatgcgcatcttaaaaacggcagcgggttagtcatagcgggtaatggaaat 1273
|||||||| |||||||| ||| |||||||| ||||||||||||| |||||||| ||
Sbjct: 1054 acactcattaatgcgcaccttcgcaacggcagtgggttagtcatagtgggtaatgaggat 1113
Query: 1274 gggattaacaaccctagcttctatctctacaaaacagaccaactcacaggcttggaacaa 1333
|||||||| |||||||||||||||||||| ||| ||| ||||||||||| ||| |||||
Sbjct: 1114 gggattaaaaaccctagcttctatctctataaagaagatcaactcacaggtttgaaacaa 1173
Query: 1334 gcgttgagtcaagaagagatccaaaacaaagtggatttcatggaacttcttgcacaaaac 1393
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1174 gcgttgagtcaagaagagatccaaaacaaagtggatttcatggaatttcttgcacaaaac 1233
Query: 1394 aacgctagattagataacttgagcgaggaagagaaagaaaagttccaaactgagattgga 1453
|| |||| |||||| |||||||||||| ||||||||||||| |||||||||||||||| |
Sbjct: 1234 aatgctaaattagacaacttgagcgagaaagagaaagaaaaattccaaactgagattgaa 1293
Query: 1454 aatttccaaaaagaccctaaggcttatttagactccctagggaatgatcgcattgctttt 1513
||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 1294 gatttccaaaaagaccgtaaggcttatttagacgccctagggaatgatcgcatcgctttt 1353
Query: 1514 gtttctaaaaaagacc-aaaagcatttagctttggttactgagtttggtaatggggaatt 1572
|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 1354 gtttctaaaaaagacccaaaa-catttagctttggttactgagtttggtaatggggaagt 1412
Query: 1573 gagctatactctcaaagattatgggaaaaaacaagatagagctttagatagggagacaaa 1632
||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 1413 gagctataccctcaaagattatgggaaaaaacaagataaagctttagatggggagacaaa 1472
Query: 1633 aaccactcttcaaggtaacctaaagcatgatggcgtgatgtttgtcaattattccaattt 1692
||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||
Sbjct: 1473 aaccactcttcaaggtagcctaaaatatgatggcgtgatgtttgtcaattattctaattt 1532
Query: 1693 caaatacaccaacgcctccaagagtcctgatgagggtataggcgctacgaatggcgtttc 1752
||||||||||||||||||||||||||||||| |||| | ||| ||||||||||||||||
Sbjct: 1533 caaatacaccaacgcctccaagagtcctgataagggcgtgggcactacgaatggcgtttc 1592
Query: 1753 ccatttggaagcaaattttagcaaggtggctgtctttaatttgcctgatttaaatggtct 1812
||||||||||||||||||||||||||| |||||||||||||| ||| |||||||| |||
Sbjct: 1593 ccatttggaagcaaattttagcaaggtagctgtctttaatttacctaatttaaataatct 1652
Query: 1813 cgctatctctagttttgcaaggcggaatttagaggataaactgatcgctaaaggattgcc 1872
||||||| ||| || | |||||| ||||||| |||||| || | |||||||||||| |
Sbjct: 1653 cgctatcactaattatataaggcgagatttagaagataaattgttggctaaaggattgtc 1712
Query: 1873 cccaaaagacgctaataagatcatcaaagactttttgaacagcaacaaggaattgcttga 1932
|||| |||| ||||||||| |||||||||||||||||||||||||||| ||| || |||
Sbjct: 1713 cccacaagaagctaataagctcatcaaagactttttgaacagcaacaaagaaatggttgg 1772
Query: 1933 aaaagctttagacttcaataaagctgtagctgaagctaaaaatacaggcaattatgacgg 1992
||||| || | ||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 1773 aaaagtttcaaacttcaataaagctgtagctgaagctaaaaacacaggcaattatgatga 1832
Query: 1993 agtgaaaaaagctcaaaaagatcttgaaaaatctataaggaaacgagagcgtttagagca 2052
||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||| |
Sbjct: 1833 agtgaaaaaagctcagaaagatcttgaaaaatctctaaggaaacgagagcatttagagaa 1892
Query: 2053 agaaataacgaaaaaatttgagaacaagagcggcaacaaaaataaaatggaagcgaaagt 2112
|||| || |||||||||| |||| || | || ||||||||||| ||||||||| ||||
Sbjct: 1893 agaagtagcgaaaaaattggagagcagaaacgacaacaaaaatagaatggaagcaaaagc 1952
Query: 2113 tcaagctaacagccaaaaagatgggatttttaagcttatcaatgaagaggctcataagga 2172
|||||||||||||||||||||| ||||||| ||||||||| |||||||| ||||||
Sbjct: 1953 tcaagctaacagccaaaaagataagatttttgcacttatcaatcaagaggctagtaagga 2012
Query: 2173 agcaagaatcgccgcttacgctcagaatcttaaaggcatcaggagggaattgtttgataa 2232
||||||| ||||||| || || ||||||||||||||||||||| ||||||| ||||||
Sbjct: 2013 agcaagagcggccgctttcgatccgaatcttaaaggcatcaggagcgaattgtctgataa 2072
Query: 2233 agttaaaaatctcaacaagaatttgaaagactttgataaatcttttgatgcgctcaaaag 2292
| || ||||| |||||||||||||||||||||||| |||||| |||||| |||||||
Sbjct: 2073 acttgaaaatatcaacaagaatttgaaagactttggcaaatctgttgatgaactcaaaaa 2132
Query: 2293 tggcaaaaataaggatttcagcaaggcagaagaaacgctaaaagcccttgaaag-ctcgg 2351
|||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 2133 tggcaaaaataatgatttcagcaaggcagaagaaacgctaaaagccctt-aaagactcgg 2191
Query: 2352 tgaaagatttgggtatcaatccagaatggatttcaaaagttgaaaaccttaatgcagctt 2411
|||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 2192 tgaaagatttaggcatcaatccagaatggatttcaaaaattgaaaaccttaatgcagctt 2251
Query: 2412 tgaatgaattcaaaaatggcaaaaataaggatttcagcaaggtaacacaagcaaaaagcg 2471
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2252 tgaatgatttcaaaaatggcaaaaataaggatttcagcaaggtaacacaagcaaaaagcg 2311
Query: 2472 accttgaaaattccattaaggatgtgctcatcaatcaagagataacggataaagttgaca 2531
|||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||
Sbjct: 2312 accttgaaaattccattaaggatgtgatcattaatcaaaagataacggataaagttgaca 2371
Query: 2532 atctcaatcaggctgtat 2549
||||||||||||||||||
Sbjct: 2372 atctcaatcaggctgtat 2389
Score = 982 bits (2534), Expect = e-287
Identities = 540/586 (92%)
Strand = Plus / Plus
Query: 1 atggctaacgaaaccatcaatcaaacaaaaaaaccagatcaaacaccaagccaaacggct 60
||| |||| |||||||| ||||||||| || ||||||||||||||||| |||||||| |
Sbjct: 1 atgactaatgaaaccattgatcaaacaataacaccagatcaaacaccaaaccaaacggat 60
Query: 61 tttaatccacaacaatttatcaataatcttcaagtggcttttattaaacttgatagtgct 120
||| ||| |||| ||||||||||||||||||||| |||||||| ||| |||||| |||
Sbjct: 61 tttgttccgcaacgatttatcaataatcttcaagtagcttttatcaaagttgataacgct 120
Query: 121 gtcgcttcatttgatcccgatcaaaaaccaatcgttgataagaacgatagggataacagg 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 121 gtcgcttcatttgatcccgatcaaaaaccaatcgttgataagaatgatagggataacagg 180
Query: 181 caagcttttaatgtaatctcgcaattaagggaagaatacgccaataaagcgatcaaaaat 240
||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 181 caagcttttgagaaaatctcgcaactaagggaagaatacgccaataaagcgatcaaaaat 240
Query: 241 cccaccaaaaagaatcagtatttttcagactttatcgataaaagcaatgatttgatcaac 300
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 241 cccaccaaaaagaatcagtatttttcagactttatcaataagagcaatgatttgatcaac 300
Query: 301 aaaaacgatctcattgatacagattcttccacaaagagctttgaaaaatttggggctcag 360
||| || ||||||||| | |||||||||| | |||||||| |||||||||| ||||
Sbjct: 301 aaagacaatctcattgctgtagattcttccgtagagagctttcggaaatttggggatcag 360
Query: 361 cgttaccaaatttttatgaattgggtgtcccatcaaaaagatccgtctaaaatcaacacc 420
|||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 361 cgttaccaaatttttacgagttgggtgtcccttcaaaaagatccgtctaaaatcaacacc 420
Query: 421 caaaaaatccgagattttatggaaaatatcatacaaccccctatctctgatgataaagaa 480
||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 421 caacaaatccgaaattttatggaaaatatcatacaaccccctatctctgatgataaggaa 480
Query: 481 aaagcggagtttttgaggtctgccaaacaatcttttgcaggaattatcatagggaaccaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aaagcggagtttttgaggtctgccaaacaatcttttgcaggaattatcatagggaaccaa 540
Query: 541 acccgatcggatgaaaaattcatgggcgtttttggatgaatctttg 586
| ||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 541 atccgatcggatgaaaaattcatgggcgtgttt-gatgaatctttg 585
Score = 579 bits (1495), Expect = e-165
Identities = 325/362 (90%)
Strand = Plus / Plus
Query: 3013 gcaagcgaaattggacaattacgctactaacagccacacacgcattaatagcaatgtcaa 3072
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 3135 gcaagcgaaattggacaattacgctactaacagccacacacgcattaatagcaatgtcca 3194
Query: 3073 aaatggaacaatcaatgaaaaagcgatcggcatgctaacgcaaaaaaaccctgagtggct 3132
|| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 3195 aagtggaacaatcaatgaaaaagcgaccggcatgctaacgcaaagaaaccctgagtggct 3254
Query: 3133 caagcttgtgaatgataagatagttgcgcataatgtgggaagcgctcctttgtcaggtta 3192
|||||| |||||||||||||||||||| |||||||||||||| |||| |||||||| ||
Sbjct: 3255 caagctcgtgaatgataagatagttgcacataatgtgggaagtgctcatttgtcagagta 3314
Query: 3193 tgataaaattggattcaaccaaaagaatatgaaaggttattctgattcgttcaggttttc 3252
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 3315 tgataaaattggattcaaccaaaagaatatgaaagattattctgattcgttcaagttttc 3374
Query: 3253 caccaagttgagcaatgccgtaaaaaacattaagtctgactttaagcaacttttaaccga 3312
||||||||||| ||||||||||||| ||||||||||| |||| |||| |||||||| |
Sbjct: 3375 caccaagttgaacaatgccgtaaaagacattaagtctagctttgtgcaatttttaaccaa 3434
Query: 3313 ttgcatttctgcaggaacttacagcccgaagaaagc------ggaacatggagttaaaaa 3366
||||| ||||| |||||||| || |||||| |||||||||||| |||||
Sbjct: 3435 cacattttctacaggatcttacagcttgatgaaagcaaatgtggaacatggagtcaaaaa 3494
Query: 3367 ta 3368
||
Sbjct: 3495 ta 3496
Score = 374 bits (965), Expect = e-104
Identities = 204/217 (94%)
Strand = Plus / Plus
Query: 817 tggggattggcttgatatttttttatcgtttgtatttaacaaagaacaatcttctgatct 876
||||||||||||||||||||||||||| ||||| ||||||||| |||||||||| |||||
Sbjct: 627 tggggattggcttgatatttttttatcatttgtgtttaacaaaaaacaatcttccgatct 686
Query: 877 caaagaaacgctcaatcaagagccaaggcctcatgttgaacaaaatgtagcctctacccc 936
||||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||| |
Sbjct: 687 caaagaaacgctcaatcaagagccaaggcctgattttgaacaaaatttagccactaccac 746
Query: 937 cacccacatacaaggcttaccgcctgaagctagggatttgcttgatgaaaggggtgattt 996
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 747 caccgacatacaaggcttaccgcctgaatctagggatttgcttgatgaaaggggtaattt 806
Query: 997 ttctaaattcactcttggtgatatggaaatgttggat 1033
|| ||||||||||||||||||||||||||||||||||
Sbjct: 807 ttttaaattcactcttggtgatatggaaatgttggat 843
Score = 242 bits (624), Expect = 5e-64
Identities = 136/155 (88%)
Strand = Plus / Plus
Query: 2803 agttgatgatctcagtaaggtagggctttcaagggagcaagaattgaatgagaaaattgg 2862
|||| ||||||||||||| ||||||||||||||||| |||||||||| | | ||||||
Sbjct: 2934 agttaatgatctcagtaaagtagggctttcaagggaacaagaattgactcgtagaattgg 2993
Query: 2863 caatctcaatcaggcagtgtcagaagctaaagcaggttcttttggcaacctagaacaaat 2922
| ||||||||||||| || |||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 2994 cgatctcaatcaggcggtatcagaagctaaaacaggtcgttttgacaacctagaacaaaa 3053
Query: 2923 gatggatggactcaaagattctacaaaaaagaatg 2957
||| |||| ||||||||||||||| ||||||||||
Sbjct: 3054 gatagatgaactcaaagattctacgaaaaagaatg 3088
Score = 60 bits (156), Expect = 2e-09
Identities = 32/33 (97%)
Strand = Plus / Plus
Query: 2733 ggcaatcagatagccctgaacccatttacgcta 2765
||||||||| |||||||||||||||||||||||
Sbjct: 2846 ggcaatcagctagccctgaacccatttacgcta 2878
Score = 54 bits (139), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 3373 tacaaaaagtggtttccagaaatcttaa 3400
||||||||||||||||||||||||||||
Sbjct: 3498 tacaaaaagtggtttccagaaatcttaa 3525
Score = 47 bits (121), Expect = 2e-05
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 785 aggcaagaagcacaaaacaatggagagcctg 815
|||||||||||| |||| |||| ||||||||
Sbjct: 592 aggcaagaagcagaaaaaaatgcagagcctg 622
Score = 28 bits (73), Expect = 9e+00
Identities = 15/16 (94%)
Strand = Plus / Plus
Query: 2988 aagtgcctattagttt 3003
||||||||||| ||||
Sbjct: 3119 aagtgcctattggttt 3134
Score = 23 bits (60), Expect = 3e+02
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 2721 tcagtaaggtag 2732
||||||||||||
Sbjct: 2414 tcagtaaggtag 2425
Score = 13 bits (35), Expect = 3e+05
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2972 tttgaag 2978
|||||||
Sbjct: 3090 tttgaag 3096 |