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Homologs of tnpA gene of NC_006905_P6

DNA-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) STY4034
( - )

putative IS1351 transposase (pseudogene)

NC_003198
(Salmonella enterica CT18)

2e-65

95.6

2) t3762
( - )

NC_004631
(Salmonella enterica Ty2)

2e-65

95.6

3) SG3673
( - )

NC_011274
(Salmonella enterica 287/91)

1e-54

92.6

• Sequence Alignments

1) STY4034 in NC_003198


>NC_006905_P6|2|G1|62182246|YP_218663.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|851..1009|tnpA|SC3676|transposase 
          Length = 159

 Score = 246 bits (635), Expect = 2e-65
 Identities = 129/135 (96%)
 Strand = Plus / Plus

Query: 1   atgcgtaaagcccgtctcactgagcatcagaacatcgccgtaattaagttggtcgaagct 60
           |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atgcgtaaagtccgtcttactgagcatcagaacatcgccgtaattaagttggtcgaagct 60

Query: 61  ggacgagcggttaaagatatctgccaggaggcggatatttctgaagtgactgacgacatc 120
           || |||||||||||| |||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 61  gggcgagcggttaaaaatatctgccaggaggcggatatttctgaagtgactgactatatc 120

Query: 121 tatggacattgggtt 135
           |||||||||||||||
Sbjct: 121 tatggacattgggtt 135

2) t3762 in NC_004631


>NC_006905_P6|2|G1|62182246|YP_218663.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|851..1009|tnpA|SC3676|transposase 
          Length = 159

 Score = 246 bits (635), Expect = 2e-65
 Identities = 129/135 (96%)
 Strand = Plus / Plus

Query: 1   atgcgtaaagcccgtctcactgagcatcagaacatcgccgtaattaagttggtcgaagct 60
           |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atgcgtaaagtccgtcttactgagcatcagaacatcgccgtaattaagttggtcgaagct 60

Query: 61  ggacgagcggttaaagatatctgccaggaggcggatatttctgaagtgactgacgacatc 120
           || |||||||||||| |||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 61  gggcgagcggttaaaaatatctgccaggaggcggatatttctgaagtgactgactatatc 120

Query: 121 tatggacattgggtt 135
           |||||||||||||||
Sbjct: 121 tatggacattgggtt 135

3) SG3673 in NC_011274


>NC_006905_P6|2|G1|62182246|YP_218663.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|851..1009|tnpA|SC3676|transposase 
          Length = 159

 Score = 211 bits (544), Expect = 1e-54
 Identities = 112/121 (93%)
 Strand = Plus / Plus

Query: 12  ccgtctcactgagcatcagaacatcgccgtaattaagttggccgaagccggatgaatggt 71
           |||||| |||||||||||||||||||||||||||||||||| |||||| ||  ||  |||
Sbjct: 12  ccgtcttactgagcatcagaacatcgccgtaattaagttggtcgaagctgggcgagcggt 71

Query: 72  taaagatatctgccaggaggcggatatttgtgaagtgactgactatatctatggacattg 131
           |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 72  taaaaatatctgccaggaggcggatatttctgaagtgactgactatatctatggacattg 131

Query: 132 g 132
           |
Sbjct: 132 g 132